CKF48_00065 SM00448 cheY-homologous receiver domain CKF48_00090 SM00861 Transketolase, pyrimidine binding domain CKF48_00100 SM00857 Resolvase, N terminal domain CKF48_00140 SM01230 CKF48_00140 CKF48_00145 SM00422 helix_turn_helix, mercury resistance CKF48_00165 SM00382 ATPases associated with a variety of cellular activities CKF48_00185 SM00853 MutL C terminal dimerisation domain CKF48_00185 SM01340 CKF48_00185 CKF48_00190 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CKF48_00190 SM00534 ATPase domain of DNA mismatch repair MUTS family CKF48_00205 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_00235 SM00322 K homology RNA-binding domain CKF48_00235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CKF48_00240 SM00382 ATPases associated with a variety of cellular activities CKF48_00245 SM00852 Probable molybdopterin binding domain CKF48_00295 SM00382 ATPases associated with a variety of cellular activities CKF48_00305 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_00305 SM00866 CKF48_00305 CKF48_00310 SM00382 ATPases associated with a variety of cellular activities CKF48_00310 SM00843 CKF48_00310 CKF48_00325 SM00849 Metallo-beta-lactamase superfamily CKF48_00330 SM01130 CKF48_00330 CKF48_00340 SM00859 Semialdehyde dehydrogenase, NAD binding domain CKF48_00370 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_00370 SM00322 K homology RNA-binding domain CKF48_00375 SM01387 CKF48_00375 CKF48_00380 SM00904 Riboflavin kinase CKF48_00425 SM00479 CKF48_00425 CKF48_00425 SM00481 DNA polymerase alpha chain like domain CKF48_00500 SM00260 Two component signalling adaptor domain CKF48_00505 SM00073 Histidine Phosphotransfer domain CKF48_00505 SM00260 Two component signalling adaptor domain CKF48_00505 SM00387 Histidine kinase-like ATPases CKF48_00505 SM01231 CKF48_00505 CKF48_00510 SM00448 cheY-homologous receiver domain CKF48_00520 SM00382 ATPases associated with a variety of cellular activities CKF48_00520 SM00962 SRP54-type protein, GTPase domain CKF48_00555 SM00448 cheY-homologous receiver domain CKF48_00605 SM00382 ATPases associated with a variety of cellular activities CKF48_00645 SM00382 ATPases associated with a variety of cellular activities CKF48_00645 SM01086 C-terminal, D2-small domain, of ClpB protein CKF48_00675 SM00881 CoA binding domain CKF48_00740 SM00382 ATPases associated with a variety of cellular activities CKF48_00740 SM00962 SRP54-type protein, GTPase domain CKF48_00740 SM00963 SRP54-type protein, helical bundle domain CKF48_00750 SM00382 ATPases associated with a variety of cellular activities CKF48_00750 SM00962 SRP54-type protein, GTPase domain CKF48_00750 SM00963 SRP54-type protein, helical bundle domain CKF48_00755 SM00968 SMC proteins Flexible Hinge Domain CKF48_00760 SM00358 Double-stranded RNA binding motif CKF48_00760 SM00535 Ribonuclease III family CKF48_00770 SM00822 CKF48_00770 CKF48_00775 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CKF48_00790 SM00487 DEAD-like helicases superfamily CKF48_00790 SM00490 helicase superfamily c-terminal domain CKF48_00795 SM01120 CKF48_00795 CKF48_00795 SM01121 CKF48_00795 CKF48_00815 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CKF48_00830 SM00220 Serine/Threonine protein kinases, catalytic domain CKF48_00830 SM00740 CKF48_00830 CKF48_00835 SM00331 Sigma factor PP2C-like phosphatases CKF48_00835 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CKF48_00860 SM00487 DEAD-like helicases superfamily CKF48_00860 SM00490 helicase superfamily c-terminal domain CKF48_00870 SM01409 CKF48_00870 CKF48_00875 SM00072 Guanylate kinase homologues. CKF48_00910 SM00421 helix_turn_helix, Lux Regulon CKF48_00920 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CKF48_00935 SM00851 MGS-like domain CKF48_00935 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CKF48_00940 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CKF48_00965 SM00363 S4 RNA-binding domain CKF48_00990 SM00363 S4 RNA-binding domain CKF48_01035 SM00864 Tubulin/FtsZ family, GTPase domain CKF48_01035 SM00865 Tubulin/FtsZ family, C-terminal domain CKF48_01040 SM00842 Cell division protein FtsA CKF48_01095 SM00740 CKF48_01095 CKF48_01100 SM00740 CKF48_01100 CKF48_01150 SM00878 Biotin carboxylase C-terminal domain CKF48_01190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CKF48_01305 SM00878 Biotin carboxylase C-terminal domain CKF48_01330 SM00670 Large family of predicted nucleotide-binding domains CKF48_01360 SM00838 Elongation factor G C-terminus CKF48_01435 SM00861 Transketolase, pyrimidine binding domain CKF48_01470 SM00849 Metallo-beta-lactamase superfamily CKF48_01530 SM00052 Putative diguanylate phosphodiesterase CKF48_01550 SM00260 Two component signalling adaptor domain CKF48_01550 SM00448 cheY-homologous receiver domain CKF48_01620 SM00382 ATPases associated with a variety of cellular activities CKF48_01620 SM01086 C-terminal, D2-small domain, of ClpB protein CKF48_01630 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_01635 SM00387 Histidine kinase-like ATPases CKF48_01635 SM00388 His Kinase A (phosphoacceptor) domain CKF48_01660 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_01665 SM00091 PAS domain CKF48_01665 SM00387 Histidine kinase-like ATPases CKF48_01665 SM00388 His Kinase A (phosphoacceptor) domain CKF48_01670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CKF48_01670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_01705 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_01750 SM00257 Lysin motif CKF48_01785 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_01785 SM00382 ATPases associated with a variety of cellular activities CKF48_01800 SM00244 prohibitin homologues CKF48_01845 SM00421 helix_turn_helix, Lux Regulon CKF48_01845 SM00448 cheY-homologous receiver domain CKF48_01860 SM00382 ATPases associated with a variety of cellular activities CKF48_01865 SM00479 CKF48_01865 CKF48_02020 SM00954 Region found in RelA / SpoT proteins CKF48_02030 SM01118 CKF48_02030 CKF48_02085 SM00382 ATPases associated with a variety of cellular activities CKF48_02090 SM00382 ATPases associated with a variety of cellular activities CKF48_02135 SM00382 ATPases associated with a variety of cellular activities CKF48_02140 SM00382 ATPases associated with a variety of cellular activities CKF48_02150 SM00825 Beta-ketoacyl synthase CKF48_02190 SM00382 ATPases associated with a variety of cellular activities CKF48_02190 SM01086 C-terminal, D2-small domain, of ClpB protein CKF48_02205 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CKF48_02210 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CKF48_02230 SM00859 Semialdehyde dehydrogenase, NAD binding domain CKF48_02240 SM00852 Probable molybdopterin binding domain CKF48_02245 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_02285 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_02300 SM00642 Alpha-amylase domain CKF48_02315 SM00052 Putative diguanylate phosphodiesterase CKF48_02315 SM00091 PAS domain CKF48_02315 SM00267 diguanylate cyclase CKF48_02405 SM00914 CKF48_02405 CKF48_02425 SM00530 Helix-turn-helix XRE-family like proteins CKF48_02430 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_02435 SM00363 S4 RNA-binding domain CKF48_02455 SM00382 ATPases associated with a variety of cellular activities CKF48_02470 SM01059 Chloramphenicol acetyltransferase CKF48_02485 SM00382 ATPases associated with a variety of cellular activities CKF48_02505 SM00382 ATPases associated with a variety of cellular activities CKF48_02520 SM00725 NEAr Transporter domain CKF48_02525 SM00725 NEAr Transporter domain CKF48_02630 SM00382 ATPases associated with a variety of cellular activities CKF48_02655 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_02690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CKF48_02705 SM00421 helix_turn_helix, Lux Regulon CKF48_02705 SM00448 cheY-homologous receiver domain CKF48_02725 SM00382 ATPases associated with a variety of cellular activities CKF48_02755 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_02855 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_02855 SM01091 Transporter associated domain CKF48_02860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_02860 SM00387 Histidine kinase-like ATPases CKF48_02860 SM00388 His Kinase A (phosphoacceptor) domain CKF48_02865 SM00448 cheY-homologous receiver domain CKF48_02865 SM00862 Transcriptional regulatory protein, C terminal CKF48_02870 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_02900 SM00421 helix_turn_helix, Lux Regulon CKF48_02900 SM00448 cheY-homologous receiver domain CKF48_03005 SM00382 ATPases associated with a variety of cellular activities CKF48_03015 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_03020 SM00881 CoA binding domain CKF48_03030 SM00849 Metallo-beta-lactamase superfamily CKF48_03040 SM00763 PrkA AAA domain CKF48_03060 SM00567 E-Z type HEAT repeats CKF48_03065 SM00873 B3/4 domain CKF48_03085 SM00382 ATPases associated with a variety of cellular activities CKF48_03245 SM00382 ATPases associated with a variety of cellular activities CKF48_03250 SM00382 ATPases associated with a variety of cellular activities CKF48_03255 SM00382 ATPases associated with a variety of cellular activities CKF48_03330 SM00382 ATPases associated with a variety of cellular activities CKF48_03335 SM00382 ATPases associated with a variety of cellular activities CKF48_03360 SM00382 ATPases associated with a variety of cellular activities CKF48_03365 SM00382 ATPases associated with a variety of cellular activities CKF48_03460 SM00342 helix_turn_helix, arabinose operon control protein CKF48_03460 SM00871 Bacterial transcription activator, effector binding domain CKF48_03475 SM00382 ATPases associated with a variety of cellular activities CKF48_03540 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_03540 SM00895 CKF48_03540 CKF48_03585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CKF48_03590 SM00382 ATPases associated with a variety of cellular activities CKF48_03595 SM00382 ATPases associated with a variety of cellular activities CKF48_03635 SM00984 UDP binding domain CKF48_03660 SM00478 endonuclease III CKF48_03730 SM00530 Helix-turn-helix XRE-family like proteins CKF48_03770 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CKF48_03770 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CKF48_03770 SM00493 CKF48_03770 CKF48_03825 SM00155 Phospholipase D. Active site motifs. CKF48_03865 SM00382 ATPases associated with a variety of cellular activities CKF48_03870 SM00421 helix_turn_helix, Lux Regulon CKF48_03870 SM00448 cheY-homologous receiver domain CKF48_03875 SM00387 Histidine kinase-like ATPases CKF48_03915 SM00487 DEAD-like helicases superfamily CKF48_03915 SM00490 helicase superfamily c-terminal domain CKF48_03930 SM00829 Enoylreductase CKF48_03940 SM00357 Cold shock protein domain CKF48_03945 SM00387 Histidine kinase-like ATPases CKF48_03950 SM00448 cheY-homologous receiver domain CKF48_03950 SM00850 LytTr DNA-binding domain CKF48_03960 SM00479 CKF48_03960 CKF48_03995 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_03995 SM00895 CKF48_03995 CKF48_04030 SM00448 cheY-homologous receiver domain CKF48_04035 SM00091 PAS domain CKF48_04035 SM00387 Histidine kinase-like ATPases CKF48_04055 SM00850 LytTr DNA-binding domain CKF48_04075 SM00382 ATPases associated with a variety of cellular activities CKF48_04075 SM00930 CKF48_04075 CKF48_04100 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CKF48_04125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_04125 SM00387 Histidine kinase-like ATPases CKF48_04125 SM00388 His Kinase A (phosphoacceptor) domain CKF48_04130 SM00448 cheY-homologous receiver domain CKF48_04130 SM00862 Transcriptional regulatory protein, C terminal CKF48_04160 SM00966 SpoVT / AbrB like domain CKF48_04220 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_04250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CKF48_04265 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CKF48_04290 SM00382 ATPases associated with a variety of cellular activities CKF48_04295 SM00382 ATPases associated with a variety of cellular activities CKF48_04300 SM00382 ATPases associated with a variety of cellular activities CKF48_04320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_04320 SM00387 Histidine kinase-like ATPases CKF48_04320 SM00388 His Kinase A (phosphoacceptor) domain CKF48_04325 SM00448 cheY-homologous receiver domain CKF48_04325 SM00862 Transcriptional regulatory protein, C terminal CKF48_04380 SM00382 ATPases associated with a variety of cellular activities CKF48_04410 SM01007 Class II Aldolase and Adducin N-terminal domain CKF48_04425 SM00829 Enoylreductase CKF48_04450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_04605 SM00829 Enoylreductase CKF48_04690 SM00382 ATPases associated with a variety of cellular activities CKF48_04695 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_04735 SM00857 Resolvase, N terminal domain CKF48_04755 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_04760 SM00046 Diacylglycerol kinase catalytic domain (presumed) CKF48_04780 SM00100 Cyclic nucleotide-monophosphate binding domain CKF48_04795 SM00091 PAS domain CKF48_04795 SM00387 Histidine kinase-like ATPases CKF48_04795 SM00388 His Kinase A (phosphoacceptor) domain CKF48_04860 SM00829 Enoylreductase CKF48_04870 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_04895 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_04960 SM00422 helix_turn_helix, mercury resistance CKF48_04965 SM01091 Transporter associated domain CKF48_04980 SM00882 Coenzyme A transferase CKF48_04985 SM00882 Coenzyme A transferase CKF48_05075 SM00422 helix_turn_helix, mercury resistance CKF48_05095 SM00849 Metallo-beta-lactamase superfamily CKF48_05130 SM00091 PAS domain CKF48_05130 SM00387 Histidine kinase-like ATPases CKF48_05130 SM00388 His Kinase A (phosphoacceptor) domain CKF48_05145 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CKF48_05145 SM00091 PAS domain CKF48_05145 SM00387 Histidine kinase-like ATPases CKF48_05145 SM00388 His Kinase A (phosphoacceptor) domain CKF48_05200 SM00382 ATPases associated with a variety of cellular activities CKF48_05220 SM00354 helix_turn _helix lactose operon repressor CKF48_05235 SM00342 helix_turn_helix, arabinose operon control protein CKF48_05250 SM00382 ATPases associated with a variety of cellular activities CKF48_05260 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_05280 SM00450 Rhodanese Homology Domain CKF48_05280 SM00849 Metallo-beta-lactamase superfamily CKF48_05285 SM00450 Rhodanese Homology Domain CKF48_05290 SM00450 Rhodanese Homology Domain CKF48_05295 SM00450 Rhodanese Homology Domain CKF48_05325 SM00342 helix_turn_helix, arabinose operon control protein CKF48_05325 SM00871 Bacterial transcription activator, effector binding domain CKF48_05380 SM00248 ankyrin repeats CKF48_05385 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_05395 SM00382 ATPases associated with a variety of cellular activities CKF48_05400 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_05405 SM00342 helix_turn_helix, arabinose operon control protein CKF48_05450 SM00098 Alkaline phosphatase homologues CKF48_05470 SM00530 Helix-turn-helix XRE-family like proteins CKF48_05505 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_05525 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CKF48_05555 SM00382 ATPases associated with a variety of cellular activities CKF48_05560 SM00382 ATPases associated with a variety of cellular activities CKF48_05595 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CKF48_05610 SM01130 CKF48_05610 CKF48_05615 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_05615 SM00895 CKF48_05615 CKF48_05620 SM00858 CKF48_05620 CKF48_05625 SM00829 Enoylreductase CKF48_05685 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_05720 SM00448 cheY-homologous receiver domain CKF48_05725 SM00387 Histidine kinase-like ATPases CKF48_05730 SM00829 Enoylreductase CKF48_05865 SM00382 ATPases associated with a variety of cellular activities CKF48_05875 SM00448 cheY-homologous receiver domain CKF48_05875 SM00862 Transcriptional regulatory protein, C terminal CKF48_05880 SM00387 Histidine kinase-like ATPases CKF48_05880 SM00388 His Kinase A (phosphoacceptor) domain CKF48_05910 SM00382 ATPases associated with a variety of cellular activities CKF48_05980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CKF48_05985 SM00047 Lysozyme subfamily 2 CKF48_06035 SM00382 ATPases associated with a variety of cellular activities CKF48_06050 SM00382 ATPases associated with a variety of cellular activities CKF48_06055 SM00382 ATPases associated with a variety of cellular activities CKF48_06120 SM00530 Helix-turn-helix XRE-family like proteins CKF48_06125 SM00530 Helix-turn-helix XRE-family like proteins CKF48_06150 SM00382 ATPases associated with a variety of cellular activities CKF48_06155 SM00382 ATPases associated with a variety of cellular activities CKF48_06180 SM00829 Enoylreductase CKF48_06210 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CKF48_06215 SM01092 CO dehydrogenase flavoprotein C-terminal domain CKF48_06310 SM00382 ATPases associated with a variety of cellular activities CKF48_06330 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_06330 SM00895 CKF48_06330 CKF48_06340 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CKF48_06340 SM00534 ATPase domain of DNA mismatch repair MUTS family CKF48_06430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_06495 SM00487 DEAD-like helicases superfamily CKF48_06525 SM00046 Diacylglycerol kinase catalytic domain (presumed) CKF48_06530 SM00849 Metallo-beta-lactamase superfamily CKF48_06545 SM01022 CKF48_06545 CKF48_06575 SM00342 helix_turn_helix, arabinose operon control protein CKF48_06575 SM00448 cheY-homologous receiver domain CKF48_06585 SM00382 ATPases associated with a variety of cellular activities CKF48_06590 SM00382 ATPases associated with a variety of cellular activities CKF48_06685 SM00344 helix_turn_helix ASNC type CKF48_06740 SM00382 ATPases associated with a variety of cellular activities CKF48_06775 SM00422 helix_turn_helix, mercury resistance CKF48_06785 SM00028 Tetratricopeptide repeats CKF48_06785 SM00530 Helix-turn-helix XRE-family like proteins CKF48_06855 SM00855 Phosphoglycerate mutase family CKF48_06905 SM01207 CKF48_06905 CKF48_06930 SM01131 CKF48_06930 CKF48_06990 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_06990 SM00895 CKF48_06990 CKF48_07040 SM00530 Helix-turn-helix XRE-family like proteins CKF48_07055 SM00845 GatB domain CKF48_07105 SM00530 Helix-turn-helix XRE-family like proteins CKF48_07160 SM01059 Chloramphenicol acetyltransferase CKF48_07175 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CKF48_07175 SM00292 breast cancer carboxy-terminal domain CKF48_07175 SM00532 Ligase N family CKF48_07220 SM01209 CKF48_07220 CKF48_07220 SM01210 CKF48_07220 CKF48_07225 SM00798 AICARFT/IMPCHase bienzyme CKF48_07225 SM00851 MGS-like domain CKF48_07265 SM00998 Adenylosuccinate lyase C-terminus CKF48_07275 SM01001 AIR carboxylase CKF48_07325 SM00460 Transglutaminase/protease-like homologues CKF48_07335 SM00382 ATPases associated with a variety of cellular activities CKF48_07345 SM00460 Transglutaminase/protease-like homologues CKF48_07350 SM00327 von Willebrand factor (vWF) type A domain CKF48_07370 SM00327 von Willebrand factor (vWF) type A domain CKF48_07510 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_07515 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_07515 SM01091 Transporter associated domain CKF48_07520 SM00422 helix_turn_helix, mercury resistance CKF48_07525 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_07525 SM00924 MgtE intracellular N domain CKF48_07715 SM00530 Helix-turn-helix XRE-family like proteins CKF48_07720 SM00530 Helix-turn-helix XRE-family like proteins CKF48_07735 SM00883 Chaperonin 10 Kd subunit CKF48_07750 SM00881 CoA binding domain CKF48_07760 SM00382 ATPases associated with a variety of cellular activities CKF48_07865 SM00731 SprT homologues. CKF48_07875 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_07875 SM00732 Likely ribonuclease with RNase H fold. CKF48_07880 SM00331 Sigma factor PP2C-like phosphatases CKF48_07900 SM00331 Sigma factor PP2C-like phosphatases CKF48_07930 SM01005 Alanine racemase, C-terminal domain CKF48_07965 SM00487 DEAD-like helicases superfamily CKF48_07965 SM00490 helicase superfamily c-terminal domain CKF48_07985 SM00855 Phosphoglycerate mutase family CKF48_08010 SM00855 Phosphoglycerate mutase family CKF48_08040 SM00382 ATPases associated with a variety of cellular activities CKF48_08060 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_08060 SM00924 MgtE intracellular N domain CKF48_08070 SM00836 DALR anticodon binding domain CKF48_08070 SM01016 Arginyl tRNA synthetase N terminal dom CKF48_08105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_08130 SM00382 ATPases associated with a variety of cellular activities CKF48_08150 SM00382 ATPases associated with a variety of cellular activities CKF48_08160 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CKF48_08175 SM00382 ATPases associated with a variety of cellular activities CKF48_08200 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CKF48_08250 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CKF48_08250 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CKF48_08285 SM00387 Histidine kinase-like ATPases CKF48_08285 SM00388 His Kinase A (phosphoacceptor) domain CKF48_08290 SM00825 Beta-ketoacyl synthase CKF48_08315 SM00382 ATPases associated with a variety of cellular activities CKF48_08320 SM00850 LytTr DNA-binding domain CKF48_08325 SM00382 ATPases associated with a variety of cellular activities CKF48_08355 SM00047 Lysozyme subfamily 2 CKF48_08355 SM00257 Lysin motif CKF48_08395 SM00346 helix_turn_helix isocitrate lyase regulation CKF48_08455 SM00346 helix_turn_helix isocitrate lyase regulation CKF48_08510 SM00422 helix_turn_helix, mercury resistance CKF48_08540 SM01060 CKF48_08540 CKF48_08545 SM00989 CKF48_08545 CKF48_08555 SM00859 Semialdehyde dehydrogenase, NAD binding domain CKF48_08560 SM00346 helix_turn_helix isocitrate lyase regulation CKF48_08590 SM00903 Flavin reductase like domain CKF48_08640 SM01207 CKF48_08640 CKF48_08665 SM00387 Histidine kinase-like ATPases CKF48_08665 SM00388 His Kinase A (phosphoacceptor) domain CKF48_08670 SM00448 cheY-homologous receiver domain CKF48_08670 SM00862 Transcriptional regulatory protein, C terminal CKF48_08805 SM00342 helix_turn_helix, arabinose operon control protein CKF48_08875 SM00530 Helix-turn-helix XRE-family like proteins CKF48_08915 SM00422 helix_turn_helix, mercury resistance CKF48_09015 SM00984 UDP binding domain CKF48_09085 SM00752 Horizontally Transferred TransMembrane Domain CKF48_09115 SM00382 ATPases associated with a variety of cellular activities CKF48_09120 SM00387 Histidine kinase-like ATPases CKF48_09120 SM00388 His Kinase A (phosphoacceptor) domain CKF48_09125 SM00448 cheY-homologous receiver domain CKF48_09125 SM00862 Transcriptional regulatory protein, C terminal CKF48_09145 SM00530 Helix-turn-helix XRE-family like proteins CKF48_09155 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_09185 SM00530 Helix-turn-helix XRE-family like proteins CKF48_09310 SM01251 CKF48_09310 CKF48_09325 SM00646 CKF48_09325 CKF48_09360 SM00822 CKF48_09360 CKF48_09410 SM00382 ATPases associated with a variety of cellular activities CKF48_09435 SM00448 cheY-homologous receiver domain CKF48_09435 SM00862 Transcriptional regulatory protein, C terminal CKF48_09440 SM00387 Histidine kinase-like ATPases CKF48_09440 SM00388 His Kinase A (phosphoacceptor) domain CKF48_09450 SM00382 ATPases associated with a variety of cellular activities CKF48_09590 SM00382 ATPases associated with a variety of cellular activities CKF48_09660 SM00954 Region found in RelA / SpoT proteins CKF48_09675 SM00257 Lysin motif CKF48_09675 SM00646 CKF48_09675 CKF48_09830 SM00497 Intron encoded nuclease repeat motif CKF48_09880 SM00382 ATPases associated with a variety of cellular activities CKF48_09905 SM00530 Helix-turn-helix XRE-family like proteins CKF48_09920 SM00530 Helix-turn-helix XRE-family like proteins CKF48_09930 SM00530 Helix-turn-helix XRE-family like proteins CKF48_09970 SM00382 ATPases associated with a variety of cellular activities CKF48_09975 SM00382 ATPases associated with a variety of cellular activities CKF48_09990 SM00662 RNA polymerases D CKF48_10010 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_10070 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CKF48_10075 SM01374 CKF48_10075 CKF48_10095 SM00322 K homology RNA-binding domain CKF48_10110 SM01382 CKF48_10110 CKF48_10110 SM01383 CKF48_10110 CKF48_10130 SM01403 CKF48_10130 CKF48_10140 SM01018 B12 binding domain CKF48_10150 SM00838 Elongation factor G C-terminus CKF48_10150 SM00889 Elongation factor G, domain IV CKF48_10170 SM00663 RNA polymerase I subunit A N-terminus CKF48_10200 SM00649 Ribosomal protein L11/L12 CKF48_10205 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CKF48_10205 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CKF48_10220 SM00421 helix_turn_helix, Lux Regulon CKF48_10230 SM00967 RNA 2'-O ribose methyltransferase substrate binding CKF48_10235 SM00535 Ribonuclease III family CKF48_10240 SM00840 CKF48_10240 CKF48_10265 SM00670 Large family of predicted nucleotide-binding domains CKF48_10275 SM00382 ATPases associated with a variety of cellular activities CKF48_10280 SM00382 ATPases associated with a variety of cellular activities CKF48_10280 SM01086 C-terminal, D2-small domain, of ClpB protein CKF48_10395 SM00530 Helix-turn-helix XRE-family like proteins CKF48_10405 SM00905 Dihydroneopterin aldolase CKF48_10450 SM00382 ATPases associated with a variety of cellular activities CKF48_10460 SM00977 TilS substrate C-terminal domain CKF48_10465 SM00220 Serine/Threonine protein kinases, catalytic domain CKF48_10475 SM00331 Sigma factor PP2C-like phosphatases CKF48_10475 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CKF48_10490 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_10510 SM00363 S4 RNA-binding domain CKF48_10525 SM00966 SpoVT / AbrB like domain CKF48_10550 SM01400 CKF48_10550 CKF48_10595 SM00650 Ribosomal RNA adenine dimethylases CKF48_10600 SM00493 CKF48_10600 CKF48_10605 SM01208 CKF48_10605 CKF48_10625 SM00966 SpoVT / AbrB like domain CKF48_10710 SM00493 CKF48_10710 CKF48_10720 SM00382 ATPases associated with a variety of cellular activities CKF48_10740 SM00257 Lysin motif CKF48_10740 SM00636 CKF48_10740 CKF48_10765 SM00936 Penicillin-binding protein 5, C-terminal domain CKF48_10770 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_10770 SM01240 CKF48_10770 CKF48_10805 SM00434 DNA Topoisomerase IV CKF48_10810 SM00387 Histidine kinase-like ATPases CKF48_10810 SM00433 TopoisomeraseII CKF48_10830 SM00480 DNA polymerase III beta subunit CKF48_10835 SM00382 ATPases associated with a variety of cellular activities CKF48_10835 SM00760 Bacterial dnaA protein helix-turn-helix domain CKF48_10855 SM00393 Putative single-stranded nucleic acids-binding domain CKF48_10855 SM01245 CKF48_10855 CKF48_10865 SM01228 CKF48_10865 CKF48_10875 SM00470 ParB-like nuclease domain CKF48_10885 SM00470 ParB-like nuclease domain CKF48_10930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_10945 SM00267 diguanylate cyclase CKF48_10955 SM00382 ATPases associated with a variety of cellular activities CKF48_10960 SM00788 Adenylosuccinate synthetase CKF48_10995 SM00257 Lysin motif CKF48_10995 SM01208 CKF48_10995 CKF48_11000 SM00448 cheY-homologous receiver domain CKF48_11000 SM00862 Transcriptional regulatory protein, C terminal CKF48_11005 SM00091 PAS domain CKF48_11005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_11005 SM00387 Histidine kinase-like ATPases CKF48_11005 SM00388 His Kinase A (phosphoacceptor) domain CKF48_11020 SM00849 Metallo-beta-lactamase superfamily CKF48_11025 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CKF48_11065 SM00387 Histidine kinase-like ATPases CKF48_11065 SM00388 His Kinase A (phosphoacceptor) domain CKF48_11070 SM00448 cheY-homologous receiver domain CKF48_11070 SM00862 Transcriptional regulatory protein, C terminal CKF48_11075 SM00248 ankyrin repeats CKF48_11090 SM00422 helix_turn_helix, mercury resistance CKF48_11105 SM00487 DEAD-like helicases superfamily CKF48_11105 SM00490 helicase superfamily c-terminal domain CKF48_11115 SM00860 SMI1 / KNR4 family CKF48_11155 SM00363 S4 RNA-binding domain CKF48_11165 SM00487 DEAD-like helicases superfamily CKF48_11165 SM00490 helicase superfamily c-terminal domain CKF48_11180 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_11235 SM00448 cheY-homologous receiver domain CKF48_11235 SM00862 Transcriptional regulatory protein, C terminal CKF48_11240 SM00382 ATPases associated with a variety of cellular activities CKF48_11265 SM00382 ATPases associated with a variety of cellular activities CKF48_11295 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_11295 SM00895 CKF48_11295 CKF48_11315 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CKF48_11315 SM00091 PAS domain CKF48_11320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CKF48_11350 SM00796 Allophanate hydrolase subunit 1 CKF48_11355 SM00797 Allophanate hydrolase subunit 2 CKF48_11385 SM00387 Histidine kinase-like ATPases CKF48_11385 SM00388 His Kinase A (phosphoacceptor) domain CKF48_11390 SM00448 cheY-homologous receiver domain CKF48_11390 SM00862 Transcriptional regulatory protein, C terminal CKF48_11420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CKF48_11425 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_11435 SM00382 ATPases associated with a variety of cellular activities CKF48_11455 SM01091 Transporter associated domain CKF48_11470 SM00382 ATPases associated with a variety of cellular activities CKF48_11475 SM00387 Histidine kinase-like ATPases CKF48_11480 SM00448 cheY-homologous receiver domain CKF48_11480 SM00862 Transcriptional regulatory protein, C terminal CKF48_11490 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_11490 SM00866 CKF48_11490 CKF48_11520 SM00382 ATPases associated with a variety of cellular activities CKF48_11530 SM00382 ATPases associated with a variety of cellular activities CKF48_11535 SM00481 DNA polymerase alpha chain like domain CKF48_11545 SM00382 ATPases associated with a variety of cellular activities CKF48_11600 SM00642 Alpha-amylase domain CKF48_11630 SM00382 ATPases associated with a variety of cellular activities CKF48_11635 SM00382 ATPases associated with a variety of cellular activities CKF48_11640 SM00422 helix_turn_helix, mercury resistance CKF48_11680 SM00530 Helix-turn-helix XRE-family like proteins CKF48_11725 SM00382 ATPases associated with a variety of cellular activities CKF48_11730 SM00382 ATPases associated with a variety of cellular activities CKF48_11755 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_11755 SM00091 PAS domain CKF48_11755 SM00387 Histidine kinase-like ATPases CKF48_11755 SM00388 His Kinase A (phosphoacceptor) domain CKF48_11760 SM00448 cheY-homologous receiver domain CKF48_11775 SM00382 ATPases associated with a variety of cellular activities CKF48_11800 SM00422 helix_turn_helix, mercury resistance CKF48_11820 SM00382 ATPases associated with a variety of cellular activities CKF48_11840 SM00825 Beta-ketoacyl synthase CKF48_11845 SM00823 Phosphopantetheine attachment site CKF48_11850 SM00823 Phosphopantetheine attachment site CKF48_11880 SM00028 Tetratricopeptide repeats CKF48_11880 SM00530 Helix-turn-helix XRE-family like proteins CKF48_11885 SM00421 helix_turn_helix, Lux Regulon CKF48_11955 SM00986 Uracil DNA glycosylase superfamily CKF48_11955 SM00987 UreE urease accessory protein, C-terminal domain CKF48_12010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CKF48_12065 SM00836 DALR anticodon binding domain CKF48_12065 SM01016 Arginyl tRNA synthetase N terminal dom CKF48_12085 SM00155 Phospholipase D. Active site motifs. CKF48_12140 SM00448 cheY-homologous receiver domain CKF48_12160 SM00357 Cold shock protein domain CKF48_12160 SM00382 ATPases associated with a variety of cellular activities CKF48_12160 SM00959 Rho termination factor, N-terminal domain CKF48_12185 SM00937 CKF48_12185 CKF48_12220 SM00226 Low molecular weight phosphatase family CKF48_12225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CKF48_12225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_12300 SM00382 ATPases associated with a variety of cellular activities CKF48_12390 SM00257 Lysin motif CKF48_12460 SM00487 DEAD-like helicases superfamily CKF48_12460 SM00490 helicase superfamily c-terminal domain CKF48_12540 SM00448 cheY-homologous receiver domain CKF48_12545 SM00091 PAS domain CKF48_12545 SM00387 Histidine kinase-like ATPases CKF48_12560 SM00480 DNA polymerase III beta subunit CKF48_12585 SM00257 Lysin motif CKF48_12595 SM00530 Helix-turn-helix XRE-family like proteins CKF48_12600 SM00450 Rhodanese Homology Domain CKF48_12620 SM00710 Parallel beta-helix repeats CKF48_12640 SM00060 Fibronectin type 3 domain CKF48_12640 SM00365 Leucine-rich repeat, SDS22-like subfamily CKF48_12675 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_12675 SM00866 CKF48_12675 CKF48_12690 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_12710 SM00382 ATPases associated with a variety of cellular activities CKF48_12710 SM00930 CKF48_12710 CKF48_12765 SM00382 ATPases associated with a variety of cellular activities CKF48_12770 SM00382 ATPases associated with a variety of cellular activities CKF48_12775 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CKF48_12790 SM00850 LytTr DNA-binding domain CKF48_12825 SM00091 PAS domain CKF48_12825 SM00382 ATPases associated with a variety of cellular activities CKF48_12855 SM01130 CKF48_12855 CKF48_12890 SM00382 ATPases associated with a variety of cellular activities CKF48_12955 SM01133 CKF48_12955 CKF48_12985 SM00257 Lysin motif CKF48_12985 SM00646 CKF48_12985 CKF48_12995 SM00357 Cold shock protein domain CKF48_13000 SM00382 ATPases associated with a variety of cellular activities CKF48_13040 SM00354 helix_turn _helix lactose operon repressor CKF48_13075 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_13095 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_13105 SM00849 Metallo-beta-lactamase superfamily CKF48_13110 SM00855 Phosphoglycerate mutase family CKF48_13140 SM00382 ATPases associated with a variety of cellular activities CKF48_13145 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_13270 SM00226 Low molecular weight phosphatase family CKF48_13300 SM00854 Bacterial capsule synthesis protein PGA_cap CKF48_13325 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_13370 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_13415 SM00382 ATPases associated with a variety of cellular activities CKF48_13420 SM00382 ATPases associated with a variety of cellular activities CKF48_13430 SM00287 Bacterial SH3 domain homologues CKF48_13430 SM00646 CKF48_13430 CKF48_13460 SM00047 Lysozyme subfamily 2 CKF48_13505 SM00387 Histidine kinase-like ATPases CKF48_13520 SM00487 DEAD-like helicases superfamily CKF48_13520 SM00490 helicase superfamily c-terminal domain CKF48_13605 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_13640 SM00382 ATPases associated with a variety of cellular activities CKF48_13660 SM00957 SecA DEAD-like domain CKF48_13660 SM00958 SecA preprotein cross-linking domain CKF48_13690 SM00382 ATPases associated with a variety of cellular activities CKF48_13705 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CKF48_13705 SM00245 tail specific protease CKF48_13710 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CKF48_13715 SM00382 ATPases associated with a variety of cellular activities CKF48_13720 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_13730 SM00903 Flavin reductase like domain CKF48_13760 SM00487 DEAD-like helicases superfamily CKF48_13760 SM00490 helicase superfamily c-terminal domain CKF48_13765 SM00382 ATPases associated with a variety of cellular activities CKF48_13790 SM00822 CKF48_13790 CKF48_13865 SM00028 Tetratricopeptide repeats CKF48_13950 SM00530 Helix-turn-helix XRE-family like proteins CKF48_13980 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CKF48_14000 SM01192 CKF48_14000 CKF48_14000 SM01193 CKF48_14000 CKF48_14015 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_14015 SM00357 Cold shock protein domain CKF48_14015 SM00955 CKF48_14015 CKF48_14040 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_14045 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_14055 SM00226 Low molecular weight phosphatase family CKF48_14065 SM00530 Helix-turn-helix XRE-family like proteins CKF48_14070 SM00881 CoA binding domain CKF48_14140 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_14140 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CKF48_14150 SM00382 ATPases associated with a variety of cellular activities CKF48_14160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CKF48_14170 SM00530 Helix-turn-helix XRE-family like proteins CKF48_14195 SM00382 ATPases associated with a variety of cellular activities CKF48_14230 SM00382 ATPases associated with a variety of cellular activities CKF48_14240 SM00882 Coenzyme A transferase CKF48_14245 SM00882 Coenzyme A transferase CKF48_14265 SM00382 ATPases associated with a variety of cellular activities CKF48_14265 SM00930 CKF48_14265 CKF48_14335 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_14350 SM00382 ATPases associated with a variety of cellular activities CKF48_14560 SM00493 CKF48_14560 CKF48_14580 SM00382 ATPases associated with a variety of cellular activities CKF48_14580 SM00930 CKF48_14580 CKF48_14595 SM00382 ATPases associated with a variety of cellular activities CKF48_14620 SM00644 CKF48_14620 CKF48_14680 SM00382 ATPases associated with a variety of cellular activities CKF48_14685 SM00382 ATPases associated with a variety of cellular activities CKF48_14695 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_14745 SM00420 helix_turn_helix, Deoxyribose operon repressor CKF48_14835 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_14835 SM00895 CKF48_14835 CKF48_14850 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CKF48_14860 SM00861 Transketolase, pyrimidine binding domain CKF48_14935 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CKF48_14935 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CKF48_14940 SM00946 Prolyl-tRNA synthetase, C-terminal CKF48_15010 SM00479 CKF48_15010 CKF48_15015 SM01298 CKF48_15015 CKF48_15055 SM00530 Helix-turn-helix XRE-family like proteins CKF48_15060 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_15215 SM00530 Helix-turn-helix XRE-family like proteins CKF48_15260 SM00060 Fibronectin type 3 domain CKF48_15260 SM00635 Bacterial Ig-like domain 2 CKF48_15265 SM00382 ATPases associated with a variety of cellular activities CKF48_15510 SM00642 Alpha-amylase domain CKF48_15595 SM00947 Carbonic anhydrase CKF48_15600 SM01234 CKF48_15600 CKF48_15615 SM00155 Phospholipase D. Active site motifs. CKF48_15650 SM00382 ATPases associated with a variety of cellular activities CKF48_15710 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_15740 SM00450 Rhodanese Homology Domain CKF48_15760 SM00382 ATPases associated with a variety of cellular activities CKF48_15770 SM00422 helix_turn_helix, mercury resistance CKF48_15810 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_15810 SM00895 CKF48_15810 CKF48_15825 SM00363 S4 RNA-binding domain CKF48_15830 SM00420 helix_turn_helix, Deoxyribose operon repressor CKF48_15835 SM00382 ATPases associated with a variety of cellular activities CKF48_15880 SM01060 CKF48_15880 CKF48_15920 SM00642 Alpha-amylase domain CKF48_15940 SM00849 Metallo-beta-lactamase superfamily CKF48_15980 SM00382 ATPases associated with a variety of cellular activities CKF48_15980 SM00843 CKF48_15980 CKF48_16020 SM00842 Cell division protein FtsA CKF48_16025 SM00830 Chorismate mutase type II CKF48_16030 SM00354 helix_turn _helix lactose operon repressor CKF48_16100 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_16130 SM00363 S4 RNA-binding domain CKF48_16160 SM00382 ATPases associated with a variety of cellular activities CKF48_16195 SM00829 Enoylreductase CKF48_16200 SM00422 helix_turn_helix, mercury resistance CKF48_16210 SM00363 S4 RNA-binding domain CKF48_16210 SM01390 CKF48_16210 CKF48_16215 SM00267 diguanylate cyclase CKF48_16225 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CKF48_16255 SM00981 CKF48_16255 CKF48_16340 SM00852 Probable molybdopterin binding domain CKF48_16395 SM00849 Metallo-beta-lactamase superfamily CKF48_16405 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_16430 SM00481 DNA polymerase alpha chain like domain CKF48_16435 SM00919 Malic enzyme, NAD binding domain CKF48_16435 SM01274 CKF48_16435 CKF48_16440 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_16490 SM01329 CKF48_16490 CKF48_16510 SM00091 PAS domain CKF48_16510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_16510 SM00387 Histidine kinase-like ATPases CKF48_16510 SM00388 His Kinase A (phosphoacceptor) domain CKF48_16515 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CKF48_16515 SM00474 3'-5' exonuclease CKF48_16515 SM00475 5'-3' exonuclease CKF48_16515 SM00482 DNA polymerase A domain CKF48_16520 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CKF48_16520 SM01232 CKF48_16520 CKF48_16535 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CKF48_16565 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CKF48_16615 SM00967 RNA 2'-O ribose methyltransferase substrate binding CKF48_16625 SM00873 B3/4 domain CKF48_16625 SM00874 tRNA synthetase B5 domain CKF48_16625 SM00896 Ferredoxin-fold anticodon binding domain CKF48_16645 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CKF48_16645 SM00481 DNA polymerase alpha chain like domain CKF48_16645 SM00483 DNA polymerase X family CKF48_16675 SM00893 Electron transfer flavoprotein domain CKF48_16680 SM00893 Electron transfer flavoprotein domain CKF48_16690 SM00465 GIY-YIG type nucleases (URI domain) CKF48_16730 SM00421 helix_turn_helix, Lux Regulon CKF48_16735 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_16745 SM00341 Helicase and RNase D C-terminal CKF48_16745 SM00487 DEAD-like helicases superfamily CKF48_16745 SM00490 helicase superfamily c-terminal domain CKF48_16745 SM00956 CKF48_16745 CKF48_16750 SM00909 Sporulation and spore germination CKF48_16785 SM00917 LeuA allosteric (dimerisation) domain CKF48_16790 SM01329 CKF48_16790 CKF48_16815 SM00382 ATPases associated with a variety of cellular activities CKF48_16815 SM00994 ClpX C4-type zinc finger CKF48_16815 SM01086 C-terminal, D2-small domain, of ClpB protein CKF48_16820 SM00382 ATPases associated with a variety of cellular activities CKF48_16825 SM00382 ATPases associated with a variety of cellular activities CKF48_16825 SM00464 Found in ATP-dependent protease La (LON) CKF48_16835 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_16835 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CKF48_16845 SM00382 ATPases associated with a variety of cellular activities CKF48_16875 SM01004 Delta-aminolevulinic acid dehydratase CKF48_16885 SM00257 Lysin motif CKF48_16925 SM00382 ATPases associated with a variety of cellular activities CKF48_16930 SM00382 ATPases associated with a variety of cellular activities CKF48_17015 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_17035 SM01317 CKF48_17035 CKF48_17080 SM00257 Lysin motif CKF48_17145 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CKF48_17150 SM00382 ATPases associated with a variety of cellular activities CKF48_17170 SM01323 CKF48_17170 CKF48_17220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CKF48_17220 SM00954 Region found in RelA / SpoT proteins CKF48_17230 SM00287 Bacterial SH3 domain homologues CKF48_17230 SM00646 CKF48_17230 CKF48_17265 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains CKF48_17275 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_17280 SM00382 ATPases associated with a variety of cellular activities CKF48_17285 SM00382 ATPases associated with a variety of cellular activities CKF48_17300 SM00382 ATPases associated with a variety of cellular activities CKF48_17325 SM00028 Tetratricopeptide repeats CKF48_17355 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CKF48_17365 SM00732 Likely ribonuclease with RNase H fold. CKF48_17475 SM01103 CKF48_17475 CKF48_17485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CKF48_17505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CKF48_17515 SM00849 Metallo-beta-lactamase superfamily CKF48_17545 SM00838 Elongation factor G C-terminus CKF48_17550 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_17585 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_17595 SM00530 Helix-turn-helix XRE-family like proteins CKF48_17600 SM01133 CKF48_17600 CKF48_17645 SM00322 K homology RNA-binding domain CKF48_17650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CKF48_17695 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_17710 SM00400 zinc finger CKF48_17710 SM00493 CKF48_17710 CKF48_17750 SM00487 DEAD-like helicases superfamily CKF48_17750 SM00490 helicase superfamily c-terminal domain CKF48_17755 SM00518 AP endonuclease family 2 CKF48_17765 SM00382 ATPases associated with a variety of cellular activities CKF48_17845 SM00382 ATPases associated with a variety of cellular activities CKF48_17910 SM00028 Tetratricopeptide repeats CKF48_17930 SM00257 Lysin motif CKF48_17930 SM00631 CKF48_17930 CKF48_17950 SM00849 Metallo-beta-lactamase superfamily CKF48_18015 SM00487 DEAD-like helicases superfamily CKF48_18015 SM00490 helicase superfamily c-terminal domain CKF48_18035 SM00450 Rhodanese Homology Domain CKF48_18080 SM00841 Elongation factor P, C-terminal CKF48_18080 SM01185 CKF48_18080 CKF48_18090 SM00098 Alkaline phosphatase homologues CKF48_18140 SM00878 Biotin carboxylase C-terminal domain CKF48_18170 SM00861 Transketolase, pyrimidine binding domain CKF48_18175 SM00363 S4 RNA-binding domain CKF48_18190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CKF48_18195 SM00448 cheY-homologous receiver domain CKF48_18240 SM00530 Helix-turn-helix XRE-family like proteins CKF48_18275 SM01040 BRO family, N-terminal domain CKF48_18300 SM00091 PAS domain CKF48_18300 SM00382 ATPases associated with a variety of cellular activities CKF48_18310 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CKF48_18330 SM00861 Transketolase, pyrimidine binding domain CKF48_18360 SM00062 Bacterial periplasmic substrate-binding proteins CKF48_18360 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CKF48_18370 SM00382 ATPases associated with a variety of cellular activities CKF48_18400 SM00260 Two component signalling adaptor domain CKF48_18430 SM00849 Metallo-beta-lactamase superfamily CKF48_18575 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CKF48_18580 SM00936 Penicillin-binding protein 5, C-terminal domain CKF48_18590 SM00387 Histidine kinase-like ATPases CKF48_18680 SM00363 S4 RNA-binding domain CKF48_18700 SM00448 cheY-homologous receiver domain CKF48_18700 SM00862 Transcriptional regulatory protein, C terminal CKF48_18705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_18705 SM00387 Histidine kinase-like ATPases CKF48_18705 SM00388 His Kinase A (phosphoacceptor) domain CKF48_18720 SM00257 Lysin motif CKF48_18760 SM00257 Lysin motif CKF48_18780 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CKF48_18790 SM00870 CKF48_18790 CKF48_18825 SM00563 Phosphate acyltransferases CKF48_18830 SM00316 Ribosomal protein S1-like RNA-binding domain CKF48_18835 SM01240 CKF48_18835 CKF48_18885 SM00411 bacterial (prokaryotic) histone like domain CKF48_18915 SM00562 CKF48_18915 CKF48_18920 SM00138 Methyltransferase, chemotaxis proteins CKF48_18960 SM00028 Tetratricopeptide repeats CKF48_18965 SM00914 CKF48_18965 CKF48_19030 SM00851 MGS-like domain CKF48_19070 SM00327 von Willebrand factor (vWF) type A domain CKF48_19075 SM00479 CKF48_19075 CKF48_19075 SM00491 CKF48_19075 CKF48_19105 SM00478 endonuclease III CKF48_19105 SM00525 CKF48_19105 CKF48_19160 SM00487 DEAD-like helicases superfamily CKF48_19160 SM00490 helicase superfamily c-terminal domain CKF48_19195 SM00981 CKF48_19195 CKF48_19200 SM00491 CKF48_19200 CKF48_19245 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CKF48_19245 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CKF48_19285 SM00450 Rhodanese Homology Domain CKF48_19290 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CKF48_19290 SM00475 5'-3' exonuclease CKF48_19330 SM00357 Cold shock protein domain CKF48_19360 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CKF48_19360 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CKF48_19360 SM00493 CKF48_19360 CKF48_19365 SM00529 Helix-turn-helix diphteria tox regulatory element CKF48_19395 SM00382 ATPases associated with a variety of cellular activities CKF48_19400 SM00567 E-Z type HEAT repeats CKF48_19400 SM00932 Scaffold protein Nfu/NifU N terminal CKF48_19545 SM00346 helix_turn_helix isocitrate lyase regulation CKF48_19575 SM00882 Coenzyme A transferase CKF48_19580 SM00882 Coenzyme A transferase CKF48_19600 SM00091 PAS domain CKF48_19600 SM00382 ATPases associated with a variety of cellular activities CKF48_19620 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_19620 SM00866 CKF48_19620 CKF48_19650 SM00849 Metallo-beta-lactamase superfamily CKF48_19695 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CKF48_19695 SM00245 tail specific protease CKF48_19720 SM00833 Cobalamin synthesis protein cobW C-terminal domain CKF48_19745 SM00448 cheY-homologous receiver domain CKF48_19745 SM00862 Transcriptional regulatory protein, C terminal CKF48_19750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_19750 SM00387 Histidine kinase-like ATPases CKF48_19750 SM00388 His Kinase A (phosphoacceptor) domain CKF48_19760 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_19765 SM00822 CKF48_19765 CKF48_19850 SM00354 helix_turn _helix lactose operon repressor CKF48_19940 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CKF48_19945 SM00014 Acid phosphatase homologues CKF48_19965 SM00357 Cold shock protein domain CKF48_19970 SM00487 DEAD-like helicases superfamily CKF48_19970 SM00490 helicase superfamily c-terminal domain CKF48_19975 SM00357 Cold shock protein domain CKF48_20045 SM00448 cheY-homologous receiver domain CKF48_20045 SM00862 Transcriptional regulatory protein, C terminal CKF48_20050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CKF48_20050 SM00387 Histidine kinase-like ATPases CKF48_20050 SM00388 His Kinase A (phosphoacceptor) domain CKF48_20075 SM00091 PAS domain CKF48_20075 SM00382 ATPases associated with a variety of cellular activities CKF48_20110 SM01240 CKF48_20110 CKF48_20185 SM01060 CKF48_20185 CKF48_20200 SM00422 helix_turn_helix, mercury resistance CKF48_20220 SM00382 ATPases associated with a variety of cellular activities CKF48_20240 SM00487 DEAD-like helicases superfamily CKF48_20240 SM00490 helicase superfamily c-terminal domain CKF48_20250 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_20250 SM00895 CKF48_20250 CKF48_20280 SM00346 helix_turn_helix isocitrate lyase regulation CKF48_20300 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_20330 SM00465 GIY-YIG type nucleases (URI domain) CKF48_20350 SM00382 ATPases associated with a variety of cellular activities CKF48_20355 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CKF48_20375 SM01350 CKF48_20375 CKF48_20440 SM00855 Phosphoglycerate mutase family CKF48_20445 SM00342 helix_turn_helix, arabinose operon control protein CKF48_20580 SM00823 Phosphopantetheine attachment site CKF48_20580 SM01294 CKF48_20580 CKF48_20585 SM00923 MbtH-like protein CKF48_20655 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_20655 SM00382 ATPases associated with a variety of cellular activities CKF48_20705 SM00422 helix_turn_helix, mercury resistance CKF48_20715 SM00382 ATPases associated with a variety of cellular activities CKF48_20745 SM01092 CO dehydrogenase flavoprotein C-terminal domain CKF48_20755 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CKF48_20810 SM00450 Rhodanese Homology Domain CKF48_20830 SM00849 Metallo-beta-lactamase superfamily CKF48_20880 SM00382 ATPases associated with a variety of cellular activities CKF48_20915 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CKF48_20930 SM00387 Histidine kinase-like ATPases CKF48_20930 SM00388 His Kinase A (phosphoacceptor) domain CKF48_20935 SM00382 ATPases associated with a variety of cellular activities CKF48_20975 SM00861 Transketolase, pyrimidine binding domain CKF48_21075 SM00014 Acid phosphatase homologues CKF48_21080 SM00257 Lysin motif CKF48_21095 SM00342 helix_turn_helix, arabinose operon control protein CKF48_21140 SM00382 ATPases associated with a variety of cellular activities CKF48_21150 SM00422 helix_turn_helix, mercury resistance CKF48_21180 SM00257 Lysin motif CKF48_21215 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CKF48_21250 SM00420 helix_turn_helix, Deoxyribose operon repressor CKF48_21250 SM01134 CKF48_21250 CKF48_21255 SM00382 ATPases associated with a variety of cellular activities CKF48_21305 SM00867 YceI-like domain CKF48_21310 SM00487 DEAD-like helicases superfamily CKF48_21310 SM00490 helicase superfamily c-terminal domain CKF48_21345 SM00421 helix_turn_helix, Lux Regulon CKF48_21345 SM00448 cheY-homologous receiver domain CKF48_21420 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CKF48_21460 SM00903 Flavin reductase like domain CKF48_21465 SM00382 ATPases associated with a variety of cellular activities CKF48_21470 SM00382 ATPases associated with a variety of cellular activities CKF48_21475 SM00382 ATPases associated with a variety of cellular activities CKF48_21525 SM00833 Cobalamin synthesis protein cobW C-terminal domain CKF48_21530 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_21530 SM01091 Transporter associated domain CKF48_21535 SM00116 Domain in cystathionine beta-synthase and other proteins. CKF48_21545 SM00342 helix_turn_helix, arabinose operon control protein CKF48_21565 SM00855 Phosphoglycerate mutase family CKF48_21610 SM00421 helix_turn_helix, Lux Regulon CKF48_21630 SM00829 Enoylreductase CKF48_21645 SM00448 cheY-homologous receiver domain CKF48_21645 SM00862 Transcriptional regulatory protein, C terminal CKF48_21650 SM00387 Histidine kinase-like ATPases CKF48_21650 SM00388 His Kinase A (phosphoacceptor) domain CKF48_21655 SM00382 ATPases associated with a variety of cellular activities CKF48_21715 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_21725 SM00382 ATPases associated with a variety of cellular activities CKF48_21790 SM00450 Rhodanese Homology Domain CKF48_21795 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_21795 SM00895 CKF48_21795 CKF48_21845 SM00881 CoA binding domain CKF48_21865 SM00822 CKF48_21865 CKF48_21900 SM00382 ATPases associated with a variety of cellular activities CKF48_21970 SM00859 Semialdehyde dehydrogenase, NAD binding domain CKF48_22000 SM00382 ATPases associated with a variety of cellular activities CKF48_22085 SM00387 Histidine kinase-like ATPases CKF48_22085 SM00433 TopoisomeraseII CKF48_22090 SM00881 CoA binding domain CKF48_22095 SM01207 CKF48_22095 CKF48_22100 SM00387 Histidine kinase-like ATPases CKF48_22100 SM00388 His Kinase A (phosphoacceptor) domain CKF48_22115 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_22115 SM00895 CKF48_22115 CKF48_22135 SM00382 ATPases associated with a variety of cellular activities CKF48_22210 SM00382 ATPases associated with a variety of cellular activities CKF48_22230 SM00849 Metallo-beta-lactamase superfamily CKF48_22245 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CKF48_22275 SM00881 CoA binding domain CKF48_22300 SM00822 CKF48_22300 CKF48_22305 SM00346 helix_turn_helix isocitrate lyase regulation CKF48_22315 SM00881 CoA binding domain CKF48_22365 SM00345 helix_turn_helix gluconate operon transcriptional repressor CKF48_22365 SM00895 CKF48_22365 CKF48_22375 SM01329 CKF48_22375 CKF48_22380 SM00382 ATPases associated with a variety of cellular activities CKF48_22400 SM01060 CKF48_22400 CKF48_22515 SM00481 DNA polymerase alpha chain like domain CKF48_22555 SM00382 ATPases associated with a variety of cellular activities CKF48_22565 SM00829 Enoylreductase CKF48_22595 SM00257 Lysin motif CKF48_22605 SM00829 Enoylreductase CKF48_22615 SM00382 ATPases associated with a variety of cellular activities CKF48_22620 SM00382 ATPases associated with a variety of cellular activities CKF48_22670 SM00822 CKF48_22670 CKF48_22690 SM00822 CKF48_22690 CKF48_22700 SM00849 Metallo-beta-lactamase superfamily CKF48_22740 SM00357 Cold shock protein domain CKF48_22765 SM00919 Malic enzyme, NAD binding domain CKF48_22765 SM01274 CKF48_22765 CKF48_22825 SM00346 helix_turn_helix isocitrate lyase regulation CKF48_22860 SM00382 ATPases associated with a variety of cellular activities CKF48_22950 SM00382 ATPases associated with a variety of cellular activities CKF48_23015 SM00530 Helix-turn-helix XRE-family like proteins CKF48_23035 SM00966 SpoVT / AbrB like domain CKF48_23105 SM00857 Resolvase, N terminal domain CKF48_23135 SM00729 Elongator protein 3, MiaB family, Radical SAM CKF48_23190 SM00382 ATPases associated with a variety of cellular activities CKF48_23250 SM00382 ATPases associated with a variety of cellular activities CKF48_23365 SM00855 Phosphoglycerate mutase family CKF48_23385 SM00822 CKF48_23385 CKF48_23410 SM00347 helix_turn_helix multiple antibiotic resistance protein CKF48_23445 SM00857 Resolvase, N terminal domain CKF48_23450 SM00871 Bacterial transcription activator, effector binding domain CKF48_23470 SM00966 SpoVT / AbrB like domain CKF48_23535 SM00857 Resolvase, N terminal domain CKF48_23565 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CKF48_23565 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region