N288_00005 SM00382 ATPases associated with a variety of cellular activities N288_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain N288_00010 SM00480 DNA polymerase III beta subunit N288_00035 SM00387 Histidine kinase-like ATPases N288_00035 SM00433 TopoisomeraseII N288_00040 SM00434 DNA Topoisomerase IV N288_00045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_00080 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_00080 SM01240 N288_00080 N288_00085 SM00936 Penicillin-binding protein 5, C-terminal domain N288_00125 SM00257 Lysin motif N288_00125 SM00636 N288_00125 N288_00140 SM00382 ATPases associated with a variety of cellular activities N288_00150 SM00493 N288_00150 N288_00250 SM00966 SpoVT / AbrB like domain N288_00270 SM01208 N288_00270 N288_00275 SM00493 N288_00275 N288_00280 SM00650 Ribosomal RNA adenine dimethylases N288_00335 SM01400 N288_00335 N288_00355 SM00487 DEAD-like helicases superfamily N288_00355 SM00490 helicase superfamily c-terminal domain N288_00355 SM00982 N288_00355 N288_00355 SM01058 CarD-like/TRCF domain N288_00360 SM00966 SpoVT / AbrB like domain N288_00375 SM00363 S4 RNA-binding domain N288_00395 SM00316 Ribosomal protein S1-like RNA-binding domain N288_00410 SM00331 Sigma factor PP2C-like phosphatases N288_00410 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain N288_00420 SM00220 Serine/Threonine protein kinases, catalytic domain N288_00425 SM00977 TilS substrate C-terminal domain N288_00435 SM00382 ATPases associated with a variety of cellular activities N288_00480 SM00905 Dihydroneopterin aldolase N288_00490 SM00530 Helix-turn-helix XRE-family like proteins N288_00600 SM00382 ATPases associated with a variety of cellular activities N288_00600 SM01086 C-terminal, D2-small domain, of ClpB protein N288_00605 SM00382 ATPases associated with a variety of cellular activities N288_00615 SM00670 Large family of predicted nucleotide-binding domains N288_00640 SM00840 N288_00640 N288_00645 SM00535 Ribonuclease III family N288_00650 SM00967 RNA 2'-O ribose methyltransferase substrate binding N288_00660 SM00421 helix_turn_helix, Lux Regulon N288_00675 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. N288_00675 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. N288_00710 SM00663 RNA polymerase I subunit A N-terminus N288_00730 SM00838 Elongation factor G C-terminus N288_00730 SM00889 Elongation factor G, domain IV N288_00740 SM01403 N288_00740 N288_00760 SM01382 N288_00760 N288_00760 SM01383 N288_00760 N288_00775 SM00322 K homology RNA-binding domain N288_00795 SM01374 N288_00795 N288_00800 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. N288_00860 SM00316 Ribosomal protein S1-like RNA-binding domain N288_00880 SM00662 RNA polymerases D N288_00895 SM00382 ATPases associated with a variety of cellular activities N288_00900 SM00382 ATPases associated with a variety of cellular activities N288_00930 SM00646 N288_00930 N288_00950 SM01251 N288_00950 N288_01070 SM00530 Helix-turn-helix XRE-family like proteins N288_01085 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain N288_01125 SM00855 Phosphoglycerate mutase family N288_01220 SM00046 Diacylglycerol kinase catalytic domain (presumed) N288_01255 SM00836 DALR anticodon binding domain N288_01255 SM01016 Arginyl tRNA synthetase N terminal dom N288_01290 SM00382 ATPases associated with a variety of cellular activities N288_01320 SM00855 Phosphoglycerate mutase family N288_01345 SM00855 Phosphoglycerate mutase family N288_01375 SM00354 helix_turn _helix lactose operon repressor N288_01415 SM00363 S4 RNA-binding domain N288_01475 SM00487 DEAD-like helicases superfamily N288_01475 SM00490 helicase superfamily c-terminal domain N288_01510 SM01005 Alanine racemase, C-terminal domain N288_01540 SM00331 Sigma factor PP2C-like phosphatases N288_01540 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain N288_01560 SM00331 Sigma factor PP2C-like phosphatases N288_01565 SM00316 Ribosomal protein S1-like RNA-binding domain N288_01565 SM00732 Likely ribonuclease with RNase H fold. N288_01575 SM00731 SprT homologues. N288_01660 SM01001 AIR carboxylase N288_01670 SM00998 Adenylosuccinate lyase C-terminus N288_01685 SM01211 N288_01685 N288_01710 SM00798 AICARFT/IMPCHase bienzyme N288_01710 SM00851 MGS-like domain N288_01715 SM01209 N288_01715 N288_01715 SM01210 N288_01715 N288_01755 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N288_01755 SM00292 breast cancer carboxy-terminal domain N288_01755 SM00532 Ligase N family N288_01830 SM00845 GatB domain N288_01855 SM01207 N288_01855 N288_01890 SM00344 helix_turn_helix ASNC type N288_01965 SM00046 Diacylglycerol kinase catalytic domain (presumed) N288_02050 SM01240 N288_02050 N288_02090 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_02095 SM00487 DEAD-like helicases superfamily N288_02095 SM00490 helicase superfamily c-terminal domain N288_02100 SM00342 helix_turn_helix, arabinose operon control protein N288_02105 SM00478 endonuclease III N288_02125 SM00354 helix_turn _helix lactose operon repressor N288_02165 SM00829 Enoylreductase N288_02170 SM00342 helix_turn_helix, arabinose operon control protein N288_02170 SM00448 cheY-homologous receiver domain N288_02175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_02195 SM01038 Beta galactosidase small chain N288_02210 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_02210 SM00895 N288_02210 N288_02250 SM00382 ATPases associated with a variety of cellular activities N288_02295 SM01266 N288_02295 N288_02315 SM00448 cheY-homologous receiver domain N288_02315 SM00862 Transcriptional regulatory protein, C terminal N288_02320 SM00387 Histidine kinase-like ATPases N288_02320 SM00388 His Kinase A (phosphoacceptor) domain N288_02325 SM00829 Enoylreductase N288_02330 SM00257 Lysin motif N288_02335 SM00829 Enoylreductase N288_02390 SM00530 Helix-turn-helix XRE-family like proteins N288_02405 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_02470 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_02525 SM01060 N288_02525 N288_02530 SM00267 diguanylate cyclase N288_02535 SM00357 Cold shock protein domain N288_02625 SM00710 Parallel beta-helix repeats N288_02695 SM00052 Putative diguanylate phosphodiesterase N288_02695 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N288_02695 SM00091 PAS domain N288_02695 SM00267 diguanylate cyclase N288_02700 SM00422 helix_turn_helix, mercury resistance N288_02720 SM00327 von Willebrand factor (vWF) type A domain N288_02820 SM00382 ATPases associated with a variety of cellular activities N288_02830 SM00387 Histidine kinase-like ATPases N288_02835 SM00421 helix_turn_helix, Lux Regulon N288_02835 SM00448 cheY-homologous receiver domain N288_02850 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_02900 SM00342 helix_turn_helix, arabinose operon control protein N288_02940 SM00530 Helix-turn-helix XRE-family like proteins N288_02950 SM00382 ATPases associated with a variety of cellular activities N288_02985 SM00855 Phosphoglycerate mutase family N288_03005 SM00382 ATPases associated with a variety of cellular activities N288_03045 SM00387 Histidine kinase-like ATPases N288_03045 SM00388 His Kinase A (phosphoacceptor) domain N288_03050 SM00448 cheY-homologous receiver domain N288_03050 SM00862 Transcriptional regulatory protein, C terminal N288_03090 SM00382 ATPases associated with a variety of cellular activities N288_03095 SM00382 ATPases associated with a variety of cellular activities N288_03120 SM00344 helix_turn_helix ASNC type N288_03175 SM00487 DEAD-like helicases superfamily N288_03175 SM00490 helicase superfamily c-terminal domain N288_03265 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain N288_03265 SM01232 N288_03265 N288_03300 SM00387 Histidine kinase-like ATPases N288_03305 SM00421 helix_turn_helix, Lux Regulon N288_03305 SM00448 cheY-homologous receiver domain N288_03330 SM00382 ATPases associated with a variety of cellular activities N288_03540 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain N288_03540 SM00437 Bacterial DNA topoisomerase I DNA-binding domain N288_03540 SM00493 N288_03540 N288_03625 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_03650 SM00530 Helix-turn-helix XRE-family like proteins N288_03680 SM00530 Helix-turn-helix XRE-family like proteins N288_03685 SM00422 helix_turn_helix, mercury resistance N288_03720 SM00052 Putative diguanylate phosphodiesterase N288_03720 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N288_03720 SM00091 PAS domain N288_03720 SM00267 diguanylate cyclase N288_03725 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_03725 SM00866 N288_03725 N288_03755 SM00849 Metallo-beta-lactamase superfamily N288_03765 SM00226 Low molecular weight phosphatase family N288_03845 SM00871 Bacterial transcription activator, effector binding domain N288_03850 SM00829 Enoylreductase N288_03915 SM00478 endonuclease III N288_03950 SM00382 ATPases associated with a variety of cellular activities N288_03985 SM00382 ATPases associated with a variety of cellular activities N288_04000 SM00927 DNA mismatch repair enzyme MutH N288_04015 SM00530 Helix-turn-helix XRE-family like proteins N288_04035 SM00487 DEAD-like helicases superfamily N288_04035 SM00490 helicase superfamily c-terminal domain N288_04110 SM00382 ATPases associated with a variety of cellular activities N288_04140 SM00448 cheY-homologous receiver domain N288_04145 SM00382 ATPases associated with a variety of cellular activities N288_04155 SM00387 Histidine kinase-like ATPases N288_04155 SM00388 His Kinase A (phosphoacceptor) domain N288_04215 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_04225 SM00226 Low molecular weight phosphatase family N288_04230 SM00195 Dual specificity phosphatase, catalytic domain N288_04250 SM00387 Histidine kinase-like ATPases N288_04250 SM00388 His Kinase A (phosphoacceptor) domain N288_04335 SM01321 N288_04335 N288_04350 SM00382 ATPases associated with a variety of cellular activities N288_04370 SM00267 diguanylate cyclase N288_04475 SM00894 Excalibur calcium-binding domain N288_04480 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N288_04480 SM00267 diguanylate cyclase N288_04515 SM00052 Putative diguanylate phosphodiesterase N288_04520 SM00267 diguanylate cyclase N288_04530 SM00342 helix_turn_helix, arabinose operon control protein N288_04530 SM00871 Bacterial transcription activator, effector binding domain N288_04675 SM00860 SMI1 / KNR4 family N288_04685 SM00860 SMI1 / KNR4 family N288_04710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_04800 SM00357 Cold shock protein domain N288_04850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_04850 SM00387 Histidine kinase-like ATPases N288_04850 SM00388 His Kinase A (phosphoacceptor) domain N288_04855 SM00448 cheY-homologous receiver domain N288_04855 SM00862 Transcriptional regulatory protein, C terminal N288_04925 SM00091 PAS domain N288_04925 SM00387 Histidine kinase-like ATPases N288_04930 SM00448 cheY-homologous receiver domain N288_04940 SM00919 Malic enzyme, NAD binding domain N288_04940 SM01274 N288_04940 N288_04960 SM00267 diguanylate cyclase N288_04990 SM00382 ATPases associated with a variety of cellular activities N288_04995 SM00382 ATPases associated with a variety of cellular activities N288_05005 SM00062 Bacterial periplasmic substrate-binding proteins N288_05005 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N288_05030 SM00382 ATPases associated with a variety of cellular activities N288_05085 SM00387 Histidine kinase-like ATPases N288_05115 SM01217 N288_05115 N288_05140 SM00354 helix_turn _helix lactose operon repressor N288_05180 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_05245 SM00342 helix_turn_helix, arabinose operon control protein N288_05260 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N288_05270 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_05275 SM00052 Putative diguanylate phosphodiesterase N288_05275 SM00267 diguanylate cyclase N288_05305 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_05305 SM00895 N288_05305 N288_05360 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_05385 SM00062 Bacterial periplasmic substrate-binding proteins N288_05385 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N288_05395 SM00382 ATPases associated with a variety of cellular activities N288_05415 SM01022 N288_05415 N288_05430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_05435 SM00387 Histidine kinase-like ATPases N288_05490 SM00849 Metallo-beta-lactamase superfamily N288_05495 SM00344 helix_turn_helix ASNC type N288_05525 SM00382 ATPases associated with a variety of cellular activities N288_05560 SM00994 ClpX C4-type zinc finger N288_05620 SM00822 N288_05620 N288_05655 SM00478 endonuclease III N288_05655 SM00525 N288_05655 N288_05685 SM00382 ATPases associated with a variety of cellular activities N288_05695 SM00382 ATPases associated with a variety of cellular activities N288_05700 SM00382 ATPases associated with a variety of cellular activities N288_05735 SM00382 ATPases associated with a variety of cellular activities N288_05910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_05915 SM00342 helix_turn_helix, arabinose operon control protein N288_05915 SM00448 cheY-homologous receiver domain N288_05935 SM00873 B3/4 domain N288_05940 SM00567 E-Z type HEAT repeats N288_05965 SM00763 PrkA AAA domain N288_06010 SM00938 Nitrogen regulatory protein P-II N288_06045 SM00387 Histidine kinase-like ATPases N288_06045 SM00388 His Kinase A (phosphoacceptor) domain N288_06050 SM00267 diguanylate cyclase N288_06050 SM00448 cheY-homologous receiver domain N288_06070 SM00448 cheY-homologous receiver domain N288_06075 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N288_06075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_06075 SM00387 Histidine kinase-like ATPases N288_06075 SM00388 His Kinase A (phosphoacceptor) domain N288_06075 SM00448 cheY-homologous receiver domain N288_06115 SM00448 cheY-homologous receiver domain N288_06115 SM00862 Transcriptional regulatory protein, C terminal N288_06120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_06120 SM00387 Histidine kinase-like ATPases N288_06120 SM00388 His Kinase A (phosphoacceptor) domain N288_06135 SM00354 helix_turn _helix lactose operon repressor N288_06145 SM01350 N288_06145 N288_06235 SM00421 helix_turn_helix, Lux Regulon N288_06235 SM00448 cheY-homologous receiver domain N288_06280 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_06300 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_06390 SM00448 cheY-homologous receiver domain N288_06390 SM00850 LytTr DNA-binding domain N288_06395 SM00382 ATPases associated with a variety of cellular activities N288_06435 SM00530 Helix-turn-helix XRE-family like proteins N288_06450 SM00448 cheY-homologous receiver domain N288_06450 SM00862 Transcriptional regulatory protein, C terminal N288_06455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_06455 SM00387 Histidine kinase-like ATPases N288_06455 SM00388 His Kinase A (phosphoacceptor) domain N288_06465 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_06465 SM01091 Transporter associated domain N288_06470 SM00422 helix_turn_helix, mercury resistance N288_06495 SM00387 Histidine kinase-like ATPases N288_06495 SM00388 His Kinase A (phosphoacceptor) domain N288_06500 SM00530 Helix-turn-helix XRE-family like proteins N288_06595 SM00382 ATPases associated with a variety of cellular activities N288_06600 SM00382 ATPases associated with a variety of cellular activities N288_06625 SM00382 ATPases associated with a variety of cellular activities N288_06705 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_06730 SM00382 ATPases associated with a variety of cellular activities N288_06780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_06830 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_06865 SM00382 ATPases associated with a variety of cellular activities N288_06885 SM00014 Acid phosphatase homologues N288_06905 SM00946 Prolyl-tRNA synthetase, C-terminal N288_06910 SM00091 PAS domain N288_06910 SM00387 Histidine kinase-like ATPases N288_06910 SM00388 His Kinase A (phosphoacceptor) domain N288_06920 SM00155 Phospholipase D. Active site motifs. N288_06935 SM00327 von Willebrand factor (vWF) type A domain N288_06975 SM00387 Histidine kinase-like ATPases N288_06980 SM00421 helix_turn_helix, Lux Regulon N288_06980 SM00448 cheY-homologous receiver domain N288_07025 SM00849 Metallo-beta-lactamase superfamily N288_07060 SM00382 ATPases associated with a variety of cellular activities N288_07065 SM00530 Helix-turn-helix XRE-family like proteins N288_07090 SM00914 N288_07090 N288_07125 SM00028 Tetratricopeptide repeats N288_07125 SM01043 Bacterial transcriptional activator domain N288_07145 SM00382 ATPases associated with a variety of cellular activities N288_07150 SM00382 ATPases associated with a variety of cellular activities N288_07180 SM00822 N288_07180 N288_07285 SM00052 Putative diguanylate phosphodiesterase N288_07285 SM00091 PAS domain N288_07285 SM00267 diguanylate cyclase N288_07285 SM00897 FIST N domain N288_07285 SM01204 N288_07285 N288_07300 SM00421 helix_turn_helix, Lux Regulon N288_07300 SM00448 cheY-homologous receiver domain N288_07305 SM00382 ATPases associated with a variety of cellular activities N288_07355 SM00642 Alpha-amylase domain N288_07380 SM00642 Alpha-amylase domain N288_07390 SM00354 helix_turn _helix lactose operon repressor N288_07410 SM00316 Ribosomal protein S1-like RNA-binding domain N288_07465 SM00852 Probable molybdopterin binding domain N288_07475 SM00859 Semialdehyde dehydrogenase, NAD binding domain N288_07495 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain N288_07500 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N288_07520 SM00382 ATPases associated with a variety of cellular activities N288_07520 SM01086 C-terminal, D2-small domain, of ClpB protein N288_07565 SM00825 Beta-ketoacyl synthase N288_07575 SM00382 ATPases associated with a variety of cellular activities N288_07580 SM00382 ATPases associated with a variety of cellular activities N288_07630 SM00382 ATPases associated with a variety of cellular activities N288_07635 SM00382 ATPases associated with a variety of cellular activities N288_07665 SM00155 Phospholipase D. Active site motifs. N288_07710 SM01118 N288_07710 N288_07720 SM00954 Region found in RelA / SpoT proteins N288_07740 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_07740 SM00924 MgtE intracellular N domain N288_07810 SM00822 N288_07810 N288_07860 SM00829 Enoylreductase N288_07920 SM00382 ATPases associated with a variety of cellular activities N288_07965 SM00382 ATPases associated with a variety of cellular activities N288_07980 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N288_07990 SM00382 ATPases associated with a variety of cellular activities N288_08005 SM00052 Putative diguanylate phosphodiesterase N288_08005 SM00267 diguanylate cyclase N288_08110 SM00244 prohibitin homologues N288_08135 SM00138 Methyltransferase, chemotaxis proteins N288_08135 SM00387 Histidine kinase-like ATPases N288_08135 SM00388 His Kinase A (phosphoacceptor) domain N288_08195 SM00382 ATPases associated with a variety of cellular activities N288_08215 SM00257 Lysin motif N288_08235 SM00642 Alpha-amylase domain N288_08240 SM00642 Alpha-amylase domain N288_08260 SM00052 Putative diguanylate phosphodiesterase N288_08275 SM00382 ATPases associated with a variety of cellular activities N288_08345 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_08355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_08355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_08365 SM00091 PAS domain N288_08365 SM00387 Histidine kinase-like ATPases N288_08365 SM00388 His Kinase A (phosphoacceptor) domain N288_08370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_08405 SM01007 Class II Aldolase and Adducin N-terminal domain N288_08440 SM00387 Histidine kinase-like ATPases N288_08440 SM00388 His Kinase A (phosphoacceptor) domain N288_08450 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_08460 SM00387 Histidine kinase-like ATPases N288_08460 SM00388 His Kinase A (phosphoacceptor) domain N288_08465 SM00382 ATPases associated with a variety of cellular activities N288_08465 SM01086 C-terminal, D2-small domain, of ClpB protein N288_08515 SM00382 ATPases associated with a variety of cellular activities N288_08595 SM00260 Two component signalling adaptor domain N288_08595 SM00448 cheY-homologous receiver domain N288_08620 SM00257 Lysin motif N288_08645 SM00052 Putative diguanylate phosphodiesterase N288_08665 SM00849 Metallo-beta-lactamase superfamily N288_08710 SM00382 ATPases associated with a variety of cellular activities N288_08715 SM00382 ATPases associated with a variety of cellular activities N288_08745 SM00849 Metallo-beta-lactamase superfamily N288_08790 SM00861 Transketolase, pyrimidine binding domain N288_08885 SM00838 Elongation factor G C-terminus N288_08920 SM00670 Large family of predicted nucleotide-binding domains N288_08940 SM00878 Biotin carboxylase C-terminal domain N288_09000 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_09075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N288_09100 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains N288_09110 SM00878 Biotin carboxylase C-terminal domain N288_09160 SM00740 N288_09160 N288_09165 SM00740 N288_09165 N288_09235 SM00842 Cell division protein FtsA N288_09240 SM00864 Tubulin/FtsZ family, GTPase domain N288_09240 SM00865 Tubulin/FtsZ family, C-terminal domain N288_09285 SM00363 S4 RNA-binding domain N288_09310 SM00363 S4 RNA-binding domain N288_09335 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain N288_09340 SM00851 MGS-like domain N288_09340 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N288_09355 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family N288_09375 SM00831 Cation transporter/ATPase, N-terminus N288_09390 SM00072 Guanylate kinase homologues. N288_09395 SM01409 N288_09395 N288_09405 SM00487 DEAD-like helicases superfamily N288_09405 SM00490 helicase superfamily c-terminal domain N288_09430 SM00331 Sigma factor PP2C-like phosphatases N288_09430 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain N288_09435 SM00220 Serine/Threonine protein kinases, catalytic domain N288_09435 SM00740 N288_09435 N288_09450 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain N288_09470 SM01120 N288_09470 N288_09470 SM01121 N288_09470 N288_09475 SM00487 DEAD-like helicases superfamily N288_09475 SM00490 helicase superfamily c-terminal domain N288_09480 SM00420 helix_turn_helix, Deoxyribose operon repressor N288_09490 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. N288_09495 SM00822 N288_09495 N288_09510 SM00358 Double-stranded RNA binding motif N288_09510 SM00535 Ribonuclease III family N288_09515 SM00968 SMC proteins Flexible Hinge Domain N288_09520 SM00382 ATPases associated with a variety of cellular activities N288_09520 SM00962 SRP54-type protein, GTPase domain N288_09520 SM00963 SRP54-type protein, helical bundle domain N288_09530 SM00382 ATPases associated with a variety of cellular activities N288_09545 SM00382 ATPases associated with a variety of cellular activities N288_09560 SM00327 von Willebrand factor (vWF) type A domain N288_09570 SM00382 ATPases associated with a variety of cellular activities N288_09570 SM00962 SRP54-type protein, GTPase domain N288_09570 SM00963 SRP54-type protein, helical bundle domain N288_09640 SM00881 CoA binding domain N288_09650 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain N288_09650 SM00437 Bacterial DNA topoisomerase I DNA-binding domain N288_09650 SM00493 N288_09650 N288_09670 SM00382 ATPases associated with a variety of cellular activities N288_09670 SM01086 C-terminal, D2-small domain, of ClpB protein N288_09710 SM00382 ATPases associated with a variety of cellular activities N288_09765 SM00448 cheY-homologous receiver domain N288_09800 SM00382 ATPases associated with a variety of cellular activities N288_09800 SM00962 SRP54-type protein, GTPase domain N288_09810 SM00448 cheY-homologous receiver domain N288_09815 SM00073 Histidine Phosphotransfer domain N288_09815 SM00260 Two component signalling adaptor domain N288_09815 SM00387 Histidine kinase-like ATPases N288_09815 SM01231 N288_09815 N288_09820 SM00260 Two component signalling adaptor domain N288_09900 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N288_09920 SM00479 N288_09920 N288_09920 SM00481 DNA polymerase alpha chain like domain N288_09930 SM00316 Ribosomal protein S1-like RNA-binding domain N288_09930 SM00322 K homology RNA-binding domain N288_09965 SM00904 Riboflavin kinase N288_09970 SM01387 N288_09970 N288_09975 SM00316 Ribosomal protein S1-like RNA-binding domain N288_09975 SM00322 K homology RNA-binding domain N288_10020 SM00859 Semialdehyde dehydrogenase, NAD binding domain N288_10030 SM01130 N288_10030 N288_10035 SM00849 Metallo-beta-lactamase superfamily N288_10055 SM00382 ATPases associated with a variety of cellular activities N288_10055 SM00843 N288_10055 N288_10065 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_10065 SM00866 N288_10065 N288_10075 SM00382 ATPases associated with a variety of cellular activities N288_10090 SM00267 diguanylate cyclase N288_10130 SM00852 Probable molybdopterin binding domain N288_10135 SM00382 ATPases associated with a variety of cellular activities N288_10140 SM00322 K homology RNA-binding domain N288_10140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_10175 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_10200 SM00533 DNA-binding domain of DNA mismatch repair MUTS family N288_10200 SM00534 ATPase domain of DNA mismatch repair MUTS family N288_10205 SM00853 MutL C terminal dimerisation domain N288_10205 SM01340 N288_10205 N288_10210 SM00530 Helix-turn-helix XRE-family like proteins N288_10255 SM00382 ATPases associated with a variety of cellular activities N288_10275 SM00422 helix_turn_helix, mercury resistance N288_10280 SM01230 N288_10280 N288_10290 SM00257 Lysin motif N288_10290 SM00646 N288_10290 N288_10315 SM00530 Helix-turn-helix XRE-family like proteins N288_10345 SM00857 Resolvase, N terminal domain N288_10355 SM00861 Transketolase, pyrimidine binding domain N288_10380 SM00382 ATPases associated with a variety of cellular activities N288_10385 SM00382 ATPases associated with a variety of cellular activities N288_10400 SM00448 cheY-homologous receiver domain N288_10530 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_10530 SM00866 N288_10530 N288_10605 SM00448 cheY-homologous receiver domain N288_10605 SM00862 Transcriptional regulatory protein, C terminal N288_10610 SM00387 Histidine kinase-like ATPases N288_10610 SM00388 His Kinase A (phosphoacceptor) domain N288_10670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_10670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_10675 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_10685 SM00382 ATPases associated with a variety of cellular activities N288_10695 SM00342 helix_turn_helix, arabinose operon control protein N288_10705 SM00710 Parallel beta-helix repeats N288_10780 SM00354 helix_turn _helix lactose operon repressor N288_10790 SM00858 N288_10790 N288_10810 SM00822 N288_10810 N288_10880 SM00357 Cold shock protein domain N288_10955 SM00257 Lysin motif N288_10970 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N288_10970 SM00091 PAS domain N288_10970 SM00387 Histidine kinase-like ATPases N288_10970 SM00388 His Kinase A (phosphoacceptor) domain N288_10995 SM00487 DEAD-like helicases superfamily N288_10995 SM00488 N288_10995 N288_10995 SM00491 N288_10995 N288_11045 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain N288_11050 SM00530 Helix-turn-helix XRE-family like proteins N288_11080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N288_11080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_11100 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_11175 SM00267 diguanylate cyclase N288_11190 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_11500 SM00382 ATPases associated with a variety of cellular activities N288_11510 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N288_11520 SM00861 Transketolase, pyrimidine binding domain N288_11545 SM00903 Flavin reductase like domain N288_11605 SM00450 Rhodanese Homology Domain N288_11615 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_11625 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_11720 SM00382 ATPases associated with a variety of cellular activities N288_11750 SM00387 Histidine kinase-like ATPases N288_11750 SM00388 His Kinase A (phosphoacceptor) domain N288_11755 SM01207 N288_11755 N288_11780 SM00636 N288_11780 N288_11795 SM00881 CoA binding domain N288_11800 SM00387 Histidine kinase-like ATPases N288_11800 SM00433 TopoisomeraseII N288_11805 SM00434 DNA Topoisomerase IV N288_11845 SM00014 Acid phosphatase homologues N288_11880 SM00382 ATPases associated with a variety of cellular activities N288_11895 SM00450 Rhodanese Homology Domain N288_12020 SM00490 helicase superfamily c-terminal domain N288_12090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_12095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_12110 SM00091 PAS domain N288_12120 SM00382 ATPases associated with a variety of cellular activities N288_12140 SM00257 Lysin motif N288_12140 SM00636 N288_12140 N288_12155 SM00479 N288_12155 N288_12195 SM00257 Lysin motif N288_12275 SM00533 DNA-binding domain of DNA mismatch repair MUTS family N288_12275 SM00534 ATPase domain of DNA mismatch repair MUTS family N288_12295 SM00382 ATPases associated with a variety of cellular activities N288_12450 SM00861 Transketolase, pyrimidine binding domain N288_12480 SM01018 B12 binding domain N288_12490 SM00796 Allophanate hydrolase subunit 1 N288_12495 SM00797 Allophanate hydrolase subunit 2 N288_12530 SM00849 Metallo-beta-lactamase superfamily N288_12550 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_12550 SM01091 Transporter associated domain N288_12620 SM00850 LytTr DNA-binding domain N288_12625 SM00448 cheY-homologous receiver domain N288_12630 SM00387 Histidine kinase-like ATPases N288_12710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_12770 SM00382 ATPases associated with a variety of cellular activities N288_12790 SM00530 Helix-turn-helix XRE-family like proteins N288_12795 SM00480 DNA polymerase III beta subunit N288_12880 SM00382 ATPases associated with a variety of cellular activities N288_12895 SM00387 Histidine kinase-like ATPases N288_12895 SM00388 His Kinase A (phosphoacceptor) domain N288_12935 SM00563 Phosphate acyltransferases N288_13030 SM01060 N288_13030 N288_13060 SM00829 Enoylreductase N288_13080 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N288_13080 SM00220 Serine/Threonine protein kinases, catalytic domain N288_13080 SM00387 Histidine kinase-like ATPases N288_13080 SM00388 His Kinase A (phosphoacceptor) domain N288_13090 SM00448 cheY-homologous receiver domain N288_13090 SM00862 Transcriptional regulatory protein, C terminal N288_13110 SM00422 helix_turn_helix, mercury resistance N288_13150 SM00487 DEAD-like helicases superfamily N288_13150 SM00490 helicase superfamily c-terminal domain N288_13315 SM00327 von Willebrand factor (vWF) type A domain N288_13320 SM00382 ATPases associated with a variety of cellular activities N288_13365 SM00421 helix_turn_helix, Lux Regulon N288_13365 SM00448 cheY-homologous receiver domain N288_13370 SM00387 Histidine kinase-like ATPases N288_13450 SM00387 Histidine kinase-like ATPases N288_13450 SM00388 His Kinase A (phosphoacceptor) domain N288_13480 SM00382 ATPases associated with a variety of cellular activities N288_13525 SM01091 Transporter associated domain N288_13685 SM00984 UDP binding domain N288_13775 SM00342 helix_turn_helix, arabinose operon control protein N288_13775 SM00871 Bacterial transcription activator, effector binding domain N288_13805 SM00382 ATPases associated with a variety of cellular activities N288_13810 SM00382 ATPases associated with a variety of cellular activities N288_13815 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_13825 SM00387 Histidine kinase-like ATPases N288_13825 SM00388 His Kinase A (phosphoacceptor) domain N288_13865 SM00871 Bacterial transcription activator, effector binding domain N288_13880 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_13880 SM00895 N288_13880 N288_13910 SM00422 helix_turn_helix, mercury resistance N288_13965 SM00835 Cupin N288_13990 SM00530 Helix-turn-helix XRE-family like proteins N288_13995 SM00530 Helix-turn-helix XRE-family like proteins N288_14065 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. N288_14110 SM00855 Phosphoglycerate mutase family N288_14165 SM00354 helix_turn _helix lactose operon repressor N288_14215 SM00849 Metallo-beta-lactamase superfamily N288_14335 SM00530 Helix-turn-helix XRE-family like proteins N288_14365 SM00833 Cobalamin synthesis protein cobW C-terminal domain N288_14475 SM00257 Lysin motif N288_14510 SM00382 ATPases associated with a variety of cellular activities N288_14515 SM00387 Histidine kinase-like ATPases N288_14520 SM00448 cheY-homologous receiver domain N288_14520 SM00862 Transcriptional regulatory protein, C terminal N288_14560 SM01060 N288_14560 N288_14570 SM00342 helix_turn_helix, arabinose operon control protein N288_14570 SM00871 Bacterial transcription activator, effector binding domain N288_14590 SM00387 Histidine kinase-like ATPases N288_14590 SM00388 His Kinase A (phosphoacceptor) domain N288_14595 SM00448 cheY-homologous receiver domain N288_14595 SM00862 Transcriptional regulatory protein, C terminal N288_14625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_14625 SM00387 Histidine kinase-like ATPases N288_14625 SM00388 His Kinase A (phosphoacceptor) domain N288_14630 SM00448 cheY-homologous receiver domain N288_14630 SM00862 Transcriptional regulatory protein, C terminal N288_14645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_14645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_14710 SM00530 Helix-turn-helix XRE-family like proteins N288_14920 SM00448 cheY-homologous receiver domain N288_14925 SM00387 Histidine kinase-like ATPases N288_14960 SM00460 Transglutaminase/protease-like homologues N288_15000 SM00342 helix_turn_helix, arabinose operon control protein N288_15060 SM00465 GIY-YIG type nucleases (URI domain) N288_15105 SM00387 Histidine kinase-like ATPases N288_15105 SM00388 His Kinase A (phosphoacceptor) domain N288_15210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_15230 SM00342 helix_turn_helix, arabinose operon control protein N288_15235 SM01091 Transporter associated domain N288_15245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_15245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_15285 SM00813 Alpha-L-arabinofuranosidase C-terminus N288_15290 SM01207 N288_15290 N288_15405 SM00382 ATPases associated with a variety of cellular activities N288_15410 SM00382 ATPases associated with a variety of cellular activities N288_15435 SM00344 helix_turn_helix ASNC type N288_15455 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_15470 SM00849 Metallo-beta-lactamase superfamily N288_15495 SM00422 helix_turn_helix, mercury resistance N288_15525 SM00052 Putative diguanylate phosphodiesterase N288_15525 SM00091 PAS domain N288_15525 SM00267 diguanylate cyclase N288_15530 SM00382 ATPases associated with a variety of cellular activities N288_15570 SM00849 Metallo-beta-lactamase superfamily N288_15585 SM00062 Bacterial periplasmic substrate-binding proteins N288_15595 SM00382 ATPases associated with a variety of cellular activities N288_15650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_15695 SM00420 helix_turn_helix, Deoxyribose operon repressor N288_15695 SM01134 N288_15695 N288_15735 SM00342 helix_turn_helix, arabinose operon control protein N288_15775 SM00331 Sigma factor PP2C-like phosphatases N288_15775 SM00448 cheY-homologous receiver domain N288_15780 SM00138 Methyltransferase, chemotaxis proteins N288_15785 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N288_15785 SM00387 Histidine kinase-like ATPases N288_15785 SM00388 His Kinase A (phosphoacceptor) domain N288_15785 SM00448 cheY-homologous receiver domain N288_15795 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_15795 SM00924 MgtE intracellular N domain N288_15830 SM00387 Histidine kinase-like ATPases N288_15830 SM00388 His Kinase A (phosphoacceptor) domain N288_15870 SM00357 Cold shock protein domain N288_15875 SM00487 DEAD-like helicases superfamily N288_15875 SM00490 helicase superfamily c-terminal domain N288_15880 SM00357 Cold shock protein domain N288_15895 SM00014 Acid phosphatase homologues N288_15900 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen N288_15920 SM00052 Putative diguanylate phosphodiesterase N288_16020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_16050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_16050 SM00387 Histidine kinase-like ATPases N288_16050 SM00388 His Kinase A (phosphoacceptor) domain N288_16055 SM00448 cheY-homologous receiver domain N288_16055 SM00862 Transcriptional regulatory protein, C terminal N288_16080 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_16085 SM00833 Cobalamin synthesis protein cobW C-terminal domain N288_16095 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N288_16095 SM00245 tail specific protease N288_16190 SM00382 ATPases associated with a variety of cellular activities N288_16210 SM00882 Coenzyme A transferase N288_16215 SM00882 Coenzyme A transferase N288_16235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_16450 SM00567 E-Z type HEAT repeats N288_16450 SM00932 Scaffold protein Nfu/NifU N terminal N288_16455 SM00382 ATPases associated with a variety of cellular activities N288_16460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_16520 SM00529 Helix-turn-helix diphteria tox regulatory element N288_16525 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain N288_16525 SM00437 Bacterial DNA topoisomerase I DNA-binding domain N288_16525 SM00493 N288_16525 N288_16540 SM00382 ATPases associated with a variety of cellular activities N288_16560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_16565 SM00357 Cold shock protein domain N288_16610 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs N288_16610 SM00475 5'-3' exonuclease N288_16620 SM00450 Rhodanese Homology Domain N288_16720 SM00491 N288_16720 N288_16730 SM00981 N288_16730 N288_16770 SM00487 DEAD-like helicases superfamily N288_16770 SM00490 helicase superfamily c-terminal domain N288_16845 SM00478 endonuclease III N288_16845 SM00525 N288_16845 N288_16875 SM00479 N288_16875 N288_16875 SM00487 DEAD-like helicases superfamily N288_16875 SM00491 N288_16875 N288_16925 SM00851 MGS-like domain N288_16980 SM00914 N288_16980 N288_16985 SM00028 Tetratricopeptide repeats N288_17030 SM00138 Methyltransferase, chemotaxis proteins N288_17035 SM00562 N288_17035 N288_17065 SM00411 bacterial (prokaryotic) histone like domain N288_17120 SM01240 N288_17120 N288_17125 SM00316 Ribosomal protein S1-like RNA-binding domain N288_17130 SM00563 Phosphate acyltransferases N288_17165 SM00870 N288_17165 N288_17175 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N288_17185 SM00422 helix_turn_helix, mercury resistance N288_17215 SM00257 Lysin motif N288_17225 SM00487 DEAD-like helicases superfamily N288_17225 SM00490 helicase superfamily c-terminal domain N288_17280 SM00257 Lysin motif N288_17295 SM00091 PAS domain N288_17295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_17295 SM00387 Histidine kinase-like ATPases N288_17295 SM00388 His Kinase A (phosphoacceptor) domain N288_17300 SM00448 cheY-homologous receiver domain N288_17300 SM00862 Transcriptional regulatory protein, C terminal N288_17320 SM00363 S4 RNA-binding domain N288_17430 SM00387 Histidine kinase-like ATPases N288_17440 SM00936 Penicillin-binding protein 5, C-terminal domain N288_17445 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain N288_17525 SM00882 Coenzyme A transferase N288_17530 SM00882 Coenzyme A transferase N288_17590 SM00849 Metallo-beta-lactamase superfamily N288_17615 SM00855 Phosphoglycerate mutase family N288_17630 SM01350 N288_17630 N288_17645 SM00260 Two component signalling adaptor domain N288_17680 SM00382 ATPases associated with a variety of cellular activities N288_17695 SM00062 Bacterial periplasmic substrate-binding proteins N288_17695 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N288_17725 SM00861 Transketolase, pyrimidine binding domain N288_17745 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N288_17755 SM00091 PAS domain N288_17755 SM00382 ATPases associated with a variety of cellular activities N288_17775 SM00448 cheY-homologous receiver domain N288_17785 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N288_17800 SM00363 S4 RNA-binding domain N288_17805 SM00861 Transketolase, pyrimidine binding domain N288_17840 SM00878 Biotin carboxylase C-terminal domain N288_17850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_17895 SM00382 ATPases associated with a variety of cellular activities N288_17915 SM00841 Elongation factor P, C-terminal N288_17915 SM01185 N288_17915 N288_17970 SM00450 Rhodanese Homology Domain N288_17995 SM00487 DEAD-like helicases superfamily N288_17995 SM00490 helicase superfamily c-terminal domain N288_18050 SM00382 ATPases associated with a variety of cellular activities N288_18065 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_18080 SM00849 Metallo-beta-lactamase superfamily N288_18105 SM00257 Lysin motif N288_18105 SM00631 N288_18105 N288_18195 SM00382 ATPases associated with a variety of cellular activities N288_18250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_18250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_18285 SM00382 ATPases associated with a variety of cellular activities N288_18295 SM00518 AP endonuclease family 2 N288_18300 SM00487 DEAD-like helicases superfamily N288_18300 SM00490 helicase superfamily c-terminal domain N288_18350 SM00400 zinc finger N288_18350 SM00493 N288_18350 N288_18365 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_18410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_18415 SM00322 K homology RNA-binding domain N288_18460 SM01133 N288_18460 N288_18465 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_18480 SM00271 DnaJ molecular chaperone homology domain N288_18500 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_18505 SM00838 Elongation factor G C-terminus N288_18540 SM00849 Metallo-beta-lactamase superfamily N288_18550 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N288_18570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_18580 SM01103 N288_18580 N288_18725 SM00732 Likely ribonuclease with RNase H fold. N288_18735 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain N288_18770 SM00028 Tetratricopeptide repeats N288_18795 SM00382 ATPases associated with a variety of cellular activities N288_18800 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains N288_18825 SM00287 Bacterial SH3 domain homologues N288_18825 SM00646 N288_18825 N288_18835 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_18835 SM00954 Region found in RelA / SpoT proteins N288_18885 SM01323 N288_18885 N288_18900 SM00382 ATPases associated with a variety of cellular activities N288_18905 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N288_18940 SM00257 Lysin motif N288_18985 SM01317 N288_18985 N288_19005 SM00316 Ribosomal protein S1-like RNA-binding domain N288_19105 SM00382 ATPases associated with a variety of cellular activities N288_19110 SM00382 ATPases associated with a variety of cellular activities N288_19115 SM01208 N288_19115 N288_19145 SM00327 von Willebrand factor (vWF) type A domain N288_19145 SM00635 Bacterial Ig-like domain 2 N288_19150 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N288_19150 SM00267 diguanylate cyclase N288_19175 SM00257 Lysin motif N288_19185 SM01004 Delta-aminolevulinic acid dehydratase N288_19215 SM00382 ATPases associated with a variety of cellular activities N288_19225 SM00062 Bacterial periplasmic substrate-binding proteins N288_19225 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N288_19235 SM00382 ATPases associated with a variety of cellular activities N288_19235 SM00464 Found in ATP-dependent protease La (LON) N288_19240 SM00382 ATPases associated with a variety of cellular activities N288_19245 SM00382 ATPases associated with a variety of cellular activities N288_19245 SM00994 ClpX C4-type zinc finger N288_19245 SM01086 C-terminal, D2-small domain, of ClpB protein N288_19270 SM01329 N288_19270 N288_19275 SM00917 LeuA allosteric (dimerisation) domain N288_19320 SM00909 Sporulation and spore germination N288_19325 SM00341 Helicase and RNase D C-terminal N288_19325 SM00487 DEAD-like helicases superfamily N288_19325 SM00490 helicase superfamily c-terminal domain N288_19325 SM00956 N288_19325 N288_19335 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_19340 SM00421 helix_turn_helix, Lux Regulon N288_19380 SM00465 GIY-YIG type nucleases (URI domain) N288_19395 SM00893 Electron transfer flavoprotein domain N288_19400 SM00893 Electron transfer flavoprotein domain N288_19425 SM00463 Small MutS-related domain N288_19425 SM00533 DNA-binding domain of DNA mismatch repair MUTS family N288_19425 SM00534 ATPase domain of DNA mismatch repair MUTS family N288_19430 SM00278 Helix-hairpin-helix DNA-binding motif class 1 N288_19430 SM00481 DNA polymerase alpha chain like domain N288_19430 SM00483 DNA polymerase X family N288_19450 SM00873 B3/4 domain N288_19450 SM00874 tRNA synthetase B5 domain N288_19450 SM00896 Ferredoxin-fold anticodon binding domain N288_19460 SM00967 RNA 2'-O ribose methyltransferase substrate binding N288_19510 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain N288_19520 SM00382 ATPases associated with a variety of cellular activities N288_19545 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N288_19560 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain N288_19560 SM01232 N288_19560 N288_19565 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs N288_19565 SM00474 3'-5' exonuclease N288_19565 SM00475 5'-3' exonuclease N288_19565 SM00482 DNA polymerase A domain N288_19570 SM00244 prohibitin homologues N288_19575 SM00244 prohibitin homologues N288_19580 SM00091 PAS domain N288_19580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_19580 SM00387 Histidine kinase-like ATPases N288_19580 SM00388 His Kinase A (phosphoacceptor) domain N288_19585 SM00448 cheY-homologous receiver domain N288_19585 SM00862 Transcriptional regulatory protein, C terminal N288_19600 SM01329 N288_19600 N288_19655 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_19660 SM00919 Malic enzyme, NAD binding domain N288_19660 SM01274 N288_19660 N288_19665 SM00481 DNA polymerase alpha chain like domain N288_19690 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_19700 SM00849 Metallo-beta-lactamase superfamily N288_19710 SM01002 Alanine dehydrogenase/PNT, C-terminal domain N288_19710 SM01003 Alanine dehydrogenase/PNT, N-terminal domain N288_19745 SM00852 Probable molybdopterin binding domain N288_19815 SM00981 N288_19815 N288_19845 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N288_19860 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N288_19860 SM00267 diguanylate cyclase N288_19870 SM00363 S4 RNA-binding domain N288_19870 SM01390 N288_19870 N288_19875 SM00363 S4 RNA-binding domain N288_19895 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_19920 SM00354 helix_turn _helix lactose operon repressor N288_19925 SM00830 Chorismate mutase type II N288_19930 SM00842 Cell division protein FtsA N288_19970 SM00382 ATPases associated with a variety of cellular activities N288_19970 SM00843 N288_19970 N288_20015 SM00849 Metallo-beta-lactamase superfamily N288_20045 SM00642 Alpha-amylase domain N288_20085 SM00382 ATPases associated with a variety of cellular activities N288_20095 SM00248 ankyrin repeats N288_20100 SM00363 S4 RNA-binding domain N288_20125 SM00450 Rhodanese Homology Domain N288_20150 SM00091 PAS domain N288_20150 SM00382 ATPases associated with a variety of cellular activities N288_20185 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_20305 SM00382 ATPases associated with a variety of cellular activities N288_20350 SM00155 Phospholipase D. Active site motifs. N288_20360 SM01234 N288_20360 N288_20365 SM00947 Carbonic anhydrase N288_20395 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N288_20455 SM00642 Alpha-amylase domain N288_20680 SM00091 PAS domain N288_20680 SM00382 ATPases associated with a variety of cellular activities N288_20685 SM00316 Ribosomal protein S1-like RNA-binding domain N288_20690 SM00530 Helix-turn-helix XRE-family like proteins N288_20700 SM00344 helix_turn_helix ASNC type N288_20735 SM01298 N288_20735 N288_20740 SM00479 N288_20740 N288_21015 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N288_21030 SM00052 Putative diguanylate phosphodiesterase N288_21055 SM00729 Elongator protein 3, MiaB family, Radical SAM N288_21090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_21130 SM00382 ATPases associated with a variety of cellular activities N288_21155 SM00382 ATPases associated with a variety of cellular activities N288_21155 SM00930 N288_21155 N288_21180 SM00493 N288_21180 N288_21250 SM00382 ATPases associated with a variety of cellular activities N288_21340 SM00479 N288_21340 N288_21345 SM00479 N288_21345 N288_21365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N288_21365 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N288_21395 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family N288_21420 SM00450 Rhodanese Homology Domain N288_21420 SM00849 Metallo-beta-lactamase superfamily N288_21425 SM00450 Rhodanese Homology Domain N288_21430 SM00450 Rhodanese Homology Domain N288_21470 SM00382 ATPases associated with a variety of cellular activities N288_21475 SM00382 ATPases associated with a variety of cellular activities N288_21480 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_21490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_21490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_21500 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_21510 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_21510 SM00382 ATPases associated with a variety of cellular activities N288_21515 SM00267 diguanylate cyclase N288_21530 SM00382 ATPases associated with a variety of cellular activities N288_21550 SM00028 Tetratricopeptide repeats N288_21550 SM00530 Helix-turn-helix XRE-family like proteins N288_21565 SM00316 Ribosomal protein S1-like RNA-binding domain N288_21565 SM00357 Cold shock protein domain N288_21565 SM00955 N288_21565 N288_21585 SM01192 N288_21585 N288_21585 SM01193 N288_21585 N288_21605 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N288_21675 SM00028 Tetratricopeptide repeats N288_21755 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_21755 SM00866 N288_21755 N288_21795 SM00382 ATPases associated with a variety of cellular activities N288_21800 SM00487 DEAD-like helicases superfamily N288_21800 SM00490 helicase superfamily c-terminal domain N288_21830 SM00382 ATPases associated with a variety of cellular activities N288_21830 SM00930 N288_21830 N288_21845 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) N288_21845 SM00091 PAS domain N288_21845 SM00387 Histidine kinase-like ATPases N288_21845 SM00388 His Kinase A (phosphoacceptor) domain N288_21850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_21885 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N288_21885 SM00245 tail specific protease N288_21905 SM00382 ATPases associated with a variety of cellular activities N288_21925 SM00937 N288_21925 N288_21930 SM00957 SecA DEAD-like domain N288_21930 SM00958 SecA preprotein cross-linking domain N288_21965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_21965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_22075 SM00487 DEAD-like helicases superfamily N288_22075 SM00490 helicase superfamily c-terminal domain N288_22095 SM01131 N288_22095 N288_22115 SM00421 helix_turn_helix, Lux Regulon N288_22115 SM00448 cheY-homologous receiver domain N288_22120 SM00387 Histidine kinase-like ATPases N288_22135 SM00028 Tetratricopeptide repeats N288_22135 SM00530 Helix-turn-helix XRE-family like proteins N288_22155 SM00957 SecA DEAD-like domain N288_22155 SM00958 SecA preprotein cross-linking domain N288_22295 SM00060 Fibronectin type 3 domain N288_22320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_22325 SM00028 Tetratricopeptide repeats N288_22325 SM00530 Helix-turn-helix XRE-family like proteins N288_22345 SM00257 Lysin motif N288_22365 SM00642 Alpha-amylase domain N288_22375 SM00642 Alpha-amylase domain N288_22395 SM00354 helix_turn _helix lactose operon repressor N288_22430 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family N288_22450 SM00829 Enoylreductase N288_22485 SM00354 helix_turn _helix lactose operon repressor N288_22515 SM00642 Alpha-amylase domain N288_22525 SM00530 Helix-turn-helix XRE-family like proteins N288_22530 SM00631 N288_22530 N288_22535 SM00257 Lysin motif N288_22570 SM01130 N288_22570 N288_22610 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_22670 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_22670 SM00866 N288_22670 N288_22770 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_22770 SM00866 N288_22770 N288_22800 SM00341 Helicase and RNase D C-terminal N288_22805 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. N288_22840 SM00342 helix_turn_helix, arabinose operon control protein N288_22840 SM00448 cheY-homologous receiver domain N288_22845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_22845 SM00387 Histidine kinase-like ATPases N288_22955 SM00354 helix_turn _helix lactose operon repressor N288_23010 SM00872 Alpha mannosidase, middle domain N288_23075 SM00342 helix_turn_helix, arabinose operon control protein N288_23075 SM00448 cheY-homologous receiver domain N288_23080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_23080 SM00387 Histidine kinase-like ATPases N288_23090 SM00327 von Willebrand factor (vWF) type A domain N288_23230 SM00382 ATPases associated with a variety of cellular activities N288_23255 SM00861 Transketolase, pyrimidine binding domain N288_23285 SM00984 UDP binding domain N288_23350 SM00736 Dystroglycan-type cadherin-like domains. N288_23380 SM00984 UDP binding domain N288_23415 SM00635 Bacterial Ig-like domain 2 N288_23415 SM00736 Dystroglycan-type cadherin-like domains. N288_23420 SM00635 Bacterial Ig-like domain 2 N288_23420 SM00736 Dystroglycan-type cadherin-like domains. N288_23425 SM00047 Lysozyme subfamily 2 N288_23440 SM00287 Bacterial SH3 domain homologues N288_23440 SM00646 N288_23440 N288_23455 SM00530 Helix-turn-helix XRE-family like proteins N288_23465 SM01321 N288_23465 N288_23485 SM00487 DEAD-like helicases superfamily N288_23485 SM00490 helicase superfamily c-terminal domain N288_23495 SM00530 Helix-turn-helix XRE-family like proteins N288_23570 SM00257 Lysin motif N288_23695 SM00382 ATPases associated with a variety of cellular activities N288_23795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_23795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_23800 SM00226 Low molecular weight phosphatase family N288_23840 SM00937 N288_23840 N288_23865 SM00357 Cold shock protein domain N288_23865 SM00382 ATPases associated with a variety of cellular activities N288_23865 SM00959 Rho termination factor, N-terminal domain N288_23895 SM00448 cheY-homologous receiver domain N288_23960 SM00155 Phospholipase D. Active site motifs. N288_23980 SM00836 DALR anticodon binding domain N288_23980 SM01016 Arginyl tRNA synthetase N terminal dom N288_24025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. N288_24085 SM00986 Uracil DNA glycosylase superfamily N288_24085 SM00987 UreE urease accessory protein, C-terminal domain N288_24130 SM00382 ATPases associated with a variety of cellular activities N288_24135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_24135 SM00387 Histidine kinase-like ATPases N288_24135 SM00388 His Kinase A (phosphoacceptor) domain N288_24140 SM00448 cheY-homologous receiver domain N288_24140 SM00862 Transcriptional regulatory protein, C terminal N288_24165 SM00382 ATPases associated with a variety of cellular activities N288_24225 SM00422 helix_turn_helix, mercury resistance N288_24230 SM00382 ATPases associated with a variety of cellular activities N288_24265 SM00984 UDP binding domain N288_24275 SM00642 Alpha-amylase domain N288_24355 SM00450 Rhodanese Homology Domain N288_24370 SM00382 ATPases associated with a variety of cellular activities N288_24385 SM00342 helix_turn_helix, arabinose operon control protein N288_24385 SM00448 cheY-homologous receiver domain N288_24390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_24400 SM00342 helix_turn_helix, arabinose operon control protein N288_24460 SM01092 CO dehydrogenase flavoprotein C-terminal domain N288_24465 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain N288_24480 SM00448 cheY-homologous receiver domain N288_24480 SM00862 Transcriptional regulatory protein, C terminal N288_24485 SM00387 Histidine kinase-like ATPases N288_24490 SM00382 ATPases associated with a variety of cellular activities N288_24545 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor N288_24545 SM00419 helix_turn_helix, cAMP Regulatory protein N288_24570 SM00530 Helix-turn-helix XRE-family like proteins N288_24630 SM01060 N288_24630 N288_24740 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_24740 SM00866 N288_24740 N288_24755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_24755 SM00387 Histidine kinase-like ATPases N288_24755 SM00388 His Kinase A (phosphoacceptor) domain N288_24760 SM00448 cheY-homologous receiver domain N288_24760 SM00862 Transcriptional regulatory protein, C terminal N288_24775 SM00387 Histidine kinase-like ATPases N288_24775 SM00388 His Kinase A (phosphoacceptor) domain N288_24780 SM00448 cheY-homologous receiver domain N288_24780 SM00862 Transcriptional regulatory protein, C terminal N288_24815 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_24840 SM00382 ATPases associated with a variety of cellular activities N288_24860 SM00422 helix_turn_helix, mercury resistance N288_24890 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain N288_24895 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_24895 SM00866 N288_24895 N288_24950 SM00382 ATPases associated with a variety of cellular activities N288_24955 SM00345 helix_turn_helix gluconate operon transcriptional repressor N288_25020 SM00342 helix_turn_helix, arabinose operon control protein N288_25020 SM00871 Bacterial transcription activator, effector binding domain N288_25055 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_25145 SM00382 ATPases associated with a variety of cellular activities N288_25205 SM01058 CarD-like/TRCF domain N288_25280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). N288_25280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_25295 SM00903 Flavin reductase like domain N288_25310 SM00347 helix_turn_helix multiple antibiotic resistance protein N288_25315 SM00867 YceI-like domain N288_25350 SM00382 ATPases associated with a variety of cellular activities N288_25380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_25380 SM00387 Histidine kinase-like ATPases N288_25380 SM00388 His Kinase A (phosphoacceptor) domain N288_25385 SM00448 cheY-homologous receiver domain N288_25385 SM00862 Transcriptional regulatory protein, C terminal N288_25450 SM01230 N288_25450 N288_25475 SM00327 von Willebrand factor (vWF) type A domain N288_25515 SM00100 Cyclic nucleotide-monophosphate binding domain N288_25555 SM00530 Helix-turn-helix XRE-family like proteins N288_25570 SM00849 Metallo-beta-lactamase superfamily N288_25580 SM00098 Alkaline phosphatase homologues N288_25605 SM00382 ATPases associated with a variety of cellular activities N288_25640 SM00382 ATPases associated with a variety of cellular activities N288_25650 SM00062 Bacterial periplasmic substrate-binding proteins N288_25650 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. N288_25660 SM00710 Parallel beta-helix repeats N288_25675 SM00116 Domain in cystathionine beta-synthase and other proteins. N288_25675 SM00382 ATPases associated with a variety of cellular activities N288_25690 SM00710 Parallel beta-helix repeats N288_25715 SM00382 ATPases associated with a variety of cellular activities N288_25760 SM00926 Molybdopterin oxidoreductase Fe4S4 domain N288_25760 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N288_25770 SM00487 DEAD-like helicases superfamily N288_25770 SM00490 helicase superfamily c-terminal domain N288_25795 SM00448 cheY-homologous receiver domain N288_25795 SM00850 LytTr DNA-binding domain N288_25800 SM00387 Histidine kinase-like ATPases N288_25815 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. N288_25825 SM00849 Metallo-beta-lactamase superfamily N288_25840 SM00091 PAS domain N288_25840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain N288_25840 SM00387 Histidine kinase-like ATPases N288_25840 SM00388 His Kinase A (phosphoacceptor) domain N288_25845 SM00448 cheY-homologous receiver domain N288_25845 SM00862 Transcriptional regulatory protein, C terminal N288_25850 SM00257 Lysin motif N288_25850 SM01208 N288_25850 N288_25880 SM00382 ATPases associated with a variety of cellular activities N288_25885 SM00387 Histidine kinase-like ATPases N288_25885 SM00388 His Kinase A (phosphoacceptor) domain N288_25890 SM00448 cheY-homologous receiver domain N288_25890 SM00862 Transcriptional regulatory protein, C terminal N288_25900 SM00788 Adenylosuccinate synthetase N288_25915 SM00267 diguanylate cyclase N288_25945 SM00014 Acid phosphatase homologues N288_25980 SM00470 ParB-like nuclease domain N288_25995 SM00470 ParB-like nuclease domain N288_26005 SM01228 N288_26005 N288_26015 SM00393 Putative single-stranded nucleic acids-binding domain N288_26015 SM01245 N288_26015