BkAM31D_00005	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
BkAM31D_00010	SM00480	DNA polymerase III beta subunit
BkAM31D_00030	SM00387	Histidine kinase-like ATPases
BkAM31D_00030	SM00433	TopoisomeraseII
BkAM31D_00035	SM00434	DNA Topoisomerase IV
BkAM31D_00040	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_00065	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_00065	SM01240	BkAM31D_00065
BkAM31D_00070	SM00936	Penicillin-binding protein 5, C-terminal domain 
BkAM31D_00095	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00100	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00145	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00155	SM00493	BkAM31D_00155
BkAM31D_00240	SM00966	SpoVT / AbrB like domain 
BkAM31D_00245	SM00933	BkAM31D_00245
BkAM31D_00270	SM01208	BkAM31D_00270
BkAM31D_00275	SM00493	BkAM31D_00275
BkAM31D_00280	SM00650	Ribosomal RNA adenine dimethylases
BkAM31D_00325	SM01400	BkAM31D_00325
BkAM31D_00345	SM00487	DEAD-like helicases superfamily
BkAM31D_00345	SM00490	helicase superfamily c-terminal domain
BkAM31D_00345	SM00982	BkAM31D_00345
BkAM31D_00345	SM01058	CarD-like/TRCF domain
BkAM31D_00350	SM00966	SpoVT / AbrB like domain 
BkAM31D_00365	SM00363	S4 RNA-binding domain
BkAM31D_00385	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_00395	SM00331	Sigma factor PP2C-like phosphatases
BkAM31D_00395	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BkAM31D_00430	SM00977	TilS substrate C-terminal domain
BkAM31D_00440	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00490	SM00905	Dihydroneopterin aldolase
BkAM31D_00570	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00570	SM01086	C-terminal, D2-small domain, of ClpB protein
BkAM31D_00575	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00585	SM00670	Large family of predicted nucleotide-binding domains
BkAM31D_00615	SM00840	BkAM31D_00615
BkAM31D_00620	SM00535	Ribonuclease III family
BkAM31D_00625	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BkAM31D_00645	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BkAM31D_00645	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BkAM31D_00650	SM00649	Ribosomal protein L11/L12
BkAM31D_00685	SM00663	RNA polymerase I subunit A N-terminus
BkAM31D_00705	SM00838	Elongation factor G C-terminus
BkAM31D_00705	SM00889	Elongation factor G, domain IV
BkAM31D_00720	SM01403	BkAM31D_00720
BkAM31D_00740	SM01382	BkAM31D_00740
BkAM31D_00740	SM01383	BkAM31D_00740
BkAM31D_00755	SM00322	K homology RNA-binding domain
BkAM31D_00775	SM01374	BkAM31D_00775
BkAM31D_00780	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BkAM31D_00845	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_00865	SM00662	RNA polymerases D
BkAM31D_00875	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_00930	SM00646	BkAM31D_00930
BkAM31D_00945	SM01251	BkAM31D_00945
BkAM31D_01095	SM00938	Nitrogen regulatory protein P-II
BkAM31D_01130	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BkAM31D_01190	SM00796	Allophanate hydrolase subunit 1
BkAM31D_01195	SM00797	Allophanate hydrolase subunit 2
BkAM31D_01250	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_01250	SM00924	MgtE intracellular N domain
BkAM31D_01305	SM01005	Alanine racemase, C-terminal domain
BkAM31D_01330	SM00387	Histidine kinase-like ATPases
BkAM31D_01335	SM00331	Sigma factor PP2C-like phosphatases
BkAM31D_01370	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_01370	SM00732	Likely ribonuclease with RNase H fold.
BkAM31D_01380	SM00731	SprT homologues.
BkAM31D_01470	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_01470	SM00924	MgtE intracellular N domain
BkAM31D_01530	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_01535	SM00881	CoA binding domain
BkAM31D_01570	SM00883	Chaperonin 10 Kd subunit
BkAM31D_01580	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_01660	SM00487	DEAD-like helicases superfamily
BkAM31D_01695	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_01700	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_01740	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_01740	SM00387	Histidine kinase-like ATPases
BkAM31D_01745	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_01745	SM00448	cheY-homologous receiver domain
BkAM31D_01785	SM00091	PAS domain
BkAM31D_01785	SM00387	Histidine kinase-like ATPases
BkAM31D_01790	SM00448	cheY-homologous receiver domain
BkAM31D_01835	SM00460	Transglutaminase/protease-like homologues
BkAM31D_01905	SM01001	AIR carboxylase
BkAM31D_01915	SM00998	Adenylosuccinate lyase C-terminus
BkAM31D_01930	SM01211	BkAM31D_01930
BkAM31D_01955	SM00798	AICARFT/IMPCHase bienzyme
BkAM31D_01955	SM00851	MGS-like domain
BkAM31D_01960	SM01209	BkAM31D_01960
BkAM31D_01960	SM01210	BkAM31D_01960
BkAM31D_02000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_02050	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BkAM31D_02050	SM00292	breast cancer carboxy-terminal domain
BkAM31D_02050	SM00532	Ligase N family
BkAM31D_02065	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_02105	SM00845	GatB domain
BkAM31D_02110	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BkAM31D_02135	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_02140	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_02240	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_02265	SM00507	HNH nucleases
BkAM31D_02495	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BkAM31D_02525	SM00644	BkAM31D_02525
BkAM31D_02575	SM00829	Enoylreductase
BkAM31D_02585	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_02590	SM00642	Alpha-amylase domain
BkAM31D_02620	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_02630	SM00450	Rhodanese Homology Domain
BkAM31D_02645	SM00450	Rhodanese Homology Domain
BkAM31D_02650	SM00450	Rhodanese Homology Domain
BkAM31D_02655	SM00450	Rhodanese Homology Domain
BkAM31D_02660	SM00450	Rhodanese Homology Domain
BkAM31D_02660	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_02780	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_02780	SM00448	cheY-homologous receiver domain
BkAM31D_02795	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BkAM31D_02815	SM00448	cheY-homologous receiver domain
BkAM31D_02820	SM00091	PAS domain
BkAM31D_02820	SM00387	Histidine kinase-like ATPases
BkAM31D_02870	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BkAM31D_02885	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_02905	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_02910	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_02935	SM00882	Coenzyme A transferase
BkAM31D_02980	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_03080	SM00267	diguanylate cyclase
BkAM31D_03100	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_03105	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_03115	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BkAM31D_03115	SM01232	BkAM31D_03115
BkAM31D_03120	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BkAM31D_03125	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_03125	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BkAM31D_03125	SM00267	diguanylate cyclase
BkAM31D_03130	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BkAM31D_03135	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BkAM31D_03205	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_03215	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_03220	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_03245	SM00257	Lysin motif
BkAM31D_03250	SM00387	Histidine kinase-like ATPases
BkAM31D_03250	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_03265	SM00642	Alpha-amylase domain
BkAM31D_03275	SM00642	Alpha-amylase domain
BkAM31D_03280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_03280	SM00866	BkAM31D_03280
BkAM31D_03295	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_03300	SM00420	helix_turn_helix, Deoxyribose operon repressor
BkAM31D_03300	SM01134	BkAM31D_03300
BkAM31D_03360	SM01061	CAT RNA binding domain
BkAM31D_03405	SM00344	helix_turn_helix ASNC type
BkAM31D_03440	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_03490	SM00855	Phosphoglycerate mutase family
BkAM31D_03615	SM00478	endonuclease III
BkAM31D_03615	SM00525	BkAM31D_03615
BkAM31D_03630	SM00829	Enoylreductase
BkAM31D_03650	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_03910	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_03940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_03940	SM00866	BkAM31D_03940
BkAM31D_03950	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BkAM31D_03975	SM01133	BkAM31D_03975
BkAM31D_03995	SM00852	Probable molybdopterin binding domain
BkAM31D_04000	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_04005	SM00852	Probable molybdopterin binding domain
BkAM31D_04090	SM00873	B3/4 domain
BkAM31D_04135	SM00763	PrkA AAA domain
BkAM31D_04155	SM00091	PAS domain
BkAM31D_04155	SM00387	Histidine kinase-like ATPases
BkAM31D_04155	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_04180	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_04195	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_04275	SM00448	cheY-homologous receiver domain
BkAM31D_04275	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_04280	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_04280	SM00387	Histidine kinase-like ATPases
BkAM31D_04280	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_04320	SM00878	Biotin carboxylase C-terminal domain
BkAM31D_04420	SM00448	cheY-homologous receiver domain
BkAM31D_04420	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_04425	SM00387	Histidine kinase-like ATPases
BkAM31D_04425	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_04430	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_04460	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_04490	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_04530	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_04530	SM00387	Histidine kinase-like ATPases
BkAM31D_04535	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_04535	SM00448	cheY-homologous receiver domain
BkAM31D_04580	SM00062	Bacterial periplasmic substrate-binding proteins
BkAM31D_04590	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_04595	SM01317	BkAM31D_04595
BkAM31D_04640	SM00257	Lysin motif
BkAM31D_04655	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BkAM31D_04660	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_04685	SM01323	BkAM31D_04685
BkAM31D_04755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_04755	SM00954	Region found in RelA / SpoT proteins
BkAM31D_04870	SM00028	Tetratricopeptide repeats
BkAM31D_04875	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_04900	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BkAM31D_04910	SM00732	Likely ribonuclease with RNase H fold.
BkAM31D_04960	SM00996	S-adenosyl-L-homocysteine hydrolase
BkAM31D_04960	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BkAM31D_04995	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_04995	SM00924	MgtE intracellular N domain
BkAM31D_05005	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_05005	SM00924	MgtE intracellular N domain
BkAM31D_05045	SM00387	Histidine kinase-like ATPases
BkAM31D_05045	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_05065	SM00411	bacterial (prokaryotic) histone like domain
BkAM31D_05155	SM01103	BkAM31D_05155
BkAM31D_05165	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_05175	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_05195	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BkAM31D_05250	SM00838	Elongation factor G C-terminus
BkAM31D_05255	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_05275	SM00271	DnaJ molecular chaperone homology domain
BkAM31D_05290	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_05295	SM01133	BkAM31D_05295
BkAM31D_05300	SM00387	Histidine kinase-like ATPases
BkAM31D_05300	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_05365	SM00322	K homology RNA-binding domain
BkAM31D_05370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_05425	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_05440	SM00400	zinc finger
BkAM31D_05440	SM00493	BkAM31D_05440
BkAM31D_05490	SM00487	DEAD-like helicases superfamily
BkAM31D_05490	SM00490	helicase superfamily c-terminal domain
BkAM31D_05495	SM00518	AP endonuclease family 2
BkAM31D_05505	SM00387	Histidine kinase-like ATPases
BkAM31D_05505	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_05535	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_05720	SM00028	Tetratricopeptide repeats
BkAM31D_05885	SM00062	Bacterial periplasmic substrate-binding proteins
BkAM31D_05895	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_06035	SM00422	helix_turn_helix, mercury resistance
BkAM31D_06095	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BkAM31D_06170	SM01061	CAT RNA binding domain
BkAM31D_06205	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BkAM31D_06280	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BkAM31D_06305	SM00257	Lysin motif
BkAM31D_06320	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_06325	SM00448	cheY-homologous receiver domain
BkAM31D_06325	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_06330	SM00387	Histidine kinase-like ATPases
BkAM31D_06330	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_06360	SM00936	Penicillin-binding protein 5, C-terminal domain 
BkAM31D_06370	SM00387	Histidine kinase-like ATPases
BkAM31D_06405	SM01007	Class II Aldolase and Adducin N-terminal domain
BkAM31D_06485	SM00710	Parallel beta-helix repeats
BkAM31D_06495	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_06535	SM00710	Parallel beta-helix repeats
BkAM31D_06575	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_06585	SM00858	BkAM31D_06585
BkAM31D_06635	SM00387	Histidine kinase-like ATPases
BkAM31D_06640	SM00448	cheY-homologous receiver domain
BkAM31D_06640	SM00850	LytTr DNA-binding domain
BkAM31D_06690	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BkAM31D_06690	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_06735	SM00257	Lysin motif
BkAM31D_06770	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_06955	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_06970	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_06990	SM00493	BkAM31D_06990
BkAM31D_07010	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BkAM31D_07040	SM01240	BkAM31D_07040
BkAM31D_07050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_07055	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_07120	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BkAM31D_07135	SM00857	Resolvase, N terminal domain
BkAM31D_07145	SM00646	BkAM31D_07145
BkAM31D_07280	SM01350	BkAM31D_07280
BkAM31D_07300	SM00857	Resolvase, N terminal domain
BkAM31D_07335	SM00857	Resolvase, N terminal domain
BkAM31D_07400	SM00028	Tetratricopeptide repeats
BkAM31D_07410	SM00857	Resolvase, N terminal domain
BkAM31D_07415	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_07475	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_07475	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BkAM31D_07475	SM00267	diguanylate cyclase
BkAM31D_07540	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_07585	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_07590	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_07600	SM00422	helix_turn_helix, mercury resistance
BkAM31D_07710	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_07765	SM01329	BkAM31D_07765
BkAM31D_07775	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_07830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_07830	SM00866	BkAM31D_07830
BkAM31D_07875	SM01329	BkAM31D_07875
BkAM31D_07880	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_07900	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_07900	SM00930	BkAM31D_07900
BkAM31D_07925	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_07950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_07950	SM00895	BkAM31D_07950
BkAM31D_07955	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BkAM31D_08020	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_08030	SM00895	BkAM31D_08030
BkAM31D_08080	SM00387	Histidine kinase-like ATPases
BkAM31D_08085	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_08085	SM00448	cheY-homologous receiver domain
BkAM31D_08105	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_08150	SM00640	Glycosyl hydrolases family 32
BkAM31D_08160	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_08170	SM00448	cheY-homologous receiver domain
BkAM31D_08170	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_08175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_08175	SM00387	Histidine kinase-like ATPases
BkAM31D_08175	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_08250	SM01130	BkAM31D_08250
BkAM31D_08265	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_08285	SM00903	Flavin reductase like domain
BkAM31D_08320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_08325	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_08350	SM00450	Rhodanese Homology Domain
BkAM31D_08370	SM00903	Flavin reductase like domain
BkAM31D_08375	SM00989	BkAM31D_08375
BkAM31D_08455	SM00091	PAS domain
BkAM31D_08455	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_08465	SM00893	Electron transfer flavoprotein domain
BkAM31D_08475	SM00893	Electron transfer flavoprotein domain
BkAM31D_08500	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_08505	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_08560	SM00886	Stress responsive A/B Barrel Domain
BkAM31D_08590	SM00854	Bacterial capsule synthesis protein PGA_cap
BkAM31D_08595	SM00854	Bacterial capsule synthesis protein PGA_cap
BkAM31D_08600	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BkAM31D_08615	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_08620	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BkAM31D_08625	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_08630	SM00854	Bacterial capsule synthesis protein PGA_cap
BkAM31D_08675	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BkAM31D_08680	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_08845	SM00829	Enoylreductase
BkAM31D_08870	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_08875	SM00487	DEAD-like helicases superfamily
BkAM31D_08895	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_08965	SM00881	CoA binding domain
BkAM31D_08980	SM00893	Electron transfer flavoprotein domain
BkAM31D_08985	SM00893	Electron transfer flavoprotein domain
BkAM31D_08995	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_09010	SM00852	Probable molybdopterin binding domain
BkAM31D_09015	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BkAM31D_09025	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BkAM31D_09125	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_09140	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BkAM31D_09190	SM00257	Lysin motif
BkAM31D_09215	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_09265	SM00448	cheY-homologous receiver domain
BkAM31D_09270	SM00387	Histidine kinase-like ATPases
BkAM31D_09290	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_09300	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BkAM31D_09330	SM00422	helix_turn_helix, mercury resistance
BkAM31D_09345	SM00422	helix_turn_helix, mercury resistance
BkAM31D_09355	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_09375	SM00387	Histidine kinase-like ATPases
BkAM31D_09380	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_09380	SM00448	cheY-homologous receiver domain
BkAM31D_09500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_09505	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_09505	SM00448	cheY-homologous receiver domain
BkAM31D_09530	SM00560	LamG-like jellyroll fold domain
BkAM31D_09530	SM00640	Glycosyl hydrolases family 32
BkAM31D_09540	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_09570	SM00640	Glycosyl hydrolases family 32
BkAM31D_09600	SM00220	Serine/Threonine protein kinases, catalytic domain
BkAM31D_09715	SM00487	DEAD-like helicases superfamily
BkAM31D_09715	SM00490	helicase superfamily c-terminal domain
BkAM31D_09765	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_09790	SM00479	BkAM31D_09790
BkAM31D_09795	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_09805	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_09825	SM01120	BkAM31D_09825
BkAM31D_09830	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_09830	SM00448	cheY-homologous receiver domain
BkAM31D_09835	SM00387	Histidine kinase-like ATPases
BkAM31D_09930	SM00357	Cold shock protein domain
BkAM31D_09935	SM00487	DEAD-like helicases superfamily
BkAM31D_09935	SM00490	helicase superfamily c-terminal domain
BkAM31D_09980	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_09995	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_10080	SM00331	Sigma factor PP2C-like phosphatases
BkAM31D_10090	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BkAM31D_10100	SM00387	Histidine kinase-like ATPases
BkAM31D_10100	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_10105	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_10115	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BkAM31D_10115	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_10120	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_10125	SM00481	DNA polymerase alpha chain like domain
BkAM31D_10150	SM00257	Lysin motif
BkAM31D_10410	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_10455	SM00860	SMI1 / KNR4 family
BkAM31D_10460	SM00487	DEAD-like helicases superfamily
BkAM31D_10460	SM00490	helicase superfamily c-terminal domain
BkAM31D_10490	SM01126	BkAM31D_10490
BkAM31D_10600	SM00363	S4 RNA-binding domain
BkAM31D_10625	SM00448	cheY-homologous receiver domain
BkAM31D_10625	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_10695	SM00855	Phosphoglycerate mutase family
BkAM31D_10730	SM00257	Lysin motif
BkAM31D_10740	SM00257	Lysin motif
BkAM31D_10740	SM00631	BkAM31D_10740
BkAM31D_10745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_10745	SM00895	BkAM31D_10745
BkAM31D_10760	SM00487	DEAD-like helicases superfamily
BkAM31D_10760	SM00490	helicase superfamily c-terminal domain
BkAM31D_10810	SM00422	helix_turn_helix, mercury resistance
BkAM31D_10820	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BkAM31D_10830	SM00870	BkAM31D_10830
BkAM31D_10860	SM01018	B12 binding domain
BkAM31D_10890	SM00563	Phosphate acyltransferases
BkAM31D_10895	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_10920	SM01207	BkAM31D_10920
BkAM31D_10985	SM00562	BkAM31D_10985
BkAM31D_10990	SM00138	Methyltransferase, chemotaxis proteins 
BkAM31D_11065	SM00028	Tetratricopeptide repeats
BkAM31D_11070	SM00914	BkAM31D_11070
BkAM31D_11125	SM00851	MGS-like domain
BkAM31D_11175	SM00028	Tetratricopeptide repeats
BkAM31D_11180	SM00487	DEAD-like helicases superfamily
BkAM31D_11180	SM00491	BkAM31D_11180
BkAM31D_11215	SM00478	endonuclease III
BkAM31D_11215	SM00525	BkAM31D_11215
BkAM31D_11235	SM00060	Fibronectin type 3 domain
BkAM31D_11320	SM00567	E-Z type HEAT repeats
BkAM31D_11320	SM00932	Scaffold protein Nfu/NifU N terminal
BkAM31D_11345	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_11415	SM01298	BkAM31D_11415
BkAM31D_11455	SM01130	BkAM31D_11455
BkAM31D_11505	SM00357	Cold shock protein domain
BkAM31D_11530	SM00487	DEAD-like helicases superfamily
BkAM31D_11530	SM00490	helicase superfamily c-terminal domain
BkAM31D_11570	SM00981	BkAM31D_11570
BkAM31D_11620	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_11625	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_11635	SM00479	BkAM31D_11635
BkAM31D_11645	SM00100	Cyclic nucleotide-monophosphate binding domain
BkAM31D_11645	SM00419	helix_turn_helix, cAMP Regulatory protein
BkAM31D_11655	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_11665	SM00829	Enoylreductase
BkAM31D_11690	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_11705	SM00014	Acid phosphatase homologues
BkAM31D_11730	SM00091	PAS domain
BkAM31D_11730	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_11735	SM00882	Coenzyme A transferase
BkAM31D_11745	SM00822	BkAM31D_11745
BkAM31D_11765	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_11790	SM00881	CoA binding domain
BkAM31D_11795	SM00387	Histidine kinase-like ATPases
BkAM31D_11795	SM00433	TopoisomeraseII
BkAM31D_11800	SM00434	DNA Topoisomerase IV
BkAM31D_11880	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_11885	SM00710	Parallel beta-helix repeats
BkAM31D_11955	SM00825	Beta-ketoacyl synthase
BkAM31D_12005	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BkAM31D_12040	SM00448	cheY-homologous receiver domain
BkAM31D_12040	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_12045	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_12045	SM00387	Histidine kinase-like ATPases
BkAM31D_12045	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_12060	SM00954	Region found in RelA / SpoT proteins
BkAM31D_12100	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_12130	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_12150	SM00100	Cyclic nucleotide-monophosphate binding domain
BkAM31D_12150	SM00419	helix_turn_helix, cAMP Regulatory protein
BkAM31D_12190	SM00100	Cyclic nucleotide-monophosphate binding domain
BkAM31D_12190	SM00419	helix_turn_helix, cAMP Regulatory protein
BkAM31D_12195	SM00886	Stress responsive A/B Barrel Domain
BkAM31D_12220	SM00357	Cold shock protein domain
BkAM31D_12255	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BkAM31D_12275	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_12290	SM00387	Histidine kinase-like ATPases
BkAM31D_12290	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_12335	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_12335	SM01086	C-terminal, D2-small domain, of ClpB protein
BkAM31D_12365	SM01350	BkAM31D_12365
BkAM31D_12405	SM00882	Coenzyme A transferase
BkAM31D_12410	SM00882	Coenzyme A transferase
BkAM31D_12440	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_12445	SM00155	Phospholipase D. Active site motifs.
BkAM31D_12450	SM00257	Lysin motif
BkAM31D_12450	SM00636	BkAM31D_12450
BkAM31D_12485	SM00487	DEAD-like helicases superfamily
BkAM31D_12485	SM00490	helicase superfamily c-terminal domain
BkAM31D_12500	SM00387	Histidine kinase-like ATPases
BkAM31D_12505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_12535	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_12550	SM00357	Cold shock protein domain
BkAM31D_12580	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_12580	SM01091	Transporter associated domain
BkAM31D_12615	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BkAM31D_12660	SM01131	BkAM31D_12660
BkAM31D_12700	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_12720	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_12905	SM00450	Rhodanese Homology Domain
BkAM31D_12905	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_12920	SM00450	Rhodanese Homology Domain
BkAM31D_12925	SM00450	Rhodanese Homology Domain
BkAM31D_12930	SM00450	Rhodanese Homology Domain
BkAM31D_12965	SM00947	Carbonic anhydrase
BkAM31D_12980	SM00450	Rhodanese Homology Domain
BkAM31D_12980	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_12990	SM00450	Rhodanese Homology Domain
BkAM31D_13010	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BkAM31D_13020	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_13035	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BkAM31D_13035	SM00475	5'-3' exonuclease
BkAM31D_13060	SM00257	Lysin motif
BkAM31D_13090	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_13100	SM00487	DEAD-like helicases superfamily
BkAM31D_13100	SM00491	BkAM31D_13100
BkAM31D_13110	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_13185	SM00487	DEAD-like helicases superfamily
BkAM31D_13185	SM00490	helicase superfamily c-terminal domain
BkAM31D_13300	SM00341	Helicase and RNase D C-terminal
BkAM31D_13300	SM00487	DEAD-like helicases superfamily
BkAM31D_13300	SM00490	helicase superfamily c-terminal domain
BkAM31D_13300	SM00956	BkAM31D_13300
BkAM31D_13310	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_13340	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_13390	SM00984	UDP binding domain
BkAM31D_13565	SM00857	Resolvase, N terminal domain
BkAM31D_13670	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_13730	SM00260	Two component signalling adaptor domain
BkAM31D_13730	SM00448	cheY-homologous receiver domain
BkAM31D_13770	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_13790	SM00481	DNA polymerase alpha chain like domain
BkAM31D_13820	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_13915	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14015	SM00646	BkAM31D_14015
BkAM31D_14050	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14055	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14120	SM00479	BkAM31D_14120
BkAM31D_14155	SM00704	CDGSH-type zinc finger. Function unknown.
BkAM31D_14165	SM00014	Acid phosphatase homologues
BkAM31D_14210	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14215	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14230	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_14240	SM00857	Resolvase, N terminal domain
BkAM31D_14265	SM01230	BkAM31D_14265
BkAM31D_14315	SM00853	MutL C terminal dimerisation domain
BkAM31D_14315	SM01340	BkAM31D_14315
BkAM31D_14320	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BkAM31D_14320	SM00534	ATPase domain of DNA mismatch repair MUTS family
BkAM31D_14335	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_14385	SM00322	K homology RNA-binding domain
BkAM31D_14385	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_14410	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14415	SM00487	DEAD-like helicases superfamily
BkAM31D_14415	SM00490	helicase superfamily c-terminal domain
BkAM31D_14420	SM00852	Probable molybdopterin binding domain
BkAM31D_14460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_14460	SM00866	BkAM31D_14460
BkAM31D_14465	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14465	SM00843	BkAM31D_14465
BkAM31D_14490	SM01130	BkAM31D_14490
BkAM31D_14500	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BkAM31D_14535	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_14535	SM00322	K homology RNA-binding domain
BkAM31D_14540	SM01387	BkAM31D_14540
BkAM31D_14545	SM00904	Riboflavin kinase
BkAM31D_14580	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_14580	SM00322	K homology RNA-binding domain
BkAM31D_14605	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BkAM31D_14665	SM00448	cheY-homologous receiver domain
BkAM31D_14675	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14675	SM00962	SRP54-type protein, GTPase domain
BkAM31D_14760	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14800	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14800	SM01086	C-terminal, D2-small domain, of ClpB protein
BkAM31D_14820	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BkAM31D_14820	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BkAM31D_14820	SM00493	BkAM31D_14820
BkAM31D_14830	SM00881	CoA binding domain
BkAM31D_14905	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14905	SM00962	SRP54-type protein, GTPase domain
BkAM31D_14905	SM00963	SRP54-type protein, helical bundle domain
BkAM31D_14915	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_14915	SM00962	SRP54-type protein, GTPase domain
BkAM31D_14915	SM00963	SRP54-type protein, helical bundle domain
BkAM31D_14920	SM00968	SMC proteins Flexible Hinge Domain
BkAM31D_14930	SM00358	Double-stranded RNA binding motif
BkAM31D_14930	SM00535	Ribonuclease III family
BkAM31D_14935	SM00823	Phosphopantetheine attachment site
BkAM31D_14940	SM00822	BkAM31D_14940
BkAM31D_14945	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BkAM31D_14960	SM00487	DEAD-like helicases superfamily
BkAM31D_14960	SM00490	helicase superfamily c-terminal domain
BkAM31D_14980	SM01120	BkAM31D_14980
BkAM31D_14980	SM01121	BkAM31D_14980
BkAM31D_15005	SM00220	Serine/Threonine protein kinases, catalytic domain
BkAM31D_15005	SM00740	BkAM31D_15005
BkAM31D_15010	SM00331	Sigma factor PP2C-like phosphatases
BkAM31D_15010	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BkAM31D_15030	SM00487	DEAD-like helicases superfamily
BkAM31D_15030	SM00490	helicase superfamily c-terminal domain
BkAM31D_15040	SM01409	BkAM31D_15040
BkAM31D_15045	SM00072	Guanylate kinase homologues.
BkAM31D_15085	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BkAM31D_15100	SM00851	MGS-like domain
BkAM31D_15100	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BkAM31D_15100	SM01209	BkAM31D_15100
BkAM31D_15105	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BkAM31D_15140	SM00363	S4 RNA-binding domain
BkAM31D_15170	SM00363	S4 RNA-binding domain
BkAM31D_15215	SM00864	Tubulin/FtsZ family, GTPase domain
BkAM31D_15215	SM00865	Tubulin/FtsZ family, C-terminal domain
BkAM31D_15220	SM00842	Cell division protein FtsA
BkAM31D_15280	SM00740	BkAM31D_15280
BkAM31D_15285	SM00740	BkAM31D_15285
BkAM31D_15350	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BkAM31D_15470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_15470	SM00387	Histidine kinase-like ATPases
BkAM31D_15470	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_15475	SM00448	cheY-homologous receiver domain
BkAM31D_15475	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_15520	SM00878	Biotin carboxylase C-terminal domain
BkAM31D_15540	SM00670	Large family of predicted nucleotide-binding domains
BkAM31D_15560	SM00838	Elongation factor G C-terminus
BkAM31D_15660	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_15695	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_15705	SM00644	BkAM31D_15705
BkAM31D_15705	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
BkAM31D_15785	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
BkAM31D_15820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_15820	SM00895	BkAM31D_15820
BkAM31D_15900	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_15910	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_15935	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_15940	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_15940	SM00448	cheY-homologous receiver domain
BkAM31D_15945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_15975	SM00642	Alpha-amylase domain
BkAM31D_15980	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_16040	SM00318	Staphylococcal nuclease homologues
BkAM31D_16060	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_16065	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_16095	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_16120	SM01001	AIR carboxylase
BkAM31D_16165	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BkAM31D_16165	SM00091	PAS domain
BkAM31D_16165	SM00387	Histidine kinase-like ATPases
BkAM31D_16165	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_16165	SM00448	cheY-homologous receiver domain
BkAM31D_16170	SM00138	Methyltransferase, chemotaxis proteins 
BkAM31D_16175	SM00387	Histidine kinase-like ATPases
BkAM31D_16175	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_16175	SM00448	cheY-homologous receiver domain
BkAM31D_16180	SM00850	LytTr DNA-binding domain
BkAM31D_16190	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BkAM31D_16230	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_16250	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_16270	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_16280	SM00448	cheY-homologous receiver domain
BkAM31D_16280	SM00850	LytTr DNA-binding domain
BkAM31D_16285	SM00387	Histidine kinase-like ATPases
BkAM31D_16285	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_16285	SM00448	cheY-homologous receiver domain
BkAM31D_16305	SM01350	BkAM31D_16305
BkAM31D_16315	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BkAM31D_16325	SM00822	BkAM31D_16325
BkAM31D_16385	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_16415	SM00882	Coenzyme A transferase
BkAM31D_16420	SM00882	Coenzyme A transferase
BkAM31D_16425	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BkAM31D_16435	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_16440	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_16440	SM01091	Transporter associated domain
BkAM31D_16455	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_16455	SM01091	Transporter associated domain
BkAM31D_16475	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BkAM31D_16475	SM00091	PAS domain
BkAM31D_16475	SM00387	Histidine kinase-like ATPases
BkAM31D_16475	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_16480	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_16480	SM00091	PAS domain
BkAM31D_16480	SM00267	diguanylate cyclase
BkAM31D_16560	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_16590	SM00014	Acid phosphatase homologues
BkAM31D_16660	SM00857	Resolvase, N terminal domain
BkAM31D_16785	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_16800	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BkAM31D_16805	SM00091	PAS domain
BkAM31D_16805	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_16830	SM00448	cheY-homologous receiver domain
BkAM31D_16835	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BkAM31D_16850	SM00363	S4 RNA-binding domain
BkAM31D_16855	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_16900	SM00878	Biotin carboxylase C-terminal domain
BkAM31D_16950	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_16960	SM00841	Elongation factor P, C-terminal
BkAM31D_16960	SM01185	BkAM31D_16960
BkAM31D_16985	SM00529	Helix-turn-helix diphteria tox regulatory element
BkAM31D_17015	SM00450	Rhodanese Homology Domain
BkAM31D_17040	SM00487	DEAD-like helicases superfamily
BkAM31D_17040	SM00490	helicase superfamily c-terminal domain
BkAM31D_17055	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_17100	SM01234	BkAM31D_17100
BkAM31D_17210	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_17240	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_17290	SM00954	Region found in RelA / SpoT proteins
BkAM31D_17300	SM01118	BkAM31D_17300
BkAM31D_17330	SM00155	Phospholipase D. Active site motifs.
BkAM31D_17375	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_17405	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BkAM31D_17415	SM01007	Class II Aldolase and Adducin N-terminal domain
BkAM31D_17470	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BkAM31D_17470	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BkAM31D_17470	SM00493	BkAM31D_17470
BkAM31D_17480	SM00257	Lysin motif
BkAM31D_17495	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_17510	SM00825	Beta-ketoacyl synthase
BkAM31D_17570	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BkAM31D_17570	SM01209	BkAM31D_17570
BkAM31D_17575	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BkAM31D_17600	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BkAM31D_17665	SM00487	DEAD-like helicases superfamily
BkAM31D_17665	SM00490	helicase superfamily c-terminal domain
BkAM31D_17700	SM00450	Rhodanese Homology Domain
BkAM31D_17710	SM00909	Sporulation and spore germination
BkAM31D_17715	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_17720	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_17745	SM00914	BkAM31D_17745
BkAM31D_17760	SM00448	cheY-homologous receiver domain
BkAM31D_17765	SM00260	Two component signalling adaptor domain
BkAM31D_17770	SM00073	Histidine Phosphotransfer domain
BkAM31D_17770	SM00260	Two component signalling adaptor domain
BkAM31D_17770	SM00387	Histidine kinase-like ATPases
BkAM31D_17770	SM01231	BkAM31D_17770
BkAM31D_17775	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_17775	SM00091	PAS domain
BkAM31D_17775	SM00267	diguanylate cyclase
BkAM31D_17830	SM00014	Acid phosphatase homologues
BkAM31D_17840	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_17865	SM00091	PAS domain
BkAM31D_17865	SM00387	Histidine kinase-like ATPases
BkAM31D_17865	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_17870	SM00091	PAS domain
BkAM31D_17880	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_17890	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_17950	SM00226	Low molecular weight phosphatase family
BkAM31D_17960	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_17965	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_17995	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_18015	SM00852	Probable molybdopterin binding domain
BkAM31D_18065	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_18145	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
BkAM31D_18180	SM00257	Lysin motif
BkAM31D_18190	SM01004	Delta-aminolevulinic acid dehydratase
BkAM31D_18235	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_18240	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_18240	SM00994	ClpX C4-type zinc finger
BkAM31D_18240	SM01086	C-terminal, D2-small domain, of ClpB protein
BkAM31D_18270	SM01329	BkAM31D_18270
BkAM31D_18275	SM00917	LeuA allosteric (dimerisation) domain
BkAM31D_18340	SM00909	Sporulation and spore germination
BkAM31D_18350	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_18365	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_18410	SM00465	GIY-YIG type nucleases (URI domain)
BkAM31D_18420	SM00893	Electron transfer flavoprotein domain
BkAM31D_18425	SM00893	Electron transfer flavoprotein domain
BkAM31D_18460	SM00463	Small MutS-related domain
BkAM31D_18460	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BkAM31D_18460	SM00534	ATPase domain of DNA mismatch repair MUTS family
BkAM31D_18485	SM00873	B3/4 domain
BkAM31D_18485	SM00874	tRNA synthetase B5 domain
BkAM31D_18485	SM00896	Ferredoxin-fold anticodon binding domain
BkAM31D_18500	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BkAM31D_18555	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BkAM31D_18575	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_18580	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_18600	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BkAM31D_18615	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BkAM31D_18615	SM01232	BkAM31D_18615
BkAM31D_18630	SM00244	prohibitin homologues
BkAM31D_18635	SM00244	prohibitin homologues
BkAM31D_18640	SM00091	PAS domain
BkAM31D_18640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_18640	SM00387	Histidine kinase-like ATPases
BkAM31D_18640	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_18645	SM00448	cheY-homologous receiver domain
BkAM31D_18645	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_18655	SM01329	BkAM31D_18655
BkAM31D_18700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_18700	SM00895	BkAM31D_18700
BkAM31D_18705	SM00919	Malic enzyme, NAD binding domain
BkAM31D_18705	SM01274	BkAM31D_18705
BkAM31D_18710	SM00481	DNA polymerase alpha chain like domain
BkAM31D_18755	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_18870	SM00981	BkAM31D_18870
BkAM31D_18900	SM00363	S4 RNA-binding domain
BkAM31D_18900	SM01390	BkAM31D_18900
BkAM31D_18905	SM00363	S4 RNA-binding domain
BkAM31D_18930	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_18955	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_18960	SM00830	Chorismate mutase type II
BkAM31D_18990	SM00843	BkAM31D_18990
BkAM31D_19040	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_19060	SM00642	Alpha-amylase domain
BkAM31D_19105	SM00420	helix_turn_helix, Deoxyribose operon repressor
BkAM31D_19110	SM00363	S4 RNA-binding domain
BkAM31D_19165	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_19175	SM00947	Carbonic anhydrase
BkAM31D_19225	SM00014	Acid phosphatase homologues
BkAM31D_19245	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_19285	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_19350	SM01329	BkAM31D_19350
BkAM31D_19365	SM00448	cheY-homologous receiver domain
BkAM31D_19370	SM00387	Histidine kinase-like ATPases
BkAM31D_19400	SM00450	Rhodanese Homology Domain
BkAM31D_19415	SM00098	Alkaline phosphatase homologues
BkAM31D_19470	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_19565	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_19595	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_19660	SM00857	Resolvase, N terminal domain
BkAM31D_19705	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_19710	SM00487	DEAD-like helicases superfamily
BkAM31D_19710	SM00490	helicase superfamily c-terminal domain
BkAM31D_19725	SM00344	helix_turn_helix ASNC type
BkAM31D_19745	SM00411	bacterial (prokaryotic) histone like domain
BkAM31D_19765	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_19770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_19845	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_19850	SM00631	BkAM31D_19850
BkAM31D_19925	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BkAM31D_19925	SM00091	PAS domain
BkAM31D_19925	SM00387	Histidine kinase-like ATPases
BkAM31D_19925	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_19935	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_19935	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_19965	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_20095	SM00387	Histidine kinase-like ATPases
BkAM31D_20095	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_20130	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_20175	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_20200	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_20200	SM00930	BkAM31D_20200
BkAM31D_20360	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_20360	SM00387	Histidine kinase-like ATPases
BkAM31D_20360	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_20385	SM00316	Ribosomal protein S1-like RNA-binding domain
BkAM31D_20385	SM00357	Cold shock protein domain
BkAM31D_20385	SM00955	BkAM31D_20385
BkAM31D_20420	SM00422	helix_turn_helix, mercury resistance
BkAM31D_20445	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_20490	SM01192	BkAM31D_20490
BkAM31D_20490	SM01193	BkAM31D_20490
BkAM31D_20510	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BkAM31D_20565	SM00028	Tetratricopeptide repeats
BkAM31D_20665	SM00487	DEAD-like helicases superfamily
BkAM31D_20665	SM00490	helicase superfamily c-terminal domain
BkAM31D_20675	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BkAM31D_20680	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BkAM31D_20680	SM00245	tail specific protease
BkAM31D_20695	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_20710	SM00937	BkAM31D_20710
BkAM31D_20715	SM00957	SecA DEAD-like domain
BkAM31D_20715	SM00958	SecA preprotein cross-linking domain
BkAM31D_20760	SM00357	Cold shock protein domain
BkAM31D_20845	SM00633	Glycosyl hydrolase family 10
BkAM31D_20915	SM00490	helicase superfamily c-terminal domain
BkAM31D_20955	SM00644	BkAM31D_20955
BkAM31D_21000	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BkAM31D_21105	SM00507	HNH nucleases
BkAM31D_21235	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_21310	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_21315	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_21335	SM00857	Resolvase, N terminal domain
BkAM31D_21345	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_21345	SM00448	cheY-homologous receiver domain
BkAM31D_21350	SM00387	Histidine kinase-like ATPases
BkAM31D_21370	SM00257	Lysin motif
BkAM31D_21390	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_21410	SM00047	Lysozyme subfamily 2
BkAM31D_21410	SM00287	Bacterial SH3 domain homologues
BkAM31D_21415	SM00631	BkAM31D_21415
BkAM31D_21425	SM00646	BkAM31D_21425
BkAM31D_21430	SM00984	UDP binding domain
BkAM31D_21445	SM01209	BkAM31D_21445
BkAM31D_21450	SM01209	BkAM31D_21450
BkAM31D_21470	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_21500	SM00028	Tetratricopeptide repeats
BkAM31D_21515	SM01209	BkAM31D_21515
BkAM31D_21550	SM00267	diguanylate cyclase
BkAM31D_21565	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_21640	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_21680	SM00091	PAS domain
BkAM31D_21680	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_21760	SM01266	BkAM31D_21760
BkAM31D_21770	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_21770	SM00267	diguanylate cyclase
BkAM31D_21770	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_21780	SM00267	diguanylate cyclase
BkAM31D_21785	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_21785	SM00267	diguanylate cyclase
BkAM31D_21810	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BkAM31D_21825	SM00257	Lysin motif
BkAM31D_21830	SM00257	Lysin motif
BkAM31D_21855	SM00091	PAS domain
BkAM31D_21855	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_21950	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_22070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_22175	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_22205	SM01022	BkAM31D_22205
BkAM31D_22315	SM01060	BkAM31D_22315
BkAM31D_22375	SM01321	BkAM31D_22375
BkAM31D_22385	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_22395	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_22420	SM00421	helix_turn_helix, Lux Regulon
BkAM31D_22420	SM00448	cheY-homologous receiver domain
BkAM31D_22455	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_22455	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_22465	SM00642	Alpha-amylase domain
BkAM31D_22500	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_22545	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BkAM31D_22545	SM00866	BkAM31D_22545
BkAM31D_22550	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_22560	SM00062	Bacterial periplasmic substrate-binding proteins
BkAM31D_22560	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BkAM31D_22590	SM01321	BkAM31D_22590
BkAM31D_22620	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_22665	SM00631	BkAM31D_22665
BkAM31D_22685	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_22725	SM00984	UDP binding domain
BkAM31D_22905	SM00420	helix_turn_helix, Deoxyribose operon repressor
BkAM31D_22905	SM01134	BkAM31D_22905
BkAM31D_22915	SM00861	Transketolase, pyrimidine binding domain
BkAM31D_22925	SM01120	BkAM31D_22925
BkAM31D_23000	SM00098	Alkaline phosphatase homologues
BkAM31D_23005	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_23020	SM00422	helix_turn_helix, mercury resistance
BkAM31D_23045	SM00100	Cyclic nucleotide-monophosphate binding domain
BkAM31D_23115	SM01117	BkAM31D_23115
BkAM31D_23160	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_23160	SM00871	Bacterial transcription activator, effector binding domain
BkAM31D_23205	SM00052	Putative diguanylate phosphodiesterase
BkAM31D_23205	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BkAM31D_23205	SM00091	PAS domain
BkAM31D_23205	SM00267	diguanylate cyclase
BkAM31D_23250	SM00871	Bacterial transcription activator, effector binding domain
BkAM31D_23270	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_23275	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_23390	SM00882	Coenzyme A transferase
BkAM31D_23395	SM00882	Coenzyme A transferase
BkAM31D_23415	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BkAM31D_23420	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_23440	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_23480	SM00893	Electron transfer flavoprotein domain
BkAM31D_23560	SM00346	helix_turn_helix isocitrate lyase regulation
BkAM31D_23565	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_23590	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_23605	SM00354	helix_turn _helix lactose operon repressor
BkAM31D_23640	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BkAM31D_23645	SM00387	Histidine kinase-like ATPases
BkAM31D_23645	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_23830	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_23835	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_23905	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_23910	SM00829	Enoylreductase
BkAM31D_23930	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_23930	SM01091	Transporter associated domain
BkAM31D_23940	SM00448	cheY-homologous receiver domain
BkAM31D_23940	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_23945	SM00387	Histidine kinase-like ATPases
BkAM31D_23950	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_23980	SM00854	Bacterial capsule synthesis protein PGA_cap
BkAM31D_24025	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_24025	SM00387	Histidine kinase-like ATPases
BkAM31D_24025	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_24030	SM00448	cheY-homologous receiver domain
BkAM31D_24030	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_24045	SM00267	diguanylate cyclase
BkAM31D_24045	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_24110	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BkAM31D_24110	SM00091	PAS domain
BkAM31D_24110	SM00387	Histidine kinase-like ATPases
BkAM31D_24110	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_24140	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BkAM31D_24140	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_24150	SM00850	LytTr DNA-binding domain
BkAM31D_24265	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_24310	SM00479	BkAM31D_24310
BkAM31D_24315	SM00116	Domain in cystathionine beta-synthase and other proteins.
BkAM31D_24370	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_24450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BkAM31D_24450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_24455	SM00226	Low molecular weight phosphatase family
BkAM31D_24485	SM00937	BkAM31D_24485
BkAM31D_24510	SM00363	S4 RNA-binding domain
BkAM31D_24520	SM00347	helix_turn_helix multiple antibiotic resistance protein
BkAM31D_24525	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_24530	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_24565	SM00988	UreE urease accessory protein, N-terminal domain
BkAM31D_24595	SM00357	Cold shock protein domain
BkAM31D_24595	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_24595	SM00959	Rho termination factor, N-terminal domain
BkAM31D_24620	SM00448	cheY-homologous receiver domain
BkAM31D_24675	SM00155	Phospholipase D. Active site motifs.
BkAM31D_24695	SM00836	DALR anticodon binding domain
BkAM31D_24695	SM01016	Arginyl tRNA synthetase N terminal dom
BkAM31D_24725	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BkAM31D_24775	SM00422	helix_turn_helix, mercury resistance
BkAM31D_24780	SM00479	BkAM31D_24780
BkAM31D_24795	SM00986	Uracil DNA glycosylase superfamily
BkAM31D_24795	SM00987	UreE urease accessory protein, C-terminal domain 
BkAM31D_24805	SM00342	helix_turn_helix, arabinose operon control protein
BkAM31D_24835	SM01230	BkAM31D_24835
BkAM31D_24840	SM00487	DEAD-like helicases superfamily
BkAM31D_24840	SM00490	helicase superfamily c-terminal domain
BkAM31D_24850	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BkAM31D_24855	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BkAM31D_24855	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BkAM31D_24855	SM00493	BkAM31D_24855
BkAM31D_24905	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_24940	SM00914	BkAM31D_24940
BkAM31D_24975	SM00387	Histidine kinase-like ATPases
BkAM31D_24975	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_24985	SM00729	Elongator protein 3, MiaB family, Radical SAM
BkAM31D_25010	SM00530	Helix-turn-helix XRE-family like proteins 
BkAM31D_25020	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BkAM31D_25020	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BkAM31D_25025	SM01005	Alanine racemase, C-terminal domain
BkAM31D_25030	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BkAM31D_25130	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_25140	SM00363	S4 RNA-binding domain
BkAM31D_25160	SM00382	ATPases associated with a variety of cellular activities
BkAM31D_25190	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BkAM31D_25195	SM00849	Metallo-beta-lactamase superfamily
BkAM31D_25210	SM00091	PAS domain
BkAM31D_25210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BkAM31D_25210	SM00387	Histidine kinase-like ATPases
BkAM31D_25210	SM00388	His Kinase A (phosphoacceptor) domain
BkAM31D_25215	SM00448	cheY-homologous receiver domain
BkAM31D_25215	SM00862	Transcriptional regulatory protein, C terminal
BkAM31D_25220	SM00257	Lysin motif
BkAM31D_25220	SM01208	BkAM31D_25220
BkAM31D_25250	SM00788	Adenylosuccinate synthetase
BkAM31D_25265	SM00267	diguanylate cyclase
BkAM31D_25280	SM01350	BkAM31D_25280
BkAM31D_25335	SM00470	ParB-like nuclease domain
BkAM31D_25345	SM00470	ParB-like nuclease domain
BkAM31D_25355	SM01228	BkAM31D_25355
BkAM31D_25365	SM00393	Putative single-stranded nucleic acids-binding domain
BkAM31D_25365	SM01245	BkAM31D_25365
