COP00_00015 SM00635 Bacterial Ig-like domain 2 COP00_00065 SM00710 Parallel beta-helix repeats COP00_00090 SM00257 Lysin motif COP00_00090 SM00644 COP00_00090 COP00_00180 SM00354 helix_turn _helix lactose operon repressor COP00_00185 SM01061 CAT RNA binding domain COP00_00245 SM00091 PAS domain COP00_00245 SM00387 Histidine kinase-like ATPases COP00_00245 SM00388 His Kinase A (phosphoacceptor) domain COP00_00265 SM00260 Two component signalling adaptor domain COP00_00265 SM00448 cheY-homologous receiver domain COP00_00295 SM00052 Putative diguanylate phosphodiesterase COP00_00390 SM00852 Probable molybdopterin binding domain COP00_00415 SM00382 ATPases associated with a variety of cellular activities COP00_00420 SM00382 ATPases associated with a variety of cellular activities COP00_00435 SM00382 ATPases associated with a variety of cellular activities COP00_00450 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_00450 SM01134 COP00_00450 COP00_00480 SM00382 ATPases associated with a variety of cellular activities COP00_00500 SM00966 SpoVT / AbrB like domain COP00_00505 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) COP00_00505 SM00091 PAS domain COP00_00505 SM00387 Histidine kinase-like ATPases COP00_00505 SM00388 His Kinase A (phosphoacceptor) domain COP00_00520 SM00849 Metallo-beta-lactamase superfamily COP00_00555 SM00861 Transketolase, pyrimidine binding domain COP00_00620 SM00838 Elongation factor G C-terminus COP00_00630 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_00650 SM00670 Large family of predicted nucleotide-binding domains COP00_00675 SM00878 Biotin carboxylase C-terminal domain COP00_00720 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_00770 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_00825 SM00740 COP00_00825 COP00_00830 SM00740 COP00_00830 COP00_00885 SM00842 Cell division protein FtsA COP00_00890 SM00864 Tubulin/FtsZ family, GTPase domain COP00_00890 SM00865 Tubulin/FtsZ family, C-terminal domain COP00_00920 SM00382 ATPases associated with a variety of cellular activities COP00_00955 SM00363 S4 RNA-binding domain COP00_00980 SM00363 S4 RNA-binding domain COP00_01005 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain COP00_01010 SM00851 MGS-like domain COP00_01010 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain COP00_01080 SM00831 Cation transporter/ATPase, N-terminus COP00_01095 SM00072 Guanylate kinase homologues. COP00_01100 SM01409 COP00_01100 COP00_01110 SM00487 DEAD-like helicases superfamily COP00_01110 SM00490 helicase superfamily c-terminal domain COP00_01135 SM00331 Sigma factor PP2C-like phosphatases COP00_01135 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain COP00_01140 SM00220 Serine/Threonine protein kinases, catalytic domain COP00_01140 SM00740 COP00_01140 COP00_01155 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain COP00_01175 SM01120 COP00_01175 COP00_01175 SM01121 COP00_01175 COP00_01190 SM00487 DEAD-like helicases superfamily COP00_01190 SM00490 helicase superfamily c-terminal domain COP00_01205 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. COP00_01210 SM00822 COP00_01210 COP00_01220 SM00358 Double-stranded RNA binding motif COP00_01220 SM00535 Ribonuclease III family COP00_01230 SM00382 ATPases associated with a variety of cellular activities COP00_01230 SM00962 SRP54-type protein, GTPase domain COP00_01230 SM00963 SRP54-type protein, helical bundle domain COP00_01240 SM00382 ATPases associated with a variety of cellular activities COP00_01240 SM00962 SRP54-type protein, GTPase domain COP00_01240 SM00963 SRP54-type protein, helical bundle domain COP00_01300 SM00881 CoA binding domain COP00_01310 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain COP00_01310 SM00437 Bacterial DNA topoisomerase I DNA-binding domain COP00_01310 SM00493 COP00_01310 COP00_01330 SM00382 ATPases associated with a variety of cellular activities COP00_01330 SM01086 C-terminal, D2-small domain, of ClpB protein COP00_01370 SM00382 ATPases associated with a variety of cellular activities COP00_01420 SM00448 cheY-homologous receiver domain COP00_01455 SM00382 ATPases associated with a variety of cellular activities COP00_01455 SM00962 SRP54-type protein, GTPase domain COP00_01465 SM00448 cheY-homologous receiver domain COP00_01470 SM00073 Histidine Phosphotransfer domain COP00_01470 SM00260 Two component signalling adaptor domain COP00_01470 SM00387 Histidine kinase-like ATPases COP00_01470 SM01231 COP00_01470 COP00_01475 SM00260 Two component signalling adaptor domain COP00_01535 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_01545 SM00479 COP00_01545 COP00_01545 SM00481 DNA polymerase alpha chain like domain COP00_01550 SM00028 Tetratricopeptide repeats COP00_01565 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_01565 SM00322 K homology RNA-binding domain COP00_01600 SM00904 Riboflavin kinase COP00_01605 SM01387 COP00_01605 COP00_01610 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_01610 SM00322 K homology RNA-binding domain COP00_01640 SM00859 Semialdehyde dehydrogenase, NAD binding domain COP00_01650 SM01130 COP00_01650 COP00_01655 SM00849 Metallo-beta-lactamase superfamily COP00_01675 SM00382 ATPases associated with a variety of cellular activities COP00_01675 SM00843 COP00_01675 COP00_01680 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_01680 SM00866 COP00_01680 COP00_01715 SM00530 Helix-turn-helix XRE-family like proteins COP00_01730 SM00382 ATPases associated with a variety of cellular activities COP00_01735 SM00322 K homology RNA-binding domain COP00_01735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_01755 SM00829 Enoylreductase COP00_01765 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_01780 SM00533 DNA-binding domain of DNA mismatch repair MUTS family COP00_01780 SM00534 ATPase domain of DNA mismatch repair MUTS family COP00_01785 SM00853 MutL C terminal dimerisation domain COP00_01785 SM01340 COP00_01785 COP00_01815 SM00860 SMI1 / KNR4 family COP00_01830 SM00860 SMI1 / KNR4 family COP00_01835 SM00860 SMI1 / KNR4 family COP00_01855 SM00860 SMI1 / KNR4 family COP00_01890 SM00656 COP00_01890 COP00_01905 SM00344 helix_turn_helix ASNC type COP00_01965 SM01005 Alanine racemase, C-terminal domain COP00_01995 SM00823 Phosphopantetheine attachment site COP00_02000 SM00823 Phosphopantetheine attachment site COP00_02045 SM00257 Lysin motif COP00_02045 SM00636 COP00_02045 COP00_02125 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_02125 SM00895 COP00_02125 COP00_02135 SM00646 COP00_02135 COP00_02170 SM00860 SMI1 / KNR4 family COP00_02185 SM00382 ATPases associated with a variety of cellular activities COP00_02195 SM00507 HNH nucleases COP00_02200 SM00860 SMI1 / KNR4 family COP00_02210 SM00860 SMI1 / KNR4 family COP00_02220 SM00860 SMI1 / KNR4 family COP00_02240 SM00028 Tetratricopeptide repeats COP00_02260 SM00644 COP00_02260 COP00_02265 SM00710 Parallel beta-helix repeats COP00_02305 SM01040 BRO family, N-terminal domain COP00_02480 SM00530 Helix-turn-helix XRE-family like proteins COP00_02510 SM00411 bacterial (prokaryotic) histone like domain COP00_02670 SM00857 Resolvase, N terminal domain COP00_02880 SM00382 ATPases associated with a variety of cellular activities COP00_02905 SM00486 DNA polymerase type-B family COP00_02990 SM00305 Hint (Hedgehog/Intein) domain C-terminal region COP00_02990 SM00306 Hint (Hedgehog/Intein) domain N-terminal region COP00_03105 SM00857 Resolvase, N terminal domain COP00_03125 SM00422 helix_turn_helix, mercury resistance COP00_03130 SM01230 COP00_03130 COP00_03145 SM00530 Helix-turn-helix XRE-family like proteins COP00_03150 SM00530 Helix-turn-helix XRE-family like proteins COP00_03185 SM00885 D5 N terminal like COP00_03195 SM00891 ERCC4 domain COP00_03245 SM00507 HNH nucleases COP00_03325 SM00047 Lysozyme subfamily 2 COP00_03330 SM00710 Parallel beta-helix repeats COP00_03355 SM00644 COP00_03355 COP00_03565 SM00710 Parallel beta-helix repeats COP00_03580 SM00257 Lysin motif COP00_03585 SM00857 Resolvase, N terminal domain COP00_03595 SM00861 Transketolase, pyrimidine binding domain COP00_03620 SM00448 cheY-homologous receiver domain COP00_03690 SM01207 COP00_03690 COP00_03695 SM00881 CoA binding domain COP00_03700 SM00387 Histidine kinase-like ATPases COP00_03700 SM00433 TopoisomeraseII COP00_03705 SM00434 DNA Topoisomerase IV COP00_03710 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_03720 SM01007 Class II Aldolase and Adducin N-terminal domain COP00_03770 SM00926 Molybdopterin oxidoreductase Fe4S4 domain COP00_03785 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_03800 SM00100 Cyclic nucleotide-monophosphate binding domain COP00_03800 SM00419 helix_turn_helix, cAMP Regulatory protein COP00_03815 SM00100 Cyclic nucleotide-monophosphate binding domain COP00_03815 SM00419 helix_turn_helix, cAMP Regulatory protein COP00_03840 SM01067 Cellulose binding domain COP00_03880 SM00226 Low molecular weight phosphatase family COP00_03890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_03935 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_03980 SM00422 helix_turn_helix, mercury resistance COP00_03995 SM00829 Enoylreductase COP00_04000 SM00100 Cyclic nucleotide-monophosphate binding domain COP00_04085 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_04095 SM00382 ATPases associated with a variety of cellular activities COP00_04100 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_04165 SM00110 Complement component C1q domain. COP00_04225 SM00878 Biotin carboxylase C-terminal domain COP00_04305 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain COP00_04355 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_04360 SM00382 ATPases associated with a variety of cellular activities COP00_04365 SM00382 ATPases associated with a variety of cellular activities COP00_04380 SM00822 COP00_04380 COP00_04390 SM00926 Molybdopterin oxidoreductase Fe4S4 domain COP00_04400 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_04440 SM00382 ATPases associated with a variety of cellular activities COP00_04445 SM00849 Metallo-beta-lactamase superfamily COP00_04460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). COP00_04460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_04460 SM00319 Homologues of the ligand binding domain of Tar COP00_04495 SM00849 Metallo-beta-lactamase superfamily COP00_04500 SM00871 Bacterial transcription activator, effector binding domain COP00_04525 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_04595 SM00257 Lysin motif COP00_04600 SM00341 Helicase and RNase D C-terminal COP00_04600 SM00487 DEAD-like helicases superfamily COP00_04600 SM00490 helicase superfamily c-terminal domain COP00_04600 SM00956 COP00_04600 COP00_04735 SM00823 Phosphopantetheine attachment site COP00_04745 SM00823 Phosphopantetheine attachment site COP00_04750 SM00823 Phosphopantetheine attachment site COP00_04755 SM00822 COP00_04755 COP00_04755 SM00823 Phosphopantetheine attachment site COP00_04755 SM00825 Beta-ketoacyl synthase COP00_04755 SM00826 COP00_04755 COP00_04755 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. COP00_04800 SM00835 Cupin COP00_04875 SM00363 S4 RNA-binding domain COP00_04880 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_04910 SM00861 Transketolase, pyrimidine binding domain COP00_04915 SM00327 von Willebrand factor (vWF) type A domain COP00_04920 SM00382 ATPases associated with a variety of cellular activities COP00_04930 SM00257 Lysin motif COP00_05010 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_05010 SM00245 tail specific protease COP00_05055 SM00014 Acid phosphatase homologues COP00_05100 SM00882 Coenzyme A transferase COP00_05105 SM00882 Coenzyme A transferase COP00_05140 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_05225 SM00917 LeuA allosteric (dimerisation) domain COP00_05245 SM00567 E-Z type HEAT repeats COP00_05245 SM00932 Scaffold protein Nfu/NifU N terminal COP00_05250 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_05280 SM00357 Cold shock protein domain COP00_05320 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs COP00_05320 SM00475 5'-3' exonuclease COP00_05375 SM00491 COP00_05375 COP00_05390 SM00981 COP00_05390 COP00_05420 SM00487 DEAD-like helicases superfamily COP00_05420 SM00490 helicase superfamily c-terminal domain COP00_05470 SM00060 Fibronectin type 3 domain COP00_05480 SM00478 endonuclease III COP00_05480 SM00525 COP00_05480 COP00_05510 SM00479 COP00_05510 COP00_05510 SM00487 DEAD-like helicases superfamily COP00_05510 SM00491 COP00_05510 COP00_05550 SM00851 MGS-like domain COP00_05600 SM00914 COP00_05600 COP00_05605 SM00028 Tetratricopeptide repeats COP00_05670 SM00138 Methyltransferase, chemotaxis proteins COP00_05675 SM00562 COP00_05675 COP00_05705 SM00411 bacterial (prokaryotic) histone like domain COP00_05760 SM01240 COP00_05760 COP00_05765 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_05795 SM00870 COP00_05795 COP00_05805 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase COP00_05825 SM00257 Lysin motif COP00_05835 SM00487 DEAD-like helicases superfamily COP00_05835 SM00490 helicase superfamily c-terminal domain COP00_05860 SM00257 Lysin motif COP00_05890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_05890 SM00387 Histidine kinase-like ATPases COP00_05890 SM00388 His Kinase A (phosphoacceptor) domain COP00_05895 SM00448 cheY-homologous receiver domain COP00_05895 SM00862 Transcriptional regulatory protein, C terminal COP00_05925 SM00363 S4 RNA-binding domain COP00_05940 SM00936 Penicillin-binding protein 5, C-terminal domain COP00_06005 SM00028 Tetratricopeptide repeats COP00_06080 SM00387 Histidine kinase-like ATPases COP00_06090 SM00936 Penicillin-binding protein 5, C-terminal domain COP00_06185 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_06190 SM00710 Parallel beta-helix repeats COP00_06190 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses COP00_06225 SM00704 CDGSH-type zinc finger. Function unknown. COP00_06310 SM00382 ATPases associated with a variety of cellular activities COP00_06350 SM00849 Metallo-beta-lactamase superfamily COP00_06390 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_06390 SM00866 COP00_06390 COP00_06415 SM00098 Alkaline phosphatase homologues COP00_06425 SM01350 COP00_06425 COP00_06445 SM00260 Two component signalling adaptor domain COP00_06465 SM00382 ATPases associated with a variety of cellular activities COP00_06475 SM00062 Bacterial periplasmic substrate-binding proteins COP00_06475 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. COP00_06485 SM00046 Diacylglycerol kinase catalytic domain (presumed) COP00_06495 SM00861 Transketolase, pyrimidine binding domain COP00_06515 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase COP00_06525 SM00091 PAS domain COP00_06525 SM00382 ATPases associated with a variety of cellular activities COP00_06555 SM00448 cheY-homologous receiver domain COP00_06560 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_06575 SM00363 S4 RNA-binding domain COP00_06580 SM00861 Transketolase, pyrimidine binding domain COP00_06615 SM00878 Biotin carboxylase C-terminal domain COP00_06660 SM00382 ATPases associated with a variety of cellular activities COP00_06670 SM00841 Elongation factor P, C-terminal COP00_06670 SM01185 COP00_06670 COP00_06705 SM00529 Helix-turn-helix diphteria tox regulatory element COP00_06715 SM00450 Rhodanese Homology Domain COP00_06735 SM00487 DEAD-like helicases superfamily COP00_06735 SM00490 helicase superfamily c-terminal domain COP00_06750 SM00530 Helix-turn-helix XRE-family like proteins COP00_06810 SM00382 ATPases associated with a variety of cellular activities COP00_06835 SM00849 Metallo-beta-lactamase superfamily COP00_06855 SM00631 COP00_06855 COP00_06975 SM00028 Tetratricopeptide repeats COP00_07015 SM00382 ATPases associated with a variety of cellular activities COP00_07020 SM00382 ATPases associated with a variety of cellular activities COP00_07065 SM00257 Lysin motif COP00_07095 SM00382 ATPases associated with a variety of cellular activities COP00_07110 SM00518 AP endonuclease family 2 COP00_07180 SM00400 zinc finger COP00_07180 SM00493 COP00_07180 COP00_07195 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_07240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_07295 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_07310 SM00271 DnaJ molecular chaperone homology domain COP00_07330 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_07335 SM00838 Elongation factor G C-terminus COP00_07370 SM00849 Metallo-beta-lactamase superfamily COP00_07380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 COP00_07400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_07410 SM01103 COP00_07410 COP00_07450 SM00926 Molybdopterin oxidoreductase Fe4S4 domain COP00_07450 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region COP00_07500 SM00829 Enoylreductase COP00_07510 SM00903 Flavin reductase like domain COP00_07520 SM00422 helix_turn_helix, mercury resistance COP00_07570 SM00421 helix_turn_helix, Lux Regulon COP00_07570 SM00448 cheY-homologous receiver domain COP00_07575 SM00387 Histidine kinase-like ATPases COP00_07610 SM00450 Rhodanese Homology Domain COP00_07610 SM00849 Metallo-beta-lactamase superfamily COP00_07620 SM00421 helix_turn_helix, Lux Regulon COP00_07620 SM00448 cheY-homologous receiver domain COP00_07625 SM00387 Histidine kinase-like ATPases COP00_07645 SM00450 Rhodanese Homology Domain COP00_07680 SM00849 Metallo-beta-lactamase superfamily COP00_07685 SM00344 helix_turn_helix ASNC type COP00_07745 SM00342 helix_turn_helix, arabinose operon control protein COP00_07810 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase COP00_07850 SM00640 Glycosyl hydrolases family 32 COP00_07875 SM00382 ATPases associated with a variety of cellular activities COP00_07920 SM00318 Staphylococcal nuclease homologues COP00_07920 SM00894 Excalibur calcium-binding domain COP00_07925 SM00530 Helix-turn-helix XRE-family like proteins COP00_07955 SM00342 helix_turn_helix, arabinose operon control protein COP00_08120 SM00732 Likely ribonuclease with RNase H fold. COP00_08130 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain COP00_08140 SM00382 ATPases associated with a variety of cellular activities COP00_08145 SM00062 Bacterial periplasmic substrate-binding proteins COP00_08145 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. COP00_08180 SM00028 Tetratricopeptide repeats COP00_08200 SM00382 ATPases associated with a variety of cellular activities COP00_08235 SM00287 Bacterial SH3 domain homologues COP00_08235 SM00646 COP00_08235 COP00_08245 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_08245 SM00954 Region found in RelA / SpoT proteins COP00_08295 SM01323 COP00_08295 COP00_08315 SM00382 ATPases associated with a variety of cellular activities COP00_08320 SM00278 Helix-hairpin-helix DNA-binding motif class 1 COP00_08370 SM00257 Lysin motif COP00_08415 SM01317 COP00_08415 COP00_08450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_08520 SM00257 Lysin motif COP00_08535 SM01004 Delta-aminolevulinic acid dehydratase COP00_08570 SM00382 ATPases associated with a variety of cellular activities COP00_08570 SM00464 Found in ATP-dependent protease La (LON) COP00_08575 SM00382 ATPases associated with a variety of cellular activities COP00_08580 SM00382 ATPases associated with a variety of cellular activities COP00_08580 SM00994 ClpX C4-type zinc finger COP00_08580 SM01086 C-terminal, D2-small domain, of ClpB protein COP00_08605 SM01329 COP00_08605 COP00_08610 SM00917 LeuA allosteric (dimerisation) domain COP00_08640 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase COP00_08695 SM00909 Sporulation and spore germination COP00_08705 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_08710 SM00421 helix_turn_helix, Lux Regulon COP00_08760 SM00465 GIY-YIG type nucleases (URI domain) COP00_08770 SM00893 Electron transfer flavoprotein domain COP00_08775 SM00893 Electron transfer flavoprotein domain COP00_08820 SM00463 Small MutS-related domain COP00_08820 SM00533 DNA-binding domain of DNA mismatch repair MUTS family COP00_08820 SM00534 ATPase domain of DNA mismatch repair MUTS family COP00_08825 SM00278 Helix-hairpin-helix DNA-binding motif class 1 COP00_08825 SM00481 DNA polymerase alpha chain like domain COP00_08825 SM00483 DNA polymerase X family COP00_08855 SM00873 B3/4 domain COP00_08855 SM00874 tRNA synthetase B5 domain COP00_08855 SM00896 Ferredoxin-fold anticodon binding domain COP00_08865 SM00967 RNA 2'-O ribose methyltransferase substrate binding COP00_08900 SM00813 Alpha-L-arabinofuranosidase C-terminus COP00_08925 SM01007 Class II Aldolase and Adducin N-terminal domain COP00_08990 SM00448 cheY-homologous receiver domain COP00_08990 SM00850 LytTr DNA-binding domain COP00_08995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. COP00_08995 SM00387 Histidine kinase-like ATPases COP00_09005 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain COP00_09020 SM00382 ATPases associated with a variety of cellular activities COP00_09045 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain COP00_09050 SM00656 COP00_09050 COP00_09065 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain COP00_09065 SM01232 COP00_09065 COP00_09070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs COP00_09070 SM00474 3'-5' exonuclease COP00_09070 SM00475 5'-3' exonuclease COP00_09070 SM00482 DNA polymerase A domain COP00_09075 SM00091 PAS domain COP00_09075 SM00387 Histidine kinase-like ATPases COP00_09075 SM00388 His Kinase A (phosphoacceptor) domain COP00_09080 SM00448 cheY-homologous receiver domain COP00_09080 SM00862 Transcriptional regulatory protein, C terminal COP00_09090 SM01329 COP00_09090 COP00_09135 SM00919 Malic enzyme, NAD binding domain COP00_09135 SM01274 COP00_09135 COP00_09140 SM00481 DNA polymerase alpha chain like domain COP00_09180 SM00849 Metallo-beta-lactamase superfamily COP00_09200 SM00852 Probable molybdopterin binding domain COP00_09260 SM00981 COP00_09260 COP00_09295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. COP00_09300 SM00267 diguanylate cyclase COP00_09310 SM00363 S4 RNA-binding domain COP00_09310 SM01390 COP00_09310 COP00_09325 SM00363 S4 RNA-binding domain COP00_09340 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_09360 SM00354 helix_turn _helix lactose operon repressor COP00_09365 SM00830 Chorismate mutase type II COP00_09395 SM00382 ATPases associated with a variety of cellular activities COP00_09395 SM00843 COP00_09395 COP00_09430 SM00919 Malic enzyme, NAD binding domain COP00_09430 SM01274 COP00_09430 COP00_09435 SM00849 Metallo-beta-lactamase superfamily COP00_09455 SM00046 Diacylglycerol kinase catalytic domain (presumed) COP00_09490 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_09495 SM00363 S4 RNA-binding domain COP00_09515 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_09515 SM01134 COP00_09515 COP00_09545 SM00450 Rhodanese Homology Domain COP00_09665 SM00382 ATPases associated with a variety of cellular activities COP00_09675 SM00382 ATPases associated with a variety of cellular activities COP00_09680 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_09690 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_09720 SM00014 Acid phosphatase homologues COP00_09760 SM00382 ATPases associated with a variety of cellular activities COP00_09810 SM01234 COP00_09810 COP00_09815 SM00947 Carbonic anhydrase COP00_09860 SM00382 ATPases associated with a variety of cellular activities COP00_09870 SM00062 Bacterial periplasmic substrate-binding proteins COP00_09870 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. COP00_09885 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain COP00_10040 SM00422 helix_turn_helix, mercury resistance COP00_10050 SM00849 Metallo-beta-lactamase superfamily COP00_10070 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_10095 SM00028 Tetratricopeptide repeats COP00_10135 SM01058 CarD-like/TRCF domain COP00_10245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). COP00_10245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_10245 SM00319 Homologues of the ligand binding domain of Tar COP00_10250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). COP00_10250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_10250 SM00319 Homologues of the ligand binding domain of Tar COP00_10270 SM00642 Alpha-amylase domain COP00_10280 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_10280 SM01091 Transporter associated domain COP00_10330 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_10340 SM00344 helix_turn_helix ASNC type COP00_10365 SM01298 COP00_10365 COP00_10370 SM00479 COP00_10370 COP00_10395 SM00091 PAS domain COP00_10395 SM00387 Histidine kinase-like ATPases COP00_10400 SM00448 cheY-homologous receiver domain COP00_10410 SM00382 ATPases associated with a variety of cellular activities COP00_10490 SM00421 helix_turn_helix, Lux Regulon COP00_10490 SM00448 cheY-homologous receiver domain COP00_10495 SM00387 Histidine kinase-like ATPases COP00_10570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_10620 SM01002 Alanine dehydrogenase/PNT, C-terminal domain COP00_10620 SM01003 Alanine dehydrogenase/PNT, N-terminal domain COP00_10730 SM00028 Tetratricopeptide repeats COP00_10810 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_10865 SM00382 ATPases associated with a variety of cellular activities COP00_10870 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_10870 SM00866 COP00_10870 COP00_10905 SM01092 CO dehydrogenase flavoprotein C-terminal domain COP00_10910 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain COP00_10965 SM00382 ATPases associated with a variety of cellular activities COP00_10990 SM00382 ATPases associated with a variety of cellular activities COP00_10990 SM00930 COP00_10990 COP00_11005 SM00493 COP00_11005 COP00_11065 SM00382 ATPases associated with a variety of cellular activities COP00_11100 SM00822 COP00_11100 COP00_11110 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_11115 SM00448 cheY-homologous receiver domain COP00_11115 SM00862 Transcriptional regulatory protein, C terminal COP00_11120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_11120 SM00387 Histidine kinase-like ATPases COP00_11120 SM00388 His Kinase A (phosphoacceptor) domain COP00_11165 SM00421 helix_turn_helix, Lux Regulon COP00_11165 SM00448 cheY-homologous receiver domain COP00_11170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_11170 SM00387 Histidine kinase-like ATPases COP00_11220 SM00382 ATPases associated with a variety of cellular activities COP00_11250 SM00710 Parallel beta-helix repeats COP00_11265 SM00354 helix_turn _helix lactose operon repressor COP00_11280 SM00387 Histidine kinase-like ATPases COP00_11280 SM00388 His Kinase A (phosphoacceptor) domain COP00_11285 SM00448 cheY-homologous receiver domain COP00_11285 SM00862 Transcriptional regulatory protein, C terminal COP00_11290 SM00382 ATPases associated with a variety of cellular activities COP00_11410 SM00606 Cellulose Binding Domain Type IV COP00_11410 SM01217 COP00_11410 COP00_11415 SM00382 ATPases associated with a variety of cellular activities COP00_11480 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_11480 SM01134 COP00_11480 COP00_11500 SM01007 Class II Aldolase and Adducin N-terminal domain COP00_11520 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_11540 SM00450 Rhodanese Homology Domain COP00_11560 SM00835 Cupin COP00_11580 SM00606 Cellulose Binding Domain Type IV COP00_11600 SM00644 COP00_11600 COP00_11630 SM00710 Parallel beta-helix repeats COP00_11715 SM00507 HNH nucleases COP00_11855 SM00530 Helix-turn-helix XRE-family like proteins COP00_11860 SM00530 Helix-turn-helix XRE-family like proteins COP00_11865 SM00530 Helix-turn-helix XRE-family like proteins COP00_11905 SM00966 SpoVT / AbrB like domain COP00_11910 SM00530 Helix-turn-helix XRE-family like proteins COP00_11915 SM00530 Helix-turn-helix XRE-family like proteins COP00_11920 SM00530 Helix-turn-helix XRE-family like proteins COP00_11940 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_11940 SM00382 ATPases associated with a variety of cellular activities COP00_11995 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain COP00_12045 SM00421 helix_turn_helix, Lux Regulon COP00_12045 SM00448 cheY-homologous receiver domain COP00_12055 SM00382 ATPases associated with a variety of cellular activities COP00_12065 SM00422 helix_turn_helix, mercury resistance COP00_12065 SM00871 Bacterial transcription activator, effector binding domain COP00_12070 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain COP00_12090 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_12090 SM00895 COP00_12090 COP00_12185 SM00530 Helix-turn-helix XRE-family like proteins COP00_12220 SM01130 COP00_12220 COP00_12245 SM00640 Glycosyl hydrolases family 32 COP00_12255 SM00860 SMI1 / KNR4 family COP00_12265 SM00028 Tetratricopeptide repeats COP00_12295 SM00530 Helix-turn-helix XRE-family like proteins COP00_12310 SM00257 Lysin motif COP00_12310 SM00644 COP00_12310 COP00_12330 SM00710 Parallel beta-helix repeats COP00_12380 SM00635 Bacterial Ig-like domain 2 COP00_12410 SM00507 HNH nucleases COP00_12425 SM00507 HNH nucleases COP00_12445 SM00530 Helix-turn-helix XRE-family like proteins COP00_12605 SM00474 3'-5' exonuclease COP00_12605 SM00482 DNA polymerase A domain COP00_12640 SM00530 Helix-turn-helix XRE-family like proteins COP00_12750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_12760 SM00947 Carbonic anhydrase COP00_12775 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_12785 SM00382 ATPases associated with a variety of cellular activities COP00_12790 SM00387 Histidine kinase-like ATPases COP00_12790 SM00388 His Kinase A (phosphoacceptor) domain COP00_12795 SM00448 cheY-homologous receiver domain COP00_12795 SM00862 Transcriptional regulatory protein, C terminal COP00_12840 SM00028 Tetratricopeptide repeats COP00_12925 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_12965 SM00382 ATPases associated with a variety of cellular activities COP00_12970 SM00487 DEAD-like helicases superfamily COP00_12970 SM00490 helicase superfamily c-terminal domain COP00_12995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_12995 SM00245 tail specific protease COP00_13000 SM01329 COP00_13000 COP00_13015 SM00382 ATPases associated with a variety of cellular activities COP00_13035 SM00957 SecA DEAD-like domain COP00_13035 SM00958 SecA preprotein cross-linking domain COP00_13125 SM00487 DEAD-like helicases superfamily COP00_13125 SM00490 helicase superfamily c-terminal domain COP00_13135 SM00421 helix_turn_helix, Lux Regulon COP00_13135 SM00448 cheY-homologous receiver domain COP00_13140 SM00387 Histidine kinase-like ATPases COP00_13185 SM00984 UDP binding domain COP00_13205 SM00646 COP00_13205 COP00_13235 SM00382 ATPases associated with a variety of cellular activities COP00_13300 SM00047 Lysozyme subfamily 2 COP00_13300 SM00287 Bacterial SH3 domain homologues COP00_13335 SM00354 helix_turn _helix lactose operon repressor COP00_13380 SM00854 Bacterial capsule synthesis protein PGA_cap COP00_13395 SM00354 helix_turn _helix lactose operon repressor COP00_13410 SM00382 ATPases associated with a variety of cellular activities COP00_13455 SM00344 helix_turn_helix ASNC type COP00_13470 SM00984 UDP binding domain COP00_13495 SM00487 DEAD-like helicases superfamily COP00_13495 SM00490 helicase superfamily c-terminal domain COP00_13520 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_13520 SM01134 COP00_13520 COP00_13575 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_13585 SM00014 Acid phosphatase homologues COP00_13590 SM01131 COP00_13590 COP00_13605 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_13615 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_13615 SM01091 Transporter associated domain COP00_13625 SM00938 Nitrogen regulatory protein P-II COP00_13660 SM00155 Phospholipase D. Active site motifs. COP00_13670 SM00923 MbtH-like protein COP00_13720 SM00342 helix_turn_helix, arabinose operon control protein COP00_13745 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_13765 SM00327 von Willebrand factor (vWF) type A domain COP00_13770 SM00327 von Willebrand factor (vWF) type A domain COP00_13800 SM00382 ATPases associated with a variety of cellular activities COP00_13865 SM00226 Low molecular weight phosphatase family COP00_13910 SM00354 helix_turn _helix lactose operon repressor COP00_13920 SM00937 COP00_13920 COP00_13940 SM00919 Malic enzyme, NAD binding domain COP00_13940 SM01274 COP00_13940 COP00_13955 SM00357 Cold shock protein domain COP00_13955 SM00382 ATPases associated with a variety of cellular activities COP00_13955 SM00959 Rho termination factor, N-terminal domain COP00_13980 SM00448 cheY-homologous receiver domain COP00_14040 SM00836 DALR anticodon binding domain COP00_14040 SM01016 Arginyl tRNA synthetase N terminal dom COP00_14090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_14145 SM00346 helix_turn_helix isocitrate lyase regulation COP00_14185 SM00382 ATPases associated with a variety of cellular activities COP00_14195 SM00421 helix_turn_helix, Lux Regulon COP00_14195 SM00448 cheY-homologous receiver domain COP00_14215 SM00986 Uracil DNA glycosylase superfamily COP00_14215 SM00987 UreE urease accessory protein, C-terminal domain COP00_14235 SM00640 Glycosyl hydrolases family 32 COP00_14245 SM01061 CAT RNA binding domain COP00_14300 SM00382 ATPases associated with a variety of cellular activities COP00_14305 SM00382 ATPases associated with a variety of cellular activities COP00_14330 SM00421 helix_turn_helix, Lux Regulon COP00_14330 SM00448 cheY-homologous receiver domain COP00_14445 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase COP00_14475 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain COP00_14490 SM00346 helix_turn_helix isocitrate lyase regulation COP00_14525 SM00954 Region found in RelA / SpoT proteins COP00_14615 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_14615 SM00895 COP00_14615 COP00_14635 SM00382 ATPases associated with a variety of cellular activities COP00_14665 SM00382 ATPases associated with a variety of cellular activities COP00_14700 SM01060 COP00_14700 COP00_14715 SM00656 COP00_14715 COP00_14730 SM00382 ATPases associated with a variety of cellular activities COP00_14735 SM00382 ATPases associated with a variety of cellular activities COP00_14765 SM00919 Malic enzyme, NAD binding domain COP00_14765 SM01274 COP00_14765 COP00_14780 SM00870 COP00_14780 COP00_14785 SM00530 Helix-turn-helix XRE-family like proteins COP00_14795 SM00448 cheY-homologous receiver domain COP00_14795 SM00862 Transcriptional regulatory protein, C terminal COP00_14800 SM00387 Histidine kinase-like ATPases COP00_14805 SM00382 ATPases associated with a variety of cellular activities COP00_14835 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_14860 SM00894 Excalibur calcium-binding domain COP00_14935 SM00100 Cyclic nucleotide-monophosphate binding domain COP00_14935 SM00419 helix_turn_helix, cAMP Regulatory protein COP00_14950 SM00382 ATPases associated with a variety of cellular activities COP00_14955 SM00448 cheY-homologous receiver domain COP00_14955 SM00862 Transcriptional regulatory protein, C terminal COP00_14960 SM00387 Histidine kinase-like ATPases COP00_14960 SM00388 His Kinase A (phosphoacceptor) domain COP00_14990 SM00640 Glycosyl hydrolases family 32 COP00_15000 SM00354 helix_turn _helix lactose operon repressor COP00_15045 SM00530 Helix-turn-helix XRE-family like proteins COP00_15055 SM01060 COP00_15055 COP00_15075 SM01061 CAT RNA binding domain COP00_15085 SM00382 ATPases associated with a variety of cellular activities COP00_15130 SM00382 ATPases associated with a variety of cellular activities COP00_15135 SM00387 Histidine kinase-like ATPases COP00_15140 SM00448 cheY-homologous receiver domain COP00_15140 SM00862 Transcriptional regulatory protein, C terminal COP00_15170 SM00487 DEAD-like helicases superfamily COP00_15170 SM00490 helicase superfamily c-terminal domain COP00_15180 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain COP00_15190 SM01133 COP00_15190 COP00_15200 SM00028 Tetratricopeptide repeats COP00_15210 SM00267 diguanylate cyclase COP00_15305 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_15305 SM01134 COP00_15305 COP00_15325 SM00387 Histidine kinase-like ATPases COP00_15330 SM00382 ATPases associated with a variety of cellular activities COP00_15380 SM00899 COP00_15380 COP00_15395 SM00382 ATPases associated with a variety of cellular activities COP00_15400 SM00387 Histidine kinase-like ATPases COP00_15400 SM00388 His Kinase A (phosphoacceptor) domain COP00_15405 SM00448 cheY-homologous receiver domain COP00_15405 SM00862 Transcriptional regulatory protein, C terminal COP00_15445 SM00354 helix_turn _helix lactose operon repressor COP00_15465 SM00419 helix_turn_helix, cAMP Regulatory protein COP00_15470 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_15470 SM00895 COP00_15470 COP00_15485 SM01350 COP00_15485 COP00_15535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_15535 SM00387 Histidine kinase-like ATPases COP00_15535 SM00388 His Kinase A (phosphoacceptor) domain COP00_15540 SM00448 cheY-homologous receiver domain COP00_15540 SM00862 Transcriptional regulatory protein, C terminal COP00_15610 SM00382 ATPases associated with a variety of cellular activities COP00_15625 SM00421 helix_turn_helix, Lux Regulon COP00_15625 SM00448 cheY-homologous receiver domain COP00_15650 SM00382 ATPases associated with a variety of cellular activities COP00_15700 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_15705 SM00849 Metallo-beta-lactamase superfamily COP00_15720 SM00091 PAS domain COP00_15720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_15720 SM00387 Histidine kinase-like ATPases COP00_15720 SM00388 His Kinase A (phosphoacceptor) domain COP00_15725 SM00448 cheY-homologous receiver domain COP00_15725 SM00862 Transcriptional regulatory protein, C terminal COP00_15750 SM00788 Adenylosuccinate synthetase COP00_15760 SM00382 ATPases associated with a variety of cellular activities COP00_15790 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_15790 SM00866 COP00_15790 COP00_15810 SM00267 diguanylate cyclase COP00_15875 SM00470 ParB-like nuclease domain COP00_15895 SM00470 ParB-like nuclease domain COP00_15905 SM01228 COP00_15905 COP00_15915 SM00393 Putative single-stranded nucleic acids-binding domain COP00_15915 SM01245 COP00_15915 COP00_15935 SM00382 ATPases associated with a variety of cellular activities COP00_15935 SM00760 Bacterial dnaA protein helix-turn-helix domain COP00_15940 SM00480 DNA polymerase III beta subunit COP00_15960 SM00387 Histidine kinase-like ATPases COP00_15960 SM00433 TopoisomeraseII COP00_15965 SM00434 DNA Topoisomerase IV COP00_16000 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_16000 SM01240 COP00_16000 COP00_16005 SM00936 Penicillin-binding protein 5, C-terminal domain COP00_16040 SM00860 SMI1 / KNR4 family COP00_16070 SM00257 Lysin motif COP00_16070 SM00636 COP00_16070 COP00_16090 SM00382 ATPases associated with a variety of cellular activities COP00_16100 SM00493 COP00_16100 COP00_16195 SM00465 GIY-YIG type nucleases (URI domain) COP00_16205 SM00966 SpoVT / AbrB like domain COP00_16220 SM01208 COP00_16220 COP00_16225 SM00493 COP00_16225 COP00_16230 SM00650 Ribosomal RNA adenine dimethylases COP00_16275 SM01400 COP00_16275 COP00_16295 SM00487 DEAD-like helicases superfamily COP00_16295 SM00490 helicase superfamily c-terminal domain COP00_16295 SM00982 COP00_16295 COP00_16295 SM01058 CarD-like/TRCF domain COP00_16300 SM00966 SpoVT / AbrB like domain COP00_16315 SM00363 S4 RNA-binding domain COP00_16335 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_16350 SM00331 Sigma factor PP2C-like phosphatases COP00_16350 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain COP00_16360 SM00220 Serine/Threonine protein kinases, catalytic domain COP00_16365 SM00977 TilS substrate C-terminal domain COP00_16375 SM00382 ATPases associated with a variety of cellular activities COP00_16420 SM00905 Dihydroneopterin aldolase COP00_16430 SM00530 Helix-turn-helix XRE-family like proteins COP00_16535 SM00382 ATPases associated with a variety of cellular activities COP00_16535 SM01086 C-terminal, D2-small domain, of ClpB protein COP00_16540 SM00382 ATPases associated with a variety of cellular activities COP00_16550 SM00670 Large family of predicted nucleotide-binding domains COP00_16575 SM00840 COP00_16575 COP00_16585 SM00967 RNA 2'-O ribose methyltransferase substrate binding COP00_16610 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. COP00_16610 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. COP00_16615 SM00649 Ribosomal protein L11/L12 COP00_16645 SM00663 RNA polymerase I subunit A N-terminus COP00_16665 SM00838 Elongation factor G C-terminus COP00_16665 SM00889 Elongation factor G, domain IV COP00_16675 SM01403 COP00_16675 COP00_16695 SM01382 COP00_16695 COP00_16695 SM01383 COP00_16695 COP00_16710 SM00322 K homology RNA-binding domain COP00_16730 SM01374 COP00_16730 COP00_16735 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. COP00_16800 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_16820 SM00662 RNA polymerases D COP00_16830 SM00382 ATPases associated with a variety of cellular activities COP00_16835 SM00382 ATPases associated with a variety of cellular activities COP00_16865 SM00860 SMI1 / KNR4 family COP00_16875 SM00646 COP00_16875 COP00_16890 SM01251 COP00_16890 COP00_17045 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_17070 SM00382 ATPases associated with a variety of cellular activities COP00_17075 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_17100 SM00422 helix_turn_helix, mercury resistance COP00_17100 SM00871 Bacterial transcription activator, effector binding domain COP00_17110 SM00448 cheY-homologous receiver domain COP00_17110 SM00862 Transcriptional regulatory protein, C terminal COP00_17115 SM00387 Histidine kinase-like ATPases COP00_17115 SM00388 His Kinase A (phosphoacceptor) domain COP00_17120 SM00382 ATPases associated with a variety of cellular activities COP00_17135 SM00382 ATPases associated with a variety of cellular activities COP00_17150 SM01260 COP00_17150 COP00_17155 SM00382 ATPases associated with a variety of cellular activities COP00_17200 SM00422 helix_turn_helix, mercury resistance COP00_17240 SM00530 Helix-turn-helix XRE-family like proteins COP00_17345 SM00028 Tetratricopeptide repeats COP00_17350 SM00857 Resolvase, N terminal domain COP00_17375 SM00871 Bacterial transcription activator, effector binding domain COP00_17400 SM00871 Bacterial transcription activator, effector binding domain COP00_17425 SM00646 COP00_17425 COP00_17430 SM00287 Bacterial SH3 domain homologues COP00_17450 SM00966 SpoVT / AbrB like domain COP00_17460 SM00829 Enoylreductase COP00_17500 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_17520 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_17520 SM00895 COP00_17520 COP00_17575 SM00342 helix_turn_helix, arabinose operon control protein COP00_17580 SM00530 Helix-turn-helix XRE-family like proteins COP00_17630 SM00422 helix_turn_helix, mercury resistance COP00_17650 SM00327 von Willebrand factor (vWF) type A domain COP00_17665 SM00387 Histidine kinase-like ATPases COP00_17670 SM00448 cheY-homologous receiver domain COP00_17695 SM01130 COP00_17695 COP00_17710 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain COP00_17715 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_17715 SM00895 COP00_17715 COP00_17720 SM00858 COP00_17720 COP00_17755 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_17780 SM00422 helix_turn_helix, mercury resistance COP00_17810 SM00382 ATPases associated with a variety of cellular activities COP00_17825 SM00448 cheY-homologous receiver domain COP00_17825 SM00862 Transcriptional regulatory protein, C terminal COP00_17830 SM00387 Histidine kinase-like ATPases COP00_17830 SM00388 His Kinase A (phosphoacceptor) domain COP00_17845 SM00822 COP00_17845 COP00_17870 SM00870 COP00_17870 COP00_17935 SM00450 Rhodanese Homology Domain COP00_17960 SM00382 ATPases associated with a variety of cellular activities COP00_18045 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_18045 SM00382 ATPases associated with a variety of cellular activities COP00_18155 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_18180 SM00062 Bacterial periplasmic substrate-binding proteins COP00_18210 SM00382 ATPases associated with a variety of cellular activities COP00_18215 SM00382 ATPases associated with a variety of cellular activities COP00_18225 SM00219 Tyrosine kinase, catalytic domain COP00_18260 SM00382 ATPases associated with a variety of cellular activities COP00_18280 SM00823 Phosphopantetheine attachment site COP00_18285 SM00823 Phosphopantetheine attachment site COP00_18285 SM00824 Thioesterase COP00_18290 SM00824 Thioesterase COP00_18300 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_18315 SM00342 helix_turn_helix, arabinose operon control protein COP00_18315 SM00871 Bacterial transcription activator, effector binding domain COP00_18340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). COP00_18340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_18345 SM00382 ATPases associated with a variety of cellular activities COP00_18355 SM00062 Bacterial periplasmic substrate-binding proteins COP00_18360 SM00382 ATPases associated with a variety of cellular activities COP00_18385 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_18470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_18470 SM00387 Histidine kinase-like ATPases COP00_18475 SM00342 helix_turn_helix, arabinose operon control protein COP00_18475 SM00448 cheY-homologous receiver domain COP00_18485 SM00382 ATPases associated with a variety of cellular activities COP00_18500 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_18525 SM00710 Parallel beta-helix repeats COP00_18550 SM00422 helix_turn_helix, mercury resistance COP00_18555 SM00382 ATPases associated with a variety of cellular activities COP00_18565 SM00448 cheY-homologous receiver domain COP00_18565 SM00862 Transcriptional regulatory protein, C terminal COP00_18575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). COP00_18575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_18595 SM00382 ATPases associated with a variety of cellular activities COP00_18630 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_18635 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_18670 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_18680 SM00926 Molybdopterin oxidoreductase Fe4S4 domain COP00_18700 SM00422 helix_turn_helix, mercury resistance COP00_18745 SM00796 Allophanate hydrolase subunit 1 COP00_18750 SM00797 Allophanate hydrolase subunit 2 COP00_18755 SM00346 helix_turn_helix isocitrate lyase regulation COP00_18820 SM00344 helix_turn_helix ASNC type COP00_18825 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain COP00_18825 SM00437 Bacterial DNA topoisomerase I DNA-binding domain COP00_18825 SM00493 COP00_18825 COP00_18840 SM00830 Chorismate mutase type II COP00_18940 SM00091 PAS domain COP00_18940 SM00387 Histidine kinase-like ATPases COP00_18945 SM00448 cheY-homologous receiver domain COP00_18965 SM00382 ATPases associated with a variety of cellular activities COP00_19020 SM00487 DEAD-like helicases superfamily COP00_19020 SM00490 helicase superfamily c-terminal domain COP00_19045 SM01005 Alanine racemase, C-terminal domain COP00_19075 SM00331 Sigma factor PP2C-like phosphatases COP00_19095 SM00331 Sigma factor PP2C-like phosphatases COP00_19100 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_19100 SM00732 Likely ribonuclease with RNase H fold. COP00_19110 SM00731 SprT homologues. COP00_19200 SM00028 Tetratricopeptide repeats COP00_19205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_19235 SM00342 helix_turn_helix, arabinose operon control protein COP00_19255 SM01266 COP00_19255 COP00_19330 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_19375 SM00387 Histidine kinase-like ATPases COP00_19375 SM00388 His Kinase A (phosphoacceptor) domain COP00_19375 SM00448 cheY-homologous receiver domain COP00_19380 SM00448 cheY-homologous receiver domain COP00_19380 SM00862 Transcriptional regulatory protein, C terminal COP00_19485 SM00382 ATPases associated with a variety of cellular activities COP00_19520 SM00883 Chaperonin 10 Kd subunit COP00_19535 SM00530 Helix-turn-helix XRE-family like proteins COP00_19540 SM00530 Helix-turn-helix XRE-family like proteins COP00_19590 SM00885 D5 N terminal like COP00_19605 SM00891 ERCC4 domain COP00_19675 SM00507 HNH nucleases COP00_19755 SM00047 Lysozyme subfamily 2 COP00_19760 SM00710 Parallel beta-helix repeats COP00_19785 SM00644 COP00_19785 COP00_19800 SM00028 Tetratricopeptide repeats COP00_19960 SM00822 COP00_19960 COP00_19990 SM00825 Beta-ketoacyl synthase COP00_19995 SM00530 Helix-turn-helix XRE-family like proteins COP00_20005 SM00420 helix_turn_helix, Deoxyribose operon repressor COP00_20025 SM00642 Alpha-amylase domain COP00_20030 SM00354 helix_turn _helix lactose operon repressor COP00_20035 SM00642 Alpha-amylase domain COP00_20065 SM00642 Alpha-amylase domain COP00_20125 SM00342 helix_turn_helix, arabinose operon control protein COP00_20125 SM00871 Bacterial transcription activator, effector binding domain COP00_20155 SM00460 Transglutaminase/protease-like homologues COP00_20185 SM01001 AIR carboxylase COP00_20195 SM00998 Adenylosuccinate lyase C-terminus COP00_20210 SM01211 COP00_20210 COP00_20235 SM00798 AICARFT/IMPCHase bienzyme COP00_20235 SM00851 MGS-like domain COP00_20240 SM01209 COP00_20240 COP00_20240 SM01210 COP00_20240 COP00_20285 SM00278 Helix-hairpin-helix DNA-binding motif class 1 COP00_20285 SM00292 breast cancer carboxy-terminal domain COP00_20285 SM00532 Ligase N family COP00_20320 SM00845 GatB domain COP00_20330 SM00829 Enoylreductase COP00_20355 SM00046 Diacylglycerol kinase catalytic domain (presumed) COP00_20395 SM01061 CAT RNA binding domain COP00_20405 SM00028 Tetratricopeptide repeats COP00_20435 SM00382 ATPases associated with a variety of cellular activities COP00_20450 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_20475 SM00919 Malic enzyme, NAD binding domain COP00_20475 SM01274 COP00_20475 COP00_20490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). COP00_20510 SM00382 ATPases associated with a variety of cellular activities COP00_20515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_20565 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_20565 SM00876 Biotin and Thiamin Synthesis associated domain COP00_20575 SM00422 helix_turn_helix, mercury resistance COP00_20585 SM00382 ATPases associated with a variety of cellular activities COP00_20590 SM00487 DEAD-like helicases superfamily COP00_20590 SM00490 helicase superfamily c-terminal domain COP00_20615 SM00382 ATPases associated with a variety of cellular activities COP00_20630 SM00849 Metallo-beta-lactamase superfamily COP00_20635 SM00849 Metallo-beta-lactamase superfamily COP00_20650 SM00636 COP00_20650 COP00_20670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor COP00_20720 SM00642 Alpha-amylase domain COP00_20725 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_20725 SM00866 COP00_20725 COP00_20745 SM00028 Tetratricopeptide repeats COP00_20750 SM00560 LamG-like jellyroll fold domain COP00_20775 SM00984 UDP binding domain COP00_20835 SM00226 Low molecular weight phosphatase family COP00_20910 SM00478 endonuclease III COP00_20960 SM01061 CAT RNA binding domain COP00_20975 SM00861 Transketolase, pyrimidine binding domain COP00_20990 SM00382 ATPases associated with a variety of cellular activities COP00_21045 SM00342 helix_turn_helix, arabinose operon control protein COP00_21165 SM00478 endonuclease III COP00_21165 SM00525 COP00_21165 COP00_21195 SM00382 ATPases associated with a variety of cellular activities COP00_21200 SM00382 ATPases associated with a variety of cellular activities COP00_21205 SM00382 ATPases associated with a variety of cellular activities COP00_21355 SM00631 COP00_21355 COP00_21385 SM00382 ATPases associated with a variety of cellular activities COP00_21390 SM00062 Bacterial periplasmic substrate-binding proteins COP00_21410 SM00530 Helix-turn-helix XRE-family like proteins COP00_21420 SM00382 ATPases associated with a variety of cellular activities COP00_21455 SM00567 E-Z type HEAT repeats COP00_21485 SM00763 PrkA AAA domain COP00_21520 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_21525 SM00382 ATPases associated with a variety of cellular activities COP00_21530 SM00382 ATPases associated with a variety of cellular activities COP00_21540 SM00357 Cold shock protein domain COP00_21545 SM00382 ATPases associated with a variety of cellular activities COP00_21545 SM00930 COP00_21545 COP00_21590 SM00091 PAS domain COP00_21590 SM00387 Histidine kinase-like ATPases COP00_21590 SM00388 His Kinase A (phosphoacceptor) domain COP00_21595 SM00318 Staphylococcal nuclease homologues COP00_21605 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_21605 SM00382 ATPases associated with a variety of cellular activities COP00_21635 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_21650 SM00382 ATPases associated with a variety of cellular activities COP00_21670 SM00829 Enoylreductase COP00_21705 SM00530 Helix-turn-helix XRE-family like proteins COP00_21755 SM00098 Alkaline phosphatase homologues COP00_21765 SM00257 Lysin motif COP00_21785 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_21805 SM00342 helix_turn_helix, arabinose operon control protein COP00_21805 SM00871 Bacterial transcription activator, effector binding domain COP00_21810 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_21835 SM00563 Phosphate acyltransferases COP00_21850 SM01091 Transporter associated domain COP00_21855 SM00422 helix_turn_helix, mercury resistance COP00_21860 SM01091 Transporter associated domain COP00_21875 SM00646 COP00_21875 COP00_21975 SM00382 ATPases associated with a variety of cellular activities COP00_21980 SM00382 ATPases associated with a variety of cellular activities COP00_22000 SM00382 ATPases associated with a variety of cellular activities COP00_22040 SM00729 Elongator protein 3, MiaB family, Radical SAM COP00_22080 SM00382 ATPases associated with a variety of cellular activities COP00_22100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. COP00_22140 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_22175 SM00382 ATPases associated with a variety of cellular activities COP00_22255 SM00849 Metallo-beta-lactamase superfamily COP00_22275 SM00530 Helix-turn-helix XRE-family like proteins COP00_22320 SM00855 Phosphoglycerate mutase family COP00_22325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). COP00_22340 SM00914 COP00_22340 COP00_22375 SM00028 Tetratricopeptide repeats COP00_22380 SM00354 helix_turn _helix lactose operon repressor COP00_22440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_22440 SM00387 Histidine kinase-like ATPases COP00_22440 SM00388 His Kinase A (phosphoacceptor) domain COP00_22565 SM00342 helix_turn_helix, arabinose operon control protein COP00_22605 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_22625 SM01006 Siderophore biosynthesis protein domain COP00_22645 SM01018 B12 binding domain COP00_22660 SM00316 Ribosomal protein S1-like RNA-binding domain COP00_22690 SM01240 COP00_22690 COP00_22720 SM00859 Semialdehyde dehydrogenase, NAD binding domain COP00_22740 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain COP00_22745 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain COP00_22795 SM00825 Beta-ketoacyl synthase COP00_22805 SM00382 ATPases associated with a variety of cellular activities COP00_22810 SM00382 ATPases associated with a variety of cellular activities COP00_22860 SM00382 ATPases associated with a variety of cellular activities COP00_22865 SM00382 ATPases associated with a variety of cellular activities COP00_22925 SM01118 COP00_22925 COP00_22935 SM00954 Region found in RelA / SpoT proteins COP00_23170 SM00342 helix_turn_helix, arabinose operon control protein COP00_23250 SM00257 Lysin motif COP00_23290 SM00530 Helix-turn-helix XRE-family like proteins COP00_23340 SM00885 D5 N terminal like COP00_23355 SM00891 ERCC4 domain COP00_23405 SM00507 HNH nucleases COP00_23490 SM00047 Lysozyme subfamily 2 COP00_23495 SM00710 Parallel beta-helix repeats COP00_23520 SM00257 Lysin motif COP00_23520 SM00641 Glycosyl hydrolases family 25 COP00_23550 SM00644 COP00_23550 COP00_23605 SM00530 Helix-turn-helix XRE-family like proteins COP00_23625 SM00382 ATPases associated with a variety of cellular activities COP00_23660 SM00345 helix_turn_helix gluconate operon transcriptional repressor COP00_23660 SM00895 COP00_23660 COP00_23665 SM00829 Enoylreductase COP00_23735 SM00382 ATPases associated with a variety of cellular activities COP00_23745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain COP00_23745 SM00387 Histidine kinase-like ATPases COP00_23750 SM00342 helix_turn_helix, arabinose operon control protein COP00_23750 SM00448 cheY-homologous receiver domain COP00_23775 SM00342 helix_turn_helix, arabinose operon control protein COP00_23805 SM00849 Metallo-beta-lactamase superfamily COP00_23850 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. COP00_23875 SM00382 ATPases associated with a variety of cellular activities COP00_23890 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain COP00_23900 SM00382 ATPases associated with a variety of cellular activities COP00_23920 SM00656 COP00_23920 COP00_23945 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase COP00_23960 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_24005 SM00116 Domain in cystathionine beta-synthase and other proteins. COP00_24005 SM00924 MgtE intracellular N domain COP00_24015 SM00422 helix_turn_helix, mercury resistance COP00_24030 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_24040 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen COP00_24110 SM00091 PAS domain COP00_24110 SM00387 Histidine kinase-like ATPases COP00_24110 SM00388 His Kinase A (phosphoacceptor) domain COP00_24170 SM00387 Histidine kinase-like ATPases COP00_24170 SM00388 His Kinase A (phosphoacceptor) domain COP00_24175 SM00347 helix_turn_helix multiple antibiotic resistance protein COP00_24190 SM00382 ATPases associated with a variety of cellular activities COP00_24190 SM01086 C-terminal, D2-small domain, of ClpB protein COP00_24275 SM01040 BRO family, N-terminal domain COP00_24290 SM00530 Helix-turn-helix XRE-family like proteins COP00_24335 SM00474 3'-5' exonuclease COP00_24335 SM00482 DNA polymerase A domain COP00_24465 SM00530 Helix-turn-helix XRE-family like proteins COP00_24485 SM00507 HNH nucleases COP00_24500 SM00507 HNH nucleases COP00_24530 SM00635 Bacterial Ig-like domain 2