locus-tag class description BLi00001 PF00308 Bacterial dnaA protein BLi00001 PF11638 DnaA N-terminal domain BLi00001 PF08299 Bacterial dnaA protein helix-turn-helix BLi00002 PF00712 DNA polymerase III beta subunit, N-terminal domain BLi00002 PF02767 DNA polymerase III beta subunit, central domain BLi00002 PF02768 DNA polymerase III beta subunit, C-terminal domain BLi00004 PF02463 RecF/RecN/SMC N terminal domain BLi00005 PF04025 Domain of unknown function (DUF370) BLi00006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00006 PF01751 Toprim domain BLi00006 PF00204 DNA gyrase B BLi00006 PF00986 DNA gyrase B subunit, carboxyl terminus BLi00007 PF00521 DNA gyrase/topoisomerase IV, subunit A BLi00007 PF03989 DNA gyrase C-terminal domain, beta-propeller BLi00013 PF14175 YaaC-like Protein BLi00014 PF00478 IMP dehydrogenase / GMP reductase domain BLi00014 PF00571 CBS domain BLi00015 PF07943 Penicillin-binding protein 5, C-terminal domain BLi00015 PF00768 D-alanyl-D-alanine carboxypeptidase BLi00016 PF01680 SOR/SNZ family BLi00017 PF01174 SNO glutamine amidotransferase family BLi00018 PF02403 Seryl-tRNA synthetase N-terminal domain BLi00018 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BLi00019 PF02447 GntP family permease BLi00020 PF13556 PucR C-terminal helix-turn-helix domain BLi00020 PF05651 Putative sugar diacid recognition BLi00020 PF17853 GGDEF-like domain BLi00023 PF01712 Deoxynucleoside kinase BLi00024 PF01712 Deoxynucleoside kinase BLi00025 PF00704 Glycosyl hydrolases family 18 BLi00025 PF01476 LysM domain BLi00026 PF00857 Isochorismatase family BLi00027 PF14437 MafB19-like deaminase BLi00028 PF12169 DNA polymerase III subunits gamma and tau domain III BLi00029 PF02575 YbaB/EbfC DNA-binding family BLi00030 PF02132 RecR protein BLi00030 PF13662 Toprim domain BLi00031 PF10704 Protein of unknown function (DUF2508) BLi00032 PF07441 SigmaK-factor processing regulatory protein BofA BLi00038 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein BLi00039 PF05816 Toxic anion resistance protein (TelA) BLi00040 PF01276 Orn/Lys/Arg decarboxylase, major domain BLi00040 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BLi00041 PF02223 Thymidylate kinase BLi00042 PF06153 Cyclic-di-AMP receptor BLi00043 PF03885 Protein of unknown function (DUF327) BLi00044 PF09115 DNA polymerase III, delta subunit, C terminal BLi00045 PF04468 PSP1 C-terminal conserved region BLi00046 PF06156 Initiation control protein YabA BLi00047 PF05175 Methyltransferase small domain BLi00048 PF01541 GIY-YIG catalytic domain BLi00049 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BLi00050 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BLi00050 PF18277 AbrB C-terminal domain BLi00051 PF08264 Anticodon-binding domain of tRNA BLi00051 PF01588 Putative tRNA binding domain BLi00051 PF09334 tRNA synthetases class I (M) BLi00052 PF01026 TatD related DNase BLi00053 PF06725 3D domain BLi00053 PF03990 G5-linked-Ubiquitin-like domain BLi00053 PF07501 G5 domain BLi00054 PF13662 Toprim domain BLi00054 PF13331 Domain of unknown function (DUF4093) BLi00055 PF00398 Ribosomal RNA adenine dimethylase BLi00056 PF05582 YabG peptidase U57 BLi00057 PF06257 Biofilm formation stimulator VEG BLi00058 PF00269 Small, acid-soluble spore proteins, alpha/beta type BLi00059 PF00288 GHMP kinases N terminal domain BLi00059 PF08544 GHMP kinases C terminal BLi00060 PF09182 Bacterial purine repressor, N-terminal BLi00060 PF00156 Phosphoribosyl transferase domain BLi00061 PF01042 Endoribonuclease L-PSP BLi00062 PF04026 SpoVG BLi00063 PF00483 Nucleotidyl transferase BLi00063 PF00132 Bacterial transferase hexapeptide (six repeats) BLi00064 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BLi00064 PF14572 Phosphoribosyl synthetase-associated domain BLi00065 PF14693 Ribosomal protein TL5, C-terminal domain BLi00065 PF01386 Ribosomal L25p family BLi00066 PF01195 Peptidyl-tRNA hydrolase BLi00067 PF10955 Protein of unknown function (DUF2757) BLi00068 PF02559 CarD-like/TRCF domain BLi00068 PF00270 DEAD/DEAH box helicase BLi00068 PF00271 Helicase conserved C-terminal domain BLi00068 PF17757 UvrB interaction domain BLi00068 PF03461 TRCF domain BLi00069 PF15714 Stage V sporulation protein T C-terminal, transcription factor BLi00069 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BLi00070 PF01943 Polysaccharide biosynthesis protein BLi00070 PF14667 Polysaccharide biosynthesis C-terminal domain BLi00071 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BLi00071 PF03819 MazG nucleotide pyrophosphohydrolase domain BLi00072 PF01479 S4 domain BLi00073 PF07873 YabP family BLi00074 PF09578 Spore cortex protein YabQ (Spore_YabQ) BLi00075 PF04977 Septum formation initiator BLi00076 PF00575 S1 RNA binding domain BLi00080 PF07228 Stage II sporulation protein E (SpoIIE) BLi00081 PF00092 von Willebrand factor type A domain BLi00082 PF00069 Protein kinase domain BLi00083 PF01171 PP-loop family BLi00083 PF11734 TilS substrate C-terminal domain BLi00083 PF09179 TilS substrate binding domain BLi00085 PF00004 ATPase family associated with various cellular activities (AAA) BLi00085 PF17862 AAA+ lid domain BLi00085 PF06480 FtsH Extracellular BLi00085 PF01434 Peptidase family M41 BLi00086 PF03309 Type III pantothenate kinase BLi00087 PF01430 Hsp33 protein BLi00088 PF13145 PPIC-type PPIASE domain BLi00089 PF00291 Pyridoxal-phosphate dependent enzyme BLi00090 PF04715 Anthranilate synthase component I, N terminal region BLi00090 PF00425 chorismate binding enzyme BLi00091 PF00117 Glutamine amidotransferase class-I BLi00092 PF01063 Amino-transferase class IV BLi00093 PF00809 Pterin binding enzyme BLi00094 PF02152 Dihydroneopterin aldolase BLi00095 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BLi00096 PF01207 Dihydrouridine synthase (Dus) BLi00097 PF00152 tRNA synthetases class II (D, K and N) BLi00097 PF01336 OB-fold nucleic acid binding domain BLi00101 PF05848 CtsR N-terminal HTH domain BLi00101 PF17727 CtsR C-terminal dimerization domain BLi00102 PF02151 UvrB/uvrC motif BLi00103 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BLi00104 PF02861 Clp amino terminal domain, pathogenicity island component BLi00104 PF00004 ATPase family associated with various cellular activities (AAA) BLi00104 PF07724 AAA domain (Cdc48 subfamily) BLi00104 PF17871 AAA lid domain BLi00104 PF10431 C-terminal, D2-small domain, of ClpB protein BLi00105 PF18073 Rubredoxin metal binding domain BLi00106 PF10635 DisA bacterial checkpoint controller linker region BLi00106 PF02457 DisA bacterial checkpoint controller nucleotide-binding BLi00108 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BLi00109 PF02542 YgbB family BLi00110 PF00749 tRNA synthetases class I (E and Q), catalytic domain BLi00111 PF00132 Bacterial transferase hexapeptide (six repeats) BLi00112 PF01406 tRNA synthetases class I (C) catalytic domain BLi00112 PF09190 DALR domain BLi00113 PF00636 Ribonuclease III domain BLi00114 PF08032 RNA 2'-O ribose methyltransferase substrate binding BLi00114 PF00588 SpoU rRNA Methylase family BLi00115 PF05991 YacP-like NYN domain BLi00116 PF08281 Sigma-70, region 4 BLi00116 PF04542 Sigma-70 region 2 BLi00117 PF00471 Ribosomal protein L33 BLi00118 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BLi00119 PF00467 KOW motif BLi00119 PF02357 Transcription termination factor nusG BLi00120 PF00298 Ribosomal protein L11, RNA binding domain BLi00120 PF03946 Ribosomal protein L11, N-terminal domain BLi00121 PF00687 Ribosomal protein L1p/L10e family BLi00122 PF00466 Ribosomal protein L10 BLi00123 PF00542 Ribosomal protein L7/L12 C-terminal domain BLi00123 PF16320 Ribosomal protein L7/L12 dimerisation domain BLi00124 PF05175 Methyltransferase small domain BLi00125 PF04563 RNA polymerase beta subunit BLi00125 PF04561 RNA polymerase Rpb2, domain 2 BLi00125 PF10385 RNA polymerase beta subunit external 1 domain BLi00125 PF04565 RNA polymerase Rpb2, domain 3 BLi00125 PF00562 RNA polymerase Rpb2, domain 6 BLi00125 PF04560 RNA polymerase Rpb2, domain 7 BLi00126 PF00623 RNA polymerase Rpb1, domain 2 BLi00126 PF04983 RNA polymerase Rpb1, domain 3 BLi00126 PF04997 RNA polymerase Rpb1, domain 1 BLi00126 PF05000 RNA polymerase Rpb1, domain 4 BLi00126 PF04998 RNA polymerase Rpb1, domain 5 BLi00127 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BLi00128 PF00164 Ribosomal protein S12/S23 BLi00129 PF00177 Ribosomal protein S7p/S5e BLi00130 PF03144 Elongation factor Tu domain 2 BLi00130 PF03764 Elongation factor G, domain IV BLi00130 PF14492 Elongation Factor G, domain II BLi00130 PF00679 Elongation factor G C-terminus BLi00130 PF00009 Elongation factor Tu GTP binding domain BLi00131 PF00009 Elongation factor Tu GTP binding domain BLi00131 PF03143 Elongation factor Tu C-terminal domain BLi00131 PF03144 Elongation factor Tu domain 2 BLi00132 PF00338 Ribosomal protein S10p/S20e BLi00133 PF00297 Ribosomal protein L3 BLi00134 PF00573 Ribosomal protein L4/L1 family BLi00135 PF00276 Ribosomal protein L23 BLi00136 PF00181 Ribosomal Proteins L2, RNA binding domain BLi00136 PF03947 Ribosomal Proteins L2, C-terminal domain BLi00137 PF00203 Ribosomal protein S19 BLi00138 PF00237 Ribosomal protein L22p/L17e BLi00139 PF00189 Ribosomal protein S3, C-terminal domain BLi00139 PF07650 KH domain BLi00140 PF00252 Ribosomal protein L16p/L10e BLi00141 PF00831 Ribosomal L29 protein BLi00142 PF00366 Ribosomal protein S17 BLi00143 PF00238 Ribosomal protein L14p/L23e BLi00144 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BLi00144 PF00467 KOW motif BLi00145 PF00673 ribosomal L5P family C-terminus BLi00145 PF00281 Ribosomal protein L5 BLi00146 PF00253 Ribosomal protein S14p/S29e BLi00147 PF00410 Ribosomal protein S8 BLi00148 PF00347 Ribosomal protein L6 BLi00149 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BLi00150 PF00333 Ribosomal protein S5, N-terminal domain BLi00150 PF03719 Ribosomal protein S5, C-terminal domain BLi00151 PF00327 Ribosomal protein L30p/L7e BLi00152 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BLi00153 PF00344 SecY translocase BLi00154 PF05191 Adenylate kinase, active site lid BLi00155 PF00557 Metallopeptidase family M24 BLi00157 PF01176 Translation initiation factor 1A / IF-1 BLi00158 PF00444 Ribosomal protein L36 BLi00159 PF00416 Ribosomal protein S13/S18 BLi00160 PF00411 Ribosomal protein S11 BLi00161 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BLi00161 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BLi00161 PF01000 RNA polymerase Rpb3/RpoA insert domain BLi00162 PF01196 Ribosomal protein L17 BLi00163 PF00005 ABC transporter BLi00164 PF00005 ABC transporter BLi00165 PF02361 Cobalt transport protein BLi00166 PF01416 tRNA pseudouridine synthase BLi00167 PF00572 Ribosomal protein L13 BLi00168 PF00380 Ribosomal protein S9/S16 BLi00169 PF05163 DinB family BLi00170 PF10730 Protein of unknown function (DUF2521) BLi00171 PF01520 N-acetylmuramoyl-L-alanine amidase BLi00172 PF10609 NUBPL iron-transfer P-loop NTPase BLi00173 PF17898 Spore germination GerD central core domain BLi00174 PF14089 KinB-signalling pathway activation in sporulation BLi00175 PF01522 Polysaccharide deacetylase BLi00181 PF00144 Beta-lactamase BLi00183 PF01758 Sodium Bile acid symporter family BLi00184 PF17369 Family of unknown function (DUF5391) BLi00185 PF02567 Phenazine biosynthesis-like protein BLi00186 PF07075 Protein of unknown function (DUF1343) BLi00187 PF00933 Glycosyl hydrolase family 3 N terminal domain BLi00187 PF01915 Glycosyl hydrolase family 3 C-terminal domain BLi00188 PF00144 Beta-lactamase BLi00189 PF00367 phosphotransferase system, EIIB BLi00189 PF02378 Phosphotransferase system, EIIC BLi00190 PF01380 SIS domain BLi00190 PF01418 Helix-turn-helix domain, rpiR family BLi00191 PF01380 SIS domain BLi00192 PF04463 Protein of unknown function (DUF523) BLi00198 PF00491 Arginase family BLi00199 PF08281 Sigma-70, region 4 BLi00199 PF04542 Sigma-70 region 2 BLi00200 PF13490 Putative zinc-finger BLi00201 PF02457 DisA bacterial checkpoint controller nucleotide-binding BLi00202 PF07949 YbbR-like protein BLi00203 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BLi00203 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BLi00203 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BLi00203 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BLi00204 PF01380 SIS domain BLi00207 PF00005 ABC transporter BLi00208 PF00392 Bacterial regulatory proteins, gntR family BLi00210 PF07690 Major Facilitator Superfamily BLi00213 PF00664 ABC transporter transmembrane region BLi00213 PF00005 ABC transporter BLi00214 PF01323 DSBA-like thioredoxin domain BLi00217 PF04439 Streptomycin adenylyltransferase BLi00219 PF13419 Haloacid dehalogenase-like hydrolase BLi00220 PF00324 Amino acid permease BLi00221 PF03600 Citrate transporter BLi00223 PF03401 Tripartite tricarboxylate transporter family receptor BLi00224 PF12431 Transcriptional regulator BLi00224 PF00072 Response regulator receiver domain BLi00224 PF08279 HTH domain BLi00225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00225 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BLi00226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi00226 PF03466 LysR substrate binding domain BLi00227 PF02142 MGS-like domain BLi00227 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BLi00227 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BLi00228 PF07690 Major Facilitator Superfamily BLi00229 PF17334 Minor curli fiber component A BLi00230 PF17340 Family of unknown function (DUF5370) BLi00234 PF03129 Anticodon binding domain BLi00234 PF02824 TGS domain BLi00234 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BLi00234 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BLi00237 PF05114 Protein of unknown function (DUF692) BLi00238 PF03471 Transporter associated domain BLi00238 PF00571 CBS domain BLi00238 PF01595 Cyclin M transmembrane N-terminal domain BLi00239 PF01595 Cyclin M transmembrane N-terminal domain BLi00239 PF03471 Transporter associated domain BLi00239 PF00571 CBS domain BLi00241 PF07690 Major Facilitator Superfamily BLi00245 PF02690 Na+/Pi-cotransporter BLi00246 PF05360 yiaA/B two helix domain BLi00251 PF00892 EamA-like transporter family BLi00258 PF00465 Iron-containing alcohol dehydrogenase BLi00259 PF00672 HAMP domain BLi00259 PF12729 Four helix bundle sensory module for signal transduction BLi00259 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi00260 PF13407 Periplasmic binding protein domain BLi00264 PF10710 Protein of unknown function (DUF2512) BLi00265 PF00324 Amino acid permease BLi00266 PF02574 Homocysteine S-methyltransferase BLi00267 PF04794 YdjC-like protein BLi00268 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BLi00268 PF00367 phosphotransferase system, EIIB BLi00268 PF02378 Phosphotransferase system, EIIC BLi00269 PF07739 TipAS antibiotic-recognition domain BLi00269 PF13411 MerR HTH family regulatory protein BLi00270 PF04239 Protein of unknown function (DUF421) BLi00271 PF00132 Bacterial transferase hexapeptide (six repeats) BLi00273 PF10990 Protein of unknown function (DUF2809) BLi00274 PF04960 Glutaminase BLi00275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00276 PF08664 YcbB domain BLi00276 PF00072 Response regulator receiver domain BLi00277 PF13302 Acetyltransferase (GNAT) domain BLi00278 PF05569 BlaR1 peptidase M56 BLi00278 PF00905 Penicillin binding protein transpeptidase domain BLi00279 PF03965 Penicillinase repressor BLi00281 PF16655 PhoD-like phosphatase, N-terminal domain BLi00281 PF09423 PhoD-like phosphatase BLi00282 PF02416 mttA/Hcf106 family BLi00283 PF00902 Sec-independent protein translocase protein (TatC) BLi00284 PF00701 Dihydrodipicolinate synthetase family BLi00285 PF00171 Aldehyde dehydrogenase family BLi00286 PF07690 Major Facilitator Superfamily BLi00287 PF13378 Enolase C-terminal domain-like BLi00288 PF00392 Bacterial regulatory proteins, gntR family BLi00288 PF07729 FCD domain BLi00289 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BLi00289 PF08666 SAF domain BLi00292 PF00512 His Kinase A (phospho-acceptor) domain BLi00292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00293 PF00005 ABC transporter BLi00296 PF13037 Domain of unknown function (DUF3898) BLi00296 PF13039 Protein of unknown function (DUF3900) BLi00297 PF16226 Domain of unknown function (DUF4885) BLi00298 PF01636 Phosphotransferase enzyme family BLi00299 PF01047 MarR family BLi00300 PF13193 AMP-binding enzyme C-terminal domain BLi00300 PF00501 AMP-binding enzyme BLi00304 PF07739 TipAS antibiotic-recognition domain BLi00304 PF13411 MerR HTH family regulatory protein BLi00306 PF13847 Methyltransferase domain BLi00306 PF03551 Transcriptional regulator PadR-like family BLi00308 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein BLi00309 PF00892 EamA-like transporter family BLi00310 PF06271 RDD family BLi00311 PF05225 helix-turn-helix, Psq domain BLi00311 PF02810 SEC-C motif BLi00312 PF00005 ABC transporter BLi00315 PF00486 Transcriptional regulatory protein, C terminal BLi00315 PF00072 Response regulator receiver domain BLi00316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00316 PF00512 His Kinase A (phospho-acceptor) domain BLi00317 PF03466 LysR substrate binding domain BLi00317 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi00318 PF14552 Tautomerase enzyme BLi00321 PF11611 Domain of unknown function (DUF4352) BLi00321 PF17118 Domain of unknown function (DUF5105) BLi00322 PF03606 C4-dicarboxylate anaerobic carrier BLi00323 PF01546 Peptidase family M20/M25/M40 BLi00323 PF07687 Peptidase dimerisation domain BLi00324 PF00583 Acetyltransferase (GNAT) family BLi00325 PF01425 Amidase BLi00326 PF08439 Oligopeptidase F BLi00326 PF01432 Peptidase family M3 BLi00327 PF04226 Transglycosylase associated protein BLi00329 PF13183 4Fe-4S dicluster domain BLi00329 PF02754 Cysteine-rich domain BLi00330 PF01565 FAD binding domain BLi00330 PF02913 FAD linked oxidases, C-terminal domain BLi00332 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi00333 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BLi00334 PF02378 Phosphotransferase system, EIIC BLi00335 PF02056 Family 4 glycosyl hydrolase BLi00335 PF11975 Family 4 glycosyl hydrolase C-terminal domain BLi00337 PF04794 YdjC-like protein BLi00338 PF00704 Glycosyl hydrolases family 18 BLi00338 PF00041 Fibronectin type III domain BLi00339 PF00704 Glycosyl hydrolases family 18 BLi00339 PF06483 Chitinase C BLi00340 PF00089 Trypsin BLi00343 PF16244 Domain of unknown function (DUF4901) BLi00344 PF00581 Rhodanese-like domain BLi00345 PF07486 Cell Wall Hydrolase BLi00346 PF00296 Luciferase-like monooxygenase BLi00347 PF00877 NlpC/P60 family BLi00349 PF00005 ABC transporter BLi00349 PF13732 Domain of unknown function (DUF4162) BLi00350 PF00440 Bacterial regulatory proteins, tetR family BLi00350 PF17932 Tetracyclin repressor-like, C-terminal domain BLi00354 PF02342 TerD domain BLi00355 PF02342 TerD domain BLi00356 PF02342 TerD domain BLi00357 PF03741 Integral membrane protein TerC family BLi00360 PF14266 Putative component of 'biosynthetic module' BLi00361 PF05816 Toxic anion resistance protein (TelA) BLi00362 PF02683 Cytochrome C biogenesis protein transmembrane region BLi00364 PF13411 MerR HTH family regulatory protein BLi00365 PF07690 Major Facilitator Superfamily BLi00366 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BLi00366 PF00056 lactate/malate dehydrogenase, NAD binding domain BLi00367 PF02652 L-lactate permease BLi00368 PF01810 LysE type translocator BLi00369 PF00324 Amino acid permease BLi00370 PF02540 NAD synthase BLi00371 PF01202 Shikimate kinase BLi00372 PF10127 RNA repair pathway DNA polymerase beta family BLi00373 PF01619 Proline dehydrogenase BLi00374 PF00171 Aldehyde dehydrogenase family BLi00375 PF00474 Sodium:solute symporter family BLi00376 PF17853 GGDEF-like domain BLi00376 PF13556 PucR C-terminal helix-turn-helix domain BLi00377 PF09323 Domain of unknown function (DUF1980) BLi00378 PF03773 Predicted permease BLi00379 PF05448 Acetyl xylan esterase (AXE1) BLi00383 PF00528 Binding-protein-dependent transport system inner membrane component BLi00384 PF00497 Bacterial extracellular solute-binding proteins, family 3 BLi00385 PF02525 Flavodoxin-like fold BLi00387 PF00232 Glycosyl hydrolase family 1 BLi00388 PF11033 Competence protein J (ComJ) BLi00389 PF14040 Deoxyribonuclease NucA/NucB BLi00391 PF00069 Protein kinase domain BLi00394 PF04740 LXG domain of WXG superfamily BLi00395 PF05378 Hydantoinase/oxoprolinase N-terminal region BLi00395 PF01968 Hydantoinase/oxoprolinase BLi00396 PF02538 Hydantoinase B/oxoprolinase BLi00398 PF00005 ABC transporter BLi00398 PF08402 TOBE domain BLi00399 PF00528 Binding-protein-dependent transport system inner membrane component BLi00400 PF00528 Binding-protein-dependent transport system inner membrane component BLi00401 PF00501 AMP-binding enzyme BLi00401 PF13193 AMP-binding enzyme C-terminal domain BLi00401 PF00550 Phosphopantetheine attachment site BLi00401 PF00668 Condensation domain BLi00402 PF00550 Phosphopantetheine attachment site BLi00402 PF00668 Condensation domain BLi00402 PF13193 AMP-binding enzyme C-terminal domain BLi00402 PF00501 AMP-binding enzyme BLi00403 PF00501 AMP-binding enzyme BLi00403 PF00975 Thioesterase domain BLi00403 PF00550 Phosphopantetheine attachment site BLi00403 PF13193 AMP-binding enzyme C-terminal domain BLi00403 PF00668 Condensation domain BLi00404 PF00975 Thioesterase domain BLi00405 PF00892 EamA-like transporter family BLi00406 PF00155 Aminotransferase class I and II BLi00406 PF00392 Bacterial regulatory proteins, gntR family BLi00407 PF01648 4'-phosphopantetheinyl transferase superfamily BLi00408 PF00756 Putative esterase BLi00409 PF12833 Helix-turn-helix domain BLi00409 PF06445 GyrI-like small molecule binding domain BLi00412 PF00005 ABC transporter BLi00417 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi00417 PF00672 HAMP domain BLi00418 PF00005 ABC transporter BLi00419 PF00528 Binding-protein-dependent transport system inner membrane component BLi00420 PF00497 Bacterial extracellular solute-binding proteins, family 3 BLi00421 PF02954 Bacterial regulatory protein, Fis family BLi00421 PF00158 Sigma-54 interaction domain BLi00421 PF13426 PAS domain BLi00422 PF00202 Aminotransferase class-III BLi00423 PF00324 Amino acid permease BLi00424 PF00491 Arginase family BLi00425 PF03466 LysR substrate binding domain BLi00425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi00426 PF02441 Flavoprotein BLi00427 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BLi00436 PF14449 Pre-toxin TG BLi00436 PF04740 LXG domain of WXG superfamily BLi00440 PF02743 Cache domain BLi00440 PF00672 HAMP domain BLi00440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00440 PF06580 Histidine kinase BLi00441 PF12833 Helix-turn-helix domain BLi00441 PF00072 Response regulator receiver domain BLi00442 PF13407 Periplasmic binding protein domain BLi00443 PF00005 ABC transporter BLi00444 PF02653 Branched-chain amino acid transport system / permease component BLi00445 PF07690 Major Facilitator Superfamily BLi00446 PF00583 Acetyltransferase (GNAT) family BLi00446 PF01047 MarR family BLi00447 PF02449 Beta-galactosidase BLi00447 PF08532 Beta-galactosidase trimerisation domain BLi00447 PF08533 Beta-galactosidase C-terminal domain BLi00448 PF02333 Phytase BLi00449 PF00854 POT family BLi00451 PF13229 Right handed beta helix region BLi00451 PF12708 Pectate lyase superfamily protein BLi00453 PF03323 Bacillus/Clostridium GerA spore germination protein BLi00454 PF05504 Spore germination B3/ GerAC like, C-terminal BLi00455 PF03845 Spore germination protein BLi00456 PF07739 TipAS antibiotic-recognition domain BLi00456 PF13411 MerR HTH family regulatory protein BLi00457 PF00005 ABC transporter BLi00458 PF02687 FtsX-like permease family BLi00458 PF12704 MacB-like periplasmic core domain BLi00459 PF00072 Response regulator receiver domain BLi00459 PF00486 Transcriptional regulatory protein, C terminal BLi00460 PF00512 His Kinase A (phospho-acceptor) domain BLi00460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00460 PF00672 HAMP domain BLi00461 PF02743 Cache domain BLi00461 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi00461 PF00672 HAMP domain BLi00462 PF13840 ACT domain BLi00462 PF00696 Amino acid kinase family BLi00463 PF01032 FecCD transport family BLi00464 PF01032 FecCD transport family BLi00465 PF00005 ABC transporter BLi00466 PF01497 Periplasmic binding protein BLi00467 PF07690 Major Facilitator Superfamily BLi00468 PF00440 Bacterial regulatory proteins, tetR family BLi00470 PF00881 Nitroreductase family BLi00471 PF03992 Antibiotic biosynthesis monooxygenase BLi00472 PF01022 Bacterial regulatory protein, arsR family BLi00473 PF00392 Bacterial regulatory proteins, gntR family BLi00473 PF00155 Aminotransferase class I and II BLi00474 PF00202 Aminotransferase class-III BLi00475 PF13520 Amino acid permease BLi00476 PF00171 Aldehyde dehydrogenase family BLi00477 PF00892 EamA-like transporter family BLi00479 PF07987 Domain of unkown function (DUF1775) BLi00480 PF13115 YtkA-like BLi00480 PF05425 Copper resistance protein D BLi00480 PF04234 CopC domain BLi00481 PF08220 DeoR-like helix-turn-helix domain BLi00481 PF05573 NosL BLi00482 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BLi00482 PF18267 Rubredoxin NAD+ reductase C-terminal domain BLi00482 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi00482 PF04324 BFD-like [2Fe-2S] binding domain BLi00483 PF00384 Molybdopterin oxidoreductase BLi00483 PF01568 Molydopterin dinucleotide binding domain BLi00483 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BLi00484 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi00484 PF18267 Rubredoxin NAD+ reductase C-terminal domain BLi00484 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BLi00484 PF04324 BFD-like [2Fe-2S] binding domain BLi00484 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BLi00485 PF00355 Rieske [2Fe-2S] domain BLi00486 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BLi00487 PF00392 Bacterial regulatory proteins, gntR family BLi00487 PF07729 FCD domain BLi00488 PF00939 Sodium:sulfate symporter transmembrane region BLi00489 PF07977 FabA-like domain BLi00490 PF07977 FabA-like domain BLi00491 PF01980 tRNA-methyltransferase O BLi00492 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi00495 PF00456 Transketolase, thiamine diphosphate binding domain BLi00496 PF02780 Transketolase, C-terminal domain BLi00496 PF02779 Transketolase, pyrimidine binding domain BLi00498 PF03746 LamB/YcsF family BLi00499 PF01566 Natural resistance-associated macrophage protein BLi00500 PF07286 Protein of unknown function (DUF1445) BLi00501 PF02682 Carboxyltransferase domain, subdomain C and D BLi00502 PF02626 Carboxyltransferase domain, subdomain A and B BLi00503 PF09339 IclR helix-turn-helix domain BLi00503 PF01614 Bacterial transcriptional regulator BLi00504 PF13472 GDSL-like Lipase/Acylhydrolase family BLi00505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi00505 PF02378 Phosphotransferase system, EIIC BLi00506 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi00507 PF08125 Mannitol dehydrogenase C-terminal domain BLi00507 PF01232 Mannitol dehydrogenase Rossmann domain BLi00508 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi00508 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi00508 PF00874 PRD domain BLi00508 PF05043 Mga helix-turn-helix domain BLi00508 PF08279 HTH domain BLi00512 PF16242 Pyridoxamine 5'-phosphate oxidase like BLi00513 PF10997 Alternate to MurJ BLi00514 PF03816 Cell envelope-related transcriptional attenuator domain BLi00515 PF12823 Domain of unknown function (DUF3817) BLi00517 PF01037 Lrp/AsnC ligand binding domain BLi00518 PF01751 Toprim domain BLi00518 PF01131 DNA topoisomerase BLi00519 PF13520 Amino acid permease BLi00520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BLi00520 PF00205 Thiamine pyrophosphate enzyme, central domain BLi00520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BLi00521 PF18416 N-acetylglucosamine binding protein domain 2 BLi00521 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BLi00522 PF00665 Integrase core domain BLi00522 PF13333 Integrase core domain BLi00522 PF13276 HTH-like domain BLi00525 PF13302 Acetyltransferase (GNAT) domain BLi00526 PF01566 Natural resistance-associated macrophage protein BLi00527 PF04226 Transglycosylase associated protein BLi00528 PF10415 Fumarase C C-terminus BLi00528 PF00206 Lyase BLi00529 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BLi00530 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) BLi00531 PF12787 EcsC protein family BLi00533 PF07883 Cupin domain BLi00534 PF00477 Small hydrophilic plant seed protein BLi00534 PF10685 Stress-induced bacterial acidophilic repeat motif BLi00535 PF01594 AI-2E family transporter BLi00536 PF00375 Sodium:dicarboxylate symporter family BLi00537 PF00005 ABC transporter BLi00540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BLi00540 PF02770 Acyl-CoA dehydrogenase, middle domain BLi00540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BLi00541 PF13040 Fur-regulated basic protein B BLi00542 PF00085 Thioredoxin BLi00543 PF07478 D-ala D-ala ligase C-terminus BLi00543 PF01820 D-ala D-ala ligase N-terminus BLi00544 PF02875 Mur ligase family, glutamate ligase domain BLi00544 PF08245 Mur ligase middle domain BLi00544 PF01225 Mur ligase family, catalytic domain BLi00545 PF12146 Serine aminopeptidase, S33 BLi00546 PF00271 Helicase conserved C-terminal domain BLi00546 PF00270 DEAD/DEAH box helicase BLi00547 PF03703 Bacterial PH domain BLi00548 PF03703 Bacterial PH domain BLi00549 PF01694 Rhomboid family BLi00551 PF00842 Alanine racemase, C-terminal domain BLi00551 PF01168 Alanine racemase, N-terminal domain BLi00552 PF01402 Ribbon-helix-helix protein, copG family BLi00553 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BLi00554 PF01740 STAS domain BLi00554 PF08678 Rsbr N terminal BLi00555 PF01740 STAS domain BLi00556 PF13581 Histidine kinase-like ATPase domain BLi00557 PF07228 Stage II sporulation protein E (SpoIIE) BLi00557 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain BLi00558 PF01740 STAS domain BLi00559 PF13581 Histidine kinase-like ATPase domain BLi00560 PF04542 Sigma-70 region 2 BLi00560 PF04545 Sigma-70, region 4 BLi00560 PF04539 Sigma-70 region 3 BLi00561 PF07228 Stage II sporulation protein E (SpoIIE) BLi00562 PF00575 S1 RNA binding domain BLi00562 PF09371 Tex-like protein N-terminal domain BLi00562 PF17674 HHH domain BLi00562 PF16921 Tex protein YqgF-like domain BLi00563 PF00440 Bacterial regulatory proteins, tetR family BLi00564 PF03176 MMPL family BLi00565 PF10263 SprT-like family BLi00573 PF00892 EamA-like transporter family BLi00575 PF01381 Helix-turn-helix BLi00576 PF00487 Fatty acid desaturase BLi00578 PF00313 'Cold-shock' DNA-binding domain BLi00579 PF00107 Zinc-binding dehydrogenase BLi00579 PF08240 Alcohol dehydrogenase GroES-like domain BLi00581 PF01047 MarR family BLi00582 PF00583 Acetyltransferase (GNAT) family BLi00583 PF04299 Putative FMN-binding domain BLi00585 PF01638 HxlR-like helix-turn-helix BLi00586 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BLi00586 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BLi00587 PF01810 LysE type translocator BLi00588 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi00588 PF03466 LysR substrate binding domain BLi00591 PF04199 Putative cyclase BLi00592 PF00324 Amino acid permease BLi00595 PF08281 Sigma-70, region 4 BLi00595 PF04542 Sigma-70 region 2 BLi00596 PF13739 Deacetylase PdaC BLi00596 PF11738 Protein of unknown function (DUF3298) BLi00597 PF01757 Acyltransferase family BLi00598 PF07690 Major Facilitator Superfamily BLi00599 PF06580 Histidine kinase BLi00599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00600 PF00072 Response regulator receiver domain BLi00600 PF04397 LytTr DNA-binding domain BLi00601 PF17961 Bacterial Ig domain BLi00601 PF00746 LPXTG cell wall anchor motif BLi00601 PF17210 SdrD B-like domain BLi00601 PF10425 C-terminus of bacterial fibrinogen-binding adhesin BLi00601 PF04650 YSIRK type signal peptide BLi00602 PF04203 Sortase domain BLi00603 PF00083 Sugar (and other) transporter BLi00611 PF02769 AIR synthase related protein, C-terminal domain BLi00611 PF00586 AIR synthase related protein, N-terminal domain BLi00612 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BLi00613 PF00814 Glycoprotease family BLi00614 PF00583 Acetyltransferase (GNAT) family BLi00615 PF00814 Glycoprotease family BLi00616 PF00005 ABC transporter BLi00616 PF12848 ABC transporter BLi00616 PF16326 ABC transporter C-terminal domain BLi00617 PF01967 MoaC family BLi00618 PF02629 CoA binding domain BLi00618 PF06971 Putative DNA-binding protein N-terminus BLi00619 PF02416 mttA/Hcf106 family BLi00620 PF00902 Sec-independent protein translocase protein (TatC) BLi00621 PF14146 Domain of unknown function (DUF4305) BLi00622 PF02517 CPBP intramembrane metalloprotease BLi00623 PF00166 Chaperonin 10 Kd subunit BLi00624 PF00118 TCP-1/cpn60 chaperonin family BLi00626 PF08863 YolD-like protein BLi00628 PF04294 VanW like protein BLi00629 PF10787 Uncharacterised protein from bacillus cereus group BLi00631 PF02586 SOS response associated peptidase (SRAP) BLi00633 PF00440 Bacterial regulatory proteins, tetR family BLi00633 PF17933 Tetracyclin repressor-like, C-terminal domain BLi00634 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BLi00634 PF00391 PEP-utilising enzyme, mobile domain BLi00636 PF04343 Protein of unknown function, DUF488 BLi00637 PF00106 short chain dehydrogenase BLi00638 PF00135 Carboxylesterase family BLi00639 PF07690 Major Facilitator Superfamily BLi00640 PF04012 PspA/IM30 family BLi00641 PF08271 TFIIB zinc-binding BLi00642 PF04536 TPM domain BLi00643 PF13421 SPFH domain-Band 7 family BLi00645 PF11495 Archaeal transcriptional regulator TrmB BLi00645 PF01978 Sugar-specific transcriptional regulator TrmB BLi00646 PF01810 LysE type translocator BLi00647 PF06803 Protein of unknown function (DUF1232) BLi00648 PF01098 Cell cycle protein BLi00649 PF01098 Cell cycle protein BLi00655 PF11738 Protein of unknown function (DUF3298) BLi00655 PF13739 Deacetylase PdaC BLi00655 PF01522 Polysaccharide deacetylase BLi00656 PF00128 Alpha amylase, catalytic domain BLi00656 PF09154 Domain of unknown function (DUF1939) BLi00657 PF00356 Bacterial regulatory proteins, lacI family BLi00658 PF00128 Alpha amylase, catalytic domain BLi00658 PF02903 Alpha amylase, N-terminal ig-like domain BLi00659 PF13416 Bacterial extracellular solute-binding protein BLi00660 PF00528 Binding-protein-dependent transport system inner membrane component BLi00661 PF00528 Binding-protein-dependent transport system inner membrane component BLi00662 PF06691 Protein of unknown function (DUF1189) BLi00663 PF03633 Glycosyl hydrolase family 65, C-terminal domain BLi00663 PF03636 Glycosyl hydrolase family 65, N-terminal domain BLi00663 PF03632 Glycosyl hydrolase family 65 central catalytic domain BLi00664 PF00128 Alpha amylase, catalytic domain BLi00664 PF16657 Maltogenic Amylase, C-terminal domain BLi00665 PF13419 Haloacid dehalogenase-like hydrolase BLi00666 PF00579 tRNA synthetases class I (W and Y) BLi00666 PF01479 S4 domain BLi00667 PF01047 MarR family BLi00670 PF03330 Lytic transglycolase BLi00671 PF07676 WD40-like Beta Propeller Repeat BLi00672 PF13170 Protein of unknown function (DUF4003) BLi00675 PF10502 Signal peptidase, peptidase S26 BLi00677 PF13460 NAD(P)H-binding BLi00678 PF12833 Helix-turn-helix domain BLi00679 PF07732 Multicopper oxidase BLi00679 PF07731 Multicopper oxidase BLi00679 PF00394 Multicopper oxidase BLi00682 PF01545 Cation efflux family BLi00682 PF16916 Dimerisation domain of Zinc Transporter BLi00683 PF17863 AAA lid domain BLi00683 PF07726 ATPase family associated with various cellular activities (AAA) BLi00684 PF01882 Protein of unknown function DUF58 BLi00685 PF11992 Domain of unknown function (DUF3488) BLi00685 PF13559 Domain of unknown function (DUF4129) BLi00685 PF01841 Transglutaminase-like superfamily BLi00686 PF00958 GMP synthase C terminal domain BLi00686 PF02540 NAD synthase BLi00686 PF00117 Glutamine amidotransferase class-I BLi00688 PF00860 Permease family BLi00690 PF13076 Fur-regulated basic protein A BLi00691 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BLi00692 PF14044 NETI protein BLi00693 PF00731 AIR carboxylase BLi00694 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BLi00694 PF02222 ATP-grasp domain BLi00695 PF00206 Lyase BLi00695 PF10397 Adenylosuccinate lyase C-terminus BLi00696 PF01259 SAICAR synthetase BLi00697 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BLi00699 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BLi00699 PF00586 AIR synthase related protein, N-terminal domain BLi00699 PF02769 AIR synthase related protein, C-terminal domain BLi00700 PF00156 Phosphoribosyl transferase domain BLi00701 PF00586 AIR synthase related protein, N-terminal domain BLi00701 PF02769 AIR synthase related protein, C-terminal domain BLi00702 PF00551 Formyl transferase BLi00703 PF01808 AICARFT/IMPCHase bienzyme BLi00703 PF02142 MGS-like domain BLi00704 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BLi00704 PF02843 Phosphoribosylglycinamide synthetase, C domain BLi00704 PF02844 Phosphoribosylglycinamide synthetase, N domain BLi00706 PF00067 Cytochrome P450 BLi00710 PF11127 Protein of unknown function (DUF2892) BLi00711 PF01979 Amidohydrolase family BLi00711 PF13382 Adenine deaminase C-terminal domain BLi00712 PF11258 Protein of unknown function (DUF3048) N-terminal domain BLi00712 PF17479 Protein of unknown function (DUF3048) C-terminal domain BLi00713 PF01371 Trp repressor protein BLi00714 PF01884 PcrB family BLi00715 PF13361 UvrD-like helicase C-terminal domain BLi00715 PF00580 UvrD/REP helicase N-terminal domain BLi00716 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BLi00716 PF03120 NAD-dependent DNA ligase OB-fold domain BLi00716 PF01653 NAD-dependent DNA ligase adenylation domain BLi00716 PF00533 BRCA1 C Terminus (BRCT) domain BLi00716 PF12826 Helix-hairpin-helix motif BLi00717 PF07537 CamS sex pheromone cAM373 precursor BLi00718 PF14502 Helix-turn-helix domain BLi00718 PF14503 YhfZ C-terminal domain BLi00720 PF10941 Protein of unknown function DUF2620 BLi00721 PF10797 Protein of unknown function BLi00722 PF02126 Phosphotriesterase family BLi00723 PF00155 Aminotransferase class I and II BLi00724 PF01676 Metalloenzyme superfamily BLi00725 PF01168 Alanine racemase, N-terminal domain BLi00726 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BLi00727 PF02308 MgtC family BLi00728 PF00474 Sodium:solute symporter family BLi00730 PF02686 Glu-tRNAGln amidotransferase C subunit BLi00731 PF01425 Amidase BLi00732 PF02934 GatB/GatE catalytic domain BLi00732 PF02637 GatB domain BLi00735 PF02156 Glycosyl hydrolase family 26 BLi00736 PF00440 Bacterial regulatory proteins, tetR family BLi00737 PF00873 AcrB/AcrD/AcrF family BLi00739 PF13302 Acetyltransferase (GNAT) domain BLi00740 PF01156 Inosine-uridine preferring nucleoside hydrolase BLi00741 PF00781 Diacylglycerol kinase catalytic domain BLi00742 PF01938 TRAM domain BLi00742 PF05958 tRNA (Uracil-5-)-methyltransferase BLi00744 PF02384 N-6 DNA Methylase BLi00744 PF12161 HsdM N-terminal domain BLi00746 PF12008 Type I restriction and modification enzyme - subunit R C terminal BLi00746 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BLi00746 PF18766 SWI2/SNF2 ATPase BLi00748 PF00367 phosphotransferase system, EIIB BLi00748 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BLi00748 PF02378 Phosphotransferase system, EIIC BLi00749 PF00232 Glycosyl hydrolase family 1 BLi00750 PF00874 PRD domain BLi00750 PF03123 CAT RNA binding domain BLi00751 PF18801 response regulator aspartate phosphatase H, N terminal BLi00754 PF01709 Transcriptional regulator BLi00755 PF01381 Helix-turn-helix BLi00757 PF00171 Aldehyde dehydrogenase family BLi00758 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi00759 PF00939 Sodium:sulfate symporter transmembrane region BLi00760 PF16326 ABC transporter C-terminal domain BLi00760 PF00005 ABC transporter BLi00760 PF12848 ABC transporter BLi00762 PF02649 Type I GTP cyclohydrolase folE2 BLi00765 PF07683 Cobalamin synthesis protein cobW C-terminal domain BLi00765 PF02492 CobW/HypB/UreG, nucleotide-binding domain BLi00766 PF03744 6-carboxyhexanoate--CoA ligase BLi00767 PF00202 Aminotransferase class-III BLi00768 PF00155 Aminotransferase class I and II BLi00770 PF06968 Biotin and Thiamin Synthesis associated domain BLi00770 PF04055 Radical SAM superfamily BLi00771 PF00067 Cytochrome P450 BLi00773 PF13411 MerR HTH family regulatory protein BLi00774 PF07690 Major Facilitator Superfamily BLi00775 PF00005 ABC transporter BLi00775 PF12848 ABC transporter BLi00776 PF00270 DEAD/DEAH box helicase BLi00776 PF00271 Helicase conserved C-terminal domain BLi00777 PF00107 Zinc-binding dehydrogenase BLi00777 PF16884 N-terminal domain of oxidoreductase BLi00778 PF11486 Protein of unknown function (DUF3212) BLi00779 PF11181 Heat induced stress protein YflT BLi00780 PF00939 Sodium:sulfate symporter transmembrane region BLi00783 PF00753 Metallo-beta-lactamase superfamily BLi00785 PF02898 Nitric oxide synthase, oxygenase domain BLi00786 PF13630 SdpI/YhfL protein family BLi00786 PF07853 Protein of unknown function (DUF1648) BLi00787 PF01022 Bacterial regulatory protein, arsR family BLi00788 PF00708 Acylphosphatase BLi00789 PF03473 MOSC domain BLi00789 PF03475 3-alpha domain BLi00790 PF11121 Protein of unknown function (DUF2639) BLi00792 PF00557 Metallopeptidase family M24 BLi00793 PF00884 Sulfatase BLi00794 PF09350 Domain of unknown function (DUF1992) BLi00795 PF01235 Sodium:alanine symporter family BLi00796 PF00367 phosphotransferase system, EIIB BLi00796 PF02378 Phosphotransferase system, EIIC BLi00797 PF16657 Maltogenic Amylase, C-terminal domain BLi00797 PF00128 Alpha amylase, catalytic domain BLi00798 PF07702 UTRA domain BLi00798 PF00392 Bacterial regulatory proteins, gntR family BLi00802 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BLi00803 PF00132 Bacterial transferase hexapeptide (six repeats) BLi00804 PF01370 NAD dependent epimerase/dehydratase family BLi00806 PF00535 Glycosyl transferase family 2 BLi00807 PF00535 Glycosyl transferase family 2 BLi00807 PF13181 Tetratricopeptide repeat BLi00808 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BLi00809 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BLi00809 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BLi00810 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BLi00810 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BLi00810 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BLi00812 PF01638 HxlR-like helix-turn-helix BLi00813 PF00881 Nitroreductase family BLi00814 PF00149 Calcineurin-like phosphoesterase BLi00814 PF02872 5'-nucleotidase, C-terminal domain BLi00815 PF01965 DJ-1/PfpI family BLi00816 PF06569 Protein of unknown function (DUF1128) BLi00817 PF01235 Sodium:alanine symporter family BLi00818 PF01451 Low molecular weight phosphotyrosine protein phosphatase BLi00820 PF03631 Virulence factor BrkB BLi00821 PF07690 Major Facilitator Superfamily BLi00823 PF01699 Sodium/calcium exchanger protein BLi00824 PF14167 YfkD-like protein BLi00825 PF08756 YfkB-like domain BLi00825 PF04055 Radical SAM superfamily BLi00827 PF01522 Polysaccharide deacetylase BLi00828 PF00465 Iron-containing alcohol dehydrogenase BLi00830 PF01544 CorA-like Mg2+ transporter protein BLi00831 PF00730 HhH-GPD superfamily base excision DNA repair protein BLi00832 PF05958 tRNA (Uracil-5-)-methyltransferase BLi00832 PF01938 TRAM domain BLi00839 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BLi00840 PF10925 Protein of unknown function (DUF2680) BLi00841 PF07690 Major Facilitator Superfamily BLi00842 PF02378 Phosphotransferase system, EIIC BLi00842 PF00367 phosphotransferase system, EIIB BLi00843 PF03123 CAT RNA binding domain BLi00843 PF00874 PRD domain BLi00845 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) BLi00846 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BLi00846 PF00361 Proton-conducting membrane transporter BLi00847 PF10057 Uncharacterized conserved protein (DUF2294) BLi00849 PF00676 Dehydrogenase E1 component BLi00850 PF02780 Transketolase, C-terminal domain BLi00850 PF02779 Transketolase, pyrimidine binding domain BLi00851 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BLi00851 PF00364 Biotin-requiring enzyme BLi00851 PF02817 e3 binding domain BLi00852 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BLi00852 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi00853 PF01590 GAF domain BLi00853 PF02954 Bacterial regulatory protein, Fis family BLi00853 PF00158 Sigma-54 interaction domain BLi00854 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BLi00855 PF11975 Family 4 glycosyl hydrolase C-terminal domain BLi00855 PF02056 Family 4 glycosyl hydrolase BLi00856 PF01418 Helix-turn-helix domain, rpiR family BLi00856 PF01380 SIS domain BLi00857 PF02378 Phosphotransferase system, EIIC BLi00857 PF00367 phosphotransferase system, EIIB BLi00860 PF01638 HxlR-like helix-turn-helix BLi00861 PF07681 DoxX BLi00862 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi00863 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BLi00863 PF04616 Glycosyl hydrolases family 43 BLi00864 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BLi00864 PF04616 Glycosyl hydrolases family 43 BLi00865 PF02311 AraC-like ligand binding domain BLi00865 PF12833 Helix-turn-helix domain BLi00866 PF13416 Bacterial extracellular solute-binding protein BLi00867 PF02525 Flavodoxin-like fold BLi00868 PF00293 NUDIX domain BLi00871 PF09924 Uncharacterised conserved protein (DUF2156) BLi00871 PF03706 Lysylphosphatidylglycerol synthase TM region BLi00872 PF02567 Phenazine biosynthesis-like protein BLi00873 PF00881 Nitroreductase family BLi00874 PF14151 YfhD-like protein BLi00876 PF01370 NAD dependent epimerase/dehydratase family BLi00876 PF08338 Domain of unknown function (DUF1731) BLi00877 PF02631 RecX family BLi00878 PF08838 Protein of unknown function (DUF1811) BLi00879 PF08176 Small acid-soluble spore protein K family BLi00880 PF14043 WVELL protein BLi00881 PF00535 Glycosyl transferase family 2 BLi00883 PF09586 Bacterial membrane protein YfhO BLi00884 PF04307 LexA-binding, inner membrane-associated putative hydrolase BLi00885 PF00730 HhH-GPD superfamily base excision DNA repair protein BLi00885 PF14815 NUDIX domain BLi00889 PF14182 YgaB-like protein BLi00890 PF04167 Protein of unknown function (DUF402) BLi00891 PF00664 ABC transporter transmembrane region BLi00891 PF00005 ABC transporter BLi00892 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi00892 PF00005 ABC transporter BLi00893 PF00005 ABC transporter BLi00893 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi00894 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BLi00897 PF06081 Aromatic acid exporter family member 1 BLi00898 PF00202 Aminotransferase class-III BLi00899 PF00578 AhpC/TSA family BLi00900 PF01475 Ferric uptake regulator family BLi00901 PF11023 Zinc-ribbon containing domain BLi00902 PF14540 Nucleotidyltransferase-like BLi00902 PF18576 Helix-turn-helix domain BLi00922 PF18801 response regulator aspartate phosphatase H, N terminal BLi00930 PF01471 Putative peptidoglycan binding domain BLi00930 PF01510 N-acetylmuramoyl-L-alanine amidase BLi00933 PF14449 Pre-toxin TG BLi00933 PF04740 LXG domain of WXG superfamily BLi00935 PF04740 LXG domain of WXG superfamily BLi00935 PF14449 Pre-toxin TG BLi00936 PF13181 Tetratricopeptide repeat BLi00936 PF18801 response regulator aspartate phosphatase H, N terminal BLi00937 PF03129 Anticodon binding domain BLi00937 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BLi00937 PF02824 TGS domain BLi00937 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BLi00939 PF01487 Type I 3-dehydroquinase BLi00940 PF13667 ThiC-associated domain BLi00940 PF01964 Radical SAM ThiC family BLi00941 PF00005 ABC transporter BLi00942 PF09084 NMT1/THI5 like BLi00943 PF00528 Binding-protein-dependent transport system inner membrane component BLi00944 PF00296 Luciferase-like monooxygenase BLi00946 PF01381 Helix-turn-helix BLi00948 PF00005 ABC transporter BLi00948 PF13732 Domain of unknown function (DUF4162) BLi00952 PF00253 Ribosomal protein S14p/S29e BLi00955 PF08331 Domain of unknown function (DUF1730) BLi00956 PF12671 Putative amidase domain BLi00957 PF00588 SpoU rRNA Methylase family BLi00958 PF13171 Protein of unknown function (DUF4004) BLi00959 PF04519 Polymer-forming cytoskeletal BLi00962 PF08298 PrkA AAA domain BLi00962 PF06798 PrkA serine protein kinase C-terminal domain BLi00963 PF04285 Protein of unknown function (DUF444) BLi00965 PF07690 Major Facilitator Superfamily BLi00966 PF03358 NADPH-dependent FMN reductase BLi00969 PF00005 ABC transporter BLi00970 PF12679 ABC-2 family transporter protein BLi00971 PF00313 'Cold-shock' DNA-binding domain BLi00972 PF09383 NIL domain BLi00972 PF00005 ABC transporter BLi00973 PF00528 Binding-protein-dependent transport system inner membrane component BLi00974 PF03180 NLPA lipoprotein BLi00975 PF00375 Sodium:dicarboxylate symporter family BLi00977 PF00326 Prolyl oligopeptidase family BLi00978 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BLi00980 PF07875 Coat F domain BLi00981 PF00989 PAS fold BLi00981 PF00512 His Kinase A (phospho-acceptor) domain BLi00981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi00981 PF13426 PAS domain BLi00981 PF13188 PAS domain BLi00982 PF00565 Staphylococcal nuclease homologue BLi00982 PF02872 5'-nucleotidase, C-terminal domain BLi00982 PF00149 Calcineurin-like phosphoesterase BLi00982 PF00746 LPXTG cell wall anchor motif BLi00983 PF04203 Sortase domain BLi00984 PF01479 S4 domain BLi00984 PF00849 RNA pseudouridylate synthase BLi00985 PF17326 Family of unknown function (DUF5365) BLi00986 PF00571 CBS domain BLi00987 PF13419 Haloacid dehalogenase-like hydrolase BLi00988 PF00795 Carbon-nitrogen hydrolase BLi00988 PF00583 Acetyltransferase (GNAT) family BLi00989 PF00005 ABC transporter BLi00989 PF16326 ABC transporter C-terminal domain BLi00989 PF12848 ABC transporter BLi00990 PF01226 Formate/nitrite transporter BLi00991 PF03547 Membrane transport protein BLi00992 PF08240 Alcohol dehydrogenase GroES-like domain BLi00992 PF00107 Zinc-binding dehydrogenase BLi00993 PF04309 Glycerol-3-phosphate responsive antiterminator BLi00994 PF00230 Major intrinsic protein BLi00995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BLi00995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BLi00996 PF01266 FAD dependent oxidoreductase BLi00996 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BLi00997 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BLi00997 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BLi00997 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BLi00997 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BLi01000 PF13185 GAF domain BLi01000 PF07730 Histidine kinase BLi01001 PF00196 Bacterial regulatory proteins, luxR family BLi01001 PF00072 Response regulator receiver domain BLi01002 PF03358 NADPH-dependent FMN reductase BLi01003 PF14148 YhdB-like protein BLi01004 PF13028 Protein of unknown function (DUF3889) BLi01005 PF02082 Transcriptional regulator BLi01006 PF00042 Globin BLi01006 PF00970 Oxidoreductase FAD-binding domain BLi01006 PF00175 Oxidoreductase NAD-binding domain BLi01007 PF04293 SpoVR like protein BLi01008 PF00877 NlpC/P60 family BLi01008 PF01476 LysM domain BLi01009 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi01009 PF03466 LysR substrate binding domain BLi01010 PF00285 Citrate synthase, C-terminal domain BLi01011 PF07995 Glucose / Sorbosone dehydrogenase BLi01013 PF00209 Sodium:neurotransmitter symporter family BLi01015 PF06445 GyrI-like small molecule binding domain BLi01015 PF12833 Helix-turn-helix domain BLi01016 PF00155 Aminotransferase class I and II BLi01016 PF00392 Bacterial regulatory proteins, gntR family BLi01018 PF17453 Sigma-M inhibitor BLi01019 PF13800 Sigma factor regulator N-terminal BLi01019 PF13791 Sigma factor regulator C-terminal BLi01020 PF04542 Sigma-70 region 2 BLi01020 PF08281 Sigma-70, region 4 BLi01021 PF07883 Cupin domain BLi01022 PF01553 Acyltransferase BLi01023 PF05656 Protein of unknown function (DUF805) BLi01025 PF00440 Bacterial regulatory proteins, tetR family BLi01025 PF18665 Tetracyclin repressor-like, C-terminal domain BLi01026 PF00571 CBS domain BLi01026 PF01595 Cyclin M transmembrane N-terminal domain BLi01026 PF03471 Transporter associated domain BLi01027 PF13411 MerR HTH family regulatory protein BLi01028 PF00571 CBS domain BLi01028 PF01595 Cyclin M transmembrane N-terminal domain BLi01028 PF03471 Transporter associated domain BLi01031 PF05036 Sporulation related domain BLi01031 PF01520 N-acetylmuramoyl-L-alanine amidase BLi01032 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BLi01033 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BLi01034 PF03009 Glycerophosphoryl diester phosphodiesterase family BLi01035 PF17444 Uncharacterized YhdX-like BLi01036 PF00924 Mechanosensitive ion channel BLi01037 PF02146 Sir2 family BLi01039 PF01522 Polysaccharide deacetylase BLi01040 PF01063 Amino-transferase class IV BLi01041 PF03553 Na+/H+ antiporter family BLi01042 PF01263 Aldose 1-epimerase BLi01043 PF16302 Domain of unknown function (DUF4944) BLi01046 PF00582 Universal stress protein family BLi01047 PF00664 ABC transporter transmembrane region BLi01047 PF00005 ABC transporter BLi01048 PF00664 ABC transporter transmembrane region BLi01048 PF00005 ABC transporter BLi01049 PF13460 NAD(P)H-binding BLi01050 PF00269 Small, acid-soluble spore proteins, alpha/beta type BLi01052 PF03459 TOBE domain BLi01052 PF00005 ABC transporter BLi01052 PF17912 MalK OB fold domain BLi01053 PF13556 PucR C-terminal helix-turn-helix domain BLi01054 PF17277 Family of unknown function (DUF5342) BLi01055 PF14398 YheC/D like ATP-grasp BLi01056 PF14398 YheC/D like ATP-grasp BLi01057 PF04286 Protein of unknown function (DUF445) BLi01058 PF06133 Control of competence regulator ComK, YlbF/YmcA BLi01061 PF04055 Radical SAM superfamily BLi01062 PF00378 Enoyl-CoA hydratase/isomerase BLi01063 PF18801 response regulator aspartate phosphatase H, N terminal BLi01065 PF14120 YhzD-like protein BLi01066 PF00005 ABC transporter BLi01066 PF13732 Domain of unknown function (DUF4162) BLi01068 PF00149 Calcineurin-like phosphoesterase BLi01069 PF13514 AAA domain BLi01070 PF01966 HD domain BLi01071 PF14147 Sporulation protein YhaL BLi01076 PF11667 Putative zincin peptidase BLi01077 PF08963 Protein of unknown function (DUF1878) BLi01078 PF01047 MarR family BLi01079 PF12732 YtxH-like protein BLi01081 PF17099 Tryptophan transporter TrpP BLi01082 PF00266 Aminotransferase class-V BLi01083 PF01230 HIT domain BLi01085 PF00005 ABC transporter BLi01086 PF05975 Bacterial ABC transporter protein EcsB BLi01087 PF12787 EcsC protein family BLi01088 PF07687 Peptidase dimerisation domain BLi01088 PF01546 Peptidase family M20/M25/M40 BLi01090 PF03992 Antibiotic biosynthesis monooxygenase BLi01091 PF00912 Transglycosylase BLi01091 PF00905 Penicillin binding protein transpeptidase domain BLi01092 PF01208 Uroporphyrinogen decarboxylase (URO-D) BLi01095 PF17932 Tetracyclin repressor-like, C-terminal domain BLi01095 PF00440 Bacterial regulatory proteins, tetR family BLi01097 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BLi01097 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BLi01098 PF05343 M42 glutamyl aminopeptidase BLi01100 PF00375 Sodium:dicarboxylate symporter family BLi01101 PF12706 Beta-lactamase superfamily domain BLi01102 PF03099 Biotin/lipoate A/B protein ligase family BLi01102 PF10437 Bacterial lipoate protein ligase C-terminus BLi01103 PF00501 AMP-binding enzyme BLi01103 PF13193 AMP-binding enzyme C-terminal domain BLi01105 PF01381 Helix-turn-helix BLi01105 PF07883 Cupin domain BLi01108 PF01435 Peptidase family M48 BLi01108 PF16491 CAAX prenyl protease N-terminal, five membrane helices BLi01110 PF00892 EamA-like transporter family BLi01111 PF01497 Periplasmic binding protein BLi01112 PF01032 FecCD transport family BLi01113 PF01032 FecCD transport family BLi01114 PF00300 Histidine phosphatase superfamily (branch 1) BLi01115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi01116 PF01266 FAD dependent oxidoreductase BLi01116 PF00355 Rieske [2Fe-2S] domain BLi01118 PF08858 IDEAL domain BLi01119 PF06338 ComK protein BLi01121 PF09335 SNARE associated Golgi protein BLi01122 PF10502 Signal peptidase, peptidase S26 BLi01123 PF00082 Subtilase family BLi01125 PF13556 PucR C-terminal helix-turn-helix domain BLi01125 PF17853 GGDEF-like domain BLi01125 PF07905 Purine catabolism regulatory protein-like family BLi01126 PF01979 Amidohydrolase family BLi01127 PF01546 Peptidase family M20/M25/M40 BLi01128 PF07883 Cupin domain BLi01128 PF05899 Protein of unknown function (DUF861) BLi01129 PF02615 Malate/L-lactate dehydrogenase BLi01130 PF02615 Malate/L-lactate dehydrogenase BLi01131 PF02629 CoA binding domain BLi01131 PF00549 CoA-ligase BLi01132 PF06545 Protein of unknown function (DUF1116) BLi01134 PF00696 Amino acid kinase family BLi01135 PF07690 Major Facilitator Superfamily BLi01136 PF10901 Protein of unknown function (DUF2690) BLi01137 PF18801 response regulator aspartate phosphatase H, N terminal BLi01143 PF11975 Family 4 glycosyl hydrolase C-terminal domain BLi01143 PF02056 Family 4 glycosyl hydrolase BLi01144 PF05145 Transition state regulatory protein AbrB BLi01145 PF11007 Spore coat associated protein JA (CotJA) BLi01146 PF12652 CotJB protein BLi01147 PF05067 Manganese containing catalase BLi01148 PF00501 AMP-binding enzyme BLi01148 PF13193 AMP-binding enzyme C-terminal domain BLi01149 PF07690 Major Facilitator Superfamily BLi01151 PF16736 Single Cache-like BLi01151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01151 PF00989 PAS fold BLi01151 PF00512 His Kinase A (phospho-acceptor) domain BLi01152 PF00072 Response regulator receiver domain BLi01152 PF00486 Transcriptional regulatory protein, C terminal BLi01153 PF02915 Rubrerythrin BLi01155 PF00528 Binding-protein-dependent transport system inner membrane component BLi01156 PF12705 PD-(D/E)XK nuclease superfamily BLi01157 PF12705 PD-(D/E)XK nuclease superfamily BLi01157 PF00580 UvrD/REP helicase N-terminal domain BLi01157 PF13361 UvrD-like helicase C-terminal domain BLi01158 PF00149 Calcineurin-like phosphoesterase BLi01158 PF12320 Type 5 capsule protein repressor C-terminal domain BLi01159 PF13476 AAA domain BLi01160 PF10676 Spore germination protein gerPA/gerPF BLi01161 PF10970 Spore germination protein GerPE BLi01163 PF10737 Spore germination protein GerPC BLi01164 PF10803 Spore germination GerPB BLi01165 PF10676 Spore germination protein gerPA/gerPF BLi01166 PF12650 Domain of unknown function (DUF3784) BLi01167 PF09388 Spo0E like sporulation regulatory protein BLi01168 PF08757 CotH kinase protein BLi01170 PF01557 Fumarylacetoacetate (FAA) hydrolase family BLi01171 PF03193 RsgA GTPase BLi01172 PF07457 Protein of unknown function (DUF1516) BLi01173 PF10949 Protein of unknown function (DUF2777) BLi01174 PF13537 Glutamine amidotransferase domain BLi01174 PF00733 Asparagine synthase BLi01175 PF00909 Ammonium Transporter Family BLi01176 PF00543 Nitrogen regulatory protein P-II BLi01177 PF01554 MatE BLi01178 PF12833 Helix-turn-helix domain BLi01178 PF02311 AraC-like ligand binding domain BLi01180 PF00356 Bacterial regulatory proteins, lacI family BLi01181 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BLi01181 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BLi01182 PF00392 Bacterial regulatory proteins, gntR family BLi01182 PF00155 Aminotransferase class I and II BLi01183 PF00202 Aminotransferase class-III BLi01184 PF00282 Pyridoxal-dependent decarboxylase conserved domain BLi01185 PF06276 Ferric iron reductase FhuF-like transporter BLi01185 PF04183 IucA / IucC family BLi01187 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BLi01188 PF06276 Ferric iron reductase FhuF-like transporter BLi01188 PF04183 IucA / IucC family BLi01189 PF13673 Acetyltransferase (GNAT) domain BLi01191 PF13280 WYL domain BLi01191 PF08279 HTH domain BLi01192 PF02310 B12 binding domain BLi01192 PF02574 Homocysteine S-methyltransferase BLi01192 PF02965 Vitamin B12 dependent methionine synthase, activation domain BLi01192 PF00809 Pterin binding enzyme BLi01192 PF02607 B12 binding domain BLi01193 PF02574 Homocysteine S-methyltransferase BLi01193 PF02219 Methylenetetrahydrofolate reductase BLi01194 PF04461 Protein of unknown function (DUF520) BLi01195 PF17783 CvfB-like winged helix domain BLi01195 PF13509 S1 domain BLi01197 PF02645 Uncharacterised protein, DegV family COG1307 BLi01198 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BLi01198 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BLi01199 PF12690 Intracellular proteinase inhibitor BLi01200 PF00478 IMP dehydrogenase / GMP reductase domain BLi01201 PF12758 Protein of unknown function (DUF3813) BLi01204 PF00326 Prolyl oligopeptidase family BLi01205 PF01883 Iron-sulfur cluster assembly protein BLi01206 PF01118 Semialdehyde dehydrogenase, NAD binding domain BLi01206 PF02774 Semialdehyde dehydrogenase, dimerisation domain BLi01207 PF01960 ArgJ family BLi01208 PF00696 Amino acid kinase family BLi01209 PF00202 Aminotransferase class-III BLi01210 PF00117 Glutamine amidotransferase class-I BLi01210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BLi01211 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BLi01211 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BLi01212 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BLi01212 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BLi01213 PF02673 Bacitracin resistance protein BacA BLi01214 PF14168 YjzC-like protein BLi01218 PF02608 ABC transporter substrate-binding protein PnrA-like BLi01219 PF10815 ComZ BLi01221 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BLi01221 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BLi01222 PF02801 Beta-ketoacyl synthase, C-terminal domain BLi01222 PF00109 Beta-ketoacyl synthase, N-terminal domain BLi01223 PF10026 Predicted Zn-dependent protease (DUF2268) BLi01224 PF00005 ABC transporter BLi01224 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi01225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi01225 PF00005 ABC transporter BLi01226 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BLi01227 PF00528 Binding-protein-dependent transport system inner membrane component BLi01228 PF00528 Binding-protein-dependent transport system inner membrane component BLi01228 PF12911 N-terminal TM domain of oligopeptide transport permease C BLi01230 PF12227 Protein of unknown function (DUF3603) BLi01231 PF00579 tRNA synthetases class I (W and Y) BLi01232 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BLi01233 PF00528 Binding-protein-dependent transport system inner membrane component BLi01234 PF12911 N-terminal TM domain of oligopeptide transport permease C BLi01234 PF00528 Binding-protein-dependent transport system inner membrane component BLi01235 PF00005 ABC transporter BLi01235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi01236 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi01236 PF00005 ABC transporter BLi01237 PF13508 Acetyltransferase (GNAT) domain BLi01238 PF03960 ArsC family BLi01240 PF05389 Negative regulator of genetic competence (MecA) BLi01243 PF01970 Tripartite tricarboxylate transporter TctA family BLi01244 PF12431 Transcriptional regulator BLi01244 PF00072 Response regulator receiver domain BLi01245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BLi01245 PF00989 PAS fold BLi01245 PF17203 Single cache domain 3 BLi01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01246 PF06054 Competence protein CoiA-like family BLi01247 PF01432 Peptidase family M3 BLi01247 PF08439 Oligopeptidase F BLi01250 PF01152 Bacterial-like globin BLi01251 PF01464 Transglycosylase SLT domain BLi01252 PF01928 CYTH domain BLi01254 PF04607 Region found in RelA / SpoT proteins BLi01255 PF01513 ATP-NAD kinase BLi01256 PF00849 RNA pseudouridylate synthase BLi01257 PF00149 Calcineurin-like phosphoesterase BLi01258 PF02254 TrkA-N domain BLi01258 PF02080 TrkA-C domain BLi01258 PF00999 Sodium/hydrogen exchanger family BLi01259 PF03070 TENA/THI-4/PQQC family BLi01260 PF02581 Thiamine monophosphate synthase BLi01261 PF01266 FAD dependent oxidoreductase BLi01262 PF02597 ThiS family BLi01263 PF05690 Thiazole biosynthesis protein ThiG BLi01264 PF00899 ThiF family BLi01265 PF08543 Phosphomethylpyrimidine kinase BLi01267 PF14153 Spore coat protein CotO BLi01268 PF10612 Spore coat protein Z BLi01269 PF10612 Spore coat protein Z BLi01270 PF07552 Spore Coat Protein X and V domain BLi01272 PF07552 Spore Coat Protein X and V domain BLi01276 PF14069 Stage VI sporulation protein F BLi01277 PF00580 UvrD/REP helicase N-terminal domain BLi01277 PF13361 UvrD-like helicase C-terminal domain BLi01279 PF09335 SNARE associated Golgi protein BLi01280 PF16363 GDP-mannose 4,6 dehydratase BLi01281 PF00483 Nucleotidyl transferase BLi01282 PF04138 GtrA-like protein BLi01283 PF13673 Acetyltransferase (GNAT) domain BLi01285 PF00756 Putative esterase BLi01289 PF01053 Cys/Met metabolism PLP-dependent enzyme BLi01290 PF01053 Cys/Met metabolism PLP-dependent enzyme BLi01291 PF05684 Protein of unknown function (DUF819) BLi01294 PF11954 Domain of unknown function (DUF3471) BLi01294 PF00144 Beta-lactamase BLi01295 PF04616 Glycosyl hydrolases family 43 BLi01298 PF12464 Maltose acetyltransferase BLi01298 PF14602 Hexapeptide repeat of succinyl-transferase BLi01300 PF03466 LysR substrate binding domain BLi01300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi01302 PF00667 FAD binding domain BLi01302 PF00175 Oxidoreductase NAD-binding domain BLi01302 PF00258 Flavodoxin BLi01303 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BLi01303 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BLi01306 PF00892 EamA-like transporter family BLi01307 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi01308 PF16800 IseA DL-endopeptidase inhibitor BLi01309 PF06725 3D domain BLi01309 PF01476 LysM domain BLi01310 PF07690 Major Facilitator Superfamily BLi01311 PF00440 Bacterial regulatory proteins, tetR family BLi01314 PF04634 Protein of unknown function, DUF600 BLi01315 PF04740 LXG domain of WXG superfamily BLi01316 PF05908 Poly-gamma-glutamate hydrolase BLi01317 PF06114 IrrE N-terminal-like domain BLi01318 PF01381 Helix-turn-helix BLi01322 PF01695 IstB-like ATP binding protein BLi01325 PF17356 Phage-like element PBSX protein XtrA BLi01326 PF08281 Sigma-70, region 4 BLi01327 PF10668 Phage terminase small subunit BLi01327 PF03592 Terminase small subunit BLi01328 PF04466 Phage terminase large subunit BLi01328 PF17288 Terminase RNAseH like domain BLi01329 PF04860 Phage portal protein BLi01330 PF14550 Putative phage serine protease XkdF BLi01331 PF05065 Phage capsid family BLi01332 PF11436 Protein of unknown function (DUF3199) BLi01333 PF12206 Domain of unknown function (DUF3599) BLi01334 PF04883 Bacteriophage HK97-gp10, putative tail-component BLi01337 PF04984 Phage tail sheath protein subtilisin-like domain BLi01337 PF17482 Phage tail sheath C-terminal domain BLi01337 PF17481 Phage tail sheath protein beta-sandwich domain BLi01338 PF09393 Phage tail tube protein BLi01339 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC BLi01341 PF01464 Transglycosylase SLT domain BLi01342 PF01476 LysM domain BLi01344 PF10844 Protein of unknown function (DUF2577) BLi01345 PF10934 Protein of unknown function (DUF2634) BLi01346 PF04865 Baseplate J-like protein BLi01347 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) BLi01351 PF10779 Haemolysin XhlA BLi01352 PF04688 SPP1 phage holin BLi01353 PF01471 Putative peptidoglycan binding domain BLi01353 PF01510 N-acetylmuramoyl-L-alanine amidase BLi01354 PF07729 FCD domain BLi01354 PF00392 Bacterial regulatory proteins, gntR family BLi01355 PF08240 Alcohol dehydrogenase GroES-like domain BLi01355 PF00107 Zinc-binding dehydrogenase BLi01356 PF03786 D-mannonate dehydratase (UxuA) BLi01357 PF00106 short chain dehydrogenase BLi01358 PF00107 Zinc-binding dehydrogenase BLi01358 PF08240 Alcohol dehydrogenase GroES-like domain BLi01359 PF07690 Major Facilitator Superfamily BLi01360 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system BLi01361 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BLi01362 PF01384 Phosphate transporter family BLi01363 PF01865 Protein of unknown function DUF47 BLi01365 PF04854 Protein of unknown function, DUF624 BLi01366 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01366 PF02743 Cache domain BLi01366 PF06580 Histidine kinase BLi01366 PF00672 HAMP domain BLi01367 PF12833 Helix-turn-helix domain BLi01367 PF00072 Response regulator receiver domain BLi01368 PF13416 Bacterial extracellular solute-binding protein BLi01369 PF00528 Binding-protein-dependent transport system inner membrane component BLi01370 PF00528 Binding-protein-dependent transport system inner membrane component BLi01371 PF07470 Glycosyl Hydrolase Family 88 BLi01372 PF12833 Helix-turn-helix domain BLi01373 PF13472 GDSL-like Lipase/Acylhydrolase family BLi01374 PF09224 Domain of unknown function (DUF1961) BLi01375 PF04854 Protein of unknown function, DUF624 BLi01376 PF18370 Rhamnogalacturonan I lyases beta-sheet domain BLi01378 PF13472 GDSL-like Lipase/Acylhydrolase family BLi01379 PF18370 Rhamnogalacturonan I lyases beta-sheet domain BLi01379 PF01839 FG-GAP repeat BLi01380 PF00248 Aldo/keto reductase family BLi01381 PF00657 GDSL-like Lipase/Acylhydrolase BLi01382 PF02449 Beta-galactosidase BLi01382 PF08532 Beta-galactosidase trimerisation domain BLi01382 PF08533 Beta-galactosidase C-terminal domain BLi01384 PF01547 Bacterial extracellular solute-binding protein BLi01385 PF00528 Binding-protein-dependent transport system inner membrane component BLi01386 PF00528 Binding-protein-dependent transport system inner membrane component BLi01387 PF13520 Amino acid permease BLi01388 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi01390 PF13180 PDZ domain BLi01391 PF03807 NADP oxidoreductase coenzyme F420-dependent BLi01391 PF14748 Pyrroline-5-carboxylate reductase dimerisation BLi01392 PF04951 D-aminopeptidase BLi01393 PF00528 Binding-protein-dependent transport system inner membrane component BLi01394 PF12911 N-terminal TM domain of oligopeptide transport permease C BLi01394 PF00528 Binding-protein-dependent transport system inner membrane component BLi01395 PF00005 ABC transporter BLi01395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi01396 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BLi01397 PF17676 LD-carboxypeptidase C-terminal domain BLi01397 PF02016 LD-carboxypeptidase N-terminal domain BLi01398 PF13378 Enolase C-terminal domain-like BLi01398 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BLi01399 PF00877 NlpC/P60 family BLi01400 PF00005 ABC transporter BLi01400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi01402 PF03061 Thioesterase superfamily BLi01403 PF04239 Protein of unknown function (DUF421) BLi01404 PF00544 Pectate lyase BLi01408 PF12867 DinB superfamily BLi01409 PF00893 Small Multidrug Resistance protein BLi01410 PF00893 Small Multidrug Resistance protein BLi01411 PF01842 ACT domain BLi01411 PF00551 Formyl transferase BLi01412 PF00696 Amino acid kinase family BLi01412 PF01472 PUA domain BLi01413 PF00171 Aldehyde dehydrogenase family BLi01414 PF02566 OsmC-like protein BLi01415 PF01047 MarR family BLi01416 PF02566 OsmC-like protein BLi01418 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BLi01419 PF00300 Histidine phosphatase superfamily (branch 1) BLi01422 PF01717 Cobalamin-independent synthase, Catalytic domain BLi01422 PF08267 Cobalamin-independent synthase, N-terminal domain BLi01423 PF00082 Subtilase family BLi01424 PF11132 Transcriptional regulator protein (SplA) BLi01426 PF01769 Divalent cation transporter BLi01426 PF03448 MgtE intracellular N domain BLi01426 PF00571 CBS domain BLi01428 PF00589 Phage integrase family BLi01428 PF14659 Phage integrase, N-terminal SAM-like domain BLi01429 PF06114 IrrE N-terminal-like domain BLi01433 PF01381 Helix-turn-helix BLi01438 PF17448 Uncharacterized YqaH-like BLi01440 PF09588 YqaJ-like viral recombinase domain BLi01441 PF03837 RecT family BLi01442 PF07261 Replication initiation and membrane attachment BLi01443 PF01695 IstB-like ATP binding protein BLi01444 PF17356 Phage-like element PBSX protein XtrA BLi01452 PF05866 Endodeoxyribonuclease RusA BLi01453 PF00436 Single-strand binding protein family BLi01463 PF10668 Phage terminase small subunit BLi01464 PF04466 Phage terminase large subunit BLi01464 PF17288 Terminase RNAseH like domain BLi01484 PF10779 Haemolysin XhlA BLi01485 PF04688 SPP1 phage holin BLi01486 PF08239 Bacterial SH3 domain BLi01486 PF01183 Glycosyl hydrolases family 25 BLi01487 PF07883 Cupin domain BLi01488 PF02915 Rubrerythrin BLi01489 PF04239 Protein of unknown function (DUF421) BLi01490 PF13411 MerR HTH family regulatory protein BLi01493 PF01047 MarR family BLi01494 PF01068 ATP dependent DNA ligase domain BLi01495 PF02735 Ku70/Ku80 beta-barrel domain BLi01496 PF03707 Bacterial signalling protein N terminal repeat BLi01496 PF00563 EAL domain BLi01496 PF00990 Diguanylate cyclase, GGDEF domain BLi01497 PF09335 SNARE associated Golgi protein BLi01498 PF03741 Integral membrane protein TerC family BLi01499 PF04542 Sigma-70 region 2 BLi01500 PF12791 Anti-sigma factor N-terminus BLi01501 PF00269 Small, acid-soluble spore proteins, alpha/beta type BLi01502 PF08876 Domain of unknown function (DUF1836) BLi01503 PF01435 Peptidase family M48 BLi01504 PF02386 Cation transport protein BLi01505 PF00905 Penicillin binding protein transpeptidase domain BLi01505 PF05223 NTF2-like N-terminal transpeptidase domain BLi01505 PF03717 Penicillin-binding Protein dimerisation domain BLi01508 PF01757 Acyltransferase family BLi01509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01509 PF13426 PAS domain BLi01509 PF13188 PAS domain BLi01509 PF00989 PAS fold BLi01509 PF00512 His Kinase A (phospho-acceptor) domain BLi01510 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BLi01510 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BLi01511 PF01008 Initiation factor 2 subunit family BLi01512 PF01636 Phosphotransferase enzyme family BLi01513 PF00795 Carbon-nitrogen hydrolase BLi01514 PF00155 Aminotransferase class I and II BLi01515 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BLi01515 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BLi01516 PF00596 Class II Aldolase and Adducin N-terminal domain BLi01517 PF03079 ARD/ARD' family BLi01518 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi01519 PF06803 Protein of unknown function (DUF1232) BLi01521 PF02743 Cache domain BLi01521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01521 PF00512 His Kinase A (phospho-acceptor) domain BLi01522 PF01047 MarR family BLi01523 PF13677 Membrane MotB of proton-channel complex MotA/MotB BLi01523 PF00691 OmpA family BLi01524 PF01618 MotA/TolQ/ExbB proton channel family BLi01525 PF17871 AAA lid domain BLi01525 PF07724 AAA domain (Cdc48 subfamily) BLi01525 PF10431 C-terminal, D2-small domain, of ClpB protein BLi01525 PF00004 ATPase family associated with various cellular activities (AAA) BLi01527 PF06508 Queuosine biosynthesis protein QueC BLi01528 PF01242 6-pyruvoyl tetrahydropterin synthase BLi01529 PF04055 Radical SAM superfamily BLi01530 PF14489 QueF-like protein BLi01531 PF00589 Phage integrase family BLi01531 PF02899 Phage integrase, N-terminal SAM-like domain BLi01532 PF00589 Phage integrase family BLi01532 PF02899 Phage integrase, N-terminal SAM-like domain BLi01533 PF02899 Phage integrase, N-terminal SAM-like domain BLi01533 PF00589 Phage integrase family BLi01538 PF01068 ATP dependent DNA ligase domain BLi01550 PF00574 Clp protease BLi01552 PF03423 Carbohydrate binding domain (family 25) BLi01552 PF03065 Glycosyl hydrolase family 57 BLi01552 PF00041 Fibronectin type III domain BLi01559 PF01464 Transglycosylase SLT domain BLi01565 PF09693 Phage uncharacterised protein (Phage_XkdX) BLi01566 PF03009 Glycerophosphoryl diester phosphodiesterase family BLi01567 PF10960 BhlA holin family BLi01568 PF01510 N-acetylmuramoyl-L-alanine amidase BLi01568 PF01476 LysM domain BLi01568 PF01471 Putative peptidoglycan binding domain BLi01573 PF08863 YolD-like protein BLi01574 PF00589 Phage integrase family BLi01574 PF14659 Phage integrase, N-terminal SAM-like domain BLi01577 PF18801 response regulator aspartate phosphatase H, N terminal BLi01578 PF13176 Tetratricopeptide repeat BLi01578 PF18801 response regulator aspartate phosphatase H, N terminal BLi01579 PF05675 Protein of unknown function (DUF817) BLi01580 PF13443 Cro/C1-type HTH DNA-binding domain BLi01581 PF11188 Protein of unknown function (DUF2975) BLi01588 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BLi01590 PF07486 Cell Wall Hydrolase BLi01591 PF01943 Polysaccharide biosynthesis protein BLi01592 PF00578 AhpC/TSA family BLi01594 PF01321 Creatinase/Prolidase N-terminal domain BLi01594 PF00557 Metallopeptidase family M24 BLi01596 PF00356 Bacterial regulatory proteins, lacI family BLi01596 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BLi01597 PF03123 CAT RNA binding domain BLi01597 PF00874 PRD domain BLi01598 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BLi01598 PF02378 Phosphotransferase system, EIIC BLi01598 PF00367 phosphotransferase system, EIIB BLi01599 PF00381 PTS HPr component phosphorylation site BLi01600 PF05524 PEP-utilising enzyme, N-terminal BLi01600 PF00391 PEP-utilising enzyme, mobile domain BLi01600 PF02896 PEP-utilising enzyme, TIM barrel domain BLi01601 PF11132 Transcriptional regulator protein (SplA) BLi01603 PF00583 Acetyltransferase (GNAT) family BLi01604 PF02743 Cache domain BLi01604 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi01604 PF00672 HAMP domain BLi01606 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BLi01606 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BLi01607 PF00188 Cysteine-rich secretory protein family BLi01608 PF00905 Penicillin binding protein transpeptidase domain BLi01608 PF03717 Penicillin-binding Protein dimerisation domain BLi01609 PF00512 His Kinase A (phospho-acceptor) domain BLi01609 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01609 PF08447 PAS fold BLi01609 PF00989 PAS fold BLi01610 PF00155 Aminotransferase class I and II BLi01612 PF06271 RDD family BLi01614 PF01584 CheW-like domain BLi01614 PF00072 Response regulator receiver domain BLi01615 PF14177 YkyB-like protein BLi01616 PF07690 Major Facilitator Superfamily BLi01617 PF01476 LysM domain BLi01617 PF03734 L,D-transpeptidase catalytic domain BLi01619 PF10518 TAT (twin-arginine translocation) pathway signal sequence BLi01619 PF00149 Calcineurin-like phosphoesterase BLi01621 PF00563 EAL domain BLi01621 PF10388 EAL-domain associated signalling protein domain BLi01624 PF08796 Protein of unknown function (DUF1797) BLi01625 PF04308 Ribonuclease H-like BLi01626 PF14156 Antirepressor AbbA BLi01628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi01628 PF03466 LysR substrate binding domain BLi01629 PF00258 Flavodoxin BLi01631 PF00258 Flavodoxin BLi01632 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BLi01632 PF00132 Bacterial transferase hexapeptide (six repeats) BLi01632 PF14602 Hexapeptide repeat of succinyl-transferase BLi01633 PF07687 Peptidase dimerisation domain BLi01633 PF01546 Peptidase family M20/M25/M40 BLi01634 PF03698 Uncharacterised protein family (UPF0180) BLi01635 PF10417 C-terminal domain of 1-Cys peroxiredoxin BLi01635 PF00578 AhpC/TSA family BLi01636 PF00578 AhpC/TSA family BLi01639 PF12804 MobA-like NTP transferase domain BLi01640 PF00899 ThiF family BLi01641 PF03454 MoeA C-terminal region (domain IV) BLi01641 PF00994 Probable molybdopterin binding domain BLi01641 PF03453 MoeA N-terminal region (domain I and II) BLi01642 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BLi01643 PF02391 MoaE protein BLi01644 PF02597 ThiS family BLi01646 PF00005 ABC transporter BLi01646 PF00664 ABC transporter transmembrane region BLi01647 PF00664 ABC transporter transmembrane region BLi01647 PF00005 ABC transporter BLi01648 PF04893 Yip1 domain BLi01649 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BLi01650 PF00005 ABC transporter BLi01651 PF02687 FtsX-like permease family BLi01651 PF12704 MacB-like periplasmic core domain BLi01652 PF00455 DeoR C terminal sensor domain BLi01652 PF08220 DeoR-like helix-turn-helix domain BLi01653 PF00294 pfkB family carbohydrate kinase BLi01654 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi01654 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi01655 PF10502 Signal peptidase, peptidase S26 BLi01658 PF12848 ABC transporter BLi01658 PF00005 ABC transporter BLi01660 PF02073 Thermophilic metalloprotease (M29) BLi01661 PF17447 Uncharacterized YkpC-like BLi01664 PF18277 AbrB C-terminal domain BLi01664 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BLi01665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01665 PF00512 His Kinase A (phospho-acceptor) domain BLi01665 PF00989 PAS fold BLi01666 PF02080 TrkA-C domain BLi01666 PF02254 TrkA-N domain BLi01667 PF13382 Adenine deaminase C-terminal domain BLi01667 PF01979 Amidohydrolase family BLi01668 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BLi01668 PF17770 Ribonuclease J C-terminal domain BLi01668 PF00753 Metallo-beta-lactamase superfamily BLi01671 PF01327 Polypeptide deformylase BLi01673 PF10368 Putative cell-wall binding lipoprotein BLi01674 PF00676 Dehydrogenase E1 component BLi01675 PF02780 Transketolase, C-terminal domain BLi01675 PF02779 Transketolase, pyrimidine binding domain BLi01676 PF00364 Biotin-requiring enzyme BLi01676 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BLi01676 PF02817 e3 binding domain BLi01677 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi01677 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BLi01678 PF13333 Integrase core domain BLi01678 PF13276 HTH-like domain BLi01678 PF00665 Integrase core domain BLi01681 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BLi01681 PF01276 Orn/Lys/Arg decarboxylase, major domain BLi01682 PF05256 Uncharacterised protein family (UPF0223) BLi01683 PF06335 Protein of unknown function (DUF1054) BLi01685 PF00459 Inositol monophosphatase family BLi01686 PF00583 Acetyltransferase (GNAT) family BLi01689 PF08281 Sigma-70, region 4 BLi01689 PF04542 Sigma-70 region 2 BLi01690 PF13490 Putative zinc-finger BLi01693 PF14036 YlaH-like protein BLi01694 PF01047 MarR family BLi01695 PF01494 FAD binding domain BLi01696 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BLi01697 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BLi01698 PF13638 PIN domain BLi01698 PF02562 PhoH-like protein BLi01700 PF04960 Glutaminase BLi01701 PF07408 Protein of unknown function (DUF1507) BLi01702 PF01098 Cell cycle protein BLi01703 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BLi01703 PF00682 HMGL-like BLi01703 PF02436 Conserved carboxylase domain BLi01703 PF00289 Biotin carboxylase, N-terminal domain BLi01703 PF02785 Biotin carboxylase C-terminal domain BLi01703 PF00364 Biotin-requiring enzyme BLi01704 PF02628 Cytochrome oxidase assembly protein BLi01705 PF01040 UbiA prenyltransferase family BLi01706 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BLi01706 PF00034 Cytochrome c BLi01706 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BLi01707 PF00115 Cytochrome C and Quinol oxidase polypeptide I BLi01708 PF00510 Cytochrome c oxidase subunit III BLi01709 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BLi01710 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BLi01711 PF08868 YugN-like family BLi01712 PF00571 CBS domain BLi01713 PF00188 Cysteine-rich secretory protein family BLi01713 PF14504 CAP-associated N-terminal BLi01714 PF14071 Putative coat protein BLi01715 PF14003 YlbE-like protein BLi01716 PF06133 Control of competence regulator ComK, YlbF/YmcA BLi01717 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BLi01719 PF01467 Cytidylyltransferase-like BLi01720 PF07670 Nucleoside recognition BLi01722 PF13180 PDZ domain BLi01722 PF05362 Lon protease (S16) C-terminal proteolytic domain BLi01723 PF05636 HIGH Nucleotidyl Transferase BLi01724 PF02620 Large ribosomal RNA subunit accumulation protein YceD BLi01725 PF01783 Ribosomal L32p protein family BLi01727 PF00583 Acetyltransferase (GNAT) family BLi01728 PF08546 Ketopantoate reductase PanE/ApbA C terminal BLi01728 PF02558 Ketopantoate reductase PanE/ApbA BLi01729 PF10079 Bacillithiol biosynthesis BshC BLi01730 PF02381 MraZ protein, putative antitoxin-like BLi01731 PF01795 MraW methylase family BLi01734 PF03793 PASTA domain BLi01734 PF03717 Penicillin-binding Protein dimerisation domain BLi01734 PF00905 Penicillin binding protein transpeptidase domain BLi01735 PF01225 Mur ligase family, catalytic domain BLi01735 PF02875 Mur ligase family, glutamate ligase domain BLi01735 PF08245 Mur ligase middle domain BLi01736 PF00953 Glycosyl transferase family 4 BLi01736 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BLi01737 PF02875 Mur ligase family, glutamate ligase domain BLi01737 PF08245 Mur ligase middle domain BLi01738 PF01098 Cell cycle protein BLi01739 PF04101 Glycosyltransferase family 28 C-terminal domain BLi01739 PF03033 Glycosyltransferase family 28 N-terminal domain BLi01740 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BLi01740 PF01565 FAD binding domain BLi01741 PF08478 POTRA domain, FtsQ-type BLi01742 PF05949 Bacterial protein of unknown function (DUF881) BLi01743 PF05949 Bacterial protein of unknown function (DUF881) BLi01744 PF06947 Protein of unknown function (DUF1290) BLi01745 PF02491 SHS2 domain inserted in FTSA BLi01746 PF12327 FtsZ family, C-terminal domain BLi01746 PF00091 Tubulin/FtsZ family, GTPase domain BLi01748 PF05922 Peptidase inhibitor I9 BLi01748 PF00082 Subtilase family BLi01749 PF03419 Sporulation factor SpoIIGA BLi01750 PF04542 Sigma-70 region 2 BLi01750 PF04545 Sigma-70, region 4 BLi01751 PF04545 Sigma-70, region 4 BLi01751 PF04542 Sigma-70 region 2 BLi01751 PF04539 Sigma-70 region 3 BLi01752 PF00005 ABC transporter BLi01754 PF08241 Methyltransferase domain BLi01755 PF05239 PRC-barrel domain BLi01757 PF01168 Alanine racemase, N-terminal domain BLi01758 PF04472 Cell division protein SepF BLi01759 PF02325 YGGT family BLi01760 PF01479 S4 domain BLi01760 PF17774 Putative RNA-binding domain in YlmH BLi01761 PF05103 DivIVA protein BLi01762 PF08264 Anticodon-binding domain of tRNA BLi01762 PF00133 tRNA synthetases class I (I, L, M and V) BLi01762 PF06827 Zinc finger found in FPG and IleRS BLi01763 PF01258 Prokaryotic dksA/traR C4-type zinc finger BLi01765 PF01252 Signal peptidase (SPase) II BLi01766 PF00849 RNA pseudouridylate synthase BLi01766 PF01479 S4 domain BLi01767 PF00156 Phosphoribosyl transferase domain BLi01768 PF00860 Permease family BLi01769 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BLi01769 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BLi01770 PF01979 Amidohydrolase family BLi01771 PF00117 Glutamine amidotransferase class-I BLi01771 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BLi01772 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BLi01772 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BLi01772 PF02142 MGS-like domain BLi01773 PF00175 Oxidoreductase NAD-binding domain BLi01773 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BLi01774 PF01180 Dihydroorotate dehydrogenase BLi01775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BLi01776 PF00156 Phosphoribosyl transferase domain BLi01778 PF01507 Phosphoadenosine phosphosulfate reductase family BLi01779 PF01384 Phosphate transporter family BLi01780 PF01747 ATP-sulfurylase BLi01780 PF14306 PUA-like domain BLi01782 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BLi01783 PF01903 CbiX BLi01786 PF00689 Cation transporting ATPase, C-terminus BLi01786 PF00690 Cation transporter/ATPase, N-terminus BLi01787 PF03755 YicC-like family, N-terminal region BLi01787 PF08340 Domain of unknown function (DUF1732) BLi01788 PF04025 Domain of unknown function (DUF370) BLi01789 PF00625 Guanylate kinase BLi01790 PF01192 RNA polymerase Rpb6 BLi01791 PF04127 DNA / pantothenate metabolism flavoprotein BLi01791 PF02441 Flavoprotein BLi01792 PF04851 Type III restriction enzyme, res subunit BLi01792 PF17764 3′ DNA-binding domain (3′BD) BLi01792 PF00271 Helicase conserved C-terminal domain BLi01792 PF18074 Primosomal protein N C-terminal domain BLi01792 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BLi01793 PF01327 Polypeptide deformylase BLi01794 PF02911 Formyl transferase, C-terminal domain BLi01794 PF00551 Formyl transferase BLi01795 PF01029 NusB family BLi01795 PF01189 16S rRNA methyltransferase RsmB/F BLi01796 PF04055 Radical SAM superfamily BLi01798 PF03793 PASTA domain BLi01798 PF00069 Protein kinase domain BLi01799 PF16745 RsgA N-terminal domain BLi01799 PF03193 RsgA GTPase BLi01800 PF00834 Ribulose-phosphate 3 epimerase family BLi01801 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BLi01801 PF04263 Thiamin pyrophosphokinase, catalytic domain BLi01802 PF08183 Stage V sporulation protein family BLi01803 PF00830 Ribosomal L28 family BLi01804 PF03780 Asp23 family, cell envelope-related function BLi01805 PF13684 Dihydroxyacetone kinase family BLi01805 PF02734 DAK2 domain BLi01806 PF01842 ACT domain BLi01806 PF03315 Serine dehydratase beta chain BLi01807 PF03313 Serine dehydratase alpha chain BLi01808 PF17191 RecG wedge domain BLi01808 PF00270 DEAD/DEAH box helicase BLi01808 PF00271 Helicase conserved C-terminal domain BLi01809 PF03061 Thioesterase superfamily BLi01809 PF08279 HTH domain BLi01810 PF02504 Fatty acid synthesis protein BLi01811 PF00698 Acyl transferase domain BLi01813 PF00550 Phosphopantetheine attachment site BLi01814 PF14622 Ribonuclease-III-like BLi01814 PF00035 Double-stranded RNA binding motif BLi01815 PF02463 RecF/RecN/SMC N terminal domain BLi01815 PF06470 SMC proteins Flexible Hinge Domain BLi01816 PF02881 SRP54-type protein, helical bundle domain BLi01816 PF00448 SRP54-type protein, GTPase domain BLi01817 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BLi01818 PF00448 SRP54-type protein, GTPase domain BLi01818 PF02978 Signal peptide binding domain BLi01818 PF02881 SRP54-type protein, helical bundle domain BLi01819 PF00886 Ribosomal protein S16 BLi01821 PF11068 YlqD protein BLi01822 PF05239 PRC-barrel domain BLi01822 PF01782 RimM N-terminal domain BLi01823 PF01746 tRNA (Guanine-1)-methyltransferase BLi01824 PF01245 Ribosomal protein L19 BLi01825 PF01926 50S ribosome-binding GTPase BLi01826 PF01351 Ribonuclease HII BLi01828 PF01312 FlhB HrpN YscU SpaS Family BLi01829 PF00549 CoA-ligase BLi01829 PF08442 ATP-grasp domain BLi01830 PF02629 CoA binding domain BLi01830 PF00549 CoA-ligase BLi01831 PF02481 DNA recombination-mediator protein A BLi01832 PF01131 DNA topoisomerase BLi01832 PF01396 Topoisomerase DNA binding C4 zinc finger BLi01832 PF01751 Toprim domain BLi01833 PF01134 Glucose inhibited division protein A BLi01834 PF00589 Phage integrase family BLi01834 PF02899 Phage integrase, N-terminal SAM-like domain BLi01835 PF00227 Proteasome subunit BLi01836 PF10431 C-terminal, D2-small domain, of ClpB protein BLi01836 PF07724 AAA domain (Cdc48 subfamily) BLi01836 PF00004 ATPase family associated with various cellular activities (AAA) BLi01837 PF08222 CodY helix-turn-helix domain BLi01837 PF06018 CodY GAF-like domain BLi01838 PF00460 Flagella basal body rod protein BLi01839 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BLi01839 PF00460 Flagella basal body rod protein BLi01840 PF02049 Flagellar hook-basal body complex protein FliE BLi01841 PF08345 Flagellar M-ring protein C-terminal BLi01841 PF01514 Secretory protein of YscJ/FliF family BLi01842 PF14842 FliG N-terminal domain BLi01842 PF14841 FliG middle domain BLi01842 PF01706 FliG C-terminal domain BLi01843 PF02108 Flagellar assembly protein FliH BLi01844 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BLi01844 PF18269 T3SS EscN ATPase C-terminal domain BLi01844 PF02874 ATP synthase alpha/beta family, beta-barrel domain BLi01845 PF02050 Flagellar FliJ protein BLi01847 PF02120 Flagellar hook-length control protein FliK BLi01848 PF03963 Flagellar hook capping protein - N-terminal region BLi01849 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BLi01849 PF00460 Flagella basal body rod protein BLi01850 PF06289 Flagellar and Swarming motility proteins BLi01851 PF03748 Flagellar basal body-associated protein FliL BLi01852 PF02154 Flagellar motor switch protein FliM BLi01852 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BLi01853 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BLi01853 PF04509 CheC-like family BLi01854 PF00072 Response regulator receiver domain BLi01855 PF04347 Flagellar biosynthesis protein, FliO BLi01856 PF00813 FliP family BLi01857 PF01313 Bacterial export proteins, family 3 BLi01858 PF01311 Bacterial export proteins, family 1 BLi01859 PF01312 FlhB HrpN YscU SpaS Family BLi01860 PF00771 FHIPEP family BLi01861 PF00448 SRP54-type protein, GTPase domain BLi01862 PF10609 NUBPL iron-transfer P-loop NTPase BLi01863 PF00072 Response regulator receiver domain BLi01863 PF01339 CheB methylesterase BLi01864 PF07194 P2 response regulator binding domain BLi01864 PF01627 Hpt domain BLi01864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi01864 PF01584 CheW-like domain BLi01864 PF02895 Signal transducing histidine kinase, homodimeric domain BLi01865 PF01584 CheW-like domain BLi01866 PF04509 CheC-like family BLi01867 PF03975 CheD chemotactic sensory transduction BLi01868 PF04539 Sigma-70 region 3 BLi01868 PF04542 Sigma-70 region 2 BLi01868 PF04545 Sigma-70, region 4 BLi01870 PF00318 Ribosomal protein S2 BLi01871 PF00889 Elongation factor TS BLi01872 PF00696 Amino acid kinase family BLi01873 PF01765 Ribosome recycling factor BLi01874 PF01255 Putative undecaprenyl diphosphate synthase BLi01876 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BLi01876 PF13288 DXP reductoisomerase C-terminal domain BLi01876 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BLi01877 PF02163 Peptidase family M50 BLi01877 PF17820 PDZ domain BLi01878 PF03129 Anticodon binding domain BLi01878 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BLi01878 PF04073 Aminoacyl-tRNA editing domain BLi01879 PF07733 Bacterial DNA polymerase III alpha NTPase domain BLi01879 PF02811 PHP domain BLi01879 PF14579 Helix-hairpin-helix motif BLi01879 PF14480 DNA polymerase III polC-type N-terminus I BLi01879 PF11490 DNA polymerase III polC-type N-terminus II BLi01879 PF00929 Exonuclease BLi01879 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BLi01880 PF00759 Glycosyl hydrolase family 9 BLi01880 PF00942 Cellulose binding domain BLi01881 PF00942 Cellulose binding domain BLi01881 PF02011 Glycosyl hydrolase family 48 BLi01881 PF00759 Glycosyl hydrolase family 9 BLi01882 PF18448 Carbohydrate binding domain BLi01882 PF03442 Carbohydrate binding domain X2 BLi01882 PF00150 Cellulase (glycosyl hydrolase family 5) BLi01884 PF02576 RimP N-terminal domain BLi01884 PF17384 RimP C-terminal SH3 domain BLi01885 PF08529 NusA N-terminal domain BLi01885 PF13184 NusA-like KH domain BLi01885 PF00575 S1 RNA binding domain BLi01886 PF04296 Protein of unknown function (DUF448) BLi01887 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BLi01888 PF11987 Translation-initiation factor 2 BLi01888 PF04760 Translation initiation factor IF-2, N-terminal region BLi01888 PF00009 Elongation factor Tu GTP binding domain BLi01889 PF04456 Protein of unknown function (DUF503) BLi01890 PF02033 Ribosome-binding factor A BLi01891 PF01509 TruB family pseudouridylate synthase (N terminal domain) BLi01891 PF16198 tRNA pseudouridylate synthase B C-terminal domain BLi01892 PF06574 FAD synthetase BLi01892 PF01687 Riboflavin kinase BLi01893 PF00312 Ribosomal protein S15 BLi01894 PF00013 KH domain BLi01894 PF03725 3' exoribonuclease family, domain 2 BLi01894 PF00575 S1 RNA binding domain BLi01894 PF01138 3' exoribonuclease family, domain 1 BLi01894 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BLi01895 PF01522 Polysaccharide deacetylase BLi01896 PF00675 Insulinase (Peptidase family M16) BLi01896 PF05193 Peptidase M16 inactive domain BLi01897 PF05239 PRC-barrel domain BLi01898 PF16924 Dipicolinate synthase subunit A N-terminal domain BLi01898 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BLi01899 PF02441 Flavoprotein BLi01900 PF01118 Semialdehyde dehydrogenase, NAD binding domain BLi01900 PF02774 Semialdehyde dehydrogenase, dimerisation domain BLi01901 PF13840 ACT domain BLi01901 PF00696 Amino acid kinase family BLi01902 PF00701 Dihydrodipicolinate synthetase family BLi01903 PF17770 Ribonuclease J C-terminal domain BLi01903 PF00753 Metallo-beta-lactamase superfamily BLi01903 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BLi01904 PF00574 Clp protease BLi01905 PF14035 YlzJ-like protein BLi01906 PF01580 FtsK/SpoIIIE family BLi01906 PF17854 FtsK alpha domain BLi01906 PF09397 Ftsk gamma domain BLi01907 PF07702 UTRA domain BLi01907 PF00392 Bacterial regulatory proteins, gntR family BLi01908 PF07690 Major Facilitator Superfamily BLi01909 PF05193 Peptidase M16 inactive domain BLi01910 PF05193 Peptidase M16 inactive domain BLi01910 PF00675 Insulinase (Peptidase family M16) BLi01912 PF11588 Protein of unknown function (DUF3243) BLi01913 PF11868 Protein of unknown function (DUF3388) BLi01915 PF13464 Domain of unknown function (DUF4115) BLi01916 PF01066 CDP-alcohol phosphatidyltransferase BLi01917 PF02464 Competence-damaged protein BLi01917 PF18146 Damage-inducible protein CinA KH domain BLi01917 PF00994 Probable molybdopterin binding domain BLi01918 PF00154 recA bacterial DNA recombination protein BLi01919 PF01966 HD domain BLi01919 PF00013 KH domain BLi01919 PF12072 Domain of unknown function (DUF3552) BLi01920 PF13277 YmdB-like protein BLi01921 PF04232 Stage V sporulation protein S (SpoVS) BLi01922 PF01244 Membrane dipeptidase (Peptidase family M19) BLi01923 PF08240 Alcohol dehydrogenase GroES-like domain BLi01923 PF00107 Zinc-binding dehydrogenase BLi01924 PF00155 Aminotransferase class I and II BLi01925 PF00919 Uncharacterized protein family UPF0004 BLi01925 PF01938 TRAM domain BLi01925 PF04055 Radical SAM superfamily BLi01926 PF06133 Control of competence regulator ComK, YlbF/YmcA BLi01927 PF10628 Outer spore coat protein E (CotE) BLi01928 PF05190 MutS family domain IV BLi01928 PF05188 MutS domain II BLi01928 PF00488 MutS domain V BLi01928 PF01624 MutS domain I BLi01928 PF05192 MutS domain III BLi01929 PF01119 DNA mismatch repair protein, C-terminal domain BLi01929 PF08676 MutL C terminal dimerisation domain BLi01930 PF03992 Antibiotic biosynthesis monooxygenase BLi01931 PF14449 Pre-toxin TG BLi01931 PF04740 LXG domain of WXG superfamily BLi01933 PF07683 Cobalamin synthesis protein cobW C-terminal domain BLi01933 PF02492 CobW/HypB/UreG, nucleotide-binding domain BLi01935 PF00583 Acetyltransferase (GNAT) family BLi01939 PF06912 Protein of unknown function (DUF1275) BLi01940 PF00999 Sodium/hydrogen exchanger family BLi01940 PF03471 Transporter associated domain BLi01940 PF02080 TrkA-C domain BLi01943 PF00561 alpha/beta hydrolase fold BLi01944 PF00561 alpha/beta hydrolase fold BLi01945 PF01906 Putative heavy-metal-binding BLi01946 PF09335 SNARE associated Golgi protein BLi01947 PF00144 Beta-lactamase BLi01947 PF11954 Domain of unknown function (DUF3471) BLi01948 PF04101 Glycosyltransferase family 28 C-terminal domain BLi01949 PF13520 Amino acid permease BLi01950 PF07875 Coat F domain BLi01952 PF00704 Glycosyl hydrolases family 18 BLi01952 PF01476 LysM domain BLi01953 PF00440 Bacterial regulatory proteins, tetR family BLi01954 PF12680 SnoaL-like domain BLi01955 PF01370 NAD dependent epimerase/dehydratase family BLi01957 PF02566 OsmC-like protein BLi01958 PF00893 Small Multidrug Resistance protein BLi01959 PF00893 Small Multidrug Resistance protein BLi01960 PF12788 YmaF family BLi01962 PF17209 Hfq protein BLi01965 PF07972 NrdI Flavodoxin like BLi01966 PF00317 Ribonucleotide reductase, all-alpha domain BLi01966 PF02867 Ribonucleotide reductase, barrel domain BLi01966 PF08343 Ribonucleotide reductase N-terminal BLi01967 PF00268 Ribonucleotide reductase, small chain BLi01969 PF00753 Metallo-beta-lactamase superfamily BLi01970 PF01592 NifU-like N terminal domain BLi01971 PF01475 Ferric uptake regulator family BLi01972 PF07729 FCD domain BLi01972 PF00392 Bacterial regulatory proteins, gntR family BLi01973 PF13536 Putative multidrug resistance efflux transporter BLi01974 PF05036 Sporulation related domain BLi01974 PF01520 N-acetylmuramoyl-L-alanine amidase BLi01979 PF00440 Bacterial regulatory proteins, tetR family BLi01982 PF01968 Hydantoinase/oxoprolinase BLi01982 PF05378 Hydantoinase/oxoprolinase N-terminal region BLi01984 PF02538 Hydantoinase B/oxoprolinase BLi01989 PF00004 ATPase family associated with various cellular activities (AAA) BLi01989 PF17866 AAA lid domain BLi01990 PF13167 GTP-binding GTPase N-terminal BLi01990 PF16360 GTP-binding GTPase Middle Region BLi01990 PF01926 50S ribosome-binding GTPase BLi01991 PF06838 Methionine gamma-lyase BLi01992 PF13411 MerR HTH family regulatory protein BLi01993 PF03951 Glutamine synthetase, beta-Grasp domain BLi01993 PF00120 Glutamine synthetase, catalytic domain BLi01998 PF01230 HIT domain BLi02004 PF16302 Domain of unknown function (DUF4944) BLi02009 PF17934 Tetracyclin repressor-like, C-terminal domain BLi02009 PF00440 Bacterial regulatory proteins, tetR family BLi02010 PF00893 Small Multidrug Resistance protein BLi02011 PF00893 Small Multidrug Resistance protein BLi02012 PF13302 Acetyltransferase (GNAT) domain BLi02016 PF08534 Redoxin BLi02017 PF05067 Manganese containing catalase BLi02021 PF00440 Bacterial regulatory proteins, tetR family BLi02021 PF08360 QacR-like protein, C-terminal region BLi02022 PF01047 MarR family BLi02023 PF00881 Nitroreductase family BLi02024 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi02025 PF01613 Flavin reductase like domain BLi02026 PF03358 NADPH-dependent FMN reductase BLi02029 PF00303 Thymidylate synthase BLi02030 PF14040 Deoxyribonuclease NucA/NucB BLi02032 PF01726 LexA DNA binding domain BLi02032 PF00717 Peptidase S24-like BLi02033 PF01476 LysM domain BLi02034 PF00239 Resolvase, N terminal domain BLi02035 PF05979 Bacterial protein of unknown function (DUF896) BLi02036 PF02779 Transketolase, pyrimidine binding domain BLi02036 PF00456 Transketolase, thiamine diphosphate binding domain BLi02036 PF02780 Transketolase, C-terminal domain BLi02037 PF10747 Sporulation inhibitor of replication protein SirA BLi02038 PF03672 Uncharacterised protein family (UPF0154) BLi02039 PF09388 Spo0E like sporulation regulatory protein BLi02040 PF02683 Cytochrome C biogenesis protein transmembrane region BLi02041 PF00072 Response regulator receiver domain BLi02042 PF07301 Protein of unknown function (DUF1453) BLi02043 PF11084 Protein of unknown function (DUF2621) BLi02045 PF08179 Small acid-soluble spore protein P family BLi02047 PF00330 Aconitase family (aconitate hydratase) BLi02047 PF00694 Aconitase C-terminal domain BLi02048 PF00578 AhpC/TSA family BLi02049 PF13040 Fur-regulated basic protein B BLi02050 PF08177 Small acid-soluble spore protein N family BLi02052 PF03061 Thioesterase superfamily BLi02056 PF01521 Iron-sulphur cluster biosynthesis BLi02057 PF02660 Glycerol-3-phosphate acyltransferase BLi02058 PF13380 CoA binding domain BLi02059 PF01751 Toprim domain BLi02059 PF00204 DNA gyrase B BLi02059 PF00986 DNA gyrase B subunit, carboxyl terminus BLi02059 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi02060 PF00521 DNA gyrase/topoisomerase IV, subunit A BLi02060 PF03989 DNA gyrase C-terminal domain, beta-propeller BLi02061 PF00392 Bacterial regulatory proteins, gntR family BLi02063 PF00596 Class II Aldolase and Adducin N-terminal domain BLi02064 PF11762 L-arabinose isomerase C-terminal domain BLi02064 PF02610 L-arabinose isomerase BLi02065 PF00083 Sugar (and other) transporter BLi02066 PF00106 short chain dehydrogenase BLi02069 PF01235 Sodium:alanine symporter family BLi02071 PF02665 Nitrate reductase gamma subunit BLi02072 PF02613 Nitrate reductase delta subunit BLi02073 PF14711 Respiratory nitrate reductase beta C-terminal BLi02073 PF13247 4Fe-4S dicluster domain BLi02074 PF00384 Molybdopterin oxidoreductase BLi02074 PF01568 Molydopterin dinucleotide binding domain BLi02074 PF14710 Respiratory nitrate reductase alpha N-terminal BLi02077 PF04055 Radical SAM superfamily BLi02077 PF06463 Molybdenum Cofactor Synthesis C BLi02079 PF14256 YwiC-like protein BLi02080 PF00325 Bacterial regulatory proteins, crp family BLi02080 PF00027 Cyclic nucleotide-binding domain BLi02081 PF07690 Major Facilitator Superfamily BLi02083 PF00027 Cyclic nucleotide-binding domain BLi02083 PF13545 Crp-like helix-turn-helix domain BLi02084 PF00115 Cytochrome C and Quinol oxidase polypeptide I BLi02085 PF01814 Hemerythrin HHE cation binding domain BLi02085 PF04405 Domain of Unknown function (DUF542) BLi02086 PF07098 Protein of unknown function (DUF1360) BLi02088 PF00942 Cellulose binding domain BLi02088 PF00150 Cellulase (glycosyl hydrolase family 5) BLi02089 PF17452 Uncharacterized YnfE-like BLi02090 PF13302 Acetyltransferase (GNAT) domain BLi02092 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi02095 PF13229 Right handed beta helix region BLi02096 PF05525 Branched-chain amino acid transport protein BLi02097 PF08240 Alcohol dehydrogenase GroES-like domain BLi02097 PF00107 Zinc-binding dehydrogenase BLi02098 PF13411 MerR HTH family regulatory protein BLi02100 PF12706 Beta-lactamase superfamily domain BLi02103 PF00378 Enoyl-CoA hydratase/isomerase BLi02104 PF00171 Aldehyde dehydrogenase family BLi02105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BLi02105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BLi02106 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BLi02106 PF02770 Acyl-CoA dehydrogenase, middle domain BLi02106 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BLi02107 PF01238 Phosphomannose isomerase type I BLi02108 PF02378 Phosphotransferase system, EIIC BLi02108 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi02108 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi02111 PF05043 Mga helix-turn-helix domain BLi02111 PF00874 PRD domain BLi02111 PF08279 HTH domain BLi02111 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi02113 PF00005 ABC transporter BLi02114 PF00392 Bacterial regulatory proteins, gntR family BLi02115 PF00106 short chain dehydrogenase BLi02116 PF03786 D-mannonate dehydratase (UxuA) BLi02117 PF01055 Glycosyl hydrolases family 31 BLi02117 PF16338 Domain of unknown function (DUF4968) BLi02117 PF13802 Galactose mutarotase-like BLi02117 PF17137 Domain of unknown function (DUF5110) BLi02118 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BLi02119 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BLi02120 PF03480 Bacterial extracellular solute-binding protein, family 7 BLi02121 PF00356 Bacterial regulatory proteins, lacI family BLi02122 PF01451 Low molecular weight phosphotyrosine protein phosphatase BLi02123 PF02040 Arsenical pump membrane protein BLi02124 PF01022 Bacterial regulatory protein, arsR family BLi02126 PF08818 Domain of unknown function (DU1801) BLi02128 PF06800 Sugar transport protein BLi02129 PF02638 Glycosyl hydrolase-like 10 BLi02131 PF04055 Radical SAM superfamily BLi02132 PF02901 Pyruvate formate lyase-like BLi02132 PF01228 Glycine radical BLi02133 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BLi02134 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi02135 PF07849 Protein of unknown function (DUF1641) BLi02136 PF12728 Helix-turn-helix domain BLi02138 PF00501 AMP-binding enzyme BLi02138 PF16177 Acetyl-coenzyme A synthetase N-terminus BLi02138 PF13193 AMP-binding enzyme C-terminal domain BLi02139 PF01039 Carboxyl transferase domain BLi02140 PF00378 Enoyl-CoA hydratase/isomerase BLi02141 PF00682 HMGL-like BLi02142 PF00364 Biotin-requiring enzyme BLi02143 PF02785 Biotin carboxylase C-terminal domain BLi02143 PF00289 Biotin carboxylase, N-terminal domain BLi02143 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BLi02144 PF00501 AMP-binding enzyme BLi02144 PF13193 AMP-binding enzyme C-terminal domain BLi02145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BLi02145 PF02770 Acyl-CoA dehydrogenase, middle domain BLi02145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BLi02146 PF02525 Flavodoxin-like fold BLi02147 PF01638 HxlR-like helix-turn-helix BLi02148 PF00171 Aldehyde dehydrogenase family BLi02149 PF00696 Amino acid kinase family BLi02149 PF01472 PUA domain BLi02150 PF03807 NADP oxidoreductase coenzyme F420-dependent BLi02150 PF14748 Pyrroline-5-carboxylate reductase dimerisation BLi02151 PF04239 Protein of unknown function (DUF421) BLi02153 PF01384 Phosphate transporter family BLi02154 PF01507 Phosphoadenosine phosphosulfate reductase family BLi02155 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) BLi02156 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BLi02157 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BLi02157 PF13378 Enolase C-terminal domain-like BLi02158 PF07690 Major Facilitator Superfamily BLi02159 PF00535 Glycosyl transferase family 2 BLi02161 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BLi02161 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi02162 PF00310 Glutamine amidotransferases class-II BLi02162 PF01493 GXGXG motif BLi02162 PF04898 Glutamate synthase central domain BLi02162 PF01645 Conserved region in glutamate synthase BLi02163 PF03466 LysR substrate binding domain BLi02163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi02167 PF01047 MarR family BLi02168 PF00664 ABC transporter transmembrane region BLi02168 PF00005 ABC transporter BLi02169 PF00005 ABC transporter BLi02169 PF00664 ABC transporter transmembrane region BLi02170 PF00067 Cytochrome P450 BLi02171 PF00106 short chain dehydrogenase BLi02172 PF00391 PEP-utilising enzyme, mobile domain BLi02172 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BLi02173 PF07690 Major Facilitator Superfamily BLi02174 PF00384 Molybdopterin oxidoreductase BLi02174 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BLi02174 PF01568 Molydopterin dinucleotide binding domain BLi02175 PF01047 MarR family BLi02176 PF07690 Major Facilitator Superfamily BLi02177 PF03845 Spore germination protein BLi02178 PF05504 Spore germination B3/ GerAC like, C-terminal BLi02179 PF03845 Spore germination protein BLi02180 PF03845 Spore germination protein BLi02181 PF03323 Bacillus/Clostridium GerA spore germination protein BLi02183 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi02183 PF00672 HAMP domain BLi02183 PF02743 Cache domain BLi02184 PF01588 Putative tRNA binding domain BLi02185 PF00082 Subtilase family BLi02187 PF17932 Tetracyclin repressor-like, C-terminal domain BLi02187 PF00440 Bacterial regulatory proteins, tetR family BLi02188 PF01047 MarR family BLi02189 PF01966 HD domain BLi02191 PF14158 YndJ-like protein BLi02192 PF13761 Domain of unknown function (DUF4166) BLi02194 PF00440 Bacterial regulatory proteins, tetR family BLi02194 PF13305 Tetracyclin repressor-like, C-terminal domain BLi02195 PF00753 Metallo-beta-lactamase superfamily BLi02196 PF06445 GyrI-like small molecule binding domain BLi02199 PF13280 WYL domain BLi02199 PF08279 HTH domain BLi02201 PF01022 Bacterial regulatory protein, arsR family BLi02203 PF00324 Amino acid permease BLi02205 PF02719 Polysaccharide biosynthesis protein BLi02208 PF00534 Glycosyl transferases group 1 BLi02209 PF04238 Protein of unknown function (DUF420) BLi02212 PF00474 Sodium:solute symporter family BLi02213 PF01476 LysM domain BLi02213 PF06725 3D domain BLi02214 PF00270 DEAD/DEAH box helicase BLi02214 PF00570 HRDC domain BLi02214 PF16124 RecQ zinc-binding BLi02214 PF09382 RQC domain BLi02214 PF00271 Helicase conserved C-terminal domain BLi02218 PF04237 YjbR BLi02221 PF07849 Protein of unknown function (DUF1641) BLi02222 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BLi02222 PF00384 Molybdopterin oxidoreductase BLi02222 PF01568 Molydopterin dinucleotide binding domain BLi02222 PF12838 4Fe-4S dicluster domain BLi02222 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BLi02226 PF12945 Flagellar protein YcgR BLi02226 PF07238 PilZ domain BLi02230 PF13217 Protein of unknown function (DUF4025) BLi02233 PF01979 Amidohydrolase family BLi02234 PF11122 Inner spore coat protein D BLi02236 PF00561 alpha/beta hydrolase fold BLi02236 PF08386 TAP-like protein BLi02238 PF01810 LysE type translocator BLi02239 PF00253 Ribosomal protein S14p/S29e BLi02240 PF00293 NUDIX domain BLi02240 PF13344 Haloacid dehalogenase-like hydrolase BLi02241 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BLi02241 PF00391 PEP-utilising enzyme, mobile domain BLi02242 PF00440 Bacterial regulatory proteins, tetR family BLi02243 PF10710 Protein of unknown function (DUF2512) BLi02244 PF05163 DinB family BLi02245 PF02525 Flavodoxin-like fold BLi02246 PF01258 Prokaryotic dksA/traR C4-type zinc finger BLi02247 PF08000 Bacterial PH domain BLi02249 PF00171 Aldehyde dehydrogenase family BLi02250 PF07690 Major Facilitator Superfamily BLi02251 PF01636 Phosphotransferase enzyme family BLi02253 PF13243 Squalene-hopene cyclase C-terminal domain BLi02253 PF13249 Squalene-hopene cyclase N-terminal domain BLi02254 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BLi02254 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BLi02256 PF00209 Sodium:neurotransmitter symporter family BLi02258 PF01758 Sodium Bile acid symporter family BLi02259 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BLi02259 PF00364 Biotin-requiring enzyme BLi02259 PF02817 e3 binding domain BLi02260 PF16870 2-oxoglutarate dehydrogenase C-terminal BLi02260 PF00676 Dehydrogenase E1 component BLi02260 PF02779 Transketolase, pyrimidine binding domain BLi02261 PF00092 von Willebrand factor type A domain BLi02262 PF07728 AAA domain (dynein-related subfamily) BLi02263 PF13627 Prokaryotic lipoprotein-attachment site BLi02263 PF00080 Copper/zinc superoxide dismutase (SODC) BLi02264 PF01476 LysM domain BLi02264 PF00877 NlpC/P60 family BLi02265 PF01554 MatE BLi02266 PF02585 GlcNAc-PI de-N-acetylase BLi02267 PF08830 Protein of unknown function (DUF1806) BLi02269 PF00892 EamA-like transporter family BLi02271 PF03330 Lytic transglycolase BLi02274 PF01638 HxlR-like helix-turn-helix BLi02275 PF00881 Nitroreductase family BLi02276 PF01738 Dienelactone hydrolase family BLi02277 PF11755 Protein of unknown function (DUF3311) BLi02278 PF00474 Sodium:solute symporter family BLi02280 PF13333 Integrase core domain BLi02280 PF00665 Integrase core domain BLi02280 PF13276 HTH-like domain BLi02281 PF01471 Putative peptidoglycan binding domain BLi02281 PF17820 PDZ domain BLi02281 PF03572 Peptidase family S41 BLi02282 PF08241 Methyltransferase domain BLi02284 PF02557 D-alanyl-D-alanine carboxypeptidase BLi02285 PF01048 Phosphorylase superfamily BLi02286 PF03773 Predicted permease BLi02288 PF14191 YodL-like BLi02289 PF01569 PAP2 superfamily BLi02290 PF14162 YozD-like protein BLi02292 PF06855 YozE SAM-like fold BLi02293 PF14122 YokU-like protein, putative antitoxin BLi02294 PF12544 Lysine-2,3-aminomutase BLi02295 PF00583 Acetyltransferase (GNAT) family BLi02296 PF07687 Peptidase dimerisation domain BLi02296 PF01546 Peptidase family M20/M25/M40 BLi02297 PF01144 Coenzyme A transferase BLi02298 PF01144 Coenzyme A transferase BLi02299 PF00202 Aminotransferase class-III BLi02301 PF00583 Acetyltransferase (GNAT) family BLi02302 PF01641 SelR domain BLi02303 PF01625 Peptide methionine sulfoxide reductase BLi02304 PF01047 MarR family BLi02306 PF00990 Diguanylate cyclase, GGDEF domain BLi02306 PF07694 5TMR of 5TMR-LYT BLi02307 PF01554 MatE BLi02309 PF17431 Uncharacterized YmpT-like BLi02310 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) BLi02311 PF13472 GDSL-like Lipase/Acylhydrolase family BLi02312 PF02630 SCO1/SenC BLi02313 PF02645 Uncharacterised protein, DegV family COG1307 BLi02314 PF10751 Protein of unknown function (DUF2535) BLi02315 PF00585 C-terminal regulatory domain of Threonine dehydratase BLi02315 PF00291 Pyridoxal-phosphate dependent enzyme BLi02316 PF08461 Ribonuclease R winged-helix domain BLi02316 PF00158 Sigma-54 interaction domain BLi02317 PF03006 Haemolysin-III related BLi02319 PF00186 Dihydrofolate reductase BLi02320 PF04608 Phosphatidylglycerophosphatase A BLi02321 PF14005 YpjP-like protein BLi02322 PF04445 Putative SAM-dependent methyltransferase BLi02323 PF06491 Disulphide isomerase BLi02324 PF00920 Dehydratase family BLi02325 PF08712 Scaffold protein Nfu/NifU N terminal BLi02325 PF13769 Virulence factor BLi02326 PF01966 HD domain BLi02327 PF00255 Glutathione peroxidase BLi02328 PF01268 Formate--tetrahydrofolate ligase BLi02329 PF04204 Homoserine O-succinyltransferase BLi02330 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BLi02330 PF00534 Glycosyl transferases group 1 BLi02332 PF00313 'Cold-shock' DNA-binding domain BLi02334 PF10819 Protein of unknown function (DUF2564) BLi02335 PF10782 Zinc-finger BLi02336 PF13456 Reverse transcriptase-like BLi02337 PF02592 Putative vitamin uptake transporter BLi02338 PF13456 Reverse transcriptase-like BLi02340 PF01367 5'-3' exonuclease, C-terminal SAM fold BLi02340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BLi02342 PF10752 Protein of unknown function (DUF2533) BLi02343 PF00350 Dynamin family BLi02344 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BLi02345 PF00195 Chalcone and stilbene synthases, N-terminal domain BLi02345 PF02797 Chalcone and stilbene synthases, C-terminal domain BLi02346 PF00583 Acetyltransferase (GNAT) family BLi02347 PF00860 Permease family BLi02348 PF00156 Phosphoribosyl transferase domain BLi02349 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BLi02350 PF13307 Helicase C-terminal domain BLi02353 PF01170 Putative RNA methylase family UPF0020 BLi02353 PF02926 THUMP domain BLi02354 PF05103 DivIVA protein BLi02355 PF06908 YspA SLOG family BLi02356 PF11122 Inner spore coat protein D BLi02357 PF13482 RNase_H superfamily BLi02358 PF00271 Helicase conserved C-terminal domain BLi02358 PF00270 DEAD/DEAH box helicase BLi02358 PF09369 Domain of unknown function (DUF1998) BLi02359 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BLi02361 PF14179 YppG-like protein BLi02362 PF14178 YppF-like protein BLi02363 PF08807 Bacterial domain of unknown function (DUF1798) BLi02365 PF10720 Protein of unknown function (DUF2515) BLi02366 PF03838 Recombination protein U BLi02367 PF00905 Penicillin binding protein transpeptidase domain BLi02367 PF00912 Transglycosylase BLi02369 PF00633 Helix-hairpin-helix motif BLi02369 PF00730 HhH-GPD superfamily base excision DNA repair protein BLi02369 PF10576 Iron-sulfur binding domain of endonuclease III BLi02370 PF07261 Replication initiation and membrane attachment BLi02371 PF00152 tRNA synthetases class II (D, K and N) BLi02371 PF01336 OB-fold nucleic acid binding domain BLi02372 PF00155 Aminotransferase class I and II BLi02373 PF03413 Peptidase propeptide and YPEB domain BLi02373 PF17881 Domain of unknown function (DUF5590) BLi02374 PF14084 Protein of unknown function (DUF4264) BLi02375 PF00929 Exonuclease BLi02375 PF13307 Helicase C-terminal domain BLi02375 PF04851 Type III restriction enzyme, res subunit BLi02376 PF02261 Aspartate decarboxylase BLi02377 PF02569 Pantoate-beta-alanine ligase BLi02378 PF02548 Ketopantoate hydroxymethyltransferase BLi02379 PF02237 Biotin protein ligase C terminal domain BLi02379 PF03099 Biotin/lipoate A/B protein ligase family BLi02379 PF08279 HTH domain BLi02380 PF12627 Probable RNA and SrmB- binding site of polymerase A BLi02380 PF01743 Poly A polymerase head domain BLi02380 PF13735 tRNA nucleotidyltransferase domain 2 putative BLi02381 PF00534 Glycosyl transferases group 1 BLi02381 PF13439 Glycosyltransferase Family 4 BLi02382 PF02585 GlcNAc-PI de-N-acetylase BLi02383 PF02142 MGS-like domain BLi02384 PF05173 Dihydrodipicolinate reductase, C-terminus BLi02384 PF01113 Dihydrodipicolinate reductase, N-terminus BLi02385 PF03819 MazG nucleotide pyrophosphohydrolase domain BLi02386 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BLi02386 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BLi02387 PF09577 Sporulation protein YpjB (SpoYpjB) BLi02388 PF07187 Protein of unknown function (DUF1405) BLi02389 PF00032 Cytochrome b(C-terminal)/b6/petD BLi02389 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BLi02390 PF00033 Cytochrome b/b6/petB BLi02391 PF00355 Rieske [2Fe-2S] domain BLi02392 PF10673 Protein of unknown function (DUF2487) BLi02393 PF08858 IDEAL domain BLi02393 PF08864 UPF0302 domain BLi02395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BLi02396 PF01842 ACT domain BLi02396 PF02153 Prephenate dehydrogenase BLi02397 PF00155 Aminotransferase class I and II BLi02398 PF00290 Tryptophan synthase alpha chain BLi02399 PF00291 Pyridoxal-phosphate dependent enzyme BLi02400 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BLi02401 PF00218 Indole-3-glycerol phosphate synthase BLi02402 PF02885 Glycosyl transferase family, helical bundle domain BLi02402 PF00591 Glycosyl transferase family, a/b domain BLi02403 PF00425 chorismate binding enzyme BLi02403 PF04715 Anthranilate synthase component I, N terminal region BLi02404 PF07736 Chorismate mutase type I BLi02405 PF01761 3-dehydroquinate synthase BLi02406 PF01264 Chorismate synthase BLi02407 PF01739 CheR methyltransferase, SAM binding domain BLi02407 PF03705 CheR methyltransferase, all-alpha domain BLi02408 PF00334 Nucleoside diphosphate kinase BLi02409 PF00348 Polyprenyl synthetase BLi02410 PF01209 ubiE/COQ5 methyltransferase family BLi02411 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BLi02412 PF02081 Tryptophan RNA-binding attenuator protein BLi02413 PF01227 GTP cyclohydrolase I BLi02414 PF00216 Bacterial DNA-binding protein BLi02416 PF09547 Stage IV sporulation protein A (spore_IV_A) BLi02418 PF10966 Protein of unknown function (DUF2768) BLi02420 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BLi02420 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BLi02421 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BLi02421 PF01926 50S ribosome-binding GTPase BLi02423 PF14045 YIEGIA protein BLi02425 PF14140 YpzI-like protein BLi02426 PF01070 FMN-dependent dehydrogenase BLi02427 PF00575 S1 RNA binding domain BLi02428 PF02224 Cytidylate kinase BLi02429 PF17313 Family of unknown function (DUF5359) BLi02430 PF03413 Peptidase propeptide and YPEB domain BLi02430 PF14620 YpeB sporulation BLi02431 PF07486 Cell Wall Hydrolase BLi02431 PF01471 Putative peptidoglycan binding domain BLi02432 PF13367 PrsW family intramembrane metalloprotease BLi02433 PF00710 Asparaginase, N-terminal BLi02433 PF17763 Glutaminase/Asparaginase C-terminal domain BLi02435 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BLi02435 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BLi02436 PF05389 Negative regulator of genetic competence (MecA) BLi02437 PF00149 Calcineurin-like phosphoesterase BLi02438 PF10864 Protein of unknown function (DUF2663) BLi02439 PF01476 LysM domain BLi02440 PF02517 CPBP intramembrane metalloprotease BLi02441 PF00270 DEAD/DEAH box helicase BLi02441 PF00271 Helicase conserved C-terminal domain BLi02442 PF14493 Helix-turn-helix domain BLi02444 PF12822 ECF transporter, substrate-specific component BLi02446 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BLi02446 PF01842 ACT domain BLi02446 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BLi02447 PF01551 Peptidase family M23 BLi02447 PF01476 LysM domain BLi02449 PF04542 Sigma-70 region 2 BLi02449 PF08281 Sigma-70, region 4 BLi02450 PF03816 Cell envelope-related transcriptional attenuator domain BLi02451 PF01522 Polysaccharide deacetylase BLi02454 PF00512 His Kinase A (phospho-acceptor) domain BLi02454 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi02455 PF00072 Response regulator receiver domain BLi02455 PF00486 Transcriptional regulatory protein, C terminal BLi02456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi02456 PF00672 HAMP domain BLi02456 PF18698 Histidine kinase sensor domain BLi02456 PF00512 His Kinase A (phospho-acceptor) domain BLi02456 PF00989 PAS fold BLi02458 PF00072 Response regulator receiver domain BLi02458 PF00486 Transcriptional regulatory protein, C terminal BLi02459 PF01578 Cytochrome C assembly protein BLi02460 PF05140 ResB-like family BLi02461 PF00578 AhpC/TSA family BLi02462 PF01479 S4 domain BLi02462 PF00849 RNA pseudouridylate synthase BLi02463 PF07670 Nucleoside recognition BLi02464 PF07670 Nucleoside recognition BLi02465 PF07943 Penicillin-binding protein 5, C-terminal domain BLi02465 PF00768 D-alanyl-D-alanine carboxypeptidase BLi02466 PF13047 Protein of unknown function (DUF3907) BLi02467 PF04079 Segregation and condensation complex subunit ScpB BLi02468 PF02616 Segregation and condensation protein ScpA BLi02470 PF03745 Domain of unknown function (DUF309) BLi02471 PF00583 Acetyltransferase (GNAT) family BLi02472 PF00885 6,7-dimethyl-8-ribityllumazine synthase BLi02473 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BLi02473 PF00925 GTP cyclohydrolase II BLi02474 PF00677 Lumazine binding domain BLi02475 PF01872 RibD C-terminal domain BLi02475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BLi02477 PF00149 Calcineurin-like phosphoesterase BLi02478 PF00011 Hsp20/alpha crystallin family BLi02480 PF18801 response regulator aspartate phosphatase H, N terminal BLi02481 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BLi02482 PF06207 Protein of unknown function (DUF1002) BLi02484 PF13276 HTH-like domain BLi02484 PF00665 Integrase core domain BLi02484 PF13333 Integrase core domain BLi02485 PF05908 Poly-gamma-glutamate hydrolase BLi02486 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BLi02486 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BLi02488 PF03323 Bacillus/Clostridium GerA spore germination protein BLi02489 PF14097 Stage V sporulation protein AE1 BLi02490 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BLi02491 PF07451 Stage V sporulation protein AD (SpoVAD) BLi02492 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BLi02493 PF13782 Stage V sporulation protein AB BLi02494 PF12164 Stage V sporulation protein AA BLi02495 PF04542 Sigma-70 region 2 BLi02495 PF04539 Sigma-70 region 3 BLi02495 PF04545 Sigma-70, region 4 BLi02496 PF13581 Histidine kinase-like ATPase domain BLi02497 PF01740 STAS domain BLi02498 PF00768 D-alanyl-D-alanine carboxypeptidase BLi02498 PF07943 Penicillin-binding protein 5, C-terminal domain BLi02499 PF01048 Phosphorylase superfamily BLi02500 PF01676 Metalloenzyme superfamily BLi02501 PF00589 Phage integrase family BLi02501 PF02899 Phage integrase, N-terminal SAM-like domain BLi02502 PF14004 Protein of unknown function (DUF4227) BLi02503 PF01475 Ferric uptake regulator family BLi02504 PF01944 Stage II sporulation protein M BLi02505 PF02378 Phosphotransferase system, EIIC BLi02506 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi02510 PF13673 Acetyltransferase (GNAT) domain BLi02512 PF00293 NUDIX domain BLi02513 PF13072 Mother cell inhibitor of FtsZ BLi02514 PF00440 Bacterial regulatory proteins, tetR family BLi02515 PF13564 DoxX-like family BLi02516 PF00248 Aldo/keto reductase family BLi02519 PF12146 Serine aminopeptidase, S33 BLi02520 PF10827 Protein of unknown function (DUF2552) BLi02521 PF01521 Iron-sulphur cluster biosynthesis BLi02523 PF13673 Acetyltransferase (GNAT) domain BLi02523 PF04229 GrpB protein BLi02524 PF03992 Antibiotic biosynthesis monooxygenase BLi02525 PF01674 Lipase (class 2) BLi02527 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BLi02528 PF00528 Binding-protein-dependent transport system inner membrane component BLi02529 PF00528 Binding-protein-dependent transport system inner membrane component BLi02530 PF00005 ABC transporter BLi02531 PF00005 ABC transporter BLi02531 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi02532 PF01554 MatE BLi02535 PF08863 YolD-like protein BLi02536 PF11799 impB/mucB/samB family C-terminal domain BLi02536 PF11798 IMS family HHH motif BLi02536 PF00817 impB/mucB/samB family BLi02537 PF14164 YqzH-like protein BLi02538 PF07690 Major Facilitator Superfamily BLi02540 PF00485 Phosphoribulokinase / Uridine kinase family BLi02542 PF00005 ABC transporter BLi02546 PF05908 Poly-gamma-glutamate hydrolase BLi02547 PF00106 short chain dehydrogenase BLi02548 PF00753 Metallo-beta-lactamase superfamily BLi02549 PF03807 NADP oxidoreductase coenzyme F420-dependent BLi02549 PF14748 Pyrroline-5-carboxylate reductase dimerisation BLi02550 PF01546 Peptidase family M20/M25/M40 BLi02551 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BLi02552 PF12146 Serine aminopeptidase, S33 BLi02553 PF00471 Ribosomal protein L33 BLi02554 PF00753 Metallo-beta-lactamase superfamily BLi02554 PF12706 Beta-lactamase superfamily domain BLi02555 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BLi02555 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BLi02558 PF16868 NMT1-like family BLi02559 PF00392 Bacterial regulatory proteins, gntR family BLi02559 PF07702 UTRA domain BLi02560 PF00232 Glycosyl hydrolase family 1 BLi02563 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BLi02564 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi02565 PF00245 Alkaline phosphatase BLi02567 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BLi02567 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BLi02568 PF00817 impB/mucB/samB family BLi02568 PF11799 impB/mucB/samB family C-terminal domain BLi02568 PF11798 IMS family HHH motif BLi02570 PF02096 60Kd inner membrane protein BLi02571 PF07687 Peptidase dimerisation domain BLi02571 PF01546 Peptidase family M20/M25/M40 BLi02572 PF01039 Carboxyl transferase domain BLi02573 PF06081 Aromatic acid exporter family member 1 BLi02573 PF11728 Putative aromatic acid exporter C-terminal domain BLi02574 PF00005 ABC transporter BLi02575 PF00528 Binding-protein-dependent transport system inner membrane component BLi02578 PF06491 Disulphide isomerase BLi02579 PF00781 Diacylglycerol kinase catalytic domain BLi02580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BLi02580 PF00364 Biotin-requiring enzyme BLi02580 PF02817 e3 binding domain BLi02581 PF02779 Transketolase, pyrimidine binding domain BLi02581 PF02780 Transketolase, C-terminal domain BLi02582 PF00676 Dehydrogenase E1 component BLi02583 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi02583 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BLi02584 PF00871 Acetokinase family BLi02585 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BLi02585 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BLi02586 PF01515 Phosphate acetyl/butaryl transferase BLi02587 PF00158 Sigma-54 interaction domain BLi02587 PF00989 PAS fold BLi02587 PF02954 Bacterial regulatory protein, Fis family BLi02588 PF11118 Protein of unknown function (DUF2627) BLi02589 PF03009 Glycerophosphoryl diester phosphodiesterase family BLi02590 PF01520 N-acetylmuramoyl-L-alanine amidase BLi02592 PF06426 Serine acetyltransferase, N-terminal BLi02592 PF00132 Bacterial transferase hexapeptide (six repeats) BLi02593 PF00072 Response regulator receiver domain BLi02593 PF08769 Sporulation initiation factor Spo0A C terminal BLi02594 PF17820 PDZ domain BLi02594 PF05580 SpoIVB peptidase S55 BLi02595 PF13476 AAA domain BLi02596 PF02863 Arginine repressor, C-terminal domain BLi02596 PF01316 Arginine repressor, DNA binding domain BLi02597 PF01479 S4 domain BLi02597 PF01728 FtsJ-like methyltransferase BLi02598 PF02779 Transketolase, pyrimidine binding domain BLi02598 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BLi02598 PF02780 Transketolase, C-terminal domain BLi02599 PF00348 Polyprenyl synthetase BLi02600 PF02609 Exonuclease VII small subunit BLi02601 PF13742 OB-fold nucleic acid binding domain BLi02601 PF02601 Exonuclease VII, large subunit BLi02602 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BLi02602 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BLi02603 PF01029 NusB family BLi02604 PF03780 Asp23 family, cell envelope-related function BLi02605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BLi02605 PF02785 Biotin carboxylase C-terminal domain BLi02605 PF00289 Biotin carboxylase, N-terminal domain BLi02606 PF00364 Biotin-requiring enzyme BLi02607 PF12685 SpoIIIAH-like protein BLi02609 PF09581 Stage III sporulation protein AF (Spore_III_AF) BLi02610 PF09546 Stage III sporulation protein AE (spore_III_AE) BLi02611 PF06686 Stage III sporulation protein AC/AD protein family BLi02612 PF06686 Stage III sporulation protein AC/AD protein family BLi02613 PF09548 Stage III sporulation protein AB (spore_III_AB) BLi02615 PF10942 Protein of unknown function (DUF2619) BLi02616 PF09285 Elongation factor P, C-terminal BLi02616 PF08207 Elongation factor P (EF-P) KOW-like domain BLi02616 PF01132 Elongation factor P (EF-P) OB domain BLi02617 PF00557 Metallopeptidase family M24 BLi02617 PF01321 Creatinase/Prolidase N-terminal domain BLi02618 PF01220 Dehydroquinase class II BLi02619 PF11085 Conserved membrane protein YqhR BLi02620 PF07136 Protein of unknown function (DUF1385) BLi02622 PF01734 Patatin-like phospholipase BLi02623 PF01325 Iron dependent repressor, N-terminal DNA binding domain BLi02623 PF02742 Iron dependent repressor, metal binding and dimerisation domain BLi02624 PF03099 Biotin/lipoate A/B protein ligase family BLi02625 PF00581 Rhodanese-like domain BLi02626 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BLi02627 PF00528 Binding-protein-dependent transport system inner membrane component BLi02628 PF00005 ABC transporter BLi02628 PF00571 CBS domain BLi02629 PF02347 Glycine cleavage system P-protein BLi02630 PF02347 Glycine cleavage system P-protein BLi02631 PF08669 Glycine cleavage T-protein C-terminal barrel domain BLi02631 PF01571 Aminomethyltransferase folate-binding domain BLi02633 PF00271 Helicase conserved C-terminal domain BLi02633 PF00176 SNF2 family N-terminal domain BLi02634 PF11079 Bacterial protein YqhG of unknown function BLi02635 PF08671 Anti-repressor SinI BLi02636 PF08671 Anti-repressor SinI BLi02636 PF01381 Helix-turn-helix BLi02637 PF12389 Camelysin metallo-endopeptidase BLi02640 PF13028 Protein of unknown function (DUF3889) BLi02641 PF14038 YqzE-like protein BLi02643 PF15980 Putative Competence protein ComGF BLi02645 PF07963 Prokaryotic N-terminal methylation motif BLi02646 PF07963 Prokaryotic N-terminal methylation motif BLi02647 PF00482 Type II secretion system (T2SS), protein F BLi02648 PF00437 Type II/IV secretion system protein BLi02649 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BLi02649 PF01740 STAS domain BLi02651 PF03960 ArsC family BLi02652 PF11117 Protein of unknown function (DUF2626) BLi02653 PF00753 Metallo-beta-lactamase superfamily BLi02654 PF10958 Protein of unknown function (DUF2759) BLi02655 PF01910 Thiamine-binding protein BLi02657 PF00246 Zinc carboxypeptidase BLi02658 PF01497 Periplasmic binding protein BLi02659 PF00884 Sulfatase BLi02660 PF00480 ROK family BLi02661 PF06014 Bacterial protein of unknown function (DUF910) BLi02663 PF03323 Bacillus/Clostridium GerA spore germination protein BLi02664 PF01694 Rhomboid family BLi02666 PF01812 5-formyltetrahydrofolate cyclo-ligase family BLi02667 PF00471 Ribosomal protein L33 BLi02668 PF00534 Glycosyl transferases group 1 BLi02668 PF13439 Glycosyltransferase Family 4 BLi02672 PF00005 ABC transporter BLi02673 PF00005 ABC transporter BLi02674 PF00528 Binding-protein-dependent transport system inner membrane component BLi02675 PF00528 Binding-protein-dependent transport system inner membrane component BLi02676 PF12849 PBP superfamily domain BLi02678 PF07690 Major Facilitator Superfamily BLi02679 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BLi02679 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BLi02680 PF04306 Protein of unknown function (DUF456) BLi02681 PF06691 Protein of unknown function (DUF1189) BLi02683 PF04551 GcpE protein BLi02686 PF01475 Ferric uptake regulator family BLi02687 PF00950 ABC 3 transport family BLi02688 PF00005 ABC transporter BLi02690 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BLi02690 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BLi02691 PF11116 Protein of unknown function (DUF2624) BLi02692 PF01261 Xylose isomerase-like TIM barrel BLi02693 PF00271 Helicase conserved C-terminal domain BLi02693 PF00270 DEAD/DEAH box helicase BLi02695 PF02401 LytB protein BLi02696 PF01784 NIF3 (NGG1p interacting factor 3) BLi02697 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BLi02707 PF04740 LXG domain of WXG superfamily BLi02707 PF14449 Pre-toxin TG BLi02707 PF14431 YwqJ-like deaminase BLi02710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BLi02712 PF04539 Sigma-70 region 3 BLi02712 PF04545 Sigma-70, region 4 BLi02712 PF04542 Sigma-70 region 2 BLi02712 PF00140 Sigma-70 factor, region 1.2 BLi02712 PF03979 Sigma-70 factor, region 1.1 BLi02713 PF10410 DnaB-helicase binding domain of primase BLi02713 PF01807 CHC2 zinc finger BLi02713 PF08275 DNA primase catalytic core, N-terminal domain BLi02714 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BLi02715 PF03618 Kinase/pyrophosphorylase BLi02716 PF00571 CBS domain BLi02716 PF08279 HTH domain BLi02717 PF02092 Glycyl-tRNA synthetase beta subunit BLi02718 PF02091 Glycyl-tRNA synthetase alpha subunit BLi02719 PF11967 Recombination protein O N terminal BLi02719 PF02565 Recombination protein O C terminal BLi02720 PF07650 KH domain BLi02720 PF01926 50S ribosome-binding GTPase BLi02721 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BLi02722 PF01219 Prokaryotic diacylglycerol kinase BLi02723 PF02130 Uncharacterized protein family UPF0054 BLi02724 PF07697 7TM-HD extracellular BLi02724 PF07698 7TM receptor with intracellular HD hydrolase BLi02724 PF01966 HD domain BLi02725 PF02562 PhoH-like protein BLi02726 PF06898 Putative stage IV sporulation protein YqfD BLi02727 PF07873 YabP family BLi02729 PF12127 SigmaW regulon antibacterial BLi02730 PF01957 NfeD-like C-terminal, partner-binding BLi02730 PF01972 Serine dehydrogenase proteinase BLi02731 PF09424 Yqey-like protein BLi02732 PF01165 Ribosomal protein S21 BLi02733 PF02690 Na+/Pi-cotransporter BLi02734 PF01791 DeoC/LacD family aldolase BLi02735 PF04055 Radical SAM superfamily BLi02735 PF01938 TRAM domain BLi02735 PF00919 Uncharacterized protein family UPF0004 BLi02736 PF04452 RNA methyltransferase BLi02738 PF01556 DnaJ C terminal domain BLi02738 PF00226 DnaJ domain BLi02738 PF00684 DnaJ central domain BLi02739 PF00012 Hsp70 protein BLi02740 PF01025 GrpE BLi02741 PF01628 HrcA protein C terminal domain BLi02742 PF06969 HemN C-terminal domain BLi02742 PF04055 Radical SAM superfamily BLi02743 PF00679 Elongation factor G C-terminus BLi02743 PF00009 Elongation factor Tu GTP binding domain BLi02743 PF03144 Elongation factor Tu domain 2 BLi02743 PF06421 GTP-binding protein LepA C-terminus BLi02744 PF12438 Protein of unknown function (DUF3679) BLi02745 PF07454 Stage II sporulation protein P (SpoIIP) BLi02746 PF03418 Germination protease BLi02747 PF01649 Ribosomal protein S20 BLi02748 PF06144 DNA polymerase III, delta subunit BLi02749 PF14141 YqzM-like protein BLi02750 PF13567 Domain of unknown function (DUF4131) BLi02750 PF00753 Metallo-beta-lactamase superfamily BLi02750 PF03772 Competence protein BLi02751 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BLi02752 PF10531 SLBB domain BLi02753 PF14748 Pyrroline-5-carboxylate reductase dimerisation BLi02753 PF03807 NADP oxidoreductase coenzyme F420-dependent BLi02754 PF13649 Methyltransferase domain BLi02756 PF01966 HD domain BLi02757 PF01467 Cytidylyltransferase-like BLi02758 PF01985 CRS1 / YhbY (CRM) domain BLi02759 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BLi02759 PF01488 Shikimate / quinate 5-dehydrogenase BLi02759 PF08501 Shikimate dehydrogenase substrate binding domain BLi02760 PF01926 50S ribosome-binding GTPase BLi02762 PF08970 Sporulation inhibitor A BLi02763 PF00657 GDSL-like Lipase/Acylhydrolase BLi02764 PF12746 GNAT acetyltransferase BLi02765 PF10057 Uncharacterized conserved protein (DUF2294) BLi02766 PF01568 Molydopterin dinucleotide binding domain BLi02766 PF00037 4Fe-4S binding domain BLi02766 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BLi02766 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BLi02766 PF00384 Molybdopterin oxidoreductase BLi02767 PF07849 Protein of unknown function (DUF1641) BLi02769 PF04542 Sigma-70 region 2 BLi02769 PF04545 Sigma-70, region 4 BLi02771 PF00583 Acetyltransferase (GNAT) family BLi02774 PF01411 tRNA synthetases class II (A) BLi02774 PF02272 DHHA1 domain BLi02774 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BLi02776 PF01042 Endoribonuclease L-PSP BLi02779 PF00291 Pyridoxal-phosphate dependent enzyme BLi02780 PF01042 Endoribonuclease L-PSP BLi02782 PF04545 Sigma-70, region 4 BLi02782 PF04542 Sigma-70 region 2 BLi02784 PF06445 GyrI-like small molecule binding domain BLi02784 PF13411 MerR HTH family regulatory protein BLi02785 PF00753 Metallo-beta-lactamase superfamily BLi02787 PF00196 Bacterial regulatory proteins, luxR family BLi02787 PF00072 Response regulator receiver domain BLi02788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi02788 PF07730 Histidine kinase BLi02789 PF00085 Thioredoxin BLi02790 PF01925 Sulfite exporter TauE/SafE BLi02791 PF01206 Sulfurtransferase TusA BLi02792 PF00581 Rhodanese-like domain BLi02792 PF00753 Metallo-beta-lactamase superfamily BLi02793 PF01206 Sulfurtransferase TusA BLi02793 PF00581 Rhodanese-like domain BLi02794 PF13686 DsrE/DsrF/DrsH-like family BLi02795 PF02583 Metal-sensitive transcriptional repressor BLi02802 PF01809 Putative membrane protein insertion efficiency factor BLi02803 PF00490 Delta-aminolevulinic acid dehydratase BLi02804 PF01380 SIS domain BLi02805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BLi02806 PF01638 HxlR-like helix-turn-helix BLi02807 PF00487 Fatty acid desaturase BLi02808 PF07730 Histidine kinase BLi02809 PF00196 Bacterial regulatory proteins, luxR family BLi02809 PF00072 Response regulator receiver domain BLi02810 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi02811 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BLi02812 PF00528 Binding-protein-dependent transport system inner membrane component BLi02814 PF00005 ABC transporter BLi02814 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi02815 PF00005 ABC transporter BLi02815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BLi02818 PF12833 Helix-turn-helix domain BLi02818 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BLi02819 PF00106 short chain dehydrogenase BLi02822 PF00067 Cytochrome P450 BLi02823 PF01925 Sulfite exporter TauE/SafE BLi02826 PF00106 short chain dehydrogenase BLi02827 PF00251 Glycosyl hydrolases family 32 N-terminal domain BLi02827 PF08244 Glycosyl hydrolases family 32 C terminal BLi02828 PF03613 PTS system mannose/fructose/sorbose family IID component BLi02829 PF03609 PTS system sorbose-specific iic component BLi02830 PF03830 PTS system sorbose subfamily IIB component BLi02831 PF03610 PTS system fructose IIA component BLi02832 PF00874 PRD domain BLi02832 PF03610 PTS system fructose IIA component BLi02832 PF00158 Sigma-54 interaction domain BLi02834 PF14145 YrhK-like protein BLi02835 PF00302 Chloramphenicol acetyltransferase BLi02836 PF12833 Helix-turn-helix domain BLi02836 PF02805 Metal binding domain of Ada BLi02837 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BLi02837 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BLi02838 PF00248 Aldo/keto reductase family BLi02839 PF07690 Major Facilitator Superfamily BLi02840 PF01638 HxlR-like helix-turn-helix BLi02841 PF03575 Peptidase family S51 BLi02842 PF02602 Uroporphyrinogen-III synthase HemD BLi02844 PF01497 Periplasmic binding protein BLi02845 PF03466 LysR substrate binding domain BLi02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi02846 PF07690 Major Facilitator Superfamily BLi02848 PF00175 Oxidoreductase NAD-binding domain BLi02848 PF00067 Cytochrome P450 BLi02848 PF00667 FAD binding domain BLi02848 PF00258 Flavodoxin BLi02849 PF00440 Bacterial regulatory proteins, tetR family BLi02849 PF16295 Tetracyclin repressor-like, C-terminal domain BLi02850 PF17936 Bacterial Ig domain BLi02850 PF00082 Subtilase family BLi02851 PF08241 Methyltransferase domain BLi02852 PF14143 YrhC-like protein BLi02853 PF01053 Cys/Met metabolism PLP-dependent enzyme BLi02854 PF00291 Pyridoxal-phosphate dependent enzyme BLi02855 PF01048 Phosphorylase superfamily BLi02856 PF13649 Methyltransferase domain BLi02857 PF10750 Protein of unknown function (DUF2536) BLi02858 PF07423 Domain of unknown function (DUF1510) BLi02859 PF00905 Penicillin binding protein transpeptidase domain BLi02859 PF03717 Penicillin-binding Protein dimerisation domain BLi02860 PF03449 Transcription elongation factor, N-terminal BLi02860 PF01272 Transcription elongation factor, GreA/GreB, C-term BLi02861 PF00485 Phosphoribulokinase / Uridine kinase family BLi02865 PF02618 YceG-like family BLi02866 PF06949 Protein of unknown function (DUF1292) BLi02867 PF03652 Holliday junction resolvase BLi02868 PF06135 IreB regulatory phosphoprotein BLi02869 PF02272 DHHA1 domain BLi02869 PF01411 tRNA synthetases class II (A) BLi02869 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BLi02870 PF01594 AI-2E family transporter BLi02872 PF05239 PRC-barrel domain BLi02873 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BLi02873 PF14490 Helix-hairpin-helix containing domain BLi02873 PF13538 UvrD-like helicase C-terminal domain BLi02874 PF07719 Tetratricopeptide repeat BLi02874 PF13181 Tetratricopeptide repeat BLi02876 PF00266 Aminotransferase class-V BLi02877 PF02082 Transcriptional regulator BLi02878 PF16193 AAA C-terminal domain BLi02878 PF05496 Holliday junction DNA helicase RuvB P-loop domain BLi02878 PF12002 MgsA AAA+ ATPase C terminal BLi02879 PF00899 ThiF family BLi02881 PF02938 GAD domain BLi02881 PF00152 tRNA synthetases class II (D, K and N) BLi02881 PF01336 OB-fold nucleic acid binding domain BLi02882 PF03129 Anticodon binding domain BLi02882 PF13393 Histidyl-tRNA synthetase BLi02884 PF08239 Bacterial SH3 domain BLi02884 PF01520 N-acetylmuramoyl-L-alanine amidase BLi02886 PF02580 D-Tyr-tRNA(Tyr) deacylase BLi02887 PF02824 TGS domain BLi02887 PF04607 Region found in RelA / SpoT proteins BLi02887 PF13291 ACT domain BLi02888 PF00156 Phosphoribosyl transferase domain BLi02889 PF02272 DHHA1 domain BLi02889 PF01368 DHH family BLi02889 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BLi02889 PF17768 RecJ OB domain BLi02890 PF06305 Lipopolysaccharide assembly protein A domain BLi02891 PF02355 Protein export membrane protein BLi02891 PF07549 SecD/SecF GG Motif BLi02892 PF13797 Post-transcriptional regulator BLi02893 PF14667 Polysaccharide biosynthesis C-terminal domain BLi02893 PF01943 Polysaccharide biosynthesis protein BLi02894 PF04239 Protein of unknown function (DUF421) BLi02895 PF12670 Protein of unknown function (DUF3792) BLi02896 PF02699 Preprotein translocase subunit BLi02897 PF01702 Queuine tRNA-ribosyltransferase BLi02898 PF02547 Queuosine biosynthesis protein BLi02899 PF11146 Protein of unknown function (DUF2905) BLi02900 PF05496 Holliday junction DNA helicase RuvB P-loop domain BLi02900 PF05491 RuvB C-terminal winged helix domain BLi02900 PF17864 RuvB AAA lid domain BLi02901 PF01330 RuvA N terminal domain BLi02901 PF07499 RuvA, C-terminal domain BLi02902 PF08955 BofC C-terminal domain BLi02902 PF08977 Bypass of Forespore C, N terminal BLi02904 PF08141 Small acid-soluble spore protein H family BLi02905 PF05163 DinB family BLi02906 PF05908 Poly-gamma-glutamate hydrolase BLi02909 PF01709 Transcriptional regulator BLi02910 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BLi02911 PF01476 LysM domain BLi02912 PF02445 Quinolinate synthetase A protein BLi02913 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BLi02913 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BLi02914 PF02910 Fumarate reductase flavoprotein C-term BLi02914 PF00890 FAD binding domain BLi02915 PF00266 Aminotransferase class-V BLi02916 PF08279 HTH domain BLi02916 PF02829 3H domain BLi02917 PF01842 ACT domain BLi02917 PF00800 Prephenate dehydratase BLi02918 PF01842 ACT domain BLi02919 PF09269 Domain of unknown function (DUF1967) BLi02919 PF01926 50S ribosome-binding GTPase BLi02919 PF01018 GTP1/OBG BLi02920 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BLi02920 PF14682 Sporulation initiation phospho-transferase B, C-terminal BLi02921 PF01016 Ribosomal L27 protein BLi02922 PF04327 Cysteine protease Prp BLi02923 PF00829 Ribosomal prokaryotic L21 protein BLi02924 PF02163 Peptidase family M50 BLi02925 PF01551 Peptidase family M23 BLi02926 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BLi02927 PF01022 Bacterial regulatory protein, arsR family BLi02928 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BLi02929 PF03775 Septum formation inhibitor MinC, C-terminal domain BLi02930 PF04093 rod shape-determining protein MreD BLi02931 PF04085 rod shape-determining protein MreC BLi02933 PF04002 RadC-like JAB domain BLi02934 PF02545 Maf-like protein BLi02935 PF05036 Sporulation related domain BLi02936 PF01478 Type IV leader peptidase family BLi02936 PF06750 Bacterial Peptidase A24 N-terminal domain BLi02937 PF08245 Mur ligase middle domain BLi02937 PF02875 Mur ligase family, glutamate ligase domain BLi02938 PF00133 tRNA synthetases class I (I, L, M and V) BLi02938 PF10458 Valyl tRNA synthetase tRNA binding arm BLi02938 PF08264 Anticodon-binding domain of tRNA BLi02941 PF01476 LysM domain BLi02942 PF00202 Aminotransferase class-III BLi02943 PF00490 Delta-aminolevulinic acid dehydratase BLi02944 PF02602 Uroporphyrinogen-III synthase HemD BLi02945 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BLi02945 PF03900 Porphobilinogen deaminase, C-terminal domain BLi02946 PF01578 Cytochrome C assembly protein BLi02947 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BLi02947 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BLi02947 PF01488 Shikimate / quinate 5-dehydrogenase BLi02949 PF01926 50S ribosome-binding GTPase BLi02950 PF00004 ATPase family associated with various cellular activities (AAA) BLi02950 PF05362 Lon protease (S16) C-terminal proteolytic domain BLi02950 PF02190 ATP-dependent protease La (LON) substrate-binding domain BLi02951 PF00004 ATPase family associated with various cellular activities (AAA) BLi02951 PF05362 Lon protease (S16) C-terminal proteolytic domain BLi02952 PF07724 AAA domain (Cdc48 subfamily) BLi02952 PF10431 C-terminal, D2-small domain, of ClpB protein BLi02952 PF06689 ClpX C4-type zinc finger BLi02953 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BLi02953 PF05698 Bacterial trigger factor protein (TF) C-terminus BLi02953 PF05697 Bacterial trigger factor protein (TF) BLi02955 PF00694 Aconitase C-terminal domain BLi02956 PF00330 Aconitase family (aconitate hydratase) BLi02957 PF00180 Isocitrate/isopropylmalate dehydrogenase BLi02958 PF08502 LeuA allosteric (dimerisation) domain BLi02958 PF00682 HMGL-like BLi02959 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BLi02959 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BLi02960 PF10369 Small subunit of acetolactate synthase BLi02960 PF01842 ACT domain BLi02961 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BLi02961 PF00205 Thiamine pyrophosphate enzyme, central domain BLi02961 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BLi02962 PF01063 Amino-transferase class IV BLi02964 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BLi02964 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BLi02967 PF04860 Phage portal protein BLi02968 PF17288 Terminase RNAseH like domain BLi02968 PF04466 Phage terminase large subunit BLi02974 PF00145 C-5 cytosine-specific DNA methylase BLi02974 PF01381 Helix-turn-helix BLi02976 PF04634 Protein of unknown function, DUF600 BLi02977 PF04740 LXG domain of WXG superfamily BLi02978 PF18801 response regulator aspartate phosphatase H, N terminal BLi02983 PF12850 Calcineurin-like phosphoesterase superfamily domain BLi02984 PF01725 Ham1 family BLi02985 PF03725 3' exoribonuclease family, domain 2 BLi02985 PF01138 3' exoribonuclease family, domain 1 BLi02986 PF10646 Sporulation and spore germination BLi02987 PF01177 Asp/Glu/Hydantoin racemase BLi02988 PF01047 MarR family BLi02989 PF00196 Bacterial regulatory proteins, luxR family BLi02990 PF00106 short chain dehydrogenase BLi02991 PF03061 Thioesterase superfamily BLi02992 PF13085 2Fe-2S iron-sulfur cluster binding domain BLi02992 PF13183 4Fe-4S dicluster domain BLi02993 PF02910 Fumarate reductase flavoprotein C-term BLi02993 PF00890 FAD binding domain BLi02994 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BLi02995 PF10702 Protein of unknown function (DUF2507) BLi02996 PF00696 Amino acid kinase family BLi02996 PF01842 ACT domain BLi02996 PF13840 ACT domain BLi02997 PF08459 UvrC Helix-hairpin-helix N-terminal BLi02997 PF02151 UvrB/uvrC motif BLi02997 PF01541 GIY-YIG catalytic domain BLi02998 PF00085 Thioredoxin BLi02999 PF00766 Electron transfer flavoprotein FAD-binding domain BLi02999 PF01012 Electron transfer flavoprotein domain BLi03000 PF01012 Electron transfer flavoprotein domain BLi03001 PF00378 Enoyl-CoA hydratase/isomerase BLi03002 PF08359 YsiA-like protein, C-terminal region BLi03002 PF00440 Bacterial regulatory proteins, tetR family BLi03003 PF00501 AMP-binding enzyme BLi03003 PF13193 AMP-binding enzyme C-terminal domain BLi03004 PF03994 Domain of Unknown Function (DUF350) BLi03005 PF00488 MutS domain V BLi03005 PF01713 Smr domain BLi03006 PF14716 Helix-hairpin-helix domain BLi03006 PF14791 DNA polymerase beta thumb BLi03006 PF02811 PHP domain BLi03007 PF02674 Colicin V production protein BLi03008 PF05164 Cell division protein ZapA BLi03009 PF11858 Domain of unknown function (DUF3378) BLi03009 PF01351 Ribonuclease HII BLi03013 PF00005 ABC transporter BLi03013 PF12399 Branched-chain amino acid ATP-binding cassette transporter BLi03015 PF03484 tRNA synthetase B5 domain BLi03015 PF03147 Ferredoxin-fold anticodon binding domain BLi03015 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BLi03015 PF03483 B3/4 domain BLi03015 PF01588 Putative tRNA binding domain BLi03016 PF01409 tRNA synthetases class II core domain (F) BLi03016 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BLi03017 PF00588 SpoU rRNA Methylase family BLi03017 PF08032 RNA 2'-O ribose methyltransferase substrate binding BLi03018 PF14098 Small, acid-soluble spore protein I BLi03019 PF02554 Carbon starvation protein CstA BLi03019 PF13722 5TM C-terminal transporter carbon starvation CstA BLi03021 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BLi03022 PF00528 Binding-protein-dependent transport system inner membrane component BLi03023 PF00528 Binding-protein-dependent transport system inner membrane component BLi03024 PF01547 Bacterial extracellular solute-binding protein BLi03025 PF13685 Iron-containing alcohol dehydrogenase BLi03026 PF00596 Class II Aldolase and Adducin N-terminal domain BLi03027 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BLi03027 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BLi03028 PF02610 L-arabinose isomerase BLi03028 PF11762 L-arabinose isomerase C-terminal domain BLi03029 PF04616 Glycosyl hydrolases family 43 BLi03030 PF05343 M42 glutamyl aminopeptidase BLi03032 PF06961 Protein of unknown function (DUF1294) BLi03033 PF00453 Ribosomal protein L20 BLi03034 PF01632 Ribosomal protein L35 BLi03035 PF00707 Translation initiation factor IF-3, C-terminal domain BLi03035 PF05198 Translation initiation factor IF-3, N-terminal domain BLi03036 PF04172 LrgB-like family BLi03037 PF03788 LrgA family BLi03038 PF09423 PhoD-like phosphatase BLi03038 PF16655 PhoD-like phosphatase, N-terminal domain BLi03039 PF00072 Response regulator receiver domain BLi03039 PF04397 LytTr DNA-binding domain BLi03040 PF06580 Histidine kinase BLi03040 PF07694 5TMR of 5TMR-LYT BLi03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi03043 PF03129 Anticodon binding domain BLi03043 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BLi03043 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BLi03043 PF02824 TGS domain BLi03044 PF08812 YtxC-like family BLi03045 PF09335 SNARE associated Golgi protein BLi03046 PF07319 Primosomal protein DnaI N-terminus BLi03046 PF01695 IstB-like ATP binding protein BLi03047 PF07261 Replication initiation and membrane attachment BLi03048 PF03477 ATP cone domain BLi03051 PF02675 S-adenosylmethionine decarboxylase BLi03052 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BLi03052 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BLi03053 PF00544 Pectate lyase BLi03054 PF01121 Dephospho-CoA kinase BLi03055 PF02659 Putative manganese efflux pump BLi03056 PF06827 Zinc finger found in FPG and IleRS BLi03056 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BLi03056 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BLi03057 PF00476 DNA polymerase family A BLi03057 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BLi03057 PF01367 5'-3' exonuclease, C-terminal SAM fold BLi03058 PF00512 His Kinase A (phospho-acceptor) domain BLi03058 PF16736 Single Cache-like BLi03058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi03058 PF00989 PAS fold BLi03059 PF00072 Response regulator receiver domain BLi03059 PF00486 Transcriptional regulatory protein, C terminal BLi03060 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BLi03060 PF00056 lactate/malate dehydrogenase, NAD binding domain BLi03061 PF00180 Isocitrate/isopropylmalate dehydrogenase BLi03062 PF00285 Citrate synthase, C-terminal domain BLi03063 PF04284 Protein of unknown function (DUF441) BLi03064 PF01594 AI-2E family transporter BLi03065 PF04186 FxsA cytoplasmic membrane protein BLi03067 PF00391 PEP-utilising enzyme, mobile domain BLi03067 PF02887 Pyruvate kinase, alpha/beta domain BLi03067 PF00224 Pyruvate kinase, barrel domain BLi03068 PF00365 Phosphofructokinase BLi03069 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BLi03070 PF17848 Acetyl-coA carboxylase zinc finger domain BLi03070 PF01039 Carboxyl transferase domain BLi03071 PF00390 Malic enzyme, N-terminal domain BLi03071 PF03949 Malic enzyme, NAD binding domain BLi03072 PF14579 Helix-hairpin-helix motif BLi03072 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BLi03072 PF02811 PHP domain BLi03072 PF07733 Bacterial DNA polymerase III alpha NTPase domain BLi03072 PF01336 OB-fold nucleic acid binding domain BLi03073 PF14034 Sporulation protein YtrH BLi03076 PF01368 DHH family BLi03076 PF02272 DHHA1 domain BLi03077 PF14007 YtpI-like protein BLi03078 PF00571 CBS domain BLi03078 PF07085 DRTGG domain BLi03078 PF00392 Bacterial regulatory proteins, gntR family BLi03078 PF03061 Thioesterase superfamily BLi03079 PF03551 Transcriptional regulator PadR-like family BLi03079 PF10400 Virulence activator alpha C-term BLi03083 PF00206 Lyase BLi03083 PF14698 Argininosuccinate lyase C-terminal BLi03084 PF00764 Arginosuccinate synthase BLi03085 PF00994 Probable molybdopterin binding domain BLi03086 PF00871 Acetokinase family BLi03087 PF02384 N-6 DNA Methylase BLi03088 PF08534 Redoxin BLi03089 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BLi03090 PF11167 Protein of unknown function (DUF2953) BLi03091 PF06271 RDD family BLi03092 PF01343 Peptidase family S49 BLi03093 PF01513 ATP-NAD kinase BLi03096 PF07690 Major Facilitator Superfamily BLi03098 PF13193 AMP-binding enzyme C-terminal domain BLi03098 PF00501 AMP-binding enzyme BLi03099 PF00269 Small, acid-soluble spore proteins, alpha/beta type BLi03100 PF02568 Thiamine biosynthesis protein (ThiI) BLi03100 PF02926 THUMP domain BLi03101 PF00266 Aminotransferase class-V BLi03102 PF05525 Branched-chain amino acid transport protein BLi03104 PF00665 Integrase core domain BLi03104 PF13276 HTH-like domain BLi03104 PF13333 Integrase core domain BLi03105 PF06160 Septation ring formation regulator, EzrA BLi03106 PF02811 PHP domain BLi03107 PF00440 Bacterial regulatory proteins, tetR family BLi03108 PF13185 GAF domain BLi03109 PF00990 Diguanylate cyclase, GGDEF domain BLi03111 PF01479 S4 domain BLi03111 PF00163 Ribosomal protein S4/S9 N-terminal domain BLi03114 PF05656 Protein of unknown function (DUF805) BLi03115 PF12706 Beta-lactamase superfamily domain BLi03116 PF01037 Lrp/AsnC ligand binding domain BLi03118 PF01479 S4 domain BLi03118 PF00579 tRNA synthetases class I (W and Y) BLi03119 PF13193 AMP-binding enzyme C-terminal domain BLi03119 PF00501 AMP-binding enzyme BLi03120 PF00583 Acetyltransferase (GNAT) family BLi03121 PF00571 CBS domain BLi03122 PF00850 Histone deacetylase domain BLi03123 PF00691 OmpA family BLi03123 PF13677 Membrane MotB of proton-channel complex MotA/MotB BLi03124 PF01618 MotA/TolQ/ExbB proton channel family BLi03125 PF00356 Bacterial regulatory proteins, lacI family BLi03126 PF01817 Chorismate mutase type II BLi03126 PF00793 DAHP synthetase I family BLi03128 PF11009 Protein of unknown function (DUF2847) BLi03129 PF12732 YtxH-like protein BLi03130 PF06103 Bacterial protein of unknown function (DUF948) BLi03131 PF01225 Mur ligase family, catalytic domain BLi03131 PF02875 Mur ligase family, glutamate ligase domain BLi03131 PF08245 Mur ligase middle domain BLi03132 PF01580 FtsK/SpoIIIE family BLi03132 PF09397 Ftsk gamma domain BLi03132 PF17854 FtsK alpha domain BLi03133 PF01588 Putative tRNA binding domain BLi03133 PF14794 Domain of unknown function (DUF4479) BLi03134 PF07285 Protein of unknown function (DUF1444) BLi03135 PF00085 Thioredoxin BLi03136 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ BLi03137 PF05343 M42 glutamyl aminopeptidase BLi03138 PF03413 Peptidase propeptide and YPEB domain BLi03139 PF03949 Malic enzyme, NAD binding domain BLi03139 PF00390 Malic enzyme, N-terminal domain BLi03140 PF00753 Metallo-beta-lactamase superfamily BLi03141 PF02390 Putative methyltransferase BLi03142 PF14165 YtzH-like protein BLi03143 PF01636 Phosphotransferase enzyme family BLi03144 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BLi03144 PF17999 Pullulanase N1-terminal domain BLi03144 PF00128 Alpha amylase, catalytic domain BLi03145 PF00781 Diacylglycerol kinase catalytic domain BLi03148 PF00291 Pyridoxal-phosphate dependent enzyme BLi03150 PF10903 Protein of unknown function (DUF2691) BLi03151 PF01546 Peptidase family M20/M25/M40 BLi03152 PF00860 Permease family BLi03153 PF08220 DeoR-like helix-turn-helix domain BLi03154 PF01479 S4 domain BLi03154 PF00849 RNA pseudouridylate synthase BLi03155 PF14667 Polysaccharide biosynthesis C-terminal domain BLi03155 PF01943 Polysaccharide biosynthesis protein BLi03157 PF02028 BCCT, betaine/carnitine/choline family transporter BLi03158 PF10957 Sporulation protein Cse60 BLi03159 PF00581 Rhodanese-like domain BLi03160 PF18801 response regulator aspartate phosphatase H, N terminal BLi03162 PF04854 Protein of unknown function, DUF624 BLi03163 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BLi03163 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BLi03165 PF07470 Glycosyl Hydrolase Family 88 BLi03166 PF00528 Binding-protein-dependent transport system inner membrane component BLi03167 PF12833 Helix-turn-helix domain BLi03167 PF17853 GGDEF-like domain BLi03168 PF13416 Bacterial extracellular solute-binding protein BLi03169 PF00528 Binding-protein-dependent transport system inner membrane component BLi03170 PF01370 NAD dependent epimerase/dehydratase family BLi03171 PF01738 Dienelactone hydrolase family BLi03173 PF03466 LysR substrate binding domain BLi03173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi03174 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi03175 PF09334 tRNA synthetases class I (M) BLi03175 PF00133 tRNA synthetases class I (I, L, M and V) BLi03175 PF13603 Leucyl-tRNA synthetase, Domain 2 BLi03175 PF08264 Anticodon-binding domain of tRNA BLi03176 PF14074 Protein of unknown function (DUF4257) BLi03177 PF07690 Major Facilitator Superfamily BLi03178 PF03180 NLPA lipoprotein BLi03179 PF04791 LMBR1-like membrane protein BLi03181 PF12704 MacB-like periplasmic core domain BLi03181 PF02687 FtsX-like permease family BLi03182 PF00005 ABC transporter BLi03184 PF00005 ABC transporter BLi03185 PF00392 Bacterial regulatory proteins, gntR family BLi03186 PF10732 Protein of unknown function (DUF2524) BLi03187 PF16199 Radical_SAM C-terminal domain BLi03187 PF04055 Radical SAM superfamily BLi03188 PF06962 Putative rRNA methylase BLi03189 PF00375 Sodium:dicarboxylate symporter family BLi03190 PF10776 Protein of unknown function (DUF2600) BLi03191 PF12146 Serine aminopeptidase, S33 BLi03192 PF00132 Bacterial transferase hexapeptide (six repeats) BLi03193 PF01569 PAP2 superfamily BLi03194 PF13439 Glycosyltransferase Family 4 BLi03194 PF00534 Glycosyl transferases group 1 BLi03195 PF00733 Asparagine synthase BLi03195 PF13537 Glutamine amidotransferase domain BLi03196 PF00438 S-adenosylmethionine synthetase, N-terminal domain BLi03196 PF02772 S-adenosylmethionine synthetase, central domain BLi03196 PF02773 S-adenosylmethionine synthetase, C-terminal domain BLi03197 PF01293 Phosphoenolpyruvate carboxykinase BLi03199 PF10763 Protein of unknown function (DUF2584) BLi03200 PF00326 Prolyl oligopeptidase family BLi03202 PF00005 ABC transporter BLi03203 PF00528 Binding-protein-dependent transport system inner membrane component BLi03204 PF00293 NUDIX domain BLi03206 PF05105 Bacteriophage holin family BLi03207 PF00210 Ferritin-like domain BLi03208 PF13115 YtkA-like BLi03209 PF02664 S-Ribosylhomocysteinase (LuxS) BLi03210 PF01809 Putative membrane protein insertion efficiency factor BLi03211 PF00484 Carbonic anhydrase BLi03212 PF07683 Cobalamin synthesis protein cobW C-terminal domain BLi03212 PF02492 CobW/HypB/UreG, nucleotide-binding domain BLi03213 PF01297 Zinc-uptake complex component A periplasmic BLi03214 PF01197 Ribosomal protein L31 BLi03215 PF01654 Cytochrome bd terminal oxidase subunit I BLi03216 PF02322 Cytochrome bd terminal oxidase subunit II BLi03218 PF13378 Enolase C-terminal domain-like BLi03218 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BLi03219 PF13193 AMP-binding enzyme C-terminal domain BLi03219 PF00501 AMP-binding enzyme BLi03220 PF00378 Enoyl-CoA hydratase/isomerase BLi03221 PF00561 alpha/beta hydrolase fold BLi03222 PF16582 Middle domain of thiamine pyrophosphate BLi03222 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BLi03222 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BLi03223 PF00425 chorismate binding enzyme BLi03224 PF01040 UbiA prenyltransferase family BLi03225 PF01258 Prokaryotic dksA/traR C4-type zinc finger BLi03226 PF00343 Carbohydrate phosphorylase BLi03227 PF00534 Glycosyl transferases group 1 BLi03227 PF08323 Starch synthase catalytic domain BLi03228 PF00483 Nucleotidyl transferase BLi03229 PF00483 Nucleotidyl transferase BLi03230 PF02806 Alpha amylase, C-terminal all-beta domain BLi03230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BLi03230 PF00128 Alpha amylase, catalytic domain BLi03256 PF00392 Bacterial regulatory proteins, gntR family BLi03258 PF09515 Thiamine transporter protein (Thia_YuaJ) BLi03259 PF04203 Sortase domain BLi03261 PF18801 response regulator aspartate phosphatase H, N terminal BLi03263 PF01470 Pyroglutamyl peptidase BLi03264 PF02080 TrkA-C domain BLi03264 PF02254 TrkA-N domain BLi03265 PF02386 Cation transport protein BLi03267 PF12867 DinB superfamily BLi03269 PF00465 Iron-containing alcohol dehydrogenase BLi03273 PF04072 Leucine carboxyl methyltransferase BLi03274 PF00842 Alanine racemase, C-terminal domain BLi03274 PF01168 Alanine racemase, N-terminal domain BLi03285 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) BLi03287 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BLi03289 PF00149 Calcineurin-like phosphoesterase BLi03290 PF02673 Bacitracin resistance protein BacA BLi03291 PF01594 AI-2E family transporter BLi03293 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BLi03293 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BLi03294 PF01965 DJ-1/PfpI family BLi03295 PF02743 Cache domain BLi03295 PF00672 HAMP domain BLi03295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi03296 PF00672 HAMP domain BLi03296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi03296 PF02743 Cache domain BLi03297 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi03297 PF02743 Cache domain BLi03297 PF00672 HAMP domain BLi03299 PF03060 Nitronate monooxygenase BLi03300 PF01894 Uncharacterised protein family UPF0047 BLi03301 PF16657 Maltogenic Amylase, C-terminal domain BLi03301 PF00128 Alpha amylase, catalytic domain BLi03304 PF01670 Glycosyl hydrolase family 12 BLi03305 PF01595 Cyclin M transmembrane N-terminal domain BLi03305 PF00571 CBS domain BLi03305 PF03471 Transporter associated domain BLi03306 PF04298 Putative neutral zinc metallopeptidase BLi03308 PF11458 Membrane-integrating protein Mistic BLi03309 PF02254 TrkA-N domain BLi03309 PF07885 Ion channel BLi03310 PF08868 YugN-like family BLi03311 PF04239 Protein of unknown function (DUF421) BLi03312 PF03073 TspO/MBR family BLi03313 PF13302 Acetyltransferase (GNAT) domain BLi03314 PF00342 Phosphoglucose isomerase BLi03317 PF00465 Iron-containing alcohol dehydrogenase BLi03318 PF04070 Domain of unknown function (DUF378) BLi03319 PF00575 S1 RNA binding domain BLi03320 PF00155 Aminotransferase class I and II BLi03321 PF01037 Lrp/AsnC ligand binding domain BLi03322 PF08386 TAP-like protein BLi03322 PF00561 alpha/beta hydrolase fold BLi03324 PF08958 Domain of unknown function (DUF1871) BLi03326 PF00155 Aminotransferase class I and II BLi03328 PF08810 Kinase associated protein B BLi03329 PF00929 Exonuclease BLi03330 PF07690 Major Facilitator Superfamily BLi03331 PF00905 Penicillin binding protein transpeptidase domain BLi03331 PF00912 Transglycosylase BLi03332 PF04134 Protein of unknown function, DUF393 BLi03333 PF17328 Family of unknown function (DUF5366) BLi03334 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BLi03334 PF17203 Single cache domain 3 BLi03334 PF00989 PAS fold BLi03334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi03335 PF00072 Response regulator receiver domain BLi03337 PF01066 CDP-alcohol phosphatidyltransferase BLi03338 PF09335 SNARE associated Golgi protein BLi03339 PF02666 Phosphatidylserine decarboxylase BLi03340 PF00665 Integrase core domain BLi03340 PF13276 HTH-like domain BLi03340 PF13333 Integrase core domain BLi03342 PF03390 2-hydroxycarboxylate transporter family BLi03345 PF13244 Domain of unknown function (DUF4040) BLi03345 PF00361 Proton-conducting membrane transporter BLi03345 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BLi03346 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BLi03347 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BLi03348 PF00361 Proton-conducting membrane transporter BLi03349 PF01899 Na+/H+ ion antiporter subunit BLi03350 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BLi03351 PF03334 Na+/H+ antiporter subunit BLi03352 PF03061 Thioesterase superfamily BLi03353 PF00196 Bacterial regulatory proteins, luxR family BLi03353 PF00072 Response regulator receiver domain BLi03355 PF13333 Integrase core domain BLi03355 PF00665 Integrase core domain BLi03355 PF13276 HTH-like domain BLi03358 PF05952 Bacillus competence pheromone ComX BLi03360 PF08181 DegQ (SacQ) family BLi03362 PF08668 HDOD domain BLi03362 PF00563 EAL domain BLi03363 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BLi03363 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BLi03363 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BLi03364 PF00857 Isochorismatase family BLi03365 PF07997 Protein of unknown function (DUF1694) BLi03366 PF14166 YueH-like protein BLi03368 PF01594 AI-2E family transporter BLi03369 PF02082 Transcriptional regulator BLi03370 PF00331 Glycosyl hydrolase family 10 BLi03370 PF07859 alpha/beta hydrolase fold BLi03372 PF01966 HD domain BLi03373 PF00106 short chain dehydrogenase BLi03374 PF17355 Family of unknown function (DUF5383) BLi03376 PF01580 FtsK/SpoIIIE family BLi03376 PF12538 DNA transporter BLi03377 PF10140 WXG100 protein secretion system (Wss), protein YukC BLi03378 PF08817 WXG100 protein secretion system (Wss), protein YukD BLi03379 PF06013 Proteins of 100 residues with WXG BLi03380 PF01235 Sodium:alanine symporter family BLi03381 PF06018 CodY GAF-like domain BLi03381 PF17853 GGDEF-like domain BLi03381 PF13556 PucR C-terminal helix-turn-helix domain BLi03382 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BLi03382 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BLi03384 PF00174 Oxidoreductase molybdopterin binding domain BLi03385 PF02632 BioY family BLi03386 PF13726 Na+-H+ antiporter family BLi03386 PF03553 Na+/H+ antiporter family BLi03387 PF00883 Cytosol aminopeptidase family, catalytic domain BLi03387 PF02789 Cytosol aminopeptidase family, N-terminal domain BLi03388 PF02681 Divergent PAP2 family BLi03389 PF06725 3D domain BLi03390 PF14068 Putative membrane protein BLi03391 PF17302 Family of unknown function (DUF5351) BLi03392 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi03393 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi03396 PF14169 Cold-inducible protein YdjO BLi03397 PF00583 Acetyltransferase (GNAT) family BLi03398 PF01521 Iron-sulphur cluster biosynthesis BLi03399 PF01678 Diaminopimelate epimerase BLi03400 PF07662 Na+ dependent nucleoside transporter C-terminus BLi03400 PF01773 Na+ dependent nucleoside transporter N-terminus BLi03401 PF07293 Protein of unknown function (DUF1450) BLi03402 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi03403 PF08818 Domain of unknown function (DU1801) BLi03406 PF18801 response regulator aspartate phosphatase H, N terminal BLi03407 PF05870 Phenolic acid decarboxylase (PAD) BLi03409 PF07315 Protein of unknown function (DUF1462) BLi03410 PF01106 NifU-like domain BLi03411 PF00326 Prolyl oligopeptidase family BLi03411 PF07676 WD40-like Beta Propeller Repeat BLi03412 PF00288 GHMP kinases N terminal domain BLi03412 PF08544 GHMP kinases C terminal BLi03413 PF00291 Pyridoxal-phosphate dependent enzyme BLi03414 PF03447 Homoserine dehydrogenase, NAD binding domain BLi03414 PF00742 Homoserine dehydrogenase BLi03414 PF01842 ACT domain BLi03415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BLi03415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BLi03417 PF04608 Phosphatidylglycerophosphatase A BLi03418 PF13344 Haloacid dehalogenase-like hydrolase BLi03419 PF01934 Protein of unknown function DUF86 BLi03420 PF06265 Protein of unknown function (DUF1027) BLi03421 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BLi03422 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BLi03422 PF04055 Radical SAM superfamily BLi03423 PF01551 Peptidase family M23 BLi03425 PF00209 Sodium:neurotransmitter symporter family BLi03426 PF09560 Sporulation protein YunB (Spo_YunB) BLi03427 PF08827 Domain of unknown function (DUF1805) BLi03428 PF02872 5'-nucleotidase, C-terminal domain BLi03429 PF01925 Sulfite exporter TauE/SafE BLi03430 PF01904 Protein of unknown function DUF72 BLi03432 PF13977 BetI-type transcriptional repressor, C-terminal BLi03432 PF00440 Bacterial regulatory proteins, tetR family BLi03434 PF00266 Aminotransferase class-V BLi03435 PF01546 Peptidase family M20/M25/M40 BLi03436 PF17853 GGDEF-like domain BLi03436 PF07905 Purine catabolism regulatory protein-like family BLi03436 PF13556 PucR C-terminal helix-turn-helix domain BLi03437 PF07690 Major Facilitator Superfamily BLi03438 PF03606 C4-dicarboxylate anaerobic carrier BLi03439 PF02885 Glycosyl transferase family, helical bundle domain BLi03439 PF00591 Glycosyl transferase family, a/b domain BLi03440 PF00591 Glycosyl transferase family, a/b domain BLi03440 PF02885 Glycosyl transferase family, helical bundle domain BLi03441 PF04231 Endonuclease I BLi03443 PF01266 FAD dependent oxidoreductase BLi03446 PF18801 response regulator aspartate phosphatase H, N terminal BLi03447 PF01458 Uncharacterized protein family (UPF0051) BLi03448 PF01592 NifU-like N terminal domain BLi03449 PF00266 Aminotransferase class-V BLi03450 PF01458 Uncharacterized protein family (UPF0051) BLi03451 PF00005 ABC transporter BLi03452 PF16916 Dimerisation domain of Zinc Transporter BLi03452 PF01545 Cation efflux family BLi03454 PF02627 Carboxymuconolactone decarboxylase family BLi03455 PF03180 NLPA lipoprotein BLi03456 PF00528 Binding-protein-dependent transport system inner membrane component BLi03457 PF00005 ABC transporter BLi03457 PF09383 NIL domain BLi03458 PF02036 SCP-2 sterol transfer family BLi03459 PF00085 Thioredoxin BLi03460 PF01751 Toprim domain BLi03461 PF10830 Protein of unknown function (DUF2553) BLi03462 PF01597 Glycine cleavage H-protein BLi03463 PF03960 ArsC family BLi03464 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BLi03464 PF02770 Acyl-CoA dehydrogenase, middle domain BLi03464 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BLi03465 PF00108 Thiolase, N-terminal domain BLi03465 PF02803 Thiolase, C-terminal domain BLi03466 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BLi03466 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BLi03466 PF00378 Enoyl-CoA hydratase/isomerase BLi03467 PF14115 YuzL-like protein BLi03469 PF07875 Coat F domain BLi03470 PF10835 Protein of unknown function (DUF2573) BLi03472 PF00005 ABC transporter BLi03473 PF01032 FecCD transport family BLi03474 PF01032 FecCD transport family BLi03475 PF01497 Periplasmic binding protein BLi03476 PF14039 YusW-like protein BLi03478 PF07943 Penicillin-binding protein 5, C-terminal domain BLi03478 PF00768 D-alanyl-D-alanine carboxypeptidase BLi03479 PF00106 short chain dehydrogenase BLi03480 PF00210 Ferritin-like domain BLi03481 PF13180 PDZ domain BLi03482 PF00072 Response regulator receiver domain BLi03482 PF00486 Transcriptional regulatory protein, C terminal BLi03483 PF00672 HAMP domain BLi03483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi03483 PF00512 His Kinase A (phospho-acceptor) domain BLi03485 PF00440 Bacterial regulatory proteins, tetR family BLi03486 PF10415 Fumarase C C-terminus BLi03486 PF00206 Lyase BLi03487 PF13113 Protein of unknown function (DUF3970) BLi03488 PF03323 Bacillus/Clostridium GerA spore germination protein BLi03489 PF03845 Spore germination protein BLi03490 PF05504 Spore germination B3/ GerAC like, C-terminal BLi03492 PF00196 Bacterial regulatory proteins, luxR family BLi03492 PF00072 Response regulator receiver domain BLi03493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi03493 PF07730 Histidine kinase BLi03493 PF00672 HAMP domain BLi03494 PF09922 Cell wall-active antibiotics response 4TMS YvqF BLi03496 PF04012 PspA/IM30 family BLi03498 PF01095 Pectinesterase BLi03499 PF01923 Cobalamin adenosyltransferase BLi03501 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BLi03502 PF00465 Iron-containing alcohol dehydrogenase BLi03503 PF00701 Dihydrodipicolinate synthetase family BLi03504 PF00005 ABC transporter BLi03505 PF01032 FecCD transport family BLi03506 PF01497 Periplasmic binding protein BLi03507 PF07729 FCD domain BLi03507 PF00392 Bacterial regulatory proteins, gntR family BLi03508 PF00106 short chain dehydrogenase BLi03509 PF03473 MOSC domain BLi03509 PF03475 3-alpha domain BLi03510 PF03466 LysR substrate binding domain BLi03510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi03511 PF00295 Glycosyl hydrolases family 28 BLi03512 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BLi03512 PF08666 SAF domain BLi03513 PF08125 Mannitol dehydrogenase C-terminal domain BLi03513 PF01232 Mannitol dehydrogenase Rossmann domain BLi03514 PF00356 Bacterial regulatory proteins, lacI family BLi03516 PF02614 Glucuronate isomerase BLi03517 PF00512 His Kinase A (phospho-acceptor) domain BLi03517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi03518 PF00072 Response regulator receiver domain BLi03518 PF00486 Transcriptional regulatory protein, C terminal BLi03519 PF00005 ABC transporter BLi03520 PF01032 FecCD transport family BLi03521 PF01032 FecCD transport family BLi03522 PF13520 Amino acid permease BLi03524 PF09575 Small spore protein J (Spore_SspJ) BLi03525 PF04307 LexA-binding, inner membrane-associated putative hydrolase BLi03526 PF00884 Sulfatase BLi03527 PF07690 Major Facilitator Superfamily BLi03528 PF00248 Aldo/keto reductase family BLi03529 PF00480 ROK family BLi03531 PF00266 Aminotransferase class-V BLi03533 PF13538 UvrD-like helicase C-terminal domain BLi03534 PF03458 UPF0126 domain BLi03535 PF04229 GrpB protein BLi03535 PF13673 Acetyltransferase (GNAT) domain BLi03536 PF00583 Acetyltransferase (GNAT) family BLi03536 PF13673 Acetyltransferase (GNAT) domain BLi03537 PF02600 Disulfide bond formation protein DsbB BLi03538 PF13462 Thioredoxin BLi03539 PF00403 Heavy-metal-associated domain BLi03540 PF13416 Bacterial extracellular solute-binding protein BLi03541 PF00528 Binding-protein-dependent transport system inner membrane component BLi03542 PF00528 Binding-protein-dependent transport system inner membrane component BLi03543 PF13802 Galactose mutarotase-like BLi03543 PF01055 Glycosyl hydrolases family 31 BLi03544 PF14310 Fibronectin type III-like domain BLi03544 PF01915 Glycosyl hydrolase family 3 C-terminal domain BLi03544 PF07691 PA14 domain BLi03544 PF00933 Glycosyl hydrolase family 3 N terminal domain BLi03545 PF00005 ABC transporter BLi03546 PF00950 ABC 3 transport family BLi03547 PF01297 Zinc-uptake complex component A periplasmic BLi03548 PF01418 Helix-turn-helix domain, rpiR family BLi03548 PF01380 SIS domain BLi03550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi03550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi03552 PF01116 Fructose-bisphosphate aldolase class-II BLi03553 PF00403 Heavy-metal-associated domain BLi03554 PF00403 Heavy-metal-associated domain BLi03555 PF02583 Metal-sensitive transcriptional repressor BLi03556 PF01965 DJ-1/PfpI family BLi03557 PF00455 DeoR C terminal sensor domain BLi03557 PF08220 DeoR-like helix-turn-helix domain BLi03558 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BLi03558 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BLi03559 PF01261 Xylose isomerase-like TIM barrel BLi03561 PF00596 Class II Aldolase and Adducin N-terminal domain BLi03562 PF07690 Major Facilitator Superfamily BLi03565 PF07690 Major Facilitator Superfamily BLi03566 PF16715 Cyclodipeptide synthase BLi03567 PF00067 Cytochrome P450 BLi03569 PF01047 MarR family BLi03572 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BLi03572 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BLi03573 PF02525 Flavodoxin-like fold BLi03577 PF04545 Sigma-70, region 4 BLi03579 PF12841 YvrJ protein family BLi03580 PF00190 Cupin BLi03581 PF14184 Regulatory protein YrvL BLi03586 PF01471 Putative peptidoglycan binding domain BLi03586 PF01510 N-acetylmuramoyl-L-alanine amidase BLi03590 PF00665 Integrase core domain BLi03590 PF13333 Integrase core domain BLi03590 PF13276 HTH-like domain BLi03592 PF01726 LexA DNA binding domain BLi03592 PF00717 Peptidase S24-like BLi03596 PF04740 LXG domain of WXG superfamily BLi03596 PF14449 Pre-toxin TG BLi03598 PF01510 N-acetylmuramoyl-L-alanine amidase BLi03598 PF01471 Putative peptidoglycan binding domain BLi03599 PF04688 SPP1 phage holin BLi03600 PF10779 Haemolysin XhlA BLi03604 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BLi03604 PF13457 GW (Gly-Tryp) dipeptide domain BLi03606 PF01464 Transglycosylase SLT domain BLi03615 PF00574 Clp protease BLi03618 PF03354 Phage Terminase BLi03640 PF01668 SmpB protein BLi03641 PF08206 Ribonuclease B OB domain BLi03641 PF17876 Cold shock domain BLi03641 PF00575 S1 RNA binding domain BLi03641 PF00773 RNB domain BLi03642 PF12146 Serine aminopeptidase, S33 BLi03643 PF03840 Preprotein translocase SecG subunit BLi03644 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BLi03644 PF18277 AbrB C-terminal domain BLi03645 PF01381 Helix-turn-helix BLi03648 PF00528 Binding-protein-dependent transport system inner membrane component BLi03649 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BLi03650 PF00528 Binding-protein-dependent transport system inner membrane component BLi03651 PF00005 ABC transporter BLi03651 PF00571 CBS domain BLi03652 PF12802 MarR family BLi03653 PF01914 MarC family integral membrane protein BLi03657 PF01497 Periplasmic binding protein BLi03661 PF00113 Enolase, C-terminal TIM barrel domain BLi03661 PF03952 Enolase, N-terminal domain BLi03662 PF01676 Metalloenzyme superfamily BLi03662 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BLi03663 PF00121 Triosephosphate isomerase BLi03664 PF00162 Phosphoglycerate kinase BLi03665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BLi03665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BLi03666 PF04198 Putative sugar-binding domain BLi03668 PF00296 Luciferase-like monooxygenase BLi03669 PF00324 Amino acid permease BLi03671 PF00005 ABC transporter BLi03673 PF02589 LUD domain BLi03674 PF11870 Domain of unknown function (DUF3390) BLi03674 PF13183 4Fe-4S dicluster domain BLi03674 PF02589 LUD domain BLi03675 PF02754 Cysteine-rich domain BLi03676 PF07729 FCD domain BLi03676 PF00392 Bacterial regulatory proteins, gntR family BLi03677 PF02652 L-lactate permease BLi03678 PF04552 Sigma-54, DNA binding domain BLi03678 PF00309 Sigma-54 factor, Activator interacting domain (AID) BLi03678 PF04963 Sigma-54 factor, core binding domain BLi03679 PF09628 YvfG protein BLi03680 PF04230 Polysaccharide pyruvyl transferase BLi03681 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BLi03682 PF17836 PglD N-terminal domain BLi03682 PF00132 Bacterial transferase hexapeptide (six repeats) BLi03683 PF02397 Bacterial sugar transferase BLi03684 PF14667 Polysaccharide biosynthesis C-terminal domain BLi03684 PF01943 Polysaccharide biosynthesis protein BLi03685 PF00535 Glycosyl transferase family 2 BLi03686 PF04230 Polysaccharide pyruvyl transferase BLi03687 PF00535 Glycosyl transferase family 2 BLi03689 PF13439 Glycosyltransferase Family 4 BLi03689 PF00534 Glycosyl transferases group 1 BLi03690 PF00535 Glycosyl transferase family 2 BLi03691 PF13439 Glycosyltransferase Family 4 BLi03691 PF00534 Glycosyl transferases group 1 BLi03692 PF02719 Polysaccharide biosynthesis protein BLi03693 PF13614 AAA domain BLi03694 PF02706 Chain length determinant protein BLi03695 PF01381 Helix-turn-helix BLi03695 PF08671 Anti-repressor SinI BLi03696 PF02525 Flavodoxin-like fold BLi03697 PF07690 Major Facilitator Superfamily BLi03698 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BLi03698 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BLi03698 PF01842 ACT domain BLi03699 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BLi03700 PF07005 Sugar-binding N-terminal domain BLi03700 PF17042 Nucleotide-binding C-terminal domain BLi03701 PF00465 Iron-containing alcohol dehydrogenase BLi03702 PF00701 Dihydrodipicolinate synthetase family BLi03703 PF00158 Sigma-54 interaction domain BLi03703 PF02954 Bacterial regulatory protein, Fis family BLi03703 PF13426 PAS domain BLi03704 PF01638 HxlR-like helix-turn-helix BLi03705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BLi03706 PF02435 Levansucrase/Invertase BLi03707 PF08244 Glycosyl hydrolases family 32 C terminal BLi03707 PF00251 Glycosyl hydrolases family 32 N-terminal domain BLi03710 PF00574 Clp protease BLi03711 PF03641 Possible lysine decarboxylase BLi03712 PF03819 MazG nucleotide pyrophosphohydrolase domain BLi03713 PF01966 HD domain BLi03714 PF01740 STAS domain BLi03714 PF00916 Sulfate permease family BLi03715 PF00484 Carbonic anhydrase BLi03716 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BLi03716 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BLi03717 PF01613 Flavin reductase like domain BLi03719 PF00545 ribonuclease BLi03720 PF01337 Barstar (barnase inhibitor) BLi03721 PF00797 N-acetyltransferase BLi03722 PF00381 PTS HPr component phosphorylation site BLi03723 PF10298 WhiA N-terminal LAGLIDADG-like domain BLi03723 PF14527 WhiA LAGLIDADG-like domain BLi03723 PF02650 WhiA C-terminal HTH domain BLi03724 PF01933 Uncharacterised protein family UPF0052 BLi03725 PF03668 P-loop ATPase protein family BLi03726 PF00293 NUDIX domain BLi03728 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi03731 PF01502 Phosphoribosyl-AMP cyclohydrolase BLi03731 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BLi03732 PF00977 Histidine biosynthesis protein BLi03733 PF00977 Histidine biosynthesis protein BLi03734 PF00117 Glutamine amidotransferase class-I BLi03735 PF00475 Imidazoleglycerol-phosphate dehydratase BLi03736 PF00815 Histidinol dehydrogenase BLi03737 PF01634 ATP phosphoribosyltransferase BLi03738 PF13393 Histidyl-tRNA synthetase BLi03739 PF13529 Peptidase_C39 like family BLi03741 PF03211 Pectate lyase BLi03742 PF14602 Hexapeptide repeat of succinyl-transferase BLi03743 PF13419 Haloacid dehalogenase-like hydrolase BLi03744 PF07670 Nucleoside recognition BLi03745 PF01790 Prolipoprotein diacylglyceryl transferase BLi03746 PF07475 HPr Serine kinase C-terminal domain BLi03746 PF02603 HPr Serine kinase N terminus BLi03747 PF01047 MarR family BLi03748 PF07690 Major Facilitator Superfamily BLi03749 PF00149 Calcineurin-like phosphoesterase BLi03750 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BLi03751 PF04024 PspC domain BLi03752 PF13349 Putative adhesin BLi03755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi03758 PF00005 ABC transporter BLi03758 PF17755 UvrA DNA-binding domain BLi03758 PF17760 UvrA interaction domain BLi03759 PF02151 UvrB/uvrC motif BLi03759 PF12344 Ultra-violet resistance protein B BLi03759 PF00271 Helicase conserved C-terminal domain BLi03759 PF04851 Type III restriction enzyme, res subunit BLi03759 PF17757 UvrB interaction domain BLi03760 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) BLi03762 PF17820 PDZ domain BLi03764 PF17423 Swarming motility protein BLi03765 PF03572 Peptidase family S41 BLi03765 PF01471 Putative peptidoglycan binding domain BLi03765 PF17820 PDZ domain BLi03766 PF00180 Isocitrate/isopropylmalate dehydrogenase BLi03767 PF00877 NlpC/P60 family BLi03768 PF18075 FtsX extracellular domain BLi03768 PF02687 FtsX-like permease family BLi03769 PF00005 ABC transporter BLi03770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BLi03771 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BLi03771 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BLi03772 PF00472 RF-1 domain BLi03772 PF03462 PCRF domain BLi03773 PF07516 SecA Wing and Scaffold domain BLi03773 PF01043 SecA preprotein cross-linking domain BLi03773 PF07517 SecA DEAD-like domain BLi03773 PF02810 SEC-C motif BLi03774 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BLi03774 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BLi03777 PF02561 Flagellar protein FliS BLi03778 PF07196 Flagellin hook IN motif BLi03778 PF02465 Flagellar hook-associated protein 2 N-terminus BLi03778 PF07195 Flagellar hook-associated protein 2 C-terminus BLi03779 PF03646 FlaG protein BLi03780 PF00669 Bacterial flagellin N-terminal helical region BLi03780 PF00700 Bacterial flagellin C-terminal helical region BLi03781 PF02599 Global regulator protein family BLi03782 PF02623 FliW protein BLi03784 PF00669 Bacterial flagellin N-terminal helical region BLi03784 PF00700 Bacterial flagellin C-terminal helical region BLi03785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BLi03785 PF00460 Flagella basal body rod protein BLi03786 PF05130 FlgN protein BLi03787 PF04316 Anti-sigma-28 factor, FlgM BLi03790 PF10719 Late competence development protein ComFB BLi03791 PF00271 Helicase conserved C-terminal domain BLi03791 PF04851 Type III restriction enzyme, res subunit BLi03792 PF02645 Uncharacterised protein, DegV family COG1307 BLi03793 PF00072 Response regulator receiver domain BLi03793 PF00196 Bacterial regulatory proteins, luxR family BLi03794 PF05384 Sensor protein DegS BLi03794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi03794 PF07730 Histidine kinase BLi03795 PF01205 Uncharacterized protein family UPF0029 BLi03795 PF09186 Domain of unknown function (DUF1949) BLi03796 PF03816 Cell envelope-related transcriptional attenuator domain BLi03798 PF00953 Glycosyl transferase family 4 BLi03800 PF00535 Glycosyl transferase family 2 BLi03801 PF02706 Chain length determinant protein BLi03802 PF04932 O-Antigen ligase BLi03803 PF16363 GDP-mannose 4,6 dehydratase BLi03804 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BLi03804 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BLi03804 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BLi03805 PF00534 Glycosyl transferases group 1 BLi03805 PF13439 Glycosyltransferase Family 4 BLi03806 PF01943 Polysaccharide biosynthesis protein BLi03806 PF14667 Polysaccharide biosynthesis C-terminal domain BLi03807 PF02397 Bacterial sugar transferase BLi03808 PF04122 Putative cell wall binding repeat 2 BLi03808 PF01520 N-acetylmuramoyl-L-alanine amidase BLi03809 PF04122 Putative cell wall binding repeat 2 BLi03809 PF08486 Stage II sporulation protein BLi03811 PF03816 Cell envelope-related transcriptional attenuator domain BLi03812 PF02350 UDP-N-acetylglucosamine 2-epimerase BLi03813 PF00483 Nucleotidyl transferase BLi03814 PF00005 ABC transporter BLi03815 PF01061 ABC-2 type transporter BLi03816 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BLi03816 PF00535 Glycosyl transferase family 2 BLi03817 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BLi03818 PF01467 Cytidylyltransferase-like BLi03819 PF03808 Glycosyl transferase WecB/TagA/CpsF family BLi03820 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BLi03821 PF05036 Sporulation related domain BLi03821 PF08239 Bacterial SH3 domain BLi03821 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BLi03822 PF01238 Phosphomannose isomerase type I BLi03823 PF04055 Radical SAM superfamily BLi03824 PF13597 Anaerobic ribonucleoside-triphosphate reductase BLi03824 PF03477 ATP cone domain BLi03825 PF03812 2-keto-3-deoxygluconate permease BLi03826 PF01081 KDPG and KHG aldolase BLi03827 PF00294 pfkB family carbohydrate kinase BLi03828 PF00356 Bacterial regulatory proteins, lacI family BLi03829 PF04962 KduI/IolB family BLi03831 PF13823 Alcohol dehydrogenase GroES-associated BLi03831 PF08240 Alcohol dehydrogenase GroES-like domain BLi03831 PF00107 Zinc-binding dehydrogenase BLi03832 PF00083 Sugar (and other) transporter BLi03833 PF03816 Cell envelope-related transcriptional attenuator domain BLi03835 PF00877 NlpC/P60 family BLi03837 PF09587 Bacterial capsule synthesis protein PGA_cap BLi03838 PF14102 Capsule biosynthesis CapC BLi03839 PF08245 Mur ligase middle domain BLi03840 PF00356 Bacterial regulatory proteins, lacI family BLi03841 PF00294 pfkB family carbohydrate kinase BLi03842 PF05025 RbsD / FucU transport protein family BLi03843 PF00005 ABC transporter BLi03844 PF02653 Branched-chain amino acid transport system / permease component BLi03845 PF13407 Periplasmic binding protein domain BLi03847 PF03306 Alpha-acetolactate decarboxylase BLi03848 PF00205 Thiamine pyrophosphate enzyme, central domain BLi03848 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BLi03848 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BLi03849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BLi03849 PF03466 LysR substrate binding domain BLi03851 PF13404 AsnC-type helix-turn-helix domain BLi03851 PF01037 Lrp/AsnC ligand binding domain BLi03852 PF02417 Chromate transporter BLi03853 PF02417 Chromate transporter BLi03855 PF02706 Chain length determinant protein BLi03855 PF13807 G-rich domain on putative tyrosine kinase BLi03857 PF04434 SWIM zinc finger BLi03858 PF12419 SNF2 Helicase protein BLi03858 PF00271 Helicase conserved C-terminal domain BLi03858 PF00176 SNF2 family N-terminal domain BLi03861 PF00455 DeoR C terminal sensor domain BLi03861 PF08220 DeoR-like helix-turn-helix domain BLi03862 PF00923 Transaldolase/Fructose-6-phosphate aldolase BLi03863 PF00106 short chain dehydrogenase BLi03864 PF03829 PTS system glucitol/sorbitol-specific IIA component BLi03865 PF07663 Sorbitol phosphotransferase enzyme II C-terminus BLi03865 PF03612 Sorbitol phosphotransferase enzyme II N-terminus BLi03866 PF03608 PTS system enzyme II sorbitol-specific factor BLi03868 PF04198 Putative sugar-binding domain BLi03868 PF13936 Helix-turn-helix domain BLi03869 PF00436 Single-strand binding protein family BLi03871 PF14183 YwpF-like protein BLi03872 PF01741 Large-conductance mechanosensitive channel, MscL BLi03873 PF07977 FabA-like domain BLi03874 PF00460 Flagella basal body rod protein BLi03874 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BLi03875 PF00460 Flagella basal body rod protein BLi03875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BLi03878 PF12116 Stage III sporulation protein D BLi03879 PF01047 MarR family BLi03880 PF07690 Major Facilitator Superfamily BLi03881 PF01569 PAP2 superfamily BLi03882 PF02833 DHHA2 domain BLi03882 PF01368 DHH family BLi03883 PF05067 Manganese containing catalase BLi03884 PF09844 Uncharacterized conserved protein (COG2071) BLi03885 PF00571 CBS domain BLi03886 PF01544 CorA-like Mg2+ transporter protein BLi03887 PF01595 Cyclin M transmembrane N-terminal domain BLi03887 PF00571 CBS domain BLi03887 PF03471 Transporter associated domain BLi03888 PF00909 Ammonium Transporter Family BLi03889 PF00543 Nitrogen regulatory protein P-II BLi03890 PF00574 Clp protease BLi03891 PF04542 Sigma-70 region 2 BLi03891 PF12680 SnoaL-like domain BLi03891 PF08281 Sigma-70, region 4 BLi03892 PF01551 Peptidase family M23 BLi03893 PF00583 Acetyltransferase (GNAT) family BLi03894 PF17370 Family of unknown function (DUF5392) BLi03895 PF13396 Phospholipase_D-nuclease N-terminal BLi03895 PF13091 PLD-like domain BLi03896 PF07690 Major Facilitator Superfamily BLi03897 PF03621 MbtH-like protein BLi03898 PF00668 Condensation domain BLi03898 PF00550 Phosphopantetheine attachment site BLi03898 PF13193 AMP-binding enzyme C-terminal domain BLi03898 PF00975 Thioesterase domain BLi03898 PF00501 AMP-binding enzyme BLi03899 PF00550 Phosphopantetheine attachment site BLi03899 PF00857 Isochorismatase family BLi03900 PF00501 AMP-binding enzyme BLi03900 PF13193 AMP-binding enzyme C-terminal domain BLi03901 PF00425 chorismate binding enzyme BLi03902 PF00106 short chain dehydrogenase BLi03903 PF00756 Putative esterase BLi03904 PF01032 FecCD transport family BLi03905 PF01032 FecCD transport family BLi03906 PF01497 Periplasmic binding protein BLi03907 PF01497 Periplasmic binding protein BLi03907 PF12833 Helix-turn-helix domain BLi03908 PF17319 Family of unknown function (DUF5362) BLi03909 PF13333 Integrase core domain BLi03909 PF13276 HTH-like domain BLi03909 PF00665 Integrase core domain BLi03911 PF13460 NAD(P)H-binding BLi03912 PF02082 Transcriptional regulator BLi03915 PF06463 Molybdenum Cofactor Synthesis C BLi03915 PF04055 Radical SAM superfamily BLi03916 PF02634 FdhD/NarQ family BLi03917 PF07690 Major Facilitator Superfamily BLi03918 PF01568 Molydopterin dinucleotide binding domain BLi03918 PF12838 4Fe-4S dicluster domain BLi03918 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BLi03918 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BLi03918 PF00384 Molybdopterin oxidoreductase BLi03919 PF00092 von Willebrand factor type A domain BLi03920 PF00092 von Willebrand factor type A domain BLi03921 PF08486 Stage II sporulation protein BLi03922 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BLi03923 PF08680 TATA-box binding BLi03924 PF06612 Protein of unknown function (DUF1146) BLi03925 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BLi03925 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BLi03926 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BLi03926 PF02874 ATP synthase alpha/beta family, beta-barrel domain BLi03927 PF00231 ATP synthase BLi03928 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BLi03928 PF00306 ATP synthase alpha/beta chain, C terminal domain BLi03928 PF02874 ATP synthase alpha/beta family, beta-barrel domain BLi03929 PF00213 ATP synthase delta (OSCP) subunit BLi03930 PF00430 ATP synthase B/B' CF(0) BLi03931 PF00137 ATP synthase subunit C BLi03932 PF00119 ATP synthase A chain BLi03933 PF03899 ATP synthase I chain BLi03935 PF00464 Serine hydroxymethyltransferase BLi03936 PF04260 Protein of unknown function (DUF436) BLi03937 PF02502 Ribose/Galactose Isomerase BLi03938 PF01451 Low molecular weight phosphotyrosine protein phosphatase BLi03939 PF02659 Putative manganese efflux pump BLi03940 PF03481 Putative GTP-binding controlling metal-binding BLi03940 PF01300 Telomere recombination BLi03942 PF09551 Stage II sporulation protein R (spore_II_R) BLi03943 PF07690 Major Facilitator Superfamily BLi03944 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BLi03944 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BLi03945 PF05116 Sucrose-6F-phosphate phosphohydrolase BLi03946 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BLi03947 PF00356 Bacterial regulatory proteins, lacI family BLi03948 PF05175 Methyltransferase small domain BLi03948 PF17827 PrmC N-terminal domain BLi03949 PF00472 RF-1 domain BLi03949 PF03462 PCRF domain BLi03950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi03951 PF13411 MerR HTH family regulatory protein BLi03952 PF03547 Membrane transport protein BLi03953 PF00390 Malic enzyme, N-terminal domain BLi03953 PF03949 Malic enzyme, NAD binding domain BLi03954 PF00265 Thymidine kinase BLi03955 PF01197 Ribosomal protein L31 BLi03956 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BLi03956 PF07497 Rho termination factor, RNA-binding domain BLi03956 PF07498 Rho termination factor, N-terminal domain BLi03957 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BLi03958 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BLi03959 PF00923 Transaldolase/Fructose-6-phosphate aldolase BLi03960 PF01116 Fructose-bisphosphate aldolase class-II BLi03961 PF00072 Response regulator receiver domain BLi03962 PF10740 Domain of unknown function (DUF2529) BLi03963 PF06418 CTP synthase N-terminus BLi03963 PF00117 Glutamine amidotransferase class-I BLi03964 PF05066 HB1, ASXL, restriction endonuclease HTH domain BLi03965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BLi03965 PF02770 Acyl-CoA dehydrogenase, middle domain BLi03965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BLi03966 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BLi03966 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BLi03966 PF02770 Acyl-CoA dehydrogenase, middle domain BLi03967 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BLi03967 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BLi03968 PF02803 Thiolase, C-terminal domain BLi03968 PF00108 Thiolase, N-terminal domain BLi03969 PF13183 4Fe-4S dicluster domain BLi03969 PF02754 Cysteine-rich domain BLi03970 PF13091 PLD-like domain BLi03971 PF00750 tRNA synthetases class I (R) BLi03971 PF05746 DALR anticodon binding domain BLi03971 PF03485 Arginyl tRNA synthetase N terminal domain BLi03972 PF09148 Domain of unknown function (DUF1934) BLi03973 PF00491 Arginase family BLi03974 PF17284 Spermidine synthase tetramerisation domain BLi03977 PF00912 Transglycosylase BLi03977 PF00905 Penicillin binding protein transpeptidase domain BLi03978 PF08741 YwhD family BLi03979 PF02163 Peptidase family M50 BLi03980 PF01361 Tautomerase enzyme BLi03983 PF01966 HD domain BLi03984 PF07293 Protein of unknown function (DUF1450) BLi03986 PF14154 Domain of unknown function (DUF4306) BLi03988 PF03099 Biotin/lipoate A/B protein ligase family BLi03989 PF01494 FAD binding domain BLi03990 PF07690 Major Facilitator Superfamily BLi03992 PF01361 Tautomerase enzyme BLi03994 PF00171 Aldehyde dehydrogenase family BLi03995 PF01614 Bacterial transcriptional regulator BLi03995 PF09339 IclR helix-turn-helix domain BLi03997 PF01515 Phosphate acetyl/butaryl transferase BLi03999 PF17735 Biofilm surface layer A BLi04001 PF02386 Cation transport protein BLi04002 PF09671 Spore coat protein (Spore_GerQ) BLi04005 PF00005 ABC transporter BLi04007 PF00072 Response regulator receiver domain BLi04007 PF00196 Bacterial regulatory proteins, luxR family BLi04008 PF04241 Protein of unknown function (DUF423) BLi04009 PF00860 Permease family BLi04010 PF17261 Family of unknown function (DUF5327) BLi04011 PF00171 Aldehyde dehydrogenase family BLi04012 PF03167 Uracil DNA glycosylase superfamily BLi04013 PF00535 Glycosyl transferase family 2 BLi04014 PF08543 Phosphomethylpyrimidine kinase BLi04016 PF00251 Glycosyl hydrolases family 32 N-terminal domain BLi04016 PF08244 Glycosyl hydrolases family 32 C terminal BLi04017 PF00367 phosphotransferase system, EIIB BLi04017 PF02378 Phosphotransferase system, EIIC BLi04018 PF03123 CAT RNA binding domain BLi04018 PF00874 PRD domain BLi04019 PF00082 Subtilase family BLi04019 PF02225 PA domain BLi04019 PF05922 Peptidase inhibitor I9 BLi04019 PF13860 FlgD Ig-like domain BLi04021 PF00296 Luciferase-like monooxygenase BLi04022 PF00881 Nitroreductase family BLi04023 PF01546 Peptidase family M20/M25/M40 BLi04023 PF07687 Peptidase dimerisation domain BLi04024 PF01098 Cell cycle protein BLi04025 PF01098 Cell cycle protein BLi04028 PF17368 Spore morphogenesis and germination YwcE BLi04030 PF00583 Acetyltransferase (GNAT) family BLi04031 PF00005 ABC transporter BLi04032 PF00005 ABC transporter BLi04036 PF00072 Response regulator receiver domain BLi04036 PF00196 Bacterial regulatory proteins, luxR family BLi04037 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BLi04038 PF00510 Cytochrome c oxidase subunit III BLi04039 PF00115 Cytochrome C and Quinol oxidase polypeptide I BLi04040 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BLi04040 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BLi04041 PF16363 GDP-mannose 4,6 dehydratase BLi04045 PF04341 Protein of unknown function, DUF485 BLi04046 PF00474 Sodium:solute symporter family BLi04047 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BLi04047 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BLi04048 PF01261 Xylose isomerase-like TIM barrel BLi04049 PF00480 ROK family BLi04051 PF02581 Thiamine monophosphate synthase BLi04052 PF02110 Hydroxyethylthiazole kinase family BLi04057 PF03788 LrgA family BLi04058 PF04172 LrgB-like family BLi04059 PF00474 Sodium:solute symporter family BLi04060 PF17785 PUA-like domain BLi04060 PF10672 S-adenosylmethionine-dependent methyltransferase BLi04061 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BLi04064 PF01501 Glycosyl transferase family 8 BLi04065 PF07730 Histidine kinase BLi04065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi04066 PF00196 Bacterial regulatory proteins, luxR family BLi04066 PF00072 Response regulator receiver domain BLi04067 PF03176 MMPL family BLi04068 PF09529 Integral membrane protein (intg_mem_TP0381) BLi04069 PF07690 Major Facilitator Superfamily BLi04070 PF13378 Enolase C-terminal domain-like BLi04070 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BLi04071 PF01081 KDPG and KHG aldolase BLi04072 PF00294 pfkB family carbohydrate kinase BLi04073 PF01614 Bacterial transcriptional regulator BLi04073 PF09339 IclR helix-turn-helix domain BLi04074 PF02225 PA domain BLi04074 PF04389 Peptidase family M28 BLi04075 PF07690 Major Facilitator Superfamily BLi04078 PF04607 Region found in RelA / SpoT proteins BLi04079 PF12459 D-Ala-teichoic acid biosynthesis protein BLi04080 PF13193 AMP-binding enzyme C-terminal domain BLi04080 PF00501 AMP-binding enzyme BLi04081 PF03062 MBOAT, membrane-bound O-acyltransferase family BLi04082 PF00550 Phosphopantetheine attachment site BLi04083 PF04914 DltD protein BLi04084 PF01063 Amino-transferase class IV BLi04085 PF07690 Major Facilitator Superfamily BLi04086 PF11975 Family 4 glycosyl hydrolase C-terminal domain BLi04086 PF02056 Family 4 glycosyl hydrolase BLi04087 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BLi04088 PF02378 Phosphotransferase system, EIIC BLi04089 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BLi04090 PF05043 Mga helix-turn-helix domain BLi04090 PF00874 PRD domain BLi04090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BLi04090 PF08279 HTH domain BLi04092 PF02245 Methylpurine-DNA glycosylase (MPG) BLi04093 PF00392 Bacterial regulatory proteins, gntR family BLi04093 PF07729 FCD domain BLi04094 PF00285 Citrate synthase, C-terminal domain BLi04095 PF03972 MmgE/PrpD family BLi04099 PF00664 ABC transporter transmembrane region BLi04099 PF00005 ABC transporter BLi04100 PF13472 GDSL-like Lipase/Acylhydrolase family BLi04101 PF17735 Biofilm surface layer A BLi04102 PF17735 Biofilm surface layer A BLi04103 PF07690 Major Facilitator Superfamily BLi04104 PF12679 ABC-2 family transporter protein BLi04105 PF13732 Domain of unknown function (DUF4162) BLi04105 PF00005 ABC transporter BLi04106 PF13396 Phospholipase_D-nuclease N-terminal BLi04109 PF04542 Sigma-70 region 2 BLi04109 PF08281 Sigma-70, region 4 BLi04110 PF07690 Major Facilitator Superfamily BLi04111 PF06628 Catalase-related immune-responsive BLi04111 PF00199 Catalase BLi04113 PF00199 Catalase BLi04113 PF06628 Catalase-related immune-responsive BLi04114 PF01475 Ferric uptake regulator family BLi04116 PF12679 ABC-2 family transporter protein BLi04117 PF00005 ABC transporter BLi04120 PF00005 ABC transporter BLi04124 PF00082 Subtilase family BLi04125 PF00005 ABC transporter BLi04125 PF03412 Peptidase C39 family BLi04125 PF00664 ABC transporter transmembrane region BLi04127 PF14867 Lantibiotic alpha BLi04129 PF00544 Pectate lyase BLi04130 PF01256 Carbohydrate kinase BLi04131 PF00664 ABC transporter transmembrane region BLi04131 PF00005 ABC transporter BLi04132 PF00005 ABC transporter BLi04132 PF00664 ABC transporter transmembrane region BLi04133 PF02322 Cytochrome bd terminal oxidase subunit II BLi04134 PF01654 Cytochrome bd terminal oxidase subunit I BLi04135 PF01226 Formate/nitrite transporter BLi04137 PF03949 Malic enzyme, NAD binding domain BLi04137 PF00390 Malic enzyme, N-terminal domain BLi04137 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BLi04138 PF03553 Na+/H+ antiporter family BLi04139 PF00206 Lyase BLi04139 PF10415 Fumarase C C-terminus BLi04140 PF00710 Asparaginase, N-terminal BLi04140 PF17763 Glutaminase/Asparaginase C-terminal domain BLi04141 PF01381 Helix-turn-helix BLi04142 PF10282 Lactonase, 7-bladed beta-propeller BLi04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi04146 PF00005 ABC transporter BLi04147 PF02687 FtsX-like permease family BLi04148 PF06486 Protein of unknown function (DUF1093) BLi04151 PF01522 Polysaccharide deacetylase BLi04154 PF07238 PilZ domain BLi04154 PF00535 Glycosyl transferase family 2 BLi04154 PF03552 Cellulose synthase BLi04155 PF03390 2-hydroxycarboxylate transporter family BLi04156 PF03009 Glycerophosphoryl diester phosphodiesterase family BLi04157 PF05901 Excalibur calcium-binding domain BLi04159 PF00884 Sulfatase BLi04160 PF17353 Family of unknown function (DUF5381) BLi04161 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BLi04161 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BLi04162 PF01316 Arginine repressor, DNA binding domain BLi04162 PF02863 Arginine repressor, C-terminal domain BLi04164 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BLi04164 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BLi04165 PF13520 Amino acid permease BLi04166 PF00696 Amino acid kinase family BLi04168 PF00232 Glycosyl hydrolase family 1 BLi04169 PF02378 Phosphotransferase system, EIIC BLi04171 PF08281 Sigma-70, region 4 BLi04171 PF04542 Sigma-70 region 2 BLi04172 PF04055 Radical SAM superfamily BLi04176 PF17862 AAA+ lid domain BLi04176 PF00004 ATPase family associated with various cellular activities (AAA) BLi04176 PF01434 Peptidase family M41 BLi04176 PF06480 FtsH Extracellular BLi04177 PF01546 Peptidase family M20/M25/M40 BLi04177 PF07687 Peptidase dimerisation domain BLi04178 PF08244 Glycosyl hydrolases family 32 C terminal BLi04178 PF00251 Glycosyl hydrolases family 32 N-terminal domain BLi04179 PF01306 LacY proton/sugar symporter BLi04180 PF00528 Binding-protein-dependent transport system inner membrane component BLi04181 PF00528 Binding-protein-dependent transport system inner membrane component BLi04183 PF00356 Bacterial regulatory proteins, lacI family BLi04187 PF01717 Cobalamin-independent synthase, Catalytic domain BLi04188 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BLi04189 PF00535 Glycosyl transferase family 2 BLi04190 PF01370 NAD dependent epimerase/dehydratase family BLi04195 PF07662 Na+ dependent nucleoside transporter C-terminus BLi04195 PF01773 Na+ dependent nucleoside transporter N-terminus BLi04199 PF00232 Glycosyl hydrolase family 1 BLi04200 PF02378 Phosphotransferase system, EIIC BLi04200 PF00367 phosphotransferase system, EIIB BLi04200 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BLi04201 PF03123 CAT RNA binding domain BLi04201 PF00874 PRD domain BLi04202 PF02361 Cobalt transport protein BLi04203 PF00005 ABC transporter BLi04204 PF09819 ABC-type cobalt transport system, permease component BLi04205 PF03070 TENA/THI-4/PQQC family BLi04207 PF00463 Isocitrate lyase family BLi04208 PF01274 Malate synthase BLi04209 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BLi04210 PF02687 FtsX-like permease family BLi04211 PF00005 ABC transporter BLi04212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi04213 PF00072 Response regulator receiver domain BLi04213 PF00486 Transcriptional regulatory protein, C terminal BLi04214 PF00232 Glycosyl hydrolase family 1 BLi04215 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BLi04215 PF00367 phosphotransferase system, EIIB BLi04215 PF02378 Phosphotransferase system, EIIC BLi04217 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BLi04220 PF04616 Glycosyl hydrolases family 43 BLi04220 PF16369 C-terminal lipocalin-like domain BLi04221 PF00270 DEAD/DEAH box helicase BLi04221 PF00271 Helicase conserved C-terminal domain BLi04221 PF03880 DbpA RNA binding domain BLi04227 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BLi04227 PF00591 Glycosyl transferase family, a/b domain BLi04227 PF02885 Glycosyl transferase family, helical bundle domain BLi04228 PF01773 Na+ dependent nucleoside transporter N-terminus BLi04228 PF07662 Na+ dependent nucleoside transporter C-terminus BLi04229 PF01791 DeoC/LacD family aldolase BLi04230 PF04198 Putative sugar-binding domain BLi04233 PF00990 Diguanylate cyclase, GGDEF domain BLi04234 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BLi04236 PF03170 Bacterial cellulose synthase subunit BLi04237 PF00155 Aminotransferase class I and II BLi04240 PF07478 D-ala D-ala ligase C-terminus BLi04242 PF01116 Fructose-bisphosphate aldolase class-II BLi04243 PF01261 Xylose isomerase-like TIM barrel BLi04244 PF01261 Xylose isomerase-like TIM barrel BLi04245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BLi04245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BLi04246 PF07690 Major Facilitator Superfamily BLi04247 PF01261 Xylose isomerase-like TIM barrel BLi04248 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BLi04248 PF00205 Thiamine pyrophosphate enzyme, central domain BLi04248 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BLi04249 PF00294 pfkB family carbohydrate kinase BLi04250 PF04962 KduI/IolB family BLi04251 PF00171 Aldehyde dehydrogenase family BLi04252 PF00455 DeoR C terminal sensor domain BLi04252 PF08220 DeoR-like helix-turn-helix domain BLi04253 PF00248 Aldo/keto reductase family BLi04254 PF03009 Glycerophosphoryl diester phosphodiesterase family BLi04255 PF07690 Major Facilitator Superfamily BLi04256 PF00183 Hsp90 protein BLi04257 PF00005 ABC transporter BLi04257 PF12848 ABC transporter BLi04262 PF01497 Periplasmic binding protein BLi04265 PF02421 Ferrous iron transport protein B BLi04265 PF17910 FeoB cytosolic helical domain BLi04265 PF07670 Nucleoside recognition BLi04265 PF07664 Ferrous iron transport protein B C terminus BLi04267 PF01757 Acyltransferase family BLi04268 PF02687 FtsX-like permease family BLi04269 PF00005 ABC transporter BLi04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi04271 PF00072 Response regulator receiver domain BLi04271 PF00486 Transcriptional regulatory protein, C terminal BLi04273 PF05227 CHASE3 domain BLi04273 PF00672 HAMP domain BLi04273 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BLi04274 PF01235 Sodium:alanine symporter family BLi04275 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BLi04275 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BLi04276 PF07745 Glycosyl hydrolase family 53 BLi04277 PF08533 Beta-galactosidase C-terminal domain BLi04277 PF02449 Beta-galactosidase BLi04277 PF08532 Beta-galactosidase trimerisation domain BLi04278 PF00528 Binding-protein-dependent transport system inner membrane component BLi04279 PF00528 Binding-protein-dependent transport system inner membrane component BLi04280 PF13416 Bacterial extracellular solute-binding protein BLi04281 PF00356 Bacterial regulatory proteins, lacI family BLi04282 PF00288 GHMP kinases N terminal domain BLi04282 PF08544 GHMP kinases C terminal BLi04282 PF10509 Galactokinase galactose-binding signature BLi04283 PF16363 GDP-mannose 4,6 dehydratase BLi04284 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BLi04284 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BLi04285 PF00480 ROK family BLi04285 PF01325 Iron dependent repressor, N-terminal DNA binding domain BLi04286 PF00392 Bacterial regulatory proteins, gntR family BLi04286 PF07729 FCD domain BLi04287 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BLi04287 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BLi04288 PF02447 GntP family permease BLi04289 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BLi04289 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BLi04290 PF00465 Iron-containing alcohol dehydrogenase BLi04290 PF00171 Aldehyde dehydrogenase family BLi04291 PF00578 AhpC/TSA family BLi04292 PF13192 Thioredoxin domain BLi04292 PF07992 Pyridine nucleotide-disulphide oxidoreductase BLi04298 PF00005 ABC transporter BLi04302 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi04302 PF07730 Histidine kinase BLi04303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi04303 PF07730 Histidine kinase BLi04304 PF00072 Response regulator receiver domain BLi04304 PF00196 Bacterial regulatory proteins, luxR family BLi04307 PF00027 Cyclic nucleotide-binding domain BLi04307 PF00005 ABC transporter BLi04315 PF18766 SWI2/SNF2 ATPase BLi04315 PF11867 Domain of unknown function (DUF3387) BLi04315 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BLi04318 PF02384 N-6 DNA Methylase BLi04318 PF12161 HsdM N-terminal domain BLi04323 PF07508 Recombinase BLi04323 PF13408 Recombinase zinc beta ribbon domain BLi04323 PF00239 Resolvase, N terminal domain BLi04324 PF02590 Predicted SPOUT methyltransferase BLi04325 PF14116 YyzF-like protein BLi04327 PF00583 Acetyltransferase (GNAT) family BLi04330 PF13180 PDZ domain BLi04331 PF00753 Metallo-beta-lactamase superfamily BLi04332 PF09648 YycH protein BLi04333 PF07435 YycH protein BLi04334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BLi04334 PF13426 PAS domain BLi04334 PF00512 His Kinase A (phospho-acceptor) domain BLi04334 PF00672 HAMP domain BLi04335 PF00486 Transcriptional regulatory protein, C terminal BLi04335 PF00072 Response regulator receiver domain BLi04340 PF00293 NUDIX domain BLi04341 PF00709 Adenylosuccinate synthetase BLi04343 PF03796 DnaB-like helicase C terminal domain BLi04343 PF00772 DnaB-like helicase N terminal domain BLi04344 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) BLi04346 PF14174 YycC-like protein BLi04347 PF07690 Major Facilitator Superfamily BLi04348 PF01979 Amidohydrolase family BLi04349 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BLi04351 PF01380 SIS domain BLi04352 PF02378 Phosphotransferase system, EIIC BLi04352 PF00367 phosphotransferase system, EIIB BLi04353 PF01281 Ribosomal protein L9, N-terminal domain BLi04353 PF03948 Ribosomal protein L9, C-terminal domain BLi04354 PF02272 DHHA1 domain BLi04354 PF01368 DHH family BLi04355 PF09991 Predicted membrane protein (DUF2232) BLi04357 PF07875 Coat F domain BLi04358 PF00582 Universal stress protein family BLi04359 PF01740 STAS domain BLi04359 PF00916 Sulfate permease family BLi04360 PF07690 Major Facilitator Superfamily BLi04361 PF01084 Ribosomal protein S18 BLi04362 PF00436 Single-strand binding protein family BLi04363 PF01250 Ribosomal protein S6 BLi04364 PF06071 Protein of unknown function (DUF933) BLi04364 PF01926 50S ribosome-binding GTPase BLi04365 PF06107 Bacterial protein of unknown function (DUF951) BLi04367 PF06866 Protein of unknown function (DUF1256) BLi04368 PF02195 ParB-like nuclease domain BLi04368 PF17762 HTH domain found in ParB protein BLi04369 PF13614 AAA domain BLi04370 PF02627 Carboxymuconolactone decarboxylase family BLi04372 PF17762 HTH domain found in ParB protein BLi04372 PF02195 ParB-like nuclease domain BLi04373 PF02527 rRNA small subunit methyltransferase G BLi04374 PF13932 GidA associated domain BLi04374 PF01134 Glucose inhibited division protein A BLi04375 PF01926 50S ribosome-binding GTPase BLi04375 PF12631 MnmE helical domain BLi04375 PF10396 GTP-binding protein TrmE N-terminus BLi04376 PF14804 Jag N-terminus BLi04376 PF01424 R3H domain BLi04377 PF02096 60Kd inner membrane protein BLi04378 PF00825 Ribonuclease P BLi04379 PF00468 Ribosomal protein L34 BLi05000 PF02595 Glycerate kinase family BLi05001 PF10764 Inhibitor of sigma-G Gin BLi05002 PF03190 Protein of unknown function, DUF255 BLi05003 PF01235 Sodium:alanine symporter family BLi05013 PF03741 Integral membrane protein TerC family BLi05028 PF11122 Inner spore coat protein D BLi05035 PF11122 Inner spore coat protein D BLi05042 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) BLi05048 PF07098 Protein of unknown function (DUF1360) BLi05053 PF13056 Protein of unknown function (DUF3918) BLi05054 PF07561 Domain of Unknown Function (DUF1540) BLi05056 PF13790 SR1 protein BLi05058 PF09501 Probable sporulation protein (Bac_small_yrzI)