locus-tag class description PF00308 Bacterial dnaA protein PF08299 Bacterial dnaA protein helix-turn-helix PF11638 DnaA N-terminal domain PF00712 DNA polymerase III beta subunit, N-terminal domain PF02767 DNA polymerase III beta subunit, central domain PF02768 DNA polymerase III beta subunit, C-terminal domain PF01063 Amino-transferase class IV PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF06081 Aromatic acid exporter family member 1 PF00202 Aminotransferase class-III PF01022 Bacterial regulatory protein, arsR family PF07885 Ion channel PF00578 AhpC/TSA family PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF06153 Cyclic-di-AMP receptor PF06153 Cyclic-di-AMP receptor PF00809 Pterin binding enzyme PF01475 Ferric uptake regulator family PF11023 Zinc-ribbon containing domain PF18576 Helix-turn-helix domain PF14540 Nucleotidyltransferase-like PF02152 Dihydroneopterin aldolase PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01610 Transposase PF13542 Helix-turn-helix domain of transposase family ISL3 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PF01381 Helix-turn-helix PF05105 Bacteriophage holin family PF01520 N-acetylmuramoyl-L-alanine amidase PF05036 Sporulation related domain PF01520 N-acetylmuramoyl-L-alanine amidase PF05036 Sporulation related domain PF01520 N-acetylmuramoyl-L-alanine amidase PF05036 Sporulation related domain PF00271 Helicase conserved C-terminal domain PF00176 SNF2 family N-terminal domain PF00271 Helicase conserved C-terminal domain PF00176 SNF2 family N-terminal domain PF01207 Dihydrouridine synthase (Dus) PF06013 Proteins of 100 residues with WXG PF10140 WXG100 protein secretion system (Wss), protein YukC PF01580 FtsK/SpoIIIE family PF12538 DNA transporter PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF13115 YtkA-like PF00293 NUDIX domain PF00440 Bacterial regulatory proteins, tetR family PF12833 Helix-turn-helix domain PF01497 Periplasmic binding protein PF01497 Periplasmic binding protein PF00202 Aminotransferase class-III PF02954 Bacterial regulatory protein, Fis family PF13188 PAS domain PF00158 Sigma-54 interaction domain PF13520 Amino acid permease PF00171 Aldehyde dehydrogenase family PF04298 Putative neutral zinc metallopeptidase PF04298 Putative neutral zinc metallopeptidase PF02649 Type I GTP cyclohydrolase folE2 PF17934 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF17934 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF17934 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF17934 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF00005 ABC transporter PF13732 Domain of unknown function (DUF4162) PF00171 Aldehyde dehydrogenase family PF00171 Aldehyde dehydrogenase family PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00183 Hsp90 protein PF13536 Putative multidrug resistance efflux transporter PF01638 HxlR-like helix-turn-helix PF03358 NADPH-dependent FMN reductase PF00248 Aldo/keto reductase family PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00210 Ferritin-like domain PF08331 Domain of unknown function (DUF1730) PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF12671 Putative amidase domain PF00588 SpoU rRNA Methylase family PF01032 FecCD transport family PF01032 FecCD transport family PF00005 ABC transporter PF01497 Periplasmic binding protein PF08298 PrkA AAA domain PF06798 PrkA serine protein kinase C-terminal domain PF10502 Signal peptidase, peptidase S26 PF04285 Protein of unknown function (DUF444) PF02915 Rubrerythrin PF00202 Aminotransferase class-III PF01497 Periplasmic binding protein PF01032 FecCD transport family PF00005 ABC transporter PF03749 Sugar fermentation stimulation protein RE domain PF17746 SfsA N-terminal OB domain PF04235 Protein of unknown function (DUF418) PF04235 Protein of unknown function (DUF418) PF04235 Protein of unknown function (DUF418) PF04235 Protein of unknown function (DUF418) PF04235 Protein of unknown function (DUF418) PF00795 Carbon-nitrogen hydrolase PF00881 Nitroreductase family PF07730 Histidine kinase PF07730 Histidine kinase PF07730 Histidine kinase PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00005 ABC transporter PF00005 ABC transporter PF02082 Transcriptional regulator PF00970 Oxidoreductase FAD-binding domain PF00042 Globin PF00175 Oxidoreductase NAD-binding domain PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00155 Aminotransferase class I and II PF07477 Glycosyl hydrolase family 67 C-terminus PF07488 Glycosyl hydrolase family 67 middle domain PF03648 Glycosyl hydrolase family 67 N-terminus PF03786 D-mannonate dehydratase (UxuA) PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00106 short chain dehydrogenase PF01229 Glycosyl hydrolases family 39 PF05067 Manganese containing catalase PF05067 Manganese containing catalase PF00180 Isocitrate/isopropylmalate dehydrogenase PF01557 Fumarylacetoacetate (FAA) hydrolase family PF06018 CodY GAF-like domain PF17853 GGDEF-like domain PF13556 PucR C-terminal helix-turn-helix domain PF00583 Acetyltransferase (GNAT) family PF00005 ABC transporter PF17912 MalK OB fold domain PF03459 TOBE domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF13416 Bacterial extracellular solute-binding protein PF03009 Glycerophosphoryl diester phosphodiesterase family PF00005 ABC transporter PF00005 ABC transporter PF01032 FecCD transport family PF01032 FecCD transport family PF00343 Carbohydrate phosphorylase PF08323 Starch synthase catalytic domain PF00534 Glycosyl transferases group 1 PF00483 Nucleotidyl transferase PF00483 Nucleotidyl transferase PF00583 Acetyltransferase (GNAT) family PF00795 Carbon-nitrogen hydrolase PF04309 Glycerol-3-phosphate responsive antiterminator PF00230 Major intrinsic protein PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF01047 MarR family PF00480 ROK family PF01266 FAD dependent oxidoreductase PF16901 C-terminal domain of alpha-glycerophosphate oxidase PF02675 S-adenosylmethionine decarboxylase PF03323 Bacillus/Clostridium GerA spore germination protein PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF10509 Galactokinase galactose-binding signature PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF16363 GDP-mannose 4,6 dehydratase PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain PF01906 Putative heavy-metal-binding PF04293 SpoVR like protein PF04293 SpoVR like protein PF01839 FG-GAP repeat PF18370 Rhamnogalacturonan I lyases beta-sheet domain PF01839 FG-GAP repeat PF18370 Rhamnogalacturonan I lyases beta-sheet domain PF13472 GDSL-like Lipase/Acylhydrolase family PF13416 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF07470 Glycosyl Hydrolase Family 88 PF04854 Protein of unknown function, DUF624 PF04854 Protein of unknown function, DUF624 PF04854 Protein of unknown function, DUF624 PF04854 Protein of unknown function, DUF624 PF04854 Protein of unknown function, DUF624 PF04854 Protein of unknown function, DUF624 PF04854 Protein of unknown function, DUF624 PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF02743 Cache domain PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF12833 Helix-turn-helix domain PF00072 Response regulator receiver domain PF12833 Helix-turn-helix domain PF00072 Response regulator receiver domain PF12833 Helix-turn-helix domain PF00072 Response regulator receiver domain PF12833 Helix-turn-helix domain PF00072 Response regulator receiver domain PF12833 Helix-turn-helix domain PF00072 Response regulator receiver domain PF12833 Helix-turn-helix domain PF00072 Response regulator receiver domain PF12833 Helix-turn-helix domain PF00072 Response regulator receiver domain PF00210 Ferritin-like domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00155 Aminotransferase class I and II PF00209 Sodium:neurotransmitter symporter family PF00209 Sodium:neurotransmitter symporter family PF01979 Amidohydrolase family PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF00364 Biotin-requiring enzyme PF00682 HMGL-like PF00378 Enoyl-CoA hydratase/isomerase PF00378 Enoyl-CoA hydratase/isomerase PF01039 Carboxyl transferase domain PF16177 Acetyl-coenzyme A synthetase N-terminus PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00269 Small, acid-soluble spore proteins, alpha/beta type PF00269 Small, acid-soluble spore proteins, alpha/beta type PF00269 Small, acid-soluble spore proteins, alpha/beta type PF00005 ABC transporter PF17912 MalK OB fold domain PF03459 TOBE domain PF13556 PucR C-terminal helix-turn-helix domain PF14398 YheC/D like ATP-grasp PF04286 Protein of unknown function (DUF445) PF06133 Control of competence regulator ComK, YlbF/YmcA PF01554 MatE PF04055 Radical SAM superfamily PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF16736 Single Cache-like PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF01725 Ham1 family PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) PF14120 YhzD-like protein PF00005 ABC transporter PF00005 ABC transporter PF00005 ABC transporter PF00005 ABC transporter PF13732 Domain of unknown function (DUF4162) PF02096 60Kd inner membrane protein PF05848 CtsR N-terminal HTH domain PF17727 CtsR C-terminal dimerization domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF07690 Major Facilitator Superfamily PF07690 Major Facilitator Superfamily PF07690 Major Facilitator Superfamily PF01966 HD domain PF01336 OB-fold nucleic acid binding domain PF09680 Family of unknown function PF02151 UvrB/uvrC motif PF11667 Putative zincin peptidase PF01047 MarR family PF00266 Aminotransferase class-V PF01230 HIT domain PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain PF00005 ABC transporter PF05975 Bacterial ABC transporter protein EcsB PF12787 EcsC protein family PF02683 Cytochrome C biogenesis protein transmembrane region PF04012 PspA/IM30 family PF09922 Cell wall-active antibiotics response 4TMS YvqF PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07730 Histidine kinase PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF02861 Clp amino terminal domain, pathogenicity island component PF10431 C-terminal, D2-small domain, of ClpB protein PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF01208 Uroporphyrinogen decarboxylase (URO-D) PF00762 Ferrochelatase PF01593 Flavin containing amine oxidoreductase PF03060 Nitronate monooxygenase PF00528 Binding-protein-dependent transport system inner membrane component PF18073 Rubredoxin metal binding domain PF00005 ABC transporter PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain PF14682 Sporulation initiation phospho-transferase B, C-terminal PF09269 Domain of unknown function (DUF1967) PF01018 GTP1/OBG PF01926 50S ribosome-binding GTPase PF01842 ACT domain PF00800 Prephenate dehydratase PF02829 3H domain PF08279 HTH domain PF00266 Aminotransferase class-V PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain PF02445 Quinolinate synthetase A protein PF02457 DisA bacterial checkpoint controller nucleotide-binding PF10635 DisA bacterial checkpoint controller linker region PF01476 LysM domain PF08955 BofC C-terminal domain PF08977 Bypass of Forespore C, N terminal PF07499 RuvA, C-terminal domain PF01330 RuvA N terminal domain PF17864 RuvB AAA lid domain PF05491 RuvB C-terminal winged helix domain PF05496 Holliday junction DNA helicase RuvB P-loop domain PF11146 Protein of unknown function (DUF2905) PF02547 Queuosine biosynthesis protein PF01702 Queuine tRNA-ribosyltransferase PF02699 Preprotein translocase subunit PF12670 Protein of unknown function (DUF3792) PF03600 Citrate transporter PF04239 Protein of unknown function (DUF421) PF01943 Polysaccharide biosynthesis protein PF14667 Polysaccharide biosynthesis C-terminal domain PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF07549 SecD/SecF GG Motif PF02355 Protein export membrane protein PF01545 Cation efflux family PF16916 Dimerisation domain of Zinc Transporter PF01545 Cation efflux family PF16916 Dimerisation domain of Zinc Transporter PF06305 Lipopolysaccharide assembly protein A domain PF01368 DHH family PF02272 DHHA1 domain PF17768 RecJ OB domain PF10141 Single-strand DNA-specific exonuclease, C terminal domain PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PF00156 Phosphoribosyl transferase domain PF13291 ACT domain PF04607 Region found in RelA / SpoT proteins PF02824 TGS domain PF02580 D-Tyr-tRNA(Tyr) deacylase PF01547 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF01261 Xylose isomerase-like TIM barrel PF00356 Bacterial regulatory proteins, lacI family PF02542 YgbB family PF03129 Anticodon binding domain PF13393 Histidyl-tRNA synthetase PF02938 GAD domain PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF00899 ThiF family PF16193 AAA C-terminal domain PF12002 MgsA AAA+ ATPase C terminal PF05496 Holliday junction DNA helicase RuvB P-loop domain PF02082 Transcriptional regulator PF00266 Aminotransferase class-V PF00749 tRNA synthetases class I (E and Q), catalytic domain PF14490 Helix-hairpin-helix containing domain PF18335 ATP-dependent RecD-like DNA helicase SH3 domain PF13538 UvrD-like helicase C-terminal domain PF05239 PRC-barrel domain PF01594 AI-2E family transporter PF02272 DHHA1 domain PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF06135 IreB regulatory phosphoprotein PF03652 Holliday junction resolvase PF06949 Protein of unknown function (DUF1292) PF00132 Bacterial transferase hexapeptide (six repeats) PF06426 Serine acetyltransferase, N-terminal PF02618 YceG-like family PF01596 O-methyltransferase PF01136 Peptidase family U32 PF01136 Peptidase family U32 PF16325 Peptidase family U32 C-terminal domain PF00485 Phosphoribulokinase / Uridine kinase family PF01272 Transcription elongation factor, GreA/GreB, C-term PF03449 Transcription elongation factor, N-terminal PF01048 Phosphorylase superfamily PF09190 DALR domain PF01406 tRNA synthetases class I (C) catalytic domain PF01235 Sodium:alanine symporter family PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF01381 Helix-turn-helix PF04239 Protein of unknown function (DUF421) PF04239 Protein of unknown function (DUF421) PF00636 Ribonuclease III domain PF01520 N-acetylmuramoyl-L-alanine amidase PF05036 Sporulation related domain PF01520 N-acetylmuramoyl-L-alanine amidase PF05036 Sporulation related domain PF13302 Acetyltransferase (GNAT) domain PF13302 Acetyltransferase (GNAT) domain PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF03422 Carbohydrate binding module (family 6) PF00457 Glycosyl hydrolases family 11 PF01522 Polysaccharide deacetylase PF18416 N-acetylglucosamine binding protein domain 2 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading PF00199 Catalase PF06628 Catalase-related immune-responsive PF00216 Bacterial DNA-binding protein PF01066 CDP-alcohol phosphatidyltransferase PF05991 YacP-like NYN domain PF02666 Phosphatidylserine decarboxylase PF03334 Na+/H+ antiporter subunit PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) PF01899 Na+/H+ ion antiporter subunit PF00361 Proton-conducting membrane transporter PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L PF04039 Domain related to MnhB subunit of Na+/H+ antiporter PF13244 Domain of unknown function (DUF4040) PF00361 Proton-conducting membrane transporter PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF08970 Sporulation inhibitor A PF08970 Sporulation inhibitor A PF01926 50S ribosome-binding GTPase PF18317 Shikimate 5'-dehydrogenase C-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF08501 Shikimate dehydrogenase substrate binding domain PF01985 CRS1 / YhbY (CRM) domain PF01467 Cytidylyltransferase-like PF01966 HD domain PF17783 CvfB-like winged helix domain PF13509 S1 domain PF13649 Methyltransferase domain PF00471 Ribosomal protein L33 PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF10752 Protein of unknown function (DUF2533) PF10531 SLBB domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF03772 Competence protein PF13567 Domain of unknown function (DUF4131) PF00753 Metallo-beta-lactamase superfamily PF14141 YqzM-like protein PF06144 DNA polymerase III, delta subunit PF01649 Ribosomal protein S20 PF03418 Germination protease PF00584 SecE/Sec61-gamma subunits of protein translocation complex PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF06421 GTP-binding protein LepA C-terminus PF06969 HemN C-terminal domain PF04055 Radical SAM superfamily PF01628 HrcA protein C terminal domain PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PF01025 GrpE PF00012 Hsp70 protein PF00226 DnaJ domain PF01556 DnaJ C terminal domain PF00684 DnaJ central domain PF04452 RNA methyltransferase PF00467 KOW motif PF02357 Transcription termination factor nusG PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF01791 DeoC/LacD family aldolase PF02690 Na+/Pi-cotransporter PF01165 Ribosomal protein S21 PF09424 Yqey-like protein PF01957 NfeD-like C-terminal, partner-binding PF01972 Serine dehydrogenase proteinase PF12127 SigmaW regulon antibacterial PF07873 YabP family PF06898 Putative stage IV sporulation protein YqfD PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF02562 PhoH-like protein PF07698 7TM receptor with intracellular HD hydrolase PF07697 7TM-HD extracellular PF01966 HD domain PF02130 Uncharacterized protein family UPF0054 PF01219 Prokaryotic diacylglycerol kinase PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF07650 KH domain PF01926 50S ribosome-binding GTPase PF14006 YqzL-like protein PF02565 Recombination protein O C terminal PF11967 Recombination protein O N terminal PF02091 Glycyl-tRNA synthetase alpha subunit PF00687 Ribosomal protein L1p/L10e family PF05746 DALR anticodon binding domain PF02092 Glycyl-tRNA synthetase beta subunit PF00571 CBS domain PF08279 HTH domain PF03618 Kinase/pyrophosphorylase PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 PF10410 DnaB-helicase binding domain of primase PF08275 DNA primase catalytic core, N-terminal domain PF01807 CHC2 zinc finger PF03979 Sigma-70 factor, region 1.1 PF00140 Sigma-70 factor, region 1.2 PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF04816 tRNA (adenine(22)-N(1))-methyltransferase PF01784 NIF3 (NGG1p interacting factor 3) PF00466 Ribosomal protein L10 PF02401 LytB protein PF02559 CarD-like/TRCF domain PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF01261 Xylose isomerase-like TIM barrel PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF13188 PAS domain PF13426 PAS domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF13188 PAS domain PF13426 PAS domain PF00005 ABC transporter PF00950 ABC 3 transport family PF00542 Ribosomal protein L7/L12 C-terminal domain PF16320 Ribosomal protein L7/L12 dimerisation domain PF02503 Polyphosphate kinase middle domain PF13090 Polyphosphate kinase C-terminal domain 2 PF17941 Polyphosphate kinase C-terminal domain 1 PF13089 Polyphosphate kinase N-terminal domain PF02541 Ppx/GppA phosphatase family PF00005 ABC transporter PF00950 ABC 3 transport family PF01475 Ferric uptake regulator family PF09680 Family of unknown function PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) PF04551 GcpE protein PF07690 Major Facilitator Superfamily PF06207 Protein of unknown function (DUF1002) PF01895 PhoU domain PF05175 Methyltransferase small domain PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF07690 Major Facilitator Superfamily PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF00483 Nucleotidyl transferase PF01812 5-formyltetrahydrofolate cyclo-ligase family PF00899 ThiF family PF01694 Rhomboid family PF03323 Bacillus/Clostridium GerA spore germination protein PF03323 Bacillus/Clostridium GerA spore germination protein PF00480 ROK family PF00480 ROK family PF10415 Fumarase C C-terminus PF00206 Lyase PF04563 RNA polymerase beta subunit PF04561 RNA polymerase Rpb2, domain 2 PF04565 RNA polymerase Rpb2, domain 3 PF10385 RNA polymerase beta subunit external 1 domain PF00562 RNA polymerase Rpb2, domain 6 PF04560 RNA polymerase Rpb2, domain 7 PF07992 Pyridine nucleotide-disulphide oxidoreductase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02581 Thiamine monophosphate synthase PF05690 Thiazole biosynthesis protein ThiG PF01266 FAD dependent oxidoreductase PF01266 FAD dependent oxidoreductase PF08543 Phosphomethylpyrimidine kinase PF04997 RNA polymerase Rpb1, domain 1 PF00623 RNA polymerase Rpb1, domain 2 PF04983 RNA polymerase Rpb1, domain 3 PF05000 RNA polymerase Rpb1, domain 4 PF04998 RNA polymerase Rpb1, domain 5 PF01910 Thiamine-binding protein PF13673 Acetyltransferase (GNAT) domain PF00756 Putative esterase PF04608 Phosphatidylglycerophosphatase A PF04608 Phosphatidylglycerophosphatase A PF01381 Helix-turn-helix PF10415 Fumarase C C-terminus PF00206 Lyase PF07662 Na+ dependent nucleoside transporter C-terminus PF01773 Na+ dependent nucleoside transporter N-terminus PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PF01641 SelR domain PF01625 Peptide methionine sulfoxide reductase PF00583 Acetyltransferase (GNAT) family PF03845 Spore germination protein PF03845 Spore germination protein PF03323 Bacillus/Clostridium GerA spore germination protein PF03323 Bacillus/Clostridium GerA spore germination protein PF03323 Bacillus/Clostridium GerA spore germination protein PF00164 Ribosomal protein S12/S23 PF02028 BCCT, betaine/carnitine/choline family transporter PF02028 BCCT, betaine/carnitine/choline family transporter PF01925 Sulfite exporter TauE/SafE PF01925 Sulfite exporter TauE/SafE PF00497 Bacterial extracellular solute-binding proteins, family 3 PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF06081 Aromatic acid exporter family member 1 PF11728 Putative aromatic acid exporter C-terminal domain PF03734 L,D-transpeptidase catalytic domain PF00177 Ribosomal protein S7p/S5e PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00817 impB/mucB/samB family PF11799 impB/mucB/samB family C-terminal domain PF01312 FlhB HrpN YscU SpaS Family PF01312 FlhB HrpN YscU SpaS Family PF02561 Flagellar protein FliS PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF03764 Elongation factor G, domain IV PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF00700 Bacterial flagellin C-terminal helical region PF00669 Bacterial flagellin N-terminal helical region PF03885 Protein of unknown function (DUF327) PF00724 NADH:flavin oxidoreductase / NADH oxidase family PF01507 Phosphoadenosine phosphosulfate reductase family PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF03143 Elongation factor Tu C-terminal domain PF01747 ATP-sulfurylase PF14306 PUA-like domain PF01384 Phosphate transporter family PF00082 Subtilase family PF04748 Divergent polysaccharide deacetylase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF13411 MerR HTH family regulatory protein PF13411 MerR HTH family regulatory protein PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01903 CbiX PF00338 Ribosomal protein S10p/S20e PF10414 Sirohaem synthase dimerisation region PF14824 Sirohaem biosynthesis protein central PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF00696 Amino acid kinase family PF13840 ACT domain PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF00171 Aldehyde dehydrogenase family PF00696 Amino acid kinase family PF01472 PUA domain PF00106 short chain dehydrogenase PF00297 Ribosomal protein L3 PF00733 Asparagine synthase PF13537 Glutamine amidotransferase domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF08447 PAS fold PF13426 PAS domain PF00156 Phosphoribosyl transferase domain PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PF00356 Bacterial regulatory proteins, lacI family PF00573 Ribosomal protein L4/L1 family PF03773 Predicted permease PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF02673 Bacitracin resistance protein BacA PF00578 AhpC/TSA family PF00293 NUDIX domain PF00293 NUDIX domain PF01944 Stage II sporulation protein M PF00276 Ribosomal protein L23 PF01475 Ferric uptake regulator family PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF01676 Metalloenzyme superfamily PF01048 Phosphorylase superfamily PF01048 Phosphorylase superfamily PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain PF08327 Activator of Hsp90 ATPase homolog 1-like protein PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF01740 STAS domain PF00181 Ribosomal Proteins L2, RNA binding domain PF03947 Ribosomal Proteins L2, C-terminal domain PF13581 Histidine kinase-like ATPase domain PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF03862 SpoVAC/SpoVAEB sporulation membrane protein PF03862 SpoVAC/SpoVAEB sporulation membrane protein PF07451 Stage V sporulation protein AD (SpoVAD) PF07451 Stage V sporulation protein AD (SpoVAD) PF14097 Stage V sporulation protein AE1 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF00203 Ribosomal protein S19 PF00596 Class II Aldolase and Adducin N-terminal domain PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF06134 L-rhamnose isomerase (RhaA) PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region PF01872 RibD C-terminal domain PF00677 Lumazine binding domain PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 GTP cyclohydrolase II PF00885 6,7-dimethyl-8-ribityllumazine synthase PF00237 Ribosomal protein L22p/L17e PF00583 Acetyltransferase (GNAT) family PF03745 Domain of unknown function (DUF309) PF02616 Segregation and condensation protein ScpA PF04079 Segregation and condensation complex subunit ScpB PF02777 Iron/manganese superoxide dismutases, C-terminal domain PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain PF04239 Protein of unknown function (DUF421) PF04239 Protein of unknown function (DUF421) PF07650 KH domain PF00189 Ribosomal protein S3, C-terminal domain PF03862 SpoVAC/SpoVAEB sporulation membrane protein PF04239 Protein of unknown function (DUF421) PF04239 Protein of unknown function (DUF421) PF04239 Protein of unknown function (DUF421) PF04239 Protein of unknown function (DUF421) PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF07670 Nucleoside recognition PF07670 Nucleoside recognition PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF00578 AhpC/TSA family PF00578 AhpC/TSA family PF00252 Ribosomal protein L16p/L10e PF05140 ResB-like family PF01578 Cytochrome C assembly protein PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF18698 Histidine kinase sensor domain PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF18698 Histidine kinase sensor domain PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF18698 Histidine kinase sensor domain PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF01497 Periplasmic binding protein PF01032 FecCD transport family PF00005 ABC transporter PF00831 Ribosomal L29 protein PF03186 CobD/Cbib protein PF00155 Aminotransferase class I and II PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase PF07685 CobB/CobQ-like glutamine amidotransferase domain PF02654 Cobalamin-5-phosphate synthase PF01923 Cobalamin adenosyltransferase PF04294 VanW like protein PF00366 Ribosomal protein S17 PF05504 Spore germination B3/ GerAC like, C-terminal PF01551 Peptidase family M23 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF01842 ACT domain PF01476 LysM domain PF00246 Zinc carboxypeptidase PF00719 Inorganic pyrophosphatase PF14493 Helix-turn-helix domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF00238 Ribosomal protein L14p/L23e PF02517 CPBP intramembrane metalloprotease PF06094 Gamma-glutamyl cyclotransferase, AIG2-like PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00583 Acetyltransferase (GNAT) family PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF00467 KOW motif PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 PF00149 Calcineurin-like phosphoesterase PF05389 Negative regulator of genetic competence (MecA) PF07478 D-ala D-ala ligase C-terminus PF01820 D-ala D-ala ligase N-terminus PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF00710 Asparaginase, N-terminal PF17763 Glutaminase/Asparaginase C-terminal domain PF13367 PrsW family intramembrane metalloprotease PF01053 Cys/Met metabolism PLP-dependent enzyme PF00281 Ribosomal protein L5 PF00673 ribosomal L5P family C-terminus PF01053 Cys/Met metabolism PLP-dependent enzyme PF02219 Methylenetetrahydrofolate reductase PF02574 Homocysteine S-methyltransferase PF02310 B12 binding domain PF02607 B12 binding domain PF02965 Vitamin B12 dependent methionine synthase, activation domain PF00809 Pterin binding enzyme PF02574 Homocysteine S-methyltransferase PF07486 Cell Wall Hydrolase PF01471 Putative peptidoglycan binding domain PF14620 YpeB sporulation PF02224 Cytidylate kinase PF01553 Acyltransferase PF00575 S1 RNA binding domain PF00253 Ribosomal protein S14p/S29e PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal PF01926 50S ribosome-binding GTPase PF02660 Glycerol-3-phosphate acyltransferase PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF01797 Transposase IS200 like PF10966 Protein of unknown function (DUF2768) PF09547 Stage IV sporulation protein A (spore_IV_A) PF01227 GTP cyclohydrolase I PF02081 Tryptophan RNA-binding attenuator protein PF00410 Ribosomal protein S8 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 PF01209 ubiE/COQ5 methyltransferase family PF01040 UbiA prenyltransferase family PF02441 Flavoprotein PF02621 Menaquinone biosynthesis PF00348 Polyprenyl synthetase PF00334 Nucleoside diphosphate kinase PF01739 CheR methyltransferase, SAM binding domain PF03705 CheR methyltransferase, all-alpha domain PF01264 Chorismate synthase PF01761 3-dehydroquinate synthase PF00347 Ribosomal protein L6 PF07736 Chorismate mutase type I PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF02885 Glycosyl transferase family, helical bundle domain PF00591 Glycosyl transferase family, a/b domain PF00218 Indole-3-glycerol phosphate synthase PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase PF00291 Pyridoxal-phosphate dependent enzyme PF00290 Tryptophan synthase alpha chain PF00155 Aminotransferase class I and II PF01842 ACT domain PF02153 Prephenate dehydrogenase PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast PF01979 Amidohydrolase family PF08858 IDEAL domain PF08864 UPF0302 domain PF10673 Protein of unknown function (DUF2487) PF00355 Rieske [2Fe-2S] domain PF00033 Cytochrome b/b6/petB PF00032 Cytochrome b(C-terminal)/b6/petD PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF07187 Protein of unknown function (DUF1405) PF00333 Ribosomal protein S5, N-terminal domain PF03719 Ribosomal protein S5, C-terminal domain PF10035 Uncharacterized protein conserved in bacteria (DUF2179) PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 PF03819 MazG nucleotide pyrophosphohydrolase domain PF05173 Dihydrodipicolinate reductase, C-terminus PF01113 Dihydrodipicolinate reductase, N-terminus PF02142 MGS-like domain PF02585 GlcNAc-PI de-N-acetylase PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01743 Poly A polymerase head domain PF12627 Probable RNA and SrmB- binding site of polymerase A PF13735 tRNA nucleotidyltransferase domain 2 putative PF02237 Biotin protein ligase C terminal domain PF03099 Biotin/lipoate A/B protein ligase family PF08279 HTH domain PF02548 Ketopantoate hydroxymethyltransferase PF00327 Ribosomal protein L30p/L7e PF02569 Pantoate-beta-alanine ligase PF02261 Aspartate decarboxylase PF13307 Helicase C-terminal domain PF04851 Type III restriction enzyme, res subunit PF00929 Exonuclease PF13307 Helicase C-terminal domain PF04851 Type III restriction enzyme, res subunit PF00929 Exonuclease PF01979 Amidohydrolase family PF14084 Protein of unknown function (DUF4264) PF00155 Aminotransferase class I and II PF00152 tRNA synthetases class II (D, K and N) PF01336 OB-fold nucleic acid binding domain PF07261 Replication initiation and membrane attachment PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PF10576 Iron-sulfur binding domain of endonuclease III PF00633 Helix-hairpin-helix motif PF00730 HhH-GPD superfamily base excision DNA repair protein PF00350 Dynamin family PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF03838 Recombination protein U PF10720 Protein of unknown function (DUF2515) PF10720 Protein of unknown function (DUF2515) PF13411 MerR HTH family regulatory protein PF00344 SecY translocase PF00581 Rhodanese-like domain PF03458 UPF0126 domain PF00291 Pyridoxal-phosphate dependent enzyme PF00585 C-terminal regulatory domain of Threonine dehydratase PF01584 CheW-like domain PF00072 Response regulator receiver domain PF01584 CheW-like domain PF00072 Response regulator receiver domain PF12706 Beta-lactamase superfamily domain PF06491 Disulphide isomerase PF05191 Adenylate kinase, active site lid PF08712 Scaffold protein Nfu/NifU N terminal PF13769 Virulence factor PF03703 Bacterial PH domain PF03703 Bacterial PH domain PF00753 Metallo-beta-lactamase superfamily PF00557 Metallopeptidase family M24 PF00310 Glutamine amidotransferases class-II PF04898 Glutamate synthase central domain PF01645 Conserved region in glutamate synthase PF01493 GXGXG motif PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster PF07992 Pyridine nucleotide-disulphide oxidoreductase PF14005 YpjP-like protein PF17853 GGDEF-like domain PF13556 PucR C-terminal helix-turn-helix domain PF07905 Purine catabolism regulatory protein-like family PF17853 GGDEF-like domain PF13556 PucR C-terminal helix-turn-helix domain PF07905 Purine catabolism regulatory protein-like family PF17853 GGDEF-like domain PF13556 PucR C-terminal helix-turn-helix domain PF07905 Purine catabolism regulatory protein-like family PF01053 Cys/Met metabolism PLP-dependent enzyme PF01053 Cys/Met metabolism PLP-dependent enzyme PF00171 Aldehyde dehydrogenase family PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF00892 EamA-like transporter family PF00701 Dihydrodipicolinate synthetase family PF09388 Spo0E like sporulation regulatory protein PF01176 Translation initiation factor 1A / IF-1 PF06968 Biotin and Thiamin Synthesis associated domain PF04055 Radical SAM superfamily PF03806 AbgT putative transporter family PF03806 AbgT putative transporter family PF00005 ABC transporter PF00005 ABC transporter PF00005 ABC transporter PF00067 Cytochrome P450 PF00444 Ribosomal protein L36 PF00291 Pyridoxal-phosphate dependent enzyme PF02558 Ketopantoate reductase PanE/ApbA PF08546 Ketopantoate reductase PanE/ApbA C terminal PF00270 DEAD/DEAH box helicase PF09369 Domain of unknown function (DUF1998) PF00271 Helicase conserved C-terminal domain PF13482 RNase_H superfamily PF00416 Ribosomal protein S13/S18 PF06908 YspA SLOG family PF05103 DivIVA protein PF13456 Reverse transcriptase-like PF02926 THUMP domain PF01170 Putative RNA methylase family UPF0020 PF01235 Sodium:alanine symporter family PF01235 Sodium:alanine symporter family PF00781 Diacylglycerol kinase catalytic domain PF03009 Glycerophosphoryl diester phosphodiesterase family PF00411 Ribosomal protein S11 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF13037 Domain of unknown function (DUF3898) PF13039 Protein of unknown function (DUF3900) PF01588 Putative tRNA binding domain PF07883 Cupin domain PF12833 Helix-turn-helix domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01000 RNA polymerase Rpb3/RpoA insert domain PF03118 Bacterial RNA polymerase, alpha chain C terminal domain PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain PF01139 tRNA-splicing ligase RtcB PF13307 Helicase C-terminal domain PF02554 Carbon starvation protein CstA PF13722 5TM C-terminal transporter carbon starvation CstA PF02374 Anion-transporting ATPase PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF01196 Ribosomal protein L17 PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF02608 ABC transporter substrate-binding protein PnrA-like PF02608 ABC transporter substrate-binding protein PnrA-like PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00989 PAS fold PF00188 Cysteine-rich secretory protein family PF00188 Cysteine-rich secretory protein family PF08271 TFIIB zinc-binding PF00005 ABC transporter PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF02557 D-alanyl-D-alanine carboxypeptidase PF01966 HD domain PF02682 Carboxyltransferase domain, subdomain C and D PF00005 ABC transporter PF02626 Carboxyltransferase domain, subdomain A and B PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF01566 Natural resistance-associated macrophage protein PF03746 LamB/YcsF family PF00676 Dehydrogenase E1 component PF00676 Dehydrogenase E1 component PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF01590 GAF domain PF02954 Bacterial regulatory protein, Fis family PF00158 Sigma-54 interaction domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02361 Cobalt transport protein PF01596 O-methyltransferase PF08240 Alcohol dehydrogenase GroES-like domain PF13823 Alcohol dehydrogenase GroES-associated PF00107 Zinc-binding dehydrogenase PF02652 L-lactate permease PF02652 L-lactate permease PF02754 Cysteine-rich domain PF11870 Domain of unknown function (DUF3390) PF13183 4Fe-4S dicluster domain PF02589 LUD domain PF02589 LUD domain PF07729 FCD domain PF00392 Bacterial regulatory proteins, gntR family PF00753 Metallo-beta-lactamase superfamily PF01416 tRNA pseudouridine synthase PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF00109 Beta-ketoacyl synthase, N-terminal domain PF02801 Beta-ketoacyl synthase, C-terminal domain PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF00572 Ribosomal protein L13 PF01593 Flavin containing amine oxidoreductase PF00378 Enoyl-CoA hydratase/isomerase PF00378 Enoyl-CoA hydratase/isomerase PF07977 FabA-like domain PF01494 FAD binding domain PF00356 Bacterial regulatory proteins, lacI family PF13407 Periplasmic binding protein domain PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF00294 pfkB family carbohydrate kinase PF00380 Ribosomal protein S9/S16 PF08244 Glycosyl hydrolases family 32 C terminal PF00251 Glycosyl hydrolases family 32 N-terminal domain PF06964 Alpha-L-arabinofuranosidase C-terminal domain PF13685 Iron-containing alcohol dehydrogenase PF01547 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain PF04616 Glycosyl hydrolases family 43 PF00497 Bacterial extracellular solute-binding proteins, family 3 PF00596 Class II Aldolase and Adducin N-terminal domain PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF11762 L-arabinose isomerase C-terminal domain PF02610 L-arabinose isomerase PF06964 Alpha-L-arabinofuranosidase C-terminal domain PF00392 Bacterial regulatory proteins, gntR family PF00528 Binding-protein-dependent transport system inner membrane component PF16369 C-terminal lipocalin-like domain PF04616 Glycosyl hydrolases family 43 PF02954 Bacterial regulatory protein, Fis family PF13426 PAS domain PF00158 Sigma-54 interaction domain PF02954 Bacterial regulatory protein, Fis family PF13426 PAS domain PF00158 Sigma-54 interaction domain PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin PF04607 Region found in RelA / SpoT proteins PF00440 Bacterial regulatory proteins, tetR family PF00005 ABC transporter PF04229 GrpB protein PF05163 DinB family PF05163 DinB family PF00293 NUDIX domain PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF07685 CobB/CobQ-like glutamine amidotransferase domain PF00005 ABC transporter PF12848 ABC transporter PF07454 Stage II sporulation protein P (SpoIIP) PF13802 Galactose mutarotase-like PF01055 Glycosyl hydrolases family 31 PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF14310 Fibronectin type III-like domain PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF07691 PA14 domain PF04397 LytTr DNA-binding domain PF00072 Response regulator receiver domain PF00528 Binding-protein-dependent transport system inner membrane component PF01522 Polysaccharide deacetylase PF00232 Glycosyl hydrolase family 1 PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00356 Bacterial regulatory proteins, lacI family PF00082 Subtilase family PF00892 EamA-like transporter family PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF13667 ThiC-associated domain PF01964 Radical SAM ThiC family PF03323 Bacillus/Clostridium GerA spore germination protein PF05504 Spore germination B3/ GerAC like, C-terminal PF03845 Spore germination protein PF03737 Aldolase/RraA PF01619 Proline dehydrogenase PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF02600 Disulfide bond formation protein DsbB PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF00571 CBS domain PF01769 Divalent cation transporter PF03448 MgtE intracellular N domain PF02567 Phenazine biosynthesis-like protein PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00781 Diacylglycerol kinase catalytic domain PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF00005 ABC transporter PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF07690 Major Facilitator Superfamily PF02525 Flavodoxin-like fold PF00583 Acetyltransferase (GNAT) family PF13478 XdhC Rossmann domain PF02625 XdhC and CoxI family PF13478 XdhC Rossmann domain PF02625 XdhC and CoxI family PF14045 YIEGIA protein PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF00111 2Fe-2S iron-sulfur cluster binding domain PF01799 [2Fe-2S] binding domain PF00199 Catalase PF06628 Catalase-related immune-responsive PF18011 C-terminal domain found in long catalases PF09021 HutP PF00221 Aromatic amino acid lyase PF01175 Urocanase Rossmann-like domain PF17392 Urocanase C-terminal domain PF17391 Urocanase N-terminal domain PF07969 Amidohydrolase family PF00491 Arginase family PF13726 Na+-H+ antiporter family PF03553 Na+/H+ antiporter family PF18801 response regulator aspartate phosphatase H, N terminal PF18801 response regulator aspartate phosphatase H, N terminal PF00232 Glycosyl hydrolase family 1 PF03323 Bacillus/Clostridium GerA spore germination protein PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF00378 Enoyl-CoA hydratase/isomerase PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF02056 Family 4 glycosyl hydrolase PF11975 Family 4 glycosyl hydrolase C-terminal domain PF02056 Family 4 glycosyl hydrolase PF11975 Family 4 glycosyl hydrolase C-terminal domain PF01494 FAD binding domain PF01557 Fumarylacetoacetate (FAA) hydrolase family PF07883 Cupin domain PF07883 Cupin domain PF01557 Fumarylacetoacetate (FAA) hydrolase family PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF04397 LytTr DNA-binding domain PF00072 Response regulator receiver domain PF14175 YaaC-like Protein PF01979 Amidohydrolase family PF00356 Bacterial regulatory proteins, lacI family PF13416 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF02449 Beta-galactosidase PF08533 Beta-galactosidase C-terminal domain PF08532 Beta-galactosidase trimerisation domain PF07745 Glycosyl hydrolase family 53 PF00005 ABC transporter PF16326 ABC transporter C-terminal domain PF12848 ABC transporter PF00005 ABC transporter PF16326 ABC transporter C-terminal domain PF12848 ABC transporter PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00860 Permease family PF08818 Domain of unknown function (DU1801) PF01523 Putative modulator of DNA gyrase PF01523 Putative modulator of DNA gyrase PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF07690 Major Facilitator Superfamily PF07690 Major Facilitator Superfamily PF03358 NADPH-dependent FMN reductase PF01209 ubiE/COQ5 methyltransferase family PF08141 Small acid-soluble spore protein H family PF07470 Glycosyl Hydrolase Family 88 PF01055 Glycosyl hydrolases family 31 PF09335 SNARE associated Golgi protein PF03848 Tellurite resistance protein TehB PF04463 Protein of unknown function (DUF523) PF01047 MarR family PF01047 MarR family PF07690 Major Facilitator Superfamily PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00510 Cytochrome c oxidase subunit III PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF03611 PTS system sugar-specific permease component PF17368 Spore morphogenesis and germination YwcE PF10100 Staphylopine dehydrogenase PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00005 ABC transporter PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF00005 ABC transporter PF07690 Major Facilitator Superfamily PF17936 Bacterial Ig domain PF00082 Subtilase family PF08818 Domain of unknown function (DU1801) PF12706 Beta-lactamase superfamily domain PF07995 Glucose / Sorbosone dehydrogenase PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00872 Transposase, Mutator family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF08000 Bacterial PH domain PF11724 YvbH-like oligomerisation region PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01270 Glycosyl hydrolases family 8 PF07848 PaaX-like protein PF08223 PaaX-like protein C-terminal domain PF04854 Protein of unknown function, DUF624 PF03512 Glycosyl hydrolase family 52 PF07690 Major Facilitator Superfamily PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00571 CBS domain PF00478 IMP dehydrogenase / GMP reductase domain PF00501 AMP-binding enzyme PF14535 AMP-binding enzyme C-terminal domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF00331 Glycosyl hydrolase family 10 PF13302 Acetyltransferase (GNAT) domain PF13302 Acetyltransferase (GNAT) domain PF01925 Sulfite exporter TauE/SafE PF01381 Helix-turn-helix PF08671 Anti-repressor SinI PF05138 Phenylacetic acid catabolic protein PF12389 Camelysin metallo-endopeptidase PF01274 Malate synthase PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF02913 FAD linked oxidases, C-terminal domain PF01565 FAD binding domain PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF09339 IclR helix-turn-helix domain PF01614 Bacterial transcriptional regulator PF04307 LexA-binding, inner membrane-associated putative hydrolase PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF13380 CoA binding domain PF17932 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF02074 Carboxypeptidase Taq (M32) metallopeptidase PF01521 Iron-sulphur cluster biosynthesis PF01521 Iron-sulphur cluster biosynthesis PF13419 Haloacid dehalogenase-like hydrolase PF01063 Amino-transferase class IV PF00583 Acetyltransferase (GNAT) family PF01883 Iron-sulfur cluster assembly protein PF00248 Aldo/keto reductase family PF00248 Aldo/keto reductase family PF02602 Uroporphyrinogen-III synthase HemD PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF04962 KduI/IolB family PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF01810 LysE type translocator PF00324 Amino acid permease PF01883 Iron-sulfur cluster assembly protein PF01738 Dienelactone hydrolase family PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF00892 EamA-like transporter family PF00378 Enoyl-CoA hydratase/isomerase PF08028 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF17871 AAA lid domain PF10431 C-terminal, D2-small domain, of ClpB protein PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00082 Subtilase family PF00378 Enoyl-CoA hydratase/isomerase PF13180 PDZ domain PF07552 Spore Coat Protein X and V domain PF00753 Metallo-beta-lactamase superfamily PF00155 Aminotransferase class I and II PF00171 Aldehyde dehydrogenase family PF00579 tRNA synthetases class I (W and Y) PF09335 SNARE associated Golgi protein PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF00676 Dehydrogenase E1 component PF16870 2-oxoglutarate dehydrogenase C-terminal PF02779 Transketolase, pyrimidine binding domain PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF02735 Ku70/Ku80 beta-barrel domain PF01068 ATP dependent DNA ligase domain PF00106 short chain dehydrogenase PF02547 Queuosine biosynthesis protein PF13185 GAF domain PF07730 Histidine kinase PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF07943 Penicillin-binding protein 5, C-terminal domain PF00768 D-alanyl-D-alanine carboxypeptidase PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00356 Bacterial regulatory proteins, lacI family PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF00474 Sodium:solute symporter family PF16874 Glycosyl hydrolase family 36 C-terminal domain PF16875 Glycosyl hydrolase family 36 N-terminal domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF01547 Bacterial extracellular solute-binding protein PF00356 Bacterial regulatory proteins, lacI family PF02056 Family 4 glycosyl hydrolase PF11975 Family 4 glycosyl hydrolase C-terminal domain PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF00535 Glycosyl transferase family 2 PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00990 Diguanylate cyclase, GGDEF domain PF00072 Response regulator receiver domain PF00881 Nitroreductase family PF00171 Aldehyde dehydrogenase family PF01451 Low molecular weight phosphotyrosine protein phosphatase PF05139 Erythromycin esterase PF14489 QueF-like protein PF04055 Radical SAM superfamily PF01242 6-pyruvoyl tetrahydropterin synthase PF06508 Queuosine biosynthesis protein QueC PF02073 Thermophilic metalloprotease (M29) PF07859 alpha/beta hydrolase fold PF01625 Peptide methionine sulfoxide reductase PF07670 Nucleoside recognition PF07670 Nucleoside recognition PF10842 Protein of unknown function (DUF2642) PF12544 Lysine-2,3-aminomutase PF01144 Coenzyme A transferase PF01144 Coenzyme A transferase PF00202 Aminotransferase class-III PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00144 Beta-lactamase PF11954 Domain of unknown function (DUF3471) PF03060 Nitronate monooxygenase PF03060 Nitronate monooxygenase PF00005 ABC transporter PF00011 Hsp20/alpha crystallin family PF00563 EAL domain PF10388 EAL-domain associated signalling protein domain PF00132 Bacterial transferase hexapeptide (six repeats) PF01613 Flavin reductase like domain PF00561 alpha/beta hydrolase fold PF08386 TAP-like protein PF04204 Homoserine O-succinyltransferase PF02811 PHP domain PF02811 PHP domain PF02540 NAD synthase PF01037 Lrp/AsnC ligand binding domain PF13404 AsnC-type helix-turn-helix domain PF01037 Lrp/AsnC ligand binding domain PF13404 AsnC-type helix-turn-helix domain PF01037 Lrp/AsnC ligand binding domain PF13404 AsnC-type helix-turn-helix domain PF03061 Thioesterase superfamily PF00004 ATPase family associated with various cellular activities (AAA) PF17866 AAA lid domain PF00004 ATPase family associated with various cellular activities (AAA) PF17866 AAA lid domain PF00704 Glycosyl hydrolases family 18 PF01476 LysM domain PF09335 SNARE associated Golgi protein PF08177 Small acid-soluble spore protein N family PF00676 Dehydrogenase E1 component PF00330 Aconitase family (aconitate hydratase) PF00694 Aconitase C-terminal domain PF08179 Small acid-soluble spore protein P family PF03061 Thioesterase superfamily PF03061 Thioesterase superfamily PF00483 Nucleotidyl transferase PF01370 NAD dependent epimerase/dehydratase family PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01636 Phosphotransferase enzyme family PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF03606 C4-dicarboxylate anaerobic carrier PF01979 Amidohydrolase family PF01261 Xylose isomerase-like TIM barrel PF00171 Aldehyde dehydrogenase family PF00356 Bacterial regulatory proteins, lacI family PF01116 Fructose-bisphosphate aldolase class-II PF01261 Xylose isomerase-like TIM barrel PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF01261 Xylose isomerase-like TIM barrel PF01680 SOR/SNZ family PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF00294 pfkB family carbohydrate kinase PF04962 KduI/IolB family PF02653 Branched-chain amino acid transport system / permease component PF02653 Branched-chain amino acid transport system / permease component PF00005 ABC transporter PF13407 Periplasmic binding protein domain PF13407 Periplasmic binding protein domain PF00248 Aldo/keto reductase family PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF01209 ubiE/COQ5 methyltransferase family PF11084 Protein of unknown function (DUF2621) PF07301 Protein of unknown function (DUF1453) PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF13276 HTH-like domain PF00665 Integrase core domain PF13333 Integrase core domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF13495 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF03672 Uncharacterised protein family (UPF0154) PF10747 Sporulation inhibitor of replication protein SirA PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00456 Transketolase, thiamine diphosphate binding domain PF05979 Bacterial protein of unknown function (DUF896) PF00239 Resolvase, N terminal domain PF01726 LexA DNA binding domain PF00717 Peptidase S24-like PF11553 Protein of unknown function (DUF3231) PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF06838 Methionine gamma-lyase PF16360 GTP-binding GTPase Middle Region PF13167 GTP-binding GTPase N-terminal PF01926 50S ribosome-binding GTPase PF17209 Hfq protein PF04445 Putative SAM-dependent methyltransferase PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF01119 DNA mismatch repair protein, C-terminal domain PF08676 MutL C terminal dimerisation domain PF01624 MutS domain I PF05188 MutS domain II PF05192 MutS domain III PF05190 MutS family domain IV PF00488 MutS domain V PF10628 Outer spore coat protein E (CotE) PF06133 Control of competence regulator ComK, YlbF/YmcA PF04055 Radical SAM superfamily PF01938 TRAM domain PF00919 Uncharacterized protein family UPF0004 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF04232 Stage V sporulation protein S (SpoVS) PF13277 YmdB-like protein PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF01966 HD domain PF00013 KH domain PF12072 Domain of unknown function (DUF3552) PF02463 RecF/RecN/SMC N terminal domain PF00154 recA bacterial DNA recombination protein PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF02464 Competence-damaged protein PF18146 Damage-inducible protein CinA KH domain PF00994 Probable molybdopterin binding domain PF01066 CDP-alcohol phosphatidyltransferase PF04461 Protein of unknown function (DUF520) PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF13464 Domain of unknown function (DUF4115) PF11868 Protein of unknown function (DUF3388) PF11588 Protein of unknown function (DUF3243) PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF05193 Peptidase M16 inactive domain PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF17854 FtsK alpha domain PF09397 Ftsk gamma domain PF01580 FtsK/SpoIIIE family PF00574 Clp protease PF03611 PTS system sugar-specific permease component PF00753 Metallo-beta-lactamase superfamily PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF17770 Ribonuclease J C-terminal domain PF00701 Dihydrodipicolinate synthetase family PF00696 Amino acid kinase family PF13840 ACT domain PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF02441 Flavoprotein PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF16924 Dipicolinate synthase subunit A N-terminal domain PF05239 PRC-barrel domain PF00675 Insulinase (Peptidase family M16) PF05193 Peptidase M16 inactive domain PF01522 Polysaccharide deacetylase PF00013 KH domain PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF00575 S1 RNA binding domain PF00312 Ribosomal protein S15 PF06574 FAD synthetase PF01687 Riboflavin kinase PF16198 tRNA pseudouridylate synthase B C-terminal domain PF01509 TruB family pseudouridylate synthase (N terminal domain) PF02033 Ribosome-binding factor A PF04456 Protein of unknown function (DUF503) PF00009 Elongation factor Tu GTP binding domain PF11987 Translation-initiation factor 2 PF04760 Translation initiation factor IF-2, N-terminal region PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PF04296 Protein of unknown function (DUF448) PF13184 NusA-like KH domain PF08529 NusA N-terminal domain PF00575 S1 RNA binding domain PF02576 RimP N-terminal domain PF17384 RimP C-terminal SH3 domain PF01174 SNO glutamine amidotransferase family PF14480 DNA polymerase III polC-type N-terminus I PF11490 DNA polymerase III polC-type N-terminus II PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF00929 Exonuclease PF03129 Anticodon binding domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF04073 Aminoacyl-tRNA editing domain PF17820 PDZ domain PF02163 Peptidase family M50 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase PF13288 DXP reductoisomerase C-terminal domain PF01255 Putative undecaprenyl diphosphate synthase PF01765 Ribosome recycling factor PF00696 Amino acid kinase family PF00889 Elongation factor TS PF00318 Ribosomal protein S2 PF02633 Creatinine amidohydrolase PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF03975 CheD chemotactic sensory transduction PF04509 CheC-like family PF01339 CheB methylesterase PF00072 Response regulator receiver domain PF10609 NUBPL iron-transfer P-loop NTPase PF00448 SRP54-type protein, GTPase domain PF13580 SIS domain PF00771 FHIPEP family PF01312 FlhB HrpN YscU SpaS Family PF01311 Bacterial export proteins, family 1 PF01313 Bacterial export proteins, family 3 PF00813 FliP family PF04347 Flagellar biosynthesis protein, FliO PF00072 Response regulator receiver domain PF00072 Response regulator receiver domain PF04509 CheC-like family PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PF02154 Flagellar motor switch protein FliM PF01052 Type III flagellar switch regulator (C-ring) FliN C-term PF06289 Flagellar and Swarming motility proteins PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF03963 Flagellar hook capping protein - N-terminal region PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF18269 T3SS EscN ATPase C-terminal domain PF02108 Flagellar assembly protein FliH PF01706 FliG C-terminal domain PF14841 FliG middle domain PF14842 FliG N-terminal domain PF01514 Secretory protein of YscJ/FliF family PF08345 Flagellar M-ring protein C-terminal PF02049 Flagellar hook-basal body complex protein FliE PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00460 Flagella basal body rod protein PF06018 CodY GAF-like domain PF08222 CodY helix-turn-helix domain PF00004 ATPase family associated with various cellular activities (AAA) PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF00227 Proteasome subunit PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF01134 Glucose inhibited division protein A PF01131 DNA topoisomerase PF01751 Toprim domain PF01396 Topoisomerase DNA binding C4 zinc finger PF14256 YwiC-like protein PF02481 DNA recombination-mediator protein A PF02629 CoA binding domain PF00549 CoA-ligase PF08442 ATP-grasp domain PF00549 CoA-ligase PF01351 Ribonuclease HII PF01926 50S ribosome-binding GTPase PF00027 Cyclic nucleotide-binding domain PF00325 Bacterial regulatory proteins, crp family PF01245 Ribosomal protein L19 PF01746 tRNA (Guanine-1)-methyltransferase PF05239 PRC-barrel domain PF01782 RimM N-terminal domain PF00886 Ribosomal protein S16 PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF02978 Signal peptide binding domain PF04297 Putative helix-turn-helix protein, YlxM / p13 like PF00448 SRP54-type protein, GTPase domain PF02881 SRP54-type protein, helical bundle domain PF06470 SMC proteins Flexible Hinge Domain PF02463 RecF/RecN/SMC N terminal domain PF07690 Major Facilitator Superfamily PF06569 Protein of unknown function (DUF1128) PF00035 Double-stranded RNA binding motif PF14622 Ribonuclease-III-like PF00550 Phosphopantetheine attachment site PF00698 Acyl transferase domain PF02504 Fatty acid synthesis protein PF03061 Thioesterase superfamily PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF17191 RecG wedge domain PF03313 Serine dehydratase alpha chain PF01842 ACT domain PF03315 Serine dehydratase beta chain PF13684 Dihydroxyacetone kinase family PF02734 DAK2 domain PF03780 Asp23 family, cell envelope-related function PF00830 Ribosomal L28 family PF08183 Stage V sporulation protein family PF00834 Ribulose-phosphate 3 epimerase family PF03193 RsgA GTPase PF16745 RsgA N-terminal domain PF03793 PASTA domain PF00069 Protein kinase domain PF04055 Radical SAM superfamily PF01189 16S rRNA methyltransferase RsmB/F PF01029 NusB family PF02911 Formyl transferase, C-terminal domain PF00551 Formyl transferase PF00271 Helicase conserved C-terminal domain PF17764 3′ DNA-binding domain (3′BD) PF18074 Primosomal protein N C-terminal domain PF18319 PriA DNA helicase Cys-rich region (CRR) domain PF04851 Type III restriction enzyme, res subunit PF04127 DNA / pantothenate metabolism flavoprotein PF02441 Flavoprotein PF01192 RNA polymerase Rpb6 PF00625 Guanylate kinase PF04025 Domain of unknown function (DUF370) PF08340 Domain of unknown function (DUF1732) PF03755 YicC-like family, N-terminal region PF00689 Cation transporting ATPase, C-terminus PF00690 Cation transporter/ATPase, N-terminus PF05670 NFACT protein RNA binding domain PF02403 Seryl-tRNA synthetase N-terminal domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF13936 Helix-turn-helix domain PF00665 Integrase core domain PF06463 Molybdenum Cofactor Synthesis C PF04055 Radical SAM superfamily PF02634 FdhD/NarQ family PF03422 Carbohydrate binding module (family 6) PF00457 Glycosyl hydrolases family 11 PF07690 Major Facilitator Superfamily PF10057 Uncharacterized conserved protein (DUF2294) PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF01209 ubiE/COQ5 methyltransferase family PF00156 Phosphoribosyl transferase domain PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family PF01180 Dihydroorotate dehydrogenase PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B PF00175 Oxidoreductase NAD-binding domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02142 MGS-like domain PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF01979 Amidohydrolase family PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF00860 Permease family PF00156 Phosphoribosyl transferase domain PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF01252 Signal peptidase (SPase) II PF01258 Prokaryotic dksA/traR C4-type zinc finger PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF06827 Zinc finger found in FPG and IleRS PF05103 DivIVA protein PF01479 S4 domain PF17774 Putative RNA-binding domain in YlmH PF02325 YGGT family PF04472 Cell division protein SepF PF01168 Alanine racemase, N-terminal domain PF02578 Multi-copper polyphenol oxidoreductase laccase PF05239 PRC-barrel domain PF03741 Integral membrane protein TerC family PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF04542 Sigma-70 region 2 PF04545 Sigma-70, region 4 PF03419 Sporulation factor SpoIIGA PF01520 N-acetylmuramoyl-L-alanine amidase PF12327 FtsZ family, C-terminal domain PF00091 Tubulin/FtsZ family, GTPase domain PF02491 SHS2 domain inserted in FTSA PF02491 SHS2 domain inserted in FTSA PF06947 Protein of unknown function (DUF1290) PF05949 Bacterial protein of unknown function (DUF881) PF05949 Bacterial protein of unknown function (DUF881) PF08478 POTRA domain, FtsQ-type PF01565 FAD binding domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF04101 Glycosyltransferase family 28 C-terminal domain PF03033 Glycosyltransferase family 28 N-terminal domain PF01098 Cell cycle protein PF01098 Cell cycle protein PF01098 Cell cycle protein PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF10609 NUBPL iron-transfer P-loop NTPase PF00953 Glycosyl transferase family 4 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PF00953 Glycosyl transferase family 4 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF03793 PASTA domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF03793 PASTA domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF04977 Septum formation initiator PF01795 MraW methylase family PF02381 MraZ protein, putative antitoxin-like PF10079 Bacillithiol biosynthesis BshC PF17898 Spore germination GerD central core domain PF02558 Ketopantoate reductase PanE/ApbA PF08546 Ketopantoate reductase PanE/ApbA C terminal PF00583 Acetyltransferase (GNAT) family PF01783 Ribosomal L32p protein family PF02620 Large ribosomal RNA subunit accumulation protein YceD PF05636 HIGH Nucleotidyl Transferase PF05362 Lon protease (S16) C-terminal proteolytic domain PF13180 PDZ domain PF05362 Lon protease (S16) C-terminal proteolytic domain PF13180 PDZ domain PF01734 Patatin-like phospholipase PF14089 KinB-signalling pathway activation in sporulation PF07670 Nucleoside recognition PF01467 Cytidylyltransferase-like PF07690 Major Facilitator Superfamily PF09902 Uncharacterized protein conserved in bacteria (DUF2129) PF06133 Control of competence regulator ComK, YlbF/YmcA PF03851 UV-endonuclease UvdE PF01522 Polysaccharide deacetylase PF14003 YlbE-like protein PF01053 Cys/Met metabolism PLP-dependent enzyme PF00188 Cysteine-rich secretory protein family PF14504 CAP-associated N-terminal PF00571 CBS domain PF08868 YugN-like family PF01594 AI-2E family transporter PF04238 Protein of unknown function (DUF420) PF03626 Prokaryotic Cytochrome C oxidase subunit IV PF00510 Cytochrome c oxidase subunit III PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF00034 Cytochrome c PF01040 UbiA prenyltransferase family PF02628 Cytochrome oxidase assembly protein PF06276 Ferric iron reductase FhuF-like transporter PF04183 IucA / IucC family PF13434 L-lysine 6-monooxygenase (NADPH-requiring) PF06276 Ferric iron reductase FhuF-like transporter PF04183 IucA / IucC family PF00282 Pyridoxal-dependent decarboxylase conserved domain PF00202 Aminotransferase class-III PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF00364 Biotin-requiring enzyme PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF00682 HMGL-like PF02436 Conserved carboxylase domain PF07408 Protein of unknown function (DUF1507) PF04960 Glutaminase PF02562 PhoH-like protein PF13638 PIN domain PF14036 YlaH-like protein PF00679 Elongation factor G C-terminus PF14492 Elongation Factor G, domain II PF00009 Elongation factor Tu GTP binding domain PF03144 Elongation factor Tu domain 2 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF00459 Inositol monophosphatase family PF06335 Protein of unknown function (DUF1054) PF05256 Uncharacterised protein family (UPF0223) PF01276 Orn/Lys/Arg decarboxylase, major domain PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PF06081 Aromatic acid exporter family member 1 PF00392 Bacterial regulatory proteins, gntR family PF00392 Bacterial regulatory proteins, gntR family PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00676 Dehydrogenase E1 component PF01327 Polypeptide deformylase PF07288 Protein of unknown function (DUF1447) PF00753 Metallo-beta-lactamase superfamily PF07521 Zn-dependent metallo-hydrolase RNA specificity domain PF17770 Ribonuclease J C-terminal domain PF02080 TrkA-C domain PF02254 TrkA-N domain PF00578 AhpC/TSA family PF10417 C-terminal domain of 1-Cys peroxiredoxin PF00578 AhpC/TSA family PF00924 Mechanosensitive ion channel PF03698 Uncharacterised protein family (UPF0180) PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal PF00132 Bacterial transferase hexapeptide (six repeats) PF14602 Hexapeptide repeat of succinyl-transferase PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF03480 Bacterial extracellular solute-binding protein, family 7 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF00463 Isocitrate lyase family PF10779 Haemolysin XhlA PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF03070 TENA/THI-4/PQQC family PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF09084 NMT1/THI5 like PF00924 Mechanosensitive ion channel PF00005 ABC transporter PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF02621 Menaquinone biosynthesis PF01048 Phosphorylase superfamily PF07690 Major Facilitator Superfamily PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF02687 FtsX-like permease family PF02687 FtsX-like permease family PF00005 ABC transporter PF12399 Branched-chain amino acid ATP-binding cassette transporter PF00005 ABC transporter PF00005 ABC transporter PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01435 Peptidase family M48 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF00474 Sodium:solute symporter family PF03109 ABC1 family PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF00072 Response regulator receiver domain PF08664 YcbB domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF04960 Glutaminase PF02872 5'-nucleotidase, C-terminal domain PF00149 Calcineurin-like phosphoesterase PF02653 Branched-chain amino acid transport system / permease component PF00561 alpha/beta hydrolase fold PF07883 Cupin domain PF02929 Beta galactosidase small chain PF16353 Domain of unknown function(DUF4981) PF00703 Glycosyl hydrolases family 2 PF02836 Glycosyl hydrolases family 2, TIM barrel domain PF02837 Glycosyl hydrolases family 2, sugar binding domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF13416 Bacterial extracellular solute-binding protein PF05651 Putative sugar diacid recognition PF17853 GGDEF-like domain PF13556 PucR C-terminal helix-turn-helix domain PF00547 Urease, gamma subunit PF00171 Aldehyde dehydrogenase family PF01619 Proline dehydrogenase PF00817 impB/mucB/samB family PF11799 impB/mucB/samB family C-terminal domain PF02694 Uncharacterised BCR, YnfA/UPF0060 family PF03641 Possible lysine decarboxylase PF03641 Possible lysine decarboxylase PF00699 Urease beta subunit PF00892 EamA-like transporter family PF02525 Flavodoxin-like fold PF07690 Major Facilitator Superfamily PF03480 Bacterial extracellular solute-binding protein, family 7 PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00989 PAS fold PF17203 Single cache domain 3 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF01263 Aldose 1-epimerase PF01979 Amidohydrolase family PF00449 Urease alpha-subunit, N-terminal domain PF02782 FGGY family of carbohydrate kinases, C-terminal domain PF00370 FGGY family of carbohydrate kinases, N-terminal domain PF01261 Xylose isomerase-like TIM barrel PF00480 ROK family PF06491 Disulphide isomerase PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment PF01297 Zinc-uptake complex component A periplasmic PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) PF00364 Biotin-requiring enzyme PF02817 e3 binding domain PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00676 Dehydrogenase E1 component PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF05194 UreE urease accessory protein, C-terminal domain PF02814 UreE urease accessory protein, N-terminal domain PF02954 Bacterial regulatory protein, Fis family PF00989 PAS fold PF00158 Sigma-54 interaction domain PF02954 Bacterial regulatory protein, Fis family PF00989 PAS fold PF00158 Sigma-54 interaction domain PF00535 Glycosyl transferase family 2 PF00072 Response regulator receiver domain PF08769 Sporulation initiation factor Spo0A C terminal PF17820 PDZ domain PF05580 SpoIVB peptidase S55 PF01730 UreF PF02463 RecF/RecN/SMC N terminal domain PF01316 Arginine repressor, DNA binding domain PF02863 Arginine repressor, C-terminal domain PF01728 FtsJ-like methyltransferase PF01479 S4 domain PF13292 1-deoxy-D-xylulose-5-phosphate synthase PF02779 Transketolase, pyrimidine binding domain PF02780 Transketolase, C-terminal domain PF00348 Polyprenyl synthetase PF02609 Exonuclease VII small subunit PF02601 Exonuclease VII, large subunit PF13742 OB-fold nucleic acid binding domain PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF01029 NusB family PF02492 CobW/HypB/UreG, nucleotide-binding domain PF03780 Asp23 family, cell envelope-related function PF02785 Biotin carboxylase C-terminal domain PF00289 Biotin carboxylase, N-terminal domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF00364 Biotin-requiring enzyme PF12685 SpoIIIAH-like protein PF09581 Stage III sporulation protein AF (Spore_III_AF) PF09546 Stage III sporulation protein AE (spore_III_AE) PF06686 Stage III sporulation protein AC/AD protein family PF06686 Stage III sporulation protein AC/AD protein family PF01774 UreD urease accessory protein PF09548 Stage III sporulation protein AB (spore_III_AB) PF10942 Protein of unknown function (DUF2619) PF01132 Elongation factor P (EF-P) OB domain PF08207 Elongation factor P (EF-P) KOW-like domain PF09285 Elongation factor P, C-terminal PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF01220 Dehydroquinase class II PF11085 Conserved membrane protein YqhR PF07136 Protein of unknown function (DUF1385) PF01734 Patatin-like phospholipase PF02742 Iron dependent repressor, metal binding and dimerisation domain PF01325 Iron dependent repressor, N-terminal DNA binding domain PF03477 ATP cone domain PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF01063 Amino-transferase class IV PF03099 Biotin/lipoate A/B protein ligase family PF00581 Rhodanese-like domain PF02347 Glycine cleavage system P-protein PF02347 Glycine cleavage system P-protein PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF01571 Aminomethyltransferase folate-binding domain PF08669 Glycine cleavage T-protein C-terminal barrel domain PF11079 Bacterial protein YqhG of unknown function PF00753 Metallo-beta-lactamase superfamily PF11117 Protein of unknown function (DUF2626) PF07963 Prokaryotic N-terminal methylation motif PF01809 Putative membrane protein insertion efficiency factor PF00255 Glutathione peroxidase PF00482 Type II secretion system (T2SS), protein F PF00437 Type II/IV secretion system protein PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF01966 HD domain PF07098 Protein of unknown function (DUF1360) PF00999 Sodium/hydrogen exchanger family PF00582 Universal stress protein family PF00149 Calcineurin-like phosphoesterase PF00849 RNA pseudouridylate synthase PF01513 ATP-NAD kinase PF04607 Region found in RelA / SpoT proteins PF01464 Transglycosylase SLT domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF01152 Bacterial-like globin PF01432 Peptidase family M3 PF08439 Oligopeptidase F PF06054 Competence protein CoiA-like family PF13091 PLD-like domain PF13396 Phospholipase_D-nuclease N-terminal PF05389 Negative regulator of genetic competence (MecA) PF03741 Integral membrane protein TerC family PF03960 ArsC family PF13508 Acetyltransferase (GNAT) domain PF03006 Haemolysin-III related PF01966 HD domain PF01699 Sodium/calcium exchanger protein PF01699 Sodium/calcium exchanger protein PF00579 tRNA synthetases class I (W and Y) PF12227 Protein of unknown function (DUF3603) PF10026 Predicted Zn-dependent protease (DUF2268) PF00485 Phosphoribulokinase / Uridine kinase family PF07486 Cell Wall Hydrolase PF01743 Poly A polymerase head domain PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF08241 Methyltransferase domain PF10815 ComZ PF16363 GDP-mannose 4,6 dehydratase PF14168 YjzC-like protein PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain PF00117 Glutamine amidotransferase class-I PF00202 Aminotransferase class-III PF00696 Amino acid kinase family PF01960 ArgJ family PF01118 Semialdehyde dehydrogenase, NAD binding domain PF02774 Semialdehyde dehydrogenase, dimerisation domain PF00128 Alpha amylase, catalytic domain PF16657 Maltogenic Amylase, C-terminal domain PF02630 SCO1/SenC PF02630 SCO1/SenC PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) PF02463 RecF/RecN/SMC N terminal domain PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF09388 Spo0E like sporulation regulatory protein PF07883 Cupin domain PF01381 Helix-turn-helix PF03591 AzlC protein PF12419 SNF2 Helicase protein PF00271 Helicase conserved C-terminal domain PF00176 SNF2 family N-terminal domain PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 PF00326 Prolyl oligopeptidase family PF00581 Rhodanese-like domain PF01594 AI-2E family transporter PF00356 Bacterial regulatory proteins, lacI family PF13490 Putative zinc-finger PF13416 Bacterial extracellular solute-binding protein PF00128 Alpha amylase, catalytic domain PF02903 Alpha amylase, N-terminal ig-like domain PF16657 Maltogenic Amylase, C-terminal domain PF11700 Vacuole effluxer Atg22 like PF01810 LysE type translocator PF01411 tRNA synthetases class II (A) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF02457 DisA bacterial checkpoint controller nucleotide-binding PF01554 MatE PF16868 NMT1-like family PF16868 NMT1-like family PF00202 Aminotransferase class-III PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF02954 Bacterial regulatory protein, Fis family PF00072 Response regulator receiver domain PF00158 Sigma-54 interaction domain PF00881 Nitroreductase family PF02310 B12 binding domain PF01642 Methylmalonyl-CoA mutase PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain PF01642 Methylmalonyl-CoA mutase PF01039 Carboxyl transferase domain PF08359 YsiA-like protein, C-terminal region PF00440 Bacterial regulatory proteins, tetR family PF08359 YsiA-like protein, C-terminal region PF00440 Bacterial regulatory proteins, tetR family PF10035 Uncharacterized protein conserved in bacteria (DUF2179) PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 PF01380 SIS domain PF01584 CheW-like domain PF01584 CheW-like domain PF02895 Signal transducing histidine kinase, homodimeric domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01627 Hpt domain PF07194 P2 response regulator binding domain PF00563 EAL domain PF00990 Diguanylate cyclase, GGDEF domain PF03707 Bacterial signalling protein N terminal repeat PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12705 PD-(D/E)XK nuclease superfamily PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF12705 PD-(D/E)XK nuclease superfamily PF13673 Acetyltransferase (GNAT) domain PF07457 Protein of unknown function (DUF1516) PF00491 Arginase family PF00491 Arginase family PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF02537 CrcB-like protein, Camphor Resistance (CrcB) PF01895 PhoU domain PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF12849 PBP superfamily domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF01022 Bacterial regulatory protein, arsR family PF01451 Low molecular weight phosphotyrosine protein phosphatase PF02040 Arsenical pump membrane protein PF01022 Bacterial regulatory protein, arsR family PF14602 Hexapeptide repeat of succinyl-transferase PF12464 Maltose acetyltransferase PF12706 Beta-lactamase superfamily domain PF00528 Binding-protein-dependent transport system inner membrane component PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF13378 Enolase C-terminal domain-like PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PF00877 NlpC/P60 family PF18348 Bacterial dipeptidyl-peptidase Sh3 domain PF01979 Amidohydrolase family PF01016 Ribosomal L27 protein PF04327 Cysteine protease Prp PF00829 Ribosomal prokaryotic L21 protein PF10150 Ribonuclease E/G family PF00575 S1 RNA binding domain PF02163 Peptidase family M50 PF01551 Peptidase family M23 PF12804 MobA-like NTP transferase domain PF02391 MoaE protein PF03205 Molybdopterin guanine dinucleotide synthesis protein B PF00994 Probable molybdopterin binding domain PF03454 MoeA C-terminal region (domain IV) PF03453 MoeA N-terminal region (domain I and II) PF00994 Probable molybdopterin binding domain PF01967 MoaC family PF01965 DJ-1/PfpI family PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF03775 Septum formation inhibitor MinC, C-terminal domain PF04093 rod shape-determining protein MreD PF04085 rod shape-determining protein MreC PF04002 RadC-like JAB domain PF02545 Maf-like protein PF06750 Bacterial Peptidase A24 N-terminal domain PF01478 Type IV leader peptidase family PF00990 Diguanylate cyclase, GGDEF domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF10458 Valyl tRNA synthetase tRNA binding arm PF01476 LysM domain PF01476 LysM domain PF00202 Aminotransferase class-III PF00490 Delta-aminolevulinic acid dehydratase PF02602 Uroporphyrinogen-III synthase HemD PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain PF03900 Porphobilinogen deaminase, C-terminal domain PF01578 Cytochrome C assembly protein PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain PF01488 Shikimate / quinate 5-dehydrogenase PF01926 50S ribosome-binding GTPase PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF02190 ATP-dependent protease La (LON) substrate-binding domain PF00004 ATPase family associated with various cellular activities (AAA) PF05362 Lon protease (S16) C-terminal proteolytic domain PF07724 AAA domain (Cdc48 subfamily) PF10431 C-terminal, D2-small domain, of ClpB protein PF06689 ClpX C4-type zinc finger PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase PF05698 Bacterial trigger factor protein (TF) C-terminus PF05697 Bacterial trigger factor protein (TF) PF00694 Aconitase C-terminal domain PF12867 DinB superfamily PF00330 Aconitase family (aconitate hydratase) PF00180 Isocitrate/isopropylmalate dehydrogenase PF00682 HMGL-like PF08502 LeuA allosteric (dimerisation) domain PF01450 Acetohydroxy acid isomeroreductase, catalytic domain PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain PF01842 ACT domain PF10369 Small subunit of acetolactate synthase PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF00920 Dehydratase family PF12850 Calcineurin-like phosphoesterase superfamily domain PF01725 Ham1 family PF01138 3' exoribonuclease family, domain 1 PF03725 3' exoribonuclease family, domain 2 PF10646 Sporulation and spore germination PF01177 Asp/Glu/Hydantoin racemase PF05524 PEP-utilising enzyme, N-terminal PF00391 PEP-utilising enzyme, mobile domain PF02896 PEP-utilising enzyme, TIM barrel domain PF00381 PTS HPr component phosphorylation site PF00196 Bacterial regulatory proteins, luxR family PF00583 Acetyltransferase (GNAT) family PF01047 MarR family PF01042 Endoribonuclease L-PSP PF05675 Protein of unknown function (DUF817) PF00293 NUDIX domain PF13085 2Fe-2S iron-sulfur cluster binding domain PF13183 4Fe-4S dicluster domain PF00890 FAD binding domain PF02910 Fumarate reductase flavoprotein C-term PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PF00005 ABC transporter PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF02386 Cation transport protein PF10702 Protein of unknown function (DUF2507) PF00696 Amino acid kinase family PF13840 ACT domain PF01541 GIY-YIG catalytic domain PF02151 UvrB/uvrC motif PF08459 UvrC Helix-hairpin-helix N-terminal PF00085 Thioredoxin PF01012 Electron transfer flavoprotein domain PF00766 Electron transfer flavoprotein FAD-binding domain PF01012 Electron transfer flavoprotein domain PF00378 Enoyl-CoA hydratase/isomerase PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF03994 Domain of Unknown Function (DUF350) PF00488 MutS domain V PF01713 Smr domain PF14791 DNA polymerase beta thumb PF14716 Helix-hairpin-helix domain PF02811 PHP domain PF02674 Colicin V production protein PF05164 Cell division protein ZapA PF03483 B3/4 domain PF03484 tRNA synthetase B5 domain PF03147 Ferredoxin-fold anticodon binding domain PF01588 Putative tRNA binding domain PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain PF01409 tRNA synthetases class II core domain (F) PF00588 SpoU rRNA Methylase family PF08032 RNA 2'-O ribose methyltransferase substrate binding PF14098 Small, acid-soluble spore protein I PF02567 Phenazine biosynthesis-like protein PF05163 DinB family PF12706 Beta-lactamase superfamily domain PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF12680 SnoaL-like domain PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF12680 SnoaL-like domain PF00574 Clp protease PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF00005 ABC transporter PF00005 ABC transporter PF13533 Biotin-lipoyl like PF02277 Phosphoribosyltransferase PF02082 Transcriptional regulator PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF17850 CysA C-terminal regulatory domain PF12857 TOBE-like domain PF05343 M42 glutamyl aminopeptidase PF06961 Protein of unknown function (DUF1294) PF00453 Ribosomal protein L20 PF01632 Ribosomal protein L35 PF00707 Translation initiation factor IF-3, C-terminal domain PF05198 Translation initiation factor IF-3, N-terminal domain PF03129 Anticodon binding domain PF02824 TGS domain PF00587 tRNA synthetase class II core domain (G, H, P, S and T) PF07973 Threonyl and Alanyl tRNA synthetase second additional domain PF08812 YtxC-like family PF04055 Radical SAM superfamily PF00005 ABC transporter PF00005 ABC transporter PF07319 Primosomal protein DnaI N-terminus PF01695 IstB-like ATP binding protein PF07261 Replication initiation and membrane attachment PF03477 ATP cone domain PF02675 S-adenosylmethionine decarboxylase PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF01121 Dephospho-CoA kinase PF02659 Putative manganese efflux pump PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain PF06827 Zinc finger found in FPG and IleRS PF01367 5'-3' exonuclease, C-terminal SAM fold PF02739 5'-3' exonuclease, N-terminal resolvase-like domain PF00476 DNA polymerase family A PF01145 SPFH domain / Band 7 family PF01145 SPFH domain / Band 7 family PF12221 Bacterial membrane protein N terminal PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF00180 Isocitrate/isopropylmalate dehydrogenase PF00285 Citrate synthase, C-terminal domain PF04284 Protein of unknown function (DUF441) PF04186 FxsA cytoplasmic membrane protein PF00391 PEP-utilising enzyme, mobile domain PF00224 Pyruvate kinase, barrel domain PF02887 Pyruvate kinase, alpha/beta domain PF00365 Phosphofructokinase PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PF01039 Carboxyl transferase domain PF17848 Acetyl-coA carboxylase zinc finger domain PF07729 FCD domain PF00392 Bacterial regulatory proteins, gntR family PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF00390 Malic enzyme, N-terminal domain PF03949 Malic enzyme, NAD binding domain PF07733 Bacterial DNA polymerase III alpha NTPase domain PF17657 Bacterial DNA polymerase III alpha subunit finger domain PF14579 Helix-hairpin-helix motif PF02811 PHP domain PF01336 OB-fold nucleic acid binding domain PF14034 Sporulation protein YtrH PF01368 DHH family PF02272 DHHA1 domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF03061 Thioesterase superfamily PF00571 CBS domain PF07085 DRTGG domain PF00392 Bacterial regulatory proteins, gntR family PF01321 Creatinase/Prolidase N-terminal domain PF00557 Metallopeptidase family M24 PF01262 Alanine dehydrogenase/PNT, C-terminal domain PF05222 Alanine dehydrogenase/PNT, N-terminal domain PF00005 ABC transporter PF13732 Domain of unknown function (DUF4162) PF00582 Universal stress protein family PF14698 Argininosuccinate lyase C-terminal PF00206 Lyase PF00764 Arginosuccinate synthase PF12787 EcsC protein family PF01966 HD domain PF00871 Acetokinase family PF02384 N-6 DNA Methylase PF12679 ABC-2 family transporter protein PF08534 Redoxin PF09579 Sporulation protein YtfJ (Spore_YtfJ) PF06271 RDD family PF01343 Peptidase family S49 PF01513 ATP-NAD kinase PF07969 Amidohydrolase family PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF02568 Thiamine biosynthesis protein (ThiI) PF02926 THUMP domain PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00266 Aminotransferase class-V PF06160 Septation ring formation regulator, EzrA PF02811 PHP domain PF00440 Bacterial regulatory proteins, tetR family PF13185 GAF domain PF00163 Ribosomal protein S4/S9 N-terminal domain PF01479 S4 domain PF07690 Major Facilitator Superfamily PF00005 ABC transporter PF00005 ABC transporter PF00005 ABC transporter PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF02308 MgtC family PF02308 MgtC family PF01479 S4 domain PF00579 tRNA synthetases class I (W and Y) PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF00356 Bacterial regulatory proteins, lacI family PF00722 Glycosyl hydrolases family 16 PF00722 Glycosyl hydrolases family 16 PF00501 AMP-binding enzyme PF13193 AMP-binding enzyme C-terminal domain PF00583 Acetyltransferase (GNAT) family PF00571 CBS domain PF00850 Histone deacetylase domain PF01048 Phosphorylase superfamily PF13677 Membrane MotB of proton-channel complex MotA/MotB PF00691 OmpA family PF01618 MotA/TolQ/ExbB proton channel family PF00356 Bacterial regulatory proteins, lacI family PF01817 Chorismate mutase type II PF00793 DAHP synthetase I family PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF12732 YtxH-like protein PF02073 Thermophilic metalloprotease (M29) PF01225 Mur ligase family, catalytic domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF17854 FtsK alpha domain PF09397 Ftsk gamma domain PF01580 FtsK/SpoIIIE family PF14794 Domain of unknown function (DUF4479) PF01588 Putative tRNA binding domain PF07285 Protein of unknown function (DUF1444) PF00085 Thioredoxin PF03123 CAT RNA binding domain PF00874 PRD domain PF03123 CAT RNA binding domain PF00874 PRD domain PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ PF01931 Protein of unknown function DUF84 PF05343 M42 glutamyl aminopeptidase PF03413 Peptidase propeptide and YPEB domain PF01709 Transcriptional regulator PF00753 Metallo-beta-lactamase superfamily PF02390 Putative methyltransferase PF01636 Phosphotransferase enzyme family PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF17999 Pullulanase N1-terminal domain PF01842 ACT domain PF00551 Formyl transferase PF04172 LrgB-like family PF03788 LrgA family PF02834 LigT like Phosphoesterase PF00291 Pyridoxal-phosphate dependent enzyme PF01546 Peptidase family M20/M25/M40 PF00849 RNA pseudouridylate synthase PF01479 S4 domain PF01943 Polysaccharide biosynthesis protein PF14667 Polysaccharide biosynthesis C-terminal domain PF08264 Anticodon-binding domain of tRNA PF00133 tRNA synthetases class I (I, L, M and V) PF13603 Leucyl-tRNA synthetase, Domain 2 PF09334 tRNA synthetases class I (M) PF07690 Major Facilitator Superfamily PF01212 Beta-eliminating lyase PF04055 Radical SAM superfamily PF16199 Radical_SAM C-terminal domain PF06962 Putative rRNA methylase PF00484 Carbonic anhydrase PF10776 Protein of unknown function (DUF2600) PF12146 Serine aminopeptidase, S33 PF00132 Bacterial transferase hexapeptide (six repeats) PF01497 Periplasmic binding protein PF01032 FecCD transport family PF03992 Antibiotic biosynthesis monooxygenase PF04203 Sortase domain PF00005 ABC transporter PF01032 FecCD transport family PF01497 Periplasmic binding protein PF05031 Iron Transport-associated domain PF05031 Iron Transport-associated domain PF02773 S-adenosylmethionine synthetase, C-terminal domain PF02772 S-adenosylmethionine synthetase, central domain PF00438 S-adenosylmethionine synthetase, N-terminal domain PF01293 Phosphoenolpyruvate carboxykinase PF01638 HxlR-like helix-turn-helix PF07681 DoxX PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF00326 Prolyl oligopeptidase family PF00293 NUDIX domain PF07690 Major Facilitator Superfamily PF00155 Aminotransferase class I and II PF00171 Aldehyde dehydrogenase family PF12823 Domain of unknown function (DUF3817) PF02585 GlcNAc-PI de-N-acetylase PF03358 NADPH-dependent FMN reductase PF06725 3D domain PF03990 G5-linked-Ubiquitin-like domain PF07501 G5 domain PF06725 3D domain PF03990 G5-linked-Ubiquitin-like domain PF07501 G5 domain PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF13580 SIS domain PF05448 Acetyl xylan esterase (AXE1) PF00939 Sodium:sulfate symporter transmembrane region PF00528 Binding-protein-dependent transport system inner membrane component PF07885 Ion channel PF02254 TrkA-N domain PF08868 YugN-like family PF02082 Transcriptional regulator PF00342 Phosphoglucose isomerase PF00465 Iron-containing alcohol dehydrogenase PF04070 Domain of unknown function (DUF378) PF01261 Xylose isomerase-like TIM barrel PF00575 S1 RNA binding domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF02110 Hydroxyethylthiazole kinase family PF00155 Aminotransferase class I and II PF01037 Lrp/AsnC ligand binding domain PF07997 Protein of unknown function (DUF1694) PF02664 S-Ribosylhomocysteinase (LuxS) PF03631 Virulence factor BrkB PF00216 Bacterial DNA-binding protein PF06271 RDD family PF02632 BioY family PF13726 Na+-H+ antiporter family PF03553 Na+/H+ antiporter family PF00483 Nucleotidyl transferase PF16363 GDP-mannose 4,6 dehydratase PF04321 RmlD substrate binding domain PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF16363 GDP-mannose 4,6 dehydratase PF16363 GDP-mannose 4,6 dehydratase PF13579 Glycosyl transferase 4-like domain PF00534 Glycosyl transferases group 1 PF03600 Citrate transporter PF02080 TrkA-C domain PF01747 ATP-sulfurylase PF14306 PUA-like domain PF01131 DNA topoisomerase PF01751 Toprim domain PF13342 C-terminal repeat of topoisomerase PF01396 Topoisomerase DNA binding C4 zinc finger PF05223 NTF2-like N-terminal transpeptidase domain PF03717 Penicillin-binding Protein dimerisation domain PF00905 Penicillin binding protein transpeptidase domain PF03480 Bacterial extracellular solute-binding protein, family 7 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF02733 Dak1 domain PF02733 Dak1 domain PF14278 Transcriptional regulator C-terminal region PF00440 Bacterial regulatory proteins, tetR family PF03610 PTS system fructose IIA component PF02734 DAK2 domain PF01636 Phosphotransferase enzyme family PF00883 Cytosol aminopeptidase family, catalytic domain PF02789 Cytosol aminopeptidase family, N-terminal domain PF02681 Divergent PAP2 family PF01497 Periplasmic binding protein PF06725 3D domain PF17302 Family of unknown function (DUF5351) PF07992 Pyridine nucleotide-disulphide oxidoreductase PF07992 Pyridine nucleotide-disulphide oxidoreductase PF01521 Iron-sulphur cluster biosynthesis PF04055 Radical SAM superfamily PF01678 Diaminopimelate epimerase PF07293 Protein of unknown function (DUF1450) PF07992 Pyridine nucleotide-disulphide oxidoreductase PF07315 Protein of unknown function (DUF1462) PF01106 NifU-like domain PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF00291 Pyridoxal-phosphate dependent enzyme PF01842 ACT domain PF00742 Homoserine dehydrogenase PF03447 Homoserine dehydrogenase, NAD binding domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF13344 Haloacid dehalogenase-like hydrolase PF01934 Protein of unknown function DUF86 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded PF00005 ABC transporter PF06265 Protein of unknown function (DUF1027) PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family PF04055 Radical SAM superfamily PF01551 Peptidase family M23 PF00209 Sodium:neurotransmitter symporter family PF02653 Branched-chain amino acid transport system / permease component PF00005 ABC transporter PF13407 Periplasmic binding protein domain PF00106 short chain dehydrogenase PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF03553 Na+/H+ antiporter family PF00186 Dihydrofolate reductase PF00303 Thymidylate synthase PF08827 Domain of unknown function (DUF1805) PF02872 5'-nucleotidase, C-terminal domain PF01904 Protein of unknown function DUF72 PF01458 Uncharacterized protein family (UPF0051) PF01592 NifU-like N terminal domain PF01592 NifU-like N terminal domain PF00266 Aminotransferase class-V PF01458 Uncharacterized protein family (UPF0051) PF00005 ABC transporter PF02627 Carboxymuconolactone decarboxylase family PF04647 Accessory gene regulator B PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF03180 NLPA lipoprotein PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF09383 NIL domain PF07690 Major Facilitator Superfamily PF00485 Phosphoribulokinase / Uridine kinase family PF10830 Protein of unknown function (DUF2553) PF01597 Glycine cleavage H-protein PF03960 ArsC family PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF00378 Enoyl-CoA hydratase/isomerase PF07875 Coat F domain PF10835 Protein of unknown function (DUF2573) PF00005 ABC transporter PF01810 LysE type translocator PF06445 GyrI-like small molecule binding domain PF13411 MerR HTH family regulatory protein PF01894 Uncharacterised protein family UPF0047 PF01145 SPFH domain / Band 7 family PF15975 Flotillin PF14437 MafB19-like deaminase PF04439 Streptomycin adenylyltransferase PF12833 Helix-turn-helix domain PF00145 C-5 cytosine-specific DNA methylase PF09556 HaeIII restriction endonuclease PF01555 DNA methylase PF18755 Restriction Enzyme Adenine Methylase Associated PF03838 Recombination protein U PF01695 IstB-like ATP binding protein PF03793 PASTA domain PF00069 Protein kinase domain PF03837 RecT family PF09588 YqaJ-like viral recombinase domain PF02899 Phage integrase, N-terminal SAM-like domain PF00589 Phage integrase family PF01668 SmpB protein PF17876 Cold shock domain PF08206 Ribonuclease B OB domain PF00773 RNB domain PF00575 S1 RNA binding domain PF12146 Serine aminopeptidase, S33 PF03840 Preprotein translocase SecG subunit PF00113 Enolase, C-terminal TIM barrel domain PF03952 Enolase, N-terminal domain PF06415 BPG-independent PGAM N-terminus (iPGM_N) PF01676 Metalloenzyme superfamily PF00121 Triosephosphate isomerase PF00162 Phosphoglycerate kinase PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF04198 Putative sugar-binding domain PF00309 Sigma-54 factor, Activator interacting domain (AID) PF04963 Sigma-54 factor, core binding domain PF04552 Sigma-54, DNA binding domain PF00574 Clp protease PF00381 PTS HPr component phosphorylation site PF02650 WhiA C-terminal HTH domain PF14527 WhiA LAGLIDADG-like domain PF10298 WhiA N-terminal LAGLIDADG-like domain PF01933 Uncharacterised protein family UPF0052 PF03668 P-loop ATPase protein family PF00293 NUDIX domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF13580 SIS domain PF01418 Helix-turn-helix domain, rpiR family PF01380 SIS domain PF01502 Phosphoribosyl-AMP cyclohydrolase PF01503 Phosphoribosyl-ATP pyrophosphohydrolase PF00977 Histidine biosynthesis protein PF00977 Histidine biosynthesis protein PF00117 Glutamine amidotransferase class-I PF03787 RAMP superfamily PF00475 Imidazoleglycerol-phosphate dehydratase PF00815 Histidinol dehydrogenase PF01634 ATP phosphoribosyltransferase PF13393 Histidyl-tRNA synthetase PF14602 Hexapeptide repeat of succinyl-transferase PF13419 Haloacid dehalogenase-like hydrolase PF07670 Nucleoside recognition PF01790 Prolipoprotein diacylglyceryl transferase PF07475 HPr Serine kinase C-terminal domain PF02603 HPr Serine kinase N terminus PF04020 Mycobacterial 4 TMS phage holin, superfamily IV PF04024 PspC domain PF13349 Putative adhesin PF17755 UvrA DNA-binding domain PF17760 UvrA interaction domain PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF02151 UvrB/uvrC motif PF12344 Ultra-violet resistance protein B PF17757 UvrB interaction domain PF04203 Sortase domain PF17820 PDZ domain PF17820 PDZ domain PF03572 Peptidase family S41 PF01471 Putative peptidoglycan binding domain PF04225 Opacity-associated protein A LysM-like domain PF01551 Peptidase family M23 PF02687 FtsX-like permease family PF18075 FtsX extracellular domain PF00005 ABC transporter PF00034 Cytochrome c PF10035 Uncharacterized protein conserved in bacteria (DUF2179) PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 PF03462 PCRF domain PF00472 RF-1 domain PF02810 SEC-C motif PF07517 SecA DEAD-like domain PF01043 SecA preprotein cross-linking domain PF07516 SecA Wing and Scaffold domain PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus PF02482 Sigma 54 modulation protein / S30EA ribosomal protein PF00313 'Cold-shock' DNA-binding domain PF02561 Flagellar protein FliS PF07195 Flagellar hook-associated protein 2 C-terminus PF02465 Flagellar hook-associated protein 2 N-terminus PF03646 FlaG protein PF00700 Bacterial flagellin C-terminal helical region PF00669 Bacterial flagellin N-terminal helical region PF02599 Global regulator protein family PF02623 FliW protein PF00700 Bacterial flagellin C-terminal helical region PF00669 Bacterial flagellin N-terminal helical region PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00271 Helicase conserved C-terminal domain PF04851 Type III restriction enzyme, res subunit PF02645 Uncharacterised protein, DegV family COG1307 PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF05384 Sensor protein DegS PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07730 Histidine kinase PF09186 Domain of unknown function (DUF1949) PF01205 Uncharacterized protein family UPF0029 PF01470 Pyroglutamyl peptidase PF06445 GyrI-like small molecule binding domain PF12833 Helix-turn-helix domain PF06445 GyrI-like small molecule binding domain PF12833 Helix-turn-helix domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF00528 Binding-protein-dependent transport system inner membrane component PF03816 Cell envelope-related transcriptional attenuator domain PF03816 Cell envelope-related transcriptional attenuator domain PF08486 Stage II sporulation protein PF02397 Bacterial sugar transferase PF00483 Nucleotidyl transferase PF00483 Nucleotidyl transferase PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02875 Mur ligase family, glutamate ligase domain PF08245 Mur ligase middle domain PF02655 ATP-grasp domain PF18419 ATP-grasp-like domain PF04262 Glutamate-cysteine ligase PF18419 ATP-grasp-like domain PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF04262 Glutamate-cysteine ligase PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF00005 ABC transporter PF01061 ABC-2 type transporter PF13439 Glycosyltransferase Family 4 PF00534 Glycosyl transferases group 1 PF01520 N-acetylmuramoyl-L-alanine amidase PF04122 Putative cell wall binding repeat 2 PF13614 AAA domain PF13807 G-rich domain on putative tyrosine kinase PF02706 Chain length determinant protein PF01476 LysM domain PF00877 NlpC/P60 family PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion PF02687 FtsX-like permease family PF12704 MacB-like periplasmic core domain PF01547 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF17851 Beta xylosidase C-terminal Concanavalin A-like domain PF04616 Glycosyl hydrolases family 43 PF04854 Protein of unknown function, DUF624 PF05163 DinB family PF13416 Bacterial extracellular solute-binding protein PF13416 Bacterial extracellular solute-binding protein PF01867 CRISPR associated protein Cas1 PF00356 Bacterial regulatory proteins, lacI family PF00128 Alpha amylase, catalytic domain PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) PF03714 Bacterial pullanase-associated domain PF03009 Glycerophosphoryl diester phosphodiesterase family PF12169 DNA polymerase III subunits gamma and tau domain III PF09827 CRISPR associated protein Cas2 PF02449 Beta-galactosidase PF08533 Beta-galactosidase C-terminal domain PF08532 Beta-galactosidase trimerisation domain PF04740 LXG domain of WXG superfamily PF18801 response regulator aspartate phosphatase H, N terminal PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PF01370 NAD dependent epimerase/dehydratase family PF13477 Glycosyl transferase 4-like PF00534 Glycosyl transferases group 1 PF00535 Glycosyl transferase family 2 PF00535 Glycosyl transferase family 2 PF02397 Bacterial sugar transferase PF02719 Polysaccharide biosynthesis protein PF04014 Antidote-toxin recognition MazE, bacterial antitoxin PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system PF01081 KDPG and KHG aldolase PF00294 pfkB family carbohydrate kinase PF00356 Bacterial regulatory proteins, lacI family PF00294 pfkB family carbohydrate kinase PF05025 RbsD / FucU transport protein family PF00005 ABC transporter PF13407 Periplasmic binding protein domain PF07977 FabA-like domain PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF00460 Flagella basal body rod protein PF06429 Flagellar basal body rod FlgEFG protein C-terminal PF12116 Stage III sporulation protein D PF00571 CBS domain PF01743 Poly A polymerase head domain PF00474 Sodium:solute symporter family PF01551 Peptidase family M23 PF08486 Stage II sporulation protein PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF06612 Protein of unknown function (DUF1146) PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00231 ATP synthase PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF00306 ATP synthase alpha/beta chain, C terminal domain PF02874 ATP synthase alpha/beta family, beta-barrel domain PF00213 ATP synthase delta (OSCP) subunit PF00430 ATP synthase B/B' CF(0) PF00137 ATP synthase subunit C PF00119 ATP synthase A chain PF00528 Binding-protein-dependent transport system inner membrane component PF03899 ATP synthase I chain PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter PF13860 FlgD Ig-like domain PF05922 Peptidase inhibitor I9 PF02225 PA domain PF00082 Subtilase family PF13860 FlgD Ig-like domain PF05922 Peptidase inhibitor I9 PF02225 PA domain PF00082 Subtilase family PF00464 Serine hydroxymethyltransferase PF04260 Protein of unknown function (DUF436) PF02502 Ribose/Galactose Isomerase PF12729 Four helix bundle sensory module for signal transduction PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01451 Low molecular weight phosphotyrosine protein phosphatase PF02659 Putative manganese efflux pump PF00528 Binding-protein-dependent transport system inner membrane component PF12911 N-terminal TM domain of oligopeptide transport permease C PF03481 Putative GTP-binding controlling metal-binding PF01300 Telomere recombination PF09551 Stage II sporulation protein R (spore_II_R) PF13847 Methyltransferase domain PF17827 PrmC N-terminal domain PF03462 PCRF domain PF00472 RF-1 domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF00857 Isochorismatase family PF00265 Thymidine kinase PF01197 Ribosomal protein L31 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain PF07498 Rho termination factor, N-terminal domain PF07497 Rho termination factor, RNA-binding domain PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) PF00923 Transaldolase/Fructose-6-phosphate aldolase PF01116 Fructose-bisphosphate aldolase class-II PF00072 Response regulator receiver domain PF01032 FecCD transport family PF01032 FecCD transport family PF01497 Periplasmic binding protein PF06418 CTP synthase N-terminus PF00117 Glutamine amidotransferase class-I PF05066 HB1, ASXL, restriction endonuclease HTH domain PF11871 Domain of unknown function (DUF3391) PF01966 HD domain PF02310 B12 binding domain PF01642 Methylmalonyl-CoA mutase PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00441 Acyl-CoA dehydrogenase, C-terminal domain PF02770 Acyl-CoA dehydrogenase, middle domain PF02771 Acyl-CoA dehydrogenase, N-terminal domain PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PF02575 YbaB/EbfC DNA-binding family PF02803 Thiolase, C-terminal domain PF00108 Thiolase, N-terminal domain PF02754 Cysteine-rich domain PF13183 4Fe-4S dicluster domain PF13091 PLD-like domain PF00561 alpha/beta hydrolase fold PF08386 TAP-like protein PF04306 Protein of unknown function (DUF456) PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF00491 Arginase family PF17932 Tetracyclin repressor-like, C-terminal domain PF00440 Bacterial regulatory proteins, tetR family PF17284 Spermidine synthase tetramerisation domain PF00912 Transglycosylase PF00905 Penicillin binding protein transpeptidase domain PF08741 YwhD family PF01361 Tautomerase enzyme PF00873 AcrB/AcrD/AcrF family PF01966 HD domain PF01966 HD domain PF00544 Pectate lyase PF00375 Sodium:dicarboxylate symporter family PF07293 Protein of unknown function (DUF1450) PF03099 Biotin/lipoate A/B protein ligase family PF01515 Phosphate acetyl/butaryl transferase PF06778 Chlorite dismutase PF07486 Cell Wall Hydrolase PF09671 Spore coat protein (Spore_GerQ) PF04241 Protein of unknown function (DUF423) PF00583 Acetyltransferase (GNAT) family PF00929 Exonuclease PF00909 Ammonium Transporter Family PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal PF12431 Transcriptional regulator PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00989 PAS fold PF17203 Single cache domain 3 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain PF13407 Periplasmic binding protein domain PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF00528 Binding-protein-dependent transport system inner membrane component PF00528 Binding-protein-dependent transport system inner membrane component PF03167 Uracil DNA glycosylase superfamily PF01232 Mannitol dehydrogenase Rossmann domain PF08125 Mannitol dehydrogenase C-terminal domain PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF08279 HTH domain PF05043 Mga helix-turn-helix domain PF00874 PRD domain PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF02378 Phosphotransferase system, EIIC PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF00881 Nitroreductase family PF02525 Flavodoxin-like fold PF02667 Short chain fatty acid transporter PF02225 PA domain PF04389 Peptidase family M28 PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF13419 Haloacid dehalogenase-like hydrolase PF00892 EamA-like transporter family PF00120 Glutamine synthetase, catalytic domain PF03951 Glutamine synthetase, beta-Grasp domain PF00128 Alpha amylase, catalytic domain PF16657 Maltogenic Amylase, C-terminal domain PF10057 Uncharacterized conserved protein (DUF2294) PF01266 FAD dependent oxidoreductase PF00355 Rieske [2Fe-2S] domain PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PF00205 Thiamine pyrophosphate enzyme, central domain PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PF01910 Thiamine-binding protein PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF08858 IDEAL domain PF08864 UPF0302 domain PF01037 Lrp/AsnC ligand binding domain PF13404 AsnC-type helix-turn-helix domain PF00194 Eukaryotic-type carbonic anhydrase PF03992 Antibiotic biosynthesis monooxygenase PF01638 HxlR-like helix-turn-helix PF02525 Flavodoxin-like fold PF07690 Major Facilitator Superfamily PF07875 Coat F domain PF08338 Domain of unknown function (DUF1731) PF01370 NAD dependent epimerase/dehydratase family PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00005 ABC transporter PF00005 ABC transporter PF02028 BCCT, betaine/carnitine/choline family transporter PF01144 Coenzyme A transferase PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF04025 Domain of unknown function (DUF370) PF02132 RecR protein PF13662 Toprim domain PF01522 Polysaccharide deacetylase PF02416 mttA/Hcf106 family PF00902 Sec-independent protein translocase protein (TatC) PF00155 Aminotransferase class I and II PF12697 Alpha/beta hydrolase family PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01238 Phosphomannose isomerase type I PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF00232 Glycosyl hydrolase family 1 PF02378 Phosphotransferase system, EIIC PF02255 PTS system, Lactose/Cellobiose specific IIA subunit PF01381 Helix-turn-helix PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF03972 MmgE/PrpD family PF00285 Citrate synthase, C-terminal domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF01235 Sodium:alanine symporter family PF01235 Sodium:alanine symporter family PF00248 Aldo/keto reductase family PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PF02652 L-lactate permease PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain PF00056 lactate/malate dehydrogenase, NAD binding domain PF02696 Uncharacterized ACR, YdiU/UPF0061 family PF00171 Aldehyde dehydrogenase family PF02492 CobW/HypB/UreG, nucleotide-binding domain PF07683 Cobalamin synthesis protein cobW C-terminal domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF00202 Aminotransferase class-III PF02954 Bacterial regulatory protein, Fis family PF13426 PAS domain PF00158 Sigma-54 interaction domain PF03553 Na+/H+ antiporter family PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF01938 TRAM domain PF05958 tRNA (Uracil-5-)-methyltransferase PF16653 Saccharopine dehydrogenase C-terminal domain PF03435 Saccharopine dehydrogenase NADP binding domain PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain PF06039 Malate:quinone oxidoreductase (Mqo) PF00692 dUTPase PF00657 GDSL-like Lipase/Acylhydrolase PF01446 Replication protein PF00665 Integrase core domain PF01695 IstB-like ATP binding protein PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF02322 Cytochrome bd terminal oxidase subunit II PF02322 Cytochrome bd terminal oxidase subunit II PF01654 Cytochrome bd terminal oxidase subunit I PF01654 Cytochrome bd terminal oxidase subunit I PF01061 ABC-2 type transporter PF00005 ABC transporter PF13732 Domain of unknown function (DUF4162) PF18277 AbrB C-terminal domain PF04014 Antidote-toxin recognition MazE, bacterial antitoxin PF18277 AbrB C-terminal domain PF04014 Antidote-toxin recognition MazE, bacterial antitoxin PF01613 Flavin reductase like domain PF01613 Flavin reductase like domain PF01695 IstB-like ATP binding protein PF01695 IstB-like ATP binding protein PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF02086 D12 class N6 adenine-specific DNA methyltransferase PF02086 D12 class N6 adenine-specific DNA methyltransferase PF02590 Predicted SPOUT methyltransferase PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF18801 response regulator aspartate phosphatase H, N terminal PF18801 response regulator aspartate phosphatase H, N terminal PF03413 Peptidase propeptide and YPEB domain PF03413 Peptidase propeptide and YPEB domain PF13180 PDZ domain PF00753 Metallo-beta-lactamase superfamily PF09648 YycH protein PF07435 YycH protein PF00672 HAMP domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF13426 PAS domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00709 Adenylosuccinate synthetase PF00772 DnaB-like helicase N terminal domain PF03796 DnaB-like helicase C terminal domain PF03948 Ribosomal protein L9, C-terminal domain PF01281 Ribosomal protein L9, N-terminal domain PF01368 DHH family PF02272 DHHA1 domain PF09991 Predicted membrane protein (DUF2232) PF00488 MutS domain V PF01713 Smr domain PF00403 Heavy-metal-associated domain PF01022 Bacterial regulatory protein, arsR family PF03471 Transporter associated domain PF00999 Sodium/hydrogen exchanger family PF02080 TrkA-C domain PF00589 Phage integrase family PF02525 Flavodoxin-like fold PF06445 GyrI-like small molecule binding domain PF13411 MerR HTH family regulatory protein PF06445 GyrI-like small molecule binding domain PF13411 MerR HTH family regulatory protein PF01084 Ribosomal protein S18 PF00436 Single-strand binding protein family PF01250 Ribosomal protein S6 PF01926 50S ribosome-binding GTPase PF06071 Protein of unknown function (DUF933) PF06107 Bacterial protein of unknown function (DUF951) PF06866 Protein of unknown function (DUF1256) PF04474 Protein of unknown function (DUF554) PF00266 Aminotransferase class-V PF17762 HTH domain found in ParB protein PF02195 ParB-like nuclease domain PF13614 AAA domain PF17762 HTH domain found in ParB protein PF02195 ParB-like nuclease domain PF02527 rRNA small subunit methyltransferase G PF01134 Glucose inhibited division protein A PF13932 GidA associated domain PF01926 50S ribosome-binding GTPase PF12631 MnmE helical domain PF10396 GTP-binding protein TrmE N-terminus PF14804 Jag N-terminus PF01424 R3H domain PF02096 60Kd inner membrane protein PF00825 Ribonuclease P PF00468 Ribosomal protein L34 PF00398 Ribosomal RNA adenine dimethylase PF01636 Phosphotransferase enzyme family PF07441 SigmaK-factor processing regulatory protein BofA PF00892 EamA-like transporter family PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF02805 Metal binding domain of Ada PF12833 Helix-turn-helix domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00989 PAS fold PF17203 Single cache domain 3 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain PF00072 Response regulator receiver domain PF03390 2-hydroxycarboxylate transporter family PF00881 Nitroreductase family PF13411 MerR HTH family regulatory protein PF07739 TipAS antibiotic-recognition domain PF00298 Ribosomal protein L11, RNA binding domain PF03946 Ribosomal protein L11, N-terminal domain PF04299 Putative FMN-binding domain PF00128 Alpha amylase, catalytic domain PF01740 STAS domain PF00916 Sulfate permease family PF01156 Inosine-uridine preferring nucleoside hydrolase PF01209 ubiE/COQ5 methyltransferase family PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase PF01979 Amidohydrolase family PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF01037 Lrp/AsnC ligand binding domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF17202 Single cache domain 3 PF01810 LysE type translocator PF13419 Haloacid dehalogenase-like hydrolase PF01810 LysE type translocator PF00155 Aminotransferase class I and II PF00392 Bacterial regulatory proteins, gntR family PF01966 HD domain PF08267 Cobalamin-independent synthase, N-terminal domain PF01717 Cobalamin-independent synthase, Catalytic domain PF00005 ABC transporter PF01276 Orn/Lys/Arg decarboxylase, major domain PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain PF13302 Acetyltransferase (GNAT) domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF03412 Peptidase C39 family PF02223 Thymidylate kinase PF13575 Domain of unknown function (DUF4135) PF05147 Lanthionine synthetase C-like protein PF14867 Lantibiotic alpha PF00204 DNA gyrase B PF00986 DNA gyrase B subunit, carboxyl terminus PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF01751 Toprim domain PF01594 AI-2E family transporter PF02673 Bacitracin resistance protein BacA PF02080 TrkA-C domain PF02254 TrkA-N domain PF02080 TrkA-C domain PF02254 TrkA-N domain PF00005 ABC transporter PF00528 Binding-protein-dependent transport system inner membrane component PF09115 DNA polymerase III, delta subunit, C terminal PF04468 PSP1 C-terminal conserved region PF13416 Bacterial extracellular solute-binding protein PF17853 GGDEF-like domain PF12833 Helix-turn-helix domain PF07470 Glycosyl Hydrolase Family 88 PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF01758 Sodium Bile acid symporter family PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus PF08666 SAF domain PF06156 Initiation control protein YabA PF01232 Mannitol dehydrogenase Rossmann domain PF08125 Mannitol dehydrogenase C-terminal domain PF01202 Shikimate kinase PF03477 ATP cone domain PF02867 Ribonucleotide reductase, barrel domain PF00317 Ribonucleotide reductase, all-alpha domain PF05175 Methyltransferase small domain PF00268 Ribonucleotide reductase, small chain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF01638 HxlR-like helix-turn-helix PF01541 GIY-YIG catalytic domain PF00005 ABC transporter PF08402 TOBE domain PF01547 Bacterial extracellular solute-binding protein PF00528 Binding-protein-dependent transport system inner membrane component PF01297 Zinc-uptake complex component A periplasmic PF01694 Rhomboid family PF01648 4'-phosphopantetheinyl transferase superfamily PF00842 Alanine racemase, C-terminal domain PF01168 Alanine racemase, N-terminal domain PF01402 Ribbon-helix-helix protein, copG family PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system PF08678 Rsbr N terminal PF01740 STAS domain PF01740 STAS domain PF13581 Histidine kinase-like ATPase domain PF08673 Phosphoserine phosphatase RsbU, N-terminal domain PF07228 Stage II sporulation protein E (SpoIIE) PF01740 STAS domain PF13581 Histidine kinase-like ATPase domain PF04542 Sigma-70 region 2 PF04539 Sigma-70 region 3 PF04545 Sigma-70, region 4 PF17674 HHH domain PF00575 S1 RNA binding domain PF09371 Tex-like protein N-terminal domain PF16921 Tex protein YqgF-like domain PF10263 SprT-like family PF17283 SprT-like zinc ribbon domain PF00465 Iron-containing alcohol dehydrogenase PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00171 Aldehyde dehydrogenase family PF01053 Cys/Met metabolism PLP-dependent enzyme PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE PF03989 DNA gyrase C-terminal domain, beta-propeller PF00521 DNA gyrase/topoisomerase IV, subunit A PF08264 Anticodon-binding domain of tRNA PF09334 tRNA synthetases class I (M) PF01588 Putative tRNA binding domain PF00814 Glycoprotease family PF00583 Acetyltransferase (GNAT) family PF00814 Glycoprotease family PF02629 CoA binding domain PF06971 Putative DNA-binding protein N-terminus PF02416 mttA/Hcf106 family PF00902 Sec-independent protein translocase protein (TatC) PF07690 Major Facilitator Superfamily PF02595 Glycerate kinase family PF01026 TatD related DNase PF00403 Heavy-metal-associated domain PF00403 Heavy-metal-associated domain PF02583 Metal-sensitive transcriptional repressor PF02517 CPBP intramembrane metalloprotease PF00166 Chaperonin 10 Kd subunit PF00118 TCP-1/cpn60 chaperonin family PF02743 Cache domain PF00672 HAMP domain PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle PF00528 Binding-protein-dependent transport system inner membrane component PF00005 ABC transporter PF08352 Oligopeptide/dipeptide transporter, C-terminal region PF03551 Transcriptional regulator PadR-like family PF13331 Domain of unknown function (DUF4093) PF13662 Toprim domain PF00067 Cytochrome P450 PF00196 Bacterial regulatory proteins, luxR family PF00072 Response regulator receiver domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF07730 Histidine kinase PF00398 Ribosomal RNA adenine dimethylase PF14502 Helix-turn-helix domain PF14503 YhfZ C-terminal domain PF10941 Protein of unknown function DUF2620 PF10797 Protein of unknown function PF00155 Aminotransferase class I and II PF01168 Alanine racemase, N-terminal domain PF01676 Metalloenzyme superfamily PF05582 YabG peptidase U57 PF00232 Glycosyl hydrolase family 1 PF02386 Cation transport protein PF18448 Carbohydrate binding domain PF03442 Carbohydrate binding domain X2 PF00150 Cellulase (glycosyl hydrolase family 5) PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF07726 ATPase family associated with various cellular activities (AAA) PF17863 AAA lid domain PF01882 Protein of unknown function DUF58 PF06257 Biofilm formation stimulator VEG PF11992 Domain of unknown function (DUF3488) PF13559 Domain of unknown function (DUF4129) PF01841 Transglutaminase-like superfamily PF00117 Glutamine amidotransferase class-I PF00958 GMP synthase C terminal domain PF02540 NAD synthase PF00860 Permease family PF00667 FAD binding domain PF00258 Flavodoxin PF00175 Oxidoreductase NAD-binding domain PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF00269 Small, acid-soluble spore proteins, alpha/beta type PF07690 Major Facilitator Superfamily PF04324 BFD-like [2Fe-2S] binding domain PF01077 Nitrite and sulphite reductase 4Fe-4S domain PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain PF07992 Pyridine nucleotide-disulphide oxidoreductase PF18267 Rubredoxin NAD+ reductase C-terminal domain PF00355 Rieske [2Fe-2S] domain PF04879 Molybdopterin oxidoreductase Fe4S4 domain PF00384 Molybdopterin oxidoreductase PF01568 Molydopterin dinucleotide binding domain PF03475 3-alpha domain PF03473 MOSC domain PF02797 Chalcone and stilbene synthases, C-terminal domain PF00195 Chalcone and stilbene synthases, N-terminal domain PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family PF04542 Sigma-70 region 2 PF08281 Sigma-70, region 4 PF08544 GHMP kinases C terminal PF00288 GHMP kinases N terminal domain PF10035 Uncharacterized protein conserved in bacteria (DUF2179) PF14044 NETI protein PF00731 AIR carboxylase PF02222 ATP-grasp domain PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain PF10397 Adenylosuccinate lyase C-terminus PF00206 Lyase PF01259 SAICAR synthetase PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain PF00156 Phosphoribosyl transferase domain PF00156 Phosphoribosyl transferase domain PF09182 Bacterial purine repressor, N-terminal PF00586 AIR synthase related protein, N-terminal domain PF02769 AIR synthase related protein, C-terminal domain PF00551 Formyl transferase PF01808 AICARFT/IMPCHase bienzyme PF02142 MGS-like domain PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF02843 Phosphoribosylglycinamide synthetase, C domain PF02844 Phosphoribosylglycinamide synthetase, N domain PF13382 Adenine deaminase C-terminal domain PF01979 Amidohydrolase family PF11258 Protein of unknown function (DUF3048) N-terminal domain PF17479 Protein of unknown function (DUF3048) C-terminal domain PF01371 Trp repressor protein PF13382 Adenine deaminase C-terminal domain PF01979 Amidohydrolase family PF00072 Response regulator receiver domain PF01042 Endoribonuclease L-PSP PF01906 Putative heavy-metal-binding PF01884 PcrB family PF00580 UvrD/REP helicase N-terminal domain PF13361 UvrD-like helicase C-terminal domain PF00533 BRCA1 C Terminus (BRCT) domain PF01653 NAD-dependent DNA ligase adenylation domain PF03120 NAD-dependent DNA ligase OB-fold domain PF03119 NAD-dependent DNA ligase C4 zinc finger domain PF12826 Helix-hairpin-helix motif PF07537 CamS sex pheromone cAM373 precursor PF04026 SpoVG PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF00005 ABC transporter PF01638 HxlR-like helix-turn-helix PF02082 Transcriptional regulator PF07992 Pyridine nucleotide-disulphide oxidoreductase PF01209 ubiE/COQ5 methyltransferase family PF00474 Sodium:solute symporter family PF00132 Bacterial transferase hexapeptide (six repeats) PF00483 Nucleotidyl transferase PF00654 Voltage gated chloride channel PF02686 Glu-tRNAGln amidotransferase C subunit PF01425 Amidase PF02934 GatB/GatE catalytic domain PF02637 GatB domain PF06445 GyrI-like small molecule binding domain PF14572 Phosphoribosyl synthetase-associated domain PF13793 N-terminal domain of ribose phosphate pyrophosphokinase PF01593 Flavin containing amine oxidoreductase PF07075 Protein of unknown function (DUF1343) PF00933 Glycosyl hydrolase family 3 N terminal domain PF01915 Glycosyl hydrolase family 3 C-terminal domain PF00781 Diacylglycerol kinase catalytic domain PF01386 Ribosomal L25p family PF14693 Ribosomal protein TL5, C-terminal domain PF00171 Aldehyde dehydrogenase family PF03099 Biotin/lipoate A/B protein ligase family PF10437 Bacterial lipoate protein ligase C-terminus PF00082 Subtilase family PF00082 Subtilase family PF00082 Subtilase family PF00893 Small Multidrug Resistance protein PF00893 Small Multidrug Resistance protein PF01938 TRAM domain PF05958 tRNA (Uracil-5-)-methyltransferase PF01195 Peptidyl-tRNA hydrolase PF01609 Transposase DDE domain PF05257 CHAP domain PF01476 LysM domain PF01022 Bacterial regulatory protein, arsR family PF03575 Peptidase family S51 PF00544 Pectate lyase PF00480 ROK family PF02559 CarD-like/TRCF domain PF00270 DEAD/DEAH box helicase PF00271 Helicase conserved C-terminal domain PF03461 TRCF domain PF17757 UvrB interaction domain PF03480 Bacterial extracellular solute-binding protein, family 7 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component PF06808 Tripartite ATP-independent periplasmic transporter, DctM component PF16338 Domain of unknown function (DUF4968) PF17137 Domain of unknown function (DUF5110) PF13802 Galactose mutarotase-like PF01055 Glycosyl hydrolases family 31 PF02614 Glucuronate isomerase PF03786 D-mannonate dehydratase (UxuA) PF00106 short chain dehydrogenase PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF01408 Oxidoreductase family, NAD-binding Rossmann fold PF02894 Oxidoreductase family, C-terminal alpha/beta domain PF04014 Antidote-toxin recognition MazE, bacterial antitoxin PF15714 Stage V sporulation protein T C-terminal, transcription factor PF12833 Helix-turn-helix domain PF10114 Sensory domain found in PocR PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00005 ABC transporter PF17755 UvrA DNA-binding domain PF17760 UvrA interaction domain PF00144 Beta-lactamase PF03176 MMPL family PF01943 Polysaccharide biosynthesis protein PF14667 Polysaccharide biosynthesis C-terminal domain PF02311 AraC-like ligand binding domain PF12833 Helix-turn-helix domain PF00892 EamA-like transporter family PF03819 MazG nucleotide pyrophosphohydrolase domain PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases PF01638 HxlR-like helix-turn-helix PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00115 Cytochrome C and Quinol oxidase polypeptide I PF00116 Cytochrome C oxidase subunit II, periplasmic domain PF02790 Cytochrome C oxidase subunit II, transmembrane domain PF01479 S4 domain PF07875 Coat F domain PF03600 Citrate transporter PF01979 Amidohydrolase family PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase PF00111 2Fe-2S iron-sulfur cluster binding domain PF01799 [2Fe-2S] binding domain PF07873 YabP family PF02687 FtsX-like permease family PF00005 ABC transporter PF09349 OHCU decarboxylase PF01014 Uricase PF09349 OHCU decarboxylase PF01014 Uricase PF00576 HIUase/Transthyretin family PF09578 Spore cortex protein YabQ (Spore_YabQ) PF07687 Peptidase dimerisation domain PF01546 Peptidase family M20/M25/M40 PF00266 Aminotransferase class-V PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PF03608 PTS system enzyme II sorbitol-specific factor PF07663 Sorbitol phosphotransferase enzyme II C-terminus PF03612 Sorbitol phosphotransferase enzyme II N-terminus PF04198 Putative sugar-binding domain PF00575 S1 RNA binding domain PF00202 Aminotransferase class-III PF00480 ROK family PF09261 Alpha mannosidase middle domain PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 PF07748 Glycosyl hydrolases family 38 C-terminal domain PF01074 Glycosyl hydrolases family 38 N-terminal domain PF09261 Alpha mannosidase middle domain PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 PF07748 Glycosyl hydrolases family 38 C-terminal domain PF01074 Glycosyl hydrolases family 38 N-terminal domain PF07694 5TMR of 5TMR-LYT PF13492 GAF domain PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF06580 Histidine kinase PF12010 Domain of unknown function (DUF3502) PF07228 Stage II sporulation protein E (SpoIIE) PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF17042 Nucleotide-binding C-terminal domain PF07005 Sugar-binding N-terminal domain PF17042 Nucleotide-binding C-terminal domain PF07005 Sugar-binding N-terminal domain PF04166 Pyridoxal phosphate biosynthetic protein PdxA PF02447 GntP family permease PF00092 von Willebrand factor type A domain PF01476 LysM domain PF03734 L,D-transpeptidase catalytic domain PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00664 ABC transporter transmembrane region PF00005 ABC transporter PF00005 ABC transporter PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF00512 His Kinase A (phospho-acceptor) domain PF00072 Response regulator receiver domain PF00486 Transcriptional regulatory protein, C terminal PF00069 Protein kinase domain PF13847 Methyltransferase domain PF01943 Polysaccharide biosynthesis protein PF02898 Nitric oxide synthase, oxygenase domain PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain PF12867 DinB superfamily PF00294 pfkB family carbohydrate kinase PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF09515 Thiamine transporter protein (Thia_YuaJ) PF06738 Putative threonine/serine exporter PF03485 Arginyl tRNA synthetase N terminal domain PF05746 DALR anticodon binding domain PF00750 tRNA synthetases class I (R) PF13302 Acetyltransferase (GNAT) domain PF00126 Bacterial regulatory helix-turn-helix protein, lysR family PF03466 LysR substrate binding domain PF00893 Small Multidrug Resistance protein PF00893 Small Multidrug Resistance protein PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PF00367 phosphotransferase system, EIIB PF02378 Phosphotransferase system, EIIC PF03123 CAT RNA binding domain PF00874 PRD domain PF00455 DeoR C terminal sensor domain PF08220 DeoR-like helix-turn-helix domain PF01171 PP-loop family PF09179 TilS substrate binding domain PF11734 TilS substrate C-terminal domain PF12833 Helix-turn-helix domain PF04134 Protein of unknown function, DUF393 PF01758 Sodium Bile acid symporter family PF09350 Domain of unknown function (DUF1992) PF01554 MatE PF00156 Phosphoribosyl transferase domain PF01693 Caulimovirus viroplasmin PF00171 Aldehyde dehydrogenase family PF02417 Chromate transporter PF02417 Chromate transporter PF00004 ATPase family associated with various cellular activities (AAA) PF17862 AAA+ lid domain PF06480 FtsH Extracellular PF01434 Peptidase family M41 PF00128 Alpha amylase, catalytic domain PF16657 Maltogenic Amylase, C-terminal domain PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF00245 Alkaline phosphatase PF00296 Luciferase-like monooxygenase PF03309 Type III pantothenate kinase PF00753 Metallo-beta-lactamase superfamily PF07690 Major Facilitator Superfamily PF01554 MatE PF03807 NADP oxidoreductase coenzyme F420-dependent PF14748 Pyrroline-5-carboxylate reductase dimerisation PF14167 YfkD-like protein PF04055 Radical SAM superfamily PF08756 YfkB-like domain PF01430 Hsp33 protein PF05681 Fumarate hydratase (Fumerase) PF05683 Fumarase C-terminus PF01522 Polysaccharide deacetylase PF01938 TRAM domain PF05958 tRNA (Uracil-5-)-methyltransferase PF04266 ASCH domain PF00457 Glycosyl hydrolases family 11 PF03781 Sulfatase-modifying factor enzyme 1 PF00291 Pyridoxal-phosphate dependent enzyme PF00356 Bacterial regulatory proteins, lacI family PF00141 Peroxidase PF02146 Sir2 family PF02302 PTS system, Lactose/Cellobiose specific IIB subunit PF02255 PTS system, Lactose/Cellobiose specific IIA subunit PF02378 Phosphotransferase system, EIIC PF04794 YdjC-like protein PF00392 Bacterial regulatory proteins, gntR family PF07702 UTRA domain PF00041 Fibronectin type III domain PF00704 Glycosyl hydrolases family 18 PF06339 Ectoine synthase PF00202 Aminotransferase class-III PF00583 Acetyltransferase (GNAT) family PF04715 Anthranilate synthase component I, N terminal region PF00425 chorismate binding enzyme PF02631 RecX family PF08838 Protein of unknown function (DUF1811) PF08176 Small acid-soluble spore protein K family PF04307 LexA-binding, inner membrane-associated putative hydrolase PF00117 Glutamine amidotransferase class-I PF00730 HhH-GPD superfamily base excision DNA repair protein PF14815 NUDIX domain PF08240 Alcohol dehydrogenase GroES-like domain PF00107 Zinc-binding dehydrogenase PF00155 Aminotransferase class I and II PF04167 Protein of unknown function (DUF402)