locus-tag class description N288_00005 PF00308 Bacterial dnaA protein N288_00005 PF08299 Bacterial dnaA protein helix-turn-helix N288_00005 PF11638 DnaA N-terminal domain N288_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain N288_00010 PF02767 DNA polymerase III beta subunit, central domain N288_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain N288_00025 PF02463 RecF/RecN/SMC N terminal domain N288_00030 PF04025 Domain of unknown function (DUF370) N288_00035 PF00986 DNA gyrase B subunit, carboxyl terminus N288_00035 PF00204 DNA gyrase B N288_00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_00035 PF01751 Toprim domain N288_00040 PF00521 DNA gyrase/topoisomerase IV, subunit A N288_00040 PF03989 DNA gyrase C-terminal domain, beta-propeller N288_00045 PF01966 HD domain N288_00045 PF11871 Domain of unknown function (DUF3391) N288_00075 PF14175 YaaC-like Protein N288_00080 PF00571 CBS domain N288_00080 PF00478 IMP dehydrogenase / GMP reductase domain N288_00085 PF00768 D-alanyl-D-alanine carboxypeptidase N288_00085 PF07943 Penicillin-binding protein 5, C-terminal domain N288_00090 PF01680 SOR/SNZ family N288_00095 PF01174 SNO glutamine amidotransferase family N288_00105 PF02403 Seryl-tRNA synthetase N-terminal domain N288_00105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N288_00115 PF01712 Deoxynucleoside kinase N288_00120 PF01712 Deoxynucleoside kinase N288_00125 PF00704 Glycosyl hydrolases family 18 N288_00125 PF01476 LysM domain N288_00130 PF00857 Isochorismatase family N288_00135 PF14437 MafB19-like deaminase N288_00140 PF12169 DNA polymerase III subunits gamma and tau domain III N288_00145 PF02575 YbaB/EbfC DNA-binding family N288_00150 PF02132 RecR protein N288_00150 PF13662 Toprim domain N288_00155 PF10704 Protein of unknown function (DUF2508) N288_00160 PF07441 SigmaK-factor processing regulatory protein BofA N288_00195 PF10764 Inhibitor of sigma-G Gin N288_00200 PF01276 Orn/Lys/Arg decarboxylase, major domain N288_00200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain N288_00205 PF02223 Thymidylate kinase N288_00210 PF06153 Cyclic-di-AMP receptor N288_00215 PF03885 Protein of unknown function (DUF327) N288_00220 PF09115 DNA polymerase III, delta subunit, C terminal N288_00225 PF04468 PSP1 C-terminal conserved region N288_00230 PF06156 Initiation control protein YabA N288_00235 PF05175 Methyltransferase small domain N288_00240 PF01541 GIY-YIG catalytic domain N288_00245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N288_00250 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin N288_00250 PF18277 AbrB C-terminal domain N288_00255 PF08264 Anticodon-binding domain of tRNA N288_00255 PF09334 tRNA synthetases class I (M) N288_00255 PF01588 Putative tRNA binding domain N288_00260 PF01026 TatD related DNase N288_00270 PF06725 3D domain N288_00270 PF03990 G5-linked-Ubiquitin-like domain N288_00270 PF07501 G5 domain N288_00275 PF13331 Domain of unknown function (DUF4093) N288_00275 PF13662 Toprim domain N288_00280 PF00398 Ribosomal RNA adenine dimethylase N288_00285 PF05582 YabG peptidase U57 N288_00295 PF06257 Biofilm formation stimulator VEG N288_00300 PF00269 Small, acid-soluble spore proteins, alpha/beta type N288_00305 PF00288 GHMP kinases N terminal domain N288_00305 PF08544 GHMP kinases C terminal N288_00310 PF00156 Phosphoribosyl transferase domain N288_00310 PF09182 Bacterial purine repressor, N-terminal N288_00315 PF01042 Endoribonuclease L-PSP N288_00320 PF04026 SpoVG N288_00330 PF00132 Bacterial transferase hexapeptide (six repeats) N288_00330 PF00483 Nucleotidyl transferase N288_00335 PF14572 Phosphoribosyl synthetase-associated domain N288_00335 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase N288_00340 PF14693 Ribosomal protein TL5, C-terminal domain N288_00340 PF01386 Ribosomal L25p family N288_00345 PF01195 Peptidyl-tRNA hydrolase N288_00350 PF10955 Protein of unknown function (DUF2757) N288_00355 PF17757 UvrB interaction domain N288_00355 PF03461 TRCF domain N288_00355 PF00271 Helicase conserved C-terminal domain N288_00355 PF02559 CarD-like/TRCF domain N288_00355 PF00270 DEAD/DEAH box helicase N288_00360 PF15714 Stage V sporulation protein T C-terminal, transcription factor N288_00360 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin N288_00365 PF01943 Polysaccharide biosynthesis protein N288_00365 PF14667 Polysaccharide biosynthesis C-terminal domain N288_00370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N288_00370 PF03819 MazG nucleotide pyrophosphohydrolase domain N288_00375 PF01479 S4 domain N288_00380 PF07873 YabP family N288_00395 PF00575 S1 RNA binding domain N288_00410 PF07228 Stage II sporulation protein E (SpoIIE) N288_00415 PF00092 von Willebrand factor type A domain N288_00420 PF00069 Protein kinase domain N288_00425 PF09179 TilS substrate binding domain N288_00425 PF01171 PP-loop family N288_00425 PF11734 TilS substrate C-terminal domain N288_00435 PF01434 Peptidase family M41 N288_00435 PF00004 ATPase family associated with various cellular activities (AAA) N288_00435 PF06480 FtsH Extracellular N288_00435 PF17862 AAA+ lid domain N288_00440 PF03309 Type III pantothenate kinase N288_00445 PF01430 Hsp33 protein N288_00450 PF13145 PPIC-type PPIASE domain N288_00455 PF00291 Pyridoxal-phosphate dependent enzyme N288_00460 PF04715 Anthranilate synthase component I, N terminal region N288_00460 PF00425 chorismate binding enzyme N288_00465 PF00117 Glutamine amidotransferase class-I N288_00470 PF01063 Amino-transferase class IV N288_00475 PF00809 Pterin binding enzyme N288_00480 PF02152 Dihydroneopterin aldolase N288_00485 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N288_00490 PF01381 Helix-turn-helix N288_00495 PF01207 Dihydrouridine synthase (Dus) N288_00500 PF00152 tRNA synthetases class II (D, K and N) N288_00500 PF01336 OB-fold nucleic acid binding domain N288_00585 PF05848 CtsR N-terminal HTH domain N288_00585 PF17727 CtsR C-terminal dimerization domain N288_00590 PF02151 UvrB/uvrC motif N288_00595 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain N288_00600 PF10431 C-terminal, D2-small domain, of ClpB protein N288_00600 PF02861 Clp amino terminal domain, pathogenicity island component N288_00600 PF17871 AAA lid domain N288_00600 PF07724 AAA domain (Cdc48 subfamily) N288_00600 PF00004 ATPase family associated with various cellular activities (AAA) N288_00605 PF18073 Rubredoxin metal binding domain N288_00610 PF02457 DisA bacterial checkpoint controller nucleotide-binding N288_00610 PF10635 DisA bacterial checkpoint controller linker region N288_00620 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase N288_00625 PF02542 YgbB family N288_00630 PF00749 tRNA synthetases class I (E and Q), catalytic domain N288_00635 PF00132 Bacterial transferase hexapeptide (six repeats) N288_00635 PF06426 Serine acetyltransferase, N-terminal N288_00640 PF01406 tRNA synthetases class I (C) catalytic domain N288_00640 PF09190 DALR domain N288_00645 PF00636 Ribonuclease III domain N288_00650 PF08032 RNA 2'-O ribose methyltransferase substrate binding N288_00650 PF00588 SpoU rRNA Methylase family N288_00655 PF05991 YacP-like NYN domain N288_00660 PF04542 Sigma-70 region 2 N288_00660 PF08281 Sigma-70, region 4 N288_00665 PF00471 Ribosomal protein L33 N288_00670 PF00584 SecE/Sec61-gamma subunits of protein translocation complex N288_00675 PF02357 Transcription termination factor nusG N288_00675 PF00467 KOW motif N288_00680 PF00687 Ribosomal protein L1p/L10e family N288_00685 PF00466 Ribosomal protein L10 N288_00690 PF16320 Ribosomal protein L7/L12 dimerisation domain N288_00690 PF00542 Ribosomal protein L7/L12 C-terminal domain N288_00695 PF05175 Methyltransferase small domain N288_00705 PF04560 RNA polymerase Rpb2, domain 7 N288_00705 PF00562 RNA polymerase Rpb2, domain 6 N288_00705 PF10385 RNA polymerase beta subunit external 1 domain N288_00705 PF04565 RNA polymerase Rpb2, domain 3 N288_00705 PF04561 RNA polymerase Rpb2, domain 2 N288_00705 PF04563 RNA polymerase beta subunit N288_00710 PF04998 RNA polymerase Rpb1, domain 5 N288_00710 PF05000 RNA polymerase Rpb1, domain 4 N288_00710 PF04983 RNA polymerase Rpb1, domain 3 N288_00710 PF00623 RNA polymerase Rpb1, domain 2 N288_00710 PF04997 RNA polymerase Rpb1, domain 1 N288_00715 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family N288_00720 PF00164 Ribosomal protein S12/S23 N288_00725 PF00177 Ribosomal protein S7p/S5e N288_00730 PF00009 Elongation factor Tu GTP binding domain N288_00730 PF14492 Elongation Factor G, domain II N288_00730 PF03144 Elongation factor Tu domain 2 N288_00730 PF00679 Elongation factor G C-terminus N288_00730 PF03764 Elongation factor G, domain IV N288_00735 PF00009 Elongation factor Tu GTP binding domain N288_00735 PF03144 Elongation factor Tu domain 2 N288_00735 PF03143 Elongation factor Tu C-terminal domain N288_00740 PF00338 Ribosomal protein S10p/S20e N288_00745 PF00297 Ribosomal protein L3 N288_00750 PF00573 Ribosomal protein L4/L1 family N288_00755 PF00276 Ribosomal protein L23 N288_00760 PF00181 Ribosomal Proteins L2, RNA binding domain N288_00760 PF03947 Ribosomal Proteins L2, C-terminal domain N288_00765 PF00203 Ribosomal protein S19 N288_00770 PF00237 Ribosomal protein L22p/L17e N288_00775 PF00189 Ribosomal protein S3, C-terminal domain N288_00775 PF07650 KH domain N288_00780 PF00252 Ribosomal protein L16p/L10e N288_00785 PF00831 Ribosomal L29 protein N288_00790 PF00366 Ribosomal protein S17 N288_00795 PF00238 Ribosomal protein L14p/L23e N288_00800 PF00467 KOW motif N288_00800 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 N288_00805 PF00673 ribosomal L5P family C-terminus N288_00805 PF00281 Ribosomal protein L5 N288_00810 PF00410 Ribosomal protein S8 N288_00815 PF00347 Ribosomal protein L6 N288_00820 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast N288_00825 PF00333 Ribosomal protein S5, N-terminal domain N288_00825 PF03719 Ribosomal protein S5, C-terminal domain N288_00830 PF00327 Ribosomal protein L30p/L7e N288_00835 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A N288_00840 PF00344 SecY translocase N288_00845 PF05191 Adenylate kinase, active site lid N288_00850 PF00557 Metallopeptidase family M24 N288_00860 PF01176 Translation initiation factor 1A / IF-1 N288_00865 PF00444 Ribosomal protein L36 N288_00870 PF00416 Ribosomal protein S13/S18 N288_00875 PF00411 Ribosomal protein S11 N288_00880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain N288_00880 PF01000 RNA polymerase Rpb3/RpoA insert domain N288_00880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain N288_00885 PF01196 Ribosomal protein L17 N288_00895 PF00005 ABC transporter N288_00900 PF00005 ABC transporter N288_00905 PF02361 Cobalt transport protein N288_00910 PF01416 tRNA pseudouridine synthase N288_00915 PF00572 Ribosomal protein L13 N288_00920 PF00380 Ribosomal protein S9/S16 N288_00930 PF01520 N-acetylmuramoyl-L-alanine amidase N288_00940 PF10609 NUBPL iron-transfer P-loop NTPase N288_00945 PF17898 Spore germination GerD central core domain N288_00950 PF14089 KinB-signalling pathway activation in sporulation N288_00955 PF01522 Polysaccharide deacetylase N288_01030 PF00491 Arginase family N288_01040 PF08281 Sigma-70, region 4 N288_01040 PF04542 Sigma-70 region 2 N288_01045 PF13490 Putative zinc-finger N288_01050 PF02457 DisA bacterial checkpoint controller nucleotide-binding N288_01055 PF07949 YbbR-like protein N288_01060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N288_01060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N288_01060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N288_01060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N288_01065 PF01380 SIS domain N288_01080 PF12650 Domain of unknown function (DUF3784) N288_01120 PF04239 Protein of unknown function (DUF421) N288_01125 PF00300 Histidine phosphatase superfamily (branch 1) N288_01135 PF02416 mttA/Hcf106 family N288_01140 PF02673 Bacitracin resistance protein BacA N288_01145 PF00375 Sodium:dicarboxylate symporter family N288_01150 PF03471 Transporter associated domain N288_01150 PF00999 Sodium/hydrogen exchanger family N288_01150 PF02080 TrkA-C domain N288_01155 PF00589 Phage integrase family N288_01165 PF10282 Lactonase, 7-bladed beta-propeller N288_01175 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain N288_01175 PF01740 STAS domain N288_01190 PF08892 YqcI/YcgG family N288_01195 PF05552 Conserved TM helix N288_01200 PF04542 Sigma-70 region 2 N288_01200 PF08281 Sigma-70, region 4 N288_01210 PF02386 Cation transport protein N288_01215 PF13302 Acetyltransferase (GNAT) domain N288_01220 PF00781 Diacylglycerol kinase catalytic domain N288_01230 PF00210 Ferritin-like domain N288_01235 PF09335 SNARE associated Golgi protein N288_01245 PF03551 Transcriptional regulator PadR-like family N288_01250 PF01925 Sulfite exporter TauE/SafE N288_01255 PF03485 Arginyl tRNA synthetase N terminal domain N288_01255 PF05746 DALR anticodon binding domain N288_01255 PF00750 tRNA synthetases class I (R) N288_01260 PF01098 Cell cycle protein N288_01275 PF07690 Major Facilitator Superfamily N288_01280 PF01497 Periplasmic binding protein N288_01285 PF01032 FecCD transport family N288_01290 PF00005 ABC transporter N288_01295 PF03186 CobD/Cbib protein N288_01300 PF00155 Aminotransferase class I and II N288_01305 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase N288_01310 PF07685 CobB/CobQ-like glutamine amidotransferase domain N288_01315 PF02654 Cobalamin-5-phosphate synthase N288_01325 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase N288_01330 PF01923 Cobalamin adenosyltransferase N288_01345 PF00300 Histidine phosphatase superfamily (branch 1) N288_01365 PF00893 Small Multidrug Resistance protein N288_01370 PF00893 Small Multidrug Resistance protein N288_01375 PF00356 Bacterial regulatory proteins, lacI family N288_01390 PF00528 Binding-protein-dependent transport system inner membrane component N288_01395 PF00528 Binding-protein-dependent transport system inner membrane component N288_01400 PF12681 Glyoxalase-like domain N288_01410 PF00916 Sulfate permease family N288_01410 PF01740 STAS domain N288_01415 PF00579 tRNA synthetases class I (W and Y) N288_01415 PF01479 S4 domain N288_01420 PF00375 Sodium:dicarboxylate symporter family N288_01430 PF07478 D-ala D-ala ligase C-terminus N288_01430 PF01820 D-ala D-ala ligase N-terminus N288_01435 PF08245 Mur ligase middle domain N288_01435 PF02875 Mur ligase family, glutamate ligase domain N288_01435 PF01225 Mur ligase family, catalytic domain N288_01445 PF04542 Sigma-70 region 2 N288_01445 PF08281 Sigma-70, region 4 N288_01465 PF00561 alpha/beta hydrolase fold N288_01475 PF00271 Helicase conserved C-terminal domain N288_01475 PF00270 DEAD/DEAH box helicase N288_01480 PF03851 UV-endonuclease UvdE N288_01485 PF03703 Bacterial PH domain N288_01490 PF03703 Bacterial PH domain N288_01495 PF01694 Rhomboid family N288_01500 PF01648 4'-phosphopantetheinyl transferase superfamily N288_01515 PF01402 Ribbon-helix-helix protein, copG family N288_01520 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system N288_01525 PF01740 STAS domain N288_01525 PF08678 Rsbr N terminal N288_01530 PF01740 STAS domain N288_01535 PF13581 Histidine kinase-like ATPase domain N288_01540 PF07228 Stage II sporulation protein E (SpoIIE) N288_01540 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain N288_01545 PF01740 STAS domain N288_01550 PF13581 Histidine kinase-like ATPase domain N288_01555 PF04545 Sigma-70, region 4 N288_01555 PF04542 Sigma-70 region 2 N288_01555 PF04539 Sigma-70 region 3 N288_01560 PF07228 Stage II sporulation protein E (SpoIIE) N288_01565 PF17674 HHH domain N288_01565 PF16921 Tex protein YqgF-like domain N288_01565 PF09371 Tex-like protein N-terminal domain N288_01565 PF00575 S1 RNA binding domain N288_01575 PF10263 SprT-like family N288_01650 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_01660 PF00731 AIR carboxylase N288_01665 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain N288_01665 PF02222 ATP-grasp domain N288_01670 PF00206 Lyase N288_01670 PF10397 Adenylosuccinate lyase C-terminus N288_01675 PF01259 SAICAR synthetase N288_01680 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase N288_01690 PF02769 AIR synthase related protein, C-terminal domain N288_01690 PF00586 AIR synthase related protein, N-terminal domain N288_01690 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain N288_01695 PF00156 Phosphoribosyl transferase domain N288_01700 PF00586 AIR synthase related protein, N-terminal domain N288_01700 PF02769 AIR synthase related protein, C-terminal domain N288_01705 PF00551 Formyl transferase N288_01710 PF01808 AICARFT/IMPCHase bienzyme N288_01710 PF02142 MGS-like domain N288_01715 PF02843 Phosphoribosylglycinamide synthetase, C domain N288_01715 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain N288_01715 PF02844 Phosphoribosylglycinamide synthetase, N domain N288_01725 PF13382 Adenine deaminase C-terminal domain N288_01725 PF01979 Amidohydrolase family N288_01730 PF11258 Protein of unknown function (DUF3048) N-terminal domain N288_01730 PF17479 Protein of unknown function (DUF3048) C-terminal domain N288_01735 PF01371 Trp repressor protein N288_01745 PF01884 PcrB family N288_01750 PF00580 UvrD/REP helicase N-terminal domain N288_01750 PF13361 UvrD-like helicase C-terminal domain N288_01755 PF03120 NAD-dependent DNA ligase OB-fold domain N288_01755 PF12826 Helix-hairpin-helix motif N288_01755 PF03119 NAD-dependent DNA ligase C4 zinc finger domain N288_01755 PF01653 NAD-dependent DNA ligase adenylation domain N288_01755 PF00533 BRCA1 C Terminus (BRCT) domain N288_01760 PF07537 CamS sex pheromone cAM373 precursor N288_01770 PF00171 Aldehyde dehydrogenase family N288_01775 PF00474 Sodium:solute symporter family N288_01780 PF00474 Sodium:solute symporter family N288_01785 PF00463 Isocitrate lyase family N288_01790 PF07997 Protein of unknown function (DUF1694) N288_01805 PF04294 VanW like protein N288_01815 PF07690 Major Facilitator Superfamily N288_01820 PF02686 Glu-tRNAGln amidotransferase C subunit N288_01825 PF01425 Amidase N288_01830 PF02637 GatB domain N288_01830 PF02934 GatB/GatE catalytic domain N288_01850 PF00375 Sodium:dicarboxylate symporter family N288_01855 PF02660 Glycerol-3-phosphate acyltransferase N288_01865 PF10502 Signal peptidase, peptidase S26 N288_01870 PF01266 FAD dependent oxidoreductase N288_01890 PF01037 Lrp/AsnC ligand binding domain N288_01900 PF00857 Isochorismatase family N288_01905 PF04542 Sigma-70 region 2 N288_01905 PF08281 Sigma-70, region 4 N288_01930 PF02386 Cation transport protein N288_01950 PF13302 Acetyltransferase (GNAT) domain N288_01955 PF00440 Bacterial regulatory proteins, tetR family N288_01955 PF17922 Tetracyclin repressor-like, C-terminal domain N288_01965 PF00781 Diacylglycerol kinase catalytic domain N288_01980 PF01938 TRAM domain N288_01980 PF02475 Met-10+ like-protein N288_01980 PF05958 tRNA (Uracil-5-)-methyltransferase N288_01985 PF04960 Glutaminase N288_01990 PF16925 Tetracyclin repressor-like, C-terminal domain N288_01990 PF00440 Bacterial regulatory proteins, tetR family N288_01995 PF07690 Major Facilitator Superfamily N288_02000 PF00881 Nitroreductase family N288_02005 PF09557 Domain of unknown function (DUF2382) N288_02005 PF11181 Heat induced stress protein YflT N288_02010 PF01810 LysE type translocator N288_02015 PF12728 Helix-turn-helix domain N288_02050 PF00478 IMP dehydrogenase / GMP reductase domain N288_02055 PF08281 Sigma-70, region 4 N288_02055 PF04542 Sigma-70 region 2 N288_02075 PF04542 Sigma-70 region 2 N288_02075 PF08281 Sigma-70, region 4 N288_02085 PF07690 Major Facilitator Superfamily N288_02090 PF01047 MarR family N288_02095 PF12419 SNF2 Helicase protein N288_02095 PF00271 Helicase conserved C-terminal domain N288_02095 PF00176 SNF2 family N-terminal domain N288_02100 PF12833 Helix-turn-helix domain N288_02100 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N288_02100 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N288_02100 PF02805 Metal binding domain of Ada N288_02105 PF00730 HhH-GPD superfamily base excision DNA repair protein N288_02105 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain N288_02110 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N288_02110 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N288_02125 PF00356 Bacterial regulatory proteins, lacI family N288_02130 PF00288 GHMP kinases N terminal domain N288_02130 PF08544 GHMP kinases C terminal N288_02130 PF10509 Galactokinase galactose-binding signature N288_02135 PF16363 GDP-mannose 4,6 dehydratase N288_02140 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain N288_02140 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain N288_02145 PF01263 Aldose 1-epimerase N288_02165 PF16884 N-terminal domain of oxidoreductase N288_02165 PF00107 Zinc-binding dehydrogenase N288_02170 PF12833 Helix-turn-helix domain N288_02170 PF00072 Response regulator receiver domain N288_02175 PF06580 Histidine kinase N288_02175 PF02743 Cache domain N288_02175 PF00672 HAMP domain N288_02175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_02180 PF13416 Bacterial extracellular solute-binding protein N288_02185 PF00528 Binding-protein-dependent transport system inner membrane component N288_02190 PF00528 Binding-protein-dependent transport system inner membrane component N288_02195 PF02836 Glycosyl hydrolases family 2, TIM barrel domain N288_02195 PF02929 Beta galactosidase small chain N288_02195 PF00703 Glycosyl hydrolases family 2 N288_02195 PF02837 Glycosyl hydrolases family 2, sugar binding domain N288_02195 PF16353 Domain of unknown function(DUF4981) N288_02200 PF16874 Glycosyl hydrolase family 36 C-terminal domain N288_02200 PF16875 Glycosyl hydrolase family 36 N-terminal domain N288_02210 PF00392 Bacterial regulatory proteins, gntR family N288_02210 PF07729 FCD domain N288_02215 PF01565 FAD binding domain N288_02215 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N288_02220 PF01758 Sodium Bile acid symporter family N288_02225 PF01435 Peptidase family M48 N288_02230 PF08876 Domain of unknown function (DUF1836) N288_02235 PF07690 Major Facilitator Superfamily N288_02250 PF13732 Domain of unknown function (DUF4162) N288_02250 PF00005 ABC transporter N288_02265 PF08281 Sigma-70, region 4 N288_02265 PF04542 Sigma-70 region 2 N288_02280 PF04228 Putative neutral zinc metallopeptidase N288_02295 PF14602 Hexapeptide repeat of succinyl-transferase N288_02295 PF12464 Maltose acetyltransferase N288_02315 PF00072 Response regulator receiver domain N288_02315 PF00486 Transcriptional regulatory protein, C terminal N288_02320 PF00512 His Kinase A (phospho-acceptor) domain N288_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_02320 PF00672 HAMP domain N288_02320 PF13426 PAS domain N288_02325 PF08240 Alcohol dehydrogenase GroES-like domain N288_02325 PF00107 Zinc-binding dehydrogenase N288_02350 PF04012 PspA/IM30 family N288_02355 PF00171 Aldehyde dehydrogenase family N288_02385 PF00293 NUDIX domain N288_02400 PF02566 OsmC-like protein N288_02405 PF01047 MarR family N288_02465 PF06906 Protein of unknown function (DUF1272) N288_02475 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA N288_02485 PF00056 lactate/malate dehydrogenase, NAD binding domain N288_02485 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain N288_02505 PF00583 Acetyltransferase (GNAT) family N288_02530 PF00990 Diguanylate cyclase, GGDEF domain N288_02530 PF07694 5TMR of 5TMR-LYT N288_02535 PF00313 'Cold-shock' DNA-binding domain N288_02540 PF00067 Cytochrome P450 N288_02555 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) N288_02560 PF04011 LemA family N288_02590 PF02554 Carbon starvation protein CstA N288_02600 PF13419 Haloacid dehalogenase-like hydrolase N288_02605 PF10710 Protein of unknown function (DUF2512) N288_02615 PF02535 ZIP Zinc transporter N288_02625 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain N288_02625 PF12708 Pectate lyase superfamily protein N288_02630 PF01871 AMMECR1 N288_02630 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase N288_02635 PF01546 Peptidase family M20/M25/M40 N288_02640 PF12849 PBP superfamily domain N288_02655 PF01709 Transcriptional regulator N288_02685 PF01544 CorA-like Mg2+ transporter protein N288_02695 PF03707 Bacterial signalling protein N terminal repeat N288_02695 PF00990 Diguanylate cyclase, GGDEF domain N288_02695 PF00563 EAL domain N288_02700 PF07739 TipAS antibiotic-recognition domain N288_02700 PF13411 MerR HTH family regulatory protein N288_02705 PF01638 HxlR-like helix-turn-helix N288_02710 PF07690 Major Facilitator Superfamily N288_02715 PF00248 Aldo/keto reductase family N288_02720 PF00092 von Willebrand factor type A domain N288_02725 PF00255 Glutathione peroxidase N288_02740 PF00854 POT family N288_02745 PF00881 Nitroreductase family N288_02760 PF00749 tRNA synthetases class I (E and Q), catalytic domain N288_02760 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain N288_02790 PF12146 Serine aminopeptidase, S33 N288_02795 PF07690 Major Facilitator Superfamily N288_02800 PF10672 S-adenosylmethionine-dependent methyltransferase N288_02800 PF17785 PUA-like domain N288_02805 PF11181 Heat induced stress protein YflT N288_02805 PF09557 Domain of unknown function (DUF2382) N288_02810 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal N288_02810 PF01926 50S ribosome-binding GTPase N288_02815 PF05360 yiaA/B two helix domain N288_02820 PF00005 ABC transporter N288_02830 PF07730 Histidine kinase N288_02830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_02835 PF00072 Response regulator receiver domain N288_02835 PF00196 Bacterial regulatory proteins, luxR family N288_02845 PF00696 Amino acid kinase family N288_02845 PF13840 ACT domain N288_02870 PF01593 Flavin containing amine oxidoreductase N288_02885 PF01593 Flavin containing amine oxidoreductase N288_02890 PF00535 Glycosyl transferase family 2 N288_02900 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term N288_02900 PF12833 Helix-turn-helix domain N288_02905 PF00106 short chain dehydrogenase N288_02910 PF13649 Methyltransferase domain N288_02930 PF07563 Protein of unknown function (DUF1541) N288_02940 PF01381 Helix-turn-helix N288_02950 PF00005 ABC transporter N288_02975 PF04542 Sigma-70 region 2 N288_02975 PF08281 Sigma-70, region 4 N288_02985 PF00300 Histidine phosphatase superfamily (branch 1) N288_03000 PF13396 Phospholipase_D-nuclease N-terminal N288_03005 PF13732 Domain of unknown function (DUF4162) N288_03005 PF00005 ABC transporter N288_03010 PF12679 ABC-2 family transporter protein N288_03025 PF12867 DinB superfamily N288_03030 PF01872 RibD C-terminal domain N288_03045 PF00512 His Kinase A (phospho-acceptor) domain N288_03045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_03050 PF00486 Transcriptional regulatory protein, C terminal N288_03050 PF00072 Response regulator receiver domain N288_03055 PF04235 Protein of unknown function (DUF418) N288_03060 PF00293 NUDIX domain N288_03070 PF12697 Alpha/beta hydrolase family N288_03070 PF08241 Methyltransferase domain N288_03075 PF00999 Sodium/hydrogen exchanger family N288_03080 PF06738 Putative threonine/serine exporter N288_03085 PF12821 Threonine/Serine exporter, ThrE N288_03085 PF06738 Putative threonine/serine exporter N288_03090 PF00005 ABC transporter N288_03090 PF00664 ABC transporter transmembrane region N288_03095 PF00664 ABC transporter transmembrane region N288_03095 PF00005 ABC transporter N288_03100 PF01235 Sodium:alanine symporter family N288_03115 PF00892 EamA-like transporter family N288_03120 PF01037 Lrp/AsnC ligand binding domain N288_03125 PF02581 Thiamine monophosphate synthase N288_03130 PF01266 FAD dependent oxidoreductase N288_03135 PF05690 Thiazole biosynthesis protein ThiG N288_03135 PF02597 ThiS family N288_03140 PF05690 Thiazole biosynthesis protein ThiG N288_03145 PF00899 ThiF family N288_03150 PF00872 Transposase, Mutator family N288_03165 PF13823 Alcohol dehydrogenase GroES-associated N288_03165 PF08240 Alcohol dehydrogenase GroES-like domain N288_03165 PF00107 Zinc-binding dehydrogenase N288_03170 PF01425 Amidase N288_03175 PF00271 Helicase conserved C-terminal domain N288_03175 PF00270 DEAD/DEAH box helicase N288_03180 PF01425 Amidase N288_03195 PF03551 Transcriptional regulator PadR-like family N288_03210 PF03422 Carbohydrate binding module (family 6) N288_03210 PF13199 Glycosyl hydrolase family 66 N288_03210 PF16990 Carbohydrate binding module (family 35) N288_03215 PF13802 Galactose mutarotase-like N288_03215 PF01055 Glycosyl hydrolases family 31 N288_03215 PF17137 Domain of unknown function (DUF5110) N288_03215 PF16338 Domain of unknown function (DUF4968) N288_03225 PF01266 FAD dependent oxidoreductase N288_03225 PF00355 Rieske [2Fe-2S] domain N288_03235 PF03845 Spore germination protein N288_03240 PF03323 Bacillus/Clostridium GerA spore germination protein N288_03245 PF05504 Spore germination B3/ GerAC like, C-terminal N288_03265 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain N288_03265 PF06827 Zinc finger found in FPG and IleRS N288_03265 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain N288_03275 PF13243 Squalene-hopene cyclase C-terminal domain N288_03275 PF13249 Squalene-hopene cyclase N-terminal domain N288_03300 PF07730 Histidine kinase N288_03300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_03305 PF00072 Response regulator receiver domain N288_03305 PF00196 Bacterial regulatory proteins, luxR family N288_03330 PF12848 ABC transporter N288_03330 PF16326 ABC transporter C-terminal domain N288_03330 PF00005 ABC transporter N288_03335 PF05067 Manganese containing catalase N288_03340 PF12652 CotJB protein N288_03345 PF11007 Spore coat associated protein JA (CotJA) N288_03355 PF01943 Polysaccharide biosynthesis protein N288_03380 PF01544 CorA-like Mg2+ transporter protein N288_03390 PF08361 MAATS-type transcriptional repressor, C-terminal region N288_03390 PF00440 Bacterial regulatory proteins, tetR family N288_03395 PF03061 Thioesterase superfamily N288_03410 PF01545 Cation efflux family N288_03410 PF16916 Dimerisation domain of Zinc Transporter N288_03420 PF00902 Sec-independent protein translocase protein (TatC) N288_03425 PF02416 mttA/Hcf106 family N288_03430 PF00732 GMC oxidoreductase N288_03430 PF05199 GMC oxidoreductase N288_03435 PF13618 Gluconate 2-dehydrogenase subunit 3 N288_03440 PF00032 Cytochrome b(C-terminal)/b6/petD N288_03440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N288_03445 PF02535 ZIP Zinc transporter N288_03460 PF00293 NUDIX domain N288_03485 PF01027 Inhibitor of apoptosis-promoting Bax1 N288_03490 PF01741 Large-conductance mechanosensitive channel, MscL N288_03500 PF14489 QueF-like protein N288_03505 PF02592 Putative vitamin uptake transporter N288_03515 PF00474 Sodium:solute symporter family N288_03520 PF00708 Acylphosphatase N288_03530 PF02073 Thermophilic metalloprotease (M29) N288_03535 PF07690 Major Facilitator Superfamily N288_03540 PF01751 Toprim domain N288_03540 PF01131 DNA topoisomerase N288_03550 PF12841 YvrJ protein family N288_03560 PF01066 CDP-alcohol phosphatidyltransferase N288_03565 PF00221 Aromatic amino acid lyase N288_03575 PF00578 AhpC/TSA family N288_03575 PF10417 C-terminal domain of 1-Cys peroxiredoxin N288_03580 PF00578 AhpC/TSA family N288_03580 PF10417 C-terminal domain of 1-Cys peroxiredoxin N288_03585 PF00474 Sodium:solute symporter family N288_03590 PF09350 Domain of unknown function (DUF1992) N288_03595 PF04239 Protein of unknown function (DUF421) N288_03600 PF01618 MotA/TolQ/ExbB proton channel family N288_03605 PF00691 OmpA family N288_03605 PF13677 Membrane MotB of proton-channel complex MotA/MotB N288_03610 PF07690 Major Facilitator Superfamily N288_03615 PF00872 Transposase, Mutator family N288_03620 PF07690 Major Facilitator Superfamily N288_03630 PF01235 Sodium:alanine symporter family N288_03635 PF00294 pfkB family carbohydrate kinase N288_03640 PF04227 Indigoidine synthase A like protein N288_03645 PF04203 Sortase domain N288_03650 PF08671 Anti-repressor SinI N288_03650 PF01381 Helix-turn-helix N288_03660 PF12389 Camelysin metallo-endopeptidase N288_03680 PF08671 Anti-repressor SinI N288_03680 PF01381 Helix-turn-helix N288_03685 PF00376 MerR family regulatory protein N288_03685 PF09278 MerR, DNA binding N288_03690 PF13193 AMP-binding enzyme C-terminal domain N288_03690 PF00501 AMP-binding enzyme N288_03695 PF13193 AMP-binding enzyme C-terminal domain N288_03695 PF00501 AMP-binding enzyme N288_03700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_03700 PF18158 Adaptive response protein AidB N-terminal domain N288_03700 PF02770 Acyl-CoA dehydrogenase, middle domain N288_03710 PF01494 FAD binding domain N288_03715 PF13649 Methyltransferase domain N288_03720 PF03707 Bacterial signalling protein N terminal repeat N288_03720 PF00563 EAL domain N288_03720 PF00990 Diguanylate cyclase, GGDEF domain N288_03725 PF07702 UTRA domain N288_03725 PF00392 Bacterial regulatory proteins, gntR family N288_03730 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) N288_03735 PF01965 DJ-1/PfpI family N288_03745 PF00557 Metallopeptidase family M24 N288_03750 PF01209 ubiE/COQ5 methyltransferase family N288_03760 PF06569 Protein of unknown function (DUF1128) N288_03765 PF01451 Low molecular weight phosphotyrosine protein phosphatase N288_03775 PF03631 Virulence factor BrkB N288_03795 PF07690 Major Facilitator Superfamily N288_03805 PF16242 Pyridoxamine 5'-phosphate oxidase like N288_03810 PF01699 Sodium/calcium exchanger protein N288_03820 PF14167 YfkD-like protein N288_03825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_03850 PF08240 Alcohol dehydrogenase GroES-like domain N288_03850 PF00107 Zinc-binding dehydrogenase N288_03880 PF08756 YfkB-like domain N288_03880 PF04055 Radical SAM superfamily N288_03895 PF04239 Protein of unknown function (DUF421) N288_03905 PF05681 Fumarate hydratase (Fumerase) N288_03905 PF05683 Fumarase C-terminus N288_03910 PF01522 Polysaccharide deacetylase N288_03915 PF00730 HhH-GPD superfamily base excision DNA repair protein N288_03920 PF01938 TRAM domain N288_03920 PF05958 tRNA (Uracil-5-)-methyltransferase N288_03950 PF00005 ABC transporter N288_03955 PF02653 Branched-chain amino acid transport system / permease component N288_03965 PF12631 MnmE helical domain N288_03965 PF10396 GTP-binding protein TrmE N-terminus N288_03965 PF01926 50S ribosome-binding GTPase N288_03985 PF12848 ABC transporter N288_03985 PF00005 ABC transporter N288_04045 PF00145 C-5 cytosine-specific DNA methylase N288_04110 PF00772 DnaB-like helicase N terminal domain N288_04110 PF03796 DnaB-like helicase C terminal domain N288_04140 PF00486 Transcriptional regulatory protein, C terminal N288_04140 PF00072 Response regulator receiver domain N288_04145 PF00005 ABC transporter N288_04155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_04155 PF00512 His Kinase A (phospho-acceptor) domain N288_04215 PF01022 Bacterial regulatory protein, arsR family N288_04220 PF02040 Arsenical pump membrane protein N288_04225 PF01451 Low molecular weight phosphotyrosine protein phosphatase N288_04230 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_04250 PF13188 PAS domain N288_04250 PF13426 PAS domain N288_04250 PF00989 PAS fold N288_04250 PF00512 His Kinase A (phospho-acceptor) domain N288_04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_04275 PF05684 Protein of unknown function (DUF819) N288_04285 PF00171 Aldehyde dehydrogenase family N288_04300 PF01965 DJ-1/PfpI family N288_04305 PF00326 Prolyl oligopeptidase family N288_04305 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain N288_04325 PF05048 Periplasmic copper-binding protein (NosD) N288_04325 PF18835 Beta helix repeat of Inulin fructotransferase N288_04340 PF01032 FecCD transport family N288_04345 PF01032 FecCD transport family N288_04350 PF00005 ABC transporter N288_04355 PF01497 Periplasmic binding protein N288_04365 PF03992 Antibiotic biosynthesis monooxygenase N288_04370 PF00990 Diguanylate cyclase, GGDEF domain N288_04370 PF13185 GAF domain N288_04380 PF04542 Sigma-70 region 2 N288_04380 PF12680 SnoaL-like domain N288_04380 PF08281 Sigma-70, region 4 N288_04385 PF01593 Flavin containing amine oxidoreductase N288_04410 PF00271 Helicase conserved C-terminal domain N288_04410 PF00270 DEAD/DEAH box helicase N288_04410 PF09382 RQC domain N288_04410 PF16124 RecQ zinc-binding N288_04410 PF00570 HRDC domain N288_04425 PF00293 NUDIX domain N288_04450 PF13556 PucR C-terminal helix-turn-helix domain N288_04450 PF17853 GGDEF-like domain N288_04455 PF01979 Amidohydrolase family N288_04460 PF00474 Sodium:solute symporter family N288_04465 PF01321 Creatinase/Prolidase N-terminal domain N288_04465 PF00557 Metallopeptidase family M24 N288_04475 PF05901 Excalibur calcium-binding domain N288_04480 PF00990 Diguanylate cyclase, GGDEF domain N288_04485 PF03576 Peptidase family S58 N288_04500 PF00152 tRNA synthetases class II (D, K and N) N288_04500 PF01336 OB-fold nucleic acid binding domain N288_04520 PF00990 Diguanylate cyclase, GGDEF domain N288_04530 PF12833 Helix-turn-helix domain N288_04535 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_04535 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_04565 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment N288_04570 PF03741 Integral membrane protein TerC family N288_04625 PF01872 RibD C-terminal domain N288_04650 PF00248 Aldo/keto reductase family N288_04660 PF00106 short chain dehydrogenase N288_04670 PF02073 Thermophilic metalloprotease (M29) N288_04695 PF04542 Sigma-70 region 2 N288_04695 PF08281 Sigma-70, region 4 N288_04700 PF07454 Stage II sporulation protein P (SpoIIP) N288_04710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_04710 PF00672 HAMP domain N288_04710 PF02743 Cache domain N288_04715 PF12822 ECF transporter, substrate-specific component N288_04730 PF01645 Conserved region in glutamate synthase N288_04735 PF07475 HPr Serine kinase C-terminal domain N288_04735 PF02603 HPr Serine kinase N terminus N288_04800 PF00313 'Cold-shock' DNA-binding domain N288_04805 PF00487 Fatty acid desaturase N288_04830 PF12697 Alpha/beta hydrolase family N288_04835 PF10903 Protein of unknown function (DUF2691) N288_04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_04850 PF00512 His Kinase A (phospho-acceptor) domain N288_04850 PF13426 PAS domain N288_04850 PF00672 HAMP domain N288_04855 PF00486 Transcriptional regulatory protein, C terminal N288_04855 PF00072 Response regulator receiver domain N288_04870 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain N288_04870 PF04616 Glycosyl hydrolases family 43 N288_04875 PF00480 ROK family N288_04885 PF00528 Binding-protein-dependent transport system inner membrane component N288_04890 PF00528 Binding-protein-dependent transport system inner membrane component N288_04895 PF04854 Protein of unknown function, DUF624 N288_04900 PF01261 Xylose isomerase-like TIM barrel N288_04905 PF00370 FGGY family of carbohydrate kinases, N-terminal domain N288_04905 PF02782 FGGY family of carbohydrate kinases, C-terminal domain N288_04910 PF00248 Aldo/keto reductase family N288_04915 PF00083 Sugar (and other) transporter N288_04920 PF01925 Sulfite exporter TauE/SafE N288_04925 PF17203 Single cache domain 3 N288_04925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_04925 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain N288_04925 PF00989 PAS fold N288_04930 PF00072 Response regulator receiver domain N288_04935 PF03390 2-hydroxycarboxylate transporter family N288_04940 PF03949 Malic enzyme, NAD binding domain N288_04940 PF00390 Malic enzyme, N-terminal domain N288_04945 PF01636 Phosphotransferase enzyme family N288_04960 PF00990 Diguanylate cyclase, GGDEF domain N288_04995 PF00005 ABC transporter N288_05000 PF00528 Binding-protein-dependent transport system inner membrane component N288_05005 PF00497 Bacterial extracellular solute-binding proteins, family 3 N288_05015 PF01636 Phosphotransferase enzyme family N288_05030 PF00005 ABC transporter N288_05030 PF16326 ABC transporter C-terminal domain N288_05030 PF12848 ABC transporter N288_05035 PF07308 Protein of unknown function (DUF1456) N288_05050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N288_05050 PF00378 Enoyl-CoA hydratase/isomerase N288_05050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N288_05060 PF02696 Uncharacterized ACR, YdiU/UPF0061 family N288_05065 PF00135 Carboxylesterase family N288_05070 PF13556 PucR C-terminal helix-turn-helix domain N288_05070 PF17853 GGDEF-like domain N288_05070 PF05651 Putative sugar diacid recognition N288_05075 PF02447 GntP family permease N288_05080 PF02595 Glycerate kinase family N288_05085 PF13581 Histidine kinase-like ATPase domain N288_05110 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain N288_05115 PF14310 Fibronectin type III-like domain N288_05115 PF01915 Glycosyl hydrolase family 3 C-terminal domain N288_05115 PF00933 Glycosyl hydrolase family 3 N terminal domain N288_05120 PF01547 Bacterial extracellular solute-binding protein N288_05125 PF00528 Binding-protein-dependent transport system inner membrane component N288_05130 PF00528 Binding-protein-dependent transport system inner membrane component N288_05140 PF00356 Bacterial regulatory proteins, lacI family N288_05145 PF03553 Na+/H+ antiporter family N288_05150 PF07885 Ion channel N288_05160 PF01380 SIS domain N288_05160 PF01418 Helix-turn-helix domain, rpiR family N288_05165 PF00232 Glycosyl hydrolase family 1 N288_05170 PF00892 EamA-like transporter family N288_05175 PF00348 Polyprenyl synthetase N288_05185 PF03741 Integral membrane protein TerC family N288_05190 PF00106 short chain dehydrogenase N288_05200 PF07687 Peptidase dimerisation domain N288_05200 PF01546 Peptidase family M20/M25/M40 N288_05205 PF07687 Peptidase dimerisation domain N288_05205 PF01546 Peptidase family M20/M25/M40 N288_05210 PF00583 Acetyltransferase (GNAT) family N288_05210 PF13673 Acetyltransferase (GNAT) domain N288_05215 PF13409 Glutathione S-transferase, N-terminal domain N288_05235 PF01593 Flavin containing amine oxidoreductase N288_05245 PF12833 Helix-turn-helix domain N288_05260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N288_05260 PF00384 Molybdopterin oxidoreductase N288_05260 PF01568 Molydopterin dinucleotide binding domain N288_05265 PF02525 Flavodoxin-like fold N288_05270 PF01047 MarR family N288_05275 PF00563 EAL domain N288_05275 PF00990 Diguanylate cyclase, GGDEF domain N288_05275 PF03707 Bacterial signalling protein N terminal repeat N288_05305 PF07729 FCD domain N288_05305 PF00392 Bacterial regulatory proteins, gntR family N288_05310 PF02652 L-lactate permease N288_05315 PF02754 Cysteine-rich domain N288_05320 PF11870 Domain of unknown function (DUF3390) N288_05320 PF13183 4Fe-4S dicluster domain N288_05320 PF02589 LUD domain N288_05325 PF02589 LUD domain N288_05345 PF12146 Serine aminopeptidase, S33 N288_05350 PF00367 phosphotransferase system, EIIB N288_05350 PF02378 Phosphotransferase system, EIIC N288_05350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N288_05375 PF03358 NADPH-dependent FMN reductase N288_05385 PF00497 Bacterial extracellular solute-binding proteins, family 3 N288_05390 PF00528 Binding-protein-dependent transport system inner membrane component N288_05395 PF00005 ABC transporter N288_05420 PF03553 Na+/H+ antiporter family N288_05425 PF08327 Activator of Hsp90 ATPase homolog 1-like protein N288_05465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_05480 PF03741 Integral membrane protein TerC family N288_05485 PF07690 Major Facilitator Superfamily N288_05490 PF12706 Beta-lactamase superfamily domain N288_05495 PF01037 Lrp/AsnC ligand binding domain N288_05500 PF00873 AcrB/AcrD/AcrF family N288_05505 PF00149 Calcineurin-like phosphoesterase N288_05510 PF04309 Glycerol-3-phosphate responsive antiterminator N288_05515 PF13416 Bacterial extracellular solute-binding protein N288_05525 PF00005 ABC transporter N288_05530 PF00528 Binding-protein-dependent transport system inner membrane component N288_05535 PF00528 Binding-protein-dependent transport system inner membrane component N288_05540 PF03009 Glycerophosphoryl diester phosphodiesterase family N288_05545 PF00535 Glycosyl transferase family 2 N288_05555 PF09586 Bacterial membrane protein YfhO N288_05565 PF00269 Small, acid-soluble spore proteins, alpha/beta type N288_05570 PF01323 DSBA-like thioredoxin domain N288_05575 PF07687 Peptidase dimerisation domain N288_05575 PF01546 Peptidase family M20/M25/M40 N288_05590 PF03551 Transcriptional regulator PadR-like family N288_05610 PF08338 Domain of unknown function (DUF1731) N288_05610 PF01370 NAD dependent epimerase/dehydratase family N288_05615 PF02631 RecX family N288_05635 PF08176 Small acid-soluble spore protein K family N288_05640 PF14043 WVELL protein N288_05645 PF04307 LexA-binding, inner membrane-associated putative hydrolase N288_05655 PF14815 NUDIX domain N288_05655 PF00730 HhH-GPD superfamily base excision DNA repair protein N288_05675 PF14182 YgaB-like protein N288_05680 PF04167 Protein of unknown function (DUF402) N288_05685 PF00005 ABC transporter N288_05685 PF00664 ABC transporter transmembrane region N288_05695 PF00005 ABC transporter N288_05695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_05700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_05700 PF00005 ABC transporter N288_05705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_05720 PF06081 Aromatic acid exporter family member 1 N288_05725 PF00310 Glutamine amidotransferases class-II N288_05725 PF01645 Conserved region in glutamate synthase N288_05725 PF01493 GXGXG motif N288_05725 PF04898 Glutamate synthase central domain N288_05730 PF00202 Aminotransferase class-III N288_05735 PF00005 ABC transporter N288_05755 PF07885 Ion channel N288_05760 PF00578 AhpC/TSA family N288_05770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N288_05770 PF01842 ACT domain N288_05770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N288_05775 PF01923 Cobalamin adenosyltransferase N288_05780 PF01475 Ferric uptake regulator family N288_05785 PF11023 Zinc-ribbon containing domain N288_05795 PF18576 Helix-turn-helix domain N288_05795 PF14540 Nucleotidyltransferase-like N288_05895 PF00528 Binding-protein-dependent transport system inner membrane component N288_05900 PF00528 Binding-protein-dependent transport system inner membrane component N288_05905 PF01547 Bacterial extracellular solute-binding protein N288_05910 PF02743 Cache domain N288_05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_05910 PF00672 HAMP domain N288_05910 PF06580 Histidine kinase N288_05915 PF12833 Helix-turn-helix domain N288_05915 PF00072 Response regulator receiver domain N288_05925 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N288_05925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_05930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_05930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N288_05940 PF08331 Domain of unknown function (DUF1730) N288_05945 PF12671 Putative amidase domain N288_05950 PF00588 SpoU rRNA Methylase family N288_05955 PF00881 Nitroreductase family N288_05965 PF08298 PrkA AAA domain N288_05965 PF06798 PrkA serine protein kinase C-terminal domain N288_05980 PF04285 Protein of unknown function (DUF444) N288_05995 PF02342 TerD domain N288_06005 PF00248 Aldo/keto reductase family N288_06015 PF07556 Protein of unknown function (DUF1538) N288_06020 PF07556 Protein of unknown function (DUF1538) N288_06030 PF02245 Methylpurine-DNA glycosylase (MPG) N288_06035 PF03807 NADP oxidoreductase coenzyme F420-dependent N288_06035 PF14748 Pyrroline-5-carboxylate reductase dimerisation N288_06045 PF00512 His Kinase A (phospho-acceptor) domain N288_06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_06050 PF00990 Diguanylate cyclase, GGDEF domain N288_06050 PF00072 Response regulator receiver domain N288_06060 PF00535 Glycosyl transferase family 2 N288_06070 PF00486 Transcriptional regulatory protein, C terminal N288_06070 PF00072 Response regulator receiver domain N288_06075 PF00989 PAS fold N288_06075 PF18698 Histidine kinase sensor domain N288_06075 PF00512 His Kinase A (phospho-acceptor) domain N288_06075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_06075 PF00672 HAMP domain N288_06080 PF00375 Sodium:dicarboxylate symporter family N288_06085 PF13649 Methyltransferase domain N288_06090 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_06090 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_06100 PF00860 Permease family N288_06105 PF01546 Peptidase family M20/M25/M40 N288_06115 PF00486 Transcriptional regulatory protein, C terminal N288_06115 PF00072 Response regulator receiver domain N288_06120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_06120 PF00512 His Kinase A (phospho-acceptor) domain N288_06120 PF00672 HAMP domain N288_06135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N288_06135 PF00356 Bacterial regulatory proteins, lacI family N288_06145 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain N288_06145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N288_06150 PF01380 SIS domain N288_06150 PF01418 Helix-turn-helix domain, rpiR family N288_06155 PF02447 GntP family permease N288_06165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain N288_06165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain N288_06170 PF01384 Phosphate transporter family N288_06175 PF01865 Protein of unknown function DUF47 N288_06180 PF13538 UvrD-like helicase C-terminal domain N288_06190 PF04226 Transglycosylase associated protein N288_06195 PF01479 S4 domain N288_06195 PF00849 RNA pseudouridylate synthase N288_06205 PF00085 Thioredoxin N288_06210 PF02600 Disulfide bond formation protein DsbB N288_06220 PF00795 Carbon-nitrogen hydrolase N288_06220 PF00583 Acetyltransferase (GNAT) family N288_06225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N288_06225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N288_06225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N288_06225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N288_06230 PF07730 Histidine kinase N288_06230 PF13185 GAF domain N288_06235 PF00196 Bacterial regulatory proteins, luxR family N288_06235 PF00072 Response regulator receiver domain N288_06240 PF03358 NADPH-dependent FMN reductase N288_06250 PF14148 YhdB-like protein N288_06260 PF04293 SpoVR like protein N288_06300 PF01022 Bacterial regulatory protein, arsR family N288_06315 PF00085 Thioredoxin N288_06315 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_06335 PF00440 Bacterial regulatory proteins, tetR family N288_06340 PF00873 AcrB/AcrD/AcrF family N288_06350 PF03551 Transcriptional regulator PadR-like family N288_06355 PF10925 Protein of unknown function (DUF2680) N288_06385 PF14501 GHKL domain N288_06390 PF04397 LytTr DNA-binding domain N288_06390 PF00072 Response regulator receiver domain N288_06395 PF00005 ABC transporter N288_06400 PF12679 ABC-2 family transporter protein N288_06405 PF07690 Major Facilitator Superfamily N288_06410 PF00801 PKD domain N288_06410 PF05547 Immune inhibitor A peptidase M6 N288_06415 PF03631 Virulence factor BrkB N288_06420 PF06103 Bacterial protein of unknown function (DUF948) N288_06425 PF00860 Permease family N288_06430 PF00881 Nitroreductase family N288_06450 PF00072 Response regulator receiver domain N288_06450 PF00486 Transcriptional regulatory protein, C terminal N288_06455 PF00672 HAMP domain N288_06455 PF00512 His Kinase A (phospho-acceptor) domain N288_06455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_06465 PF01595 Cyclin M transmembrane N-terminal domain N288_06465 PF03471 Transporter associated domain N288_06465 PF00571 CBS domain N288_06485 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain N288_06485 PF01740 STAS domain N288_06490 PF13302 Acetyltransferase (GNAT) domain N288_06495 PF00989 PAS fold N288_06495 PF00512 His Kinase A (phospho-acceptor) domain N288_06495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_06505 PF00582 Universal stress protein family N288_06510 PF00912 Transglycosylase N288_06510 PF00905 Penicillin binding protein transpeptidase domain N288_06520 PF01979 Amidohydrolase family N288_06525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N288_06525 PF02378 Phosphotransferase system, EIIC N288_06525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N288_06530 PF08279 HTH domain N288_06530 PF05043 Mga helix-turn-helix domain N288_06530 PF00874 PRD domain N288_06530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N288_06530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N288_06535 PF01232 Mannitol dehydrogenase Rossmann domain N288_06535 PF08125 Mannitol dehydrogenase C-terminal domain N288_06540 PF07690 Major Facilitator Superfamily N288_06545 PF07883 Cupin domain N288_06555 PF13419 Haloacid dehalogenase-like hydrolase N288_06560 PF13302 Acetyltransferase (GNAT) domain N288_06570 PF04542 Sigma-70 region 2 N288_06570 PF08281 Sigma-70, region 4 N288_06590 PF01906 Putative heavy-metal-binding N288_06595 PF00664 ABC transporter transmembrane region N288_06595 PF00005 ABC transporter N288_06600 PF00664 ABC transporter transmembrane region N288_06600 PF00005 ABC transporter N288_06610 PF00206 Lyase N288_06610 PF10415 Fumarase C C-terminus N288_06615 PF00269 Small, acid-soluble spore proteins, alpha/beta type N288_06625 PF00005 ABC transporter N288_06625 PF03459 TOBE domain N288_06625 PF17912 MalK OB fold domain N288_06630 PF13556 PucR C-terminal helix-turn-helix domain N288_06635 PF02583 Metal-sensitive transcriptional repressor N288_06650 PF14398 YheC/D like ATP-grasp N288_06655 PF14398 YheC/D like ATP-grasp N288_06660 PF14398 YheC/D like ATP-grasp N288_06665 PF14398 YheC/D like ATP-grasp N288_06670 PF04286 Protein of unknown function (DUF445) N288_06675 PF06133 Control of competence regulator ComK, YlbF/YmcA N288_06690 PF00269 Small, acid-soluble spore proteins, alpha/beta type N288_06695 PF08338 Domain of unknown function (DUF1731) N288_06695 PF01370 NAD dependent epimerase/dehydratase family N288_06705 PF04055 Radical SAM superfamily N288_06715 PF00501 AMP-binding enzyme N288_06715 PF13193 AMP-binding enzyme C-terminal domain N288_06720 PF00378 Enoyl-CoA hydratase/isomerase N288_06730 PF00005 ABC transporter N288_06730 PF13732 Domain of unknown function (DUF4162) N288_06740 PF01810 LysE type translocator N288_06750 PF13667 ThiC-associated domain N288_06750 PF01964 Radical SAM ThiC family N288_06765 PF00149 Calcineurin-like phosphoesterase N288_06770 PF13514 AAA domain N288_06780 PF01966 HD domain N288_06795 PF05698 Bacterial trigger factor protein (TF) C-terminus N288_06800 PF09680 Family of unknown function N288_06830 PF01047 MarR family N288_06845 PF17099 Tryptophan transporter TrpP N288_06850 PF00266 Aminotransferase class-V N288_06855 PF01230 HIT domain N288_06865 PF00005 ABC transporter N288_06870 PF05975 Bacterial ABC transporter protein EcsB N288_06875 PF12787 EcsC protein family N288_06880 PF01546 Peptidase family M20/M25/M40 N288_06880 PF07687 Peptidase dimerisation domain N288_06885 PF01569 PAP2 superfamily N288_06890 PF01212 Beta-eliminating lyase N288_06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_06910 PF00512 His Kinase A (phospho-acceptor) domain N288_06910 PF00989 PAS fold N288_06910 PF08447 PAS fold N288_06920 PF13396 Phospholipase_D-nuclease N-terminal N288_06920 PF13091 PLD-like domain N288_06925 PF04294 VanW like protein N288_06930 PF11724 YvbH-like oligomerisation region N288_06930 PF08000 Bacterial PH domain N288_06935 PF10138 vWA found in TerF C terminus N288_06940 PF04748 Divergent polysaccharide deacetylase N288_06955 PF09962 Uncharacterized conserved protein (DUF2196) N288_06975 PF07730 Histidine kinase N288_06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_06975 PF00672 HAMP domain N288_06980 PF00196 Bacterial regulatory proteins, luxR family N288_06980 PF00072 Response regulator receiver domain N288_06990 PF03992 Antibiotic biosynthesis monooxygenase N288_07000 PF01208 Uroporphyrinogen decarboxylase (URO-D) N288_07010 PF17932 Tetracyclin repressor-like, C-terminal domain N288_07010 PF00440 Bacterial regulatory proteins, tetR family N288_07025 PF12706 Beta-lactamase superfamily domain N288_07030 PF10437 Bacterial lipoate protein ligase C-terminus N288_07030 PF03099 Biotin/lipoate A/B protein ligase family N288_07035 PF13193 AMP-binding enzyme C-terminal domain N288_07035 PF00501 AMP-binding enzyme N288_07045 PF00378 Enoyl-CoA hydratase/isomerase N288_07055 PF02653 Branched-chain amino acid transport system / permease component N288_07060 PF09383 NIL domain N288_07060 PF00005 ABC transporter N288_07065 PF07883 Cupin domain N288_07065 PF01381 Helix-turn-helix N288_07070 PF03591 AzlC protein N288_07080 PF01435 Peptidase family M48 N288_07080 PF16491 CAAX prenyl protease N-terminal, five membrane helices N288_07095 PF06338 ComK protein N288_07105 PF07676 WD40-like Beta Propeller Repeat N288_07105 PF00326 Prolyl oligopeptidase family N288_07110 PF03816 Cell envelope-related transcriptional attenuator domain N288_07115 PF09335 SNARE associated Golgi protein N288_07120 PF10502 Signal peptidase, peptidase S26 N288_07145 PF12399 Branched-chain amino acid ATP-binding cassette transporter N288_07145 PF00005 ABC transporter N288_07150 PF00005 ABC transporter N288_07155 PF02653 Branched-chain amino acid transport system / permease component N288_07170 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N288_07170 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N288_07185 PF00108 Thiolase, N-terminal domain N288_07185 PF02803 Thiolase, C-terminal domain N288_07190 PF00857 Isochorismatase family N288_07195 PF00501 AMP-binding enzyme N288_07195 PF13193 AMP-binding enzyme C-terminal domain N288_07200 PF01636 Phosphotransferase enzyme family N288_07205 PF07690 Major Facilitator Superfamily N288_07210 PF12705 PD-(D/E)XK nuclease superfamily N288_07215 PF13361 UvrD-like helicase C-terminal domain N288_07215 PF12705 PD-(D/E)XK nuclease superfamily N288_07215 PF00580 UvrD/REP helicase N-terminal domain N288_07225 PF10676 Spore germination protein gerPA/gerPF N288_07240 PF10737 Spore germination protein GerPC N288_07245 PF10803 Spore germination GerPB N288_07250 PF10676 Spore germination protein gerPA/gerPF N288_07255 PF13193 AMP-binding enzyme C-terminal domain N288_07255 PF00501 AMP-binding enzyme N288_07265 PF04235 Protein of unknown function (DUF418) N288_07275 PF01557 Fumarylacetoacetate (FAA) hydrolase family N288_07280 PF07457 Protein of unknown function (DUF1516) N288_07285 PF00990 Diguanylate cyclase, GGDEF domain N288_07285 PF00563 EAL domain N288_07285 PF03707 Bacterial signalling protein N terminal repeat N288_07295 PF07730 Histidine kinase N288_07300 PF00196 Bacterial regulatory proteins, luxR family N288_07300 PF00072 Response regulator receiver domain N288_07305 PF00005 ABC transporter N288_07325 PF00733 Asparagine synthase N288_07325 PF13537 Glutamine amidotransferase domain N288_07335 PF01593 Flavin containing amine oxidoreductase N288_07350 PF01554 MatE N288_07355 PF16657 Maltogenic Amylase, C-terminal domain N288_07355 PF02903 Alpha amylase, N-terminal ig-like domain N288_07355 PF00128 Alpha amylase, catalytic domain N288_07365 PF13416 Bacterial extracellular solute-binding protein N288_07370 PF00528 Binding-protein-dependent transport system inner membrane component N288_07375 PF00528 Binding-protein-dependent transport system inner membrane component N288_07380 PF03423 Carbohydrate binding domain (family 25) N288_07380 PF00128 Alpha amylase, catalytic domain N288_07380 PF01373 Glycosyl hydrolase family 14 N288_07385 PF01055 Glycosyl hydrolases family 31 N288_07385 PF13802 Galactose mutarotase-like N288_07385 PF17137 Domain of unknown function (DUF5110) N288_07385 PF16338 Domain of unknown function (DUF4968) N288_07390 PF00356 Bacterial regulatory proteins, lacI family N288_07390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N288_07405 PF04461 Protein of unknown function (DUF520) N288_07410 PF17783 CvfB-like winged helix domain N288_07410 PF13509 S1 domain N288_07420 PF02645 Uncharacterised protein, DegV family COG1307 N288_07425 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_07425 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_07435 PF12758 Protein of unknown function (DUF3813) N288_07450 PF00326 Prolyl oligopeptidase family N288_07455 PF01883 Iron-sulfur cluster assembly protein N288_07465 PF00994 Probable molybdopterin binding domain N288_07465 PF03454 MoeA C-terminal region (domain IV) N288_07465 PF03453 MoeA N-terminal region (domain I and II) N288_07475 PF02774 Semialdehyde dehydrogenase, dimerisation domain N288_07475 PF01118 Semialdehyde dehydrogenase, NAD binding domain N288_07480 PF01960 ArgJ family N288_07485 PF00696 Amino acid kinase family N288_07490 PF00202 Aminotransferase class-III N288_07495 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain N288_07495 PF00117 Glutamine amidotransferase class-I N288_07500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N288_07500 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N288_07505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N288_07505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N288_07510 PF02673 Bacitracin resistance protein BacA N288_07515 PF14168 YjzC-like protein N288_07520 PF02861 Clp amino terminal domain, pathogenicity island component N288_07520 PF07724 AAA domain (Cdc48 subfamily) N288_07520 PF17871 AAA lid domain N288_07520 PF10431 C-terminal, D2-small domain, of ClpB protein N288_07520 PF00004 ATPase family associated with various cellular activities (AAA) N288_07545 PF02608 ABC transporter substrate-binding protein PnrA-like N288_07550 PF10815 ComZ N288_07560 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N288_07560 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N288_07565 PF00109 Beta-ketoacyl synthase, N-terminal domain N288_07565 PF02801 Beta-ketoacyl synthase, C-terminal domain N288_07570 PF10026 Predicted Zn-dependent protease (DUF2268) N288_07575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_07575 PF00005 ABC transporter N288_07580 PF00005 ABC transporter N288_07580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_07585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_07590 PF00528 Binding-protein-dependent transport system inner membrane component N288_07595 PF00528 Binding-protein-dependent transport system inner membrane component N288_07595 PF12911 N-terminal TM domain of oligopeptide transport permease C N288_07605 PF12227 Protein of unknown function (DUF3603) N288_07610 PF00579 tRNA synthetases class I (W and Y) N288_07615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_07620 PF00528 Binding-protein-dependent transport system inner membrane component N288_07625 PF12911 N-terminal TM domain of oligopeptide transport permease C N288_07625 PF00528 Binding-protein-dependent transport system inner membrane component N288_07630 PF00005 ABC transporter N288_07630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_07635 PF00005 ABC transporter N288_07635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_07650 PF13508 Acetyltransferase (GNAT) domain N288_07655 PF03960 ArsC family N288_07660 PF05389 Negative regulator of genetic competence (MecA) N288_07665 PF13396 Phospholipase_D-nuclease N-terminal N288_07665 PF13091 PLD-like domain N288_07680 PF01432 Peptidase family M3 N288_07680 PF08439 Oligopeptidase F N288_07695 PF01152 Bacterial-like globin N288_07705 PF01464 Transglycosylase SLT domain N288_07710 PF01928 CYTH domain N288_07720 PF04607 Region found in RelA / SpoT proteins N288_07725 PF01513 ATP-NAD kinase N288_07730 PF00849 RNA pseudouridylate synthase N288_07735 PF00149 Calcineurin-like phosphoesterase N288_07740 PF00571 CBS domain N288_07740 PF01769 Divalent cation transporter N288_07740 PF03448 MgtE intracellular N domain N288_07745 PF02254 TrkA-N domain N288_07745 PF02080 TrkA-C domain N288_07745 PF00999 Sodium/hydrogen exchanger family N288_07765 PF07098 Protein of unknown function (DUF1360) N288_07780 PF03862 SpoVAC/SpoVAEB sporulation membrane protein N288_07785 PF07451 Stage V sporulation protein AD (SpoVAD) N288_07790 PF03862 SpoVAC/SpoVAEB sporulation membrane protein N288_07795 PF04239 Protein of unknown function (DUF421) N288_07805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_07805 PF02770 Acyl-CoA dehydrogenase, middle domain N288_07805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_07815 PF00501 AMP-binding enzyme N288_07815 PF13193 AMP-binding enzyme C-terminal domain N288_07820 PF00440 Bacterial regulatory proteins, tetR family N288_07825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N288_07825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N288_07830 PF00378 Enoyl-CoA hydratase/isomerase N288_07845 PF04029 2-phosphosulpholactate phosphatase N288_07850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_07850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_07850 PF02770 Acyl-CoA dehydrogenase, middle domain N288_07855 PF00378 Enoyl-CoA hydratase/isomerase N288_07860 PF00107 Zinc-binding dehydrogenase N288_07860 PF08240 Alcohol dehydrogenase GroES-like domain N288_07865 PF14069 Stage VI sporulation protein F N288_07870 PF00580 UvrD/REP helicase N-terminal domain N288_07870 PF13361 UvrD-like helicase C-terminal domain N288_07880 PF04239 Protein of unknown function (DUF421) N288_07885 PF13673 Acetyltransferase (GNAT) domain N288_07895 PF00756 Putative esterase N288_07900 PF16868 NMT1-like family N288_07920 PF08402 TOBE domain N288_07920 PF00005 ABC transporter N288_07935 PF00296 Luciferase-like monooxygenase N288_07950 PF04951 D-aminopeptidase N288_07955 PF00528 Binding-protein-dependent transport system inner membrane component N288_07960 PF12911 N-terminal TM domain of oligopeptide transport permease C N288_07960 PF00528 Binding-protein-dependent transport system inner membrane component N288_07965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_07965 PF00005 ABC transporter N288_07970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_07975 PF17676 LD-carboxypeptidase C-terminal domain N288_07975 PF02016 LD-carboxypeptidase N-terminal domain N288_07980 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N288_07980 PF13378 Enolase C-terminal domain-like N288_07985 PF00877 NlpC/P60 family N288_07990 PF00005 ABC transporter N288_07990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_08005 PF03707 Bacterial signalling protein N terminal repeat N288_08005 PF00990 Diguanylate cyclase, GGDEF domain N288_08005 PF00563 EAL domain N288_08010 PF13419 Haloacid dehalogenase-like hydrolase N288_08015 PF16242 Pyridoxamine 5'-phosphate oxidase like N288_08045 PF03323 Bacillus/Clostridium GerA spore germination protein N288_08090 PF03009 Glycerophosphoryl diester phosphodiesterase family N288_08110 PF01145 SPFH domain / Band 7 family N288_08110 PF15975 Flotillin N288_08135 PF08448 PAS fold N288_08135 PF01739 CheR methyltransferase, SAM binding domain N288_08135 PF01339 CheB methylesterase N288_08135 PF03705 CheR methyltransferase, all-alpha domain N288_08155 PF05922 Peptidase inhibitor I9 N288_08155 PF00082 Subtilase family N288_08160 PF08281 Sigma-70, region 4 N288_08160 PF04542 Sigma-70 region 2 N288_08170 PF13416 Bacterial extracellular solute-binding protein N288_08175 PF00528 Binding-protein-dependent transport system inner membrane component N288_08180 PF00528 Binding-protein-dependent transport system inner membrane component N288_08195 PF00005 ABC transporter N288_08200 PF00528 Binding-protein-dependent transport system inner membrane component N288_08205 PF01910 Thiamine-binding protein N288_08215 PF07486 Cell Wall Hydrolase N288_08225 PF02146 Sir2 family N288_08230 PF02378 Phosphotransferase system, EIIC N288_08230 PF00367 phosphotransferase system, EIIB N288_08235 PF00128 Alpha amylase, catalytic domain N288_08235 PF16657 Maltogenic Amylase, C-terminal domain N288_08240 PF00128 Alpha amylase, catalytic domain N288_08240 PF16657 Maltogenic Amylase, C-terminal domain N288_08245 PF01773 Na+ dependent nucleoside transporter N-terminus N288_08245 PF07662 Na+ dependent nucleoside transporter C-terminus N288_08250 PF04307 LexA-binding, inner membrane-associated putative hydrolase N288_08255 PF16658 Class II release factor RF3, C-terminal domain N288_08255 PF03144 Elongation factor Tu domain 2 N288_08255 PF00009 Elongation factor Tu GTP binding domain N288_08260 PF00563 EAL domain N288_08260 PF05231 MASE1 N288_08265 PF00583 Acetyltransferase (GNAT) family N288_08275 PF02463 RecF/RecN/SMC N terminal domain N288_08280 PF00873 AcrB/AcrD/AcrF family N288_08295 PF04542 Sigma-70 region 2 N288_08300 PF12791 Anti-sigma factor N-terminus N288_08305 PF00269 Small, acid-soluble spore proteins, alpha/beta type N288_08310 PF13183 4Fe-4S dicluster domain N288_08310 PF02754 Cysteine-rich domain N288_08315 PF02913 FAD linked oxidases, C-terminal domain N288_08315 PF01565 FAD binding domain N288_08320 PF13556 PucR C-terminal helix-turn-helix domain N288_08320 PF17853 GGDEF-like domain N288_08320 PF05651 Putative sugar diacid recognition N288_08325 PF02386 Cation transport protein N288_08350 PF01757 Acyltransferase family N288_08355 PF00672 HAMP domain N288_08355 PF12729 Four helix bundle sensory module for signal transduction N288_08355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_08365 PF00512 His Kinase A (phospho-acceptor) domain N288_08365 PF13426 PAS domain N288_08365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_08365 PF00989 PAS fold N288_08365 PF13188 PAS domain N288_08380 PF01636 Phosphotransferase enzyme family N288_08385 PF00795 Carbon-nitrogen hydrolase N288_08390 PF00155 Aminotransferase class I and II N288_08395 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain N288_08395 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain N288_08405 PF00596 Class II Aldolase and Adducin N-terminal domain N288_08410 PF03079 ARD/ARD' family N288_08415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_08425 PF02535 ZIP Zinc transporter N288_08430 PF07690 Major Facilitator Superfamily N288_08435 PF01636 Phosphotransferase enzyme family N288_08440 PF00512 His Kinase A (phospho-acceptor) domain N288_08440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_08440 PF02743 Cache domain N288_08445 PF00149 Calcineurin-like phosphoesterase N288_08445 PF02872 5'-nucleotidase, C-terminal domain N288_08450 PF01047 MarR family N288_08460 PF13188 PAS domain N288_08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_08460 PF13426 PAS domain N288_08460 PF00512 His Kinase A (phospho-acceptor) domain N288_08460 PF00989 PAS fold N288_08465 PF07724 AAA domain (Cdc48 subfamily) N288_08465 PF17871 AAA lid domain N288_08465 PF10431 C-terminal, D2-small domain, of ClpB protein N288_08465 PF00004 ATPase family associated with various cellular activities (AAA) N288_08485 PF13460 NAD(P)H-binding N288_08490 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) N288_08515 PF17863 AAA lid domain N288_08515 PF07726 ATPase family associated with various cellular activities (AAA) N288_08535 PF00381 PTS HPr component phosphorylation site N288_08540 PF05524 PEP-utilising enzyme, N-terminal N288_08540 PF00391 PEP-utilising enzyme, mobile domain N288_08540 PF02896 PEP-utilising enzyme, TIM barrel domain N288_08560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N288_08560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N288_08565 PF00155 Aminotransferase class I and II N288_08570 PF06271 RDD family N288_08580 PF17934 Tetracyclin repressor-like, C-terminal domain N288_08580 PF00440 Bacterial regulatory proteins, tetR family N288_08595 PF00072 Response regulator receiver domain N288_08595 PF01584 CheW-like domain N288_08600 PF14177 YkyB-like protein N288_08610 PF05977 Transmembrane secretion effector N288_08620 PF03734 L,D-transpeptidase catalytic domain N288_08620 PF01476 LysM domain N288_08625 PF00149 Calcineurin-like phosphoesterase N288_08625 PF10518 TAT (twin-arginine translocation) pathway signal sequence N288_08635 PF13529 Peptidase_C39 like family N288_08645 PF00563 EAL domain N288_08645 PF10388 EAL-domain associated signalling protein domain N288_08665 PF00753 Metallo-beta-lactamase superfamily N288_08670 PF08796 Protein of unknown function (DUF1797) N288_08685 PF01925 Sulfite exporter TauE/SafE N288_08690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N288_08690 PF03466 LysR substrate binding domain N288_08695 PF14602 Hexapeptide repeat of succinyl-transferase N288_08695 PF00132 Bacterial transferase hexapeptide (six repeats) N288_08695 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal N288_08700 PF07687 Peptidase dimerisation domain N288_08700 PF01546 Peptidase family M20/M25/M40 N288_08705 PF00924 Mechanosensitive ion channel N288_08710 PF00005 ABC transporter N288_08710 PF00664 ABC transporter transmembrane region N288_08715 PF00664 ABC transporter transmembrane region N288_08715 PF00005 ABC transporter N288_08730 PF01654 Cytochrome bd terminal oxidase subunit I N288_08735 PF02322 Cytochrome bd terminal oxidase subunit II N288_08740 PF02254 TrkA-N domain N288_08740 PF02080 TrkA-C domain N288_08745 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain N288_08745 PF00753 Metallo-beta-lactamase superfamily N288_08745 PF17770 Ribonuclease J C-terminal domain N288_08760 PF00892 EamA-like transporter family N288_08770 PF01327 Polypeptide deformylase N288_08785 PF00676 Dehydrogenase E1 component N288_08790 PF02780 Transketolase, C-terminal domain N288_08790 PF02779 Transketolase, pyrimidine binding domain N288_08795 PF00364 Biotin-requiring enzyme N288_08795 PF02817 e3 binding domain N288_08795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N288_08800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N288_08800 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_08815 PF02028 BCCT, betaine/carnitine/choline family transporter N288_08820 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain N288_08820 PF01522 Polysaccharide deacetylase N288_08840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain N288_08840 PF01276 Orn/Lys/Arg decarboxylase, major domain N288_08845 PF03060 Nitronate monooxygenase N288_08850 PF05256 Uncharacterised protein family (UPF0223) N288_08855 PF06335 Protein of unknown function (DUF1054) N288_08870 PF00459 Inositol monophosphatase family N288_08890 PF14036 YlaH-like protein N288_08905 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) N288_08915 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) N288_08920 PF13638 PIN domain N288_08920 PF02562 PhoH-like protein N288_08935 PF01098 Cell cycle protein N288_08940 PF02436 Conserved carboxylase domain N288_08940 PF00289 Biotin carboxylase, N-terminal domain N288_08940 PF02785 Biotin carboxylase C-terminal domain N288_08940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N288_08940 PF00682 HMGL-like N288_08940 PF00364 Biotin-requiring enzyme N288_08945 PF02628 Cytochrome oxidase assembly protein N288_08950 PF01040 UbiA prenyltransferase family N288_08955 PF00116 Cytochrome C oxidase subunit II, periplasmic domain N288_08955 PF02790 Cytochrome C oxidase subunit II, transmembrane domain N288_08955 PF00034 Cytochrome c N288_08960 PF00115 Cytochrome C and Quinol oxidase polypeptide I N288_08965 PF00510 Cytochrome c oxidase subunit III N288_08970 PF03626 Prokaryotic Cytochrome C oxidase subunit IV N288_08975 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) N288_08995 PF08868 YugN-like family N288_09000 PF00571 CBS domain N288_09005 PF14504 CAP-associated N-terminal N288_09005 PF00188 Cysteine-rich secretory protein family N288_09025 PF14003 YlbE-like protein N288_09035 PF06133 Control of competence regulator ComK, YlbF/YmcA N288_09040 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) N288_09060 PF01467 Cytidylyltransferase-like N288_09065 PF07670 Nucleoside recognition N288_09070 PF01734 Patatin-like phospholipase N288_09075 PF13180 PDZ domain N288_09075 PF05362 Lon protease (S16) C-terminal proteolytic domain N288_09080 PF05636 HIGH Nucleotidyl Transferase N288_09085 PF02620 Large ribosomal RNA subunit accumulation protein YceD N288_09090 PF01783 Ribosomal L32p protein family N288_09095 PF00378 Enoyl-CoA hydratase/isomerase N288_09105 PF13508 Acetyltransferase (GNAT) domain N288_09110 PF00289 Biotin carboxylase, N-terminal domain N288_09110 PF02785 Biotin carboxylase C-terminal domain N288_09110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N288_09115 PF00364 Biotin-requiring enzyme N288_09120 PF01039 Carboxyl transferase domain N288_09125 PF08546 Ketopantoate reductase PanE/ApbA C terminal N288_09125 PF02558 Ketopantoate reductase PanE/ApbA N288_09135 PF10079 Bacillithiol biosynthesis BshC N288_09145 PF02381 MraZ protein, putative antitoxin-like N288_09150 PF01795 MraW methylase family N288_09155 PF04977 Septum formation initiator N288_09165 PF03793 PASTA domain N288_09165 PF03717 Penicillin-binding Protein dimerisation domain N288_09165 PF00905 Penicillin binding protein transpeptidase domain N288_09175 PF08245 Mur ligase middle domain N288_09175 PF02875 Mur ligase family, glutamate ligase domain N288_09175 PF01225 Mur ligase family, catalytic domain N288_09185 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 N288_09185 PF00953 Glycosyl transferase family 4 N288_09190 PF02875 Mur ligase family, glutamate ligase domain N288_09190 PF08245 Mur ligase middle domain N288_09195 PF01098 Cell cycle protein N288_09205 PF04101 Glycosyltransferase family 28 C-terminal domain N288_09205 PF03033 Glycosyltransferase family 28 N-terminal domain N288_09210 PF01565 FAD binding domain N288_09210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N288_09215 PF08478 POTRA domain, FtsQ-type N288_09220 PF05949 Bacterial protein of unknown function (DUF881) N288_09225 PF05949 Bacterial protein of unknown function (DUF881) N288_09230 PF06947 Protein of unknown function (DUF1290) N288_09235 PF02491 SHS2 domain inserted in FTSA N288_09240 PF00091 Tubulin/FtsZ family, GTPase domain N288_09240 PF12327 FtsZ family, C-terminal domain N288_09245 PF03419 Sporulation factor SpoIIGA N288_09250 PF04545 Sigma-70, region 4 N288_09250 PF04542 Sigma-70 region 2 N288_09255 PF04542 Sigma-70 region 2 N288_09255 PF04545 Sigma-70, region 4 N288_09255 PF04539 Sigma-70 region 3 N288_09260 PF05239 PRC-barrel domain N288_09270 PF01168 Alanine racemase, N-terminal domain N288_09275 PF04472 Cell division protein SepF N288_09280 PF02325 YGGT family N288_09285 PF01479 S4 domain N288_09285 PF17774 Putative RNA-binding domain in YlmH N288_09290 PF05103 DivIVA protein N288_09295 PF00133 tRNA synthetases class I (I, L, M and V) N288_09295 PF08264 Anticodon-binding domain of tRNA N288_09295 PF06827 Zinc finger found in FPG and IleRS N288_09305 PF01252 Signal peptidase (SPase) II N288_09310 PF01479 S4 domain N288_09310 PF00849 RNA pseudouridylate synthase N288_09315 PF00156 Phosphoribosyl transferase domain N288_09320 PF00860 Permease family N288_09325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N288_09325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N288_09330 PF01979 Amidohydrolase family N288_09335 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain N288_09335 PF00117 Glutamine amidotransferase class-I N288_09340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N288_09340 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N288_09340 PF02142 MGS-like domain N288_09345 PF00175 Oxidoreductase NAD-binding domain N288_09345 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B N288_09350 PF01180 Dihydroorotate dehydrogenase N288_09355 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N288_09360 PF00156 Phosphoribosyl transferase domain N288_09375 PF00690 Cation transporter/ATPase, N-terminus N288_09375 PF00689 Cation transporting ATPase, C-terminus N288_09380 PF08340 Domain of unknown function (DUF1732) N288_09380 PF03755 YicC-like family, N-terminal region N288_09385 PF04025 Domain of unknown function (DUF370) N288_09390 PF00625 Guanylate kinase N288_09395 PF01192 RNA polymerase Rpb6 N288_09400 PF04127 DNA / pantothenate metabolism flavoprotein N288_09400 PF02441 Flavoprotein N288_09405 PF18319 PriA DNA helicase Cys-rich region (CRR) domain N288_09405 PF17764 3′ DNA-binding domain (3′BD) N288_09405 PF00271 Helicase conserved C-terminal domain N288_09405 PF04851 Type III restriction enzyme, res subunit N288_09405 PF18074 Primosomal protein N C-terminal domain N288_09410 PF01327 Polypeptide deformylase N288_09420 PF01029 NusB family N288_09420 PF01189 16S rRNA methyltransferase RsmB/F N288_09425 PF04055 Radical SAM superfamily N288_09435 PF00069 Protein kinase domain N288_09435 PF03793 PASTA domain N288_09440 PF16745 RsgA N-terminal domain N288_09440 PF03193 RsgA GTPase N288_09445 PF00834 Ribulose-phosphate 3 epimerase family N288_09450 PF04263 Thiamin pyrophosphokinase, catalytic domain N288_09450 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain N288_09455 PF08183 Stage V sporulation protein family N288_09460 PF00830 Ribosomal L28 family N288_09465 PF03780 Asp23 family, cell envelope-related function N288_09470 PF02734 DAK2 domain N288_09470 PF13684 Dihydroxyacetone kinase family N288_09475 PF00271 Helicase conserved C-terminal domain N288_09475 PF17191 RecG wedge domain N288_09475 PF00270 DEAD/DEAH box helicase N288_09480 PF01575 MaoC like domain N288_09480 PF08279 HTH domain N288_09485 PF02504 Fatty acid synthesis protein N288_09490 PF00698 Acyl transferase domain N288_09500 PF00550 Phosphopantetheine attachment site N288_09510 PF14622 Ribonuclease-III-like N288_09510 PF00035 Double-stranded RNA binding motif N288_09515 PF06470 SMC proteins Flexible Hinge Domain N288_09515 PF02463 RecF/RecN/SMC N terminal domain N288_09520 PF02881 SRP54-type protein, helical bundle domain N288_09520 PF00448 SRP54-type protein, GTPase domain N288_09530 PF00005 ABC transporter N288_09545 PF17863 AAA lid domain N288_09545 PF07726 ATPase family associated with various cellular activities (AAA) N288_09550 PF01882 Protein of unknown function DUF58 N288_09565 PF04297 Putative helix-turn-helix protein, YlxM / p13 like N288_09570 PF02978 Signal peptide binding domain N288_09570 PF02881 SRP54-type protein, helical bundle domain N288_09570 PF00448 SRP54-type protein, GTPase domain N288_09575 PF00886 Ribosomal protein S16 N288_09585 PF11068 YlqD protein N288_09590 PF01782 RimM N-terminal domain N288_09590 PF05239 PRC-barrel domain N288_09595 PF01746 tRNA (Guanine-1)-methyltransferase N288_09600 PF01245 Ribosomal protein L19 N288_09610 PF10502 Signal peptidase, peptidase S26 N288_09615 PF01926 50S ribosome-binding GTPase N288_09620 PF01351 Ribonuclease HII N288_09630 PF01312 FlhB HrpN YscU SpaS Family N288_09640 PF00549 CoA-ligase N288_09640 PF02629 CoA binding domain N288_09645 PF02481 DNA recombination-mediator protein A N288_09650 PF01131 DNA topoisomerase N288_09650 PF01751 Toprim domain N288_09650 PF01396 Topoisomerase DNA binding C4 zinc finger N288_09655 PF01134 Glucose inhibited division protein A N288_09660 PF00589 Phage integrase family N288_09660 PF02899 Phage integrase, N-terminal SAM-like domain N288_09665 PF00227 Proteasome subunit N288_09670 PF10431 C-terminal, D2-small domain, of ClpB protein N288_09670 PF00004 ATPase family associated with various cellular activities (AAA) N288_09670 PF07724 AAA domain (Cdc48 subfamily) N288_09675 PF08222 CodY helix-turn-helix domain N288_09675 PF06018 CodY GAF-like domain N288_09680 PF00460 Flagella basal body rod protein N288_09685 PF00460 Flagella basal body rod protein N288_09685 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N288_09690 PF02049 Flagellar hook-basal body complex protein FliE N288_09695 PF01514 Secretory protein of YscJ/FliF family N288_09695 PF08345 Flagellar M-ring protein C-terminal N288_09700 PF14842 FliG N-terminal domain N288_09700 PF14841 FliG middle domain N288_09700 PF01706 FliG C-terminal domain N288_09705 PF02108 Flagellar assembly protein FliH N288_09710 PF02874 ATP synthase alpha/beta family, beta-barrel domain N288_09710 PF18269 T3SS EscN ATPase C-terminal domain N288_09710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N288_09715 PF02050 Flagellar FliJ protein N288_09730 PF03963 Flagellar hook capping protein - N-terminal region N288_09740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N288_09740 PF00460 Flagella basal body rod protein N288_09745 PF06289 Flagellar and Swarming motility proteins N288_09750 PF03748 Flagellar basal body-associated protein FliL N288_09755 PF02154 Flagellar motor switch protein FliM N288_09755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N288_09760 PF04509 CheC-like family N288_09760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N288_09765 PF00072 Response regulator receiver domain N288_09770 PF04347 Flagellar biosynthesis protein, FliO N288_09775 PF00813 FliP family N288_09780 PF01313 Bacterial export proteins, family 3 N288_09785 PF01311 Bacterial export proteins, family 1 N288_09790 PF01312 FlhB HrpN YscU SpaS Family N288_09795 PF00771 FHIPEP family N288_09800 PF00448 SRP54-type protein, GTPase domain N288_09805 PF10609 NUBPL iron-transfer P-loop NTPase N288_09810 PF00072 Response regulator receiver domain N288_09810 PF01339 CheB methylesterase N288_09815 PF02895 Signal transducing histidine kinase, homodimeric domain N288_09815 PF01584 CheW-like domain N288_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_09815 PF07194 P2 response regulator binding domain N288_09815 PF01627 Hpt domain N288_09820 PF01584 CheW-like domain N288_09825 PF04509 CheC-like family N288_09830 PF03975 CheD chemotactic sensory transduction N288_09840 PF04542 Sigma-70 region 2 N288_09840 PF04539 Sigma-70 region 3 N288_09840 PF04545 Sigma-70, region 4 N288_09855 PF00318 Ribosomal protein S2 N288_09860 PF00889 Elongation factor TS N288_09865 PF00696 Amino acid kinase family N288_09870 PF01765 Ribosome recycling factor N288_09880 PF01255 Putative undecaprenyl diphosphate synthase N288_09890 PF13288 DXP reductoisomerase C-terminal domain N288_09890 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase N288_09890 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain N288_09900 PF02163 Peptidase family M50 N288_09900 PF13180 PDZ domain N288_09905 PF04073 Aminoacyl-tRNA editing domain N288_09905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N288_09905 PF03129 Anticodon binding domain N288_09910 PF01548 Transposase N288_09910 PF02371 Transposase IS116/IS110/IS902 family N288_09920 PF14579 Helix-hairpin-helix motif N288_09920 PF07733 Bacterial DNA polymerase III alpha NTPase domain N288_09920 PF02811 PHP domain N288_09920 PF11490 DNA polymerase III polC-type N-terminus II N288_09920 PF14480 DNA polymerase III polC-type N-terminus I N288_09920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N288_09920 PF00929 Exonuclease N288_09925 PF17384 RimP C-terminal SH3 domain N288_09925 PF02576 RimP N-terminal domain N288_09930 PF08529 NusA N-terminal domain N288_09930 PF00575 S1 RNA binding domain N288_09930 PF13184 NusA-like KH domain N288_09935 PF04296 Protein of unknown function (DUF448) N288_09940 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family N288_09945 PF00009 Elongation factor Tu GTP binding domain N288_09945 PF11987 Translation-initiation factor 2 N288_09945 PF04760 Translation initiation factor IF-2, N-terminal region N288_09950 PF04456 Protein of unknown function (DUF503) N288_09955 PF02033 Ribosome-binding factor A N288_09960 PF16198 tRNA pseudouridylate synthase B C-terminal domain N288_09960 PF01509 TruB family pseudouridylate synthase (N terminal domain) N288_09965 PF06574 FAD synthetase N288_09965 PF01687 Riboflavin kinase N288_09970 PF00312 Ribosomal protein S15 N288_09975 PF01138 3' exoribonuclease family, domain 1 N288_09975 PF03725 3' exoribonuclease family, domain 2 N288_09975 PF00575 S1 RNA binding domain N288_09975 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain N288_09975 PF00013 KH domain N288_09985 PF01522 Polysaccharide deacetylase N288_09990 PF00675 Insulinase (Peptidase family M16) N288_09990 PF05193 Peptidase M16 inactive domain N288_09995 PF05239 PRC-barrel domain N288_10005 PF01262 Alanine dehydrogenase/PNT, C-terminal domain N288_10005 PF16924 Dipicolinate synthase subunit A N-terminal domain N288_10010 PF02441 Flavoprotein N288_10020 PF01118 Semialdehyde dehydrogenase, NAD binding domain N288_10020 PF02774 Semialdehyde dehydrogenase, dimerisation domain N288_10025 PF13840 ACT domain N288_10025 PF00696 Amino acid kinase family N288_10030 PF00701 Dihydrodipicolinate synthetase family N288_10035 PF17770 Ribonuclease J C-terminal domain N288_10035 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain N288_10035 PF00753 Metallo-beta-lactamase superfamily N288_10040 PF00574 Clp protease N288_10045 PF14035 YlzJ-like protein N288_10055 PF09397 Ftsk gamma domain N288_10055 PF01580 FtsK/SpoIIIE family N288_10055 PF17854 FtsK alpha domain N288_10065 PF00392 Bacterial regulatory proteins, gntR family N288_10065 PF07702 UTRA domain N288_10090 PF00990 Diguanylate cyclase, GGDEF domain N288_10095 PF05193 Peptidase M16 inactive domain N288_10100 PF05193 Peptidase M16 inactive domain N288_10100 PF00675 Insulinase (Peptidase family M16) N288_10110 PF11588 Protein of unknown function (DUF3243) N288_10115 PF11868 Protein of unknown function (DUF3388) N288_10120 PF13464 Domain of unknown function (DUF4115) N288_10125 PF01066 CDP-alcohol phosphatidyltransferase N288_10130 PF02464 Competence-damaged protein N288_10130 PF18146 Damage-inducible protein CinA KH domain N288_10130 PF00994 Probable molybdopterin binding domain N288_10135 PF00154 recA bacterial DNA recombination protein N288_10140 PF01966 HD domain N288_10140 PF00013 KH domain N288_10140 PF12072 Domain of unknown function (DUF3552) N288_10145 PF13277 YmdB-like protein N288_10150 PF04232 Stage V sporulation protein S (SpoVS) N288_10155 PF01244 Membrane dipeptidase (Peptidase family M19) N288_10160 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg N288_10160 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase N288_10160 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II N288_10165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N288_10175 PF00919 Uncharacterized protein family UPF0004 N288_10175 PF01938 TRAM domain N288_10175 PF04055 Radical SAM superfamily N288_10180 PF06133 Control of competence regulator ComK, YlbF/YmcA N288_10185 PF10628 Outer spore coat protein E (CotE) N288_10195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_10200 PF05188 MutS domain II N288_10200 PF05192 MutS domain III N288_10200 PF00488 MutS domain V N288_10200 PF05190 MutS family domain IV N288_10200 PF01624 MutS domain I N288_10205 PF08676 MutL C terminal dimerisation domain N288_10205 PF01119 DNA mismatch repair protein, C-terminal domain N288_10245 PF17209 Hfq protein N288_10255 PF00004 ATPase family associated with various cellular activities (AAA) N288_10255 PF17866 AAA lid domain N288_10260 PF03458 UPF0126 domain N288_10265 PF16360 GTP-binding GTPase Middle Region N288_10265 PF13167 GTP-binding GTPase N-terminal N288_10265 PF01926 50S ribosome-binding GTPase N288_10270 PF06838 Methionine gamma-lyase N288_10275 PF13411 MerR HTH family regulatory protein N288_10280 PF00120 Glutamine synthetase, catalytic domain N288_10280 PF03951 Glutamine synthetase, beta-Grasp domain N288_10290 PF05036 Sporulation related domain N288_10290 PF01520 N-acetylmuramoyl-L-alanine amidase N288_10295 PF00534 Glycosyl transferases group 1 N288_10315 PF01381 Helix-turn-helix N288_10335 PF00717 Peptidase S24-like N288_10335 PF01726 LexA DNA binding domain N288_10340 PF01476 LysM domain N288_10345 PF00239 Resolvase, N terminal domain N288_10350 PF05979 Bacterial protein of unknown function (DUF896) N288_10355 PF02779 Transketolase, pyrimidine binding domain N288_10355 PF02780 Transketolase, C-terminal domain N288_10355 PF00456 Transketolase, thiamine diphosphate binding domain N288_10360 PF10747 Sporulation inhibitor of replication protein SirA N288_10365 PF03672 Uncharacterised protein family (UPF0154) N288_10380 PF00005 ABC transporter N288_10380 PF00664 ABC transporter transmembrane region N288_10385 PF00664 ABC transporter transmembrane region N288_10385 PF00005 ABC transporter N288_10390 PF09388 Spo0E like sporulation regulatory protein N288_10395 PF02683 Cytochrome C biogenesis protein transmembrane region N288_10400 PF00072 Response regulator receiver domain N288_10405 PF07301 Protein of unknown function (DUF1453) N288_10410 PF11084 Protein of unknown function (DUF2621) N288_10440 PF00528 Binding-protein-dependent transport system inner membrane component N288_10440 PF12911 N-terminal TM domain of oligopeptide transport permease C N288_10470 PF03323 Bacillus/Clostridium GerA spore germination protein N288_10490 PF04471 Restriction endonuclease N288_10490 PF14338 Mrr N-terminal domain N288_10495 PF01207 Dihydrouridine synthase (Dus) N288_10505 PF01380 SIS domain N288_10510 PF01547 Bacterial extracellular solute-binding protein N288_10515 PF00528 Binding-protein-dependent transport system inner membrane component N288_10520 PF00528 Binding-protein-dependent transport system inner membrane component N288_10525 PF00294 pfkB family carbohydrate kinase N288_10530 PF00392 Bacterial regulatory proteins, gntR family N288_10530 PF07702 UTRA domain N288_10540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N288_10540 PF00874 PRD domain N288_10540 PF05043 Mga helix-turn-helix domain N288_10540 PF08279 HTH domain N288_10545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N288_10550 PF02378 Phosphotransferase system, EIIC N288_10555 PF04794 YdjC-like protein N288_10560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N288_10565 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit N288_10570 PF02056 Family 4 glycosyl hydrolase N288_10570 PF11975 Family 4 glycosyl hydrolase C-terminal domain N288_10575 PF03466 LysR substrate binding domain N288_10575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N288_10580 PF01717 Cobalamin-independent synthase, Catalytic domain N288_10585 PF07486 Cell Wall Hydrolase N288_10590 PF06039 Malate:quinone oxidoreductase (Mqo) N288_10595 PF00300 Histidine phosphatase superfamily (branch 1) N288_10595 PF00293 NUDIX domain N288_10605 PF00072 Response regulator receiver domain N288_10605 PF00486 Transcriptional regulatory protein, C terminal N288_10610 PF00512 His Kinase A (phospho-acceptor) domain N288_10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_10620 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_10625 PF13847 Methyltransferase domain N288_10635 PF07516 SecA Wing and Scaffold domain N288_10635 PF01043 SecA preprotein cross-linking domain N288_10635 PF07517 SecA DEAD-like domain N288_10635 PF02810 SEC-C motif N288_10640 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family N288_10670 PF00672 HAMP domain N288_10670 PF05227 CHASE3 domain N288_10670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_10675 PF00392 Bacterial regulatory proteins, gntR family N288_10675 PF00155 Aminotransferase class I and II N288_10680 PF01177 Asp/Glu/Hydantoin racemase N288_10685 PF00664 ABC transporter transmembrane region N288_10685 PF00005 ABC transporter N288_10690 PF13472 GDSL-like Lipase/Acylhydrolase family N288_10695 PF17853 GGDEF-like domain N288_10695 PF12833 Helix-turn-helix domain N288_10700 PF07470 Glycosyl Hydrolase Family 88 N288_10705 PF00295 Glycosyl hydrolases family 28 N288_10710 PF01738 Dienelactone hydrolase family N288_10715 PF01370 NAD dependent epimerase/dehydratase family N288_10730 PF00528 Binding-protein-dependent transport system inner membrane component N288_10735 PF00528 Binding-protein-dependent transport system inner membrane component N288_10740 PF04854 Protein of unknown function, DUF624 N288_10745 PF13416 Bacterial extracellular solute-binding protein N288_10750 PF01095 Pectinesterase N288_10755 PF01095 Pectinesterase N288_10760 PF07859 alpha/beta hydrolase fold N288_10760 PF13472 GDSL-like Lipase/Acylhydrolase family N288_10770 PF00248 Aldo/keto reductase family N288_10775 PF02614 Glucuronate isomerase N288_10780 PF00356 Bacterial regulatory proteins, lacI family N288_10785 PF01232 Mannitol dehydrogenase Rossmann domain N288_10785 PF08125 Mannitol dehydrogenase C-terminal domain N288_10790 PF08666 SAF domain N288_10790 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus N288_10800 PF00294 pfkB family carbohydrate kinase N288_10805 PF04962 KduI/IolB family N288_10820 PF04294 VanW like protein N288_10845 PF13722 5TM C-terminal transporter carbon starvation CstA N288_10845 PF02554 Carbon starvation protein CstA N288_10855 PF02374 Anion-transporting ATPase N288_10860 PF12823 Domain of unknown function (DUF3817) N288_10880 PF00313 'Cold-shock' DNA-binding domain N288_10890 PF00149 Calcineurin-like phosphoesterase N288_10890 PF12320 Type 5 capsule protein repressor C-terminal domain N288_10895 PF13476 AAA domain N288_10905 PF00873 AcrB/AcrD/AcrF family N288_10910 PF00440 Bacterial regulatory proteins, tetR family N288_10920 PF09529 Integral membrane protein (intg_mem_TP0381) N288_10940 PF03630 Fumble N288_10945 PF03144 Elongation factor Tu domain 2 N288_10945 PF09107 Elongation factor SelB, winged helix N288_10945 PF00009 Elongation factor Tu GTP binding domain N288_10945 PF09105 Elongation factor SelB, winged helix N288_10945 PF09106 Elongation factor SelB, winged helix N288_10950 PF02225 PA domain N288_10950 PF04389 Peptidase family M28 N288_10955 PF00877 NlpC/P60 family N288_10955 PF01476 LysM domain N288_10960 PF13539 D-alanyl-D-alanine carboxypeptidase N288_10965 PF05343 M42 glutamyl aminopeptidase N288_10970 PF13426 PAS domain N288_10970 PF13188 PAS domain N288_10970 PF00512 His Kinase A (phospho-acceptor) domain N288_10970 PF00989 PAS fold N288_10970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_10975 PF01594 AI-2E family transporter N288_10980 PF12794 Mechanosensitive ion channel inner membrane domain 1 N288_10980 PF12795 Mechanosensitive ion channel porin domain N288_10980 PF00924 Mechanosensitive ion channel N288_10990 PF00877 NlpC/P60 family N288_10990 PF01476 LysM domain N288_11000 PF00296 Luciferase-like monooxygenase N288_11015 PF00884 Sulfatase N288_11030 PF04542 Sigma-70 region 2 N288_11030 PF08281 Sigma-70, region 4 N288_11045 PF02272 DHHA1 domain N288_11045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N288_11045 PF01411 tRNA synthetases class II (A) N288_11060 PF02525 Flavodoxin-like fold N288_11065 PF02525 Flavodoxin-like fold N288_11080 PF13426 PAS domain N288_11080 PF08447 PAS fold N288_11080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_11090 PF03315 Serine dehydratase beta chain N288_11090 PF01842 ACT domain N288_11095 PF03313 Serine dehydratase alpha chain N288_11100 PF00986 DNA gyrase B subunit, carboxyl terminus N288_11100 PF01751 Toprim domain N288_11100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_11100 PF00204 DNA gyrase B N288_11105 PF03848 Tellurite resistance protein TehB N288_11115 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N288_11115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_11145 PF00293 NUDIX domain N288_11150 PF00293 NUDIX domain N288_11150 PF13344 Haloacid dehalogenase-like hydrolase N288_11175 PF17151 Periplasmic sensor domain N288_11175 PF00990 Diguanylate cyclase, GGDEF domain N288_11190 PF01047 MarR family N288_11195 PF07690 Major Facilitator Superfamily N288_11200 PF00266 Aminotransferase class-V N288_11205 PF00266 Aminotransferase class-V N288_11210 PF04199 Putative cyclase N288_11220 PF13538 UvrD-like helicase C-terminal domain N288_11235 PF07687 Peptidase dimerisation domain N288_11235 PF01546 Peptidase family M20/M25/M40 N288_11245 PF01258 Prokaryotic dksA/traR C4-type zinc finger N288_11255 PF00501 AMP-binding enzyme N288_11255 PF14535 AMP-binding enzyme C-terminal domain N288_11260 PF05138 Phenylacetic acid catabolic protein N288_11275 PF01883 Iron-sulfur cluster assembly protein N288_11285 PF00378 Enoyl-CoA hydratase/isomerase N288_11290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N288_11290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N288_11295 PF02803 Thiolase, C-terminal domain N288_11295 PF00108 Thiolase, N-terminal domain N288_11300 PF08223 PaaX-like protein C-terminal domain N288_11300 PF07848 PaaX-like protein N288_11305 PF02028 BCCT, betaine/carnitine/choline family transporter N288_11310 PF01747 ATP-sulfurylase N288_11310 PF14306 PUA-like domain N288_11320 PF02080 TrkA-C domain N288_11320 PF03600 Citrate transporter N288_11325 PF02350 UDP-N-acetylglucosamine 2-epimerase N288_11330 PF02719 Polysaccharide biosynthesis protein N288_11340 PF02719 Polysaccharide biosynthesis protein N288_11345 PF00535 Glycosyl transferase family 2 N288_11350 PF00534 Glycosyl transferases group 1 N288_11350 PF13439 Glycosyltransferase Family 4 N288_11355 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase N288_11360 PF04321 RmlD substrate binding domain N288_11365 PF16363 GDP-mannose 4,6 dehydratase N288_11370 PF00483 Nucleotidyl transferase N288_11380 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N288_11415 PF00535 Glycosyl transferase family 2 N288_11435 PF00862 Sucrose synthase N288_11435 PF00534 Glycosyl transferases group 1 N288_11440 PF00535 Glycosyl transferase family 2 N288_11455 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 N288_11455 PF00535 Glycosyl transferase family 2 N288_11485 PF03060 Nitronate monooxygenase N288_11495 PF02653 Branched-chain amino acid transport system / permease component N288_11500 PF00005 ABC transporter N288_11500 PF12857 TOBE-like domain N288_11510 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N288_11510 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain N288_11515 PF00676 Dehydrogenase E1 component N288_11520 PF02780 Transketolase, C-terminal domain N288_11520 PF02779 Transketolase, pyrimidine binding domain N288_11525 PF00364 Biotin-requiring enzyme N288_11525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N288_11525 PF02817 e3 binding domain N288_11530 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_11530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N288_11535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_11540 PF00155 Aminotransferase class I and II N288_11545 PF01613 Flavin reductase like domain N288_11550 PF01557 Fumarylacetoacetate (FAA) hydrolase family N288_11565 PF02645 Uncharacterised protein, DegV family COG1307 N288_11570 PF00106 short chain dehydrogenase N288_11575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_11575 PF02770 Acyl-CoA dehydrogenase, middle domain N288_11575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_11580 PF02803 Thiolase, C-terminal domain N288_11580 PF00108 Thiolase, N-terminal domain N288_11585 PF13193 AMP-binding enzyme C-terminal domain N288_11585 PF00501 AMP-binding enzyme N288_11590 PF04239 Protein of unknown function (DUF421) N288_11595 PF05067 Manganese containing catalase N288_11615 PF00155 Aminotransferase class I and II N288_11615 PF00392 Bacterial regulatory proteins, gntR family N288_11625 PF01966 HD domain N288_11625 PF00672 HAMP domain N288_11635 PF00155 Aminotransferase class I and II N288_11640 PF01370 NAD dependent epimerase/dehydratase family N288_11645 PF00797 N-acetyltransferase N288_11665 PF03841 L-seryl-tRNA selenium transferase N288_11670 PF08179 Small acid-soluble spore protein P family N288_11685 PF00694 Aconitase C-terminal domain N288_11685 PF00330 Aconitase family (aconitate hydratase) N288_11700 PF00578 AhpC/TSA family N288_11710 PF08177 Small acid-soluble spore protein N family N288_11720 PF00004 ATPase family associated with various cellular activities (AAA) N288_11720 PF17866 AAA lid domain N288_11725 PF03061 Thioesterase superfamily N288_11735 PF01521 Iron-sulphur cluster biosynthesis N288_11750 PF00989 PAS fold N288_11750 PF13188 PAS domain N288_11750 PF00512 His Kinase A (phospho-acceptor) domain N288_11750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_11750 PF13426 PAS domain N288_11755 PF02660 Glycerol-3-phosphate acyltransferase N288_11760 PF01197 Ribosomal protein L31 N288_11785 PF00860 Permease family N288_11795 PF13380 CoA binding domain N288_11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_11800 PF00204 DNA gyrase B N288_11800 PF00986 DNA gyrase B subunit, carboxyl terminus N288_11800 PF01751 Toprim domain N288_11805 PF00521 DNA gyrase/topoisomerase IV, subunit A N288_11805 PF03989 DNA gyrase C-terminal domain, beta-propeller N288_11810 PF01235 Sodium:alanine symporter family N288_11835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N288_11840 PF01979 Amidohydrolase family N288_11840 PF13382 Adenine deaminase C-terminal domain N288_11850 PF00183 Hsp90 protein N288_11865 PF00586 AIR synthase related protein, N-terminal domain N288_11865 PF02769 AIR synthase related protein, C-terminal domain N288_11875 PF00528 Binding-protein-dependent transport system inner membrane component N288_11880 PF00005 ABC transporter N288_11885 PF01522 Polysaccharide deacetylase N288_11890 PF00293 NUDIX domain N288_11895 PF00581 Rhodanese-like domain N288_11900 PF00875 DNA photolyase N288_11900 PF03441 FAD binding domain of DNA photolyase N288_11905 PF01063 Amino-transferase class IV N288_11915 PF05430 S-adenosyl-L-methionine-dependent methyltransferase N288_11915 PF01266 FAD dependent oxidoreductase N288_11925 PF01566 Natural resistance-associated macrophage protein N288_11925 PF03358 NADPH-dependent FMN reductase N288_11940 PF00202 Aminotransferase class-III N288_11945 PF00171 Aldehyde dehydrogenase family N288_11955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin N288_11960 PF01979 Amidohydrolase family N288_11965 PF01180 Dihydroorotate dehydrogenase N288_11970 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N288_11970 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_11975 PF00795 Carbon-nitrogen hydrolase N288_11980 PF02675 S-adenosylmethionine decarboxylase N288_11985 PF01546 Peptidase family M20/M25/M40 N288_11985 PF07687 Peptidase dimerisation domain N288_11990 PF00171 Aldehyde dehydrogenase family N288_12005 PF00296 Luciferase-like monooxygenase N288_12010 PF00296 Luciferase-like monooxygenase N288_12020 PF17191 RecG wedge domain N288_12020 PF00270 DEAD/DEAH box helicase N288_12020 PF00271 Helicase conserved C-terminal domain N288_12025 PF10752 Protein of unknown function (DUF2533) N288_12030 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family N288_12035 PF08264 Anticodon-binding domain of tRNA N288_12035 PF00133 tRNA synthetases class I (I, L, M and V) N288_12050 PF00082 Subtilase family N288_12055 PF04101 Glycosyltransferase family 28 C-terminal domain N288_12055 PF03033 Glycosyltransferase family 28 N-terminal domain N288_12065 PF03372 Endonuclease/Exonuclease/phosphatase family N288_12070 PF03167 Uracil DNA glycosylase superfamily N288_12080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N288_12090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_12095 PF01966 HD domain N288_12105 PF00905 Penicillin binding protein transpeptidase domain N288_12105 PF00912 Transglycosylase N288_12110 PF01740 STAS domain N288_12110 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain N288_12115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_12130 PF07690 Major Facilitator Superfamily N288_12135 PF00188 Cysteine-rich secretory protein family N288_12140 PF01476 LysM domain N288_12140 PF00704 Glycosyl hydrolases family 18 N288_12160 PF00248 Aldo/keto reductase family N288_12195 PF06725 3D domain N288_12195 PF01476 LysM domain N288_12205 PF08439 Oligopeptidase F N288_12205 PF01432 Peptidase family M3 N288_12210 PF05139 Erythromycin esterase N288_12210 PF00156 Phosphoribosyl transferase domain N288_12230 PF09844 Uncharacterized conserved protein (COG2071) N288_12270 PF01773 Na+ dependent nucleoside transporter N-terminus N288_12270 PF07662 Na+ dependent nucleoside transporter C-terminus N288_12275 PF00488 MutS domain V N288_12275 PF01713 Smr domain N288_12280 PF00171 Aldehyde dehydrogenase family N288_12285 PF02630 SCO1/SenC N288_12295 PF00005 ABC transporter N288_12295 PF12848 ABC transporter N288_12305 PF03698 Uncharacterised protein family (UPF0180) N288_12310 PF00768 D-alanyl-D-alanine carboxypeptidase N288_12310 PF07943 Penicillin-binding protein 5, C-terminal domain N288_12330 PF00188 Cysteine-rich secretory protein family N288_12340 PF02540 NAD synthase N288_12345 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family N288_12345 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain N288_12345 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain N288_12350 PF00857 Isochorismatase family N288_12360 PF02632 BioY family N288_12365 PF03706 Lysylphosphatidylglycerol synthase TM region N288_12365 PF09924 Uncharacterised conserved protein (DUF2156) N288_12375 PF02096 60Kd inner membrane protein N288_12400 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like N288_12410 PF13193 AMP-binding enzyme C-terminal domain N288_12410 PF00501 AMP-binding enzyme N288_12420 PF01894 Uncharacterised protein family UPF0047 N288_12430 PF02522 Aminoglycoside 3-N-acetyltransferase N288_12445 PF02817 e3 binding domain N288_12445 PF00364 Biotin-requiring enzyme N288_12445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N288_12450 PF00676 Dehydrogenase E1 component N288_12450 PF16078 2-oxoglutarate dehydrogenase N-terminus N288_12450 PF16870 2-oxoglutarate dehydrogenase C-terminal N288_12450 PF02779 Transketolase, pyrimidine binding domain N288_12460 PF08141 Small acid-soluble spore protein H family N288_12465 PF01053 Cys/Met metabolism PLP-dependent enzyme N288_12470 PF01053 Cys/Met metabolism PLP-dependent enzyme N288_12475 PF02574 Homocysteine S-methyltransferase N288_12475 PF02219 Methylenetetrahydrofolate reductase N288_12480 PF02965 Vitamin B12 dependent methionine synthase, activation domain N288_12480 PF00809 Pterin binding enzyme N288_12480 PF02574 Homocysteine S-methyltransferase N288_12480 PF02310 B12 binding domain N288_12480 PF02607 B12 binding domain N288_12490 PF02682 Carboxyltransferase domain, subdomain C and D N288_12495 PF02626 Carboxyltransferase domain, subdomain A and B N288_12500 PF03746 LamB/YcsF family N288_12530 PF00753 Metallo-beta-lactamase superfamily N288_12550 PF00571 CBS domain N288_12550 PF03471 Transporter associated domain N288_12550 PF01595 Cyclin M transmembrane N-terminal domain N288_12555 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_12555 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_12575 PF01594 AI-2E family transporter N288_12595 PF02872 5'-nucleotidase, C-terminal domain N288_12595 PF00149 Calcineurin-like phosphoesterase N288_12605 PF02558 Ketopantoate reductase PanE/ApbA N288_12605 PF08546 Ketopantoate reductase PanE/ApbA C terminal N288_12615 PF02554 Carbon starvation protein CstA N288_12620 PF04397 LytTr DNA-binding domain N288_12620 PF00072 Response regulator receiver domain N288_12625 PF04397 LytTr DNA-binding domain N288_12625 PF00072 Response regulator receiver domain N288_12630 PF13492 GAF domain N288_12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_12630 PF06580 Histidine kinase N288_12630 PF07694 5TMR of 5TMR-LYT N288_12645 PF02632 BioY family N288_12650 PF10942 Protein of unknown function (DUF2619) N288_12655 PF00082 Subtilase family N288_12680 PF03323 Bacillus/Clostridium GerA spore germination protein N288_12685 PF08028 Acyl-CoA dehydrogenase, C-terminal domain N288_12685 PF02770 Acyl-CoA dehydrogenase, middle domain N288_12685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_12710 PF01022 Bacterial regulatory protein, arsR family N288_12715 PF01545 Cation efflux family N288_12715 PF16916 Dimerisation domain of Zinc Transporter N288_12720 PF04519 Polymer-forming cytoskeletal N288_12730 PF01740 STAS domain N288_12740 PF08264 Anticodon-binding domain of tRNA N288_12740 PF09334 tRNA synthetases class I (M) N288_12745 PF03061 Thioesterase superfamily N288_12755 PF13416 Bacterial extracellular solute-binding protein N288_12760 PF00528 Binding-protein-dependent transport system inner membrane component N288_12765 PF00528 Binding-protein-dependent transport system inner membrane component N288_12770 PF00005 ABC transporter N288_12770 PF08402 TOBE domain N288_12775 PF09515 Thiamine transporter protein (Thia_YuaJ) N288_12805 PF13419 Haloacid dehalogenase-like hydrolase N288_12815 PF00535 Glycosyl transferase family 2 N288_12825 PF00483 Nucleotidyl transferase N288_12835 PF01554 MatE N288_12850 PF13977 BetI-type transcriptional repressor, C-terminal N288_12850 PF00440 Bacterial regulatory proteins, tetR family N288_12875 PF00892 EamA-like transporter family N288_12880 PF01434 Peptidase family M41 N288_12880 PF06480 FtsH Extracellular N288_12880 PF17862 AAA+ lid domain N288_12880 PF00004 ATPase family associated with various cellular activities (AAA) N288_12890 PF01327 Polypeptide deformylase N288_12895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_12895 PF00512 His Kinase A (phospho-acceptor) domain N288_12895 PF00989 PAS fold N288_12895 PF13188 PAS domain N288_12895 PF13426 PAS domain N288_12905 PF13460 NAD(P)H-binding N288_12910 PF04055 Radical SAM superfamily N288_12915 PF01242 6-pyruvoyl tetrahydropterin synthase N288_12920 PF06508 Queuosine biosynthesis protein QueC N288_12935 PF01553 Acyltransferase N288_12960 PF04542 Sigma-70 region 2 N288_12960 PF04545 Sigma-70, region 4 N288_12970 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_12970 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_12985 PF00583 Acetyltransferase (GNAT) family N288_12990 PF02566 OsmC-like protein N288_12995 PF00557 Metallopeptidase family M24 N288_13005 PF01638 HxlR-like helix-turn-helix N288_13010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_13020 PF00106 short chain dehydrogenase N288_13030 PF06628 Catalase-related immune-responsive N288_13030 PF00199 Catalase N288_13060 PF08240 Alcohol dehydrogenase GroES-like domain N288_13060 PF00107 Zinc-binding dehydrogenase N288_13065 PF02581 Thiamine monophosphate synthase N288_13070 PF08543 Phosphomethylpyrimidine kinase N288_13075 PF02110 Hydroxyethylthiazole kinase family N288_13080 PF00672 HAMP domain N288_13080 PF00512 His Kinase A (phospho-acceptor) domain N288_13080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_13080 PF00989 PAS fold N288_13090 PF00486 Transcriptional regulatory protein, C terminal N288_13090 PF00072 Response regulator receiver domain N288_13105 PF13529 Peptidase_C39 like family N288_13115 PF00067 Cytochrome P450 N288_13145 PF04542 Sigma-70 region 2 N288_13145 PF08281 Sigma-70, region 4 N288_13150 PF00270 DEAD/DEAH box helicase N288_13150 PF00271 Helicase conserved C-terminal domain N288_13155 PF00293 NUDIX domain N288_13155 PF13344 Haloacid dehalogenase-like hydrolase N288_13160 PF10997 Alternate to MurJ N288_13170 PF00324 Amino acid permease N288_13190 PF01758 Sodium Bile acid symporter family N288_13200 PF03006 Haemolysin-III related N288_13210 PF13536 Putative multidrug resistance efflux transporter N288_13215 PF08892 YqcI/YcgG family N288_13235 PF02082 Transcriptional regulator N288_13240 PF00042 Globin N288_13240 PF00175 Oxidoreductase NAD-binding domain N288_13240 PF00970 Oxidoreductase FAD-binding domain N288_13250 PF14824 Sirohaem biosynthesis protein central N288_13255 PF01903 CbiX N288_13260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N288_13270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N288_13270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N288_13280 PF01747 ATP-sulfurylase N288_13280 PF14306 PUA-like domain N288_13285 PF01384 Phosphate transporter family N288_13290 PF01507 Phosphoadenosine phosphosulfate reductase family N288_13320 PF07726 ATPase family associated with various cellular activities (AAA) N288_13320 PF17863 AAA lid domain N288_13360 PF08281 Sigma-70, region 4 N288_13360 PF04542 Sigma-70 region 2 N288_13365 PF00196 Bacterial regulatory proteins, luxR family N288_13365 PF00072 Response regulator receiver domain N288_13370 PF07730 Histidine kinase N288_13375 PF00487 Fatty acid desaturase N288_13385 PF06800 Sugar transport protein N288_13405 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) N288_13420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_13450 PF00512 His Kinase A (phospho-acceptor) domain N288_13480 PF13732 Domain of unknown function (DUF4162) N288_13480 PF00005 ABC transporter N288_13485 PF00440 Bacterial regulatory proteins, tetR family N288_13520 PF01594 AI-2E family transporter N288_13525 PF01595 Cyclin M transmembrane N-terminal domain N288_13525 PF00571 CBS domain N288_13525 PF03471 Transporter associated domain N288_13545 PF02537 CrcB-like protein, Camphor Resistance (CrcB) N288_13550 PF02537 CrcB-like protein, Camphor Resistance (CrcB) N288_13555 PF03358 NADPH-dependent FMN reductase N288_13565 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N288_13565 PF01565 FAD binding domain N288_13570 PF05726 Pirin C-terminal cupin domain N288_13570 PF02678 Pirin N288_13595 PF09234 Domain of unknown function (DUF1963) N288_13625 PF00440 Bacterial regulatory proteins, tetR family N288_13655 PF13302 Acetyltransferase (GNAT) domain N288_13680 PF01370 NAD dependent epimerase/dehydratase family N288_13685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N288_13685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N288_13685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N288_13690 PF00483 Nucleotidyl transferase N288_13695 PF01636 Phosphotransferase enzyme family N288_13700 PF13439 Glycosyltransferase Family 4 N288_13700 PF00534 Glycosyl transferases group 1 N288_13760 PF01740 STAS domain N288_13765 PF00293 NUDIX domain N288_13775 PF06445 GyrI-like small molecule binding domain N288_13775 PF12833 Helix-turn-helix domain N288_13795 PF01212 Beta-eliminating lyase N288_13805 PF00005 ABC transporter N288_13805 PF00664 ABC transporter transmembrane region N288_13810 PF00664 ABC transporter transmembrane region N288_13810 PF00005 ABC transporter N288_13815 PF01047 MarR family N288_13825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_13825 PF00512 His Kinase A (phospho-acceptor) domain N288_13825 PF00989 PAS fold N288_13870 PF00248 Aldo/keto reductase family N288_13875 PF05525 Branched-chain amino acid transport protein N288_13880 PF07729 FCD domain N288_13880 PF00392 Bacterial regulatory proteins, gntR family N288_13890 PF00171 Aldehyde dehydrogenase family N288_13895 PF00465 Iron-containing alcohol dehydrogenase N288_13900 PF03358 NADPH-dependent FMN reductase N288_13905 PF08281 Sigma-70, region 4 N288_13905 PF04542 Sigma-70 region 2 N288_13910 PF13411 MerR HTH family regulatory protein N288_13925 PF01740 STAS domain N288_13925 PF13426 PAS domain N288_13950 PF03960 ArsC family N288_13990 PF01381 Helix-turn-helix N288_13995 PF13443 Cro/C1-type HTH DNA-binding domain N288_14000 PF11188 Protein of unknown function (DUF2975) N288_14010 PF00583 Acetyltransferase (GNAT) family N288_14015 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_14015 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_14020 PF00293 NUDIX domain N288_14045 PF08281 Sigma-70, region 4 N288_14045 PF04542 Sigma-70 region 2 N288_14070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N288_14085 PF00293 NUDIX domain N288_14095 PF00884 Sulfatase N288_14100 PF00266 Aminotransferase class-V N288_14110 PF00300 Histidine phosphatase superfamily (branch 1) N288_14125 PF05163 DinB family N288_14135 PF07690 Major Facilitator Superfamily N288_14145 PF04239 Protein of unknown function (DUF421) N288_14155 PF00248 Aldo/keto reductase family N288_14160 PF00480 ROK family N288_14165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N288_14165 PF00356 Bacterial regulatory proteins, lacI family N288_14170 PF00528 Binding-protein-dependent transport system inner membrane component N288_14175 PF00528 Binding-protein-dependent transport system inner membrane component N288_14180 PF13416 Bacterial extracellular solute-binding protein N288_14185 PF00232 Glycosyl hydrolase family 1 N288_14190 PF13302 Acetyltransferase (GNAT) domain N288_14195 PF01738 Dienelactone hydrolase family N288_14200 PF00805 Pentapeptide repeats (8 copies) N288_14215 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain N288_14215 PF00753 Metallo-beta-lactamase superfamily N288_14215 PF17770 Ribonuclease J C-terminal domain N288_14285 PF01432 Peptidase family M3 N288_14285 PF08439 Oligopeptidase F N288_14310 PF00884 Sulfatase N288_14335 PF01381 Helix-turn-helix N288_14360 PF17247 Family of unknown function (DUF5316) N288_14365 PF07683 Cobalamin synthesis protein cobW C-terminal domain N288_14365 PF02492 CobW/HypB/UreG, nucleotide-binding domain N288_14375 PF03773 Predicted permease N288_14380 PF09323 Domain of unknown function (DUF1980) N288_14420 PF01740 STAS domain N288_14420 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain N288_14425 PF01740 STAS domain N288_14435 PF12697 Alpha/beta hydrolase family N288_14445 PF11553 Protein of unknown function (DUF3231) N288_14450 PF08241 Methyltransferase domain N288_14475 PF00877 NlpC/P60 family N288_14475 PF08239 Bacterial SH3 domain N288_14475 PF01476 LysM domain N288_14495 PF07454 Stage II sporulation protein P (SpoIIP) N288_14500 PF00892 EamA-like transporter family N288_14505 PF02687 FtsX-like permease family N288_14510 PF00005 ABC transporter N288_14515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_14520 PF00486 Transcriptional regulatory protein, C terminal N288_14520 PF00072 Response regulator receiver domain N288_14535 PF13302 Acetyltransferase (GNAT) domain N288_14540 PF01625 Peptide methionine sulfoxide reductase N288_14550 PF13393 Histidyl-tRNA synthetase N288_14550 PF03129 Anticodon binding domain N288_14555 PF10778 Halocarboxylic acid dehydrogenase DehI N288_14560 PF00199 Catalase N288_14570 PF06445 GyrI-like small molecule binding domain N288_14570 PF12833 Helix-turn-helix domain N288_14575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_14580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_14585 PF04542 Sigma-70 region 2 N288_14585 PF08281 Sigma-70, region 4 N288_14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_14590 PF00512 His Kinase A (phospho-acceptor) domain N288_14590 PF16736 Single Cache-like N288_14590 PF00989 PAS fold N288_14595 PF00072 Response regulator receiver domain N288_14595 PF00486 Transcriptional regulatory protein, C terminal N288_14610 PF01938 TRAM domain N288_14610 PF05958 tRNA (Uracil-5-)-methyltransferase N288_14615 PF01435 Peptidase family M48 N288_14625 PF00672 HAMP domain N288_14625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_14625 PF00989 PAS fold N288_14625 PF00512 His Kinase A (phospho-acceptor) domain N288_14625 PF18698 Histidine kinase sensor domain N288_14630 PF00072 Response regulator receiver domain N288_14630 PF00486 Transcriptional regulatory protein, C terminal N288_14645 PF00672 HAMP domain N288_14645 PF02743 Cache domain N288_14645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_14650 PF16363 GDP-mannose 4,6 dehydratase N288_14660 PF00561 alpha/beta hydrolase fold N288_14665 PF06133 Control of competence regulator ComK, YlbF/YmcA N288_14700 PF08281 Sigma-70, region 4 N288_14700 PF04542 Sigma-70 region 2 N288_14710 PF01381 Helix-turn-helix N288_14715 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) N288_14720 PF03575 Peptidase family S51 N288_14740 PF01554 MatE N288_14780 PF00860 Permease family N288_14790 PF09335 SNARE associated Golgi protein N288_14800 PF05067 Manganese containing catalase N288_14810 PF03590 Aspartate-ammonia ligase N288_14860 PF07690 Major Facilitator Superfamily N288_14865 PF00440 Bacterial regulatory proteins, tetR family N288_14870 PF12911 N-terminal TM domain of oligopeptide transport permease C N288_14870 PF00528 Binding-protein-dependent transport system inner membrane component N288_14895 PF00253 Ribosomal protein S14p/S29e N288_14905 PF01970 Tripartite tricarboxylate transporter TctA family N288_14915 PF03401 Tripartite tricarboxylate transporter family receptor N288_14920 PF12431 Transcriptional regulator N288_14920 PF00072 Response regulator receiver domain N288_14920 PF08279 HTH domain N288_14925 PF00989 PAS fold N288_14925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_14925 PF17203 Single cache domain 3 N288_14925 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain N288_14935 PF06150 ChaB N288_14940 PF04172 LrgB-like family N288_14945 PF03788 LrgA family N288_14950 PF07690 Major Facilitator Superfamily N288_14955 PF00171 Aldehyde dehydrogenase family N288_14990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_14990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N288_15005 PF00149 Calcineurin-like phosphoesterase N288_15020 PF02585 GlcNAc-PI de-N-acetylase N288_15035 PF13217 Protein of unknown function (DUF4025) N288_15040 PF00583 Acetyltransferase (GNAT) family N288_15055 PF08281 Sigma-70, region 4 N288_15055 PF04542 Sigma-70 region 2 N288_15060 PF01541 GIY-YIG catalytic domain N288_15070 PF01274 Malate synthase N288_15090 PF12679 ABC-2 family transporter protein N288_15095 PF00005 ABC transporter N288_15100 PF00005 ABC transporter N288_15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_15105 PF00989 PAS fold N288_15105 PF13188 PAS domain N288_15105 PF00512 His Kinase A (phospho-acceptor) domain N288_15105 PF13426 PAS domain N288_15120 PF01594 AI-2E family transporter N288_15130 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain N288_15130 PF01740 STAS domain N288_15140 PF08281 Sigma-70, region 4 N288_15140 PF04542 Sigma-70 region 2 N288_15145 PF02567 Phenazine biosynthesis-like protein N288_15155 PF00528 Binding-protein-dependent transport system inner membrane component N288_15160 PF00881 Nitroreductase family N288_15180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N288_15180 PF02874 ATP synthase alpha/beta family, beta-barrel domain N288_15190 PF00011 Hsp20/alpha crystallin family N288_15210 PF01022 Bacterial regulatory protein, arsR family N288_15235 PF00571 CBS domain N288_15235 PF03471 Transporter associated domain N288_15235 PF01595 Cyclin M transmembrane N-terminal domain N288_15245 PF00672 HAMP domain N288_15245 PF12729 Four helix bundle sensory module for signal transduction N288_15245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_15250 PF00877 NlpC/P60 family N288_15265 PF00893 Small Multidrug Resistance protein N288_15270 PF02074 Carboxypeptidase Taq (M32) metallopeptidase N288_15275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N288_15285 PF06964 Alpha-L-arabinofuranosidase C-terminal domain N288_15290 PF02660 Glycerol-3-phosphate acyltransferase N288_15300 PF00326 Prolyl oligopeptidase family N288_15315 PF00403 Heavy-metal-associated domain N288_15320 PF00403 Heavy-metal-associated domain N288_15345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N288_15350 PF03992 Antibiotic biosynthesis monooxygenase N288_15360 PF00367 phosphotransferase system, EIIB N288_15360 PF02378 Phosphotransferase system, EIIC N288_15365 PF01380 SIS domain N288_15390 PF01925 Sulfite exporter TauE/SafE N288_15400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N288_15405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_15405 PF00005 ABC transporter N288_15410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N288_15410 PF00005 ABC transporter N288_15415 PF00528 Binding-protein-dependent transport system inner membrane component N288_15415 PF12911 N-terminal TM domain of oligopeptide transport permease C N288_15420 PF00528 Binding-protein-dependent transport system inner membrane component N288_15425 PF04951 D-aminopeptidase N288_15430 PF05343 M42 glutamyl aminopeptidase N288_15435 PF01037 Lrp/AsnC ligand binding domain N288_15435 PF13404 AsnC-type helix-turn-helix domain N288_15440 PF01979 Amidohydrolase family N288_15445 PF07690 Major Facilitator Superfamily N288_15450 PF02634 FdhD/NarQ family N288_15455 PF06463 Molybdenum Cofactor Synthesis C N288_15455 PF04055 Radical SAM superfamily N288_15460 PF02566 OsmC-like protein N288_15475 PF00939 Sodium:sulfate symporter transmembrane region N288_15480 PF01380 SIS domain N288_15480 PF01418 Helix-turn-helix domain, rpiR family N288_15495 PF13411 MerR HTH family regulatory protein N288_15515 PF00583 Acetyltransferase (GNAT) family N288_15520 PF00795 Carbon-nitrogen hydrolase N288_15520 PF00583 Acetyltransferase (GNAT) family N288_15525 PF03707 Bacterial signalling protein N terminal repeat N288_15525 PF00990 Diguanylate cyclase, GGDEF domain N288_15525 PF00563 EAL domain N288_15530 PF00664 ABC transporter transmembrane region N288_15530 PF00005 ABC transporter N288_15555 PF02586 SOS response associated peptidase (SRAP) N288_15560 PF05067 Manganese containing catalase N288_15565 PF02457 DisA bacterial checkpoint controller nucleotide-binding N288_15565 PF10372 Bacterial membrane-spanning protein N-terminus N288_15570 PF00753 Metallo-beta-lactamase superfamily N288_15575 PF13649 Methyltransferase domain N288_15580 PF03601 Conserved hypothetical protein 698 N288_15595 PF00005 ABC transporter N288_15600 PF00290 Tryptophan synthase alpha chain N288_15605 PF00291 Pyridoxal-phosphate dependent enzyme N288_15610 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase N288_15615 PF00218 Indole-3-glycerol phosphate synthase N288_15620 PF00591 Glycosyl transferase family, a/b domain N288_15620 PF02885 Glycosyl transferase family, helical bundle domain N288_15625 PF00117 Glutamine amidotransferase class-I N288_15640 PF03475 3-alpha domain N288_15640 PF03473 MOSC domain N288_15645 PF07690 Major Facilitator Superfamily N288_15650 PF00672 HAMP domain N288_15650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_15650 PF02743 Cache domain N288_15655 PF00561 alpha/beta hydrolase fold N288_15685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N288_15685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N288_15690 PF00294 pfkB family carbohydrate kinase N288_15695 PF00455 DeoR C terminal sensor domain N288_15695 PF08220 DeoR-like helix-turn-helix domain N288_15705 PF00317 Ribonucleotide reductase, all-alpha domain N288_15705 PF02867 Ribonucleotide reductase, barrel domain N288_15705 PF03477 ATP cone domain N288_15710 PF00268 Ribonucleotide reductase, small chain N288_15720 PF00491 Arginase family N288_15725 PF01979 Amidohydrolase family N288_15730 PF01175 Urocanase Rossmann-like domain N288_15730 PF17392 Urocanase C-terminal domain N288_15730 PF17391 Urocanase N-terminal domain N288_15735 PF12833 Helix-turn-helix domain N288_15740 PF06081 Aromatic acid exporter family member 1 N288_15770 PF07690 Major Facilitator Superfamily N288_15775 PF00072 Response regulator receiver domain N288_15775 PF00486 Transcriptional regulatory protein, C terminal N288_15780 PF01739 CheR methyltransferase, SAM binding domain N288_15780 PF03705 CheR methyltransferase, all-alpha domain N288_15785 PF00072 Response regulator receiver domain N288_15785 PF09308 LuxQ, periplasmic N288_15785 PF00512 His Kinase A (phospho-acceptor) domain N288_15785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_15790 PF08141 Small acid-soluble spore protein H family N288_15795 PF00571 CBS domain N288_15795 PF03448 MgtE intracellular N domain N288_15795 PF01769 Divalent cation transporter N288_15800 PF01810 LysE type translocator N288_15825 PF13472 GDSL-like Lipase/Acylhydrolase family N288_15830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_15830 PF00512 His Kinase A (phospho-acceptor) domain N288_15830 PF02743 Cache domain N288_15870 PF00313 'Cold-shock' DNA-binding domain N288_15875 PF00271 Helicase conserved C-terminal domain N288_15875 PF00270 DEAD/DEAH box helicase N288_15880 PF00313 'Cold-shock' DNA-binding domain N288_15885 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain N288_15885 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain N288_15895 PF01569 PAP2 superfamily N288_15900 PF02735 Ku70/Ku80 beta-barrel domain N288_15905 PF01068 ATP dependent DNA ligase domain N288_15910 PF01678 Diaminopimelate epimerase N288_15920 PF00563 EAL domain N288_15920 PF08668 HDOD domain N288_15925 PF00860 Permease family N288_15930 PF00885 6,7-dimethyl-8-ribityllumazine synthase N288_15935 PF00925 GTP cyclohydrolase II N288_15935 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N288_15940 PF00677 Lumazine binding domain N288_15945 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N288_15945 PF01872 RibD C-terminal domain N288_15950 PF12787 EcsC protein family N288_15955 PF00578 AhpC/TSA family N288_15960 PF03860 Domain of Unknown Function (DUF326) N288_15970 PF01734 Patatin-like phospholipase N288_15980 PF02673 Bacitracin resistance protein BacA N288_15985 PF09335 SNARE associated Golgi protein N288_15990 PF01979 Amidohydrolase family N288_16015 PF00924 Mechanosensitive ion channel N288_16035 PF00011 Hsp20/alpha crystallin family N288_16045 PF00188 Cysteine-rich secretory protein family N288_16050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_16050 PF00672 HAMP domain N288_16050 PF00512 His Kinase A (phospho-acceptor) domain N288_16055 PF00072 Response regulator receiver domain N288_16055 PF00486 Transcriptional regulatory protein, C terminal N288_16080 PF01047 MarR family N288_16085 PF02492 CobW/HypB/UreG, nucleotide-binding domain N288_16085 PF07683 Cobalamin synthesis protein cobW C-terminal domain N288_16090 PF03816 Cell envelope-related transcriptional attenuator domain N288_16095 PF01471 Putative peptidoglycan binding domain N288_16095 PF17820 PDZ domain N288_16095 PF03572 Peptidase family S41 N288_16105 PF02557 D-alanyl-D-alanine carboxypeptidase N288_16110 PF01048 Phosphorylase superfamily N288_16125 PF14191 YodL-like N288_16135 PF07070 SpoOM protein N288_16140 PF10720 Protein of unknown function (DUF2515) N288_16145 PF14162 YozD-like protein N288_16160 PF06855 YozE SAM-like fold N288_16170 PF13089 Polyphosphate kinase N-terminal domain N288_16170 PF17941 Polyphosphate kinase C-terminal domain 1 N288_16170 PF13090 Polyphosphate kinase C-terminal domain 2 N288_16170 PF02503 Polyphosphate kinase middle domain N288_16180 PF14122 YokU-like protein, putative antitoxin N288_16185 PF12544 Lysine-2,3-aminomutase N288_16190 PF02954 Bacterial regulatory protein, Fis family N288_16190 PF13426 PAS domain N288_16190 PF00158 Sigma-54 interaction domain N288_16195 PF00583 Acetyltransferase (GNAT) family N288_16200 PF00171 Aldehyde dehydrogenase family N288_16205 PF01546 Peptidase family M20/M25/M40 N288_16205 PF07687 Peptidase dimerisation domain N288_16210 PF01144 Coenzyme A transferase N288_16215 PF01144 Coenzyme A transferase N288_16220 PF00202 Aminotransferase class-III N288_16225 PF10842 Protein of unknown function (DUF2642) N288_16235 PF05227 CHASE3 domain N288_16235 PF00672 HAMP domain N288_16235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_16255 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N288_16260 PF01641 SelR domain N288_16265 PF01625 Peptide methionine sulfoxide reductase N288_16270 PF03193 RsgA GTPase N288_16290 PF13472 GDSL-like Lipase/Acylhydrolase family N288_16295 PF02630 SCO1/SenC N288_16300 PF05504 Spore germination B3/ GerAC like, C-terminal N288_16305 PF03845 Spore germination protein N288_16310 PF03323 Bacillus/Clostridium GerA spore germination protein N288_16320 PF02645 Uncharacterised protein, DegV family COG1307 N288_16325 PF10751 Protein of unknown function (DUF2535) N288_16335 PF00585 C-terminal regulatory domain of Threonine dehydratase N288_16335 PF00291 Pyridoxal-phosphate dependent enzyme N288_16345 PF00186 Dihydrofolate reductase N288_16350 PF00303 Thymidylate synthase N288_16360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N288_16360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N288_16360 PF03129 Anticodon binding domain N288_16360 PF02824 TGS domain N288_16370 PF02342 TerD domain N288_16375 PF02342 TerD domain N288_16380 PF05816 Toxic anion resistance protein (TelA) N288_16385 PF14266 Putative component of 'biosynthetic module' N288_16415 PF03741 Integral membrane protein TerC family N288_16420 PF02342 TerD domain N288_16425 PF14005 YpjP-like protein N288_16430 PF00155 Aminotransferase class I and II N288_16435 PF04445 Putative SAM-dependent methyltransferase N288_16440 PF06491 Disulphide isomerase N288_16445 PF00920 Dehydratase family N288_16450 PF13769 Virulence factor N288_16450 PF08712 Scaffold protein Nfu/NifU N terminal N288_16455 PF00005 ABC transporter N288_16455 PF16326 ABC transporter C-terminal domain N288_16455 PF12848 ABC transporter N288_16460 PF01966 HD domain N288_16465 PF02645 Uncharacterised protein, DegV family COG1307 N288_16480 PF00255 Glutathione peroxidase N288_16490 PF01268 Formate--tetrahydrofolate ligase N288_16495 PF04204 Homoserine O-succinyltransferase N288_16520 PF02742 Iron dependent repressor, metal binding and dimerisation domain N288_16520 PF01325 Iron dependent repressor, N-terminal DNA binding domain N288_16530 PF00950 ABC 3 transport family N288_16535 PF00950 ABC 3 transport family N288_16540 PF00005 ABC transporter N288_16545 PF01297 Zinc-uptake complex component A periplasmic N288_16560 PF11871 Domain of unknown function (DUF3391) N288_16560 PF01966 HD domain N288_16565 PF00313 'Cold-shock' DNA-binding domain N288_16575 PF13456 Reverse transcriptase-like N288_16580 PF02592 Putative vitamin uptake transporter N288_16585 PF13456 Reverse transcriptase-like N288_16600 PF02681 Divergent PAP2 family N288_16610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N288_16610 PF01367 5'-3' exonuclease, C-terminal SAM fold N288_16620 PF00581 Rhodanese-like domain N288_16630 PF10127 RNA repair pathway DNA polymerase beta family N288_16635 PF00350 Dynamin family N288_16640 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family N288_16645 PF02797 Chalcone and stilbene synthases, C-terminal domain N288_16645 PF00195 Chalcone and stilbene synthases, N-terminal domain N288_16665 PF04973 Nicotinamide mononucleotide transporter N288_16680 PF00860 Permease family N288_16685 PF00156 Phosphoribosyl transferase domain N288_16695 PF00116 Cytochrome C oxidase subunit II, periplasmic domain N288_16695 PF09125 Cytochrome C oxidase subunit II, transmembrane N288_16700 PF00115 Cytochrome C and Quinol oxidase polypeptide I N288_16710 PF02074 Carboxypeptidase Taq (M32) metallopeptidase N288_16720 PF13307 Helicase C-terminal domain N288_16730 PF02926 THUMP domain N288_16730 PF01170 Putative RNA methylase family UPF0020 N288_16745 PF05103 DivIVA protein N288_16750 PF06908 YspA SLOG family N288_16755 PF11122 Inner spore coat protein D N288_16765 PF13482 RNase_H superfamily N288_16770 PF00271 Helicase conserved C-terminal domain N288_16770 PF09369 Domain of unknown function (DUF1998) N288_16770 PF00270 DEAD/DEAH box helicase N288_16790 PF01433 Peptidase family M1 domain N288_16790 PF11838 ERAP1-like C-terminal domain N288_16795 PF00528 Binding-protein-dependent transport system inner membrane component N288_16800 PF14179 YppG-like protein N288_16805 PF14178 YppF-like protein N288_16825 PF10720 Protein of unknown function (DUF2515) N288_16830 PF03838 Recombination protein U N288_16835 PF00905 Penicillin binding protein transpeptidase domain N288_16835 PF00912 Transglycosylase N288_16845 PF10576 Iron-sulfur binding domain of endonuclease III N288_16845 PF00633 Helix-hairpin-helix motif N288_16845 PF00730 HhH-GPD superfamily base excision DNA repair protein N288_16850 PF07261 Replication initiation and membrane attachment N288_16855 PF00155 Aminotransferase class I and II N288_16865 PF14084 Protein of unknown function (DUF4264) N288_16875 PF13307 Helicase C-terminal domain N288_16875 PF04851 Type III restriction enzyme, res subunit N288_16875 PF00929 Exonuclease N288_16885 PF02261 Aspartate decarboxylase N288_16890 PF02569 Pantoate-beta-alanine ligase N288_16895 PF02548 Ketopantoate hydroxymethyltransferase N288_16905 PF03099 Biotin/lipoate A/B protein ligase family N288_16905 PF08279 HTH domain N288_16905 PF02237 Biotin protein ligase C terminal domain N288_16910 PF01743 Poly A polymerase head domain N288_16910 PF13735 tRNA nucleotidyltransferase domain 2 putative N288_16910 PF12627 Probable RNA and SrmB- binding site of polymerase A N288_16915 PF13439 Glycosyltransferase Family 4 N288_16915 PF00534 Glycosyl transferases group 1 N288_16920 PF02585 GlcNAc-PI de-N-acetylase N288_16925 PF02142 MGS-like domain N288_16930 PF01113 Dihydrodipicolinate reductase, N-terminus N288_16930 PF05173 Dihydrodipicolinate reductase, C-terminus N288_16935 PF03819 MazG nucleotide pyrophosphohydrolase domain N288_16940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_16940 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_16945 PF04298 Putative neutral zinc metallopeptidase N288_16950 PF09577 Sporulation protein YpjB (SpoYpjB) N288_16955 PF07187 Protein of unknown function (DUF1405) N288_16960 PF00032 Cytochrome b(C-terminal)/b6/petD N288_16960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N288_16965 PF00033 Cytochrome b/b6/petB N288_16970 PF00355 Rieske [2Fe-2S] domain N288_16975 PF10673 Protein of unknown function (DUF2487) N288_16980 PF08864 UPF0302 domain N288_16980 PF08858 IDEAL domain N288_17000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N288_17005 PF01842 ACT domain N288_17005 PF02153 Prephenate dehydrogenase N288_17010 PF00155 Aminotransferase class I and II N288_17015 PF07736 Chorismate mutase type I N288_17020 PF01761 3-dehydroquinate synthase N288_17025 PF01264 Chorismate synthase N288_17030 PF03705 CheR methyltransferase, all-alpha domain N288_17030 PF01739 CheR methyltransferase, SAM binding domain N288_17035 PF00334 Nucleoside diphosphate kinase N288_17040 PF00348 Polyprenyl synthetase N288_17045 PF01209 ubiE/COQ5 methyltransferase family N288_17050 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 N288_17055 PF02081 Tryptophan RNA-binding attenuator protein N288_17060 PF01227 GTP cyclohydrolase I N288_17065 PF00216 Bacterial DNA-binding protein N288_17070 PF09547 Stage IV sporulation protein A (spore_IV_A) N288_17090 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus N288_17090 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus N288_17095 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal N288_17095 PF01926 50S ribosome-binding GTPase N288_17105 PF14045 YIEGIA protein N288_17115 PF14140 YpzI-like protein N288_17120 PF01070 FMN-dependent dehydrogenase N288_17125 PF00575 S1 RNA binding domain N288_17130 PF01553 Acyltransferase N288_17135 PF02224 Cytidylate kinase N288_17150 PF03413 Peptidase propeptide and YPEB domain N288_17150 PF14620 YpeB sporulation N288_17155 PF07486 Cell Wall Hydrolase N288_17155 PF01471 Putative peptidoglycan binding domain N288_17160 PF13367 PrsW family intramembrane metalloprotease N288_17165 PF00710 Asparaginase, N-terminal N288_17165 PF17763 Glutaminase/Asparaginase C-terminal domain N288_17175 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain N288_17175 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N288_17180 PF05389 Negative regulator of genetic competence (MecA) N288_17185 PF02310 B12 binding domain N288_17185 PF02607 B12 binding domain N288_17185 PF13411 MerR HTH family regulatory protein N288_17190 PF00149 Calcineurin-like phosphoesterase N288_17205 PF10864 Protein of unknown function (DUF2663) N288_17215 PF01476 LysM domain N288_17220 PF02517 CPBP intramembrane metalloprotease N288_17225 PF00271 Helicase conserved C-terminal domain N288_17225 PF00270 DEAD/DEAH box helicase N288_17230 PF14493 Helix-turn-helix domain N288_17240 PF12822 ECF transporter, substrate-specific component N288_17245 PF01965 DJ-1/PfpI family N288_17255 PF13411 MerR HTH family regulatory protein N288_17265 PF00209 Sodium:neurotransmitter symporter family N288_17270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N288_17270 PF01842 ACT domain N288_17270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N288_17275 PF02811 PHP domain N288_17280 PF01551 Peptidase family M23 N288_17280 PF04225 Opacity-associated protein A LysM-like domain N288_17290 PF04542 Sigma-70 region 2 N288_17290 PF08281 Sigma-70, region 4 N288_17295 PF00672 HAMP domain N288_17295 PF00989 PAS fold N288_17295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_17295 PF00512 His Kinase A (phospho-acceptor) domain N288_17295 PF18698 Histidine kinase sensor domain N288_17300 PF00072 Response regulator receiver domain N288_17300 PF00486 Transcriptional regulatory protein, C terminal N288_17305 PF01578 Cytochrome C assembly protein N288_17310 PF05140 ResB-like family N288_17315 PF00578 AhpC/TSA family N288_17320 PF00849 RNA pseudouridylate synthase N288_17320 PF01479 S4 domain N288_17325 PF07670 Nucleoside recognition N288_17330 PF07670 Nucleoside recognition N288_17335 PF00768 D-alanyl-D-alanine carboxypeptidase N288_17335 PF07943 Penicillin-binding protein 5, C-terminal domain N288_17340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N288_17340 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N288_17350 PF13047 Protein of unknown function (DUF3907) N288_17365 PF04079 Segregation and condensation complex subunit ScpB N288_17370 PF02616 Segregation and condensation protein ScpA N288_17380 PF03745 Domain of unknown function (DUF309) N288_17385 PF00583 Acetyltransferase (GNAT) family N288_17395 PF06207 Protein of unknown function (DUF1002) N288_17400 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N288_17400 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N288_17405 PF03323 Bacillus/Clostridium GerA spore germination protein N288_17410 PF14097 Stage V sporulation protein AE1 N288_17415 PF13782 Stage V sporulation protein AB N288_17420 PF12164 Stage V sporulation protein AA N288_17425 PF04539 Sigma-70 region 3 N288_17425 PF04545 Sigma-70, region 4 N288_17425 PF04542 Sigma-70 region 2 N288_17430 PF13581 Histidine kinase-like ATPase domain N288_17435 PF01740 STAS domain N288_17440 PF00768 D-alanyl-D-alanine carboxypeptidase N288_17440 PF07943 Penicillin-binding protein 5, C-terminal domain N288_17445 PF00591 Glycosyl transferase family, a/b domain N288_17445 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain N288_17445 PF02885 Glycosyl transferase family, helical bundle domain N288_17450 PF01048 Phosphorylase superfamily N288_17455 PF01676 Metalloenzyme superfamily N288_17460 PF00589 Phage integrase family N288_17460 PF02899 Phage integrase, N-terminal SAM-like domain N288_17465 PF14004 Protein of unknown function (DUF4227) N288_17475 PF01475 Ferric uptake regulator family N288_17480 PF01944 Stage II sporulation protein M N288_17495 PF00293 NUDIX domain N288_17500 PF13072 Mother cell inhibitor of FtsZ N288_17505 PF00248 Aldo/keto reductase family N288_17510 PF13673 Acetyltransferase (GNAT) domain N288_17510 PF04229 GrpB protein N288_17525 PF01144 Coenzyme A transferase N288_17530 PF01144 Coenzyme A transferase N288_17535 PF02803 Thiolase, C-terminal domain N288_17535 PF00108 Thiolase, N-terminal domain N288_17540 PF00682 HMGL-like N288_17550 PF12146 Serine aminopeptidase, S33 N288_17570 PF08863 YolD-like protein N288_17575 PF11799 impB/mucB/samB family C-terminal domain N288_17575 PF11798 IMS family HHH motif N288_17575 PF00817 impB/mucB/samB family N288_17585 PF00106 short chain dehydrogenase N288_17590 PF00753 Metallo-beta-lactamase superfamily N288_17595 PF03807 NADP oxidoreductase coenzyme F420-dependent N288_17595 PF14748 Pyrroline-5-carboxylate reductase dimerisation N288_17600 PF00535 Glycosyl transferase family 2 N288_17605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N288_17620 PF00753 Metallo-beta-lactamase superfamily N288_17620 PF12706 Beta-lactamase superfamily domain N288_17625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain N288_17625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain N288_17630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N288_17630 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain N288_17635 PF11799 impB/mucB/samB family C-terminal domain N288_17635 PF11798 IMS family HHH motif N288_17635 PF00817 impB/mucB/samB family N288_17645 PF01584 CheW-like domain N288_17650 PF01546 Peptidase family M20/M25/M40 N288_17650 PF07687 Peptidase dimerisation domain N288_17655 PF01039 Carboxyl transferase domain N288_17670 PF03734 L,D-transpeptidase catalytic domain N288_17675 PF11728 Putative aromatic acid exporter C-terminal domain N288_17675 PF06081 Aromatic acid exporter family member 1 N288_17680 PF00005 ABC transporter N288_17685 PF00528 Binding-protein-dependent transport system inner membrane component N288_17695 PF00497 Bacterial extracellular solute-binding proteins, family 3 N288_17700 PF06491 Disulphide isomerase N288_17710 PF01642 Methylmalonyl-CoA mutase N288_17710 PF02310 B12 binding domain N288_17715 PF01642 Methylmalonyl-CoA mutase N288_17720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N288_17720 PF00364 Biotin-requiring enzyme N288_17720 PF02817 e3 binding domain N288_17725 PF02779 Transketolase, pyrimidine binding domain N288_17725 PF02780 Transketolase, C-terminal domain N288_17730 PF00676 Dehydrogenase E1 component N288_17735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N288_17735 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_17740 PF00871 Acetokinase family N288_17745 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N288_17745 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain N288_17750 PF01515 Phosphate acetyl/butaryl transferase N288_17755 PF02954 Bacterial regulatory protein, Fis family N288_17755 PF00989 PAS fold N288_17755 PF00158 Sigma-54 interaction domain N288_17760 PF11118 Protein of unknown function (DUF2627) N288_17765 PF14174 YycC-like protein N288_17775 PF08769 Sporulation initiation factor Spo0A C terminal N288_17775 PF00072 Response regulator receiver domain N288_17785 PF05580 SpoIVB peptidase S55 N288_17785 PF17820 PDZ domain N288_17790 PF13476 AAA domain N288_17795 PF01316 Arginine repressor, DNA binding domain N288_17795 PF02863 Arginine repressor, C-terminal domain N288_17800 PF01479 S4 domain N288_17800 PF01728 FtsJ-like methyltransferase N288_17805 PF02780 Transketolase, C-terminal domain N288_17805 PF02779 Transketolase, pyrimidine binding domain N288_17805 PF13292 1-deoxy-D-xylulose-5-phosphate synthase N288_17815 PF00348 Polyprenyl synthetase N288_17820 PF02609 Exonuclease VII small subunit N288_17825 PF02601 Exonuclease VII, large subunit N288_17825 PF13742 OB-fold nucleic acid binding domain N288_17830 PF01029 NusB family N288_17835 PF03780 Asp23 family, cell envelope-related function N288_17840 PF02785 Biotin carboxylase C-terminal domain N288_17840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N288_17840 PF00289 Biotin carboxylase, N-terminal domain N288_17845 PF00364 Biotin-requiring enzyme N288_17850 PF05227 CHASE3 domain N288_17850 PF00672 HAMP domain N288_17850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_17855 PF12685 SpoIIIAH-like protein N288_17865 PF09581 Stage III sporulation protein AF (Spore_III_AF) N288_17870 PF09546 Stage III sporulation protein AE (spore_III_AE) N288_17875 PF06686 Stage III sporulation protein AC/AD protein family N288_17885 PF06686 Stage III sporulation protein AC/AD protein family N288_17890 PF09548 Stage III sporulation protein AB (spore_III_AB) N288_17905 PF04402 Protein of unknown function (DUF541) N288_17915 PF09285 Elongation factor P, C-terminal N288_17915 PF08207 Elongation factor P (EF-P) KOW-like domain N288_17915 PF01132 Elongation factor P (EF-P) OB domain N288_17920 PF01321 Creatinase/Prolidase N-terminal domain N288_17920 PF00557 Metallopeptidase family M24 N288_17925 PF01220 Dehydroquinase class II N288_17930 PF11085 Conserved membrane protein YqhR N288_17935 PF07136 Protein of unknown function (DUF1385) N288_17945 PF01734 Patatin-like phospholipase N288_17955 PF02867 Ribonucleotide reductase, barrel domain N288_17955 PF03477 ATP cone domain N288_17955 PF00317 Ribonucleotide reductase, all-alpha domain N288_17965 PF03099 Biotin/lipoate A/B protein ligase family N288_17970 PF00581 Rhodanese-like domain N288_17975 PF02347 Glycine cleavage system P-protein N288_17980 PF02347 Glycine cleavage system P-protein N288_17985 PF01571 Aminomethyltransferase folate-binding domain N288_17985 PF08669 Glycine cleavage T-protein C-terminal barrel domain N288_17995 PF00176 SNF2 family N-terminal domain N288_17995 PF00271 Helicase conserved C-terminal domain N288_18000 PF11079 Bacterial protein YqhG of unknown function N288_18010 PF14038 YqzE-like protein N288_18015 PF01202 Shikimate kinase N288_18040 PF07963 Prokaryotic N-terminal methylation motif N288_18045 PF00482 Type II secretion system (T2SS), protein F N288_18050 PF00437 Type II/IV secretion system protein N288_18060 PF03960 ArsC family N288_18070 PF11117 Protein of unknown function (DUF2626) N288_18080 PF00753 Metallo-beta-lactamase superfamily N288_18095 PF01910 Thiamine-binding protein N288_18105 PF00246 Zinc carboxypeptidase N288_18105 PF01476 LysM domain N288_18110 PF00884 Sulfatase N288_18120 PF00480 ROK family N288_18135 PF03323 Bacillus/Clostridium GerA spore germination protein N288_18140 PF01694 Rhomboid family N288_18155 PF01812 5-formyltetrahydrofolate cyclo-ligase family N288_18160 PF00471 Ribosomal protein L33 N288_18170 PF13439 Glycosyltransferase Family 4 N288_18170 PF00534 Glycosyl transferases group 1 N288_18190 PF01895 PhoU domain N288_18195 PF00005 ABC transporter N288_18200 PF00528 Binding-protein-dependent transport system inner membrane component N288_18205 PF00528 Binding-protein-dependent transport system inner membrane component N288_18210 PF12849 PBP superfamily domain N288_18225 PF07690 Major Facilitator Superfamily N288_18230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N288_18230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N288_18235 PF04306 Protein of unknown function (DUF456) N288_18240 PF02690 Na+/Pi-cotransporter N288_18245 PF06691 Protein of unknown function (DUF1189) N288_18250 PF02743 Cache domain N288_18250 PF00672 HAMP domain N288_18250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_18260 PF04551 GcpE protein N288_18270 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) N288_18275 PF01475 Ferric uptake regulator family N288_18280 PF00950 ABC 3 transport family N288_18285 PF00005 ABC transporter N288_18290 PF11116 Protein of unknown function (DUF2624) N288_18295 PF01261 Xylose isomerase-like TIM barrel N288_18300 PF00271 Helicase conserved C-terminal domain N288_18300 PF00270 DEAD/DEAH box helicase N288_18315 PF02401 LytB protein N288_18320 PF01784 NIF3 (NGG1p interacting factor 3) N288_18325 PF04816 tRNA (adenine(22)-N(1))-methyltransferase N288_18330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N288_18335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_18335 PF02770 Acyl-CoA dehydrogenase, middle domain N288_18335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_18345 PF00140 Sigma-70 factor, region 1.2 N288_18345 PF03979 Sigma-70 factor, region 1.1 N288_18345 PF04539 Sigma-70 region 3 N288_18345 PF04545 Sigma-70, region 4 N288_18345 PF04542 Sigma-70 region 2 N288_18350 PF01807 CHC2 zinc finger N288_18350 PF10410 DnaB-helicase binding domain of primase N288_18350 PF08275 DNA primase catalytic core, N-terminal domain N288_18355 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 N288_18360 PF03618 Kinase/pyrophosphorylase N288_18365 PF08279 HTH domain N288_18365 PF00571 CBS domain N288_18370 PF02092 Glycyl-tRNA synthetase beta subunit N288_18375 PF02091 Glycyl-tRNA synthetase alpha subunit N288_18380 PF11967 Recombination protein O N terminal N288_18380 PF02565 Recombination protein O C terminal N288_18385 PF14006 YqzL-like protein N288_18390 PF01926 50S ribosome-binding GTPase N288_18390 PF07650 KH domain N288_18395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N288_18400 PF01219 Prokaryotic diacylglycerol kinase N288_18405 PF02130 Uncharacterized protein family UPF0054 N288_18410 PF01966 HD domain N288_18410 PF07697 7TM-HD extracellular N288_18410 PF07698 7TM receptor with intracellular HD hydrolase N288_18415 PF02562 PhoH-like protein N288_18420 PF06898 Putative stage IV sporulation protein YqfD N288_18425 PF07873 YabP family N288_18435 PF12127 SigmaW regulon antibacterial N288_18440 PF01972 Serine dehydrogenase proteinase N288_18440 PF01957 NfeD-like C-terminal, partner-binding N288_18445 PF09424 Yqey-like protein N288_18450 PF01165 Ribosomal protein S21 N288_18455 PF02690 Na+/Pi-cotransporter N288_18460 PF01791 DeoC/LacD family aldolase N288_18465 PF04055 Radical SAM superfamily N288_18465 PF01938 TRAM domain N288_18465 PF00919 Uncharacterized protein family UPF0004 N288_18470 PF04452 RNA methyltransferase N288_18480 PF00684 DnaJ central domain N288_18480 PF01556 DnaJ C terminal domain N288_18480 PF00226 DnaJ domain N288_18485 PF00012 Hsp70 protein N288_18490 PF01025 GrpE N288_18500 PF04055 Radical SAM superfamily N288_18500 PF06969 HemN C-terminal domain N288_18505 PF06421 GTP-binding protein LepA C-terminus N288_18505 PF03144 Elongation factor Tu domain 2 N288_18505 PF00679 Elongation factor G C-terminus N288_18505 PF00009 Elongation factor Tu GTP binding domain N288_18515 PF07454 Stage II sporulation protein P (SpoIIP) N288_18520 PF03418 Germination protease N288_18525 PF01649 Ribosomal protein S20 N288_18530 PF06144 DNA polymerase III, delta subunit N288_18535 PF14141 YqzM-like protein N288_18540 PF03772 Competence protein N288_18540 PF13567 Domain of unknown function (DUF4131) N288_18540 PF00753 Metallo-beta-lactamase superfamily N288_18545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N288_18550 PF10531 SLBB domain N288_18555 PF14748 Pyrroline-5-carboxylate reductase dimerisation N288_18555 PF03807 NADP oxidoreductase coenzyme F420-dependent N288_18560 PF13649 Methyltransferase domain N288_18570 PF01966 HD domain N288_18575 PF01467 Cytidylyltransferase-like N288_18580 PF01985 CRS1 / YhbY (CRM) domain N288_18585 PF08501 Shikimate dehydrogenase substrate binding domain N288_18585 PF01488 Shikimate / quinate 5-dehydrogenase N288_18585 PF18317 Shikimate 5'-dehydrogenase C-terminal domain N288_18590 PF01926 50S ribosome-binding GTPase N288_18600 PF08970 Sporulation inhibitor A N288_18605 PF02666 Phosphatidylserine decarboxylase N288_18610 PF01066 CDP-alcohol phosphatidyltransferase N288_18615 PF08439 Oligopeptidase F N288_18615 PF01432 Peptidase family M3 N288_18635 PF04542 Sigma-70 region 2 N288_18635 PF04545 Sigma-70, region 4 N288_18655 PF01053 Cys/Met metabolism PLP-dependent enzyme N288_18660 PF00291 Pyridoxal-phosphate dependent enzyme N288_18665 PF01048 Phosphorylase superfamily N288_18670 PF13649 Methyltransferase domain N288_18675 PF10750 Protein of unknown function (DUF2536) N288_18685 PF03717 Penicillin-binding Protein dimerisation domain N288_18685 PF00905 Penicillin binding protein transpeptidase domain N288_18690 PF03449 Transcription elongation factor, N-terminal N288_18690 PF01272 Transcription elongation factor, GreA/GreB, C-term N288_18695 PF00485 Phosphoribulokinase / Uridine kinase family N288_18715 PF02618 YceG-like family N288_18720 PF06949 Protein of unknown function (DUF1292) N288_18725 PF03652 Holliday junction resolvase N288_18730 PF06135 IreB regulatory phosphoprotein N288_18740 PF01594 AI-2E family transporter N288_18765 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain N288_18765 PF14490 Helix-hairpin-helix containing domain N288_18765 PF13538 UvrD-like helicase C-terminal domain N288_18780 PF00266 Aminotransferase class-V N288_18785 PF02082 Transcriptional regulator N288_18795 PF05496 Holliday junction DNA helicase RuvB P-loop domain N288_18795 PF16193 AAA C-terminal domain N288_18795 PF12002 MgsA AAA+ ATPase C terminal N288_18805 PF00899 ThiF family N288_18810 PF02938 GAD domain N288_18810 PF00152 tRNA synthetases class II (D, K and N) N288_18810 PF01336 OB-fold nucleic acid binding domain N288_18815 PF13393 Histidyl-tRNA synthetase N288_18815 PF03129 Anticodon binding domain N288_18825 PF08239 Bacterial SH3 domain N288_18825 PF01520 N-acetylmuramoyl-L-alanine amidase N288_18830 PF02580 D-Tyr-tRNA(Tyr) deacylase N288_18835 PF13291 ACT domain N288_18835 PF02824 TGS domain N288_18835 PF04607 Region found in RelA / SpoT proteins N288_18840 PF00156 Phosphoribosyl transferase domain N288_18845 PF01368 DHH family N288_18845 PF02272 DHHA1 domain N288_18845 PF10141 Single-strand DNA-specific exonuclease, C terminal domain N288_18845 PF17768 RecJ OB domain N288_18850 PF06305 Lipopolysaccharide assembly protein A domain N288_18855 PF16916 Dimerisation domain of Zinc Transporter N288_18855 PF01545 Cation efflux family N288_18860 PF07549 SecD/SecF GG Motif N288_18860 PF02355 Protein export membrane protein N288_18870 PF14667 Polysaccharide biosynthesis C-terminal domain N288_18870 PF01943 Polysaccharide biosynthesis protein N288_18875 PF04239 Protein of unknown function (DUF421) N288_18880 PF12670 Protein of unknown function (DUF3792) N288_18885 PF02699 Preprotein translocase subunit N288_18890 PF01702 Queuine tRNA-ribosyltransferase N288_18895 PF02547 Queuosine biosynthesis protein N288_18905 PF01330 RuvA N terminal domain N288_18905 PF07499 RuvA, C-terminal domain N288_18915 PF08977 Bypass of Forespore C, N terminal N288_18915 PF08955 BofC C-terminal domain N288_18940 PF01476 LysM domain N288_18945 PF02445 Quinolinate synthetase A protein N288_18950 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N288_18950 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N288_18955 PF00890 FAD binding domain N288_18955 PF02910 Fumarate reductase flavoprotein C-term N288_18960 PF00266 Aminotransferase class-V N288_18965 PF02829 3H domain N288_18965 PF08279 HTH domain N288_18970 PF01842 ACT domain N288_18970 PF00800 Prephenate dehydratase N288_18975 PF01842 ACT domain N288_18980 PF09269 Domain of unknown function (DUF1967) N288_18980 PF01018 GTP1/OBG N288_18980 PF01926 50S ribosome-binding GTPase N288_18985 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain N288_18985 PF14682 Sporulation initiation phospho-transferase B, C-terminal N288_18990 PF01016 Ribosomal L27 protein N288_18995 PF04327 Cysteine protease Prp N288_19000 PF00829 Ribosomal prokaryotic L21 protein N288_19005 PF00575 S1 RNA binding domain N288_19005 PF10150 Ribonuclease E/G family N288_19010 PF02163 Peptidase family M50 N288_19015 PF01551 Peptidase family M23 N288_19025 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain N288_19030 PF03775 Septum formation inhibitor MinC, C-terminal domain N288_19045 PF04085 rod shape-determining protein MreC N288_19055 PF04002 RadC-like JAB domain N288_19060 PF02545 Maf-like protein N288_19090 PF01478 Type IV leader peptidase family N288_19090 PF06750 Bacterial Peptidase A24 N-terminal domain N288_19095 PF00114 Pilin (bacterial filament) N288_19095 PF07963 Prokaryotic N-terminal methylation motif N288_19100 PF00482 Type II secretion system (T2SS), protein F N288_19105 PF00437 Type II/IV secretion system protein N288_19110 PF00437 Type II/IV secretion system protein N288_19150 PF00072 Response regulator receiver domain N288_19150 PF00990 Diguanylate cyclase, GGDEF domain N288_19155 PF08245 Mur ligase middle domain N288_19155 PF02875 Mur ligase family, glutamate ligase domain N288_19160 PF08264 Anticodon-binding domain of tRNA N288_19160 PF00133 tRNA synthetases class I (I, L, M and V) N288_19160 PF10458 Valyl tRNA synthetase tRNA binding arm N288_19175 PF01476 LysM domain N288_19180 PF00202 Aminotransferase class-III N288_19185 PF00490 Delta-aminolevulinic acid dehydratase N288_19195 PF03900 Porphobilinogen deaminase, C-terminal domain N288_19195 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain N288_19200 PF01578 Cytochrome C assembly protein N288_19205 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain N288_19205 PF01488 Shikimate / quinate 5-dehydrogenase N288_19205 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain N288_19215 PF00005 ABC transporter N288_19220 PF00528 Binding-protein-dependent transport system inner membrane component N288_19225 PF00497 Bacterial extracellular solute-binding proteins, family 3 N288_19230 PF01926 50S ribosome-binding GTPase N288_19235 PF02190 ATP-dependent protease La (LON) substrate-binding domain N288_19235 PF05362 Lon protease (S16) C-terminal proteolytic domain N288_19235 PF00004 ATPase family associated with various cellular activities (AAA) N288_19240 PF00004 ATPase family associated with various cellular activities (AAA) N288_19240 PF05362 Lon protease (S16) C-terminal proteolytic domain N288_19245 PF10431 C-terminal, D2-small domain, of ClpB protein N288_19245 PF06689 ClpX C4-type zinc finger N288_19245 PF07724 AAA domain (Cdc48 subfamily) N288_19250 PF05698 Bacterial trigger factor protein (TF) C-terminus N288_19250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N288_19250 PF05697 Bacterial trigger factor protein (TF) N288_19260 PF00694 Aconitase C-terminal domain N288_19265 PF00330 Aconitase family (aconitate hydratase) N288_19270 PF00180 Isocitrate/isopropylmalate dehydrogenase N288_19275 PF08502 LeuA allosteric (dimerisation) domain N288_19275 PF00682 HMGL-like N288_19280 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain N288_19280 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain N288_19285 PF01842 ACT domain N288_19285 PF10369 Small subunit of acetolactate synthase N288_19290 PF00205 Thiamine pyrophosphate enzyme, central domain N288_19290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N288_19290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N288_19295 PF01063 Amino-transferase class IV N288_19305 PF12850 Calcineurin-like phosphoesterase superfamily domain N288_19310 PF01725 Ham1 family N288_19315 PF01138 3' exoribonuclease family, domain 1 N288_19315 PF03725 3' exoribonuclease family, domain 2 N288_19320 PF10646 Sporulation and spore germination N288_19325 PF00570 HRDC domain N288_19325 PF00270 DEAD/DEAH box helicase N288_19325 PF09382 RQC domain N288_19325 PF16124 RecQ zinc-binding N288_19325 PF00271 Helicase conserved C-terminal domain N288_19330 PF01177 Asp/Glu/Hydantoin racemase N288_19335 PF01047 MarR family N288_19340 PF00196 Bacterial regulatory proteins, luxR family N288_19345 PF03061 Thioesterase superfamily N288_19350 PF13183 4Fe-4S dicluster domain N288_19350 PF13085 2Fe-2S iron-sulfur cluster binding domain N288_19355 PF00890 FAD binding domain N288_19355 PF02910 Fumarate reductase flavoprotein C-term N288_19360 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N288_19370 PF10702 Protein of unknown function (DUF2507) N288_19375 PF13840 ACT domain N288_19375 PF00696 Amino acid kinase family N288_19380 PF08459 UvrC Helix-hairpin-helix N-terminal N288_19380 PF02151 UvrB/uvrC motif N288_19380 PF01541 GIY-YIG catalytic domain N288_19390 PF00085 Thioredoxin N288_19395 PF00766 Electron transfer flavoprotein FAD-binding domain N288_19395 PF01012 Electron transfer flavoprotein domain N288_19400 PF01012 Electron transfer flavoprotein domain N288_19405 PF00378 Enoyl-CoA hydratase/isomerase N288_19410 PF08359 YsiA-like protein, C-terminal region N288_19410 PF00440 Bacterial regulatory proteins, tetR family N288_19415 PF00501 AMP-binding enzyme N288_19415 PF13193 AMP-binding enzyme C-terminal domain N288_19420 PF03994 Domain of Unknown Function (DUF350) N288_19425 PF01713 Smr domain N288_19425 PF00488 MutS domain V N288_19430 PF14791 DNA polymerase beta thumb N288_19430 PF02811 PHP domain N288_19430 PF14716 Helix-hairpin-helix domain N288_19435 PF02674 Colicin V production protein N288_19440 PF05164 Cell division protein ZapA N288_19445 PF01351 Ribonuclease HII N288_19445 PF11858 Domain of unknown function (DUF3378) N288_19450 PF03483 B3/4 domain N288_19450 PF03484 tRNA synthetase B5 domain N288_19450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain N288_19450 PF03147 Ferredoxin-fold anticodon binding domain N288_19450 PF01588 Putative tRNA binding domain N288_19455 PF01409 tRNA synthetases class II core domain (F) N288_19455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain N288_19460 PF00588 SpoU rRNA Methylase family N288_19460 PF08032 RNA 2'-O ribose methyltransferase substrate binding N288_19465 PF14098 Small, acid-soluble spore protein I N288_19470 PF05343 M42 glutamyl aminopeptidase N288_19490 PF06961 Protein of unknown function (DUF1294) N288_19495 PF00453 Ribosomal protein L20 N288_19500 PF01632 Ribosomal protein L35 N288_19505 PF05198 Translation initiation factor IF-3, N-terminal domain N288_19505 PF00707 Translation initiation factor IF-3, C-terminal domain N288_19510 PF03129 Anticodon binding domain N288_19510 PF02824 TGS domain N288_19510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N288_19510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N288_19515 PF08812 YtxC-like family N288_19520 PF07319 Primosomal protein DnaI N-terminus N288_19520 PF01695 IstB-like ATP binding protein N288_19525 PF07261 Replication initiation and membrane attachment N288_19530 PF03477 ATP cone domain N288_19540 PF02675 S-adenosylmethionine decarboxylase N288_19545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N288_19545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N288_19550 PF01121 Dephospho-CoA kinase N288_19555 PF02659 Putative manganese efflux pump N288_19560 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain N288_19560 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain N288_19560 PF06827 Zinc finger found in FPG and IleRS N288_19565 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N288_19565 PF00476 DNA polymerase family A N288_19565 PF01367 5'-3' exonuclease, C-terminal SAM fold N288_19570 PF01145 SPFH domain / Band 7 family N288_19575 PF01145 SPFH domain / Band 7 family N288_19575 PF12221 Bacterial membrane protein N terminal N288_19580 PF16736 Single Cache-like N288_19580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_19580 PF00512 His Kinase A (phospho-acceptor) domain N288_19580 PF00989 PAS fold N288_19585 PF00486 Transcriptional regulatory protein, C terminal N288_19585 PF00072 Response regulator receiver domain N288_19595 PF00056 lactate/malate dehydrogenase, NAD binding domain N288_19595 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain N288_19600 PF00180 Isocitrate/isopropylmalate dehydrogenase N288_19605 PF00285 Citrate synthase, C-terminal domain N288_19610 PF04284 Protein of unknown function (DUF441) N288_19620 PF01594 AI-2E family transporter N288_19625 PF04186 FxsA cytoplasmic membrane protein N288_19630 PF00224 Pyruvate kinase, barrel domain N288_19630 PF00391 PEP-utilising enzyme, mobile domain N288_19630 PF02887 Pyruvate kinase, alpha/beta domain N288_19640 PF00365 Phosphofructokinase N288_19645 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit N288_19650 PF01039 Carboxyl transferase domain N288_19650 PF17848 Acetyl-coA carboxylase zinc finger domain N288_19655 PF00392 Bacterial regulatory proteins, gntR family N288_19655 PF07729 FCD domain N288_19660 PF00390 Malic enzyme, N-terminal domain N288_19660 PF03949 Malic enzyme, NAD binding domain N288_19665 PF07733 Bacterial DNA polymerase III alpha NTPase domain N288_19665 PF01336 OB-fold nucleic acid binding domain N288_19665 PF02811 PHP domain N288_19665 PF14579 Helix-hairpin-helix motif N288_19665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N288_19670 PF14034 Sporulation protein YtrH N288_19680 PF02272 DHHA1 domain N288_19680 PF01368 DHH family N288_19685 PF14007 YtpI-like protein N288_19690 PF00571 CBS domain N288_19690 PF07085 DRTGG domain N288_19690 PF00392 Bacterial regulatory proteins, gntR family N288_19690 PF03061 Thioesterase superfamily N288_19705 PF01321 Creatinase/Prolidase N-terminal domain N288_19705 PF00557 Metallopeptidase family M24 N288_19710 PF05222 Alanine dehydrogenase/PNT, N-terminal domain N288_19710 PF01262 Alanine dehydrogenase/PNT, C-terminal domain N288_19725 PF00582 Universal stress protein family N288_19730 PF00206 Lyase N288_19730 PF14698 Argininosuccinate lyase C-terminal N288_19735 PF00764 Arginosuccinate synthase N288_19745 PF00994 Probable molybdopterin binding domain N288_19755 PF00871 Acetokinase family N288_19760 PF02384 N-6 DNA Methylase N288_19765 PF08534 Redoxin N288_19770 PF09579 Sporulation protein YtfJ (Spore_YtfJ) N288_19780 PF06271 RDD family N288_19785 PF01343 Peptidase family S49 N288_19790 PF01513 ATP-NAD kinase N288_19795 PF00892 EamA-like transporter family N288_19800 PF07969 Amidohydrolase family N288_19805 PF00501 AMP-binding enzyme N288_19805 PF13193 AMP-binding enzyme C-terminal domain N288_19810 PF00269 Small, acid-soluble spore proteins, alpha/beta type N288_19815 PF02568 Thiamine biosynthesis protein (ThiI) N288_19815 PF02926 THUMP domain N288_19820 PF00266 Aminotransferase class-V N288_19825 PF05525 Branched-chain amino acid transport protein N288_19830 PF06160 Septation ring formation regulator, EzrA N288_19835 PF02811 PHP domain N288_19840 PF00440 Bacterial regulatory proteins, tetR family N288_19845 PF13185 GAF domain N288_19855 PF01053 Cys/Met metabolism PLP-dependent enzyme N288_19860 PF00990 Diguanylate cyclase, GGDEF domain N288_19870 PF00163 Ribosomal protein S4/S9 N-terminal domain N288_19870 PF01479 S4 domain N288_19875 PF00579 tRNA synthetases class I (W and Y) N288_19875 PF01479 S4 domain N288_19880 PF00905 Penicillin binding protein transpeptidase domain N288_19880 PF00912 Transglycosylase N288_19885 PF00501 AMP-binding enzyme N288_19885 PF13193 AMP-binding enzyme C-terminal domain N288_19890 PF00583 Acetyltransferase (GNAT) family N288_19895 PF00571 CBS domain N288_19900 PF00850 Histone deacetylase domain N288_19910 PF13677 Membrane MotB of proton-channel complex MotA/MotB N288_19910 PF00691 OmpA family N288_19915 PF01618 MotA/TolQ/ExbB proton channel family N288_19920 PF00356 Bacterial regulatory proteins, lacI family N288_19925 PF01817 Chorismate mutase type II N288_19925 PF00793 DAHP synthetase I family N288_19930 PF02491 SHS2 domain inserted in FTSA N288_19935 PF11009 Protein of unknown function (DUF2847) N288_19940 PF12732 YtxH-like protein N288_19945 PF06103 Bacterial protein of unknown function (DUF948) N288_19950 PF02073 Thermophilic metalloprotease (M29) N288_19955 PF08245 Mur ligase middle domain N288_19955 PF01225 Mur ligase family, catalytic domain N288_19955 PF02875 Mur ligase family, glutamate ligase domain N288_19965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain N288_19965 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N288_19970 PF01580 FtsK/SpoIIIE family N288_19970 PF17854 FtsK alpha domain N288_19970 PF09397 Ftsk gamma domain N288_19975 PF07285 Protein of unknown function (DUF1444) N288_19980 PF00085 Thioredoxin N288_19995 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ N288_20000 PF01931 Protein of unknown function DUF84 N288_20005 PF05343 M42 glutamyl aminopeptidase N288_20010 PF03413 Peptidase propeptide and YPEB domain N288_20015 PF00753 Metallo-beta-lactamase superfamily N288_20020 PF02390 Putative methyltransferase N288_20035 PF14165 YtzH-like protein N288_20040 PF01636 Phosphotransferase enzyme family N288_20045 PF17999 Pullulanase N1-terminal domain N288_20045 PF00128 Alpha amylase, catalytic domain N288_20045 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N288_20055 PF02834 LigT like Phosphoesterase N288_20065 PF00291 Pyridoxal-phosphate dependent enzyme N288_20070 PF01063 Amino-transferase class IV N288_20075 PF01546 Peptidase family M20/M25/M40 N288_20080 PF05975 Bacterial ABC transporter protein EcsB N288_20085 PF00005 ABC transporter N288_20100 PF01479 S4 domain N288_20100 PF00849 RNA pseudouridylate synthase N288_20110 PF14667 Polysaccharide biosynthesis C-terminal domain N288_20110 PF01943 Polysaccharide biosynthesis protein N288_20120 PF10957 Sporulation protein Cse60 N288_20125 PF00581 Rhodanese-like domain N288_20130 PF08264 Anticodon-binding domain of tRNA N288_20130 PF09334 tRNA synthetases class I (M) N288_20130 PF13603 Leucyl-tRNA synthetase, Domain 2 N288_20130 PF00133 tRNA synthetases class I (I, L, M and V) N288_20150 PF00989 PAS fold N288_20150 PF00158 Sigma-54 interaction domain N288_20150 PF02954 Bacterial regulatory protein, Fis family N288_20160 PF07690 Major Facilitator Superfamily N288_20165 PF12697 Alpha/beta hydrolase family N288_20175 PF10732 Protein of unknown function (DUF2524) N288_20185 PF04055 Radical SAM superfamily N288_20185 PF16199 Radical_SAM C-terminal domain N288_20190 PF06962 Putative rRNA methylase N288_20195 PF10776 Protein of unknown function (DUF2600) N288_20200 PF12146 Serine aminopeptidase, S33 N288_20205 PF00132 Bacterial transferase hexapeptide (six repeats) N288_20210 PF13529 Peptidase_C39 like family N288_20215 PF13537 Glutamine amidotransferase domain N288_20215 PF00733 Asparagine synthase N288_20220 PF02773 S-adenosylmethionine synthetase, C-terminal domain N288_20220 PF02772 S-adenosylmethionine synthetase, central domain N288_20220 PF00438 S-adenosylmethionine synthetase, N-terminal domain N288_20240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain N288_20240 PF02790 Cytochrome C oxidase subunit II, transmembrane domain N288_20245 PF00115 Cytochrome C and Quinol oxidase polypeptide I N288_20250 PF00510 Cytochrome c oxidase subunit III N288_20255 PF03626 Prokaryotic Cytochrome C oxidase subunit IV N288_20270 PF01293 Phosphoenolpyruvate carboxykinase N288_20280 PF03466 LysR substrate binding domain N288_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N288_20285 PF00285 Citrate synthase, C-terminal domain N288_20290 PF10763 Protein of unknown function (DUF2584) N288_20295 PF00326 Prolyl oligopeptidase family N288_20305 PF00005 ABC transporter N288_20310 PF00528 Binding-protein-dependent transport system inner membrane component N288_20315 PF00293 NUDIX domain N288_20340 PF00210 Ferritin-like domain N288_20350 PF13396 Phospholipase_D-nuclease N-terminal N288_20350 PF13091 PLD-like domain N288_20355 PF02664 S-Ribosylhomocysteinase (LuxS) N288_20360 PF01809 Putative membrane protein insertion efficiency factor N288_20365 PF00484 Carbonic anhydrase N288_20370 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment N288_20370 PF01297 Zinc-uptake complex component A periplasmic N288_20375 PF01654 Cytochrome bd terminal oxidase subunit I N288_20380 PF02322 Cytochrome bd terminal oxidase subunit II N288_20385 PF07561 Domain of Unknown Function (DUF1540) N288_20395 PF13378 Enolase C-terminal domain-like N288_20395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N288_20400 PF00501 AMP-binding enzyme N288_20400 PF13193 AMP-binding enzyme C-terminal domain N288_20405 PF00378 Enoyl-CoA hydratase/isomerase N288_20410 PF00561 alpha/beta hydrolase fold N288_20415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N288_20415 PF16582 Middle domain of thiamine pyrophosphate N288_20415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N288_20420 PF00425 chorismate binding enzyme N288_20425 PF01040 UbiA prenyltransferase family N288_20430 PF01258 Prokaryotic dksA/traR C4-type zinc finger N288_20435 PF00343 Carbohydrate phosphorylase N288_20440 PF00534 Glycosyl transferases group 1 N288_20440 PF08323 Starch synthase catalytic domain N288_20445 PF00483 Nucleotidyl transferase N288_20455 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N288_20455 PF00128 Alpha amylase, catalytic domain N288_20455 PF02806 Alpha amylase, C-terminal all-beta domain N288_20595 PF13302 Acetyltransferase (GNAT) domain N288_20605 PF02308 MgtC family N288_20620 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_20620 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_20625 PF02898 Nitric oxide synthase, oxygenase domain N288_20630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N288_20630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_20645 PF07885 Ion channel N288_20645 PF02254 TrkA-N domain N288_20650 PF08868 YugN-like family N288_20660 PF00342 Phosphoglucose isomerase N288_20665 PF00465 Iron-containing alcohol dehydrogenase N288_20670 PF04070 Domain of unknown function (DUF378) N288_20675 PF00202 Aminotransferase class-III N288_20680 PF00158 Sigma-54 interaction domain N288_20680 PF13426 PAS domain N288_20680 PF02954 Bacterial regulatory protein, Fis family N288_20685 PF00575 S1 RNA binding domain N288_20695 PF00155 Aminotransferase class I and II N288_20700 PF01037 Lrp/AsnC ligand binding domain N288_20710 PF00561 alpha/beta hydrolase fold N288_20710 PF08386 TAP-like protein N288_20720 PF00155 Aminotransferase class I and II N288_20730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N288_20735 PF08810 Kinase associated protein B N288_20740 PF00929 Exonuclease N288_20745 PF00912 Transglycosylase N288_20745 PF00905 Penicillin binding protein transpeptidase domain N288_20750 PF17328 Family of unknown function (DUF5366) N288_20770 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter N288_20775 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L N288_20780 PF00361 Proton-conducting membrane transporter N288_20785 PF01899 Na+/H+ ion antiporter subunit N288_20790 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) N288_20795 PF03334 Na+/H+ antiporter subunit N288_20800 PF03061 Thioesterase superfamily N288_20860 PF00174 Oxidoreductase molybdopterin binding domain N288_20865 PF13726 Na+-H+ antiporter family N288_20865 PF03553 Na+/H+ antiporter family N288_20870 PF02789 Cytosol aminopeptidase family, N-terminal domain N288_20870 PF00883 Cytosol aminopeptidase family, catalytic domain N288_20880 PF02681 Divergent PAP2 family N288_20885 PF01497 Periplasmic binding protein N288_20890 PF06725 3D domain N288_20895 PF14068 Putative membrane protein N288_20900 PF17302 Family of unknown function (DUF5351) N288_20905 PF00293 NUDIX domain N288_20910 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_20915 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_20940 PF01521 Iron-sulphur cluster biosynthesis N288_20950 PF07293 Protein of unknown function (DUF1450) N288_20955 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_20960 PF07315 Protein of unknown function (DUF1462) N288_20965 PF01106 NifU-like domain N288_20970 PF08544 GHMP kinases C terminal N288_20970 PF00288 GHMP kinases N terminal domain N288_20975 PF00291 Pyridoxal-phosphate dependent enzyme N288_20980 PF03447 Homoserine dehydrogenase, NAD binding domain N288_20980 PF00742 Homoserine dehydrogenase N288_20980 PF01842 ACT domain N288_20990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N288_20990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N288_21000 PF04608 Phosphatidylglycerophosphatase A N288_21010 PF05698 Bacterial trigger factor protein (TF) C-terminus N288_21015 PF13180 PDZ domain N288_21020 PF13344 Haloacid dehalogenase-like hydrolase N288_21025 PF01934 Protein of unknown function DUF86 N288_21030 PF00990 Diguanylate cyclase, GGDEF domain N288_21030 PF00563 EAL domain N288_21030 PF03707 Bacterial signalling protein N terminal repeat N288_21030 PF13188 PAS domain N288_21045 PF06265 Protein of unknown function (DUF1027) N288_21050 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) N288_21055 PF04055 Radical SAM superfamily N288_21055 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family N288_21060 PF01551 Peptidase family M23 N288_21070 PF00209 Sodium:neurotransmitter symporter family N288_21075 PF03553 Na+/H+ antiporter family N288_21085 PF09560 Sporulation protein YunB (Spo_YunB) N288_21090 PF01966 HD domain N288_21090 PF11871 Domain of unknown function (DUF3391) N288_21095 PF08827 Domain of unknown function (DUF1805) N288_21100 PF02872 5'-nucleotidase, C-terminal domain N288_21105 PF01904 Protein of unknown function DUF72 N288_21110 PF01458 Uncharacterized protein family (UPF0051) N288_21115 PF01592 NifU-like N terminal domain N288_21120 PF00266 Aminotransferase class-V N288_21125 PF01458 Uncharacterized protein family (UPF0051) N288_21130 PF00005 ABC transporter N288_21140 PF02627 Carboxymuconolactone decarboxylase family N288_21145 PF03180 NLPA lipoprotein N288_21150 PF00528 Binding-protein-dependent transport system inner membrane component N288_21155 PF00005 ABC transporter N288_21155 PF09383 NIL domain N288_21165 PF01053 Cys/Met metabolism PLP-dependent enzyme N288_21175 PF00085 Thioredoxin N288_21180 PF01751 Toprim domain N288_21195 PF01597 Glycine cleavage H-protein N288_21200 PF03960 ArsC family N288_21205 PF02770 Acyl-CoA dehydrogenase, middle domain N288_21205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_21205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_21210 PF02803 Thiolase, C-terminal domain N288_21210 PF00108 Thiolase, N-terminal domain N288_21215 PF00378 Enoyl-CoA hydratase/isomerase N288_21215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N288_21215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N288_21220 PF14115 YuzL-like protein N288_21230 PF00872 Transposase, Mutator family N288_21235 PF01619 Proline dehydrogenase N288_21240 PF10835 Protein of unknown function (DUF2573) N288_21250 PF00005 ABC transporter N288_21255 PF01032 FecCD transport family N288_21260 PF01032 FecCD transport family N288_21265 PF01497 Periplasmic binding protein N288_21270 PF03323 Bacillus/Clostridium GerA spore germination protein N288_21275 PF03845 Spore germination protein N288_21280 PF05504 Spore germination B3/ GerAC like, C-terminal N288_21285 PF01098 Cell cycle protein N288_21345 PF00929 Exonuclease N288_21345 PF02811 PHP domain N288_21345 PF01336 OB-fold nucleic acid binding domain N288_21345 PF14579 Helix-hairpin-helix motif N288_21345 PF07733 Bacterial DNA polymerase III alpha NTPase domain N288_21345 PF11490 DNA polymerase III polC-type N-terminus II N288_21345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N288_21355 PF00909 Ammonium Transporter Family N288_21360 PF07849 Protein of unknown function (DUF1641) N288_21365 PF12838 4Fe-4S dicluster domain N288_21365 PF01568 Molydopterin dinucleotide binding domain N288_21365 PF00384 Molybdopterin oxidoreductase N288_21365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N288_21365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N288_21380 PF13529 Peptidase_C39 like family N288_21390 PF01638 HxlR-like helix-turn-helix N288_21395 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N288_21400 PF01380 SIS domain N288_21405 PF00106 short chain dehydrogenase N288_21415 PF01925 Sulfite exporter TauE/SafE N288_21420 PF00581 Rhodanese-like domain N288_21420 PF00753 Metallo-beta-lactamase superfamily N288_21425 PF01206 Sulfurtransferase TusA N288_21425 PF00581 Rhodanese-like domain N288_21430 PF00581 Rhodanese-like domain N288_21435 PF13686 DsrE/DsrF/DrsH-like family N288_21440 PF01206 Sulfurtransferase TusA N288_21445 PF02583 Metal-sensitive transcriptional repressor N288_21455 PF00999 Sodium/hydrogen exchanger family N288_21470 PF13732 Domain of unknown function (DUF4162) N288_21470 PF00005 ABC transporter N288_21475 PF00005 ABC transporter N288_21490 PF02743 Cache domain N288_21490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_21490 PF00672 HAMP domain N288_21495 PF03176 MMPL family N288_21500 PF01047 MarR family N288_21505 PF00528 Binding-protein-dependent transport system inner membrane component N288_21510 PF00005 ABC transporter N288_21510 PF00571 CBS domain N288_21515 PF00990 Diguanylate cyclase, GGDEF domain N288_21525 PF00528 Binding-protein-dependent transport system inner membrane component N288_21530 PF00005 ABC transporter N288_21530 PF00571 CBS domain N288_21540 PF00085 Thioredoxin N288_21545 PF03358 NADPH-dependent FMN reductase N288_21560 PF01668 SmpB protein N288_21565 PF17876 Cold shock domain N288_21565 PF00575 S1 RNA binding domain N288_21565 PF08206 Ribonuclease B OB domain N288_21565 PF00773 RNB domain N288_21570 PF12146 Serine aminopeptidase, S33 N288_21575 PF03840 Preprotein translocase SecG subunit N288_21585 PF03952 Enolase, N-terminal domain N288_21585 PF00113 Enolase, C-terminal TIM barrel domain N288_21590 PF06415 BPG-independent PGAM N-terminus (iPGM_N) N288_21590 PF01676 Metalloenzyme superfamily N288_21595 PF00121 Triosephosphate isomerase N288_21600 PF00162 Phosphoglycerate kinase N288_21605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N288_21605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N288_21610 PF04198 Putative sugar-binding domain N288_21620 PF00309 Sigma-54 factor, Activator interacting domain (AID) N288_21620 PF04963 Sigma-54 factor, core binding domain N288_21620 PF04552 Sigma-54, DNA binding domain N288_21640 PF00574 Clp protease N288_21645 PF00381 PTS HPr component phosphorylation site N288_21650 PF14527 WhiA LAGLIDADG-like domain N288_21650 PF02650 WhiA C-terminal HTH domain N288_21650 PF10298 WhiA N-terminal LAGLIDADG-like domain N288_21655 PF01933 Uncharacterised protein family UPF0052 N288_21660 PF03668 P-loop ATPase protein family N288_21665 PF00293 NUDIX domain N288_21670 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_21680 PF01502 Phosphoribosyl-AMP cyclohydrolase N288_21680 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase N288_21685 PF00977 Histidine biosynthesis protein N288_21690 PF00977 Histidine biosynthesis protein N288_21695 PF00117 Glutamine amidotransferase class-I N288_21700 PF00475 Imidazoleglycerol-phosphate dehydratase N288_21705 PF00815 Histidinol dehydrogenase N288_21710 PF01634 ATP phosphoribosyltransferase N288_21715 PF13393 Histidyl-tRNA synthetase N288_21720 PF14602 Hexapeptide repeat of succinyl-transferase N288_21725 PF13419 Haloacid dehalogenase-like hydrolase N288_21730 PF07670 Nucleoside recognition N288_21735 PF01790 Prolipoprotein diacylglyceryl transferase N288_21740 PF02603 HPr Serine kinase N terminus N288_21740 PF07475 HPr Serine kinase C-terminal domain N288_21745 PF01979 Amidohydrolase family N288_21750 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N288_21770 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV N288_21775 PF13349 Putative adhesin N288_21790 PF13472 GDSL-like Lipase/Acylhydrolase family N288_21795 PF17760 UvrA interaction domain N288_21795 PF00005 ABC transporter N288_21795 PF17755 UvrA DNA-binding domain N288_21800 PF02151 UvrB/uvrC motif N288_21800 PF00271 Helicase conserved C-terminal domain N288_21800 PF12344 Ultra-violet resistance protein B N288_21800 PF17757 UvrB interaction domain N288_21800 PF04851 Type III restriction enzyme, res subunit N288_21805 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) N288_21815 PF01546 Peptidase family M20/M25/M40 N288_21815 PF07687 Peptidase dimerisation domain N288_21820 PF03180 NLPA lipoprotein N288_21825 PF00528 Binding-protein-dependent transport system inner membrane component N288_21830 PF09383 NIL domain N288_21830 PF00005 ABC transporter N288_21845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_21845 PF08447 PAS fold N288_21845 PF00512 His Kinase A (phospho-acceptor) domain N288_21845 PF00989 PAS fold N288_21850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_21875 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N288_21875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_21880 PF17820 PDZ domain N288_21885 PF17820 PDZ domain N288_21885 PF03572 Peptidase family S41 N288_21885 PF01471 Putative peptidoglycan binding domain N288_21890 PF01740 STAS domain N288_21890 PF08678 Rsbr N terminal N288_21895 PF00877 NlpC/P60 family N288_21900 PF18075 FtsX extracellular domain N288_21900 PF02687 FtsX-like permease family N288_21905 PF00005 ABC transporter N288_21910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N288_21915 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_21915 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_21925 PF00472 RF-1 domain N288_21925 PF03462 PCRF domain N288_21930 PF07516 SecA Wing and Scaffold domain N288_21930 PF01043 SecA preprotein cross-linking domain N288_21930 PF07517 SecA DEAD-like domain N288_21930 PF02810 SEC-C motif N288_21950 PF02810 SEC-C motif N288_21950 PF05225 helix-turn-helix, Psq domain N288_21965 PF02743 Cache domain N288_21965 PF00672 HAMP domain N288_21965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_21970 PF02417 Chromate transporter N288_21975 PF02417 Chromate transporter N288_21980 PF07070 SpoOM protein N288_21990 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus N288_21990 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein N288_22005 PF02561 Flagellar protein FliS N288_22010 PF07196 Flagellin hook IN motif N288_22010 PF07195 Flagellar hook-associated protein 2 C-terminus N288_22010 PF02465 Flagellar hook-associated protein 2 N-terminus N288_22010 PF07196 Flagellin hook IN motif N288_22010 PF07195 Flagellar hook-associated protein 2 C-terminus N288_22010 PF02465 Flagellar hook-associated protein 2 N-terminus N288_22015 PF03646 FlaG protein N288_22020 PF00700 Bacterial flagellin C-terminal helical region N288_22020 PF00669 Bacterial flagellin N-terminal helical region N288_22020 PF00700 Bacterial flagellin C-terminal helical region N288_22020 PF00669 Bacterial flagellin N-terminal helical region N288_22025 PF00700 Bacterial flagellin C-terminal helical region N288_22025 PF00669 Bacterial flagellin N-terminal helical region N288_22030 PF02599 Global regulator protein family N288_22035 PF02623 FliW protein N288_22045 PF00669 Bacterial flagellin N-terminal helical region N288_22045 PF00700 Bacterial flagellin C-terminal helical region N288_22050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N288_22050 PF00460 Flagella basal body rod protein N288_22075 PF00271 Helicase conserved C-terminal domain N288_22075 PF04851 Type III restriction enzyme, res subunit N288_22080 PF00872 Transposase, Mutator family N288_22100 PF02645 Uncharacterised protein, DegV family COG1307 N288_22115 PF00072 Response regulator receiver domain N288_22115 PF00196 Bacterial regulatory proteins, luxR family N288_22120 PF07730 Histidine kinase N288_22120 PF05384 Sensor protein DegS N288_22120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_22125 PF01205 Uncharacterized protein family UPF0029 N288_22125 PF09186 Domain of unknown function (DUF1949) N288_22130 PF03816 Cell envelope-related transcriptional attenuator domain N288_22150 PF00953 Glycosyl transferase family 4 N288_22155 PF07516 SecA Wing and Scaffold domain N288_22155 PF07517 SecA DEAD-like domain N288_22155 PF01043 SecA preprotein cross-linking domain N288_22180 PF03062 MBOAT, membrane-bound O-acyltransferase family N288_22230 PF07687 Peptidase dimerisation domain N288_22230 PF01546 Peptidase family M20/M25/M40 N288_22245 PF03009 Glycerophosphoryl diester phosphodiesterase family N288_22250 PF03009 Glycerophosphoryl diester phosphodiesterase family N288_22265 PF07075 Protein of unknown function (DUF1343) N288_22270 PF00933 Glycosyl hydrolase family 3 N terminal domain N288_22270 PF01915 Glycosyl hydrolase family 3 C-terminal domain N288_22275 PF00144 Beta-lactamase N288_22285 PF05816 Toxic anion resistance protein (TelA) N288_22290 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein N288_22300 PF00149 Calcineurin-like phosphoesterase N288_22315 PF00561 alpha/beta hydrolase fold N288_22320 PF17202 Single cache domain 3 N288_22320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_22320 PF00672 HAMP domain N288_22325 PF18801 response regulator aspartate phosphatase H, N terminal N288_22335 PF07504 Fungalysin/Thermolysin Propeptide Motif N288_22335 PF03413 Peptidase propeptide and YPEB domain N288_22335 PF01447 Thermolysin metallopeptidase, catalytic domain N288_22335 PF02868 Thermolysin metallopeptidase, alpha-helical domain N288_22345 PF06725 3D domain N288_22345 PF03990 G5-linked-Ubiquitin-like domain N288_22345 PF07501 G5 domain N288_22365 PF00128 Alpha amylase, catalytic domain N288_22370 PF00294 pfkB family carbohydrate kinase N288_22375 PF16657 Maltogenic Amylase, C-terminal domain N288_22375 PF00128 Alpha amylase, catalytic domain N288_22380 PF00528 Binding-protein-dependent transport system inner membrane component N288_22385 PF00528 Binding-protein-dependent transport system inner membrane component N288_22395 PF00356 Bacterial regulatory proteins, lacI family N288_22405 PF07687 Peptidase dimerisation domain N288_22405 PF01546 Peptidase family M20/M25/M40 N288_22410 PF01546 Peptidase family M20/M25/M40 N288_22410 PF07687 Peptidase dimerisation domain N288_22415 PF01546 Peptidase family M20/M25/M40 N288_22420 PF03806 AbgT putative transporter family N288_22425 PF17820 PDZ domain N288_22425 PF13180 PDZ domain N288_22430 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N288_22435 PF00106 short chain dehydrogenase N288_22440 PF03786 D-mannonate dehydratase (UxuA) N288_22445 PF01081 KDPG and KHG aldolase N288_22450 PF08240 Alcohol dehydrogenase GroES-like domain N288_22450 PF00107 Zinc-binding dehydrogenase N288_22455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N288_22465 PF03480 Bacterial extracellular solute-binding protein, family 7 N288_22470 PF02615 Malate/L-lactate dehydrogenase N288_22475 PF01380 SIS domain N288_22480 PF00294 pfkB family carbohydrate kinase N288_22485 PF00356 Bacterial regulatory proteins, lacI family N288_22490 PF01522 Polysaccharide deacetylase N288_22495 PF00535 Glycosyl transferase family 2 N288_22500 PF00722 Glycosyl hydrolases family 16 N288_22515 PF00128 Alpha amylase, catalytic domain N288_22525 PF01381 Helix-turn-helix N288_22535 PF01510 N-acetylmuramoyl-L-alanine amidase N288_22535 PF01476 LysM domain N288_22535 PF01471 Putative peptidoglycan binding domain N288_22550 PF07969 Amidohydrolase family N288_22555 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin N288_22560 PF01566 Natural resistance-associated macrophage protein N288_22570 PF00701 Dihydrodipicolinate synthetase family N288_22585 PF13416 Bacterial extracellular solute-binding protein N288_22590 PF00528 Binding-protein-dependent transport system inner membrane component N288_22595 PF00528 Binding-protein-dependent transport system inner membrane component N288_22600 PF04854 Protein of unknown function, DUF624 N288_22610 PF00392 Bacterial regulatory proteins, gntR family N288_22610 PF07702 UTRA domain N288_22625 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N288_22640 PF07470 Glycosyl Hydrolase Family 88 N288_22650 PF07883 Cupin domain N288_22665 PF00149 Calcineurin-like phosphoesterase N288_22670 PF00392 Bacterial regulatory proteins, gntR family N288_22670 PF07702 UTRA domain N288_22675 PF00294 pfkB family carbohydrate kinase N288_22680 PF01380 SIS domain N288_22685 PF13520 Amino acid permease N288_22690 PF01261 Xylose isomerase-like TIM barrel N288_22705 PF01565 FAD binding domain N288_22720 PF13419 Haloacid dehalogenase-like hydrolase N288_22725 PF00923 Transaldolase/Fructose-6-phosphate aldolase N288_22730 PF03829 PTS system glucitol/sorbitol-specific IIA component N288_22735 PF03612 Sorbitol phosphotransferase enzyme II N-terminus N288_22735 PF07663 Sorbitol phosphotransferase enzyme II C-terminus N288_22740 PF03608 PTS system enzyme II sorbitol-specific factor N288_22750 PF00874 PRD domain N288_22750 PF08279 HTH domain N288_22750 PF05043 Mga helix-turn-helix domain N288_22750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N288_22755 PF00106 short chain dehydrogenase N288_22765 PF00480 ROK family N288_22770 PF00392 Bacterial regulatory proteins, gntR family N288_22770 PF07702 UTRA domain N288_22775 PF00232 Glycosyl hydrolase family 1 N288_22780 PF02378 Phosphotransferase system, EIIC N288_22780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N288_22780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N288_22785 PF00874 PRD domain N288_22785 PF08279 HTH domain N288_22785 PF05043 Mga helix-turn-helix domain N288_22785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N288_22790 PF01238 Phosphomannose isomerase type I N288_22805 PF01740 STAS domain N288_22805 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain N288_22810 PF13180 PDZ domain N288_22830 PF00480 ROK family N288_22835 PF00232 Glycosyl hydrolase family 1 N288_22840 PF12833 Helix-turn-helix domain N288_22840 PF12833 Helix-turn-helix domain N288_22840 PF00072 Response regulator receiver domain N288_22840 PF00072 Response regulator receiver domain N288_22845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_22845 PF02743 Cache domain N288_22845 PF06580 Histidine kinase N288_22845 PF00672 HAMP domain N288_22850 PF00528 Binding-protein-dependent transport system inner membrane component N288_22855 PF00528 Binding-protein-dependent transport system inner membrane component N288_22875 PF00480 ROK family N288_22875 PF01047 MarR family N288_22880 PF13580 SIS domain N288_22885 PF01979 Amidohydrolase family N288_22890 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N288_22930 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N288_22930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N288_22935 PF00171 Aldehyde dehydrogenase family N288_22940 PF00465 Iron-containing alcohol dehydrogenase N288_22945 PF02615 Malate/L-lactate dehydrogenase N288_22950 PF03737 Aldolase/RraA N288_22955 PF00356 Bacterial regulatory proteins, lacI family N288_22960 PF00528 Binding-protein-dependent transport system inner membrane component N288_22965 PF00528 Binding-protein-dependent transport system inner membrane component N288_22970 PF13416 Bacterial extracellular solute-binding protein N288_22975 PF02502 Ribose/Galactose Isomerase N288_22980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N288_22980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N288_22985 PF03737 Aldolase/RraA N288_22990 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase N288_23000 PF05448 Acetyl xylan esterase (AXE1) N288_23005 PF00480 ROK family N288_23010 PF01074 Glycosyl hydrolases family 38 N-terminal domain N288_23010 PF07748 Glycosyl hydrolases family 38 C-terminal domain N288_23010 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 N288_23010 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain N288_23010 PF09261 Alpha mannosidase middle domain N288_23015 PF00890 FAD binding domain N288_23020 PF00528 Binding-protein-dependent transport system inner membrane component N288_23025 PF00528 Binding-protein-dependent transport system inner membrane component N288_23030 PF01547 Bacterial extracellular solute-binding protein N288_23040 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N288_23045 PF01055 Glycosyl hydrolases family 31 N288_23045 PF13802 Galactose mutarotase-like N288_23045 PF17137 Domain of unknown function (DUF5110) N288_23045 PF16338 Domain of unknown function (DUF4968) N288_23050 PF00528 Binding-protein-dependent transport system inner membrane component N288_23065 PF07470 Glycosyl Hydrolase Family 88 N288_23075 PF00072 Response regulator receiver domain N288_23075 PF12833 Helix-turn-helix domain N288_23080 PF02743 Cache domain N288_23080 PF00672 HAMP domain N288_23080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_23080 PF06580 Histidine kinase N288_23085 PF04854 Protein of unknown function, DUF624 N288_23090 PF00092 von Willebrand factor type A domain N288_23145 PF00350 Dynamin family N288_23185 PF07690 Major Facilitator Superfamily N288_23200 PF02463 RecF/RecN/SMC N terminal domain N288_23215 PF16363 GDP-mannose 4,6 dehydratase N288_23230 PF01695 IstB-like ATP binding protein N288_23235 PF00665 Integrase core domain N288_23245 PF16363 GDP-mannose 4,6 dehydratase N288_23255 PF00676 Dehydrogenase E1 component N288_23265 PF16363 GDP-mannose 4,6 dehydratase N288_23270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_23270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N288_23275 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N288_23280 PF00132 Bacterial transferase hexapeptide (six repeats) N288_23285 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N288_23285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N288_23285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N288_23295 PF00534 Glycosyl transferases group 1 N288_23295 PF13439 Glycosyltransferase Family 4 N288_23305 PF00534 Glycosyl transferases group 1 N288_23305 PF13439 Glycosyltransferase Family 4 N288_23310 PF13439 Glycosyltransferase Family 4 N288_23310 PF00534 Glycosyl transferases group 1 N288_23315 PF02397 Bacterial sugar transferase N288_23320 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N288_23325 PF02719 Polysaccharide biosynthesis protein N288_23335 PF13614 AAA domain N288_23340 PF13807 G-rich domain on putative tyrosine kinase N288_23340 PF02706 Chain length determinant protein N288_23350 PF04231 Endonuclease I N288_23355 PF02872 5'-nucleotidase, C-terminal domain N288_23355 PF00149 Calcineurin-like phosphoesterase N288_23365 PF00534 Glycosyl transferases group 1 N288_23365 PF13439 Glycosyltransferase Family 4 N288_23375 PF03808 Glycosyl transferase WecB/TagA/CpsF family N288_23380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N288_23380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N288_23380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N288_23390 PF13439 Glycosyltransferase Family 4 N288_23390 PF00534 Glycosyl transferases group 1 N288_23395 PF03023 Lipid II flippase MurJ N288_23405 PF04542 Sigma-70 region 2 N288_23405 PF08281 Sigma-70, region 4 N288_23415 PF00395 S-layer homology domain N288_23415 PF02638 Glycosyl hydrolase-like 10 N288_23415 PF02368 Bacterial Ig-like domain (group 2) N288_23425 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase N288_23425 PF17890 Peptidoglycan hydrolase LytB WW-like domain N288_23425 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain N288_23425 PF01473 Putative cell wall binding repeat N288_23430 PF00877 NlpC/P60 family N288_23430 PF01476 LysM domain N288_23435 PF05922 Peptidase inhibitor I9 N288_23435 PF00082 Subtilase family N288_23440 PF00395 S-layer homology domain N288_23440 PF01520 N-acetylmuramoyl-L-alanine amidase N288_23445 PF00082 Subtilase family N288_23445 PF02225 PA domain N288_23445 PF06280 Fn3-like domain N288_23445 PF00746 LPXTG cell wall anchor motif N288_23460 PF02872 5'-nucleotidase, C-terminal domain N288_23460 PF00149 Calcineurin-like phosphoesterase N288_23480 PF04434 SWIM zinc finger N288_23485 PF00176 SNF2 family N-terminal domain N288_23485 PF00271 Helicase conserved C-terminal domain N288_23485 PF12419 SNF2 Helicase protein N288_23500 PF06280 Fn3-like domain N288_23500 PF00082 Subtilase family N288_23500 PF02225 PA domain N288_23500 PF00746 LPXTG cell wall anchor motif N288_23510 PF00436 Single-strand binding protein family N288_23530 PF07977 FabA-like domain N288_23540 PF00460 Flagella basal body rod protein N288_23540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N288_23545 PF00460 Flagella basal body rod protein N288_23545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N288_23565 PF12116 Stage III sporulation protein D N288_23570 PF00877 NlpC/P60 family N288_23570 PF01476 LysM domain N288_23575 PF00474 Sodium:solute symporter family N288_23590 PF01470 Pyroglutamyl peptidase N288_23600 PF01551 Peptidase family M23 N288_23610 PF08486 Stage II sporulation protein N288_23615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N288_23620 PF08680 TATA-box binding N288_23635 PF00361 Proton-conducting membrane transporter N288_23640 PF00361 Proton-conducting membrane transporter N288_23645 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus N288_23645 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus N288_23645 PF00361 Proton-conducting membrane transporter N288_23650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L N288_23655 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 N288_23660 PF12838 4Fe-4S dicluster domain N288_23665 PF00146 NADH dehydrogenase N288_23670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit N288_23675 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit N288_23680 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit N288_23685 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 N288_23690 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain N288_23690 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain N288_23695 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N288_23695 PF02874 ATP synthase alpha/beta family, beta-barrel domain N288_23700 PF00231 ATP synthase N288_23705 PF00306 ATP synthase alpha/beta chain, C terminal domain N288_23705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N288_23705 PF02874 ATP synthase alpha/beta family, beta-barrel domain N288_23710 PF00213 ATP synthase delta (OSCP) subunit N288_23715 PF00430 ATP synthase B/B' CF(0) N288_23720 PF00137 ATP synthase subunit C N288_23725 PF00119 ATP synthase A chain N288_23730 PF03899 ATP synthase I chain N288_23740 PF00082 Subtilase family N288_23740 PF02225 PA domain N288_23740 PF13860 FlgD Ig-like domain N288_23740 PF05922 Peptidase inhibitor I9 N288_23750 PF02350 UDP-N-acetylglucosamine 2-epimerase N288_23760 PF00464 Serine hydroxymethyltransferase N288_23770 PF08281 Sigma-70, region 4 N288_23770 PF04542 Sigma-70 region 2 N288_23775 PF04260 Protein of unknown function (DUF436) N288_23780 PF02502 Ribose/Galactose Isomerase N288_23785 PF00877 NlpC/P60 family N288_23795 PF02743 Cache domain N288_23795 PF00672 HAMP domain N288_23795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_23800 PF01451 Low molecular weight phosphotyrosine protein phosphatase N288_23810 PF02659 Putative manganese efflux pump N288_23815 PF03481 Putative GTP-binding controlling metal-binding N288_23815 PF01300 Telomere recombination N288_23830 PF09551 Stage II sporulation protein R (spore_II_R) N288_23835 PF17827 PrmC N-terminal domain N288_23835 PF13847 Methyltransferase domain N288_23840 PF00472 RF-1 domain N288_23840 PF03462 PCRF domain N288_23855 PF00265 Thymidine kinase N288_23860 PF01197 Ribosomal protein L31 N288_23865 PF07498 Rho termination factor, N-terminal domain N288_23865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N288_23865 PF07497 Rho termination factor, RNA-binding domain N288_23875 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded N288_23880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N288_23885 PF00923 Transaldolase/Fructose-6-phosphate aldolase N288_23890 PF01116 Fructose-bisphosphate aldolase class-II N288_23895 PF00072 Response regulator receiver domain N288_23905 PF10740 Domain of unknown function (DUF2529) N288_23910 PF00117 Glutamine amidotransferase class-I N288_23910 PF06418 CTP synthase N-terminus N288_23915 PF05066 HB1, ASXL, restriction endonuclease HTH domain N288_23925 PF01642 Methylmalonyl-CoA mutase N288_23925 PF02310 B12 binding domain N288_23935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_23935 PF02770 Acyl-CoA dehydrogenase, middle domain N288_23935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_23940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N288_23940 PF02770 Acyl-CoA dehydrogenase, middle domain N288_23940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N288_23945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N288_23945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N288_23950 PF00108 Thiolase, N-terminal domain N288_23950 PF02803 Thiolase, C-terminal domain N288_23955 PF13183 4Fe-4S dicluster domain N288_23955 PF02754 Cysteine-rich domain N288_23960 PF13091 PLD-like domain N288_23965 PF03851 UV-endonuclease UvdE N288_23980 PF03485 Arginyl tRNA synthetase N terminal domain N288_23980 PF05746 DALR anticodon binding domain N288_23980 PF00750 tRNA synthetases class I (R) N288_23985 PF09148 Domain of unknown function (DUF1934) N288_23990 PF00491 Arginase family N288_24000 PF00905 Penicillin binding protein transpeptidase domain N288_24000 PF00912 Transglycosylase N288_24005 PF08741 YwhD family N288_24010 PF02163 Peptidase family M50 N288_24015 PF01361 Tautomerase enzyme N288_24025 PF01966 HD domain N288_24030 PF07293 Protein of unknown function (DUF1450) N288_24040 PF03099 Biotin/lipoate A/B protein ligase family N288_24045 PF01515 Phosphate acetyl/butaryl transferase N288_24060 PF07486 Cell Wall Hydrolase N288_24065 PF09671 Spore coat protein (Spore_GerQ) N288_24070 PF04241 Protein of unknown function (DUF423) N288_24085 PF03167 Uracil DNA glycosylase superfamily N288_24095 PF11181 Heat induced stress protein YflT N288_24100 PF00899 ThiF family N288_24105 PF02597 ThiS family N288_24110 PF02391 MoaE protein N288_24115 PF12804 MobA-like NTP transferase domain N288_24130 PF00005 ABC transporter N288_24135 PF00512 His Kinase A (phospho-acceptor) domain N288_24135 PF00672 HAMP domain N288_24140 PF00486 Transcriptional regulatory protein, C terminal N288_24140 PF00072 Response regulator receiver domain N288_24145 PF08543 Phosphomethylpyrimidine kinase N288_24150 PF08830 Protein of unknown function (DUF1806) N288_24155 PF02585 GlcNAc-PI de-N-acetylase N288_24165 PF00005 ABC transporter N288_24175 PF00440 Bacterial regulatory proteins, tetR family N288_24175 PF08361 MAATS-type transcriptional repressor, C-terminal region N288_24180 PF07995 Glucose / Sorbosone dehydrogenase N288_24195 PF02028 BCCT, betaine/carnitine/choline family transporter N288_24205 PF00574 Clp protease N288_24220 PF02667 Short chain fatty acid transporter N288_24225 PF13411 MerR HTH family regulatory protein N288_24225 PF07739 TipAS antibiotic-recognition domain N288_24230 PF00664 ABC transporter transmembrane region N288_24230 PF00005 ABC transporter N288_24260 PF04073 Aminoacyl-tRNA editing domain N288_24265 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N288_24265 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N288_24265 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N288_24270 PF00483 Nucleotidyl transferase N288_24275 PF16657 Maltogenic Amylase, C-terminal domain N288_24275 PF00128 Alpha amylase, catalytic domain N288_24285 PF08241 Methyltransferase domain N288_24290 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_24300 PF00578 AhpC/TSA family N288_24315 PF01546 Peptidase family M20/M25/M40 N288_24320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_24330 PF07687 Peptidase dimerisation domain N288_24330 PF01546 Peptidase family M20/M25/M40 N288_24335 PF08245 Mur ligase middle domain N288_24335 PF02875 Mur ligase family, glutamate ligase domain N288_24335 PF01225 Mur ligase family, catalytic domain N288_24340 PF00326 Prolyl oligopeptidase family N288_24345 PF02567 Phenazine biosynthesis-like protein N288_24350 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 N288_24350 PF00535 Glycosyl transferase family 2 N288_24355 PF00581 Rhodanese-like domain N288_24365 PF02653 Branched-chain amino acid transport system / permease component N288_24370 PF00005 ABC transporter N288_24375 PF13407 Periplasmic binding protein domain N288_24385 PF01497 Periplasmic binding protein N288_24385 PF12833 Helix-turn-helix domain N288_24390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_24390 PF06580 Histidine kinase N288_24390 PF07694 5TMR of 5TMR-LYT N288_24400 PF00072 Response regulator receiver domain N288_24400 PF12833 Helix-turn-helix domain N288_24420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N288_24430 PF11975 Family 4 glycosyl hydrolase C-terminal domain N288_24430 PF02056 Family 4 glycosyl hydrolase N288_24435 PF02378 Phosphotransferase system, EIIC N288_24435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N288_24435 PF00367 phosphotransferase system, EIIB N288_24440 PF01380 SIS domain N288_24440 PF01418 Helix-turn-helix domain, rpiR family N288_24445 PF07690 Major Facilitator Superfamily N288_24445 PF00083 Sugar (and other) transporter N288_24450 PF02423 Ornithine cyclodeaminase/mu-crystallin family N288_24455 PF01799 [2Fe-2S] binding domain N288_24455 PF00111 2Fe-2S iron-sulfur cluster binding domain N288_24465 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase N288_24465 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain N288_24470 PF12804 MobA-like NTP transferase domain N288_24475 PF13478 XdhC Rossmann domain N288_24475 PF02625 XdhC and CoxI family N288_24480 PF00486 Transcriptional regulatory protein, C terminal N288_24480 PF00072 Response regulator receiver domain N288_24485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_24490 PF00005 ABC transporter N288_24500 PF01810 LysE type translocator N288_24505 PF00578 AhpC/TSA family N288_24510 PF13192 Thioredoxin domain N288_24510 PF07992 Pyridine nucleotide-disulphide oxidoreductase N288_24515 PF07690 Major Facilitator Superfamily N288_24520 PF00440 Bacterial regulatory proteins, tetR family N288_24540 PF00106 short chain dehydrogenase N288_24545 PF01022 Bacterial regulatory protein, arsR family N288_24560 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal N288_24560 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal N288_24565 PF05675 Protein of unknown function (DUF817) N288_24570 PF13443 Cro/C1-type HTH DNA-binding domain N288_24575 PF11188 Protein of unknown function (DUF2975) N288_24590 PF07883 Cupin domain N288_24610 PF07875 Coat F domain N288_24615 PF00107 Zinc-binding dehydrogenase N288_24615 PF08240 Alcohol dehydrogenase GroES-like domain N288_24615 PF13823 Alcohol dehydrogenase GroES-associated N288_24625 PF07875 Coat F domain N288_24630 PF06628 Catalase-related immune-responsive N288_24630 PF00199 Catalase N288_24665 PF00106 short chain dehydrogenase N288_24675 PF04463 Protein of unknown function (DUF523) N288_24685 PF13302 Acetyltransferase (GNAT) domain N288_24700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N288_24715 PF04239 Protein of unknown function (DUF421) N288_24725 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N288_24735 PF03480 Bacterial extracellular solute-binding protein, family 7 N288_24740 PF00392 Bacterial regulatory proteins, gntR family N288_24740 PF07702 UTRA domain N288_24745 PF00367 phosphotransferase system, EIIB N288_24745 PF02378 Phosphotransferase system, EIIC N288_24750 PF07563 Protein of unknown function (DUF1541) N288_24755 PF00512 His Kinase A (phospho-acceptor) domain N288_24755 PF00989 PAS fold N288_24755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_24755 PF16736 Single Cache-like N288_24760 PF00486 Transcriptional regulatory protein, C terminal N288_24760 PF00072 Response regulator receiver domain N288_24775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_24775 PF00512 His Kinase A (phospho-acceptor) domain N288_24780 PF00486 Transcriptional regulatory protein, C terminal N288_24780 PF00072 Response regulator receiver domain N288_24790 PF08450 SMP-30/Gluconolactonase/LRE-like region N288_24805 PF13021 Domain of unknown function (DUF3885) N288_24815 PF01047 MarR family N288_24820 PF03788 LrgA family N288_24825 PF04172 LrgB-like family N288_24830 PF00582 Universal stress protein family N288_24840 PF00005 ABC transporter N288_24850 PF09297 NADH pyrophosphatase zinc ribbon domain N288_24850 PF00293 NUDIX domain N288_24855 PF02517 CPBP intramembrane metalloprotease N288_24860 PF13411 MerR HTH family regulatory protein N288_24860 PF06445 GyrI-like small molecule binding domain N288_24880 PF01081 KDPG and KHG aldolase N288_24885 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N288_24885 PF00367 phosphotransferase system, EIIB N288_24885 PF02378 Phosphotransferase system, EIIC N288_24890 PF13378 Enolase C-terminal domain-like N288_24890 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N288_24895 PF07702 UTRA domain N288_24895 PF00392 Bacterial regulatory proteins, gntR family N288_24930 PF10503 Esterase PHB depolymerase N288_24935 PF01980 tRNA-methyltransferase O N288_24950 PF00005 ABC transporter N288_24955 PF00392 Bacterial regulatory proteins, gntR family N288_24955 PF00155 Aminotransferase class I and II N288_25020 PF12833 Helix-turn-helix domain N288_25020 PF06445 GyrI-like small molecule binding domain N288_25030 PF12697 Alpha/beta hydrolase family N288_25040 PF12146 Serine aminopeptidase, S33 N288_25045 PF04299 Putative FMN-binding domain N288_25050 PF00583 Acetyltransferase (GNAT) family N288_25055 PF01047 MarR family N288_25085 PF10415 Fumarase C C-terminus N288_25085 PF00206 Lyase N288_25095 PF07690 Major Facilitator Superfamily N288_25125 PF00083 Sugar (and other) transporter N288_25125 PF08946 Osmosensory transporter coiled coil N288_25145 PF00005 ABC transporter N288_25145 PF13732 Domain of unknown function (DUF4162) N288_25195 PF00300 Histidine phosphatase superfamily (branch 1) N288_25195 PF00293 NUDIX domain N288_25205 PF02559 CarD-like/TRCF domain N288_25210 PF00583 Acetyltransferase (GNAT) family N288_25245 PF13344 Haloacid dehalogenase-like hydrolase N288_25245 PF00293 NUDIX domain N288_25250 PF00561 alpha/beta hydrolase fold N288_25255 PF03466 LysR substrate binding domain N288_25255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N288_25280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N288_25280 PF00672 HAMP domain N288_25280 PF17202 Single cache domain 3 N288_25295 PF01613 Flavin reductase like domain N288_25300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N288_25305 PF03358 NADPH-dependent FMN reductase N288_25310 PF01047 MarR family N288_25315 PF04264 YceI-like domain N288_25345 PF12679 ABC-2 family transporter protein N288_25350 PF00005 ABC transporter N288_25365 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N288_25365 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N288_25380 PF00672 HAMP domain N288_25380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_25380 PF00512 His Kinase A (phospho-acceptor) domain N288_25385 PF00486 Transcriptional regulatory protein, C terminal N288_25385 PF00072 Response regulator receiver domain N288_25390 PF03176 MMPL family N288_25405 PF02702 Osmosensitive K+ channel His kinase sensor domain N288_25410 PF02669 K+-transporting ATPase, c chain N288_25420 PF03814 Potassium-transporting ATPase A subunit N288_25450 PF00120 Glutamine synthetase, catalytic domain N288_25450 PF03951 Glutamine synthetase, beta-Grasp domain N288_25475 PF10138 vWA found in TerF C terminus N288_25515 PF00027 Cyclic nucleotide-binding domain N288_25530 PF04166 Pyridoxal phosphate biosynthetic protein PdxA N288_25535 PF17042 Nucleotide-binding C-terminal domain N288_25535 PF07005 Sugar-binding N-terminal domain N288_25540 PF03812 2-keto-3-deoxygluconate permease N288_25545 PF13188 PAS domain N288_25545 PF02954 Bacterial regulatory protein, Fis family N288_25545 PF00158 Sigma-54 interaction domain N288_25550 PF03816 Cell envelope-related transcriptional attenuator domain N288_25560 PF03932 CutC family N288_25575 PF00324 Amino acid permease N288_25580 PF00245 Alkaline phosphatase N288_25590 PF05163 DinB family N288_25600 PF02687 FtsX-like permease family N288_25600 PF12704 MacB-like periplasmic core domain N288_25605 PF00005 ABC transporter N288_25620 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain N288_25620 PF01740 STAS domain N288_25625 PF00892 EamA-like transporter family N288_25640 PF00005 ABC transporter N288_25645 PF00528 Binding-protein-dependent transport system inner membrane component N288_25650 PF00497 Bacterial extracellular solute-binding proteins, family 3 N288_25655 PF10924 Protein of unknown function (DUF2711) N288_25665 PF04069 Substrate binding domain of ABC-type glycine betaine transport system N288_25670 PF00528 Binding-protein-dependent transport system inner membrane component N288_25675 PF00571 CBS domain N288_25675 PF00005 ABC transporter N288_25690 PF13229 Right handed beta helix region N288_25705 PF01032 FecCD transport family N288_25710 PF01032 FecCD transport family N288_25715 PF00005 ABC transporter N288_25720 PF01266 FAD dependent oxidoreductase N288_25720 PF16901 C-terminal domain of alpha-glycerophosphate oxidase N288_25725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain N288_25725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain N288_25735 PF04309 Glycerol-3-phosphate responsive antiterminator N288_25750 PF10057 Uncharacterized conserved protein (DUF2294) N288_25755 PF07849 Protein of unknown function (DUF1641) N288_25760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N288_25760 PF01568 Molydopterin dinucleotide binding domain N288_25760 PF00037 4Fe-4S binding domain N288_25760 PF00384 Molybdopterin oxidoreductase N288_25760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N288_25765 PF01226 Formate/nitrite transporter N288_25770 PF03880 DbpA RNA binding domain N288_25770 PF00270 DEAD/DEAH box helicase N288_25770 PF00271 Helicase conserved C-terminal domain N288_25785 PF10011 Predicted membrane protein (DUF2254) N288_25790 PF07690 Major Facilitator Superfamily N288_25795 PF04397 LytTr DNA-binding domain N288_25795 PF00072 Response regulator receiver domain N288_25800 PF06580 Histidine kinase N288_25800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_25800 PF07694 5TMR of 5TMR-LYT N288_25805 PF02590 Predicted SPOUT methyltransferase N288_25815 PF13180 PDZ domain N288_25825 PF00753 Metallo-beta-lactamase superfamily N288_25830 PF09648 YycH protein N288_25835 PF07435 YycH protein N288_25840 PF13426 PAS domain N288_25840 PF00512 His Kinase A (phospho-acceptor) domain N288_25840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_25840 PF00672 HAMP domain N288_25845 PF00072 Response regulator receiver domain N288_25845 PF00486 Transcriptional regulatory protein, C terminal N288_25850 PF01551 Peptidase family M23 N288_25850 PF10145 Phage-related minor tail protein N288_25850 PF01464 Transglycosylase SLT domain N288_25875 PF00005 ABC transporter N288_25875 PF12704 MacB-like periplasmic core domain N288_25875 PF02687 FtsX-like permease family N288_25880 PF00005 ABC transporter N288_25885 PF00672 HAMP domain N288_25885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N288_25885 PF00512 His Kinase A (phospho-acceptor) domain N288_25890 PF00486 Transcriptional regulatory protein, C terminal N288_25890 PF00072 Response regulator receiver domain N288_25900 PF00709 Adenylosuccinate synthetase N288_25905 PF00772 DnaB-like helicase N terminal domain N288_25905 PF03796 DnaB-like helicase C terminal domain N288_25910 PF01281 Ribosomal protein L9, N-terminal domain N288_25910 PF03948 Ribosomal protein L9, C-terminal domain N288_25915 PF01368 DHH family N288_25915 PF02272 DHHA1 domain N288_25925 PF01084 Ribosomal protein S18 N288_25930 PF00436 Single-strand binding protein family N288_25935 PF01250 Ribosomal protein S6 N288_25940 PF00534 Glycosyl transferases group 1 N288_25940 PF13439 Glycosyltransferase Family 4 N288_25945 PF01569 PAP2 superfamily N288_25950 PF01926 50S ribosome-binding GTPase N288_25950 PF06071 Protein of unknown function (DUF933) N288_25960 PF06107 Bacterial protein of unknown function (DUF951) N288_25965 PF00924 Mechanosensitive ion channel N288_25970 PF06866 Protein of unknown function (DUF1256) N288_25980 PF02195 ParB-like nuclease domain N288_25980 PF17762 HTH domain found in ParB protein N288_25985 PF13614 AAA domain N288_25995 PF02195 ParB-like nuclease domain N288_25995 PF17762 HTH domain found in ParB protein N288_26000 PF02527 rRNA small subunit methyltransferase G N288_26005 PF13932 GidA associated domain N288_26005 PF01134 Glucose inhibited division protein A N288_26010 PF01926 50S ribosome-binding GTPase N288_26010 PF12631 MnmE helical domain N288_26010 PF10396 GTP-binding protein TrmE N-terminus N288_26015 PF01424 R3H domain N288_26015 PF14804 Jag N-terminus N288_26020 PF02096 60Kd inner membrane protein N288_26025 PF00825 Ribonuclease P