locus-tag class description NPA28_00005 PF00308 Bacterial dnaA protein NPA28_00005 PF08299 Bacterial dnaA protein helix-turn-helix NPA28_00005 PF11638 DnaA N-terminal domain NPA28_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NPA28_00010 PF02767 DNA polymerase III beta subunit, central domain NPA28_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NPA28_00020 PF02463 RecF/RecN/SMC N terminal domain NPA28_00025 PF04025 Domain of unknown function (DUF370) NPA28_00030 PF00204 DNA gyrase B NPA28_00030 PF00986 DNA gyrase B subunit, carboxyl terminus NPA28_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_00030 PF01751 Toprim domain NPA28_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller NPA28_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A NPA28_00065 PF14175 YaaC-like Protein NPA28_00070 PF00478 IMP dehydrogenase / GMP reductase domain NPA28_00070 PF00571 CBS domain NPA28_00075 PF07943 Penicillin-binding protein 5, C-terminal domain NPA28_00075 PF00768 D-alanyl-D-alanine carboxypeptidase NPA28_00080 PF01680 SOR/SNZ family NPA28_00085 PF01174 SNO glutamine amidotransferase family NPA28_00090 PF02403 Seryl-tRNA synthetase N-terminal domain NPA28_00090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPA28_00100 PF01712 Deoxynucleoside kinase NPA28_00105 PF01712 Deoxynucleoside kinase NPA28_00110 PF00704 Glycosyl hydrolases family 18 NPA28_00110 PF01476 LysM domain NPA28_00115 PF00857 Isochorismatase family NPA28_00120 PF14437 MafB19-like deaminase NPA28_00130 PF12169 DNA polymerase III subunits gamma and tau domain III NPA28_00135 PF02575 YbaB/EbfC DNA-binding family NPA28_00140 PF02132 RecR protein NPA28_00140 PF13662 Toprim domain NPA28_00145 PF10704 Protein of unknown function (DUF2508) NPA28_00150 PF07441 SigmaK-factor processing regulatory protein BofA NPA28_00180 PF10764 Inhibitor of sigma-G Gin NPA28_00185 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein NPA28_00190 PF05816 Toxic anion resistance protein (TelA) NPA28_00195 PF01276 Orn/Lys/Arg decarboxylase, major domain NPA28_00195 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NPA28_00200 PF02223 Thymidylate kinase NPA28_00205 PF06153 Cyclic-di-AMP receptor NPA28_00210 PF03885 Protein of unknown function (DUF327) NPA28_00215 PF09115 DNA polymerase III, delta subunit, C terminal NPA28_00220 PF04468 PSP1 C-terminal conserved region NPA28_00225 PF06156 Initiation control protein YabA NPA28_00230 PF05175 Methyltransferase small domain NPA28_00235 PF01541 GIY-YIG catalytic domain NPA28_00240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPA28_00245 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NPA28_00245 PF18277 AbrB C-terminal domain NPA28_00250 PF08264 Anticodon-binding domain of tRNA NPA28_00250 PF09334 tRNA synthetases class I (M) NPA28_00250 PF01588 Putative tRNA binding domain NPA28_00255 PF01026 TatD related DNase NPA28_00260 PF06725 3D domain NPA28_00260 PF03990 G5-linked-Ubiquitin-like domain NPA28_00260 PF07501 G5 domain NPA28_00265 PF13331 Domain of unknown function (DUF4093) NPA28_00265 PF13662 Toprim domain NPA28_00270 PF00398 Ribosomal RNA adenine dimethylase NPA28_00275 PF05582 YabG peptidase U57 NPA28_00280 PF06257 Biofilm formation stimulator VEG NPA28_00285 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPA28_00290 PF00288 GHMP kinases N terminal domain NPA28_00290 PF08544 GHMP kinases C terminal NPA28_00295 PF09182 Bacterial purine repressor, N-terminal NPA28_00295 PF00156 Phosphoribosyl transferase domain NPA28_00300 PF01042 Endoribonuclease L-PSP NPA28_00305 PF04026 SpoVG NPA28_00310 PF00132 Bacterial transferase hexapeptide (six repeats) NPA28_00310 PF00483 Nucleotidyl transferase NPA28_00315 PF14572 Phosphoribosyl synthetase-associated domain NPA28_00315 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NPA28_00320 PF01386 Ribosomal L25p family NPA28_00320 PF14693 Ribosomal protein TL5, C-terminal domain NPA28_00325 PF01195 Peptidyl-tRNA hydrolase NPA28_00330 PF10955 Protein of unknown function (DUF2757) NPA28_00335 PF02559 CarD-like/TRCF domain NPA28_00335 PF00270 DEAD/DEAH box helicase NPA28_00335 PF00271 Helicase conserved C-terminal domain NPA28_00335 PF03461 TRCF domain NPA28_00335 PF17757 UvrB interaction domain NPA28_00340 PF15714 Stage V sporulation protein T C-terminal, transcription factor NPA28_00340 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NPA28_00345 PF01943 Polysaccharide biosynthesis protein NPA28_00345 PF14667 Polysaccharide biosynthesis C-terminal domain NPA28_00350 PF03819 MazG nucleotide pyrophosphohydrolase domain NPA28_00350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPA28_00355 PF01479 S4 domain NPA28_00360 PF07873 YabP family NPA28_00365 PF09578 Spore cortex protein YabQ (Spore_YabQ) NPA28_00370 PF04977 Septum formation initiator NPA28_00375 PF00575 S1 RNA binding domain NPA28_00390 PF07228 Stage II sporulation protein E (SpoIIE) NPA28_00395 PF00092 von Willebrand factor type A domain NPA28_00400 PF00069 Protein kinase domain NPA28_00405 PF01171 PP-loop family NPA28_00405 PF09179 TilS substrate binding domain NPA28_00405 PF11734 TilS substrate C-terminal domain NPA28_00410 PF00156 Phosphoribosyl transferase domain NPA28_00415 PF00004 ATPase family associated with various cellular activities (AAA) NPA28_00415 PF17862 AAA+ lid domain NPA28_00415 PF06480 FtsH Extracellular NPA28_00415 PF01434 Peptidase family M41 NPA28_00420 PF03309 Type III pantothenate kinase NPA28_00425 PF01430 Hsp33 protein NPA28_00430 PF13145 PPIC-type PPIASE domain NPA28_00435 PF00291 Pyridoxal-phosphate dependent enzyme NPA28_00440 PF04715 Anthranilate synthase component I, N terminal region NPA28_00440 PF00425 chorismate binding enzyme NPA28_00445 PF00117 Glutamine amidotransferase class-I NPA28_00450 PF01063 Amino-transferase class IV NPA28_00455 PF00809 Pterin binding enzyme NPA28_00460 PF02152 Dihydroneopterin aldolase NPA28_00465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NPA28_00470 PF01381 Helix-turn-helix NPA28_00475 PF01207 Dihydrouridine synthase (Dus) NPA28_00480 PF00152 tRNA synthetases class II (D, K and N) NPA28_00480 PF01336 OB-fold nucleic acid binding domain NPA28_00560 PF05848 CtsR N-terminal HTH domain NPA28_00560 PF17727 CtsR C-terminal dimerization domain NPA28_00565 PF02151 UvrB/uvrC motif NPA28_00570 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain NPA28_00575 PF00004 ATPase family associated with various cellular activities (AAA) NPA28_00575 PF07724 AAA domain (Cdc48 subfamily) NPA28_00575 PF17871 AAA lid domain NPA28_00575 PF02861 Clp amino terminal domain, pathogenicity island component NPA28_00575 PF10431 C-terminal, D2-small domain, of ClpB protein NPA28_00580 PF18073 Rubredoxin metal binding domain NPA28_00585 PF02457 DisA bacterial checkpoint controller nucleotide-binding NPA28_00585 PF10635 DisA bacterial checkpoint controller linker region NPA28_00595 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NPA28_00600 PF02542 YgbB family NPA28_00605 PF00749 tRNA synthetases class I (E and Q), catalytic domain NPA28_00610 PF00132 Bacterial transferase hexapeptide (six repeats) NPA28_00610 PF06426 Serine acetyltransferase, N-terminal NPA28_00615 PF09190 DALR domain NPA28_00615 PF01406 tRNA synthetases class I (C) catalytic domain NPA28_00625 PF00588 SpoU rRNA Methylase family NPA28_00625 PF08032 RNA 2'-O ribose methyltransferase substrate binding NPA28_00630 PF05991 YacP-like NYN domain NPA28_00635 PF04542 Sigma-70 region 2 NPA28_00635 PF08281 Sigma-70, region 4 NPA28_00640 PF00471 Ribosomal protein L33 NPA28_00645 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NPA28_00650 PF00467 KOW motif NPA28_00650 PF02357 Transcription termination factor nusG NPA28_00655 PF00298 Ribosomal protein L11, RNA binding domain NPA28_00655 PF03946 Ribosomal protein L11, N-terminal domain NPA28_00660 PF00687 Ribosomal protein L1p/L10e family NPA28_00665 PF00466 Ribosomal protein L10 NPA28_00670 PF00542 Ribosomal protein L7/L12 C-terminal domain NPA28_00670 PF16320 Ribosomal protein L7/L12 dimerisation domain NPA28_00675 PF05175 Methyltransferase small domain NPA28_00680 PF04563 RNA polymerase beta subunit NPA28_00680 PF04561 RNA polymerase Rpb2, domain 2 NPA28_00680 PF04565 RNA polymerase Rpb2, domain 3 NPA28_00680 PF10385 RNA polymerase beta subunit external 1 domain NPA28_00680 PF00562 RNA polymerase Rpb2, domain 6 NPA28_00680 PF04560 RNA polymerase Rpb2, domain 7 NPA28_00685 PF04997 RNA polymerase Rpb1, domain 1 NPA28_00685 PF00623 RNA polymerase Rpb1, domain 2 NPA28_00685 PF04983 RNA polymerase Rpb1, domain 3 NPA28_00685 PF05000 RNA polymerase Rpb1, domain 4 NPA28_00685 PF04998 RNA polymerase Rpb1, domain 5 NPA28_00690 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NPA28_00695 PF00164 Ribosomal protein S12/S23 NPA28_00700 PF00177 Ribosomal protein S7p/S5e NPA28_00705 PF00679 Elongation factor G C-terminus NPA28_00705 PF14492 Elongation Factor G, domain II NPA28_00705 PF03764 Elongation factor G, domain IV NPA28_00705 PF00009 Elongation factor Tu GTP binding domain NPA28_00705 PF03144 Elongation factor Tu domain 2 NPA28_00710 PF00009 Elongation factor Tu GTP binding domain NPA28_00710 PF03144 Elongation factor Tu domain 2 NPA28_00710 PF03143 Elongation factor Tu C-terminal domain NPA28_00715 PF12146 Serine aminopeptidase, S33 NPA28_00720 PF00338 Ribosomal protein S10p/S20e NPA28_00725 PF00297 Ribosomal protein L3 NPA28_00730 PF00573 Ribosomal protein L4/L1 family NPA28_00735 PF00276 Ribosomal protein L23 NPA28_00740 PF03947 Ribosomal Proteins L2, C-terminal domain NPA28_00740 PF00181 Ribosomal Proteins L2, RNA binding domain NPA28_00745 PF00203 Ribosomal protein S19 NPA28_00750 PF00237 Ribosomal protein L22p/L17e NPA28_00755 PF07650 KH domain NPA28_00755 PF00189 Ribosomal protein S3, C-terminal domain NPA28_00760 PF00252 Ribosomal protein L16p/L10e NPA28_00765 PF00831 Ribosomal L29 protein NPA28_00770 PF00366 Ribosomal protein S17 NPA28_00775 PF00238 Ribosomal protein L14p/L23e NPA28_00780 PF00467 KOW motif NPA28_00780 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NPA28_00785 PF00281 Ribosomal protein L5 NPA28_00785 PF00673 ribosomal L5P family C-terminus NPA28_00790 PF00253 Ribosomal protein S14p/S29e NPA28_00795 PF00410 Ribosomal protein S8 NPA28_00800 PF00347 Ribosomal protein L6 NPA28_00805 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NPA28_00810 PF03719 Ribosomal protein S5, C-terminal domain NPA28_00810 PF00333 Ribosomal protein S5, N-terminal domain NPA28_00815 PF00327 Ribosomal protein L30p/L7e NPA28_00820 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NPA28_00825 PF00344 SecY translocase NPA28_00830 PF05191 Adenylate kinase, active site lid NPA28_00835 PF00557 Metallopeptidase family M24 NPA28_00845 PF01176 Translation initiation factor 1A / IF-1 NPA28_00850 PF00444 Ribosomal protein L36 NPA28_00855 PF00416 Ribosomal protein S13/S18 NPA28_00860 PF00411 Ribosomal protein S11 NPA28_00865 PF01000 RNA polymerase Rpb3/RpoA insert domain NPA28_00865 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NPA28_00865 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NPA28_00870 PF01196 Ribosomal protein L17 NPA28_00875 PF00005 ABC transporter NPA28_00880 PF00005 ABC transporter NPA28_00885 PF02361 Cobalt transport protein NPA28_00890 PF01416 tRNA pseudouridine synthase NPA28_00895 PF00572 Ribosomal protein L13 NPA28_00900 PF00380 Ribosomal protein S9/S16 NPA28_00905 PF08241 Methyltransferase domain NPA28_00910 PF10730 Protein of unknown function (DUF2521) NPA28_00915 PF01520 N-acetylmuramoyl-L-alanine amidase NPA28_00920 PF10609 NUBPL iron-transfer P-loop NTPase NPA28_00925 PF17898 Spore germination GerD central core domain NPA28_00930 PF14089 KinB-signalling pathway activation in sporulation NPA28_00935 PF01522 Polysaccharide deacetylase NPA28_01015 PF01740 STAS domain NPA28_01015 PF00916 Sulfate permease family NPA28_01020 PF01758 Sodium Bile acid symporter family NPA28_01025 PF00756 Putative esterase NPA28_01030 PF01032 FecCD transport family NPA28_01035 PF01032 FecCD transport family NPA28_01040 PF01497 Periplasmic binding protein NPA28_01045 PF12833 Helix-turn-helix domain NPA28_01045 PF01497 Periplasmic binding protein NPA28_01050 PF07075 Protein of unknown function (DUF1343) NPA28_01055 PF00933 Glycosyl hydrolase family 3 N terminal domain NPA28_01055 PF01915 Glycosyl hydrolase family 3 C-terminal domain NPA28_01060 PF00144 Beta-lactamase NPA28_01065 PF00367 phosphotransferase system, EIIB NPA28_01065 PF02378 Phosphotransferase system, EIIC NPA28_01070 PF01418 Helix-turn-helix domain, rpiR family NPA28_01070 PF01380 SIS domain NPA28_01075 PF01380 SIS domain NPA28_01085 PF04463 Protein of unknown function (DUF523) NPA28_01115 PF04542 Sigma-70 region 2 NPA28_01115 PF08281 Sigma-70, region 4 NPA28_01120 PF13490 Putative zinc-finger NPA28_01125 PF02457 DisA bacterial checkpoint controller nucleotide-binding NPA28_01130 PF07949 YbbR-like protein NPA28_01135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPA28_01135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPA28_01135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPA28_01135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPA28_01140 PF01380 SIS domain NPA28_01145 PF01569 PAP2 superfamily NPA28_01150 PF00361 Proton-conducting membrane transporter NPA28_01150 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NPA28_01155 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) NPA28_01170 PF10057 Uncharacterized conserved protein (DUF2294) NPA28_01180 PF07690 Major Facilitator Superfamily NPA28_01195 PF00376 MerR family regulatory protein NPA28_01195 PF09278 MerR, DNA binding NPA28_01200 PF00561 alpha/beta hydrolase fold NPA28_01205 PF00486 Transcriptional regulatory protein, C terminal NPA28_01205 PF00072 Response regulator receiver domain NPA28_01210 PF00512 His Kinase A (phospho-acceptor) domain NPA28_01210 PF00672 HAMP domain NPA28_01220 PF00069 Protein kinase domain NPA28_01230 PF16226 Domain of unknown function (DUF4885) NPA28_01235 PF00324 Amino acid permease NPA28_01240 PF17334 Minor curli fiber component A NPA28_01245 PF17340 Family of unknown function (DUF5370) NPA28_01250 PF00905 Penicillin binding protein transpeptidase domain NPA28_01255 PF00067 Cytochrome P450 NPA28_01265 PF13520 Amino acid permease NPA28_01270 PF03009 Glycerophosphoryl diester phosphodiesterase family NPA28_01275 PF07690 Major Facilitator Superfamily NPA28_01280 PF10852 Protein of unknown function (DUF2651) NPA28_01285 PF01047 MarR family NPA28_01285 PF00583 Acetyltransferase (GNAT) family NPA28_01290 PF07690 Major Facilitator Superfamily NPA28_01300 PF08924 Domain of unknown function (DUF1906) NPA28_01300 PF01471 Putative peptidoglycan binding domain NPA28_01310 PF00465 Iron-containing alcohol dehydrogenase NPA28_01315 PF02222 ATP-grasp domain NPA28_01320 PF00089 Trypsin NPA28_01325 PF10794 Protein of unknown function (DUF2606) NPA28_01330 PF12697 Alpha/beta hydrolase family NPA28_01335 PF01066 CDP-alcohol phosphatidyltransferase NPA28_01340 PF09335 SNARE associated Golgi protein NPA28_01345 PF02666 Phosphatidylserine decarboxylase NPA28_01355 PF05139 Erythromycin esterase NPA28_01360 PF12833 Helix-turn-helix domain NPA28_01365 PF00581 Rhodanese-like domain NPA28_01365 PF17773 UPF0176 acylphosphatase like domain NPA28_01365 PF12368 Rhodanase C-terminal NPA28_01370 PF00375 Sodium:dicarboxylate symporter family NPA28_01375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPA28_01375 PF00367 phosphotransferase system, EIIB NPA28_01375 PF02378 Phosphotransferase system, EIIC NPA28_01380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NPA28_01385 PF00392 Bacterial regulatory proteins, gntR family NPA28_01385 PF07702 UTRA domain NPA28_01390 PF07853 Protein of unknown function (DUF1648) NPA28_01395 PF01063 Amino-transferase class IV NPA28_01400 PF00324 Amino acid permease NPA28_01405 PF02574 Homocysteine S-methyltransferase NPA28_01410 PF01235 Sodium:alanine symporter family NPA28_01415 PF04960 Glutaminase NPA28_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_01425 PF00072 Response regulator receiver domain NPA28_01425 PF08664 YcbB domain NPA28_01430 PF00701 Dihydrodipicolinate synthetase family NPA28_01435 PF00171 Aldehyde dehydrogenase family NPA28_01440 PF07690 Major Facilitator Superfamily NPA28_01445 PF13378 Enolase C-terminal domain-like NPA28_01450 PF07729 FCD domain NPA28_01450 PF00392 Bacterial regulatory proteins, gntR family NPA28_01455 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NPA28_01455 PF08666 SAF domain NPA28_01460 PF01636 Phosphotransferase enzyme family NPA28_01465 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein NPA28_01470 PF00892 EamA-like transporter family NPA28_01475 PF00486 Transcriptional regulatory protein, C terminal NPA28_01475 PF00072 Response regulator receiver domain NPA28_01480 PF00512 His Kinase A (phospho-acceptor) domain NPA28_01480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_01485 PF00005 ABC transporter NPA28_01505 PF10710 Protein of unknown function (DUF2512) NPA28_01510 PF07486 Cell Wall Hydrolase NPA28_01515 PF10138 vWA found in TerF C terminus NPA28_01525 PF09423 PhoD-like phosphatase NPA28_01525 PF16655 PhoD-like phosphatase, N-terminal domain NPA28_01530 PF02416 mttA/Hcf106 family NPA28_01535 PF00902 Sec-independent protein translocase protein (TatC) NPA28_01540 PF01470 Pyroglutamyl peptidase NPA28_01545 PF00266 Aminotransferase class-V NPA28_01550 PF07690 Major Facilitator Superfamily NPA28_01555 PF00440 Bacterial regulatory proteins, tetR family NPA28_01560 PF00710 Asparaginase, N-terminal NPA28_01560 PF17763 Glutaminase/Asparaginase C-terminal domain NPA28_01565 PF01674 Lipase (class 2) NPA28_01570 PF06271 RDD family NPA28_01575 PF05225 helix-turn-helix, Psq domain NPA28_01575 PF02810 SEC-C motif NPA28_01580 PF14501 GHKL domain NPA28_01585 PF04397 LytTr DNA-binding domain NPA28_01585 PF00072 Response regulator receiver domain NPA28_01590 PF00005 ABC transporter NPA28_01595 PF12679 ABC-2 family transporter protein NPA28_01600 PF00248 Aldo/keto reductase family NPA28_01605 PF11611 Domain of unknown function (DUF4352) NPA28_01605 PF17118 Domain of unknown function (DUF5105) NPA28_01615 PF16244 Domain of unknown function (DUF4901) NPA28_01620 PF16244 Domain of unknown function (DUF4901) NPA28_01625 PF13539 D-alanyl-D-alanine carboxypeptidase NPA28_01630 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_01640 PF00128 Alpha amylase, catalytic domain NPA28_01645 PF01297 Zinc-uptake complex component A periplasmic NPA28_01650 PF00005 ABC transporter NPA28_01655 PF00950 ABC 3 transport family NPA28_01660 PF00296 Luciferase-like monooxygenase NPA28_01665 PF02342 TerD domain NPA28_01670 PF02342 TerD domain NPA28_01675 PF02342 TerD domain NPA28_01680 PF03741 Integral membrane protein TerC family NPA28_01695 PF15608 PELOTA RNA binding domain NPA28_01695 PF11202 Phosphoribosyl transferase (PRTase) NPA28_01705 PF14266 Putative component of 'biosynthetic module' NPA28_01710 PF05816 Toxic anion resistance protein (TelA) NPA28_01715 PF07690 Major Facilitator Superfamily NPA28_01720 PF07690 Major Facilitator Superfamily NPA28_01730 PF00571 CBS domain NPA28_01730 PF00005 ABC transporter NPA28_01735 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_01740 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NPA28_01745 PF07687 Peptidase dimerisation domain NPA28_01745 PF01546 Peptidase family M20/M25/M40 NPA28_01750 PF03606 C4-dicarboxylate anaerobic carrier NPA28_01760 PF00128 Alpha amylase, catalytic domain NPA28_01760 PF16738 Starch-binding module 26 NPA28_01765 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NPA28_01765 PF00056 lactate/malate dehydrogenase, NAD binding domain NPA28_01770 PF02652 L-lactate permease NPA28_01775 PF07690 Major Facilitator Superfamily NPA28_01780 PF01047 MarR family NPA28_01785 PF01810 LysE type translocator NPA28_01790 PF08892 YqcI/YcgG family NPA28_01795 PF00324 Amino acid permease NPA28_01800 PF09347 Domain of unknown function (DUF1989) NPA28_01805 PF02540 NAD synthase NPA28_01820 PF01202 Shikimate kinase NPA28_01830 PF05448 Acetyl xylan esterase (AXE1) NPA28_01835 PF10127 RNA repair pathway DNA polymerase beta family NPA28_01840 PF01619 Proline dehydrogenase NPA28_01845 PF00171 Aldehyde dehydrogenase family NPA28_01850 PF00474 Sodium:solute symporter family NPA28_01855 PF13556 PucR C-terminal helix-turn-helix domain NPA28_01855 PF17853 GGDEF-like domain NPA28_01860 PF09323 Domain of unknown function (DUF1980) NPA28_01865 PF03773 Predicted permease NPA28_01870 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_01875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPA28_01880 PF00355 Rieske [2Fe-2S] domain NPA28_01885 PF18267 Rubredoxin NAD+ reductase C-terminal domain NPA28_01885 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_01885 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NPA28_01885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NPA28_01885 PF04324 BFD-like [2Fe-2S] binding domain NPA28_01890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NPA28_01890 PF00384 Molybdopterin oxidoreductase NPA28_01890 PF01568 Molydopterin dinucleotide binding domain NPA28_01895 PF18267 Rubredoxin NAD+ reductase C-terminal domain NPA28_01895 PF04324 BFD-like [2Fe-2S] binding domain NPA28_01895 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NPA28_01895 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_01900 PF07690 Major Facilitator Superfamily NPA28_01905 PF02649 Type I GTP cyclohydrolase folE2 NPA28_01910 PF03734 L,D-transpeptidase catalytic domain NPA28_01925 PF02492 CobW/HypB/UreG, nucleotide-binding domain NPA28_01925 PF07683 Cobalamin synthesis protein cobW C-terminal domain NPA28_01930 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_01935 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPA28_01940 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_01940 PF13823 Alcohol dehydrogenase GroES-associated NPA28_01940 PF00107 Zinc-binding dehydrogenase NPA28_01950 PF10925 Protein of unknown function (DUF2680) NPA28_01955 PF01047 MarR family NPA28_01965 PF00005 ABC transporter NPA28_01970 PF00232 Glycosyl hydrolase family 1 NPA28_01975 PF11033 Competence protein J (ComJ) NPA28_01980 PF14040 Deoxyribonuclease NucA/NucB NPA28_01985 PF17202 Single cache domain 3 NPA28_01985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_01985 PF00672 HAMP domain NPA28_01990 PF01380 SIS domain NPA28_01995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NPA28_02000 PF01638 HxlR-like helix-turn-helix NPA28_02005 PF13193 AMP-binding enzyme C-terminal domain NPA28_02005 PF00501 AMP-binding enzyme NPA28_02005 PF00550 Phosphopantetheine attachment site NPA28_02005 PF00668 Condensation domain NPA28_02015 PF17584 Bacillus competence protein S NPA28_02025 PF00501 AMP-binding enzyme NPA28_02025 PF13193 AMP-binding enzyme C-terminal domain NPA28_02025 PF00668 Condensation domain NPA28_02025 PF00550 Phosphopantetheine attachment site NPA28_02030 PF00501 AMP-binding enzyme NPA28_02030 PF00668 Condensation domain NPA28_02030 PF00975 Thioesterase domain NPA28_02030 PF13193 AMP-binding enzyme C-terminal domain NPA28_02030 PF00550 Phosphopantetheine attachment site NPA28_02035 PF00975 Thioesterase domain NPA28_02040 PF07690 Major Facilitator Superfamily NPA28_02045 PF14317 YcxB-like protein NPA28_02050 PF00892 EamA-like transporter family NPA28_02055 PF00155 Aminotransferase class I and II NPA28_02055 PF00392 Bacterial regulatory proteins, gntR family NPA28_02060 PF01648 4'-phosphopantetheinyl transferase superfamily NPA28_02070 PF00005 ABC transporter NPA28_02075 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_02080 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPA28_02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_02085 PF03466 LysR substrate binding domain NPA28_02095 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NPA28_02110 PF00561 alpha/beta hydrolase fold NPA28_02115 PF00854 POT family NPA28_02120 PF12708 Pectate lyase superfamily protein NPA28_02120 PF13229 Right handed beta helix region NPA28_02130 PF03323 Bacillus/Clostridium GerA spore germination protein NPA28_02135 PF05504 Spore germination B3/ GerAC like, C-terminal NPA28_02140 PF03845 Spore germination protein NPA28_02145 PF00005 ABC transporter NPA28_02150 PF02687 FtsX-like permease family NPA28_02150 PF12704 MacB-like periplasmic core domain NPA28_02155 PF00072 Response regulator receiver domain NPA28_02155 PF00486 Transcriptional regulatory protein, C terminal NPA28_02160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_02160 PF00512 His Kinase A (phospho-acceptor) domain NPA28_02160 PF00672 HAMP domain NPA28_02165 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_02170 PF11131 Rap-phr extracellular signalling NPA28_02175 PF09680 Family of unknown function NPA28_02180 PF09680 Family of unknown function NPA28_02185 PF13840 ACT domain NPA28_02185 PF00696 Amino acid kinase family NPA28_02190 PF01032 FecCD transport family NPA28_02195 PF01032 FecCD transport family NPA28_02200 PF00005 ABC transporter NPA28_02205 PF01497 Periplasmic binding protein NPA28_02210 PF07690 Major Facilitator Superfamily NPA28_02215 PF00440 Bacterial regulatory proteins, tetR family NPA28_02220 PF00881 Nitroreductase family NPA28_02225 PF03992 Antibiotic biosynthesis monooxygenase NPA28_02230 PF01022 Bacterial regulatory protein, arsR family NPA28_02235 PF00155 Aminotransferase class I and II NPA28_02235 PF00392 Bacterial regulatory proteins, gntR family NPA28_02240 PF00202 Aminotransferase class-III NPA28_02245 PF00171 Aldehyde dehydrogenase family NPA28_02250 PF06800 Sugar transport protein NPA28_02260 PF07987 Domain of unkown function (DUF1775) NPA28_02265 PF04234 CopC domain NPA28_02265 PF05425 Copper resistance protein D NPA28_02265 PF13115 YtkA-like NPA28_02270 PF08220 DeoR-like helix-turn-helix domain NPA28_02270 PF05573 NosL NPA28_02280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPA28_02280 PF02378 Phosphotransferase system, EIIC NPA28_02285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPA28_02290 PF08125 Mannitol dehydrogenase C-terminal domain NPA28_02290 PF01232 Mannitol dehydrogenase Rossmann domain NPA28_02295 PF00180 Isocitrate/isopropylmalate dehydrogenase NPA28_02300 PF01738 Dienelactone hydrolase family NPA28_02305 PF07977 FabA-like domain NPA28_02320 PF03746 LamB/YcsF family NPA28_02325 PF01566 Natural resistance-associated macrophage protein NPA28_02330 PF07286 Protein of unknown function (DUF1445) NPA28_02335 PF02682 Carboxyltransferase domain, subdomain C and D NPA28_02340 PF02626 Carboxyltransferase domain, subdomain A and B NPA28_02345 PF01614 Bacterial transcriptional regulator NPA28_02345 PF09339 IclR helix-turn-helix domain NPA28_02350 PF13472 GDSL-like Lipase/Acylhydrolase family NPA28_02355 PF13129 Protein of unknown function (DUF3953) NPA28_02360 PF03992 Antibiotic biosynthesis monooxygenase NPA28_02365 PF03717 Penicillin-binding Protein dimerisation domain NPA28_02365 PF00905 Penicillin binding protein transpeptidase domain NPA28_02365 PF05223 NTF2-like N-terminal transpeptidase domain NPA28_02370 PF00248 Aldo/keto reductase family NPA28_02375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPA28_02375 PF08279 HTH domain NPA28_02375 PF05043 Mga helix-turn-helix domain NPA28_02375 PF00874 PRD domain NPA28_02375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPA28_02380 PF00501 AMP-binding enzyme NPA28_02380 PF13193 AMP-binding enzyme C-terminal domain NPA28_02385 PF13649 Methyltransferase domain NPA28_02400 PF13302 Acetyltransferase (GNAT) domain NPA28_02405 PF16242 Pyridoxamine 5'-phosphate oxidase like NPA28_02410 PF10997 Alternate to MurJ NPA28_02415 PF02627 Carboxymuconolactone decarboxylase family NPA28_02420 PF12823 Domain of unknown function (DUF3817) NPA28_02435 PF01037 Lrp/AsnC ligand binding domain NPA28_02440 PF01131 DNA topoisomerase NPA28_02440 PF01751 Toprim domain NPA28_02450 PF00990 Diguanylate cyclase, GGDEF domain NPA28_02455 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) NPA28_02465 PF03170 Bacterial cellulose synthase subunit NPA28_02470 PF13520 Amino acid permease NPA28_02475 PF00293 NUDIX domain NPA28_02480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPA28_02480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NPA28_02480 PF00205 Thiamine pyrophosphate enzyme, central domain NPA28_02490 PF01566 Natural resistance-associated macrophage protein NPA28_02495 PF04226 Transglycosylase associated protein NPA28_02500 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) NPA28_02505 PF12787 EcsC protein family NPA28_02510 PF00477 Small hydrophilic plant seed protein NPA28_02510 PF10685 Stress-induced bacterial acidophilic repeat motif NPA28_02515 PF07883 Cupin domain NPA28_02520 PF16291 Domain of unknown function (DUF4937 NPA28_02530 PF05067 Manganese containing catalase NPA28_02535 PF03480 Bacterial extracellular solute-binding protein, family 7 NPA28_02540 PF17203 Single cache domain 3 NPA28_02540 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NPA28_02540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_02545 PF08279 HTH domain NPA28_02545 PF00072 Response regulator receiver domain NPA28_02550 PF00375 Sodium:dicarboxylate symporter family NPA28_02555 PF01594 AI-2E family transporter NPA28_02560 PF00375 Sodium:dicarboxylate symporter family NPA28_02565 PF00005 ABC transporter NPA28_02580 PF02770 Acyl-CoA dehydrogenase, middle domain NPA28_02580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPA28_02580 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NPA28_02585 PF13040 Fur-regulated basic protein B NPA28_02595 PF16916 Dimerisation domain of Zinc Transporter NPA28_02595 PF01545 Cation efflux family NPA28_02600 PF00085 Thioredoxin NPA28_02605 PF07478 D-ala D-ala ligase C-terminus NPA28_02605 PF01820 D-ala D-ala ligase N-terminus NPA28_02610 PF08245 Mur ligase middle domain NPA28_02610 PF02875 Mur ligase family, glutamate ligase domain NPA28_02610 PF01225 Mur ligase family, catalytic domain NPA28_02615 PF00271 Helicase conserved C-terminal domain NPA28_02615 PF00270 DEAD/DEAH box helicase NPA28_02620 PF03703 Bacterial PH domain NPA28_02625 PF03703 Bacterial PH domain NPA28_02630 PF01694 Rhomboid family NPA28_02635 PF01648 4'-phosphopantetheinyl transferase superfamily NPA28_02645 PF01168 Alanine racemase, N-terminal domain NPA28_02645 PF00842 Alanine racemase, C-terminal domain NPA28_02650 PF01402 Ribbon-helix-helix protein, copG family NPA28_02655 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system NPA28_02660 PF01740 STAS domain NPA28_02660 PF08678 Rsbr N terminal NPA28_02665 PF01740 STAS domain NPA28_02670 PF13581 Histidine kinase-like ATPase domain NPA28_02675 PF07228 Stage II sporulation protein E (SpoIIE) NPA28_02675 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain NPA28_02680 PF01740 STAS domain NPA28_02685 PF13581 Histidine kinase-like ATPase domain NPA28_02690 PF04542 Sigma-70 region 2 NPA28_02690 PF04539 Sigma-70 region 3 NPA28_02690 PF04545 Sigma-70, region 4 NPA28_02695 PF07228 Stage II sporulation protein E (SpoIIE) NPA28_02700 PF16921 Tex protein YqgF-like domain NPA28_02700 PF09371 Tex-like protein N-terminal domain NPA28_02700 PF00575 S1 RNA binding domain NPA28_02700 PF17674 HHH domain NPA28_02710 PF17283 SprT-like zinc ribbon domain NPA28_02710 PF10263 SprT-like family NPA28_02755 PF16916 Dimerisation domain of Zinc Transporter NPA28_02755 PF01545 Cation efflux family NPA28_02775 PF02525 Flavodoxin-like fold NPA28_02780 PF01878 EVE domain NPA28_02790 PF01047 MarR family NPA28_02815 PF01381 Helix-turn-helix NPA28_02825 PF00487 Fatty acid desaturase NPA28_02830 PF00313 'Cold-shock' DNA-binding domain NPA28_02835 PF00313 'Cold-shock' DNA-binding domain NPA28_02840 PF02559 CarD-like/TRCF domain NPA28_02845 PF04237 YjbR NPA28_02850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_02870 PF08818 Domain of unknown function (DU1801) NPA28_02885 PF01047 MarR family NPA28_02890 PF00583 Acetyltransferase (GNAT) family NPA28_02895 PF04299 Putative FMN-binding domain NPA28_02900 PF02463 RecF/RecN/SMC N terminal domain NPA28_02910 PF01965 DJ-1/PfpI family NPA28_02920 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPA28_02920 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPA28_02930 PF00583 Acetyltransferase (GNAT) family NPA28_02940 PF01575 MaoC like domain NPA28_02945 PF00892 EamA-like transporter family NPA28_02950 PF00392 Bacterial regulatory proteins, gntR family NPA28_02950 PF00155 Aminotransferase class I and II NPA28_02955 PF12697 Alpha/beta hydrolase family NPA28_02960 PF12746 GNAT acetyltransferase NPA28_02970 PF04239 Protein of unknown function (DUF421) NPA28_02975 PF00085 Thioredoxin NPA28_02980 PF00440 Bacterial regulatory proteins, tetR family NPA28_02985 PF13564 DoxX-like family NPA28_02990 PF00583 Acetyltransferase (GNAT) family NPA28_02995 PF00005 ABC transporter NPA28_02995 PF12848 ABC transporter NPA28_03000 PF00324 Amino acid permease NPA28_03005 PF05163 DinB family NPA28_03010 PF01047 MarR family NPA28_03015 PF03176 MMPL family NPA28_03025 PF00881 Nitroreductase family NPA28_03035 PF07883 Cupin domain NPA28_03035 PF01381 Helix-turn-helix NPA28_03040 PF03591 AzlC protein NPA28_03050 PF07690 Major Facilitator Superfamily NPA28_03055 PF01925 Sulfite exporter TauE/SafE NPA28_03060 PF00392 Bacterial regulatory proteins, gntR family NPA28_03060 PF07729 FCD domain NPA28_03065 PF00704 Glycosyl hydrolases family 18 NPA28_03065 PF01476 LysM domain NPA28_03070 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NPA28_03075 PF11611 Domain of unknown function (DUF4352) NPA28_03075 PF08139 Prokaryotic membrane lipoprotein lipid attachment site NPA28_03080 PF00245 Alkaline phosphatase NPA28_03085 PF16302 Domain of unknown function (DUF4944) NPA28_03095 PF01966 HD domain NPA28_03100 PF07563 Protein of unknown function (DUF1541) NPA28_03105 PF07690 Major Facilitator Superfamily NPA28_03110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPA28_03115 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NPA28_03120 PF02378 Phosphotransferase system, EIIC NPA28_03125 PF00232 Glycosyl hydrolase family 1 NPA28_03130 PF07702 UTRA domain NPA28_03130 PF00392 Bacterial regulatory proteins, gntR family NPA28_03135 PF00480 ROK family NPA28_03140 PF01238 Phosphomannose isomerase type I NPA28_03145 PF02156 Glycosyl hydrolase family 26 NPA28_03190 PF00586 AIR synthase related protein, N-terminal domain NPA28_03190 PF02769 AIR synthase related protein, C-terminal domain NPA28_03195 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NPA28_03200 PF00814 Glycoprotease family NPA28_03205 PF00583 Acetyltransferase (GNAT) family NPA28_03210 PF00814 Glycoprotease family NPA28_03215 PF16326 ABC transporter C-terminal domain NPA28_03215 PF00005 ABC transporter NPA28_03215 PF12848 ABC transporter NPA28_03220 PF01967 MoaC family NPA28_03225 PF02629 CoA binding domain NPA28_03225 PF06971 Putative DNA-binding protein N-terminus NPA28_03230 PF02416 mttA/Hcf106 family NPA28_03235 PF00902 Sec-independent protein translocase protein (TatC) NPA28_03240 PF14146 Domain of unknown function (DUF4305) NPA28_03245 PF02517 CPBP intramembrane metalloprotease NPA28_03250 PF00166 Chaperonin 10 Kd subunit NPA28_03255 PF00118 TCP-1/cpn60 chaperonin family NPA28_03260 PF08924 Domain of unknown function (DUF1906) NPA28_03260 PF01471 Putative peptidoglycan binding domain NPA28_03275 PF00931 NB-ARC domain NPA28_03275 PF13176 Tetratricopeptide repeat NPA28_03280 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_03280 PF00107 Zinc-binding dehydrogenase NPA28_03290 PF00294 pfkB family carbohydrate kinase NPA28_03295 PF07885 Ion channel NPA28_03300 PF00083 Sugar (and other) transporter NPA28_03305 PF00107 Zinc-binding dehydrogenase NPA28_03305 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_03310 PF03330 Lytic transglycolase NPA28_03315 PF07676 WD40-like Beta Propeller Repeat NPA28_03325 PF14169 Cold-inducible protein YdjO NPA28_03330 PF12697 Alpha/beta hydrolase family NPA28_03335 PF13170 Protein of unknown function (DUF4003) NPA28_03340 PF07731 Multicopper oxidase NPA28_03340 PF07732 Multicopper oxidase NPA28_03340 PF00394 Multicopper oxidase NPA28_03345 PF00324 Amino acid permease NPA28_03350 PF16916 Dimerisation domain of Zinc Transporter NPA28_03350 PF01545 Cation efflux family NPA28_03355 PF17863 AAA lid domain NPA28_03355 PF07726 ATPase family associated with various cellular activities (AAA) NPA28_03360 PF01882 Protein of unknown function DUF58 NPA28_03365 PF13559 Domain of unknown function (DUF4129) NPA28_03365 PF01841 Transglutaminase-like superfamily NPA28_03365 PF11992 Domain of unknown function (DUF3488) NPA28_03370 PF02540 NAD synthase NPA28_03370 PF00958 GMP synthase C terminal domain NPA28_03370 PF00117 Glutamine amidotransferase class-I NPA28_03375 PF01555 DNA methylase NPA28_03405 PF00860 Permease family NPA28_03415 PF13076 Fur-regulated basic protein A NPA28_03420 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPA28_03425 PF14044 NETI protein NPA28_03430 PF00731 AIR carboxylase NPA28_03435 PF02222 ATP-grasp domain NPA28_03435 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NPA28_03440 PF10397 Adenylosuccinate lyase C-terminus NPA28_03440 PF00206 Lyase NPA28_03445 PF01259 SAICAR synthetase NPA28_03450 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase NPA28_03460 PF00586 AIR synthase related protein, N-terminal domain NPA28_03460 PF02769 AIR synthase related protein, C-terminal domain NPA28_03460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NPA28_03465 PF00156 Phosphoribosyl transferase domain NPA28_03470 PF02769 AIR synthase related protein, C-terminal domain NPA28_03470 PF00586 AIR synthase related protein, N-terminal domain NPA28_03475 PF00551 Formyl transferase NPA28_03480 PF01808 AICARFT/IMPCHase bienzyme NPA28_03480 PF02142 MGS-like domain NPA28_03485 PF02844 Phosphoribosylglycinamide synthetase, N domain NPA28_03485 PF02843 Phosphoribosylglycinamide synthetase, C domain NPA28_03485 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NPA28_03490 PF01037 Lrp/AsnC ligand binding domain NPA28_03495 PF13520 Amino acid permease NPA28_03500 PF11127 Protein of unknown function (DUF2892) NPA28_03505 PF13382 Adenine deaminase C-terminal domain NPA28_03505 PF01979 Amidohydrolase family NPA28_03510 PF11258 Protein of unknown function (DUF3048) N-terminal domain NPA28_03510 PF17479 Protein of unknown function (DUF3048) C-terminal domain NPA28_03515 PF01371 Trp repressor protein NPA28_03520 PF01645 Conserved region in glutamate synthase NPA28_03525 PF01884 PcrB family NPA28_03530 PF13361 UvrD-like helicase C-terminal domain NPA28_03530 PF00580 UvrD/REP helicase N-terminal domain NPA28_03535 PF12826 Helix-hairpin-helix motif NPA28_03535 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NPA28_03535 PF01653 NAD-dependent DNA ligase adenylation domain NPA28_03535 PF00533 BRCA1 C Terminus (BRCT) domain NPA28_03535 PF03120 NAD-dependent DNA ligase OB-fold domain NPA28_03540 PF07537 CamS sex pheromone cAM373 precursor NPA28_03545 PF07690 Major Facilitator Superfamily NPA28_03555 PF01636 Phosphotransferase enzyme family NPA28_03560 PF02308 MgtC family NPA28_03565 PF00474 Sodium:solute symporter family NPA28_03570 PF02686 Glu-tRNAGln amidotransferase C subunit NPA28_03575 PF01425 Amidase NPA28_03580 PF02934 GatB/GatE catalytic domain NPA28_03580 PF02637 GatB domain NPA28_03590 PF00873 AcrB/AcrD/AcrF family NPA28_03595 PF00781 Diacylglycerol kinase catalytic domain NPA28_03600 PF05958 tRNA (Uracil-5-)-methyltransferase NPA28_03600 PF01938 TRAM domain NPA28_03605 PF00486 Transcriptional regulatory protein, C terminal NPA28_03605 PF00072 Response regulator receiver domain NPA28_03610 PF00005 ABC transporter NPA28_03620 PF00512 His Kinase A (phospho-acceptor) domain NPA28_03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_03620 PF00989 PAS fold NPA28_03625 PF00378 Enoyl-CoA hydratase/isomerase NPA28_03630 PF00378 Enoyl-CoA hydratase/isomerase NPA28_03635 PF00550 Phosphopantetheine attachment site NPA28_03640 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03640 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03650 PF00698 Acyl transferase domain NPA28_03650 PF14765 Polyketide synthase dehydratase NPA28_03650 PF00550 Phosphopantetheine attachment site NPA28_03650 PF08659 KR domain NPA28_03650 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03650 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03650 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03650 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_03655 PF00005 ABC transporter NPA28_03670 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03670 PF08659 KR domain NPA28_03670 PF00668 Condensation domain NPA28_03670 PF13193 AMP-binding enzyme C-terminal domain NPA28_03670 PF00501 AMP-binding enzyme NPA28_03670 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03670 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03670 PF00550 Phosphopantetheine attachment site NPA28_03670 PF14765 Polyketide synthase dehydratase NPA28_03675 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03675 PF00668 Condensation domain NPA28_03675 PF13193 AMP-binding enzyme C-terminal domain NPA28_03675 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03675 PF08659 KR domain NPA28_03675 PF00501 AMP-binding enzyme NPA28_03675 PF00550 Phosphopantetheine attachment site NPA28_03675 PF14765 Polyketide synthase dehydratase NPA28_03675 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03680 PF14765 Polyketide synthase dehydratase NPA28_03680 PF00550 Phosphopantetheine attachment site NPA28_03680 PF08242 Methyltransferase domain NPA28_03680 PF08659 KR domain NPA28_03680 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03680 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03680 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03685 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03685 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03685 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03685 PF08659 KR domain NPA28_03685 PF08242 Methyltransferase domain NPA28_03685 PF00550 Phosphopantetheine attachment site NPA28_03685 PF14765 Polyketide synthase dehydratase NPA28_03690 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03690 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03690 PF08659 KR domain NPA28_03690 PF00550 Phosphopantetheine attachment site NPA28_03690 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03690 PF14765 Polyketide synthase dehydratase NPA28_03695 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03695 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03695 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03695 PF08659 KR domain NPA28_03695 PF08242 Methyltransferase domain NPA28_03695 PF00550 Phosphopantetheine attachment site NPA28_03695 PF14765 Polyketide synthase dehydratase NPA28_03705 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03705 PF00550 Phosphopantetheine attachment site NPA28_03705 PF08242 Methyltransferase domain NPA28_03705 PF14765 Polyketide synthase dehydratase NPA28_03705 PF08659 KR domain NPA28_03705 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03705 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03710 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03710 PF08659 KR domain NPA28_03710 PF08242 Methyltransferase domain NPA28_03710 PF00550 Phosphopantetheine attachment site NPA28_03710 PF14765 Polyketide synthase dehydratase NPA28_03710 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03710 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03715 PF13193 AMP-binding enzyme C-terminal domain NPA28_03715 PF00668 Condensation domain NPA28_03715 PF00550 Phosphopantetheine attachment site NPA28_03715 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03715 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03715 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03715 PF08659 KR domain NPA28_03715 PF14765 Polyketide synthase dehydratase NPA28_03715 PF00501 AMP-binding enzyme NPA28_03720 PF14765 Polyketide synthase dehydratase NPA28_03720 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_03720 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_03720 PF08659 KR domain NPA28_03720 PF00550 Phosphopantetheine attachment site NPA28_03720 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_03725 PF00698 Acyl transferase domain NPA28_03725 PF03060 Nitronate monooxygenase NPA28_03730 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal NPA28_03730 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal NPA28_03745 PF13176 Tetratricopeptide repeat NPA28_03745 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_03755 PF01709 Transcriptional regulator NPA28_03765 PF00440 Bacterial regulatory proteins, tetR family NPA28_03770 PF12680 SnoaL-like domain NPA28_03790 PF11007 Spore coat associated protein JA (CotJA) NPA28_03795 PF12652 CotJB protein NPA28_03800 PF05067 Manganese containing catalase NPA28_03805 PF00583 Acetyltransferase (GNAT) family NPA28_03810 PF14150 YesK-like protein NPA28_03815 PF04854 Protein of unknown function, DUF624 NPA28_03820 PF00672 HAMP domain NPA28_03820 PF02743 Cache domain NPA28_03820 PF06580 Histidine kinase NPA28_03820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_03825 PF00072 Response regulator receiver domain NPA28_03825 PF12833 Helix-turn-helix domain NPA28_03830 PF13416 Bacterial extracellular solute-binding protein NPA28_03835 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_03840 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_03845 PF07470 Glycosyl Hydrolase Family 88 NPA28_03850 PF12833 Helix-turn-helix domain NPA28_03855 PF13472 GDSL-like Lipase/Acylhydrolase family NPA28_03860 PF09224 Domain of unknown function (DUF1961) NPA28_03865 PF04854 Protein of unknown function, DUF624 NPA28_03870 PF18370 Rhamnogalacturonan I lyases beta-sheet domain NPA28_03875 PF18370 Rhamnogalacturonan I lyases beta-sheet domain NPA28_03875 PF01839 FG-GAP repeat NPA28_03880 PF00248 Aldo/keto reductase family NPA28_03885 PF00657 GDSL-like Lipase/Acylhydrolase NPA28_03890 PF02449 Beta-galactosidase NPA28_03890 PF08532 Beta-galactosidase trimerisation domain NPA28_03890 PF08533 Beta-galactosidase C-terminal domain NPA28_03900 PF01547 Bacterial extracellular solute-binding protein NPA28_03905 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_03910 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_03915 PF02056 Family 4 glycosyl hydrolase NPA28_03915 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPA28_03920 PF04239 Protein of unknown function (DUF421) NPA28_03925 PF03992 Antibiotic biosynthesis monooxygenase NPA28_03930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_03940 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain NPA28_03940 PF01740 STAS domain NPA28_03945 PF10055 Uncharacterized small protein (DUF2292) NPA28_03950 PF01027 Inhibitor of apoptosis-promoting Bax1 NPA28_03955 PF00892 EamA-like transporter family NPA28_03960 PF01047 MarR family NPA28_03965 PF01494 FAD binding domain NPA28_03975 PF13037 Domain of unknown function (DUF3898) NPA28_03975 PF13039 Protein of unknown function (DUF3900) NPA28_03980 PF00667 FAD binding domain NPA28_03980 PF00258 Flavodoxin NPA28_03980 PF00067 Cytochrome P450 NPA28_03980 PF00175 Oxidoreductase NAD-binding domain NPA28_03985 PF00884 Sulfatase NPA28_03990 PF00483 Nucleotidyl transferase NPA28_03995 PF16363 GDP-mannose 4,6 dehydratase NPA28_04000 PF03407 Nucleotide-diphospho-sugar transferase NPA28_04005 PF00535 Glycosyl transferase family 2 NPA28_04010 PF03407 Nucleotide-diphospho-sugar transferase NPA28_04015 PF07690 Major Facilitator Superfamily NPA28_04020 PF13419 Haloacid dehalogenase-like hydrolase NPA28_04025 PF13520 Amino acid permease NPA28_04030 PF00171 Aldehyde dehydrogenase family NPA28_04035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_04040 PF12848 ABC transporter NPA28_04040 PF16326 ABC transporter C-terminal domain NPA28_04040 PF00005 ABC transporter NPA28_04045 PF10787 Uncharacterised protein from bacillus cereus group NPA28_04050 PF13411 MerR HTH family regulatory protein NPA28_04055 PF07690 Major Facilitator Superfamily NPA28_04065 PF00005 ABC transporter NPA28_04065 PF12848 ABC transporter NPA28_04070 PF00270 DEAD/DEAH box helicase NPA28_04070 PF00271 Helicase conserved C-terminal domain NPA28_04075 PF00583 Acetyltransferase (GNAT) family NPA28_04080 PF16884 N-terminal domain of oxidoreductase NPA28_04080 PF00107 Zinc-binding dehydrogenase NPA28_04085 PF00005 ABC transporter NPA28_04090 PF01032 FecCD transport family NPA28_04095 PF01032 FecCD transport family NPA28_04100 PF01497 Periplasmic binding protein NPA28_04105 PF11486 Protein of unknown function (DUF3212) NPA28_04110 PF11181 Heat induced stress protein YflT NPA28_04115 PF00544 Pectate lyase NPA28_04120 PF00939 Sodium:sulfate symporter transmembrane region NPA28_04130 PF12431 Transcriptional regulator NPA28_04130 PF08279 HTH domain NPA28_04130 PF00072 Response regulator receiver domain NPA28_04135 PF03401 Tripartite tricarboxylate transporter family receptor NPA28_04140 PF03600 Citrate transporter NPA28_04145 PF00753 Metallo-beta-lactamase superfamily NPA28_04150 PF02898 Nitric oxide synthase, oxygenase domain NPA28_04155 PF00708 Acylphosphatase NPA28_04160 PF03475 3-alpha domain NPA28_04160 PF03473 MOSC domain NPA28_04165 PF11121 Protein of unknown function (DUF2639) NPA28_04175 PF11588 Protein of unknown function (DUF3243) NPA28_04180 PF00557 Metallopeptidase family M24 NPA28_04185 PF02378 Phosphotransferase system, EIIC NPA28_04185 PF00367 phosphotransferase system, EIIB NPA28_04190 PF00884 Sulfatase NPA28_04195 PF09350 Domain of unknown function (DUF1992) NPA28_04200 PF01235 Sodium:alanine symporter family NPA28_04205 PF03845 Spore germination protein NPA28_04215 PF05504 Spore germination B3/ GerAC like, C-terminal NPA28_04220 PF03323 Bacillus/Clostridium GerA spore germination protein NPA28_04225 PF02378 Phosphotransferase system, EIIC NPA28_04225 PF00367 phosphotransferase system, EIIB NPA28_04230 PF16657 Maltogenic Amylase, C-terminal domain NPA28_04230 PF00128 Alpha amylase, catalytic domain NPA28_04235 PF07702 UTRA domain NPA28_04235 PF00392 Bacterial regulatory proteins, gntR family NPA28_04240 PF00881 Nitroreductase family NPA28_04245 PF02872 5'-nucleotidase, C-terminal domain NPA28_04245 PF00149 Calcineurin-like phosphoesterase NPA28_04250 PF01965 DJ-1/PfpI family NPA28_04255 PF07690 Major Facilitator Superfamily NPA28_04260 PF06569 Protein of unknown function (DUF1128) NPA28_04265 PF01451 Low molecular weight phosphotyrosine protein phosphatase NPA28_04275 PF03631 Virulence factor BrkB NPA28_04280 PF07690 Major Facilitator Superfamily NPA28_04285 PF01699 Sodium/calcium exchanger protein NPA28_04290 PF14167 YfkD-like protein NPA28_04295 PF00924 Mechanosensitive ion channel NPA28_04300 PF08756 YfkB-like domain NPA28_04300 PF04055 Radical SAM superfamily NPA28_04310 PF01522 Polysaccharide deacetylase NPA28_04315 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NPA28_04315 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NPA28_04320 PF01544 CorA-like Mg2+ transporter protein NPA28_04325 PF00730 HhH-GPD superfamily base excision DNA repair protein NPA28_04330 PF05958 tRNA (Uracil-5-)-methyltransferase NPA28_04330 PF01938 TRAM domain NPA28_04335 PF01207 Dihydrouridine synthase (Dus) NPA28_04340 PF13302 Acetyltransferase (GNAT) domain NPA28_04355 PF00676 Dehydrogenase E1 component NPA28_04360 PF02779 Transketolase, pyrimidine binding domain NPA28_04360 PF02780 Transketolase, C-terminal domain NPA28_04365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NPA28_04365 PF00364 Biotin-requiring enzyme NPA28_04365 PF02817 e3 binding domain NPA28_04370 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_04370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPA28_04375 PF01590 GAF domain NPA28_04375 PF02954 Bacterial regulatory protein, Fis family NPA28_04375 PF00158 Sigma-54 interaction domain NPA28_04380 PF08141 Small acid-soluble spore protein H family NPA28_04390 PF17353 Family of unknown function (DUF5381) NPA28_04395 PF17353 Family of unknown function (DUF5381) NPA28_04410 PF06013 Proteins of 100 residues with WXG NPA28_04415 PF02056 Family 4 glycosyl hydrolase NPA28_04415 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPA28_04420 PF01380 SIS domain NPA28_04420 PF01418 Helix-turn-helix domain, rpiR family NPA28_04425 PF00367 phosphotransferase system, EIIB NPA28_04425 PF02378 Phosphotransferase system, EIIC NPA28_04430 PF00005 ABC transporter NPA28_04430 PF00664 ABC transporter transmembrane region NPA28_04435 PF00005 ABC transporter NPA28_04435 PF00664 ABC transporter transmembrane region NPA28_04440 PF07681 DoxX NPA28_04445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_04450 PF07730 Histidine kinase NPA28_04455 PF00196 Bacterial regulatory proteins, luxR family NPA28_04455 PF00072 Response regulator receiver domain NPA28_04460 PF00005 ABC transporter NPA28_04480 PF03551 Transcriptional regulator PadR-like family NPA28_04480 PF10400 Virulence activator alpha C-term NPA28_04485 PF01674 Lipase (class 2) NPA28_04490 PF01757 Acyltransferase family NPA28_04495 PF12867 DinB superfamily NPA28_04500 PF07690 Major Facilitator Superfamily NPA28_04505 PF01047 MarR family NPA28_04510 PF09924 Uncharacterised conserved protein (DUF2156) NPA28_04510 PF03706 Lysylphosphatidylglycerol synthase TM region NPA28_04515 PF01497 Periplasmic binding protein NPA28_04520 PF01032 FecCD transport family NPA28_04525 PF01032 FecCD transport family NPA28_04530 PF02567 Phenazine biosynthesis-like protein NPA28_04535 PF00881 Nitroreductase family NPA28_04540 PF14151 YfhD-like protein NPA28_04545 PF14152 YfhE-like protein NPA28_04550 PF01370 NAD dependent epimerase/dehydratase family NPA28_04550 PF08338 Domain of unknown function (DUF1731) NPA28_04555 PF02631 RecX family NPA28_04560 PF08838 Protein of unknown function (DUF1811) NPA28_04565 PF07690 Major Facilitator Superfamily NPA28_04570 PF08176 Small acid-soluble spore protein K family NPA28_04575 PF14043 WVELL protein NPA28_04585 PF01381 Helix-turn-helix NPA28_04590 PF08239 Bacterial SH3 domain NPA28_04595 PF13630 SdpI/YhfL protein family NPA28_04600 PF00561 alpha/beta hydrolase fold NPA28_04605 PF00535 Glycosyl transferase family 2 NPA28_04610 PF09586 Bacterial membrane protein YfhO NPA28_04615 PF04307 LexA-binding, inner membrane-associated putative hydrolase NPA28_04620 PF00730 HhH-GPD superfamily base excision DNA repair protein NPA28_04620 PF14815 NUDIX domain NPA28_04635 PF04259 Small, acid-soluble spore protein, gamma-type NPA28_04640 PF14182 YgaB-like protein NPA28_04645 PF04167 Protein of unknown function (DUF402) NPA28_04650 PF00005 ABC transporter NPA28_04650 PF00664 ABC transporter transmembrane region NPA28_04655 PF06081 Aromatic acid exporter family member 1 NPA28_04660 PF00202 Aminotransferase class-III NPA28_04665 PF00578 AhpC/TSA family NPA28_04670 PF01475 Ferric uptake regulator family NPA28_04675 PF11023 Zinc-ribbon containing domain NPA28_04680 PF14540 Nucleotidyltransferase-like NPA28_04680 PF18576 Helix-turn-helix domain NPA28_04780 PF07070 SpoOM protein NPA28_04790 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_04790 PF13823 Alcohol dehydrogenase GroES-associated NPA28_04790 PF00107 Zinc-binding dehydrogenase NPA28_04795 PF07875 Coat F domain NPA28_04810 PF13667 ThiC-associated domain NPA28_04810 PF01964 Radical SAM ThiC family NPA28_04815 PF13040 Fur-regulated basic protein B NPA28_04820 PF06628 Catalase-related immune-responsive NPA28_04820 PF00199 Catalase NPA28_04825 PF00005 ABC transporter NPA28_04830 PF09084 NMT1/THI5 like NPA28_04835 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_04840 PF00296 Luciferase-like monooxygenase NPA28_04850 PF00253 Ribosomal protein S14p/S29e NPA28_04860 PF01381 Helix-turn-helix NPA28_04875 PF08331 Domain of unknown function (DUF1730) NPA28_04880 PF12671 Putative amidase domain NPA28_04885 PF00588 SpoU rRNA Methylase family NPA28_04890 PF13171 Protein of unknown function (DUF4004) NPA28_04895 PF04519 Polymer-forming cytoskeletal NPA28_04905 PF08298 PrkA AAA domain NPA28_04905 PF06798 PrkA serine protein kinase C-terminal domain NPA28_04910 PF04285 Protein of unknown function (DUF444) NPA28_04915 PF01047 MarR family NPA28_04925 PF07690 Major Facilitator Superfamily NPA28_04930 PF03358 NADPH-dependent FMN reductase NPA28_04945 PF00392 Bacterial regulatory proteins, gntR family NPA28_04950 PF00005 ABC transporter NPA28_04955 PF00005 ABC transporter NPA28_04960 PF12679 ABC-2 family transporter protein NPA28_04965 PF00313 'Cold-shock' DNA-binding domain NPA28_04970 PF03180 NLPA lipoprotein NPA28_04975 PF07694 5TMR of 5TMR-LYT NPA28_04975 PF00990 Diguanylate cyclase, GGDEF domain NPA28_04980 PF00375 Sodium:dicarboxylate symporter family NPA28_04985 PF04740 LXG domain of WXG superfamily NPA28_04985 PF14449 Pre-toxin TG NPA28_04985 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues NPA28_05015 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NPA28_05025 PF07875 Coat F domain NPA28_05030 PF02872 5'-nucleotidase, C-terminal domain NPA28_05030 PF00746 LPXTG cell wall anchor motif NPA28_05030 PF00149 Calcineurin-like phosphoesterase NPA28_05030 PF00565 Staphylococcal nuclease homologue NPA28_05035 PF04203 Sortase domain NPA28_05040 PF01479 S4 domain NPA28_05040 PF00849 RNA pseudouridylate synthase NPA28_05045 PF17326 Family of unknown function (DUF5365) NPA28_05050 PF00571 CBS domain NPA28_05055 PF13419 Haloacid dehalogenase-like hydrolase NPA28_05060 PF00583 Acetyltransferase (GNAT) family NPA28_05060 PF00795 Carbon-nitrogen hydrolase NPA28_05070 PF00202 Aminotransferase class-III NPA28_05075 PF04309 Glycerol-3-phosphate responsive antiterminator NPA28_05080 PF00230 Major intrinsic protein NPA28_05085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPA28_05085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPA28_05090 PF01266 FAD dependent oxidoreductase NPA28_05090 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NPA28_05095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NPA28_05095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NPA28_05095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NPA28_05095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NPA28_05100 PF13185 GAF domain NPA28_05100 PF07730 Histidine kinase NPA28_05105 PF00196 Bacterial regulatory proteins, luxR family NPA28_05105 PF00072 Response regulator receiver domain NPA28_05110 PF03358 NADPH-dependent FMN reductase NPA28_05115 PF14148 YhdB-like protein NPA28_05120 PF13028 Protein of unknown function (DUF3889) NPA28_05125 PF00877 NlpC/P60 family NPA28_05125 PF01476 LysM domain NPA28_05130 PF02082 Transcriptional regulator NPA28_05140 PF04293 SpoVR like protein NPA28_05150 PF00245 Alkaline phosphatase NPA28_05155 PF00877 NlpC/P60 family NPA28_05155 PF01476 LysM domain NPA28_05160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_05160 PF03466 LysR substrate binding domain NPA28_05165 PF00285 Citrate synthase, C-terminal domain NPA28_05175 PF13520 Amino acid permease NPA28_05180 PF00209 Sodium:neurotransmitter symporter family NPA28_05185 PF00392 Bacterial regulatory proteins, gntR family NPA28_05185 PF00155 Aminotransferase class I and II NPA28_05190 PF00583 Acetyltransferase (GNAT) family NPA28_05195 PF17453 Sigma-M inhibitor NPA28_05200 PF13791 Sigma factor regulator C-terminal NPA28_05200 PF13800 Sigma factor regulator N-terminal NPA28_05205 PF08281 Sigma-70, region 4 NPA28_05205 PF04542 Sigma-70 region 2 NPA28_05210 PF00248 Aldo/keto reductase family NPA28_05215 PF01553 Acyltransferase NPA28_05220 PF01266 FAD dependent oxidoreductase NPA28_05225 PF01370 NAD dependent epimerase/dehydratase family NPA28_05230 PF00571 CBS domain NPA28_05230 PF03471 Transporter associated domain NPA28_05230 PF01595 Cyclin M transmembrane N-terminal domain NPA28_05235 PF13411 MerR HTH family regulatory protein NPA28_05240 PF00155 Aminotransferase class I and II NPA28_05245 PF00571 CBS domain NPA28_05245 PF03471 Transporter associated domain NPA28_05245 PF01595 Cyclin M transmembrane N-terminal domain NPA28_05250 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NPA28_05255 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NPA28_05260 PF03009 Glycerophosphoryl diester phosphodiesterase family NPA28_05265 PF17444 Uncharacterized YhdX-like NPA28_05270 PF00924 Mechanosensitive ion channel NPA28_05275 PF02146 Sir2 family NPA28_05280 PF01522 Polysaccharide deacetylase NPA28_05285 PF01063 Amino-transferase class IV NPA28_05290 PF03553 Na+/H+ antiporter family NPA28_05295 PF00582 Universal stress protein family NPA28_05300 PF00664 ABC transporter transmembrane region NPA28_05300 PF00005 ABC transporter NPA28_05305 PF00005 ABC transporter NPA28_05305 PF00664 ABC transporter transmembrane region NPA28_05310 PF13460 NAD(P)H-binding NPA28_05320 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPA28_05325 PF17277 Family of unknown function (DUF5342) NPA28_05330 PF14398 YheC/D like ATP-grasp NPA28_05335 PF14398 YheC/D like ATP-grasp NPA28_05340 PF04286 Protein of unknown function (DUF445) NPA28_05345 PF06133 Control of competence regulator ComK, YlbF/YmcA NPA28_05350 PF08713 DNA alkylation repair enzyme NPA28_05360 PF04055 Radical SAM superfamily NPA28_05365 PF00999 Sodium/hydrogen exchanger family NPA28_05370 PF02080 TrkA-C domain NPA28_05380 PF00378 Enoyl-CoA hydratase/isomerase NPA28_05385 PF14120 YhzD-like protein NPA28_05390 PF00005 ABC transporter NPA28_05390 PF13732 Domain of unknown function (DUF4162) NPA28_05400 PF00149 Calcineurin-like phosphoesterase NPA28_05405 PF13514 AAA domain NPA28_05410 PF01966 HD domain NPA28_05415 PF14147 Sporulation protein YhaL NPA28_05425 PF09680 Family of unknown function NPA28_05430 PF09680 Family of unknown function NPA28_05440 PF11667 Putative zincin peptidase NPA28_05445 PF08963 Protein of unknown function (DUF1878) NPA28_05450 PF01047 MarR family NPA28_05455 PF12732 YtxH-like protein NPA28_05465 PF17099 Tryptophan transporter TrpP NPA28_05470 PF00266 Aminotransferase class-V NPA28_05475 PF01230 HIT domain NPA28_05480 PF00005 ABC transporter NPA28_05485 PF05975 Bacterial ABC transporter protein EcsB NPA28_05490 PF12787 EcsC protein family NPA28_05495 PF07687 Peptidase dimerisation domain NPA28_05495 PF01546 Peptidase family M20/M25/M40 NPA28_05505 PF03992 Antibiotic biosynthesis monooxygenase NPA28_05510 PF00912 Transglycosylase NPA28_05510 PF00905 Penicillin binding protein transpeptidase domain NPA28_05515 PF01208 Uroporphyrinogen decarboxylase (URO-D) NPA28_05520 PF00762 Ferrochelatase NPA28_05525 PF01593 Flavin containing amine oxidoreductase NPA28_05530 PF17932 Tetracyclin repressor-like, C-terminal domain NPA28_05530 PF00440 Bacterial regulatory proteins, tetR family NPA28_05540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPA28_05540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPA28_05545 PF10086 YhfC intramembrane metalloprotease NPA28_05555 PF05343 M42 glutamyl aminopeptidase NPA28_05560 PF04266 ASCH domain NPA28_05565 PF00375 Sodium:dicarboxylate symporter family NPA28_05570 PF14149 YhfH-like protein NPA28_05575 PF12706 Beta-lactamase superfamily domain NPA28_05580 PF03099 Biotin/lipoate A/B protein ligase family NPA28_05580 PF10437 Bacterial lipoate protein ligase C-terminus NPA28_05585 PF13460 NAD(P)H-binding NPA28_05590 PF13193 AMP-binding enzyme C-terminal domain NPA28_05590 PF00501 AMP-binding enzyme NPA28_05600 PF16491 CAAX prenyl protease N-terminal, five membrane helices NPA28_05600 PF01435 Peptidase family M48 NPA28_05605 PF05922 Peptidase inhibitor I9 NPA28_05605 PF00082 Subtilase family NPA28_05610 PF00583 Acetyltransferase (GNAT) family NPA28_05615 PF00107 Zinc-binding dehydrogenase NPA28_05615 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_05620 PF01497 Periplasmic binding protein NPA28_05625 PF00300 Histidine phosphatase superfamily (branch 1) NPA28_05630 PF02803 Thiolase, C-terminal domain NPA28_05630 PF00108 Thiolase, N-terminal domain NPA28_05635 PF00501 AMP-binding enzyme NPA28_05635 PF13193 AMP-binding enzyme C-terminal domain NPA28_05640 PF02632 BioY family NPA28_05645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_05650 PF01266 FAD dependent oxidoreductase NPA28_05650 PF00355 Rieske [2Fe-2S] domain NPA28_05660 PF08858 IDEAL domain NPA28_05665 PF06338 ComK protein NPA28_05675 PF05901 Excalibur calcium-binding domain NPA28_05680 PF00474 Sodium:solute symporter family NPA28_05685 PF11755 Protein of unknown function (DUF3311) NPA28_05695 PF09335 SNARE associated Golgi protein NPA28_05700 PF10502 Signal peptidase, peptidase S26 NPA28_05705 PF01494 FAD binding domain NPA28_05710 PF01047 MarR family NPA28_05720 PF07690 Major Facilitator Superfamily NPA28_05725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPA28_05725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPA28_05730 PF05116 Sucrose-6F-phosphate phosphohydrolase NPA28_05735 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPA28_05740 PF00356 Bacterial regulatory proteins, lacI family NPA28_05745 PF05145 Transition state regulatory protein AbrB NPA28_05755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPA28_05755 PF12793 Sugar transport-related sRNA regulator N-term NPA28_05760 PF03860 Domain of Unknown Function (DUF326) NPA28_05765 PF02915 Rubrerythrin NPA28_05770 PF13361 UvrD-like helicase C-terminal domain NPA28_05770 PF12705 PD-(D/E)XK nuclease superfamily NPA28_05775 PF12705 PD-(D/E)XK nuclease superfamily NPA28_05775 PF00580 UvrD/REP helicase N-terminal domain NPA28_05775 PF13361 UvrD-like helicase C-terminal domain NPA28_05780 PF00149 Calcineurin-like phosphoesterase NPA28_05780 PF12320 Type 5 capsule protein repressor C-terminal domain NPA28_05785 PF13476 AAA domain NPA28_05795 PF10676 Spore germination protein gerPA/gerPF NPA28_05800 PF10970 Spore germination protein GerPE NPA28_05810 PF10737 Spore germination protein GerPC NPA28_05815 PF10803 Spore germination GerPB NPA28_05820 PF10676 Spore germination protein gerPA/gerPF NPA28_05825 PF09388 Spo0E like sporulation regulatory protein NPA28_05830 PF08757 CotH kinase protein NPA28_05835 PF01557 Fumarylacetoacetate (FAA) hydrolase family NPA28_05840 PF07457 Protein of unknown function (DUF1516) NPA28_05845 PF17936 Bacterial Ig domain NPA28_05845 PF00082 Subtilase family NPA28_05850 PF10949 Protein of unknown function (DUF2777) NPA28_05855 PF13537 Glutamine amidotransferase domain NPA28_05855 PF00733 Asparagine synthase NPA28_05860 PF05163 DinB family NPA28_05870 PF01554 MatE NPA28_05875 PF12833 Helix-turn-helix domain NPA28_05875 PF02311 AraC-like ligand binding domain NPA28_05880 PF00356 Bacterial regulatory proteins, lacI family NPA28_05885 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPA28_05885 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPA28_05890 PF05163 DinB family NPA28_05895 PF01810 LysE type translocator NPA28_05900 PF00392 Bacterial regulatory proteins, gntR family NPA28_05900 PF00155 Aminotransferase class I and II NPA28_05905 PF13599 Pentapeptide repeats (9 copies) NPA28_05910 PF00561 alpha/beta hydrolase fold NPA28_05910 PF08386 TAP-like protein NPA28_05920 PF01747 ATP-sulfurylase NPA28_05920 PF14306 PUA-like domain NPA28_05925 PF01507 Phosphoadenosine phosphosulfate reductase family NPA28_05930 PF04029 2-phosphosulpholactate phosphatase NPA28_05935 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) NPA28_05940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPA28_05945 PF13378 Enolase C-terminal domain-like NPA28_05945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NPA28_05950 PF07690 Major Facilitator Superfamily NPA28_05960 PF13673 Acetyltransferase (GNAT) domain NPA28_05965 PF02219 Methylenetetrahydrofolate reductase NPA28_05965 PF02574 Homocysteine S-methyltransferase NPA28_05970 PF04461 Protein of unknown function (DUF520) NPA28_05975 PF17783 CvfB-like winged helix domain NPA28_05975 PF13509 S1 domain NPA28_05990 PF17418 Sporulation delaying protein SdpA NPA28_05995 PF03551 Transcriptional regulator PadR-like family NPA28_06005 PF12650 Domain of unknown function (DUF3784) NPA28_06010 PF07504 Fungalysin/Thermolysin Propeptide Motif NPA28_06010 PF03413 Peptidase propeptide and YPEB domain NPA28_06010 PF01447 Thermolysin metallopeptidase, catalytic domain NPA28_06010 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPA28_06015 PF02645 Uncharacterised protein, DegV family COG1307 NPA28_06020 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPA28_06020 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPA28_06025 PF12690 Intracellular proteinase inhibitor NPA28_06030 PF12758 Protein of unknown function (DUF3813) NPA28_06045 PF00326 Prolyl oligopeptidase family NPA28_06050 PF01883 Iron-sulfur cluster assembly protein NPA28_06060 PF01565 FAD binding domain NPA28_06065 PF07690 Major Facilitator Superfamily NPA28_06070 PF01118 Semialdehyde dehydrogenase, NAD binding domain NPA28_06070 PF02774 Semialdehyde dehydrogenase, dimerisation domain NPA28_06075 PF01960 ArgJ family NPA28_06080 PF00696 Amino acid kinase family NPA28_06085 PF00202 Aminotransferase class-III NPA28_06090 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NPA28_06090 PF00117 Glutamine amidotransferase class-I NPA28_06095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPA28_06095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NPA28_06100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPA28_06100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPA28_06105 PF14168 YjzC-like protein NPA28_06110 PF11151 Protein of unknown function (DUF2929) NPA28_06125 PF02608 ABC transporter substrate-binding protein PnrA-like NPA28_06130 PF10815 ComZ NPA28_06140 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NPA28_06140 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NPA28_06145 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_06145 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_06150 PF10026 Predicted Zn-dependent protease (DUF2268) NPA28_06155 PF00005 ABC transporter NPA28_06155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPA28_06160 PF00005 ABC transporter NPA28_06160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPA28_06165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPA28_06170 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_06175 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_06175 PF12911 N-terminal TM domain of oligopeptide transport permease C NPA28_06180 PF12227 Protein of unknown function (DUF3603) NPA28_06185 PF00579 tRNA synthetases class I (W and Y) NPA28_06190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPA28_06195 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_06200 PF12911 N-terminal TM domain of oligopeptide transport permease C NPA28_06200 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_06205 PF00005 ABC transporter NPA28_06205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPA28_06210 PF00005 ABC transporter NPA28_06210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPA28_06215 PF07690 Major Facilitator Superfamily NPA28_06220 PF13508 Acetyltransferase (GNAT) domain NPA28_06225 PF03960 ArsC family NPA28_06230 PF03741 Integral membrane protein TerC family NPA28_06240 PF05389 Negative regulator of genetic competence (MecA) NPA28_06245 PF06054 Competence protein CoiA-like family NPA28_06250 PF01432 Peptidase family M3 NPA28_06250 PF08439 Oligopeptidase F NPA28_06265 PF01152 Bacterial-like globin NPA28_06270 PF01464 Transglycosylase SLT domain NPA28_06275 PF01928 CYTH domain NPA28_06285 PF04607 Region found in RelA / SpoT proteins NPA28_06290 PF01513 ATP-NAD kinase NPA28_06295 PF00849 RNA pseudouridylate synthase NPA28_06300 PF00149 Calcineurin-like phosphoesterase NPA28_06305 PF00999 Sodium/hydrogen exchanger family NPA28_06305 PF02080 TrkA-C domain NPA28_06305 PF02254 TrkA-N domain NPA28_06310 PF03070 TENA/THI-4/PQQC family NPA28_06315 PF02581 Thiamine monophosphate synthase NPA28_06320 PF01266 FAD dependent oxidoreductase NPA28_06325 PF02597 ThiS family NPA28_06330 PF05690 Thiazole biosynthesis protein ThiG NPA28_06335 PF00899 ThiF family NPA28_06340 PF08543 Phosphomethylpyrimidine kinase NPA28_06350 PF14153 Spore coat protein CotO NPA28_06355 PF10612 Spore coat protein Z NPA28_06360 PF10612 Spore coat protein Z NPA28_06365 PF07552 Spore Coat Protein X and V domain NPA28_06375 PF07552 Spore Coat Protein X and V domain NPA28_06380 PF07098 Protein of unknown function (DUF1360) NPA28_06395 PF14069 Stage VI sporulation protein F NPA28_06400 PF00580 UvrD/REP helicase N-terminal domain NPA28_06400 PF13361 UvrD-like helicase C-terminal domain NPA28_06410 PF13673 Acetyltransferase (GNAT) domain NPA28_06420 PF00756 Putative esterase NPA28_06425 PF01053 Cys/Met metabolism PLP-dependent enzyme NPA28_06430 PF01053 Cys/Met metabolism PLP-dependent enzyme NPA28_06435 PF13302 Acetyltransferase (GNAT) domain NPA28_06440 PF05684 Protein of unknown function (DUF819) NPA28_06450 PF00589 Phage integrase family NPA28_06450 PF02899 Phage integrase, N-terminal SAM-like domain NPA28_06455 PF06114 IrrE N-terminal-like domain NPA28_06465 PF01381 Helix-turn-helix NPA28_06480 PF03374 Phage antirepressor protein KilAC domain NPA28_06480 PF09669 Phage regulatory protein Rha (Phage_pRha) NPA28_06485 PF01381 Helix-turn-helix NPA28_06490 PF17448 Uncharacterized YqaH-like NPA28_06495 PF09466 Hypothetical protein Yqai NPA28_06515 PF07261 Replication initiation and membrane attachment NPA28_06520 PF01695 IstB-like ATP binding protein NPA28_06530 PF05866 Endodeoxyribonuclease RusA NPA28_06535 PF17356 Phage-like element PBSX protein XtrA NPA28_06565 PF08281 Sigma-70, region 4 NPA28_06590 PF10668 Phage terminase small subunit NPA28_06660 PF01464 Transglycosylase SLT domain NPA28_06665 PF00877 NlpC/P60 family NPA28_06665 PF01476 LysM domain NPA28_06715 PF03009 Glycerophosphoryl diester phosphodiesterase family NPA28_06720 PF05105 Bacteriophage holin family NPA28_06725 PF01510 N-acetylmuramoyl-L-alanine amidase NPA28_06725 PF01471 Putative peptidoglycan binding domain NPA28_06730 PF18593 CdiI immunity protein NPA28_06735 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH NPA28_06735 PF04740 LXG domain of WXG superfamily NPA28_06750 PF08863 YolD-like protein NPA28_06755 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_06790 PF01374 Glycosyl hydrolase family 46 NPA28_06800 PF13217 Protein of unknown function (DUF4025) NPA28_06805 PF11208 Protein of unknown function (DUF2992) NPA28_06810 PF13302 Acetyltransferase (GNAT) domain NPA28_06820 PF13411 MerR HTH family regulatory protein NPA28_06820 PF07739 TipAS antibiotic-recognition domain NPA28_06825 PF13783 Domain of unknown function (DUF4177) NPA28_06830 PF14154 Domain of unknown function (DUF4306) NPA28_06835 PF01040 UbiA prenyltransferase family NPA28_06845 PF11738 Protein of unknown function (DUF3298) NPA28_06845 PF13739 Deacetylase PdaC NPA28_06845 PF01522 Polysaccharide deacetylase NPA28_06850 PF10901 Protein of unknown function (DUF2690) NPA28_06855 PF14070 Putative motility protein NPA28_06860 PF10026 Predicted Zn-dependent protease (DUF2268) NPA28_06865 PF10990 Protein of unknown function (DUF2809) NPA28_06870 PF14172 Domain of unknown function (DUF4309) NPA28_06875 PF12838 4Fe-4S dicluster domain NPA28_06875 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NPA28_06875 PF00384 Molybdopterin oxidoreductase NPA28_06875 PF01568 Molydopterin dinucleotide binding domain NPA28_06875 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NPA28_06880 PF07849 Protein of unknown function (DUF1641) NPA28_06885 PF11611 Domain of unknown function (DUF4352) NPA28_06890 PF00293 NUDIX domain NPA28_06900 PF00067 Cytochrome P450 NPA28_06905 PF04101 Glycosyltransferase family 28 C-terminal domain NPA28_06920 PF02602 Uroporphyrinogen-III synthase HemD NPA28_06925 PF03649 Uncharacterised protein family (UPF0014) NPA28_06930 PF00005 ABC transporter NPA28_06935 PF13536 Putative multidrug resistance efflux transporter NPA28_06945 PF07849 Protein of unknown function (DUF1641) NPA28_06950 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_06955 PF02614 Glucuronate isomerase NPA28_06965 PF02615 Malate/L-lactate dehydrogenase NPA28_06970 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_06970 PF00107 Zinc-binding dehydrogenase NPA28_06975 PF03786 D-mannonate dehydratase (UxuA) NPA28_06980 PF00106 short chain dehydrogenase NPA28_06985 PF07690 Major Facilitator Superfamily NPA28_06990 PF00356 Bacterial regulatory proteins, lacI family NPA28_06995 PF01232 Mannitol dehydrogenase Rossmann domain NPA28_06995 PF08125 Mannitol dehydrogenase C-terminal domain NPA28_07000 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NPA28_07000 PF08666 SAF domain NPA28_07005 PF01925 Sulfite exporter TauE/SafE NPA28_07010 PF05163 DinB family NPA28_07015 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_07025 PF03795 YCII-related domain NPA28_07030 PF01471 Putative peptidoglycan binding domain NPA28_07030 PF01476 LysM domain NPA28_07030 PF01510 N-acetylmuramoyl-L-alanine amidase NPA28_07040 PF05908 Poly-gamma-glutamate hydrolase NPA28_07045 PF05067 Manganese containing catalase NPA28_07050 PF06114 IrrE N-terminal-like domain NPA28_07055 PF01381 Helix-turn-helix NPA28_07070 PF01695 IstB-like ATP binding protein NPA28_07085 PF17356 Phage-like element PBSX protein XtrA NPA28_07090 PF08281 Sigma-70, region 4 NPA28_07095 PF10668 Phage terminase small subunit NPA28_07095 PF03592 Terminase small subunit NPA28_07100 PF17288 Terminase RNAseH like domain NPA28_07100 PF04466 Phage terminase large subunit NPA28_07105 PF04860 Phage portal protein NPA28_07110 PF14550 Putative phage serine protease XkdF NPA28_07120 PF11436 Protein of unknown function (DUF3199) NPA28_07125 PF12206 Domain of unknown function (DUF3599) NPA28_07130 PF04883 Bacteriophage HK97-gp10, putative tail-component NPA28_07145 PF17482 Phage tail sheath C-terminal domain NPA28_07145 PF04984 Phage tail sheath protein subtilisin-like domain NPA28_07145 PF17481 Phage tail sheath protein beta-sandwich domain NPA28_07150 PF09393 Phage tail tube protein NPA28_07155 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC NPA28_07165 PF01464 Transglycosylase SLT domain NPA28_07170 PF01476 LysM domain NPA28_07180 PF10844 Protein of unknown function (DUF2577) NPA28_07185 PF10934 Protein of unknown function (DUF2634) NPA28_07190 PF04865 Baseplate J-like protein NPA28_07195 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) NPA28_07215 PF09636 XkdW protein NPA28_07220 PF09693 Phage uncharacterised protein (Phage_XkdX) NPA28_07230 PF10779 Haemolysin XhlA NPA28_07235 PF04688 SPP1 phage holin NPA28_07240 PF01471 Putative peptidoglycan binding domain NPA28_07240 PF01510 N-acetylmuramoyl-L-alanine amidase NPA28_07240 PF01476 LysM domain NPA28_07250 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system NPA28_07255 PF14171 Toxin SpoIISA, type II toxin-antitoxin system NPA28_07260 PF01384 Phosphate transporter family NPA28_07265 PF01865 Protein of unknown function DUF47 NPA28_07270 PF13520 Amino acid permease NPA28_07275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_07285 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NPA28_07290 PF00535 Glycosyl transferase family 2 NPA28_07300 PF13180 PDZ domain NPA28_07305 PF14748 Pyrroline-5-carboxylate reductase dimerisation NPA28_07305 PF03807 NADP oxidoreductase coenzyme F420-dependent NPA28_07310 PF04951 D-aminopeptidase NPA28_07315 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_07320 PF12911 N-terminal TM domain of oligopeptide transport permease C NPA28_07320 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_07325 PF00005 ABC transporter NPA28_07325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPA28_07330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NPA28_07335 PF02016 LD-carboxypeptidase N-terminal domain NPA28_07335 PF17676 LD-carboxypeptidase C-terminal domain NPA28_07340 PF13378 Enolase C-terminal domain-like NPA28_07340 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NPA28_07345 PF00877 NlpC/P60 family NPA28_07350 PF00005 ABC transporter NPA28_07350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NPA28_07355 PF10282 Lactonase, 7-bladed beta-propeller NPA28_07365 PF03061 Thioesterase superfamily NPA28_07370 PF00970 Oxidoreductase FAD-binding domain NPA28_07370 PF00042 Globin NPA28_07370 PF00175 Oxidoreductase NAD-binding domain NPA28_07380 PF04239 Protein of unknown function (DUF421) NPA28_07385 PF12867 DinB superfamily NPA28_07390 PF13302 Acetyltransferase (GNAT) domain NPA28_07395 PF00893 Small Multidrug Resistance protein NPA28_07400 PF00893 Small Multidrug Resistance protein NPA28_07405 PF01842 ACT domain NPA28_07405 PF00551 Formyl transferase NPA28_07410 PF01472 PUA domain NPA28_07410 PF00696 Amino acid kinase family NPA28_07415 PF00171 Aldehyde dehydrogenase family NPA28_07420 PF02566 OsmC-like protein NPA28_07425 PF01047 MarR family NPA28_07430 PF02566 OsmC-like protein NPA28_07435 PF13181 Tetratricopeptide repeat NPA28_07435 PF00535 Glycosyl transferase family 2 NPA28_07445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPA28_07450 PF00300 Histidine phosphatase superfamily (branch 1) NPA28_07455 PF08267 Cobalamin-independent synthase, N-terminal domain NPA28_07455 PF01717 Cobalamin-independent synthase, Catalytic domain NPA28_07460 PF00082 Subtilase family NPA28_07465 PF01740 STAS domain NPA28_07470 PF02361 Cobalt transport protein NPA28_07480 PF09819 ABC-type cobalt transport system, permease component NPA28_07490 PF00486 Transcriptional regulatory protein, C terminal NPA28_07490 PF00072 Response regulator receiver domain NPA28_07495 PF00672 HAMP domain NPA28_07495 PF00512 His Kinase A (phospho-acceptor) domain NPA28_07495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_07500 PF03413 Peptidase propeptide and YPEB domain NPA28_07505 PF03413 Peptidase propeptide and YPEB domain NPA28_07510 PF11132 Transcriptional regulator protein (SplA) NPA28_07520 PF00571 CBS domain NPA28_07520 PF01769 Divalent cation transporter NPA28_07520 PF03448 MgtE intracellular N domain NPA28_07525 PF13411 MerR HTH family regulatory protein NPA28_07540 PF01047 MarR family NPA28_07545 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase NPA28_07555 PF00149 Calcineurin-like phosphoesterase NPA28_07565 PF00535 Glycosyl transferase family 2 NPA28_07570 PF01068 ATP dependent DNA ligase domain NPA28_07575 PF02735 Ku70/Ku80 beta-barrel domain NPA28_07580 PF00990 Diguanylate cyclase, GGDEF domain NPA28_07580 PF03707 Bacterial signalling protein N terminal repeat NPA28_07580 PF00563 EAL domain NPA28_07585 PF09335 SNARE associated Golgi protein NPA28_07595 PF04542 Sigma-70 region 2 NPA28_07600 PF12791 Anti-sigma factor N-terminus NPA28_07605 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPA28_07610 PF08876 Domain of unknown function (DUF1836) NPA28_07615 PF01435 Peptidase family M48 NPA28_07620 PF02386 Cation transport protein NPA28_07635 PF01757 Acyltransferase family NPA28_07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_07640 PF00512 His Kinase A (phospho-acceptor) domain NPA28_07640 PF00989 PAS fold NPA28_07640 PF13188 PAS domain NPA28_07640 PF13426 PAS domain NPA28_07645 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NPA28_07645 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NPA28_07655 PF01008 Initiation factor 2 subunit family NPA28_07660 PF01636 Phosphotransferase enzyme family NPA28_07665 PF00795 Carbon-nitrogen hydrolase NPA28_07670 PF00155 Aminotransferase class I and II NPA28_07675 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain NPA28_07675 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain NPA28_07685 PF00596 Class II Aldolase and Adducin N-terminal domain NPA28_07690 PF03079 ARD/ARD' family NPA28_07695 PF06803 Protein of unknown function (DUF1232) NPA28_07700 PF09388 Spo0E like sporulation regulatory protein NPA28_07710 PF02743 Cache domain NPA28_07710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_07710 PF00512 His Kinase A (phospho-acceptor) domain NPA28_07715 PF01047 MarR family NPA28_07720 PF13677 Membrane MotB of proton-channel complex MotA/MotB NPA28_07720 PF00691 OmpA family NPA28_07725 PF01618 MotA/TolQ/ExbB proton channel family NPA28_07730 PF10431 C-terminal, D2-small domain, of ClpB protein NPA28_07730 PF17871 AAA lid domain NPA28_07730 PF07724 AAA domain (Cdc48 subfamily) NPA28_07730 PF00004 ATPase family associated with various cellular activities (AAA) NPA28_07740 PF06508 Queuosine biosynthesis protein QueC NPA28_07745 PF01242 6-pyruvoyl tetrahydropterin synthase NPA28_07750 PF04055 Radical SAM superfamily NPA28_07755 PF14489 QueF-like protein NPA28_07760 PF01476 LysM domain NPA28_07765 PF01476 LysM domain NPA28_07770 PF00704 Glycosyl hydrolases family 18 NPA28_07775 PF11514 Protein of unknown function (DUF3219) NPA28_07780 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) NPA28_07790 PF07486 Cell Wall Hydrolase NPA28_07795 PF01943 Polysaccharide biosynthesis protein NPA28_07800 PF00578 AhpC/TSA family NPA28_07815 PF01321 Creatinase/Prolidase N-terminal domain NPA28_07815 PF00557 Metallopeptidase family M24 NPA28_07825 PF00356 Bacterial regulatory proteins, lacI family NPA28_07825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NPA28_07830 PF03123 CAT RNA binding domain NPA28_07830 PF00874 PRD domain NPA28_07835 PF02378 Phosphotransferase system, EIIC NPA28_07835 PF00367 phosphotransferase system, EIIB NPA28_07835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPA28_07840 PF00381 PTS HPr component phosphorylation site NPA28_07845 PF05524 PEP-utilising enzyme, N-terminal NPA28_07845 PF00391 PEP-utilising enzyme, mobile domain NPA28_07845 PF02896 PEP-utilising enzyme, TIM barrel domain NPA28_07850 PF11132 Transcriptional regulator protein (SplA) NPA28_07860 PF00583 Acetyltransferase (GNAT) family NPA28_07865 PF02743 Cache domain NPA28_07865 PF00672 HAMP domain NPA28_07865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_07870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NPA28_07870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NPA28_07875 PF00188 Cysteine-rich secretory protein family NPA28_07880 PF03717 Penicillin-binding Protein dimerisation domain NPA28_07880 PF00905 Penicillin binding protein transpeptidase domain NPA28_07885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_07885 PF00512 His Kinase A (phospho-acceptor) domain NPA28_07885 PF00989 PAS fold NPA28_07885 PF08447 PAS fold NPA28_07890 PF00155 Aminotransferase class I and II NPA28_07900 PF01584 CheW-like domain NPA28_07900 PF00072 Response regulator receiver domain NPA28_07905 PF14177 YkyB-like protein NPA28_07910 PF07690 Major Facilitator Superfamily NPA28_07915 PF03734 L,D-transpeptidase catalytic domain NPA28_07915 PF01476 LysM domain NPA28_07920 PF10518 TAT (twin-arginine translocation) pathway signal sequence NPA28_07920 PF00149 Calcineurin-like phosphoesterase NPA28_07930 PF10388 EAL-domain associated signalling protein domain NPA28_07930 PF00563 EAL domain NPA28_07935 PF05067 Manganese containing catalase NPA28_07940 PF08796 Protein of unknown function (DUF1797) NPA28_07945 PF04308 Ribonuclease H-like NPA28_07950 PF14156 Antirepressor AbbA NPA28_07960 PF03466 LysR substrate binding domain NPA28_07960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_07965 PF00258 Flavodoxin NPA28_07975 PF00258 Flavodoxin NPA28_07980 PF14602 Hexapeptide repeat of succinyl-transferase NPA28_07980 PF00132 Bacterial transferase hexapeptide (six repeats) NPA28_07980 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal NPA28_07985 PF07687 Peptidase dimerisation domain NPA28_07985 PF01546 Peptidase family M20/M25/M40 NPA28_07990 PF03698 Uncharacterised protein family (UPF0180) NPA28_07995 PF00924 Mechanosensitive ion channel NPA28_08000 PF10417 C-terminal domain of 1-Cys peroxiredoxin NPA28_08000 PF00578 AhpC/TSA family NPA28_08005 PF00578 AhpC/TSA family NPA28_08020 PF12804 MobA-like NTP transferase domain NPA28_08025 PF00899 ThiF family NPA28_08030 PF03453 MoeA N-terminal region (domain I and II) NPA28_08030 PF00994 Probable molybdopterin binding domain NPA28_08030 PF03454 MoeA C-terminal region (domain IV) NPA28_08035 PF03205 Molybdopterin guanine dinucleotide synthesis protein B NPA28_08040 PF02391 MoaE protein NPA28_08045 PF02597 ThiS family NPA28_08050 PF00664 ABC transporter transmembrane region NPA28_08050 PF00005 ABC transporter NPA28_08055 PF00664 ABC transporter transmembrane region NPA28_08055 PF00005 ABC transporter NPA28_08060 PF04893 Yip1 domain NPA28_08065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NPA28_08070 PF00005 ABC transporter NPA28_08075 PF02687 FtsX-like permease family NPA28_08075 PF12704 MacB-like periplasmic core domain NPA28_08080 PF00455 DeoR C terminal sensor domain NPA28_08080 PF08220 DeoR-like helix-turn-helix domain NPA28_08085 PF00294 pfkB family carbohydrate kinase NPA28_08090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPA28_08090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPA28_08095 PF10502 Signal peptidase, peptidase S26 NPA28_08105 PF00005 ABC transporter NPA28_08105 PF12848 ABC transporter NPA28_08110 PF02558 Ketopantoate reductase PanE/ApbA NPA28_08110 PF08546 Ketopantoate reductase PanE/ApbA C terminal NPA28_08115 PF02073 Thermophilic metalloprotease (M29) NPA28_08120 PF17447 Uncharacterized YkpC-like NPA28_08130 PF18277 AbrB C-terminal domain NPA28_08130 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin NPA28_08135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_08135 PF00512 His Kinase A (phospho-acceptor) domain NPA28_08135 PF00989 PAS fold NPA28_08140 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like NPA28_08145 PF02080 TrkA-C domain NPA28_08145 PF02254 TrkA-N domain NPA28_08150 PF13382 Adenine deaminase C-terminal domain NPA28_08150 PF01979 Amidohydrolase family NPA28_08155 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NPA28_08155 PF00753 Metallo-beta-lactamase superfamily NPA28_08155 PF17770 Ribonuclease J C-terminal domain NPA28_08160 PF07288 Protein of unknown function (DUF1447) NPA28_08170 PF01327 Polypeptide deformylase NPA28_08180 PF10368 Putative cell-wall binding lipoprotein NPA28_08185 PF00676 Dehydrogenase E1 component NPA28_08190 PF02779 Transketolase, pyrimidine binding domain NPA28_08190 PF02780 Transketolase, C-terminal domain NPA28_08195 PF02817 e3 binding domain NPA28_08195 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NPA28_08195 PF00364 Biotin-requiring enzyme NPA28_08200 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_08200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPA28_08210 PF13790 SR1 protein NPA28_08215 PF01276 Orn/Lys/Arg decarboxylase, major domain NPA28_08215 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NPA28_08220 PF05256 Uncharacterised protein family (UPF0223) NPA28_08225 PF06335 Protein of unknown function (DUF1054) NPA28_08235 PF00459 Inositol monophosphatase family NPA28_08240 PF00583 Acetyltransferase (GNAT) family NPA28_08245 PF04072 Leucine carboxyl methyltransferase NPA28_08250 PF07504 Fungalysin/Thermolysin Propeptide Motif NPA28_08250 PF03413 Peptidase propeptide and YPEB domain NPA28_08250 PF02868 Thermolysin metallopeptidase, alpha-helical domain NPA28_08250 PF01447 Thermolysin metallopeptidase, catalytic domain NPA28_08260 PF13490 Putative zinc-finger NPA28_08270 PF17259 Family of unknown function (DUF5325) NPA28_08275 PF03144 Elongation factor Tu domain 2 NPA28_08275 PF00679 Elongation factor G C-terminus NPA28_08275 PF14492 Elongation Factor G, domain II NPA28_08275 PF00009 Elongation factor Tu GTP binding domain NPA28_08280 PF14036 YlaH-like protein NPA28_08285 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) NPA28_08290 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NPA28_08295 PF02562 PhoH-like protein NPA28_08295 PF13638 PIN domain NPA28_08305 PF04960 Glutaminase NPA28_08310 PF07408 Protein of unknown function (DUF1507) NPA28_08315 PF01098 Cell cycle protein NPA28_08320 PF02785 Biotin carboxylase C-terminal domain NPA28_08320 PF00289 Biotin carboxylase, N-terminal domain NPA28_08320 PF00364 Biotin-requiring enzyme NPA28_08320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPA28_08320 PF00682 HMGL-like NPA28_08320 PF02436 Conserved carboxylase domain NPA28_08325 PF02628 Cytochrome oxidase assembly protein NPA28_08330 PF01040 UbiA prenyltransferase family NPA28_08335 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NPA28_08335 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NPA28_08335 PF00034 Cytochrome c NPA28_08340 PF00115 Cytochrome C and Quinol oxidase polypeptide I NPA28_08345 PF00510 Cytochrome c oxidase subunit III NPA28_08350 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NPA28_08355 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) NPA28_08360 PF08868 YugN-like family NPA28_08365 PF00571 CBS domain NPA28_08370 PF14504 CAP-associated N-terminal NPA28_08370 PF00188 Cysteine-rich secretory protein family NPA28_08375 PF14071 Putative coat protein NPA28_08380 PF14003 YlbE-like protein NPA28_08385 PF06133 Control of competence regulator ComK, YlbF/YmcA NPA28_08390 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) NPA28_08400 PF01467 Cytidylyltransferase-like NPA28_08405 PF07670 Nucleoside recognition NPA28_08410 PF01734 Patatin-like phospholipase NPA28_08415 PF13180 PDZ domain NPA28_08415 PF05362 Lon protease (S16) C-terminal proteolytic domain NPA28_08420 PF05636 HIGH Nucleotidyl Transferase NPA28_08430 PF02620 Large ribosomal RNA subunit accumulation protein YceD NPA28_08435 PF01783 Ribosomal L32p protein family NPA28_08445 PF00583 Acetyltransferase (GNAT) family NPA28_08450 PF02558 Ketopantoate reductase PanE/ApbA NPA28_08450 PF08546 Ketopantoate reductase PanE/ApbA C terminal NPA28_08455 PF10079 Bacillithiol biosynthesis BshC NPA28_08460 PF02381 MraZ protein, putative antitoxin-like NPA28_08465 PF01795 MraW methylase family NPA28_08475 PF03793 PASTA domain NPA28_08475 PF03717 Penicillin-binding Protein dimerisation domain NPA28_08475 PF00905 Penicillin binding protein transpeptidase domain NPA28_08480 PF00905 Penicillin binding protein transpeptidase domain NPA28_08480 PF03793 PASTA domain NPA28_08480 PF03717 Penicillin-binding Protein dimerisation domain NPA28_08485 PF02875 Mur ligase family, glutamate ligase domain NPA28_08485 PF01225 Mur ligase family, catalytic domain NPA28_08485 PF08245 Mur ligase middle domain NPA28_08490 PF00953 Glycosyl transferase family 4 NPA28_08490 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NPA28_08495 PF08245 Mur ligase middle domain NPA28_08495 PF02875 Mur ligase family, glutamate ligase domain NPA28_08500 PF01098 Cell cycle protein NPA28_08505 PF04101 Glycosyltransferase family 28 C-terminal domain NPA28_08505 PF03033 Glycosyltransferase family 28 N-terminal domain NPA28_08510 PF01565 FAD binding domain NPA28_08510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NPA28_08515 PF08478 POTRA domain, FtsQ-type NPA28_08520 PF05949 Bacterial protein of unknown function (DUF881) NPA28_08525 PF05949 Bacterial protein of unknown function (DUF881) NPA28_08530 PF06947 Protein of unknown function (DUF1290) NPA28_08535 PF02491 SHS2 domain inserted in FTSA NPA28_08540 PF12327 FtsZ family, C-terminal domain NPA28_08540 PF00091 Tubulin/FtsZ family, GTPase domain NPA28_08545 PF05922 Peptidase inhibitor I9 NPA28_08545 PF00082 Subtilase family NPA28_08550 PF03419 Sporulation factor SpoIIGA NPA28_08555 PF04545 Sigma-70, region 4 NPA28_08555 PF04542 Sigma-70 region 2 NPA28_08560 PF04542 Sigma-70 region 2 NPA28_08560 PF04539 Sigma-70 region 3 NPA28_08560 PF04545 Sigma-70, region 4 NPA28_08565 PF00005 ABC transporter NPA28_08570 PF07687 Peptidase dimerisation domain NPA28_08570 PF01546 Peptidase family M20/M25/M40 NPA28_08575 PF05239 PRC-barrel domain NPA28_08580 PF02578 Multi-copper polyphenol oxidoreductase laccase NPA28_08585 PF01168 Alanine racemase, N-terminal domain NPA28_08590 PF04472 Cell division protein SepF NPA28_08595 PF02325 YGGT family NPA28_08600 PF01479 S4 domain NPA28_08600 PF17774 Putative RNA-binding domain in YlmH NPA28_08605 PF05103 DivIVA protein NPA28_08610 PF08264 Anticodon-binding domain of tRNA NPA28_08610 PF00133 tRNA synthetases class I (I, L, M and V) NPA28_08615 PF01258 Prokaryotic dksA/traR C4-type zinc finger NPA28_08620 PF01252 Signal peptidase (SPase) II NPA28_08625 PF00849 RNA pseudouridylate synthase NPA28_08625 PF01479 S4 domain NPA28_08630 PF00156 Phosphoribosyl transferase domain NPA28_08635 PF00860 Permease family NPA28_08640 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NPA28_08640 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NPA28_08645 PF01979 Amidohydrolase family NPA28_08650 PF00117 Glutamine amidotransferase class-I NPA28_08650 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NPA28_08655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPA28_08655 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NPA28_08655 PF02142 MGS-like domain NPA28_08660 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NPA28_08660 PF00175 Oxidoreductase NAD-binding domain NPA28_08665 PF01180 Dihydroorotate dehydrogenase NPA28_08670 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NPA28_08675 PF00156 Phosphoribosyl transferase domain NPA28_08680 PF01507 Phosphoadenosine phosphosulfate reductase family NPA28_08685 PF01384 Phosphate transporter family NPA28_08690 PF14306 PUA-like domain NPA28_08690 PF01747 ATP-sulfurylase NPA28_08700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NPA28_08705 PF01903 CbiX NPA28_08715 PF05670 NFACT protein RNA binding domain NPA28_08720 PF00689 Cation transporting ATPase, C-terminus NPA28_08720 PF00690 Cation transporter/ATPase, N-terminus NPA28_08725 PF08340 Domain of unknown function (DUF1732) NPA28_08725 PF03755 YicC-like family, N-terminal region NPA28_08730 PF04025 Domain of unknown function (DUF370) NPA28_08735 PF00625 Guanylate kinase NPA28_08740 PF01192 RNA polymerase Rpb6 NPA28_08745 PF02441 Flavoprotein NPA28_08745 PF04127 DNA / pantothenate metabolism flavoprotein NPA28_08750 PF17764 3′ DNA-binding domain (3′BD) NPA28_08750 PF18074 Primosomal protein N C-terminal domain NPA28_08750 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NPA28_08750 PF04851 Type III restriction enzyme, res subunit NPA28_08750 PF00271 Helicase conserved C-terminal domain NPA28_08755 PF01327 Polypeptide deformylase NPA28_08760 PF02911 Formyl transferase, C-terminal domain NPA28_08760 PF00551 Formyl transferase NPA28_08765 PF01189 16S rRNA methyltransferase RsmB/F NPA28_08765 PF01029 NusB family NPA28_08770 PF04055 Radical SAM superfamily NPA28_08780 PF00069 Protein kinase domain NPA28_08780 PF03793 PASTA domain NPA28_08785 PF03193 RsgA GTPase NPA28_08785 PF16745 RsgA N-terminal domain NPA28_08790 PF00834 Ribulose-phosphate 3 epimerase family NPA28_08795 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain NPA28_08795 PF04263 Thiamin pyrophosphokinase, catalytic domain NPA28_08800 PF08183 Stage V sporulation protein family NPA28_08805 PF00830 Ribosomal L28 family NPA28_08810 PF03780 Asp23 family, cell envelope-related function NPA28_08815 PF13684 Dihydroxyacetone kinase family NPA28_08815 PF02734 DAK2 domain NPA28_08820 PF03315 Serine dehydratase beta chain NPA28_08820 PF01842 ACT domain NPA28_08825 PF03313 Serine dehydratase alpha chain NPA28_08830 PF00270 DEAD/DEAH box helicase NPA28_08830 PF00271 Helicase conserved C-terminal domain NPA28_08830 PF17191 RecG wedge domain NPA28_08835 PF03061 Thioesterase superfamily NPA28_08840 PF02504 Fatty acid synthesis protein NPA28_08845 PF00698 Acyl transferase domain NPA28_08855 PF00550 Phosphopantetheine attachment site NPA28_08860 PF14622 Ribonuclease-III-like NPA28_08860 PF00035 Double-stranded RNA binding motif NPA28_08865 PF06470 SMC proteins Flexible Hinge Domain NPA28_08865 PF02463 RecF/RecN/SMC N terminal domain NPA28_08870 PF02881 SRP54-type protein, helical bundle domain NPA28_08870 PF00448 SRP54-type protein, GTPase domain NPA28_08875 PF02369 Bacterial Ig-like domain (group 1) NPA28_08880 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NPA28_08885 PF00448 SRP54-type protein, GTPase domain NPA28_08885 PF02978 Signal peptide binding domain NPA28_08885 PF02881 SRP54-type protein, helical bundle domain NPA28_08890 PF00886 Ribosomal protein S16 NPA28_08900 PF11068 YlqD protein NPA28_08905 PF05239 PRC-barrel domain NPA28_08905 PF01782 RimM N-terminal domain NPA28_08910 PF01746 tRNA (Guanine-1)-methyltransferase NPA28_08915 PF01245 Ribosomal protein L19 NPA28_08920 PF01926 50S ribosome-binding GTPase NPA28_08925 PF01351 Ribonuclease HII NPA28_08935 PF01312 FlhB HrpN YscU SpaS Family NPA28_08940 PF08442 ATP-grasp domain NPA28_08940 PF00549 CoA-ligase NPA28_08945 PF02629 CoA binding domain NPA28_08945 PF00549 CoA-ligase NPA28_08950 PF02481 DNA recombination-mediator protein A NPA28_08955 PF01131 DNA topoisomerase NPA28_08955 PF01751 Toprim domain NPA28_08955 PF01396 Topoisomerase DNA binding C4 zinc finger NPA28_08960 PF01134 Glucose inhibited division protein A NPA28_08965 PF02899 Phage integrase, N-terminal SAM-like domain NPA28_08965 PF00589 Phage integrase family NPA28_08970 PF00227 Proteasome subunit NPA28_08975 PF10431 C-terminal, D2-small domain, of ClpB protein NPA28_08975 PF07724 AAA domain (Cdc48 subfamily) NPA28_08975 PF00004 ATPase family associated with various cellular activities (AAA) NPA28_08980 PF06018 CodY GAF-like domain NPA28_08980 PF08222 CodY helix-turn-helix domain NPA28_08985 PF00460 Flagella basal body rod protein NPA28_08990 PF00460 Flagella basal body rod protein NPA28_08990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPA28_08995 PF02049 Flagellar hook-basal body complex protein FliE NPA28_09000 PF01514 Secretory protein of YscJ/FliF family NPA28_09000 PF08345 Flagellar M-ring protein C-terminal NPA28_09005 PF01706 FliG C-terminal domain NPA28_09005 PF14841 FliG middle domain NPA28_09005 PF14842 FliG N-terminal domain NPA28_09010 PF02108 Flagellar assembly protein FliH NPA28_09015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPA28_09015 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPA28_09015 PF18269 T3SS EscN ATPase C-terminal domain NPA28_09020 PF02050 Flagellar FliJ protein NPA28_09025 PF03448 MgtE intracellular N domain NPA28_09030 PF02120 Flagellar hook-length control protein FliK NPA28_09035 PF03963 Flagellar hook capping protein - N-terminal region NPA28_09040 PF00460 Flagella basal body rod protein NPA28_09040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPA28_09045 PF06289 Flagellar and Swarming motility proteins NPA28_09050 PF03748 Flagellar basal body-associated protein FliL NPA28_09055 PF02154 Flagellar motor switch protein FliM NPA28_09055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NPA28_09060 PF04509 CheC-like family NPA28_09060 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NPA28_09065 PF00072 Response regulator receiver domain NPA28_09070 PF04347 Flagellar biosynthesis protein, FliO NPA28_09075 PF00813 FliP family NPA28_09080 PF01313 Bacterial export proteins, family 3 NPA28_09085 PF01311 Bacterial export proteins, family 1 NPA28_09090 PF01312 FlhB HrpN YscU SpaS Family NPA28_09095 PF00771 FHIPEP family NPA28_09100 PF00448 SRP54-type protein, GTPase domain NPA28_09105 PF10609 NUBPL iron-transfer P-loop NTPase NPA28_09110 PF01339 CheB methylesterase NPA28_09110 PF00072 Response regulator receiver domain NPA28_09115 PF01584 CheW-like domain NPA28_09115 PF02895 Signal transducing histidine kinase, homodimeric domain NPA28_09115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_09115 PF01627 Hpt domain NPA28_09115 PF07194 P2 response regulator binding domain NPA28_09120 PF01584 CheW-like domain NPA28_09125 PF04509 CheC-like family NPA28_09130 PF03975 CheD chemotactic sensory transduction NPA28_09135 PF04545 Sigma-70, region 4 NPA28_09135 PF04542 Sigma-70 region 2 NPA28_09135 PF04539 Sigma-70 region 3 NPA28_09145 PF00318 Ribosomal protein S2 NPA28_09150 PF00889 Elongation factor TS NPA28_09155 PF00696 Amino acid kinase family NPA28_09160 PF01765 Ribosome recycling factor NPA28_09165 PF01255 Putative undecaprenyl diphosphate synthase NPA28_09175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NPA28_09175 PF13288 DXP reductoisomerase C-terminal domain NPA28_09175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NPA28_09180 PF02163 Peptidase family M50 NPA28_09180 PF17820 PDZ domain NPA28_09185 PF04073 Aminoacyl-tRNA editing domain NPA28_09185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPA28_09185 PF03129 Anticodon binding domain NPA28_09190 PF14480 DNA polymerase III polC-type N-terminus I NPA28_09190 PF11490 DNA polymerase III polC-type N-terminus II NPA28_09190 PF07733 Bacterial DNA polymerase III alpha NTPase domain NPA28_09190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NPA28_09190 PF14579 Helix-hairpin-helix motif NPA28_09190 PF02811 PHP domain NPA28_09190 PF00929 Exonuclease NPA28_09195 PF02576 RimP N-terminal domain NPA28_09195 PF17384 RimP C-terminal SH3 domain NPA28_09200 PF13184 NusA-like KH domain NPA28_09200 PF08529 NusA N-terminal domain NPA28_09200 PF00575 S1 RNA binding domain NPA28_09205 PF04296 Protein of unknown function (DUF448) NPA28_09210 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NPA28_09215 PF00009 Elongation factor Tu GTP binding domain NPA28_09215 PF11987 Translation-initiation factor 2 NPA28_09215 PF04760 Translation initiation factor IF-2, N-terminal region NPA28_09220 PF04456 Protein of unknown function (DUF503) NPA28_09225 PF02033 Ribosome-binding factor A NPA28_09230 PF16198 tRNA pseudouridylate synthase B C-terminal domain NPA28_09230 PF01509 TruB family pseudouridylate synthase (N terminal domain) NPA28_09235 PF06574 FAD synthetase NPA28_09235 PF01687 Riboflavin kinase NPA28_09240 PF00312 Ribosomal protein S15 NPA28_09245 PF00575 S1 RNA binding domain NPA28_09245 PF03725 3' exoribonuclease family, domain 2 NPA28_09245 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NPA28_09245 PF00013 KH domain NPA28_09245 PF01138 3' exoribonuclease family, domain 1 NPA28_09250 PF01522 Polysaccharide deacetylase NPA28_09255 PF00675 Insulinase (Peptidase family M16) NPA28_09255 PF05193 Peptidase M16 inactive domain NPA28_09260 PF05239 PRC-barrel domain NPA28_09265 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NPA28_09265 PF16924 Dipicolinate synthase subunit A N-terminal domain NPA28_09270 PF02441 Flavoprotein NPA28_09275 PF01118 Semialdehyde dehydrogenase, NAD binding domain NPA28_09275 PF02774 Semialdehyde dehydrogenase, dimerisation domain NPA28_09280 PF00696 Amino acid kinase family NPA28_09280 PF13840 ACT domain NPA28_09285 PF00701 Dihydrodipicolinate synthetase family NPA28_09290 PF00753 Metallo-beta-lactamase superfamily NPA28_09290 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NPA28_09290 PF17770 Ribonuclease J C-terminal domain NPA28_09295 PF00574 Clp protease NPA28_09300 PF14035 YlzJ-like protein NPA28_09305 PF01580 FtsK/SpoIIIE family NPA28_09305 PF17854 FtsK alpha domain NPA28_09305 PF09397 Ftsk gamma domain NPA28_09310 PF00392 Bacterial regulatory proteins, gntR family NPA28_09310 PF07702 UTRA domain NPA28_09315 PF07690 Major Facilitator Superfamily NPA28_09320 PF05193 Peptidase M16 inactive domain NPA28_09325 PF00675 Insulinase (Peptidase family M16) NPA28_09325 PF05193 Peptidase M16 inactive domain NPA28_09335 PF11588 Protein of unknown function (DUF3243) NPA28_09340 PF11868 Protein of unknown function (DUF3388) NPA28_09345 PF13464 Domain of unknown function (DUF4115) NPA28_09350 PF01066 CDP-alcohol phosphatidyltransferase NPA28_09355 PF00994 Probable molybdopterin binding domain NPA28_09355 PF02464 Competence-damaged protein NPA28_09355 PF18146 Damage-inducible protein CinA KH domain NPA28_09360 PF00154 recA bacterial DNA recombination protein NPA28_09365 PF00144 Beta-lactamase NPA28_09370 PF12072 Domain of unknown function (DUF3552) NPA28_09370 PF01966 HD domain NPA28_09370 PF00013 KH domain NPA28_09375 PF13277 YmdB-like protein NPA28_09380 PF04232 Stage V sporulation protein S (SpoVS) NPA28_09385 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_09385 PF00107 Zinc-binding dehydrogenase NPA28_09390 PF00155 Aminotransferase class I and II NPA28_09395 PF04055 Radical SAM superfamily NPA28_09395 PF01938 TRAM domain NPA28_09395 PF00919 Uncharacterized protein family UPF0004 NPA28_09400 PF06133 Control of competence regulator ComK, YlbF/YmcA NPA28_09405 PF10628 Outer spore coat protein E (CotE) NPA28_09410 PF00488 MutS domain V NPA28_09410 PF05190 MutS family domain IV NPA28_09410 PF05192 MutS domain III NPA28_09410 PF05188 MutS domain II NPA28_09410 PF01624 MutS domain I NPA28_09415 PF01119 DNA mismatch repair protein, C-terminal domain NPA28_09415 PF08676 MutL C terminal dimerisation domain NPA28_09460 PF14184 Regulatory protein YrvL NPA28_09470 PF00440 Bacterial regulatory proteins, tetR family NPA28_09470 PF13977 BetI-type transcriptional repressor, C-terminal NPA28_09475 PF00753 Metallo-beta-lactamase superfamily NPA28_09480 PF00698 Acyl transferase domain NPA28_09485 PF00698 Acyl transferase domain NPA28_09490 PF03060 Nitronate monooxygenase NPA28_09490 PF00698 Acyl transferase domain NPA28_09495 PF00550 Phosphopantetheine attachment site NPA28_09500 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_09500 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_09505 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal NPA28_09505 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal NPA28_09510 PF00378 Enoyl-CoA hydratase/isomerase NPA28_09515 PF00378 Enoyl-CoA hydratase/isomerase NPA28_09520 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_09520 PF00550 Phosphopantetheine attachment site NPA28_09520 PF08659 KR domain NPA28_09520 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_09520 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_09520 PF00668 Condensation domain NPA28_09520 PF13193 AMP-binding enzyme C-terminal domain NPA28_09520 PF14765 Polyketide synthase dehydratase NPA28_09520 PF00501 AMP-binding enzyme NPA28_09525 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_09525 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_09525 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_09525 PF08659 KR domain NPA28_09525 PF00550 Phosphopantetheine attachment site NPA28_09525 PF14765 Polyketide synthase dehydratase NPA28_09530 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_09530 PF00550 Phosphopantetheine attachment site NPA28_09530 PF08242 Methyltransferase domain NPA28_09530 PF08659 KR domain NPA28_09530 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_09530 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_09530 PF14765 Polyketide synthase dehydratase NPA28_09535 PF08659 KR domain NPA28_09535 PF14765 Polyketide synthase dehydratase NPA28_09535 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_09535 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_09535 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_09535 PF00668 Condensation domain NPA28_09535 PF00501 AMP-binding enzyme NPA28_09535 PF13193 AMP-binding enzyme C-terminal domain NPA28_09535 PF00550 Phosphopantetheine attachment site NPA28_09540 PF00550 Phosphopantetheine attachment site NPA28_09540 PF14765 Polyketide synthase dehydratase NPA28_09540 PF02801 Beta-ketoacyl synthase, C-terminal domain NPA28_09540 PF00975 Thioesterase domain NPA28_09540 PF00109 Beta-ketoacyl synthase, N-terminal domain NPA28_09540 PF16197 Ketoacyl-synthetase C-terminal extension NPA28_09540 PF08242 Methyltransferase domain NPA28_09545 PF00067 Cytochrome P450 NPA28_09555 PF00082 Subtilase family NPA28_09565 PF05908 Poly-gamma-glutamate hydrolase NPA28_09570 PF02566 OsmC-like protein NPA28_09575 PF00893 Small Multidrug Resistance protein NPA28_09580 PF00893 Small Multidrug Resistance protein NPA28_09590 PF12788 YmaF family NPA28_09600 PF17209 Hfq protein NPA28_09605 PF00128 Alpha amylase, catalytic domain NPA28_09605 PF09154 Domain of unknown function (DUF1939) NPA28_09610 PF14157 YmzC-like protein NPA28_09620 PF07972 NrdI Flavodoxin like NPA28_09625 PF00317 Ribonucleotide reductase, all-alpha domain NPA28_09625 PF08343 Ribonucleotide reductase N-terminal NPA28_09625 PF02867 Ribonucleotide reductase, barrel domain NPA28_09630 PF00268 Ribonucleotide reductase, small chain NPA28_09640 PF01520 N-acetylmuramoyl-L-alanine amidase NPA28_09640 PF05036 Sporulation related domain NPA28_09645 PF00005 ABC transporter NPA28_09650 PF17866 AAA lid domain NPA28_09650 PF00004 ATPase family associated with various cellular activities (AAA) NPA28_09655 PF16360 GTP-binding GTPase Middle Region NPA28_09655 PF01926 50S ribosome-binding GTPase NPA28_09655 PF13167 GTP-binding GTPase N-terminal NPA28_09660 PF06838 Methionine gamma-lyase NPA28_09665 PF13411 MerR HTH family regulatory protein NPA28_09670 PF00120 Glutamine synthetase, catalytic domain NPA28_09670 PF03951 Glutamine synthetase, beta-Grasp domain NPA28_09695 PF00722 Glycosyl hydrolases family 16 NPA28_09730 PF14037 YoqO-like protein NPA28_09755 PF00457 Glycosyl hydrolases family 11 NPA28_09760 PF03781 Sulfatase-modifying factor enzyme 1 NPA28_09790 PF01168 Alanine racemase, N-terminal domain NPA28_09790 PF00842 Alanine racemase, C-terminal domain NPA28_09795 PF04294 VanW like protein NPA28_09800 PF05675 Protein of unknown function (DUF817) NPA28_09805 PF13443 Cro/C1-type HTH DNA-binding domain NPA28_09810 PF11188 Protein of unknown function (DUF2975) NPA28_09815 PF02586 SOS response associated peptidase (SRAP) NPA28_09820 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain NPA28_09820 PF12708 Pectate lyase superfamily protein NPA28_09830 PF15493 Domain of unknown function, YrpD NPA28_09840 PF02416 mttA/Hcf106 family NPA28_09850 PF08327 Activator of Hsp90 ATPase homolog 1-like protein NPA28_09865 PF13761 Domain of unknown function (DUF4166) NPA28_09870 PF14158 YndJ-like protein NPA28_09880 PF05908 Poly-gamma-glutamate hydrolase NPA28_09885 PF10710 Protein of unknown function (DUF2512) NPA28_09900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_09910 PF01726 LexA DNA binding domain NPA28_09910 PF00717 Peptidase S24-like NPA28_09915 PF01476 LysM domain NPA28_09920 PF00239 Resolvase, N terminal domain NPA28_09925 PF05979 Bacterial protein of unknown function (DUF896) NPA28_09930 PF02779 Transketolase, pyrimidine binding domain NPA28_09930 PF02780 Transketolase, C-terminal domain NPA28_09930 PF00456 Transketolase, thiamine diphosphate binding domain NPA28_09935 PF10747 Sporulation inhibitor of replication protein SirA NPA28_09940 PF03672 Uncharacterised protein family (UPF0154) NPA28_09945 PF09388 Spo0E like sporulation regulatory protein NPA28_09950 PF02683 Cytochrome C biogenesis protein transmembrane region NPA28_09955 PF00072 Response regulator receiver domain NPA28_09960 PF07301 Protein of unknown function (DUF1453) NPA28_09965 PF11084 Protein of unknown function (DUF2621) NPA28_09975 PF08179 Small acid-soluble spore protein P family NPA28_09985 PF00330 Aconitase family (aconitate hydratase) NPA28_09985 PF00694 Aconitase C-terminal domain NPA28_09990 PF00578 AhpC/TSA family NPA28_09995 PF13040 Fur-regulated basic protein B NPA28_10000 PF08177 Small acid-soluble spore protein N family NPA28_10010 PF03061 Thioesterase superfamily NPA28_10020 PF01521 Iron-sulphur cluster biosynthesis NPA28_10025 PF02660 Glycerol-3-phosphate acyltransferase NPA28_10030 PF13380 CoA binding domain NPA28_10035 PF00204 DNA gyrase B NPA28_10035 PF00986 DNA gyrase B subunit, carboxyl terminus NPA28_10035 PF01751 Toprim domain NPA28_10035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_10040 PF00521 DNA gyrase/topoisomerase IV, subunit A NPA28_10040 PF03989 DNA gyrase C-terminal domain, beta-propeller NPA28_10055 PF01235 Sodium:alanine symporter family NPA28_10060 PF00942 Cellulose binding domain NPA28_10060 PF00150 Cellulase (glycosyl hydrolase family 5) NPA28_10065 PF17452 Uncharacterized YnfE-like NPA28_10080 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain NPA28_10080 PF17189 Glycosyl hydrolase family 30 beta sandwich domain NPA28_10085 PF03422 Carbohydrate binding module (family 6) NPA28_10085 PF04616 Glycosyl hydrolases family 43 NPA28_10100 PF04138 GtrA-like protein NPA28_10105 PF00483 Nucleotidyl transferase NPA28_10110 PF09335 SNARE associated Golgi protein NPA28_10120 PF01039 Carboxyl transferase domain NPA28_10125 PF00378 Enoyl-CoA hydratase/isomerase NPA28_10130 PF00682 HMGL-like NPA28_10135 PF00364 Biotin-requiring enzyme NPA28_10140 PF02785 Biotin carboxylase C-terminal domain NPA28_10140 PF00289 Biotin carboxylase, N-terminal domain NPA28_10140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPA28_10145 PF00501 AMP-binding enzyme NPA28_10145 PF13193 AMP-binding enzyme C-terminal domain NPA28_10150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPA28_10150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPA28_10150 PF02770 Acyl-CoA dehydrogenase, middle domain NPA28_10160 PF02638 Glycosyl hydrolase-like 10 NPA28_10165 PF07098 Protein of unknown function (DUF1360) NPA28_10170 PF00975 Thioesterase domain NPA28_10170 PF00550 Phosphopantetheine attachment site NPA28_10170 PF00668 Condensation domain NPA28_10170 PF13193 AMP-binding enzyme C-terminal domain NPA28_10170 PF00501 AMP-binding enzyme NPA28_10175 PF00550 Phosphopantetheine attachment site NPA28_10175 PF00668 Condensation domain NPA28_10175 PF13193 AMP-binding enzyme C-terminal domain NPA28_10175 PF00501 AMP-binding enzyme NPA28_10180 PF00668 Condensation domain NPA28_10180 PF00550 Phosphopantetheine attachment site NPA28_10180 PF13193 AMP-binding enzyme C-terminal domain NPA28_10180 PF00501 AMP-binding enzyme NPA28_10185 PF00501 AMP-binding enzyme NPA28_10185 PF00668 Condensation domain NPA28_10185 PF00550 Phosphopantetheine attachment site NPA28_10185 PF13193 AMP-binding enzyme C-terminal domain NPA28_10190 PF00501 AMP-binding enzyme NPA28_10190 PF00668 Condensation domain NPA28_10190 PF00550 Phosphopantetheine attachment site NPA28_10190 PF13193 AMP-binding enzyme C-terminal domain NPA28_10195 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NPA28_10200 PF01263 Aldose 1-epimerase NPA28_10205 PF01554 MatE NPA28_10210 PF16800 IseA DL-endopeptidase inhibitor NPA28_10220 PF00589 Phage integrase family NPA28_10225 PF12728 Helix-turn-helix domain NPA28_10235 PF03466 LysR substrate binding domain NPA28_10235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_10240 PF00107 Zinc-binding dehydrogenase NPA28_10240 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_10245 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NPA28_10245 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_10250 PF00310 Glutamine amidotransferases class-II NPA28_10250 PF04898 Glutamate synthase central domain NPA28_10250 PF01645 Conserved region in glutamate synthase NPA28_10250 PF01493 GXGXG motif NPA28_10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_10255 PF03466 LysR substrate binding domain NPA28_10260 PF00696 Amino acid kinase family NPA28_10260 PF01472 PUA domain NPA28_10265 PF03807 NADP oxidoreductase coenzyme F420-dependent NPA28_10265 PF14748 Pyrroline-5-carboxylate reductase dimerisation NPA28_10270 PF02334 Replication terminator protein NPA28_10280 PF00106 short chain dehydrogenase NPA28_10285 PF06103 Bacterial protein of unknown function (DUF948) NPA28_10295 PF13302 Acetyltransferase (GNAT) domain NPA28_10310 PF00005 ABC transporter NPA28_10320 PF07690 Major Facilitator Superfamily NPA28_10325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPA28_10325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPA28_10330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPA28_10330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPA28_10335 PF01568 Molydopterin dinucleotide binding domain NPA28_10335 PF00384 Molybdopterin oxidoreductase NPA28_10335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NPA28_10345 PF03330 Lytic transglycolase NPA28_10350 PF06912 Protein of unknown function (DUF1275) NPA28_10355 PF00544 Pectate lyase NPA28_10360 PF00106 short chain dehydrogenase NPA28_10380 PF11518 Protein of unknown function (DUF3221) NPA28_10390 PF16302 Domain of unknown function (DUF4944) NPA28_10405 PF00083 Sugar (and other) transporter NPA28_10415 PF01593 Flavin containing amine oxidoreductase NPA28_10425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPA28_10425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPA28_10430 PF01261 Xylose isomerase-like TIM barrel NPA28_10435 PF00480 ROK family NPA28_10440 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain NPA28_10440 PF04616 Glycosyl hydrolases family 43 NPA28_10460 PF17094 Uncharacterised protein family (UPF0715) NPA28_10470 PF18416 N-acetylglucosamine binding protein domain 2 NPA28_10470 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NPA28_10475 PF05163 DinB family NPA28_10485 PF13302 Acetyltransferase (GNAT) domain NPA28_10530 PF17094 Uncharacterised protein family (UPF0715) NPA28_10550 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_10565 PF00391 PEP-utilising enzyme, mobile domain NPA28_10565 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NPA28_10580 PF01638 HxlR-like helix-turn-helix NPA28_10585 PF01588 Putative tRNA binding domain NPA28_10590 PF12833 Helix-turn-helix domain NPA28_10590 PF07883 Cupin domain NPA28_10595 PF00583 Acetyltransferase (GNAT) family NPA28_10600 PF13305 Tetracyclin repressor-like, C-terminal domain NPA28_10600 PF00440 Bacterial regulatory proteins, tetR family NPA28_10605 PF00753 Metallo-beta-lactamase superfamily NPA28_10610 PF06445 GyrI-like small molecule binding domain NPA28_10615 PF08279 HTH domain NPA28_10615 PF13280 WYL domain NPA28_10625 PF01022 Bacterial regulatory protein, arsR family NPA28_10635 PF04238 Protein of unknown function (DUF420) NPA28_10640 PF18846 Bacterial archaeo-eukaryotic release factor family 5 NPA28_10650 PF02016 LD-carboxypeptidase N-terminal domain NPA28_10650 PF17676 LD-carboxypeptidase C-terminal domain NPA28_10655 PF00487 Fatty acid desaturase NPA28_10660 PF07730 Histidine kinase NPA28_10665 PF00072 Response regulator receiver domain NPA28_10665 PF00196 Bacterial regulatory proteins, luxR family NPA28_10670 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) NPA28_10680 PF01476 LysM domain NPA28_10680 PF06725 3D domain NPA28_10685 PF09382 RQC domain NPA28_10685 PF16124 RecQ zinc-binding NPA28_10685 PF00271 Helicase conserved C-terminal domain NPA28_10685 PF00570 HRDC domain NPA28_10685 PF00270 DEAD/DEAH box helicase NPA28_10695 PF02525 Flavodoxin-like fold NPA28_10700 PF01258 Prokaryotic dksA/traR C4-type zinc finger NPA28_10705 PF08000 Bacterial PH domain NPA28_10715 PF00171 Aldehyde dehydrogenase family NPA28_10720 PF13243 Squalene-hopene cyclase C-terminal domain NPA28_10720 PF13249 Squalene-hopene cyclase N-terminal domain NPA28_10725 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NPA28_10725 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NPA28_10730 PF00209 Sodium:neurotransmitter symporter family NPA28_10735 PF01758 Sodium Bile acid symporter family NPA28_10740 PF00364 Biotin-requiring enzyme NPA28_10740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NPA28_10740 PF02817 e3 binding domain NPA28_10745 PF16870 2-oxoglutarate dehydrogenase C-terminal NPA28_10745 PF02779 Transketolase, pyrimidine binding domain NPA28_10745 PF00676 Dehydrogenase E1 component NPA28_10750 PF00092 von Willebrand factor type A domain NPA28_10755 PF07728 AAA domain (dynein-related subfamily) NPA28_10760 PF13627 Prokaryotic lipoprotein-attachment site NPA28_10760 PF00080 Copper/zinc superoxide dismutase (SODC) NPA28_10765 PF01476 LysM domain NPA28_10765 PF00877 NlpC/P60 family NPA28_10770 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase NPA28_10775 PF02457 DisA bacterial checkpoint controller nucleotide-binding NPA28_10775 PF10372 Bacterial membrane-spanning protein N-terminus NPA28_10780 PF01554 MatE NPA28_10785 PF01740 STAS domain NPA28_10790 PF02585 GlcNAc-PI de-N-acetylase NPA28_10795 PF08830 Protein of unknown function (DUF1806) NPA28_10805 PF00892 EamA-like transporter family NPA28_10825 PF14552 Tautomerase enzyme NPA28_10835 PF01638 HxlR-like helix-turn-helix NPA28_10840 PF00881 Nitroreductase family NPA28_10845 PF01738 Dienelactone hydrolase family NPA28_10850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_10855 PF11755 Protein of unknown function (DUF3311) NPA28_10860 PF00474 Sodium:solute symporter family NPA28_10865 PF17820 PDZ domain NPA28_10865 PF03572 Peptidase family S41 NPA28_10865 PF01471 Putative peptidoglycan binding domain NPA28_10870 PF08241 Methyltransferase domain NPA28_10880 PF02557 D-alanyl-D-alanine carboxypeptidase NPA28_10885 PF01048 Phosphorylase superfamily NPA28_10895 PF00440 Bacterial regulatory proteins, tetR family NPA28_10895 PF16859 Tetracyclin repressor-like, C-terminal domain NPA28_10900 PF07690 Major Facilitator Superfamily NPA28_10915 PF14191 YodL-like NPA28_10920 PF01569 PAP2 superfamily NPA28_10925 PF14162 YozD-like protein NPA28_10940 PF06855 YozE SAM-like fold NPA28_10945 PF14122 YokU-like protein, putative antitoxin NPA28_10950 PF12544 Lysine-2,3-aminomutase NPA28_10955 PF00583 Acetyltransferase (GNAT) family NPA28_10960 PF07687 Peptidase dimerisation domain NPA28_10960 PF01546 Peptidase family M20/M25/M40 NPA28_10965 PF01144 Coenzyme A transferase NPA28_10970 PF01144 Coenzyme A transferase NPA28_10975 PF00202 Aminotransferase class-III NPA28_10985 PF00583 Acetyltransferase (GNAT) family NPA28_10990 PF00535 Glycosyl transferase family 2 NPA28_11005 PF12996 DUF based on E. rectale Gene description (DUF3880) NPA28_11010 PF02333 Phytase NPA28_11035 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_11040 PF13302 Acetyltransferase (GNAT) domain NPA28_11050 PF00899 ThiF family NPA28_11055 PF01209 ubiE/COQ5 methyltransferase family NPA28_11060 PF07690 Major Facilitator Superfamily NPA28_11070 PF08863 YolD-like protein NPA28_11085 PF13302 Acetyltransferase (GNAT) domain NPA28_11105 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH NPA28_11105 PF04740 LXG domain of WXG superfamily NPA28_11110 PF09346 SMI1 / KNR4 family (SUKH-1) NPA28_11140 PF00005 ABC transporter NPA28_11140 PF02687 FtsX-like permease family NPA28_11140 PF12704 MacB-like periplasmic core domain NPA28_11160 PF07508 Recombinase NPA28_11160 PF00239 Resolvase, N terminal domain NPA28_11165 PF02719 Polysaccharide biosynthesis protein NPA28_11170 PF01641 SelR domain NPA28_11175 PF01625 Peptide methionine sulfoxide reductase NPA28_11180 PF01047 MarR family NPA28_11185 PF01554 MatE NPA28_11190 PF17431 Uncharacterized YmpT-like NPA28_11195 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) NPA28_11200 PF13472 GDSL-like Lipase/Acylhydrolase family NPA28_11205 PF02630 SCO1/SenC NPA28_11210 PF10751 Protein of unknown function (DUF2535) NPA28_11215 PF00291 Pyridoxal-phosphate dependent enzyme NPA28_11215 PF00585 C-terminal regulatory domain of Threonine dehydratase NPA28_11220 PF08461 Ribonuclease R winged-helix domain NPA28_11220 PF00158 Sigma-54 interaction domain NPA28_11225 PF03006 Haemolysin-III related NPA28_11235 PF00186 Dihydrofolate reductase NPA28_11240 PF00303 Thymidylate synthase NPA28_11245 PF04608 Phosphatidylglycerophosphatase A NPA28_11250 PF14005 YpjP-like protein NPA28_11255 PF04445 Putative SAM-dependent methyltransferase NPA28_11260 PF06491 Disulphide isomerase NPA28_11265 PF00920 Dehydratase family NPA28_11270 PF13769 Virulence factor NPA28_11270 PF08712 Scaffold protein Nfu/NifU N terminal NPA28_11275 PF01966 HD domain NPA28_11280 PF00255 Glutathione peroxidase NPA28_11285 PF04204 Homoserine O-succinyltransferase NPA28_11290 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase NPA28_11290 PF00534 Glycosyl transferases group 1 NPA28_11300 PF00313 'Cold-shock' DNA-binding domain NPA28_11310 PF10819 Protein of unknown function (DUF2564) NPA28_11315 PF10782 Zinc-finger NPA28_11320 PF13456 Reverse transcriptase-like NPA28_11325 PF02592 Putative vitamin uptake transporter NPA28_11330 PF13456 Reverse transcriptase-like NPA28_11340 PF01367 5'-3' exonuclease, C-terminal SAM fold NPA28_11340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NPA28_11350 PF10752 Protein of unknown function (DUF2533) NPA28_11355 PF00350 Dynamin family NPA28_11365 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NPA28_11370 PF02797 Chalcone and stilbene synthases, C-terminal domain NPA28_11370 PF00195 Chalcone and stilbene synthases, N-terminal domain NPA28_11375 PF00860 Permease family NPA28_11380 PF00156 Phosphoribosyl transferase domain NPA28_11385 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NPA28_11390 PF03812 2-keto-3-deoxygluconate permease NPA28_11395 PF01081 KDPG and KHG aldolase NPA28_11400 PF00294 pfkB family carbohydrate kinase NPA28_11405 PF00356 Bacterial regulatory proteins, lacI family NPA28_11410 PF04962 KduI/IolB family NPA28_11420 PF13307 Helicase C-terminal domain NPA28_11430 PF14139 YpzG-like protein NPA28_11435 PF01170 Putative RNA methylase family UPF0020 NPA28_11435 PF02926 THUMP domain NPA28_11445 PF05103 DivIVA protein NPA28_11450 PF06908 YspA SLOG family NPA28_11455 PF11122 Inner spore coat protein D NPA28_11465 PF13482 RNase_H superfamily NPA28_11470 PF00270 DEAD/DEAH box helicase NPA28_11470 PF09369 Domain of unknown function (DUF1998) NPA28_11470 PF00271 Helicase conserved C-terminal domain NPA28_11475 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPA28_11485 PF14179 YppG-like protein NPA28_11490 PF14178 YppF-like protein NPA28_11495 PF08807 Bacterial domain of unknown function (DUF1798) NPA28_11500 PF17522 Family of unknown function (DUF5446) NPA28_11510 PF10720 Protein of unknown function (DUF2515) NPA28_11515 PF03838 Recombination protein U NPA28_11520 PF00912 Transglycosylase NPA28_11520 PF00905 Penicillin binding protein transpeptidase domain NPA28_11530 PF10576 Iron-sulfur binding domain of endonuclease III NPA28_11530 PF00633 Helix-hairpin-helix motif NPA28_11530 PF00730 HhH-GPD superfamily base excision DNA repair protein NPA28_11535 PF07261 Replication initiation and membrane attachment NPA28_11540 PF00152 tRNA synthetases class II (D, K and N) NPA28_11540 PF01336 OB-fold nucleic acid binding domain NPA28_11545 PF00155 Aminotransferase class I and II NPA28_11550 PF17881 Domain of unknown function (DUF5590) NPA28_11550 PF03413 Peptidase propeptide and YPEB domain NPA28_11555 PF14084 Protein of unknown function (DUF4264) NPA28_11560 PF00929 Exonuclease NPA28_11560 PF13307 Helicase C-terminal domain NPA28_11560 PF04851 Type III restriction enzyme, res subunit NPA28_11565 PF02261 Aspartate decarboxylase NPA28_11570 PF02569 Pantoate-beta-alanine ligase NPA28_11575 PF02548 Ketopantoate hydroxymethyltransferase NPA28_11580 PF02237 Biotin protein ligase C terminal domain NPA28_11580 PF03099 Biotin/lipoate A/B protein ligase family NPA28_11580 PF08279 HTH domain NPA28_11585 PF01743 Poly A polymerase head domain NPA28_11585 PF12627 Probable RNA and SrmB- binding site of polymerase A NPA28_11585 PF13735 tRNA nucleotidyltransferase domain 2 putative NPA28_11590 PF13439 Glycosyltransferase Family 4 NPA28_11590 PF00534 Glycosyl transferases group 1 NPA28_11595 PF02585 GlcNAc-PI de-N-acetylase NPA28_11600 PF02142 MGS-like domain NPA28_11605 PF05173 Dihydrodipicolinate reductase, C-terminus NPA28_11605 PF01113 Dihydrodipicolinate reductase, N-terminus NPA28_11610 PF03819 MazG nucleotide pyrophosphohydrolase domain NPA28_11615 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPA28_11615 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPA28_11620 PF09577 Sporulation protein YpjB (SpoYpjB) NPA28_11625 PF07187 Protein of unknown function (DUF1405) NPA28_11630 PF00032 Cytochrome b(C-terminal)/b6/petD NPA28_11630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NPA28_11635 PF00033 Cytochrome b/b6/petB NPA28_11640 PF00355 Rieske [2Fe-2S] domain NPA28_11645 PF10673 Protein of unknown function (DUF2487) NPA28_11650 PF08858 IDEAL domain NPA28_11650 PF08864 UPF0302 domain NPA28_11660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPA28_11665 PF02153 Prephenate dehydrogenase NPA28_11665 PF01842 ACT domain NPA28_11670 PF00155 Aminotransferase class I and II NPA28_11675 PF00290 Tryptophan synthase alpha chain NPA28_11680 PF00291 Pyridoxal-phosphate dependent enzyme NPA28_11685 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NPA28_11690 PF00218 Indole-3-glycerol phosphate synthase NPA28_11695 PF02885 Glycosyl transferase family, helical bundle domain NPA28_11695 PF00591 Glycosyl transferase family, a/b domain NPA28_11700 PF04715 Anthranilate synthase component I, N terminal region NPA28_11700 PF00425 chorismate binding enzyme NPA28_11705 PF07736 Chorismate mutase type I NPA28_11710 PF01761 3-dehydroquinate synthase NPA28_11715 PF01264 Chorismate synthase NPA28_11720 PF01739 CheR methyltransferase, SAM binding domain NPA28_11720 PF03705 CheR methyltransferase, all-alpha domain NPA28_11725 PF00334 Nucleoside diphosphate kinase NPA28_11730 PF00348 Polyprenyl synthetase NPA28_11735 PF01209 ubiE/COQ5 methyltransferase family NPA28_11740 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 NPA28_11745 PF02081 Tryptophan RNA-binding attenuator protein NPA28_11750 PF01227 GTP cyclohydrolase I NPA28_11755 PF00216 Bacterial DNA-binding protein NPA28_11760 PF09547 Stage IV sporulation protein A (spore_IV_A) NPA28_11770 PF10966 Protein of unknown function (DUF2768) NPA28_11775 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NPA28_11775 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NPA28_11780 PF01926 50S ribosome-binding GTPase NPA28_11780 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NPA28_11790 PF14045 YIEGIA protein NPA28_11800 PF14140 YpzI-like protein NPA28_11805 PF01070 FMN-dependent dehydrogenase NPA28_11810 PF00575 S1 RNA binding domain NPA28_11815 PF02224 Cytidylate kinase NPA28_11820 PF17313 Family of unknown function (DUF5359) NPA28_11825 PF12945 Flagellar protein YcgR NPA28_11825 PF07238 PilZ domain NPA28_11830 PF14620 YpeB sporulation NPA28_11830 PF03413 Peptidase propeptide and YPEB domain NPA28_11835 PF07486 Cell Wall Hydrolase NPA28_11835 PF01471 Putative peptidoglycan binding domain NPA28_11840 PF13367 PrsW family intramembrane metalloprotease NPA28_11850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NPA28_11850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NPA28_11855 PF05389 Negative regulator of genetic competence (MecA) NPA28_11860 PF00149 Calcineurin-like phosphoesterase NPA28_11865 PF10864 Protein of unknown function (DUF2663) NPA28_11870 PF01476 LysM domain NPA28_11875 PF02517 CPBP intramembrane metalloprotease NPA28_11880 PF00270 DEAD/DEAH box helicase NPA28_11880 PF00271 Helicase conserved C-terminal domain NPA28_11885 PF14493 Helix-turn-helix domain NPA28_11895 PF12822 ECF transporter, substrate-specific component NPA28_11900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPA28_11900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPA28_11900 PF01842 ACT domain NPA28_11905 PF01487 Type I 3-dehydroquinase NPA28_11915 PF08281 Sigma-70, region 4 NPA28_11915 PF04542 Sigma-70 region 2 NPA28_11920 PF00672 HAMP domain NPA28_11920 PF00989 PAS fold NPA28_11920 PF00512 His Kinase A (phospho-acceptor) domain NPA28_11920 PF18698 Histidine kinase sensor domain NPA28_11920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_11925 PF00486 Transcriptional regulatory protein, C terminal NPA28_11925 PF00072 Response regulator receiver domain NPA28_11930 PF01578 Cytochrome C assembly protein NPA28_11935 PF05140 ResB-like family NPA28_11940 PF00578 AhpC/TSA family NPA28_11945 PF00849 RNA pseudouridylate synthase NPA28_11945 PF01479 S4 domain NPA28_11950 PF07670 Nucleoside recognition NPA28_11955 PF07670 Nucleoside recognition NPA28_11960 PF07943 Penicillin-binding protein 5, C-terminal domain NPA28_11960 PF00768 D-alanyl-D-alanine carboxypeptidase NPA28_11965 PF13047 Protein of unknown function (DUF3907) NPA28_11970 PF04079 Segregation and condensation complex subunit ScpB NPA28_11975 PF02616 Segregation and condensation protein ScpA NPA28_11980 PF09680 Family of unknown function NPA28_11985 PF03745 Domain of unknown function (DUF309) NPA28_11990 PF00583 Acetyltransferase (GNAT) family NPA28_11995 PF00885 6,7-dimethyl-8-ribityllumazine synthase NPA28_12000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NPA28_12000 PF00925 GTP cyclohydrolase II NPA28_12005 PF00677 Lumazine binding domain NPA28_12010 PF01872 RibD C-terminal domain NPA28_12010 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPA28_12020 PF10502 Signal peptidase, peptidase S26 NPA28_12025 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) NPA28_12030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NPA28_12035 PF06207 Protein of unknown function (DUF1002) NPA28_12040 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NPA28_12040 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NPA28_12045 PF03323 Bacillus/Clostridium GerA spore germination protein NPA28_12050 PF14097 Stage V sporulation protein AE1 NPA28_12055 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NPA28_12060 PF07451 Stage V sporulation protein AD (SpoVAD) NPA28_12065 PF03862 SpoVAC/SpoVAEB sporulation membrane protein NPA28_12070 PF13782 Stage V sporulation protein AB NPA28_12075 PF12164 Stage V sporulation protein AA NPA28_12080 PF04542 Sigma-70 region 2 NPA28_12080 PF04539 Sigma-70 region 3 NPA28_12080 PF04545 Sigma-70, region 4 NPA28_12085 PF13581 Histidine kinase-like ATPase domain NPA28_12090 PF01740 STAS domain NPA28_12095 PF07943 Penicillin-binding protein 5, C-terminal domain NPA28_12095 PF00768 D-alanyl-D-alanine carboxypeptidase NPA28_12100 PF01048 Phosphorylase superfamily NPA28_12105 PF01676 Metalloenzyme superfamily NPA28_12110 PF02899 Phage integrase, N-terminal SAM-like domain NPA28_12110 PF00589 Phage integrase family NPA28_12115 PF14004 Protein of unknown function (DUF4227) NPA28_12120 PF01475 Ferric uptake regulator family NPA28_12125 PF01944 Stage II sporulation protein M NPA28_12135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPA28_12135 PF00390 Malic enzyme, N-terminal domain NPA28_12135 PF03949 Malic enzyme, NAD binding domain NPA28_12140 PF03553 Na+/H+ antiporter family NPA28_12145 PF10415 Fumarase C C-terminus NPA28_12145 PF00206 Lyase NPA28_12150 PF00710 Asparaginase, N-terminal NPA28_12150 PF17763 Glutaminase/Asparaginase C-terminal domain NPA28_12155 PF01381 Helix-turn-helix NPA28_12165 PF00293 NUDIX domain NPA28_12170 PF13072 Mother cell inhibitor of FtsZ NPA28_12175 PF00248 Aldo/keto reductase family NPA28_12180 PF13025 Protein of unknown function (DUF3886) NPA28_12185 PF12146 Serine aminopeptidase, S33 NPA28_12190 PF10827 Protein of unknown function (DUF2552) NPA28_12195 PF01521 Iron-sulphur cluster biosynthesis NPA28_12200 PF13673 Acetyltransferase (GNAT) domain NPA28_12200 PF04229 GrpB protein NPA28_12210 PF00583 Acetyltransferase (GNAT) family NPA28_12215 PF08863 YolD-like protein NPA28_12220 PF00817 impB/mucB/samB family NPA28_12220 PF11799 impB/mucB/samB family C-terminal domain NPA28_12225 PF14164 YqzH-like protein NPA28_12230 PF07690 Major Facilitator Superfamily NPA28_12245 PF00485 Phosphoribulokinase / Uridine kinase family NPA28_12250 PF00291 Pyridoxal-phosphate dependent enzyme NPA28_12255 PF00106 short chain dehydrogenase NPA28_12260 PF00753 Metallo-beta-lactamase superfamily NPA28_12265 PF03807 NADP oxidoreductase coenzyme F420-dependent NPA28_12265 PF14748 Pyrroline-5-carboxylate reductase dimerisation NPA28_12270 PF01546 Peptidase family M20/M25/M40 NPA28_12275 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NPA28_12280 PF12146 Serine aminopeptidase, S33 NPA28_12285 PF00471 Ribosomal protein L33 NPA28_12290 PF12706 Beta-lactamase superfamily domain NPA28_12295 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NPA28_12295 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NPA28_12300 PF13021 Domain of unknown function (DUF3885) NPA28_12305 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NPA28_12305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NPA28_12310 PF00817 impB/mucB/samB family NPA28_12310 PF11799 impB/mucB/samB family C-terminal domain NPA28_12310 PF11798 IMS family HHH motif NPA28_12320 PF02096 60Kd inner membrane protein NPA28_12325 PF09844 Uncharacterized conserved protein (COG2071) NPA28_12330 PF07687 Peptidase dimerisation domain NPA28_12330 PF01546 Peptidase family M20/M25/M40 NPA28_12335 PF01039 Carboxyl transferase domain NPA28_12350 PF03734 L,D-transpeptidase catalytic domain NPA28_12355 PF06081 Aromatic acid exporter family member 1 NPA28_12355 PF11728 Putative aromatic acid exporter C-terminal domain NPA28_12360 PF00005 ABC transporter NPA28_12365 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_12370 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPA28_12375 PF06491 Disulphide isomerase NPA28_12380 PF00781 Diacylglycerol kinase catalytic domain NPA28_12385 PF07690 Major Facilitator Superfamily NPA28_12390 PF06445 GyrI-like small molecule binding domain NPA28_12390 PF13411 MerR HTH family regulatory protein NPA28_12395 PF00364 Biotin-requiring enzyme NPA28_12395 PF02817 e3 binding domain NPA28_12395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NPA28_12400 PF02779 Transketolase, pyrimidine binding domain NPA28_12400 PF02780 Transketolase, C-terminal domain NPA28_12405 PF00676 Dehydrogenase E1 component NPA28_12410 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_12410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NPA28_12415 PF00871 Acetokinase family NPA28_12420 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NPA28_12420 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NPA28_12425 PF01515 Phosphate acetyl/butaryl transferase NPA28_12430 PF00989 PAS fold NPA28_12430 PF02954 Bacterial regulatory protein, Fis family NPA28_12430 PF00158 Sigma-54 interaction domain NPA28_12435 PF11118 Protein of unknown function (DUF2627) NPA28_12445 PF03972 MmgE/PrpD family NPA28_12450 PF00285 Citrate synthase, C-terminal domain NPA28_12455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPA28_12455 PF02770 Acyl-CoA dehydrogenase, middle domain NPA28_12455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPA28_12460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NPA28_12460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NPA28_12465 PF02803 Thiolase, C-terminal domain NPA28_12465 PF00108 Thiolase, N-terminal domain NPA28_12470 PF03009 Glycerophosphoryl diester phosphodiesterase family NPA28_12475 PF01520 N-acetylmuramoyl-L-alanine amidase NPA28_12490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NPA28_12495 PF08769 Sporulation initiation factor Spo0A C terminal NPA28_12495 PF00072 Response regulator receiver domain NPA28_12500 PF17820 PDZ domain NPA28_12500 PF05580 SpoIVB peptidase S55 NPA28_12505 PF13476 AAA domain NPA28_12510 PF01316 Arginine repressor, DNA binding domain NPA28_12510 PF02863 Arginine repressor, C-terminal domain NPA28_12515 PF01728 FtsJ-like methyltransferase NPA28_12515 PF01479 S4 domain NPA28_12520 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NPA28_12520 PF02779 Transketolase, pyrimidine binding domain NPA28_12520 PF02780 Transketolase, C-terminal domain NPA28_12525 PF00348 Polyprenyl synthetase NPA28_12530 PF02609 Exonuclease VII small subunit NPA28_12535 PF13742 OB-fold nucleic acid binding domain NPA28_12535 PF02601 Exonuclease VII, large subunit NPA28_12540 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NPA28_12540 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NPA28_12545 PF01029 NusB family NPA28_12550 PF03780 Asp23 family, cell envelope-related function NPA28_12555 PF02785 Biotin carboxylase C-terminal domain NPA28_12555 PF00289 Biotin carboxylase, N-terminal domain NPA28_12555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NPA28_12560 PF00364 Biotin-requiring enzyme NPA28_12565 PF12685 SpoIIIAH-like protein NPA28_12575 PF09581 Stage III sporulation protein AF (Spore_III_AF) NPA28_12580 PF09546 Stage III sporulation protein AE (spore_III_AE) NPA28_12585 PF06686 Stage III sporulation protein AC/AD protein family NPA28_12590 PF06686 Stage III sporulation protein AC/AD protein family NPA28_12595 PF09548 Stage III sporulation protein AB (spore_III_AB) NPA28_12605 PF10942 Protein of unknown function (DUF2619) NPA28_12610 PF09285 Elongation factor P, C-terminal NPA28_12610 PF08207 Elongation factor P (EF-P) KOW-like domain NPA28_12610 PF01132 Elongation factor P (EF-P) OB domain NPA28_12615 PF01321 Creatinase/Prolidase N-terminal domain NPA28_12615 PF00557 Metallopeptidase family M24 NPA28_12620 PF01220 Dehydroquinase class II NPA28_12625 PF11085 Conserved membrane protein YqhR NPA28_12630 PF07136 Protein of unknown function (DUF1385) NPA28_12640 PF01734 Patatin-like phospholipase NPA28_12645 PF02742 Iron dependent repressor, metal binding and dimerisation domain NPA28_12645 PF01325 Iron dependent repressor, N-terminal DNA binding domain NPA28_12650 PF03099 Biotin/lipoate A/B protein ligase family NPA28_12655 PF00581 Rhodanese-like domain NPA28_12660 PF02347 Glycine cleavage system P-protein NPA28_12665 PF02347 Glycine cleavage system P-protein NPA28_12670 PF01571 Aminomethyltransferase folate-binding domain NPA28_12670 PF08669 Glycine cleavage T-protein C-terminal barrel domain NPA28_12675 PF00271 Helicase conserved C-terminal domain NPA28_12675 PF00176 SNF2 family N-terminal domain NPA28_12680 PF11079 Bacterial protein YqhG of unknown function NPA28_12685 PF08671 Anti-repressor SinI NPA28_12690 PF01381 Helix-turn-helix NPA28_12690 PF08671 Anti-repressor SinI NPA28_12695 PF12389 Camelysin metallo-endopeptidase NPA28_12710 PF13028 Protein of unknown function (DUF3889) NPA28_12715 PF14038 YqzE-like protein NPA28_12720 PF14173 ComG operon protein 7 NPA28_12725 PF15980 Putative Competence protein ComGF NPA28_12735 PF07963 Prokaryotic N-terminal methylation motif NPA28_12740 PF07963 Prokaryotic N-terminal methylation motif NPA28_12745 PF00482 Type II secretion system (T2SS), protein F NPA28_12750 PF00437 Type II/IV secretion system protein NPA28_12755 PF00571 CBS domain NPA28_12760 PF01544 CorA-like Mg2+ transporter protein NPA28_12770 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain NPA28_12770 PF01740 STAS domain NPA28_12780 PF03960 ArsC family NPA28_12785 PF11117 Protein of unknown function (DUF2626) NPA28_12790 PF00753 Metallo-beta-lactamase superfamily NPA28_12795 PF10958 Protein of unknown function (DUF2759) NPA28_12800 PF01910 Thiamine-binding protein NPA28_12810 PF00246 Zinc carboxypeptidase NPA28_12815 PF00884 Sulfatase NPA28_12820 PF00480 ROK family NPA28_12825 PF06014 Bacterial protein of unknown function (DUF910) NPA28_12830 PF01694 Rhomboid family NPA28_12840 PF01812 5-formyltetrahydrofolate cyclo-ligase family NPA28_12845 PF00471 Ribosomal protein L33 NPA28_12850 PF13439 Glycosyltransferase Family 4 NPA28_12850 PF00534 Glycosyl transferases group 1 NPA28_12870 PF00005 ABC transporter NPA28_12875 PF00005 ABC transporter NPA28_12880 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_12885 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_12890 PF12849 PBP superfamily domain NPA28_12895 PF03717 Penicillin-binding Protein dimerisation domain NPA28_12895 PF00905 Penicillin binding protein transpeptidase domain NPA28_12900 PF07690 Major Facilitator Superfamily NPA28_12905 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NPA28_12905 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NPA28_12910 PF04306 Protein of unknown function (DUF456) NPA28_12915 PF06691 Protein of unknown function (DUF1189) NPA28_12925 PF04551 GcpE protein NPA28_12940 PF01475 Ferric uptake regulator family NPA28_12945 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPA28_12945 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPA28_12950 PF11116 Protein of unknown function (DUF2624) NPA28_12955 PF01261 Xylose isomerase-like TIM barrel NPA28_12960 PF00270 DEAD/DEAH box helicase NPA28_12960 PF00271 Helicase conserved C-terminal domain NPA28_12965 PF14181 YqfQ-like protein NPA28_12970 PF02401 LytB protein NPA28_12975 PF01784 NIF3 (NGG1p interacting factor 3) NPA28_12980 PF04816 tRNA (adenine(22)-N(1))-methyltransferase NPA28_12985 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NPA28_12990 PF03979 Sigma-70 factor, region 1.1 NPA28_12990 PF00140 Sigma-70 factor, region 1.2 NPA28_12990 PF04542 Sigma-70 region 2 NPA28_12990 PF04539 Sigma-70 region 3 NPA28_12990 PF04545 Sigma-70, region 4 NPA28_12995 PF08275 DNA primase catalytic core, N-terminal domain NPA28_12995 PF01807 CHC2 zinc finger NPA28_12995 PF10410 DnaB-helicase binding domain of primase NPA28_13000 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NPA28_13005 PF03618 Kinase/pyrophosphorylase NPA28_13010 PF00571 CBS domain NPA28_13010 PF08279 HTH domain NPA28_13015 PF02092 Glycyl-tRNA synthetase beta subunit NPA28_13020 PF02091 Glycyl-tRNA synthetase alpha subunit NPA28_13025 PF02565 Recombination protein O C terminal NPA28_13025 PF11967 Recombination protein O N terminal NPA28_13030 PF14006 YqzL-like protein NPA28_13035 PF07650 KH domain NPA28_13035 PF01926 50S ribosome-binding GTPase NPA28_13040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPA28_13045 PF01219 Prokaryotic diacylglycerol kinase NPA28_13050 PF02130 Uncharacterized protein family UPF0054 NPA28_13055 PF07698 7TM receptor with intracellular HD hydrolase NPA28_13055 PF07697 7TM-HD extracellular NPA28_13055 PF01966 HD domain NPA28_13060 PF02562 PhoH-like protein NPA28_13065 PF06898 Putative stage IV sporulation protein YqfD NPA28_13070 PF07873 YabP family NPA28_13080 PF12127 SigmaW regulon antibacterial NPA28_13085 PF01957 NfeD-like C-terminal, partner-binding NPA28_13085 PF01972 Serine dehydrogenase proteinase NPA28_13090 PF09424 Yqey-like protein NPA28_13095 PF01165 Ribosomal protein S21 NPA28_13100 PF02690 Na+/Pi-cotransporter NPA28_13105 PF01938 TRAM domain NPA28_13105 PF00919 Uncharacterized protein family UPF0004 NPA28_13105 PF04055 Radical SAM superfamily NPA28_13110 PF04452 RNA methyltransferase NPA28_13120 PF00226 DnaJ domain NPA28_13120 PF01556 DnaJ C terminal domain NPA28_13120 PF00684 DnaJ central domain NPA28_13125 PF00012 Hsp70 protein NPA28_13130 PF01025 GrpE NPA28_13135 PF01628 HrcA protein C terminal domain NPA28_13140 PF06969 HemN C-terminal domain NPA28_13140 PF04055 Radical SAM superfamily NPA28_13145 PF00679 Elongation factor G C-terminus NPA28_13145 PF00009 Elongation factor Tu GTP binding domain NPA28_13145 PF03144 Elongation factor Tu domain 2 NPA28_13145 PF06421 GTP-binding protein LepA C-terminus NPA28_13150 PF12438 Protein of unknown function (DUF3679) NPA28_13155 PF07454 Stage II sporulation protein P (SpoIIP) NPA28_13160 PF03418 Germination protease NPA28_13165 PF01649 Ribosomal protein S20 NPA28_13170 PF06144 DNA polymerase III, delta subunit NPA28_13180 PF14141 YqzM-like protein NPA28_13185 PF03772 Competence protein NPA28_13185 PF13567 Domain of unknown function (DUF4131) NPA28_13185 PF00753 Metallo-beta-lactamase superfamily NPA28_13190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NPA28_13195 PF10531 SLBB domain NPA28_13200 PF03807 NADP oxidoreductase coenzyme F420-dependent NPA28_13200 PF14748 Pyrroline-5-carboxylate reductase dimerisation NPA28_13205 PF13649 Methyltransferase domain NPA28_13215 PF01966 HD domain NPA28_13220 PF01467 Cytidylyltransferase-like NPA28_13225 PF01985 CRS1 / YhbY (CRM) domain NPA28_13230 PF01488 Shikimate / quinate 5-dehydrogenase NPA28_13230 PF08501 Shikimate dehydrogenase substrate binding domain NPA28_13230 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NPA28_13235 PF01926 50S ribosome-binding GTPase NPA28_13245 PF08970 Sporulation inhibitor A NPA28_13255 PF00657 GDSL-like Lipase/Acylhydrolase NPA28_13260 PF01510 N-acetylmuramoyl-L-alanine amidase NPA28_13260 PF01471 Putative peptidoglycan binding domain NPA28_13265 PF09335 SNARE associated Golgi protein NPA28_13270 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NPA28_13270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NPA28_13280 PF14040 Deoxyribonuclease NucA/NucB NPA28_13285 PF04542 Sigma-70 region 2 NPA28_13285 PF04545 Sigma-70, region 4 NPA28_13300 PF01451 Low molecular weight phosphotyrosine protein phosphatase NPA28_13305 PF01758 Sodium Bile acid symporter family NPA28_13310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_13315 PF01022 Bacterial regulatory protein, arsR family NPA28_13335 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_13335 PF00107 Zinc-binding dehydrogenase NPA28_13345 PF04237 YjbR NPA28_13350 PF01872 RibD C-terminal domain NPA28_13355 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_13355 PF13176 Tetratricopeptide repeat NPA28_13360 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH NPA28_13360 PF04740 LXG domain of WXG superfamily NPA28_13370 PF01471 Putative peptidoglycan binding domain NPA28_13370 PF01476 LysM domain NPA28_13370 PF01510 N-acetylmuramoyl-L-alanine amidase NPA28_13375 PF05105 Bacteriophage holin family NPA28_13390 PF01177 Asp/Glu/Hydantoin racemase NPA28_13415 PF06114 IrrE N-terminal-like domain NPA28_13430 PF06146 Phosphate-starvation-inducible E NPA28_13435 PF00512 His Kinase A (phospho-acceptor) domain NPA28_13440 PF00486 Transcriptional regulatory protein, C terminal NPA28_13440 PF00072 Response regulator receiver domain NPA28_13445 PF04235 Protein of unknown function (DUF418) NPA28_13450 PF00583 Acetyltransferase (GNAT) family NPA28_13455 PF03816 Cell envelope-related transcriptional attenuator domain NPA28_13460 PF01522 Polysaccharide deacetylase NPA28_13470 PF00512 His Kinase A (phospho-acceptor) domain NPA28_13470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_13475 PF00072 Response regulator receiver domain NPA28_13475 PF00486 Transcriptional regulatory protein, C terminal NPA28_13485 PF01337 Barstar (barnase inhibitor) NPA28_13490 PF00545 ribonuclease NPA28_13505 PF00005 ABC transporter NPA28_13510 PF00392 Bacterial regulatory proteins, gntR family NPA28_13520 PF09680 Family of unknown function NPA28_13525 PF10823 Protein of unknown function (DUF2568) NPA28_13545 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment NPA28_13585 PF01965 DJ-1/PfpI family NPA28_13590 PF08244 Glycosyl hydrolases family 32 C terminal NPA28_13590 PF00251 Glycosyl hydrolases family 32 N-terminal domain NPA28_13595 PF03613 PTS system mannose/fructose/sorbose family IID component NPA28_13600 PF03609 PTS system sorbose-specific iic component NPA28_13605 PF03830 PTS system sorbose subfamily IIB component NPA28_13610 PF03610 PTS system fructose IIA component NPA28_13615 PF00158 Sigma-54 interaction domain NPA28_13615 PF00874 PRD domain NPA28_13615 PF03610 PTS system fructose IIA component NPA28_13625 PF01810 LysE type translocator NPA28_13630 PF01978 Sugar-specific transcriptional regulator TrmB NPA28_13630 PF11495 Archaeal transcriptional regulator TrmB NPA28_13635 PF08281 Sigma-70, region 4 NPA28_13635 PF04542 Sigma-70 region 2 NPA28_13640 PF11738 Protein of unknown function (DUF3298) NPA28_13640 PF13739 Deacetylase PdaC NPA28_13645 PF01757 Acyltransferase family NPA28_13650 PF14145 YrhK-like protein NPA28_13655 PF00175 Oxidoreductase NAD-binding domain NPA28_13655 PF00667 FAD binding domain NPA28_13655 PF00258 Flavodoxin NPA28_13655 PF00067 Cytochrome P450 NPA28_13660 PF00440 Bacterial regulatory proteins, tetR family NPA28_13660 PF16295 Tetracyclin repressor-like, C-terminal domain NPA28_13665 PF08241 Methyltransferase domain NPA28_13675 PF09501 Probable sporulation protein (Bac_small_yrzI) NPA28_13680 PF01226 Formate/nitrite transporter NPA28_13685 PF10057 Uncharacterized conserved protein (DUF2294) NPA28_13690 PF00384 Molybdopterin oxidoreductase NPA28_13690 PF00037 4Fe-4S binding domain NPA28_13690 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NPA28_13690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NPA28_13690 PF01568 Molydopterin dinucleotide binding domain NPA28_13695 PF07849 Protein of unknown function (DUF1641) NPA28_13700 PF14143 YrhC-like protein NPA28_13705 PF01053 Cys/Met metabolism PLP-dependent enzyme NPA28_13710 PF00291 Pyridoxal-phosphate dependent enzyme NPA28_13715 PF01048 Phosphorylase superfamily NPA28_13720 PF13649 Methyltransferase domain NPA28_13725 PF10750 Protein of unknown function (DUF2536) NPA28_13730 PF07423 Domain of unknown function (DUF1510) NPA28_13735 PF03717 Penicillin-binding Protein dimerisation domain NPA28_13735 PF00905 Penicillin binding protein transpeptidase domain NPA28_13740 PF01272 Transcription elongation factor, GreA/GreB, C-term NPA28_13740 PF03449 Transcription elongation factor, N-terminal NPA28_13745 PF00485 Phosphoribulokinase / Uridine kinase family NPA28_13750 PF01136 Peptidase family U32 NPA28_13750 PF16325 Peptidase family U32 C-terminal domain NPA28_13755 PF01136 Peptidase family U32 NPA28_13760 PF01596 O-methyltransferase NPA28_13765 PF02618 YceG-like family NPA28_13770 PF06949 Protein of unknown function (DUF1292) NPA28_13775 PF03652 Holliday junction resolvase NPA28_13780 PF06135 IreB regulatory phosphoprotein NPA28_13785 PF02272 DHHA1 domain NPA28_13785 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPA28_13785 PF01411 tRNA synthetases class II (A) NPA28_13790 PF01594 AI-2E family transporter NPA28_13795 PF00005 ABC transporter NPA28_13800 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPA28_13805 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_13810 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_13815 PF13056 Protein of unknown function (DUF3918) NPA28_13825 PF05239 PRC-barrel domain NPA28_13830 PF14490 Helix-hairpin-helix containing domain NPA28_13830 PF13538 UvrD-like helicase C-terminal domain NPA28_13830 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NPA28_13835 PF07719 Tetratricopeptide repeat NPA28_13835 PF13181 Tetratricopeptide repeat NPA28_13845 PF00266 Aminotransferase class-V NPA28_13850 PF02082 Transcriptional regulator NPA28_13855 PF12002 MgsA AAA+ ATPase C terminal NPA28_13855 PF05496 Holliday junction DNA helicase RuvB P-loop domain NPA28_13855 PF16193 AAA C-terminal domain NPA28_13860 PF00899 ThiF family NPA28_13870 PF00152 tRNA synthetases class II (D, K and N) NPA28_13870 PF01336 OB-fold nucleic acid binding domain NPA28_13870 PF02938 GAD domain NPA28_13875 PF03129 Anticodon binding domain NPA28_13875 PF13393 Histidyl-tRNA synthetase NPA28_13880 PF17449 Uncharacterized YrzK-like NPA28_13885 PF01520 N-acetylmuramoyl-L-alanine amidase NPA28_13885 PF08239 Bacterial SH3 domain NPA28_13890 PF02580 D-Tyr-tRNA(Tyr) deacylase NPA28_13895 PF04607 Region found in RelA / SpoT proteins NPA28_13895 PF02824 TGS domain NPA28_13895 PF13291 ACT domain NPA28_13900 PF00156 Phosphoribosyl transferase domain NPA28_13905 PF01368 DHH family NPA28_13905 PF02272 DHHA1 domain NPA28_13905 PF17768 RecJ OB domain NPA28_13905 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NPA28_13910 PF06305 Lipopolysaccharide assembly protein A domain NPA28_13915 PF02080 TrkA-C domain NPA28_13920 PF07549 SecD/SecF GG Motif NPA28_13920 PF02355 Protein export membrane protein NPA28_13925 PF13797 Post-transcriptional regulator NPA28_13930 PF01943 Polysaccharide biosynthesis protein NPA28_13930 PF14667 Polysaccharide biosynthesis C-terminal domain NPA28_13935 PF04239 Protein of unknown function (DUF421) NPA28_13940 PF12670 Protein of unknown function (DUF3792) NPA28_13945 PF02699 Preprotein translocase subunit NPA28_13950 PF01702 Queuine tRNA-ribosyltransferase NPA28_13955 PF02547 Queuosine biosynthesis protein NPA28_13960 PF11146 Protein of unknown function (DUF2905) NPA28_13965 PF17864 RuvB AAA lid domain NPA28_13965 PF05491 RuvB C-terminal winged helix domain NPA28_13965 PF05496 Holliday junction DNA helicase RuvB P-loop domain NPA28_13970 PF07499 RuvA, C-terminal domain NPA28_13970 PF01330 RuvA N terminal domain NPA28_13975 PF08977 Bypass of Forespore C, N terminal NPA28_13975 PF08955 BofC C-terminal domain NPA28_13980 PF07690 Major Facilitator Superfamily NPA28_13985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPA28_13985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPA28_14005 PF01235 Sodium:alanine symporter family NPA28_14010 PF01709 Transcriptional regulator NPA28_14015 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NPA28_14020 PF01476 LysM domain NPA28_14025 PF02445 Quinolinate synthetase A protein NPA28_14030 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NPA28_14030 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NPA28_14035 PF02910 Fumarate reductase flavoprotein C-term NPA28_14035 PF00890 FAD binding domain NPA28_14040 PF00266 Aminotransferase class-V NPA28_14045 PF02829 3H domain NPA28_14045 PF08279 HTH domain NPA28_14050 PF00800 Prephenate dehydratase NPA28_14050 PF01842 ACT domain NPA28_14055 PF01842 ACT domain NPA28_14060 PF01018 GTP1/OBG NPA28_14060 PF09269 Domain of unknown function (DUF1967) NPA28_14060 PF01926 50S ribosome-binding GTPase NPA28_14065 PF14682 Sporulation initiation phospho-transferase B, C-terminal NPA28_14065 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NPA28_14075 PF01016 Ribosomal L27 protein NPA28_14080 PF04327 Cysteine protease Prp NPA28_14085 PF00829 Ribosomal prokaryotic L21 protein NPA28_14090 PF02163 Peptidase family M50 NPA28_14095 PF01551 Peptidase family M23 NPA28_14100 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NPA28_14105 PF03775 Septum formation inhibitor MinC, C-terminal domain NPA28_14110 PF04093 rod shape-determining protein MreD NPA28_14115 PF04085 rod shape-determining protein MreC NPA28_14125 PF00633 Helix-hairpin-helix motif NPA28_14125 PF04002 RadC-like JAB domain NPA28_14130 PF02545 Maf-like protein NPA28_14135 PF05036 Sporulation related domain NPA28_14140 PF01478 Type IV leader peptidase family NPA28_14140 PF06750 Bacterial Peptidase A24 N-terminal domain NPA28_14145 PF02875 Mur ligase family, glutamate ligase domain NPA28_14145 PF08245 Mur ligase middle domain NPA28_14150 PF08264 Anticodon-binding domain of tRNA NPA28_14150 PF00133 tRNA synthetases class I (I, L, M and V) NPA28_14150 PF10458 Valyl tRNA synthetase tRNA binding arm NPA28_14165 PF01476 LysM domain NPA28_14170 PF00202 Aminotransferase class-III NPA28_14175 PF00490 Delta-aminolevulinic acid dehydratase NPA28_14180 PF02602 Uroporphyrinogen-III synthase HemD NPA28_14185 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NPA28_14185 PF03900 Porphobilinogen deaminase, C-terminal domain NPA28_14190 PF01578 Cytochrome C assembly protein NPA28_14195 PF01488 Shikimate / quinate 5-dehydrogenase NPA28_14195 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NPA28_14195 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NPA28_14205 PF01926 50S ribosome-binding GTPase NPA28_14210 PF02190 ATP-dependent protease La (LON) substrate-binding domain NPA28_14210 PF00004 ATPase family associated with various cellular activities (AAA) NPA28_14210 PF05362 Lon protease (S16) C-terminal proteolytic domain NPA28_14215 PF00004 ATPase family associated with various cellular activities (AAA) NPA28_14215 PF05362 Lon protease (S16) C-terminal proteolytic domain NPA28_14220 PF07724 AAA domain (Cdc48 subfamily) NPA28_14220 PF10431 C-terminal, D2-small domain, of ClpB protein NPA28_14220 PF06689 ClpX C4-type zinc finger NPA28_14225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NPA28_14225 PF05697 Bacterial trigger factor protein (TF) NPA28_14225 PF05698 Bacterial trigger factor protein (TF) C-terminus NPA28_14235 PF00694 Aconitase C-terminal domain NPA28_14240 PF00330 Aconitase family (aconitate hydratase) NPA28_14245 PF00180 Isocitrate/isopropylmalate dehydrogenase NPA28_14250 PF00682 HMGL-like NPA28_14250 PF08502 LeuA allosteric (dimerisation) domain NPA28_14255 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NPA28_14255 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NPA28_14260 PF10369 Small subunit of acetolactate synthase NPA28_14260 PF01842 ACT domain NPA28_14265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPA28_14265 PF00205 Thiamine pyrophosphate enzyme, central domain NPA28_14265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NPA28_14275 PF00583 Acetyltransferase (GNAT) family NPA28_14285 PF09557 Domain of unknown function (DUF2382) NPA28_14285 PF11181 Heat induced stress protein YflT NPA28_14295 PF12850 Calcineurin-like phosphoesterase superfamily domain NPA28_14300 PF01725 Ham1 family NPA28_14305 PF03725 3' exoribonuclease family, domain 2 NPA28_14305 PF01138 3' exoribonuclease family, domain 1 NPA28_14310 PF10646 Sporulation and spore germination NPA28_14315 PF01177 Asp/Glu/Hydantoin racemase NPA28_14320 PF01047 MarR family NPA28_14325 PF00196 Bacterial regulatory proteins, luxR family NPA28_14330 PF03061 Thioesterase superfamily NPA28_14335 PF13085 2Fe-2S iron-sulfur cluster binding domain NPA28_14335 PF13183 4Fe-4S dicluster domain NPA28_14340 PF00890 FAD binding domain NPA28_14340 PF02910 Fumarate reductase flavoprotein C-term NPA28_14345 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NPA28_14350 PF10702 Protein of unknown function (DUF2507) NPA28_14355 PF13840 ACT domain NPA28_14355 PF01842 ACT domain NPA28_14355 PF00696 Amino acid kinase family NPA28_14360 PF02151 UvrB/uvrC motif NPA28_14360 PF08459 UvrC Helix-hairpin-helix N-terminal NPA28_14360 PF01541 GIY-YIG catalytic domain NPA28_14365 PF00085 Thioredoxin NPA28_14370 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NPA28_14375 PF00766 Electron transfer flavoprotein FAD-binding domain NPA28_14375 PF01012 Electron transfer flavoprotein domain NPA28_14380 PF01012 Electron transfer flavoprotein domain NPA28_14385 PF00378 Enoyl-CoA hydratase/isomerase NPA28_14390 PF00440 Bacterial regulatory proteins, tetR family NPA28_14390 PF08359 YsiA-like protein, C-terminal region NPA28_14395 PF00501 AMP-binding enzyme NPA28_14395 PF13193 AMP-binding enzyme C-terminal domain NPA28_14400 PF03994 Domain of Unknown Function (DUF350) NPA28_14405 PF00488 MutS domain V NPA28_14405 PF01713 Smr domain NPA28_14410 PF14791 DNA polymerase beta thumb NPA28_14410 PF14716 Helix-hairpin-helix domain NPA28_14410 PF02811 PHP domain NPA28_14415 PF02674 Colicin V production protein NPA28_14420 PF05164 Cell division protein ZapA NPA28_14425 PF11858 Domain of unknown function (DUF3378) NPA28_14425 PF01351 Ribonuclease HII NPA28_14430 PF03483 B3/4 domain NPA28_14430 PF03484 tRNA synthetase B5 domain NPA28_14430 PF03147 Ferredoxin-fold anticodon binding domain NPA28_14430 PF01588 Putative tRNA binding domain NPA28_14430 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NPA28_14435 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NPA28_14435 PF01409 tRNA synthetases class II core domain (F) NPA28_14445 PF08032 RNA 2'-O ribose methyltransferase substrate binding NPA28_14445 PF00588 SpoU rRNA Methylase family NPA28_14450 PF14098 Small, acid-soluble spore protein I NPA28_14455 PF13556 PucR C-terminal helix-turn-helix domain NPA28_14455 PF17853 GGDEF-like domain NPA28_14455 PF05651 Putative sugar diacid recognition NPA28_14460 PF01565 FAD binding domain NPA28_14460 PF02913 FAD linked oxidases, C-terminal domain NPA28_14465 PF02754 Cysteine-rich domain NPA28_14465 PF13183 4Fe-4S dicluster domain NPA28_14470 PF12681 Glyoxalase-like domain NPA28_14475 PF13722 5TM C-terminal transporter carbon starvation CstA NPA28_14475 PF02554 Carbon starvation protein CstA NPA28_14490 PF03551 Transcriptional regulator PadR-like family NPA28_14495 PF06964 Alpha-L-arabinofuranosidase C-terminal domain NPA28_14500 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_14505 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_14510 PF01547 Bacterial extracellular solute-binding protein NPA28_14515 PF13685 Iron-containing alcohol dehydrogenase NPA28_14520 PF13344 Haloacid dehalogenase-like hydrolase NPA28_14525 PF00596 Class II Aldolase and Adducin N-terminal domain NPA28_14530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPA28_14530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPA28_14535 PF11762 L-arabinose isomerase C-terminal domain NPA28_14535 PF02610 L-arabinose isomerase NPA28_14540 PF04616 Glycosyl hydrolases family 43 NPA28_14545 PF05343 M42 glutamyl aminopeptidase NPA28_14555 PF06961 Protein of unknown function (DUF1294) NPA28_14560 PF00453 Ribosomal protein L20 NPA28_14565 PF01632 Ribosomal protein L35 NPA28_14570 PF00707 Translation initiation factor IF-3, C-terminal domain NPA28_14570 PF05198 Translation initiation factor IF-3, N-terminal domain NPA28_14585 PF04172 LrgB-like family NPA28_14590 PF03788 LrgA family NPA28_14595 PF00072 Response regulator receiver domain NPA28_14595 PF04397 LytTr DNA-binding domain NPA28_14600 PF06580 Histidine kinase NPA28_14600 PF07694 5TMR of 5TMR-LYT NPA28_14600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_14605 PF13419 Haloacid dehalogenase-like hydrolase NPA28_14610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPA28_14610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPA28_14610 PF02824 TGS domain NPA28_14610 PF03129 Anticodon binding domain NPA28_14615 PF08812 YtxC-like family NPA28_14620 PF09335 SNARE associated Golgi protein NPA28_14625 PF01695 IstB-like ATP binding protein NPA28_14625 PF07319 Primosomal protein DnaI N-terminus NPA28_14630 PF07261 Replication initiation and membrane attachment NPA28_14635 PF03477 ATP cone domain NPA28_14640 PF02675 S-adenosylmethionine decarboxylase NPA28_14645 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NPA28_14645 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NPA28_14650 PF01638 HxlR-like helix-turn-helix NPA28_14655 PF07690 Major Facilitator Superfamily NPA28_14660 PF00248 Aldo/keto reductase family NPA28_14665 PF01121 Dephospho-CoA kinase NPA28_14675 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NPA28_14675 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NPA28_14675 PF06827 Zinc finger found in FPG and IleRS NPA28_14680 PF00476 DNA polymerase family A NPA28_14680 PF01367 5'-3' exonuclease, C-terminal SAM fold NPA28_14680 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NPA28_14685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_14685 PF00989 PAS fold NPA28_14685 PF16736 Single Cache-like NPA28_14685 PF00512 His Kinase A (phospho-acceptor) domain NPA28_14690 PF00072 Response regulator receiver domain NPA28_14690 PF00486 Transcriptional regulatory protein, C terminal NPA28_14695 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NPA28_14695 PF00056 lactate/malate dehydrogenase, NAD binding domain NPA28_14700 PF00180 Isocitrate/isopropylmalate dehydrogenase NPA28_14705 PF00285 Citrate synthase, C-terminal domain NPA28_14710 PF04284 Protein of unknown function (DUF441) NPA28_14715 PF01594 AI-2E family transporter NPA28_14720 PF04186 FxsA cytoplasmic membrane protein NPA28_14725 PF00391 PEP-utilising enzyme, mobile domain NPA28_14725 PF00224 Pyruvate kinase, barrel domain NPA28_14725 PF02887 Pyruvate kinase, alpha/beta domain NPA28_14730 PF00365 Phosphofructokinase NPA28_14735 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NPA28_14740 PF01039 Carboxyl transferase domain NPA28_14740 PF17848 Acetyl-coA carboxylase zinc finger domain NPA28_14745 PF00390 Malic enzyme, N-terminal domain NPA28_14745 PF03949 Malic enzyme, NAD binding domain NPA28_14750 PF01336 OB-fold nucleic acid binding domain NPA28_14750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NPA28_14750 PF14579 Helix-hairpin-helix motif NPA28_14750 PF02811 PHP domain NPA28_14750 PF07733 Bacterial DNA polymerase III alpha NTPase domain NPA28_14755 PF14034 Sporulation protein YtrH NPA28_14770 PF02272 DHHA1 domain NPA28_14770 PF01368 DHH family NPA28_14775 PF14007 YtpI-like protein NPA28_14780 PF03061 Thioesterase superfamily NPA28_14780 PF00571 CBS domain NPA28_14780 PF00392 Bacterial regulatory proteins, gntR family NPA28_14780 PF07085 DRTGG domain NPA28_14800 PF14698 Argininosuccinate lyase C-terminal NPA28_14800 PF00206 Lyase NPA28_14805 PF00764 Arginosuccinate synthase NPA28_14810 PF00994 Probable molybdopterin binding domain NPA28_14815 PF00871 Acetokinase family NPA28_14820 PF02384 N-6 DNA Methylase NPA28_14825 PF08534 Redoxin NPA28_14830 PF09579 Sporulation protein YtfJ (Spore_YtfJ) NPA28_14835 PF11167 Protein of unknown function (DUF2953) NPA28_14840 PF06271 RDD family NPA28_14845 PF01343 Peptidase family S49 NPA28_14850 PF01513 ATP-NAD kinase NPA28_14855 PF07969 Amidohydrolase family NPA28_14860 PF00501 AMP-binding enzyme NPA28_14860 PF13193 AMP-binding enzyme C-terminal domain NPA28_14865 PF00269 Small, acid-soluble spore proteins, alpha/beta type NPA28_14870 PF02568 Thiamine biosynthesis protein (ThiI) NPA28_14870 PF02926 THUMP domain NPA28_14875 PF00266 Aminotransferase class-V NPA28_14880 PF05525 Branched-chain amino acid transport protein NPA28_14885 PF06160 Septation ring formation regulator, EzrA NPA28_14890 PF02811 PHP domain NPA28_14895 PF00440 Bacterial regulatory proteins, tetR family NPA28_14900 PF13185 GAF domain NPA28_14905 PF00990 Diguanylate cyclase, GGDEF domain NPA28_14910 PF01479 S4 domain NPA28_14910 PF00163 Ribosomal protein S4/S9 N-terminal domain NPA28_14920 PF00579 tRNA synthetases class I (W and Y) NPA28_14920 PF01479 S4 domain NPA28_14925 PF00501 AMP-binding enzyme NPA28_14925 PF13193 AMP-binding enzyme C-terminal domain NPA28_14930 PF00583 Acetyltransferase (GNAT) family NPA28_14935 PF00571 CBS domain NPA28_14940 PF00850 Histone deacetylase domain NPA28_14945 PF00691 OmpA family NPA28_14945 PF13677 Membrane MotB of proton-channel complex MotA/MotB NPA28_14950 PF01618 MotA/TolQ/ExbB proton channel family NPA28_14955 PF00356 Bacterial regulatory proteins, lacI family NPA28_14960 PF00793 DAHP synthetase I family NPA28_14960 PF01817 Chorismate mutase type II NPA28_14965 PF11009 Protein of unknown function (DUF2847) NPA28_14970 PF12732 YtxH-like protein NPA28_14975 PF06103 Bacterial protein of unknown function (DUF948) NPA28_14980 PF08245 Mur ligase middle domain NPA28_14980 PF02875 Mur ligase family, glutamate ligase domain NPA28_14980 PF01225 Mur ligase family, catalytic domain NPA28_14985 PF09397 Ftsk gamma domain NPA28_14985 PF01580 FtsK/SpoIIIE family NPA28_14985 PF17854 FtsK alpha domain NPA28_14990 PF01588 Putative tRNA binding domain NPA28_14990 PF14794 Domain of unknown function (DUF4479) NPA28_14995 PF07285 Protein of unknown function (DUF1444) NPA28_15000 PF00085 Thioredoxin NPA28_15010 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ NPA28_15015 PF05343 M42 glutamyl aminopeptidase NPA28_15020 PF03413 Peptidase propeptide and YPEB domain NPA28_15025 PF00390 Malic enzyme, N-terminal domain NPA28_15025 PF03949 Malic enzyme, NAD binding domain NPA28_15030 PF00753 Metallo-beta-lactamase superfamily NPA28_15035 PF02390 Putative methyltransferase NPA28_15040 PF14165 YtzH-like protein NPA28_15045 PF01636 Phosphotransferase enzyme family NPA28_15050 PF17999 Pullulanase N1-terminal domain NPA28_15050 PF00128 Alpha amylase, catalytic domain NPA28_15050 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NPA28_15055 PF00781 Diacylglycerol kinase catalytic domain NPA28_15070 PF00291 Pyridoxal-phosphate dependent enzyme NPA28_15075 PF01546 Peptidase family M20/M25/M40 NPA28_15080 PF00860 Permease family NPA28_15085 PF05975 Bacterial ABC transporter protein EcsB NPA28_15090 PF00005 ABC transporter NPA28_15095 PF08220 DeoR-like helix-turn-helix domain NPA28_15100 PF01479 S4 domain NPA28_15100 PF00849 RNA pseudouridylate synthase NPA28_15105 PF14667 Polysaccharide biosynthesis C-terminal domain NPA28_15105 PF01943 Polysaccharide biosynthesis protein NPA28_15115 PF02028 BCCT, betaine/carnitine/choline family transporter NPA28_15120 PF10957 Sporulation protein Cse60 NPA28_15125 PF04854 Protein of unknown function, DUF624 NPA28_15130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPA28_15130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPA28_15140 PF07470 Glycosyl Hydrolase Family 88 NPA28_15145 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_15150 PF12833 Helix-turn-helix domain NPA28_15150 PF17853 GGDEF-like domain NPA28_15155 PF13416 Bacterial extracellular solute-binding protein NPA28_15160 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_15165 PF01370 NAD dependent epimerase/dehydratase family NPA28_15170 PF00067 Cytochrome P450 NPA28_15175 PF04055 Radical SAM superfamily NPA28_15175 PF06968 Biotin and Thiamin Synthesis associated domain NPA28_15185 PF00155 Aminotransferase class I and II NPA28_15190 PF00202 Aminotransferase class-III NPA28_15195 PF03744 6-carboxyhexanoate--CoA ligase NPA28_15200 PF01738 Dienelactone hydrolase family NPA28_15205 PF00356 Bacterial regulatory proteins, lacI family NPA28_15210 PF01547 Bacterial extracellular solute-binding protein NPA28_15215 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_15220 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_15225 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPA28_15225 PF02056 Family 4 glycosyl hydrolase NPA28_15230 PF00581 Rhodanese-like domain NPA28_15235 PF09334 tRNA synthetases class I (M) NPA28_15235 PF13603 Leucyl-tRNA synthetase, Domain 2 NPA28_15235 PF00133 tRNA synthetases class I (I, L, M and V) NPA28_15235 PF08264 Anticodon-binding domain of tRNA NPA28_15240 PF14074 Protein of unknown function (DUF4257) NPA28_15245 PF01740 STAS domain NPA28_15245 PF13426 PAS domain NPA28_15250 PF07690 Major Facilitator Superfamily NPA28_15255 PF04791 LMBR1-like membrane protein NPA28_15260 PF02687 FtsX-like permease family NPA28_15265 PF00005 ABC transporter NPA28_15270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_15275 PF00486 Transcriptional regulatory protein, C terminal NPA28_15275 PF00072 Response regulator receiver domain NPA28_15280 PF02687 FtsX-like permease family NPA28_15280 PF12704 MacB-like periplasmic core domain NPA28_15285 PF00005 ABC transporter NPA28_15300 PF00005 ABC transporter NPA28_15305 PF00392 Bacterial regulatory proteins, gntR family NPA28_15315 PF10732 Protein of unknown function (DUF2524) NPA28_15320 PF16199 Radical_SAM C-terminal domain NPA28_15320 PF04055 Radical SAM superfamily NPA28_15325 PF06962 Putative rRNA methylase NPA28_15330 PF10776 Protein of unknown function (DUF2600) NPA28_15335 PF12146 Serine aminopeptidase, S33 NPA28_15340 PF00132 Bacterial transferase hexapeptide (six repeats) NPA28_15345 PF00324 Amino acid permease NPA28_15350 PF13537 Glutamine amidotransferase domain NPA28_15350 PF00733 Asparagine synthase NPA28_15355 PF00438 S-adenosylmethionine synthetase, N-terminal domain NPA28_15355 PF02772 S-adenosylmethionine synthetase, central domain NPA28_15355 PF02773 S-adenosylmethionine synthetase, C-terminal domain NPA28_15360 PF01293 Phosphoenolpyruvate carboxykinase NPA28_15365 PF10763 Protein of unknown function (DUF2584) NPA28_15370 PF00326 Prolyl oligopeptidase family NPA28_15380 PF00005 ABC transporter NPA28_15385 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_15390 PF00293 NUDIX domain NPA28_15395 PF05105 Bacteriophage holin family NPA28_15400 PF00210 Ferritin-like domain NPA28_15410 PF13115 YtkA-like NPA28_15415 PF02664 S-Ribosylhomocysteinase (LuxS) NPA28_15420 PF01809 Putative membrane protein insertion efficiency factor NPA28_15425 PF00484 Carbonic anhydrase NPA28_15430 PF01197 Ribosomal protein L31 NPA28_15435 PF01654 Cytochrome bd terminal oxidase subunit I NPA28_15440 PF02322 Cytochrome bd terminal oxidase subunit II NPA28_15445 PF07561 Domain of Unknown Function (DUF1540) NPA28_15450 PF00950 ABC 3 transport family NPA28_15455 PF00950 ABC 3 transport family NPA28_15460 PF00005 ABC transporter NPA28_15465 PF01297 Zinc-uptake complex component A periplasmic NPA28_15470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NPA28_15470 PF13378 Enolase C-terminal domain-like NPA28_15475 PF00501 AMP-binding enzyme NPA28_15475 PF13193 AMP-binding enzyme C-terminal domain NPA28_15480 PF00378 Enoyl-CoA hydratase/isomerase NPA28_15485 PF00561 alpha/beta hydrolase fold NPA28_15490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NPA28_15490 PF16582 Middle domain of thiamine pyrophosphate NPA28_15490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPA28_15495 PF00425 chorismate binding enzyme NPA28_15500 PF01258 Prokaryotic dksA/traR C4-type zinc finger NPA28_15505 PF03073 TspO/MBR family NPA28_15510 PF00343 Carbohydrate phosphorylase NPA28_15515 PF08323 Starch synthase catalytic domain NPA28_15515 PF00534 Glycosyl transferases group 1 NPA28_15520 PF00483 Nucleotidyl transferase NPA28_15525 PF00483 Nucleotidyl transferase NPA28_15530 PF00128 Alpha amylase, catalytic domain NPA28_15530 PF02806 Alpha amylase, C-terminal all-beta domain NPA28_15530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NPA28_15655 PF09515 Thiamine transporter protein (Thia_YuaJ) NPA28_15660 PF00583 Acetyltransferase (GNAT) family NPA28_15665 PF01145 SPFH domain / Band 7 family NPA28_15665 PF15975 Flotillin NPA28_15675 PF12867 DinB superfamily NPA28_15685 PF00465 Iron-containing alcohol dehydrogenase NPA28_15690 PF00171 Aldehyde dehydrogenase family NPA28_15700 PF17735 Biofilm surface layer A NPA28_15705 PF02254 TrkA-N domain NPA28_15705 PF02080 TrkA-C domain NPA28_15710 PF02386 Cation transport protein NPA28_15715 PF05360 yiaA/B two helix domain NPA28_15720 PF13457 GW (Gly-Tryp) dipeptide domain NPA28_15720 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPA28_15725 PF07690 Major Facilitator Superfamily NPA28_15730 PF05995 Cysteine dioxygenase type I NPA28_15740 PF02673 Bacitracin resistance protein BacA NPA28_15745 PF01594 AI-2E family transporter NPA28_15750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPA28_15750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPA28_15755 PF06134 L-rhamnose isomerase (RhaA) NPA28_15760 PF05336 L-rhamnose mutarotase NPA28_15765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPA28_15765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPA28_15770 PF08220 DeoR-like helix-turn-helix domain NPA28_15770 PF00455 DeoR C terminal sensor domain NPA28_15775 PF00596 Class II Aldolase and Adducin N-terminal domain NPA28_15780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_15780 PF00672 HAMP domain NPA28_15780 PF02743 Cache domain NPA28_15785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_15785 PF00672 HAMP domain NPA28_15785 PF02743 Cache domain NPA28_15790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_15790 PF00672 HAMP domain NPA28_15790 PF02743 Cache domain NPA28_15795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_15795 PF00672 HAMP domain NPA28_15795 PF02743 Cache domain NPA28_15810 PF03060 Nitronate monooxygenase NPA28_15815 PF01894 Uncharacterised protein family UPF0047 NPA28_15820 PF16657 Maltogenic Amylase, C-terminal domain NPA28_15820 PF00128 Alpha amylase, catalytic domain NPA28_15825 PF01595 Cyclin M transmembrane N-terminal domain NPA28_15825 PF03471 Transporter associated domain NPA28_15825 PF00571 CBS domain NPA28_15830 PF04298 Putative neutral zinc metallopeptidase NPA28_15840 PF11458 Membrane-integrating protein Mistic NPA28_15845 PF02254 TrkA-N domain NPA28_15845 PF07885 Ion channel NPA28_15850 PF08868 YugN-like family NPA28_15860 PF00342 Phosphoglucose isomerase NPA28_15865 PF00465 Iron-containing alcohol dehydrogenase NPA28_15870 PF00465 Iron-containing alcohol dehydrogenase NPA28_15875 PF04070 Domain of unknown function (DUF378) NPA28_15880 PF00575 S1 RNA binding domain NPA28_15885 PF00155 Aminotransferase class I and II NPA28_15890 PF01037 Lrp/AsnC ligand binding domain NPA28_15895 PF08386 TAP-like protein NPA28_15895 PF00561 alpha/beta hydrolase fold NPA28_15900 PF08958 Domain of unknown function (DUF1871) NPA28_15905 PF00155 Aminotransferase class I and II NPA28_15910 PF00512 His Kinase A (phospho-acceptor) domain NPA28_15910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_15915 PF08810 Kinase associated protein B NPA28_15920 PF00929 Exonuclease NPA28_15930 PF07690 Major Facilitator Superfamily NPA28_15935 PF00905 Penicillin binding protein transpeptidase domain NPA28_15935 PF00912 Transglycosylase NPA28_15940 PF04134 Protein of unknown function, DUF393 NPA28_15945 PF17328 Family of unknown function (DUF5366) NPA28_15950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_15950 PF00989 PAS fold NPA28_15950 PF17203 Single cache domain 3 NPA28_15950 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NPA28_15955 PF00072 Response regulator receiver domain NPA28_15960 PF02608 ABC transporter substrate-binding protein PnrA-like NPA28_15965 PF00005 ABC transporter NPA28_15970 PF02653 Branched-chain amino acid transport system / permease component NPA28_15975 PF02653 Branched-chain amino acid transport system / permease component NPA28_15980 PF03390 2-hydroxycarboxylate transporter family NPA28_15990 PF13244 Domain of unknown function (DUF4040) NPA28_15990 PF00361 Proton-conducting membrane transporter NPA28_15990 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NPA28_15995 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NPA28_16000 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NPA28_16005 PF00361 Proton-conducting membrane transporter NPA28_16010 PF01899 Na+/H+ ion antiporter subunit NPA28_16015 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NPA28_16020 PF03334 Na+/H+ antiporter subunit NPA28_16025 PF03061 Thioesterase superfamily NPA28_16030 PF00072 Response regulator receiver domain NPA28_16030 PF00196 Bacterial regulatory proteins, luxR family NPA28_16035 PF07730 Histidine kinase NPA28_16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_16045 PF00348 Polyprenyl synthetase NPA28_16050 PF08181 DegQ (SacQ) family NPA28_16060 PF08668 HDOD domain NPA28_16060 PF00563 EAL domain NPA28_16065 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NPA28_16065 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NPA28_16065 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NPA28_16070 PF00857 Isochorismatase family NPA28_16075 PF07997 Protein of unknown function (DUF1694) NPA28_16080 PF14166 YueH-like protein NPA28_16085 PF10676 Spore germination protein gerPA/gerPF NPA28_16090 PF01594 AI-2E family transporter NPA28_16095 PF10842 Protein of unknown function (DUF2642) NPA28_16100 PF01966 HD domain NPA28_16105 PF00106 short chain dehydrogenase NPA28_16110 PF17355 Family of unknown function (DUF5383) NPA28_16120 PF12538 DNA transporter NPA28_16120 PF01580 FtsK/SpoIIIE family NPA28_16125 PF10140 WXG100 protein secretion system (Wss), protein YukC NPA28_16130 PF08817 WXG100 protein secretion system (Wss), protein YukD NPA28_16135 PF06013 Proteins of 100 residues with WXG NPA28_16140 PF13556 PucR C-terminal helix-turn-helix domain NPA28_16140 PF17853 GGDEF-like domain NPA28_16140 PF06018 CodY GAF-like domain NPA28_16145 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NPA28_16145 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NPA28_16150 PF10042 Uncharacterized conserved protein (DUF2278) NPA28_16155 PF03621 MbtH-like protein NPA28_16160 PF13193 AMP-binding enzyme C-terminal domain NPA28_16160 PF00668 Condensation domain NPA28_16160 PF00550 Phosphopantetheine attachment site NPA28_16160 PF00975 Thioesterase domain NPA28_16160 PF00501 AMP-binding enzyme NPA28_16165 PF00857 Isochorismatase family NPA28_16165 PF00550 Phosphopantetheine attachment site NPA28_16170 PF00501 AMP-binding enzyme NPA28_16170 PF13193 AMP-binding enzyme C-terminal domain NPA28_16175 PF00425 chorismate binding enzyme NPA28_16180 PF00106 short chain dehydrogenase NPA28_16185 PF00756 Putative esterase NPA28_16190 PF00174 Oxidoreductase molybdopterin binding domain NPA28_16195 PF02632 BioY family NPA28_16200 PF13726 Na+-H+ antiporter family NPA28_16200 PF03553 Na+/H+ antiporter family NPA28_16205 PF02789 Cytosol aminopeptidase family, N-terminal domain NPA28_16205 PF00883 Cytosol aminopeptidase family, catalytic domain NPA28_16210 PF02681 Divergent PAP2 family NPA28_16215 PF06725 3D domain NPA28_16220 PF14068 Putative membrane protein NPA28_16225 PF17302 Family of unknown function (DUF5351) NPA28_16230 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_16235 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_16245 PF00478 IMP dehydrogenase / GMP reductase domain NPA28_16250 PF01521 Iron-sulphur cluster biosynthesis NPA28_16255 PF01678 Diaminopimelate epimerase NPA28_16260 PF01773 Na+ dependent nucleoside transporter N-terminus NPA28_16260 PF07662 Na+ dependent nucleoside transporter C-terminus NPA28_16265 PF07293 Protein of unknown function (DUF1450) NPA28_16270 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_16275 PF07315 Protein of unknown function (DUF1462) NPA28_16280 PF01106 NifU-like domain NPA28_16285 PF07676 WD40-like Beta Propeller Repeat NPA28_16285 PF00326 Prolyl oligopeptidase family NPA28_16290 PF08544 GHMP kinases C terminal NPA28_16290 PF00288 GHMP kinases N terminal domain NPA28_16295 PF00291 Pyridoxal-phosphate dependent enzyme NPA28_16300 PF01842 ACT domain NPA28_16300 PF03447 Homoserine dehydrogenase, NAD binding domain NPA28_16300 PF00742 Homoserine dehydrogenase NPA28_16310 PF04608 Phosphatidylglycerophosphatase A NPA28_16315 PF13344 Haloacid dehalogenase-like hydrolase NPA28_16320 PF01934 Protein of unknown function DUF86 NPA28_16325 PF06265 Protein of unknown function (DUF1027) NPA28_16330 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) NPA28_16335 PF04055 Radical SAM superfamily NPA28_16335 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NPA28_16340 PF01551 Peptidase family M23 NPA28_16345 PF09560 Sporulation protein YunB (Spo_YunB) NPA28_16350 PF08827 Domain of unknown function (DUF1805) NPA28_16355 PF02872 5'-nucleotidase, C-terminal domain NPA28_16360 PF01925 Sulfite exporter TauE/SafE NPA28_16365 PF01904 Protein of unknown function DUF72 NPA28_16375 PF01979 Amidohydrolase family NPA28_16380 PF17853 GGDEF-like domain NPA28_16380 PF13556 PucR C-terminal helix-turn-helix domain NPA28_16380 PF07905 Purine catabolism regulatory protein-like family NPA28_16385 PF00860 Permease family NPA28_16390 PF00860 Permease family NPA28_16395 PF01014 Uricase NPA28_16395 PF09349 OHCU decarboxylase NPA28_16400 PF00576 HIUase/Transthyretin family NPA28_16405 PF09680 Family of unknown function NPA28_16415 PF01799 [2Fe-2S] binding domain NPA28_16415 PF00111 2Fe-2S iron-sulfur cluster binding domain NPA28_16420 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NPA28_16420 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NPA28_16425 PF00941 FAD binding domain in molybdopterin dehydrogenase NPA28_16430 PF12804 MobA-like NTP transferase domain NPA28_16435 PF13478 XdhC Rossmann domain NPA28_16435 PF02625 XdhC and CoxI family NPA28_16440 PF00266 Aminotransferase class-V NPA28_16445 PF01546 Peptidase family M20/M25/M40 NPA28_16450 PF04231 Endonuclease I NPA28_16455 PF03459 TOBE domain NPA28_16455 PF17912 MalK OB fold domain NPA28_16455 PF00005 ABC transporter NPA28_16460 PF07702 UTRA domain NPA28_16460 PF00392 Bacterial regulatory proteins, gntR family NPA28_16465 PF00294 pfkB family carbohydrate kinase NPA28_16470 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_16475 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_16480 PF01547 Bacterial extracellular solute-binding protein NPA28_16485 PF01380 SIS domain NPA28_16490 PF01541 GIY-YIG catalytic domain NPA28_16495 PF01266 FAD dependent oxidoreductase NPA28_16510 PF02368 Bacterial Ig-like domain (group 2) NPA28_16515 PF01458 Uncharacterized protein family (UPF0051) NPA28_16520 PF01592 NifU-like N terminal domain NPA28_16525 PF00266 Aminotransferase class-V NPA28_16530 PF01458 Uncharacterized protein family (UPF0051) NPA28_16535 PF00005 ABC transporter NPA28_16545 PF02627 Carboxymuconolactone decarboxylase family NPA28_16550 PF03180 NLPA lipoprotein NPA28_16555 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_16560 PF09383 NIL domain NPA28_16560 PF00005 ABC transporter NPA28_16565 PF02036 SCP-2 sterol transfer family NPA28_16570 PF00085 Thioredoxin NPA28_16575 PF01751 Toprim domain NPA28_16580 PF10830 Protein of unknown function (DUF2553) NPA28_16585 PF01597 Glycine cleavage H-protein NPA28_16590 PF03960 ArsC family NPA28_16595 PF02770 Acyl-CoA dehydrogenase, middle domain NPA28_16595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPA28_16595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPA28_16600 PF02803 Thiolase, C-terminal domain NPA28_16600 PF00108 Thiolase, N-terminal domain NPA28_16605 PF00378 Enoyl-CoA hydratase/isomerase NPA28_16605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NPA28_16605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NPA28_16610 PF14115 YuzL-like protein NPA28_16615 PF01619 Proline dehydrogenase NPA28_16625 PF07875 Coat F domain NPA28_16630 PF01047 MarR family NPA28_16635 PF07690 Major Facilitator Superfamily NPA28_16640 PF14552 Tautomerase enzyme NPA28_16650 PF03466 LysR substrate binding domain NPA28_16650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_16655 PF10835 Protein of unknown function (DUF2573) NPA28_16660 PF00005 ABC transporter NPA28_16665 PF14039 YusW-like protein NPA28_16675 PF00106 short chain dehydrogenase NPA28_16680 PF00210 Ferritin-like domain NPA28_16685 PF13180 PDZ domain NPA28_16690 PF00486 Transcriptional regulatory protein, C terminal NPA28_16690 PF00072 Response regulator receiver domain NPA28_16695 PF00512 His Kinase A (phospho-acceptor) domain NPA28_16695 PF00672 HAMP domain NPA28_16695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_16705 PF00440 Bacterial regulatory proteins, tetR family NPA28_16710 PF00206 Lyase NPA28_16710 PF10415 Fumarase C C-terminus NPA28_16715 PF13113 Protein of unknown function (DUF3970) NPA28_16720 PF03323 Bacillus/Clostridium GerA spore germination protein NPA28_16725 PF03845 Spore germination protein NPA28_16730 PF05504 Spore germination B3/ GerAC like, C-terminal NPA28_16735 PF00196 Bacterial regulatory proteins, luxR family NPA28_16735 PF00072 Response regulator receiver domain NPA28_16740 PF00672 HAMP domain NPA28_16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_16740 PF07730 Histidine kinase NPA28_16745 PF09922 Cell wall-active antibiotics response 4TMS YvqF NPA28_16750 PF13349 Putative adhesin NPA28_16755 PF04012 PspA/IM30 family NPA28_16765 PF07690 Major Facilitator Superfamily NPA28_16770 PF01923 Cobalamin adenosyltransferase NPA28_16775 PF00005 ABC transporter NPA28_16780 PF01032 FecCD transport family NPA28_16785 PF01497 Periplasmic binding protein NPA28_16790 PF00106 short chain dehydrogenase NPA28_16795 PF08450 SMP-30/Gluconolactonase/LRE-like region NPA28_16800 PF00512 His Kinase A (phospho-acceptor) domain NPA28_16800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_16805 PF00072 Response regulator receiver domain NPA28_16805 PF00486 Transcriptional regulatory protein, C terminal NPA28_16815 PF04545 Sigma-70, region 4 NPA28_16820 PF12841 YvrJ protein family NPA28_16825 PF00190 Cupin NPA28_16830 PF14184 Regulatory protein YrvL NPA28_16835 PF12704 MacB-like periplasmic core domain NPA28_16835 PF02687 FtsX-like permease family NPA28_16840 PF00005 ABC transporter NPA28_16845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NPA28_16850 PF00005 ABC transporter NPA28_16855 PF01032 FecCD transport family NPA28_16860 PF01032 FecCD transport family NPA28_16865 PF01497 Periplasmic binding protein NPA28_16870 PF13520 Amino acid permease NPA28_16875 PF09575 Small spore protein J (Spore_SspJ) NPA28_16880 PF04307 LexA-binding, inner membrane-associated putative hydrolase NPA28_16885 PF00884 Sulfatase NPA28_16890 PF12727 PBP superfamily domain NPA28_16890 PF12728 Helix-turn-helix domain NPA28_16900 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_16905 PF00248 Aldo/keto reductase family NPA28_16915 PF00999 Sodium/hydrogen exchanger family NPA28_16920 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NPA28_16920 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NPA28_16925 PF00175 Oxidoreductase NAD-binding domain NPA28_16925 PF00258 Flavodoxin NPA28_16925 PF00667 FAD binding domain NPA28_16930 PF13538 UvrD-like helicase C-terminal domain NPA28_16940 PF03458 UPF0126 domain NPA28_16945 PF02600 Disulfide bond formation protein DsbB NPA28_16950 PF13462 Thioredoxin NPA28_16955 PF00403 Heavy-metal-associated domain NPA28_16960 PF00403 Heavy-metal-associated domain NPA28_16965 PF00403 Heavy-metal-associated domain NPA28_16970 PF02583 Metal-sensitive transcriptional repressor NPA28_16975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPA28_16975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPA28_16980 PF02525 Flavodoxin-like fold NPA28_16990 PF00392 Bacterial regulatory proteins, gntR family NPA28_16990 PF07729 FCD domain NPA28_16995 PF00892 EamA-like transporter family NPA28_17000 PF17314 Family of unknown function (DUF5360) NPA28_17005 PF00893 Small Multidrug Resistance protein NPA28_17010 PF00440 Bacterial regulatory proteins, tetR family NPA28_17015 PF00106 short chain dehydrogenase NPA28_17030 PF01668 SmpB protein NPA28_17035 PF17876 Cold shock domain NPA28_17035 PF00575 S1 RNA binding domain NPA28_17035 PF00773 RNB domain NPA28_17035 PF08206 Ribonuclease B OB domain NPA28_17040 PF12146 Serine aminopeptidase, S33 NPA28_17045 PF03840 Preprotein translocase SecG subunit NPA28_17050 PF00561 alpha/beta hydrolase fold NPA28_17055 PF01381 Helix-turn-helix NPA28_17070 PF01638 HxlR-like helix-turn-helix NPA28_17075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NPA28_17075 PF00672 HAMP domain NPA28_17075 PF12729 Four helix bundle sensory module for signal transduction NPA28_17080 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17085 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NPA28_17090 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17095 PF00571 CBS domain NPA28_17095 PF00005 ABC transporter NPA28_17100 PF12802 MarR family NPA28_17105 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17110 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NPA28_17115 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17120 PF00571 CBS domain NPA28_17120 PF00005 ABC transporter NPA28_17125 PF12802 MarR family NPA28_17130 PF11724 YvbH-like oligomerisation region NPA28_17130 PF08000 Bacterial PH domain NPA28_17140 PF13240 zinc-ribbon domain NPA28_17145 PF00583 Acetyltransferase (GNAT) family NPA28_17160 PF02585 GlcNAc-PI de-N-acetylase NPA28_17165 PF08889 WbqC-like protein family NPA28_17175 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPA28_17180 PF01370 NAD dependent epimerase/dehydratase family NPA28_17185 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPA28_17190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NPA28_17190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NPA28_17190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NPA28_17195 PF04389 Peptidase family M28 NPA28_17195 PF02225 PA domain NPA28_17200 PF03952 Enolase, N-terminal domain NPA28_17200 PF00113 Enolase, C-terminal TIM barrel domain NPA28_17205 PF01676 Metalloenzyme superfamily NPA28_17205 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NPA28_17210 PF00121 Triosephosphate isomerase NPA28_17215 PF00162 Phosphoglycerate kinase NPA28_17220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NPA28_17220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NPA28_17225 PF04198 Putative sugar-binding domain NPA28_17230 PF00083 Sugar (and other) transporter NPA28_17235 PF00392 Bacterial regulatory proteins, gntR family NPA28_17240 PF00296 Luciferase-like monooxygenase NPA28_17245 PF03466 LysR substrate binding domain NPA28_17245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_17250 PF00892 EamA-like transporter family NPA28_17255 PF00324 Amino acid permease NPA28_17260 PF00704 Glycosyl hydrolases family 18 NPA28_17265 PF02589 LUD domain NPA28_17270 PF13183 4Fe-4S dicluster domain NPA28_17270 PF11870 Domain of unknown function (DUF3390) NPA28_17270 PF02589 LUD domain NPA28_17275 PF02754 Cysteine-rich domain NPA28_17285 PF12697 Alpha/beta hydrolase family NPA28_17290 PF07228 Stage II sporulation protein E (SpoIIE) NPA28_17290 PF13426 PAS domain NPA28_17295 PF07745 Glycosyl hydrolase family 53 NPA28_17300 PF08532 Beta-galactosidase trimerisation domain NPA28_17300 PF08533 Beta-galactosidase C-terminal domain NPA28_17300 PF02449 Beta-galactosidase NPA28_17305 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17310 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17315 PF13416 Bacterial extracellular solute-binding protein NPA28_17320 PF00356 Bacterial regulatory proteins, lacI family NPA28_17325 PF00392 Bacterial regulatory proteins, gntR family NPA28_17325 PF07729 FCD domain NPA28_17330 PF02652 L-lactate permease NPA28_17335 PF04552 Sigma-54, DNA binding domain NPA28_17335 PF04963 Sigma-54 factor, core binding domain NPA28_17335 PF00309 Sigma-54 factor, Activator interacting domain (AID) NPA28_17340 PF09628 YvfG protein NPA28_17345 PF04230 Polysaccharide pyruvyl transferase NPA28_17350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPA28_17355 PF17836 PglD N-terminal domain NPA28_17355 PF00132 Bacterial transferase hexapeptide (six repeats) NPA28_17360 PF02397 Bacterial sugar transferase NPA28_17365 PF14667 Polysaccharide biosynthesis C-terminal domain NPA28_17365 PF01943 Polysaccharide biosynthesis protein NPA28_17370 PF00535 Glycosyl transferase family 2 NPA28_17375 PF04230 Polysaccharide pyruvyl transferase NPA28_17380 PF00535 Glycosyl transferase family 2 NPA28_17390 PF13439 Glycosyltransferase Family 4 NPA28_17390 PF00534 Glycosyl transferases group 1 NPA28_17395 PF00535 Glycosyl transferase family 2 NPA28_17400 PF13439 Glycosyltransferase Family 4 NPA28_17400 PF00534 Glycosyl transferases group 1 NPA28_17405 PF02719 Polysaccharide biosynthesis protein NPA28_17410 PF13614 AAA domain NPA28_17420 PF08671 Anti-repressor SinI NPA28_17420 PF01381 Helix-turn-helix NPA28_17425 PF00135 Carboxylesterase family NPA28_17435 PF05870 Phenolic acid decarboxylase (PAD) NPA28_17445 PF01177 Asp/Glu/Hydantoin racemase NPA28_17450 PF00144 Beta-lactamase NPA28_17450 PF11954 Domain of unknown function (DUF3471) NPA28_17460 PF01451 Low molecular weight phosphotyrosine protein phosphatase NPA28_17465 PF02040 Arsenical pump membrane protein NPA28_17470 PF01022 Bacterial regulatory protein, arsR family NPA28_17475 PF02435 Levansucrase/Invertase NPA28_17480 PF00251 Glycosyl hydrolases family 32 N-terminal domain NPA28_17480 PF08244 Glycosyl hydrolases family 32 C terminal NPA28_17485 PF13520 Amino acid permease NPA28_17490 PF00440 Bacterial regulatory proteins, tetR family NPA28_17490 PF17934 Tetracyclin repressor-like, C-terminal domain NPA28_17495 PF00893 Small Multidrug Resistance protein NPA28_17500 PF00893 Small Multidrug Resistance protein NPA28_17505 PF11553 Protein of unknown function (DUF3231) NPA28_17515 PF00574 Clp protease NPA28_17520 PF13419 Haloacid dehalogenase-like hydrolase NPA28_17525 PF00128 Alpha amylase, catalytic domain NPA28_17525 PF16657 Maltogenic Amylase, C-terminal domain NPA28_17530 PF03632 Glycosyl hydrolase family 65 central catalytic domain NPA28_17530 PF03636 Glycosyl hydrolase family 65, N-terminal domain NPA28_17530 PF03633 Glycosyl hydrolase family 65, C-terminal domain NPA28_17535 PF06691 Protein of unknown function (DUF1189) NPA28_17540 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17545 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_17550 PF13416 Bacterial extracellular solute-binding protein NPA28_17555 PF02903 Alpha amylase, N-terminal ig-like domain NPA28_17555 PF00128 Alpha amylase, catalytic domain NPA28_17560 PF00356 Bacterial regulatory proteins, lacI family NPA28_17565 PF03641 Possible lysine decarboxylase NPA28_17570 PF03819 MazG nucleotide pyrophosphohydrolase domain NPA28_17575 PF01740 STAS domain NPA28_17575 PF00916 Sulfate permease family NPA28_17580 PF00484 Carbonic anhydrase NPA28_17585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NPA28_17585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NPA28_17590 PF02687 FtsX-like permease family NPA28_17595 PF00005 ABC transporter NPA28_17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_17605 PF00486 Transcriptional regulatory protein, C terminal NPA28_17605 PF00072 Response regulator receiver domain NPA28_17615 PF00797 N-acetyltransferase NPA28_17620 PF00381 PTS HPr component phosphorylation site NPA28_17625 PF02650 WhiA C-terminal HTH domain NPA28_17625 PF14527 WhiA LAGLIDADG-like domain NPA28_17625 PF10298 WhiA N-terminal LAGLIDADG-like domain NPA28_17630 PF01933 Uncharacterised protein family UPF0052 NPA28_17635 PF03668 P-loop ATPase protein family NPA28_17640 PF00293 NUDIX domain NPA28_17645 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_17650 PF00877 NlpC/P60 family NPA28_17660 PF00005 ABC transporter NPA28_17660 PF00664 ABC transporter transmembrane region NPA28_17690 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NPA28_17690 PF01502 Phosphoribosyl-AMP cyclohydrolase NPA28_17695 PF00977 Histidine biosynthesis protein NPA28_17700 PF00977 Histidine biosynthesis protein NPA28_17705 PF00117 Glutamine amidotransferase class-I NPA28_17710 PF00475 Imidazoleglycerol-phosphate dehydratase NPA28_17715 PF00815 Histidinol dehydrogenase NPA28_17720 PF01634 ATP phosphoribosyltransferase NPA28_17725 PF13393 Histidyl-tRNA synthetase NPA28_17730 PF13529 Peptidase_C39 like family NPA28_17735 PF03211 Pectate lyase NPA28_17740 PF14602 Hexapeptide repeat of succinyl-transferase NPA28_17745 PF13419 Haloacid dehalogenase-like hydrolase NPA28_17750 PF07670 Nucleoside recognition NPA28_17755 PF01790 Prolipoprotein diacylglyceryl transferase NPA28_17760 PF02603 HPr Serine kinase N terminus NPA28_17760 PF07475 HPr Serine kinase C-terminal domain NPA28_17765 PF01979 Amidohydrolase family NPA28_17770 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NPA28_17775 PF07702 UTRA domain NPA28_17775 PF00392 Bacterial regulatory proteins, gntR family NPA28_17780 PF00149 Calcineurin-like phosphoesterase NPA28_17785 PF01047 MarR family NPA28_17790 PF07690 Major Facilitator Superfamily NPA28_17795 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV NPA28_17800 PF04024 PspC domain NPA28_17805 PF13349 Putative adhesin NPA28_17820 PF17755 UvrA DNA-binding domain NPA28_17820 PF17760 UvrA interaction domain NPA28_17820 PF00005 ABC transporter NPA28_17825 PF00271 Helicase conserved C-terminal domain NPA28_17825 PF04851 Type III restriction enzyme, res subunit NPA28_17825 PF02151 UvrB/uvrC motif NPA28_17825 PF12344 Ultra-violet resistance protein B NPA28_17825 PF17757 UvrB interaction domain NPA28_17830 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) NPA28_17835 PF00391 PEP-utilising enzyme, mobile domain NPA28_17835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NPA28_17840 PF00440 Bacterial regulatory proteins, tetR family NPA28_17845 PF07690 Major Facilitator Superfamily NPA28_17850 PF17820 PDZ domain NPA28_17855 PF17423 Swarming motility protein NPA28_17860 PF17820 PDZ domain NPA28_17860 PF03572 Peptidase family S41 NPA28_17860 PF01471 Putative peptidoglycan binding domain NPA28_17865 PF18075 FtsX extracellular domain NPA28_17865 PF02687 FtsX-like permease family NPA28_17870 PF00005 ABC transporter NPA28_17875 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NPA28_17880 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPA28_17880 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPA28_17890 PF02810 SEC-C motif NPA28_17890 PF01043 SecA preprotein cross-linking domain NPA28_17890 PF07516 SecA Wing and Scaffold domain NPA28_17890 PF07517 SecA DEAD-like domain NPA28_17895 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NPA28_17895 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NPA28_17910 PF02561 Flagellar protein FliS NPA28_17915 PF07196 Flagellin hook IN motif NPA28_17915 PF07195 Flagellar hook-associated protein 2 C-terminus NPA28_17915 PF02465 Flagellar hook-associated protein 2 N-terminus NPA28_17920 PF03646 FlaG protein NPA28_17925 PF00669 Bacterial flagellin N-terminal helical region NPA28_17925 PF00700 Bacterial flagellin C-terminal helical region NPA28_17930 PF02599 Global regulator protein family NPA28_17935 PF02623 FliW protein NPA28_17945 PF00669 Bacterial flagellin N-terminal helical region NPA28_17945 PF00700 Bacterial flagellin C-terminal helical region NPA28_17950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPA28_17950 PF00460 Flagella basal body rod protein NPA28_17955 PF05130 FlgN protein NPA28_17960 PF04316 Anti-sigma-28 factor, FlgM NPA28_17975 PF10719 Late competence development protein ComFB NPA28_17980 PF04851 Type III restriction enzyme, res subunit NPA28_17980 PF00271 Helicase conserved C-terminal domain NPA28_17985 PF02645 Uncharacterised protein, DegV family COG1307 NPA28_17990 PF00072 Response regulator receiver domain NPA28_17990 PF00196 Bacterial regulatory proteins, luxR family NPA28_17995 PF07730 Histidine kinase NPA28_17995 PF05384 Sensor protein DegS NPA28_17995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_18000 PF09186 Domain of unknown function (DUF1949) NPA28_18000 PF01205 Uncharacterized protein family UPF0029 NPA28_18005 PF03816 Cell envelope-related transcriptional attenuator domain NPA28_18010 PF00953 Glycosyl transferase family 4 NPA28_18020 PF00535 Glycosyl transferase family 2 NPA28_18025 PF02706 Chain length determinant protein NPA28_18030 PF04932 O-Antigen ligase NPA28_18035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NPA28_18035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NPA28_18035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NPA28_18040 PF13439 Glycosyltransferase Family 4 NPA28_18040 PF00534 Glycosyl transferases group 1 NPA28_18045 PF14667 Polysaccharide biosynthesis C-terminal domain NPA28_18045 PF01943 Polysaccharide biosynthesis protein NPA28_18050 PF02397 Bacterial sugar transferase NPA28_18055 PF04122 Putative cell wall binding repeat 2 NPA28_18055 PF01520 N-acetylmuramoyl-L-alanine amidase NPA28_18060 PF08486 Stage II sporulation protein NPA28_18060 PF04122 Putative cell wall binding repeat 2 NPA28_18070 PF03816 Cell envelope-related transcriptional attenuator domain NPA28_18075 PF02350 UDP-N-acetylglucosamine 2-epimerase NPA28_18080 PF00483 Nucleotidyl transferase NPA28_18090 PF00534 Glycosyl transferases group 1 NPA28_18095 PF00534 Glycosyl transferases group 1 NPA28_18095 PF13439 Glycosyltransferase Family 4 NPA28_18100 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NPA28_18110 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NPA28_18125 PF00005 ABC transporter NPA28_18130 PF01061 ABC-2 type transporter NPA28_18135 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NPA28_18140 PF00534 Glycosyl transferases group 1 NPA28_18140 PF09318 Glycosyl transferase 1 domain A NPA28_18145 PF01467 Cytidylyltransferase-like NPA28_18150 PF03808 Glycosyl transferase WecB/TagA/CpsF family NPA28_18155 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NPA28_18165 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NPA28_18165 PF08239 Bacterial SH3 domain NPA28_18165 PF05036 Sporulation related domain NPA28_18170 PF01238 Phosphomannose isomerase type I NPA28_18175 PF03323 Bacillus/Clostridium GerA spore germination protein NPA28_18180 PF03845 Spore germination protein NPA28_18185 PF05504 Spore germination B3/ GerAC like, C-terminal NPA28_18190 PF00083 Sugar (and other) transporter NPA28_18195 PF03816 Cell envelope-related transcriptional attenuator domain NPA28_18205 PF00877 NlpC/P60 family NPA28_18215 PF09587 Bacterial capsule synthesis protein PGA_cap NPA28_18220 PF14102 Capsule biosynthesis CapC NPA28_18225 PF08245 Mur ligase middle domain NPA28_18230 PF00356 Bacterial regulatory proteins, lacI family NPA28_18235 PF00294 pfkB family carbohydrate kinase NPA28_18240 PF05025 RbsD / FucU transport protein family NPA28_18245 PF00005 ABC transporter NPA28_18250 PF02653 Branched-chain amino acid transport system / permease component NPA28_18255 PF13407 Periplasmic binding protein domain NPA28_18260 PF08239 Bacterial SH3 domain NPA28_18265 PF13031 Protein of unknown function (DUF3892) NPA28_18270 PF02525 Flavodoxin-like fold NPA28_18275 PF03306 Alpha-acetolactate decarboxylase NPA28_18280 PF00205 Thiamine pyrophosphate enzyme, central domain NPA28_18280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPA28_18280 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NPA28_18285 PF03466 LysR substrate binding domain NPA28_18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_18290 PF02040 Arsenical pump membrane protein NPA28_18305 PF08757 CotH kinase protein NPA28_18315 PF01613 Flavin reductase like domain NPA28_18320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPA28_18325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPA28_18335 PF00834 Ribulose-phosphate 3 epimerase family NPA28_18350 PF13404 AsnC-type helix-turn-helix domain NPA28_18350 PF01037 Lrp/AsnC ligand binding domain NPA28_18355 PF02417 Chromate transporter NPA28_18360 PF02417 Chromate transporter NPA28_18370 PF03358 NADPH-dependent FMN reductase NPA28_18375 PF03466 LysR substrate binding domain NPA28_18375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_18380 PF04493 Endonuclease V NPA28_18425 PF14431 YwqJ-like deaminase NPA28_18425 PF14449 Pre-toxin TG NPA28_18425 PF04740 LXG domain of WXG superfamily NPA28_18435 PF16888 Domain of unknown function (DUF5082) NPA28_18445 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NPA28_18445 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NPA28_18445 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NPA28_18455 PF13614 AAA domain NPA28_18460 PF13807 G-rich domain on putative tyrosine kinase NPA28_18460 PF02706 Chain length determinant protein NPA28_18470 PF04434 SWIM zinc finger NPA28_18475 PF00176 SNF2 family N-terminal domain NPA28_18475 PF00271 Helicase conserved C-terminal domain NPA28_18475 PF12419 SNF2 Helicase protein NPA28_18485 PF08220 DeoR-like helix-turn-helix domain NPA28_18485 PF00455 DeoR C terminal sensor domain NPA28_18490 PF00436 Single-strand binding protein family NPA28_18500 PF14183 YwpF-like protein NPA28_18505 PF00905 Penicillin binding protein transpeptidase domain NPA28_18510 PF01741 Large-conductance mechanosensitive channel, MscL NPA28_18515 PF07977 FabA-like domain NPA28_18520 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_18525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPA28_18525 PF00460 Flagella basal body rod protein NPA28_18530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NPA28_18530 PF00460 Flagella basal body rod protein NPA28_18540 PF12116 Stage III sporulation protein D NPA28_18550 PF01047 MarR family NPA28_18555 PF07690 Major Facilitator Superfamily NPA28_18560 PF13229 Right handed beta helix region NPA28_18565 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NPA28_18570 PF07690 Major Facilitator Superfamily NPA28_18575 PF00857 Isochorismatase family NPA28_18585 PF00909 Ammonium Transporter Family NPA28_18590 PF00543 Nitrogen regulatory protein P-II NPA28_18595 PF01569 PAP2 superfamily NPA28_18600 PF04892 VanZ like family NPA28_18605 PF01551 Peptidase family M23 NPA28_18610 PF00583 Acetyltransferase (GNAT) family NPA28_18615 PF17319 Family of unknown function (DUF5362) NPA28_18620 PF02719 Polysaccharide biosynthesis protein NPA28_18625 PF16363 GDP-mannose 4,6 dehydratase NPA28_18630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPA28_18635 PF02348 Cytidylyltransferase NPA28_18650 PF08666 SAF domain NPA28_18650 PF03102 NeuB family NPA28_18655 PF17370 Family of unknown function (DUF5392) NPA28_18660 PF13396 Phospholipase_D-nuclease N-terminal NPA28_18660 PF13091 PLD-like domain NPA28_18665 PF17319 Family of unknown function (DUF5362) NPA28_18670 PF13460 NAD(P)H-binding NPA28_18675 PF02082 Transcriptional regulator NPA28_18680 PF01979 Amidohydrolase family NPA28_18680 PF00449 Urease alpha-subunit, N-terminal domain NPA28_18685 PF00699 Urease beta subunit NPA28_18690 PF00547 Urease, gamma subunit NPA28_18695 PF00005 ABC transporter NPA28_18700 PF12399 Branched-chain amino acid ATP-binding cassette transporter NPA28_18700 PF00005 ABC transporter NPA28_18710 PF02653 Branched-chain amino acid transport system / permease component NPA28_18720 PF05532 CsbD-like NPA28_18730 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_18730 PF17874 MalT-like TPR region NPA28_18735 PF04055 Radical SAM superfamily NPA28_18735 PF06463 Molybdenum Cofactor Synthesis C NPA28_18740 PF02634 FdhD/NarQ family NPA28_18750 PF00092 von Willebrand factor type A domain NPA28_18755 PF00092 von Willebrand factor type A domain NPA28_18760 PF08486 Stage II sporulation protein NPA28_18765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPA28_18770 PF08680 TATA-box binding NPA28_18775 PF06612 Protein of unknown function (DUF1146) NPA28_18785 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NPA28_18785 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NPA28_18790 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPA28_18790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPA28_18795 PF00231 ATP synthase NPA28_18800 PF02874 ATP synthase alpha/beta family, beta-barrel domain NPA28_18800 PF00306 ATP synthase alpha/beta chain, C terminal domain NPA28_18800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPA28_18805 PF00213 ATP synthase delta (OSCP) subunit NPA28_18810 PF00430 ATP synthase B/B' CF(0) NPA28_18815 PF00137 ATP synthase subunit C NPA28_18820 PF00119 ATP synthase A chain NPA28_18825 PF03899 ATP synthase I chain NPA28_18835 PF00464 Serine hydroxymethyltransferase NPA28_18840 PF04260 Protein of unknown function (DUF436) NPA28_18845 PF02502 Ribose/Galactose Isomerase NPA28_18850 PF01451 Low molecular weight phosphotyrosine protein phosphatase NPA28_18855 PF02659 Putative manganese efflux pump NPA28_18860 PF01300 Telomere recombination NPA28_18860 PF03481 Putative GTP-binding controlling metal-binding NPA28_18870 PF09551 Stage II sporulation protein R (spore_II_R) NPA28_18875 PF17094 Uncharacterised protein family (UPF0715) NPA28_18880 PF17247 Family of unknown function (DUF5316) NPA28_18885 PF05175 Methyltransferase small domain NPA28_18885 PF17827 PrmC N-terminal domain NPA28_18890 PF03462 PCRF domain NPA28_18890 PF00472 RF-1 domain NPA28_18895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_18900 PF13411 MerR HTH family regulatory protein NPA28_18905 PF03547 Membrane transport protein NPA28_18910 PF00390 Malic enzyme, N-terminal domain NPA28_18910 PF03949 Malic enzyme, NAD binding domain NPA28_18915 PF00265 Thymidine kinase NPA28_18920 PF01197 Ribosomal protein L31 NPA28_18925 PF07498 Rho termination factor, N-terminal domain NPA28_18925 PF07497 Rho termination factor, RNA-binding domain NPA28_18925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NPA28_18935 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NPA28_18940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NPA28_18945 PF00923 Transaldolase/Fructose-6-phosphate aldolase NPA28_18950 PF01116 Fructose-bisphosphate aldolase class-II NPA28_18955 PF00072 Response regulator receiver domain NPA28_18960 PF10740 Domain of unknown function (DUF2529) NPA28_18965 PF00117 Glutamine amidotransferase class-I NPA28_18965 PF06418 CTP synthase N-terminus NPA28_18970 PF05066 HB1, ASXL, restriction endonuclease HTH domain NPA28_18975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NPA28_18975 PF02770 Acyl-CoA dehydrogenase, middle domain NPA28_18975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NPA28_18980 PF13183 4Fe-4S dicluster domain NPA28_18980 PF02754 Cysteine-rich domain NPA28_18985 PF13091 PLD-like domain NPA28_18990 PF03851 UV-endonuclease UvdE NPA28_19000 PF01381 Helix-turn-helix NPA28_19010 PF00005 ABC transporter NPA28_19010 PF00664 ABC transporter transmembrane region NPA28_19015 PF13396 Phospholipase_D-nuclease N-terminal NPA28_19015 PF13091 PLD-like domain NPA28_19025 PF02665 Nitrate reductase gamma subunit NPA28_19030 PF02613 Nitrate reductase delta subunit NPA28_19035 PF14711 Respiratory nitrate reductase beta C-terminal NPA28_19035 PF13247 4Fe-4S dicluster domain NPA28_19040 PF01568 Molydopterin dinucleotide binding domain NPA28_19040 PF00384 Molybdopterin oxidoreductase NPA28_19040 PF14710 Respiratory nitrate reductase alpha N-terminal NPA28_19050 PF14256 YwiC-like protein NPA28_19055 PF00325 Bacterial regulatory proteins, crp family NPA28_19055 PF00027 Cyclic nucleotide-binding domain NPA28_19060 PF07690 Major Facilitator Superfamily NPA28_19065 PF00750 tRNA synthetases class I (R) NPA28_19065 PF03485 Arginyl tRNA synthetase N terminal domain NPA28_19065 PF05746 DALR anticodon binding domain NPA28_19070 PF09148 Domain of unknown function (DUF1934) NPA28_19075 PF11420 Bacteriocin subtilosin A NPA28_19085 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NPA28_19085 PF04055 Radical SAM superfamily NPA28_19085 PF13186 Iron-sulfur cluster-binding domain NPA28_19095 PF00005 ABC transporter NPA28_19105 PF05193 Peptidase M16 inactive domain NPA28_19110 PF00675 Insulinase (Peptidase family M16) NPA28_19130 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_19140 PF00491 Arginase family NPA28_19145 PF17284 Spermidine synthase tetramerisation domain NPA28_19150 PF00905 Penicillin binding protein transpeptidase domain NPA28_19150 PF00912 Transglycosylase NPA28_19160 PF08741 YwhD family NPA28_19165 PF02163 Peptidase family M50 NPA28_19170 PF01361 Tautomerase enzyme NPA28_19175 PF01047 MarR family NPA28_19180 PF03129 Anticodon binding domain NPA28_19180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NPA28_19180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NPA28_19180 PF02824 TGS domain NPA28_19190 PF07690 Major Facilitator Superfamily NPA28_19195 PF02082 Transcriptional regulator NPA28_19205 PF01966 HD domain NPA28_19210 PF07293 Protein of unknown function (DUF1450) NPA28_19220 PF00892 EamA-like transporter family NPA28_19225 PF03099 Biotin/lipoate A/B protein ligase family NPA28_19230 PF03466 LysR substrate binding domain NPA28_19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_19235 PF01515 Phosphate acetyl/butaryl transferase NPA28_19240 PF06778 Chlorite dismutase NPA28_19250 PF00155 Aminotransferase class I and II NPA28_19255 PF07690 Major Facilitator Superfamily NPA28_19270 PF07883 Cupin domain NPA28_19280 PF07690 Major Facilitator Superfamily NPA28_19285 PF07690 Major Facilitator Superfamily NPA28_19290 PF00324 Amino acid permease NPA28_19295 PF01546 Peptidase family M20/M25/M40 NPA28_19300 PF00171 Aldehyde dehydrogenase family NPA28_19305 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NPA28_19305 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NPA28_19310 PF17735 Biofilm surface layer A NPA28_19315 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NPA28_19320 PF04321 RmlD substrate binding domain NPA28_19325 PF16363 GDP-mannose 4,6 dehydratase NPA28_19330 PF00483 Nucleotidyl transferase NPA28_19335 PF04101 Glycosyltransferase family 28 C-terminal domain NPA28_19340 PF02348 Cytidylyltransferase NPA28_19345 PF08666 SAF domain NPA28_19345 PF03102 NeuB family NPA28_19350 PF00583 Acetyltransferase (GNAT) family NPA28_19355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NPA28_19360 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase NPA28_19365 PF00535 Glycosyl transferase family 2 NPA28_19370 PF09671 Spore coat protein (Spore_GerQ) NPA28_19375 PF04241 Protein of unknown function (DUF423) NPA28_19380 PF00860 Permease family NPA28_19385 PF17261 Family of unknown function (DUF5327) NPA28_19390 PF00171 Aldehyde dehydrogenase family NPA28_19395 PF03167 Uracil DNA glycosylase superfamily NPA28_19400 PF00535 Glycosyl transferase family 2 NPA28_19415 PF03551 Transcriptional regulator PadR-like family NPA28_19420 PF08543 Phosphomethylpyrimidine kinase NPA28_19430 PF00251 Glycosyl hydrolases family 32 N-terminal domain NPA28_19430 PF08244 Glycosyl hydrolases family 32 C terminal NPA28_19435 PF00367 phosphotransferase system, EIIB NPA28_19435 PF02378 Phosphotransferase system, EIIC NPA28_19440 PF01226 Formate/nitrite transporter NPA28_19445 PF00874 PRD domain NPA28_19445 PF03123 CAT RNA binding domain NPA28_19455 PF02225 PA domain NPA28_19455 PF05922 Peptidase inhibitor I9 NPA28_19455 PF13860 FlgD Ig-like domain NPA28_19455 PF00082 Subtilase family NPA28_19460 PF00296 Luciferase-like monooxygenase NPA28_19465 PF00881 Nitroreductase family NPA28_19470 PF01098 Cell cycle protein NPA28_19480 PF17368 Spore morphogenesis and germination YwcE NPA28_19485 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NPA28_19490 PF00510 Cytochrome c oxidase subunit III NPA28_19495 PF00115 Cytochrome C and Quinol oxidase polypeptide I NPA28_19500 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NPA28_19500 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NPA28_19505 PF04226 Transglycosylase associated protein NPA28_19510 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NPA28_19510 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NPA28_19515 PF10509 Galactokinase galactose-binding signature NPA28_19515 PF08544 GHMP kinases C terminal NPA28_19515 PF00288 GHMP kinases N terminal domain NPA28_19520 PF04138 GtrA-like protein NPA28_19525 PF00440 Bacterial regulatory proteins, tetR family NPA28_19530 PF08671 Anti-repressor SinI NPA28_19535 PF04341 Protein of unknown function, DUF485 NPA28_19540 PF00474 Sodium:solute symporter family NPA28_19545 PF01323 DSBA-like thioredoxin domain NPA28_19550 PF10518 TAT (twin-arginine translocation) pathway signal sequence NPA28_19550 PF04261 Dyp-type peroxidase family NPA28_19555 PF09375 Imelysin NPA28_19560 PF03239 Iron permease FTR1 family NPA28_19565 PF02581 Thiamine monophosphate synthase NPA28_19570 PF02110 Hydroxyethylthiazole kinase family NPA28_19575 PF03466 LysR substrate binding domain NPA28_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_19580 PF03788 LrgA family NPA28_19585 PF04172 LrgB-like family NPA28_19590 PF12832 MFS_1 like family NPA28_19595 PF09962 Uncharacterized conserved protein (DUF2196) NPA28_19600 PF17785 PUA-like domain NPA28_19600 PF10672 S-adenosylmethionine-dependent methyltransferase NPA28_19605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_19610 PF10924 Protein of unknown function (DUF2711) NPA28_19615 PF02378 Phosphotransferase system, EIIC NPA28_19620 PF00082 Subtilase family NPA28_19625 PF02378 Phosphotransferase system, EIIC NPA28_19625 PF00367 phosphotransferase system, EIIB NPA28_19630 PF03123 CAT RNA binding domain NPA28_19630 PF00874 PRD domain NPA28_19635 PF01501 Glycosyl transferase family 8 NPA28_19640 PF09529 Integral membrane protein (intg_mem_TP0381) NPA28_19645 PF01047 MarR family NPA28_19650 PF01479 S4 domain NPA28_19650 PF00579 tRNA synthetases class I (W and Y) NPA28_19655 PF04389 Peptidase family M28 NPA28_19655 PF02225 PA domain NPA28_19670 PF07690 Major Facilitator Superfamily NPA28_19675 PF04607 Region found in RelA / SpoT proteins NPA28_19680 PF01040 UbiA prenyltransferase family NPA28_19685 PF12459 D-Ala-teichoic acid biosynthesis protein NPA28_19690 PF13193 AMP-binding enzyme C-terminal domain NPA28_19690 PF00501 AMP-binding enzyme NPA28_19695 PF03062 MBOAT, membrane-bound O-acyltransferase family NPA28_19700 PF00550 Phosphopantetheine attachment site NPA28_19705 PF04914 DltD protein NPA28_19710 PF00106 short chain dehydrogenase NPA28_19715 PF01063 Amino-transferase class IV NPA28_19720 PF11975 Family 4 glycosyl hydrolase C-terminal domain NPA28_19720 PF02056 Family 4 glycosyl hydrolase NPA28_19725 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NPA28_19730 PF02378 Phosphotransferase system, EIIC NPA28_19735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NPA28_19740 PF08279 HTH domain NPA28_19740 PF05043 Mga helix-turn-helix domain NPA28_19740 PF00874 PRD domain NPA28_19740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NPA28_19750 PF02245 Methylpurine-DNA glycosylase (MPG) NPA28_19755 PF06628 Catalase-related immune-responsive NPA28_19755 PF00199 Catalase NPA28_19760 PF07690 Major Facilitator Superfamily NPA28_19765 PF12679 ABC-2 family transporter protein NPA28_19770 PF00005 ABC transporter NPA28_19770 PF13732 Domain of unknown function (DUF4162) NPA28_19775 PF13396 Phospholipase_D-nuclease N-terminal NPA28_19785 PF17280 Family of unknown function (DUF5345) NPA28_19790 PF08281 Sigma-70, region 4 NPA28_19790 PF04542 Sigma-70 region 2 NPA28_19795 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NPA28_19800 PF01256 Carbohydrate kinase NPA28_19805 PF00664 ABC transporter transmembrane region NPA28_19805 PF00005 ABC transporter NPA28_19810 PF00005 ABC transporter NPA28_19810 PF00664 ABC transporter transmembrane region NPA28_19815 PF02322 Cytochrome bd terminal oxidase subunit II NPA28_19820 PF01654 Cytochrome bd terminal oxidase subunit I NPA28_19825 PF03390 2-hydroxycarboxylate transporter family NPA28_19830 PF01435 Peptidase family M48 NPA28_19840 PF01522 Polysaccharide deacetylase NPA28_19850 PF00005 ABC transporter NPA28_19850 PF17912 MalK OB fold domain NPA28_19850 PF03459 TOBE domain NPA28_19855 PF13556 PucR C-terminal helix-turn-helix domain NPA28_19860 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NPA28_19860 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NPA28_19865 PF11611 Domain of unknown function (DUF4352) NPA28_19870 PF16363 GDP-mannose 4,6 dehydratase NPA28_19875 PF01161 Phosphatidylethanolamine-binding protein NPA28_19880 PF03466 LysR substrate binding domain NPA28_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NPA28_19895 PF07687 Peptidase dimerisation domain NPA28_19895 PF01546 Peptidase family M20/M25/M40 NPA28_19910 PF04525 LURP-one-related NPA28_19915 PF01717 Cobalamin-independent synthase, Catalytic domain NPA28_19920 PF01717 Cobalamin-independent synthase, Catalytic domain NPA28_19925 PF00158 Sigma-54 interaction domain NPA28_19925 PF00989 PAS fold NPA28_19925 PF02954 Bacterial regulatory protein, Fis family NPA28_19935 PF01144 Coenzyme A transferase NPA28_19940 PF01144 Coenzyme A transferase NPA28_19950 PF08241 Methyltransferase domain NPA28_19955 PF00106 short chain dehydrogenase NPA28_19960 PF01773 Na+ dependent nucleoside transporter N-terminus NPA28_19960 PF07662 Na+ dependent nucleoside transporter C-terminus NPA28_19975 PF00199 Catalase NPA28_19975 PF06628 Catalase-related immune-responsive NPA28_19975 PF18011 C-terminal domain found in long catalases NPA28_19980 PF03600 Citrate transporter NPA28_19990 PF00232 Glycosyl hydrolase family 1 NPA28_19995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPA28_19995 PF00367 phosphotransferase system, EIIB NPA28_19995 PF02378 Phosphotransferase system, EIIC NPA28_20000 PF03123 CAT RNA binding domain NPA28_20000 PF00874 PRD domain NPA28_20010 PF11700 Vacuole effluxer Atg22 like NPA28_20015 PF03880 DbpA RNA binding domain NPA28_20015 PF00271 Helicase conserved C-terminal domain NPA28_20015 PF00270 DEAD/DEAH box helicase NPA28_20020 PF13472 GDSL-like Lipase/Acylhydrolase family NPA28_20045 PF14176 YxiJ-like protein NPA28_20095 PF05593 RHS Repeat NPA28_20100 PF00892 EamA-like transporter family NPA28_20105 PF00582 Universal stress protein family NPA28_20110 PF00232 Glycosyl hydrolase family 1 NPA28_20115 PF00367 phosphotransferase system, EIIB NPA28_20115 PF02378 Phosphotransferase system, EIIC NPA28_20115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NPA28_20145 PF14449 Pre-toxin TG NPA28_20145 PF04740 LXG domain of WXG superfamily NPA28_20155 PF16888 Domain of unknown function (DUF5082) NPA28_20160 PF16369 C-terminal lipocalin-like domain NPA28_20160 PF04616 Glycosyl hydrolases family 43 NPA28_20170 PF09021 HutP NPA28_20175 PF00221 Aromatic amino acid lyase NPA28_20180 PF17392 Urocanase C-terminal domain NPA28_20180 PF01175 Urocanase Rossmann-like domain NPA28_20180 PF17391 Urocanase N-terminal domain NPA28_20185 PF01979 Amidohydrolase family NPA28_20190 PF00491 Arginase family NPA28_20195 PF00324 Amino acid permease NPA28_20200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NPA28_20200 PF00591 Glycosyl transferase family, a/b domain NPA28_20200 PF02885 Glycosyl transferase family, helical bundle domain NPA28_20205 PF01773 Na+ dependent nucleoside transporter N-terminus NPA28_20205 PF07662 Na+ dependent nucleoside transporter C-terminus NPA28_20210 PF01791 DeoC/LacD family aldolase NPA28_20215 PF04198 Putative sugar-binding domain NPA28_20245 PF00005 ABC transporter NPA28_20260 PF06724 Domain of Unknown Function (DUF1206) NPA28_20270 PF03972 MmgE/PrpD family NPA28_20275 PF07687 Peptidase dimerisation domain NPA28_20275 PF01546 Peptidase family M20/M25/M40 NPA28_20280 PF00005 ABC transporter NPA28_20285 PF00528 Binding-protein-dependent transport system inner membrane component NPA28_20290 PF00497 Bacterial extracellular solute-binding proteins, family 3 NPA28_20295 PF00583 Acetyltransferase (GNAT) family NPA28_20300 PF00296 Luciferase-like monooxygenase NPA28_20310 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family NPA28_20345 PF01497 Periplasmic binding protein NPA28_20350 PF06486 Protein of unknown function (DUF1093) NPA28_20355 PF02687 FtsX-like permease family NPA28_20360 PF00005 ABC transporter NPA28_20365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_20370 PF00486 Transcriptional regulatory protein, C terminal NPA28_20370 PF00072 Response regulator receiver domain NPA28_20375 PF01116 Fructose-bisphosphate aldolase class-II NPA28_20380 PF01261 Xylose isomerase-like TIM barrel NPA28_20385 PF01261 Xylose isomerase-like TIM barrel NPA28_20390 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NPA28_20390 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NPA28_20395 PF07690 Major Facilitator Superfamily NPA28_20400 PF01261 Xylose isomerase-like TIM barrel NPA28_20405 PF00205 Thiamine pyrophosphate enzyme, central domain NPA28_20405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NPA28_20405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NPA28_20410 PF00294 pfkB family carbohydrate kinase NPA28_20415 PF04962 KduI/IolB family NPA28_20420 PF00171 Aldehyde dehydrogenase family NPA28_20425 PF00455 DeoR C terminal sensor domain NPA28_20425 PF08220 DeoR-like helix-turn-helix domain NPA28_20430 PF00248 Aldo/keto reductase family NPA28_20440 PF10850 Protein of unknown function (DUF2653) NPA28_20455 PF00083 Sugar (and other) transporter NPA28_20460 PF00183 Hsp90 protein NPA28_20475 PF00440 Bacterial regulatory proteins, tetR family NPA28_20480 PF00171 Aldehyde dehydrogenase family NPA28_20485 PF06271 RDD family NPA28_20490 PF13360 PQQ-like domain NPA28_20490 PF01011 PQQ enzyme repeat NPA28_20490 PF13570 PQQ-like domain NPA28_20495 PF17369 Family of unknown function (DUF5391) NPA28_20500 PF06271 RDD family NPA28_20505 PF04235 Protein of unknown function (DUF418) NPA28_20510 PF07883 Cupin domain NPA28_20515 PF00440 Bacterial regulatory proteins, tetR family NPA28_20520 PF00106 short chain dehydrogenase NPA28_20550 PF04230 Polysaccharide pyruvyl transferase NPA28_20555 PF02595 Glycerate kinase family NPA28_20560 PF07729 FCD domain NPA28_20560 PF00392 Bacterial regulatory proteins, gntR family NPA28_20565 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NPA28_20565 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NPA28_20570 PF02447 GntP family permease NPA28_20575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NPA28_20575 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NPA28_20580 PF00578 AhpC/TSA family NPA28_20585 PF07992 Pyridine nucleotide-disulphide oxidoreductase NPA28_20585 PF13192 Thioredoxin domain NPA28_20600 PF00324 Amino acid permease NPA28_20605 PF06874 Firmicute fructose-1,6-bisphosphatase NPA28_20615 PF02590 Predicted SPOUT methyltransferase NPA28_20620 PF14116 YyzF-like protein NPA28_20630 PF08240 Alcohol dehydrogenase GroES-like domain NPA28_20630 PF00107 Zinc-binding dehydrogenase NPA28_20640 PF10852 Protein of unknown function (DUF2651) NPA28_20660 PF18801 response regulator aspartate phosphatase H, N terminal NPA28_20670 PF00491 Arginase family NPA28_20675 PF00324 Amino acid permease NPA28_20680 PF00202 Aminotransferase class-III NPA28_20685 PF00158 Sigma-54 interaction domain NPA28_20685 PF13426 PAS domain NPA28_20685 PF02954 Bacterial regulatory protein, Fis family NPA28_20690 PF13180 PDZ domain NPA28_20695 PF00753 Metallo-beta-lactamase superfamily NPA28_20700 PF09648 YycH protein NPA28_20705 PF07435 YycH protein NPA28_20710 PF00512 His Kinase A (phospho-acceptor) domain NPA28_20710 PF13426 PAS domain NPA28_20710 PF00672 HAMP domain NPA28_20710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_20715 PF00072 Response regulator receiver domain NPA28_20715 PF00486 Transcriptional regulatory protein, C terminal NPA28_20740 PF00709 Adenylosuccinate synthetase NPA28_20745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_20750 PF00772 DnaB-like helicase N terminal domain NPA28_20750 PF03796 DnaB-like helicase C terminal domain NPA28_20755 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) NPA28_20765 PF14174 YycC-like protein NPA28_20770 PF07690 Major Facilitator Superfamily NPA28_20775 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase NPA28_20780 PF03948 Ribosomal protein L9, C-terminal domain NPA28_20780 PF01281 Ribosomal protein L9, N-terminal domain NPA28_20785 PF01368 DHH family NPA28_20785 PF02272 DHHA1 domain NPA28_20790 PF09991 Predicted membrane protein (DUF2232) NPA28_20800 PF07875 Coat F domain NPA28_20805 PF01638 HxlR-like helix-turn-helix NPA28_20810 PF02833 DHHA2 domain NPA28_20810 PF01368 DHH family NPA28_20820 PF07690 Major Facilitator Superfamily NPA28_20825 PF06445 GyrI-like small molecule binding domain NPA28_20825 PF13411 MerR HTH family regulatory protein NPA28_20840 PF00753 Metallo-beta-lactamase superfamily NPA28_20855 PF01613 Flavin reductase like domain NPA28_20860 PF03176 MMPL family NPA28_20865 PF00196 Bacterial regulatory proteins, luxR family NPA28_20865 PF00072 Response regulator receiver domain NPA28_20870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NPA28_20870 PF07730 Histidine kinase NPA28_20885 PF06445 GyrI-like small molecule binding domain NPA28_20885 PF13411 MerR HTH family regulatory protein NPA28_20890 PF04474 Protein of unknown function (DUF554) NPA28_20905 PF13411 MerR HTH family regulatory protein NPA28_20910 PF00892 EamA-like transporter family NPA28_20915 PF03190 Protein of unknown function, DUF255 NPA28_20920 PF02517 CPBP intramembrane metalloprotease NPA28_20925 PF00083 Sugar (and other) transporter NPA28_20930 PF14602 Hexapeptide repeat of succinyl-transferase NPA28_20930 PF12464 Maltose acetyltransferase NPA28_20935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NPA28_20940 PF00356 Bacterial regulatory proteins, lacI family NPA28_20940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NPA28_20945 PF03372 Endonuclease/Exonuclease/phosphatase family NPA28_20950 PF01084 Ribosomal protein S18 NPA28_20955 PF00436 Single-strand binding protein family NPA28_20960 PF01250 Ribosomal protein S6 NPA28_20965 PF01926 50S ribosome-binding GTPase NPA28_20965 PF06071 Protein of unknown function (DUF933) NPA28_20970 PF00384 Molybdopterin oxidoreductase NPA28_20970 PF01568 Molydopterin dinucleotide binding domain NPA28_20970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NPA28_20975 PF06107 Bacterial protein of unknown function (DUF951) NPA28_20990 PF17762 HTH domain found in ParB protein NPA28_20990 PF02195 ParB-like nuclease domain NPA28_20995 PF13614 AAA domain NPA28_21000 PF06713 Bacterial PH domain NPA28_21005 PF17762 HTH domain found in ParB protein NPA28_21005 PF02195 ParB-like nuclease domain NPA28_21010 PF02527 rRNA small subunit methyltransferase G NPA28_21015 PF01134 Glucose inhibited division protein A NPA28_21015 PF13932 GidA associated domain NPA28_21020 PF01926 50S ribosome-binding GTPase NPA28_21020 PF12631 MnmE helical domain NPA28_21020 PF10396 GTP-binding protein TrmE N-terminus NPA28_21025 PF01424 R3H domain NPA28_21025 PF14804 Jag N-terminus NPA28_21030 PF02096 60Kd inner membrane protein NPA28_21035 PF00825 Ribonuclease P NPA28_21040 PF00468 Ribosomal protein L34