BLi00001 SM00382 ATPases associated with a variety of cellular activities BLi00001 SM00760 Bacterial dnaA protein helix-turn-helix domain BLi00002 SM00480 DNA polymerase III beta subunit BLi00006 SM00387 Histidine kinase-like ATPases BLi00006 SM00433 TopoisomeraseII BLi00007 SM00434 DNA Topoisomerase IV BLi00014 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi00014 SM01240 BLi00014 BLi00015 SM00936 Penicillin-binding protein 5, C-terminal domain BLi00021 SM00860 SMI1 / KNR4 family BLi00025 SM00257 Lysin motif BLi00025 SM00636 BLi00025 BLi00028 SM00382 ATPases associated with a variety of cellular activities BLi00030 SM00493 BLi00030 BLi00048 SM00465 GIY-YIG type nucleases (URI domain) BLi00050 SM00966 SpoVT / AbrB like domain BLi00053 SM01208 BLi00053 BLi00054 SM00493 BLi00054 BLi00055 SM00650 Ribosomal RNA adenine dimethylases BLi00064 SM01400 BLi00064 BLi00068 SM00487 DEAD-like helicases superfamily BLi00068 SM00490 helicase superfamily c-terminal domain BLi00068 SM00982 BLi00068 BLi00068 SM01058 CarD-like/TRCF domain BLi00069 SM00966 SpoVT / AbrB like domain BLi00072 SM00363 S4 RNA-binding domain BLi00076 SM00316 Ribosomal protein S1-like RNA-binding domain BLi00080 SM00331 Sigma factor PP2C-like phosphatases BLi00080 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BLi00082 SM00220 Serine/Threonine protein kinases, catalytic domain BLi00083 SM00977 TilS substrate C-terminal domain BLi00085 SM00382 ATPases associated with a variety of cellular activities BLi00094 SM00905 Dihydroneopterin aldolase BLi00104 SM00382 ATPases associated with a variety of cellular activities BLi00104 SM01086 C-terminal, D2-small domain, of ClpB protein BLi00105 SM00382 ATPases associated with a variety of cellular activities BLi00107 SM00670 Large family of predicted nucleotide-binding domains BLi00112 SM00840 BLi00112 BLi00113 SM00535 Ribonuclease III family BLi00114 SM00967 RNA 2'-O ribose methyltransferase substrate binding BLi00119 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BLi00119 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BLi00120 SM00649 Ribosomal protein L11/L12 BLi00126 SM00663 RNA polymerase I subunit A N-terminus BLi00130 SM00838 Elongation factor G C-terminus BLi00130 SM00889 Elongation factor G, domain IV BLi00132 SM01403 BLi00132 BLi00136 SM01382 BLi00136 BLi00136 SM01383 BLi00136 BLi00139 SM00322 K homology RNA-binding domain BLi00143 SM01374 BLi00143 BLi00144 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BLi00157 SM00316 Ribosomal protein S1-like RNA-binding domain BLi00161 SM00662 RNA polymerases D BLi00163 SM00382 ATPases associated with a variety of cellular activities BLi00164 SM00382 ATPases associated with a variety of cellular activities BLi00171 SM00646 BLi00171 BLi00174 SM01251 BLi00174 BLi00207 SM00382 ATPases associated with a variety of cellular activities BLi00208 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi00209 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BLi00213 SM00382 ATPases associated with a variety of cellular activities BLi00224 SM00448 cheY-homologous receiver domain BLi00225 SM00091 PAS domain BLi00225 SM00387 Histidine kinase-like ATPases BLi00234 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BLi00239 SM01091 Transporter associated domain BLi00256 SM00530 Helix-turn-helix XRE-family like proteins BLi00257 SM00421 helix_turn_helix, Lux Regulon BLi00259 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi00259 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi00269 SM00422 helix_turn_helix, mercury resistance BLi00275 SM00387 Histidine kinase-like ATPases BLi00276 SM00448 cheY-homologous receiver domain BLi00284 SM01130 BLi00284 BLi00287 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BLi00288 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi00288 SM00895 BLi00288 BLi00289 SM00858 BLi00289 BLi00292 SM00387 Histidine kinase-like ATPases BLi00292 SM00388 His Kinase A (phosphoacceptor) domain BLi00293 SM00382 ATPases associated with a variety of cellular activities BLi00299 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi00301 SM00093 SERine Proteinase INhibitors BLi00304 SM00422 helix_turn_helix, mercury resistance BLi00312 SM00382 ATPases associated with a variety of cellular activities BLi00315 SM00448 cheY-homologous receiver domain BLi00315 SM00862 Transcriptional regulatory protein, C terminal BLi00316 SM00387 Histidine kinase-like ATPases BLi00316 SM00388 His Kinase A (phosphoacceptor) domain BLi00319 SM00822 BLi00319 BLi00336 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi00336 SM00866 BLi00336 BLi00338 SM00060 Fibronectin type 3 domain BLi00338 SM00495 Chitin-binding domain type 3 BLi00338 SM00636 BLi00338 BLi00339 SM00636 BLi00339 BLi00344 SM00450 Rhodanese Homology Domain BLi00349 SM00382 ATPases associated with a variety of cellular activities BLi00364 SM00422 helix_turn_helix, mercury resistance BLi00380 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi00384 SM00062 Bacterial periplasmic substrate-binding proteins BLi00386 SM00382 ATPases associated with a variety of cellular activities BLi00391 SM00219 Tyrosine kinase, catalytic domain BLi00398 SM00382 ATPases associated with a variety of cellular activities BLi00401 SM00823 Phosphopantetheine attachment site BLi00402 SM00823 Phosphopantetheine attachment site BLi00403 SM00823 Phosphopantetheine attachment site BLi00406 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi00412 SM00382 ATPases associated with a variety of cellular activities BLi00417 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi00417 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi00418 SM00382 ATPases associated with a variety of cellular activities BLi00420 SM00062 Bacterial periplasmic substrate-binding proteins BLi00421 SM00382 ATPases associated with a variety of cellular activities BLi00440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi00440 SM00387 Histidine kinase-like ATPases BLi00441 SM00342 helix_turn_helix, arabinose operon control protein BLi00441 SM00448 cheY-homologous receiver domain BLi00443 SM00382 ATPases associated with a variety of cellular activities BLi00446 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi00451 SM00710 Parallel beta-helix repeats BLi00456 SM00422 helix_turn_helix, mercury resistance BLi00457 SM00382 ATPases associated with a variety of cellular activities BLi00459 SM00448 cheY-homologous receiver domain BLi00459 SM00862 Transcriptional regulatory protein, C terminal BLi00460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi00460 SM00387 Histidine kinase-like ATPases BLi00460 SM00388 His Kinase A (phosphoacceptor) domain BLi00461 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi00461 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi00465 SM00382 ATPases associated with a variety of cellular activities BLi00472 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BLi00473 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi00481 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi00483 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BLi00487 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi00487 SM00895 BLi00487 BLi00496 SM00861 Transketolase, pyrimidine binding domain BLi00501 SM00796 Allophanate hydrolase subunit 1 BLi00502 SM00797 Allophanate hydrolase subunit 2 BLi00503 SM00346 helix_turn_helix isocitrate lyase regulation BLi00517 SM00344 helix_turn_helix ASNC type BLi00518 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BLi00518 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BLi00518 SM00493 BLi00518 BLi00537 SM00382 ATPases associated with a variety of cellular activities BLi00546 SM00487 DEAD-like helicases superfamily BLi00546 SM00490 helicase superfamily c-terminal domain BLi00551 SM01005 Alanine racemase, C-terminal domain BLi00556 SM00387 Histidine kinase-like ATPases BLi00557 SM00331 Sigma factor PP2C-like phosphatases BLi00559 SM00387 Histidine kinase-like ATPases BLi00561 SM00331 Sigma factor PP2C-like phosphatases BLi00562 SM00316 Ribosomal protein S1-like RNA-binding domain BLi00562 SM00732 Likely ribonuclease with RNase H fold. BLi00565 SM00731 SprT homologues. BLi00575 SM00530 Helix-turn-helix XRE-family like proteins BLi00578 SM00357 Cold shock protein domain BLi00581 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi00599 SM00387 Histidine kinase-like ATPases BLi00599 SM00388 His Kinase A (phosphoacceptor) domain BLi00599 SM00448 cheY-homologous receiver domain BLi00600 SM00448 cheY-homologous receiver domain BLi00600 SM00862 Transcriptional regulatory protein, C terminal BLi00616 SM00382 ATPases associated with a variety of cellular activities BLi00618 SM00881 CoA binding domain BLi00623 SM00883 Chaperonin 10 Kd subunit BLi00647 SM00530 Helix-turn-helix XRE-family like proteins BLi00652 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi00656 SM00642 Alpha-amylase domain BLi00657 SM00354 helix_turn _helix lactose operon repressor BLi00658 SM00642 Alpha-amylase domain BLi00664 SM00642 Alpha-amylase domain BLi00666 SM00363 S4 RNA-binding domain BLi00667 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi00678 SM00342 helix_turn_helix, arabinose operon control protein BLi00678 SM00871 Bacterial transcription activator, effector binding domain BLi00685 SM00460 Transglutaminase/protease-like homologues BLi00693 SM01001 AIR carboxylase BLi00695 SM00998 Adenylosuccinate lyase C-terminus BLi00698 SM01211 BLi00698 BLi00703 SM00798 AICARFT/IMPCHase bienzyme BLi00703 SM00851 MGS-like domain BLi00704 SM01209 BLi00704 BLi00704 SM01210 BLi00704 BLi00716 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BLi00716 SM00292 breast cancer carboxy-terminal domain BLi00716 SM00532 Ligase N family BLi00732 SM00845 GatB domain BLi00741 SM00046 Diacylglycerol kinase catalytic domain (presumed) BLi00746 SM00487 DEAD-like helicases superfamily BLi00750 SM01061 CAT RNA binding domain BLi00751 SM00028 Tetratricopeptide repeats BLi00755 SM00530 Helix-turn-helix XRE-family like proteins BLi00758 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi00760 SM00382 ATPases associated with a variety of cellular activities BLi00765 SM00833 Cobalamin synthesis protein cobW C-terminal domain BLi00770 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi00770 SM00876 Biotin and Thiamin Synthesis associated domain BLi00773 SM00422 helix_turn_helix, mercury resistance BLi00775 SM00382 ATPases associated with a variety of cellular activities BLi00776 SM00487 DEAD-like helicases superfamily BLi00776 SM00490 helicase superfamily c-terminal domain BLi00777 SM00829 Enoylreductase BLi00782 SM00849 Metallo-beta-lactamase superfamily BLi00783 SM00849 Metallo-beta-lactamase superfamily BLi00784 SM00631 BLi00784 BLi00787 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BLi00797 SM00642 Alpha-amylase domain BLi00798 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi00798 SM00866 BLi00798 BLi00807 SM00028 Tetratricopeptide repeats BLi00810 SM00984 UDP binding domain BLi00818 SM00226 Low molecular weight phosphatase family BLi00831 SM00478 endonuclease III BLi00843 SM01061 CAT RNA binding domain BLi00850 SM00861 Transketolase, pyrimidine binding domain BLi00853 SM00382 ATPases associated with a variety of cellular activities BLi00865 SM00342 helix_turn_helix, arabinose operon control protein BLi00885 SM00478 endonuclease III BLi00885 SM00525 BLi00885 BLi00891 SM00382 ATPases associated with a variety of cellular activities BLi00892 SM00382 ATPases associated with a variety of cellular activities BLi00893 SM00382 ATPases associated with a variety of cellular activities BLi00936 SM00028 Tetratricopeptide repeats BLi00941 SM00382 ATPases associated with a variety of cellular activities BLi00942 SM00062 Bacterial periplasmic substrate-binding proteins BLi00946 SM00530 Helix-turn-helix XRE-family like proteins BLi00948 SM00382 ATPases associated with a variety of cellular activities BLi00955 SM00567 E-Z type HEAT repeats BLi00962 SM00763 PrkA AAA domain BLi00969 SM00382 ATPases associated with a variety of cellular activities BLi00971 SM00357 Cold shock protein domain BLi00972 SM00382 ATPases associated with a variety of cellular activities BLi00972 SM00930 BLi00972 BLi00981 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BLi00981 SM00091 PAS domain BLi00981 SM00387 Histidine kinase-like ATPases BLi00981 SM00388 His Kinase A (phosphoacceptor) domain BLi00982 SM00318 Staphylococcal nuclease homologues BLi00986 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi00989 SM00382 ATPases associated with a variety of cellular activities BLi00992 SM00829 Enoylreductase BLi00999 SM00530 Helix-turn-helix XRE-family like proteins BLi01000 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BLi01000 SM00387 Histidine kinase-like ATPases BLi01001 SM00421 helix_turn_helix, Lux Regulon BLi01001 SM00448 cheY-homologous receiver domain BLi01008 SM00257 Lysin motif BLi01015 SM00342 helix_turn_helix, arabinose operon control protein BLi01015 SM00871 Bacterial transcription activator, effector binding domain BLi01016 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi01022 SM00563 Phosphate acyltransferases BLi01026 SM01091 Transporter associated domain BLi01027 SM00422 helix_turn_helix, mercury resistance BLi01028 SM01091 Transporter associated domain BLi01031 SM00646 BLi01031 BLi01047 SM00382 ATPases associated with a variety of cellular activities BLi01048 SM00382 ATPases associated with a variety of cellular activities BLi01052 SM00382 ATPases associated with a variety of cellular activities BLi01061 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi01063 SM00028 Tetratricopeptide repeats BLi01066 SM00382 ATPases associated with a variety of cellular activities BLi01070 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi01078 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi01085 SM00382 ATPases associated with a variety of cellular activities BLi01101 SM00849 Metallo-beta-lactamase superfamily BLi01105 SM00530 Helix-turn-helix XRE-family like proteins BLi01114 SM00855 Phosphoglycerate mutase family BLi01115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi01118 SM00914 BLi01118 BLi01139 SM00354 helix_turn _helix lactose operon repressor BLi01151 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi01151 SM00387 Histidine kinase-like ATPases BLi01151 SM00388 His Kinase A (phosphoacceptor) domain BLi01152 SM00448 cheY-homologous receiver domain BLi01152 SM00862 Transcriptional regulatory protein, C terminal BLi01176 SM00938 Nitrogen regulatory protein P-II BLi01178 SM00342 helix_turn_helix, arabinose operon control protein BLi01180 SM00354 helix_turn _helix lactose operon repressor BLi01186 SM01006 Siderophore biosynthesis protein domain BLi01191 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi01192 SM01018 B12 binding domain BLi01195 SM00316 Ribosomal protein S1-like RNA-binding domain BLi01200 SM01240 BLi01200 BLi01206 SM00859 Semialdehyde dehydrogenase, NAD binding domain BLi01210 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BLi01211 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BLi01222 SM00825 Beta-ketoacyl synthase BLi01224 SM00382 ATPases associated with a variety of cellular activities BLi01225 SM00382 ATPases associated with a variety of cellular activities BLi01235 SM00382 ATPases associated with a variety of cellular activities BLi01236 SM00382 ATPases associated with a variety of cellular activities BLi01244 SM00448 cheY-homologous receiver domain BLi01245 SM00091 PAS domain BLi01245 SM00387 Histidine kinase-like ATPases BLi01252 SM01118 BLi01252 BLi01254 SM00954 Region found in RelA / SpoT proteins BLi01292 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi01298 SM01266 BLi01298 BLi01309 SM00257 Lysin motif BLi01318 SM00530 Helix-turn-helix XRE-family like proteins BLi01319 SM00530 Helix-turn-helix XRE-family like proteins BLi01322 SM00382 ATPases associated with a variety of cellular activities BLi01342 SM00257 Lysin motif BLi01353 SM00644 BLi01353 BLi01354 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi01354 SM00895 BLi01354 BLi01355 SM00829 Enoylreductase BLi01366 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi01366 SM00387 Histidine kinase-like ATPases BLi01367 SM00342 helix_turn_helix, arabinose operon control protein BLi01367 SM00448 cheY-homologous receiver domain BLi01372 SM00342 helix_turn_helix, arabinose operon control protein BLi01390 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi01395 SM00382 ATPases associated with a variety of cellular activities BLi01398 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BLi01400 SM00382 ATPases associated with a variety of cellular activities BLi01404 SM00656 BLi01404 BLi01412 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BLi01415 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi01419 SM00855 Phosphoglycerate mutase family BLi01426 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi01426 SM00924 MgtE intracellular N domain BLi01433 SM00530 Helix-turn-helix XRE-family like proteins BLi01443 SM00382 ATPases associated with a variety of cellular activities BLi01446 SM00914 BLi01446 BLi01486 SM00257 Lysin motif BLi01486 SM00641 Glycosyl hydrolases family 25 BLi01490 SM00422 helix_turn_helix, mercury resistance BLi01493 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi01495 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BLi01496 SM00267 diguanylate cyclase BLi01509 SM00091 PAS domain BLi01509 SM00387 Histidine kinase-like ATPases BLi01509 SM00388 His Kinase A (phosphoacceptor) domain BLi01516 SM01007 Class II Aldolase and Adducin N-terminal domain BLi01521 SM00387 Histidine kinase-like ATPases BLi01521 SM00388 His Kinase A (phosphoacceptor) domain BLi01522 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi01525 SM00382 ATPases associated with a variety of cellular activities BLi01525 SM01086 C-terminal, D2-small domain, of ClpB protein BLi01552 SM00635 Bacterial Ig-like domain 2 BLi01557 SM00060 Fibronectin type 3 domain BLi01562 SM00710 Parallel beta-helix repeats BLi01568 SM00257 Lysin motif BLi01568 SM00644 BLi01568 BLi01571 SM00530 Helix-turn-helix XRE-family like proteins BLi01577 SM00028 Tetratricopeptide repeats BLi01580 SM00530 Helix-turn-helix XRE-family like proteins BLi01596 SM00354 helix_turn _helix lactose operon repressor BLi01597 SM01061 CAT RNA binding domain BLi01604 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi01604 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi01609 SM00091 PAS domain BLi01609 SM00387 Histidine kinase-like ATPases BLi01609 SM00388 His Kinase A (phosphoacceptor) domain BLi01614 SM00260 Two component signalling adaptor domain BLi01614 SM00448 cheY-homologous receiver domain BLi01617 SM00257 Lysin motif BLi01621 SM00052 Putative diguanylate phosphodiesterase BLi01641 SM00852 Probable molybdopterin binding domain BLi01646 SM00382 ATPases associated with a variety of cellular activities BLi01647 SM00382 ATPases associated with a variety of cellular activities BLi01650 SM00382 ATPases associated with a variety of cellular activities BLi01651 SM01066 Carbohydrate binding domain BLi01652 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi01652 SM01134 BLi01652 BLi01658 SM00382 ATPases associated with a variety of cellular activities BLi01664 SM00966 SpoVT / AbrB like domain BLi01665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BLi01665 SM00091 PAS domain BLi01665 SM00387 Histidine kinase-like ATPases BLi01665 SM00388 His Kinase A (phosphoacceptor) domain BLi01668 SM00849 Metallo-beta-lactamase superfamily BLi01675 SM00861 Transketolase, pyrimidine binding domain BLi01692 SM00838 Elongation factor G C-terminus BLi01694 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi01698 SM00670 Large family of predicted nucleotide-binding domains BLi01703 SM00878 Biotin carboxylase C-terminal domain BLi01712 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi01722 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi01733 SM00740 BLi01733 BLi01734 SM00740 BLi01734 BLi01745 SM00842 Cell division protein FtsA BLi01746 SM00864 Tubulin/FtsZ family, GTPase domain BLi01746 SM00865 Tubulin/FtsZ family, C-terminal domain BLi01752 SM00382 ATPases associated with a variety of cellular activities BLi01760 SM00363 S4 RNA-binding domain BLi01766 SM00363 S4 RNA-binding domain BLi01771 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BLi01772 SM00851 MGS-like domain BLi01772 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BLi01775 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BLi01786 SM00831 Cation transporter/ATPase, N-terminus BLi01789 SM00072 Guanylate kinase homologues. BLi01790 SM01409 BLi01790 BLi01792 SM00487 DEAD-like helicases superfamily BLi01792 SM00490 helicase superfamily c-terminal domain BLi01797 SM00331 Sigma factor PP2C-like phosphatases BLi01797 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BLi01798 SM00220 Serine/Threonine protein kinases, catalytic domain BLi01798 SM00740 BLi01798 BLi01801 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BLi01805 SM01120 BLi01805 BLi01805 SM01121 BLi01805 BLi01808 SM00487 DEAD-like helicases superfamily BLi01808 SM00490 helicase superfamily c-terminal domain BLi01811 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BLi01812 SM00822 BLi01812 BLi01814 SM00358 Double-stranded RNA binding motif BLi01814 SM00535 Ribonuclease III family BLi01815 SM00968 SMC proteins Flexible Hinge Domain BLi01816 SM00382 ATPases associated with a variety of cellular activities BLi01816 SM00962 SRP54-type protein, GTPase domain BLi01816 SM00963 SRP54-type protein, helical bundle domain BLi01818 SM00382 ATPases associated with a variety of cellular activities BLi01818 SM00962 SRP54-type protein, GTPase domain BLi01818 SM00963 SRP54-type protein, helical bundle domain BLi01830 SM00881 CoA binding domain BLi01832 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BLi01832 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BLi01832 SM00493 BLi01832 BLi01836 SM00382 ATPases associated with a variety of cellular activities BLi01836 SM01086 C-terminal, D2-small domain, of ClpB protein BLi01844 SM00382 ATPases associated with a variety of cellular activities BLi01854 SM00448 cheY-homologous receiver domain BLi01861 SM00382 ATPases associated with a variety of cellular activities BLi01861 SM00962 SRP54-type protein, GTPase domain BLi01863 SM00448 cheY-homologous receiver domain BLi01864 SM00073 Histidine Phosphotransfer domain BLi01864 SM00260 Two component signalling adaptor domain BLi01864 SM00387 Histidine kinase-like ATPases BLi01864 SM01231 BLi01864 BLi01865 SM00260 Two component signalling adaptor domain BLi01877 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi01879 SM00479 BLi01879 BLi01879 SM00481 DNA polymerase alpha chain like domain BLi01880 SM01067 Cellulose binding domain BLi01885 SM00316 Ribosomal protein S1-like RNA-binding domain BLi01885 SM00322 K homology RNA-binding domain BLi01892 SM00904 Riboflavin kinase BLi01893 SM01387 BLi01893 BLi01894 SM00316 Ribosomal protein S1-like RNA-binding domain BLi01894 SM00322 K homology RNA-binding domain BLi01900 SM00859 Semialdehyde dehydrogenase, NAD binding domain BLi01902 SM01130 BLi01902 BLi01903 SM00849 Metallo-beta-lactamase superfamily BLi01906 SM00382 ATPases associated with a variety of cellular activities BLi01906 SM00843 BLi01906 BLi01907 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi01907 SM00866 BLi01907 BLi01915 SM00530 Helix-turn-helix XRE-family like proteins BLi01917 SM00852 Probable molybdopterin binding domain BLi01918 SM00382 ATPases associated with a variety of cellular activities BLi01919 SM00322 K homology RNA-binding domain BLi01919 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi01923 SM00829 Enoylreductase BLi01925 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi01928 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BLi01928 SM00534 ATPase domain of DNA mismatch repair MUTS family BLi01929 SM00853 MutL C terminal dimerisation domain BLi01929 SM01340 BLi01929 BLi01933 SM00833 Cobalamin synthesis protein cobW C-terminal domain BLi01952 SM00257 Lysin motif BLi01952 SM00636 BLi01952 BLi01969 SM00849 Metallo-beta-lactamase superfamily BLi01972 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi01972 SM00895 BLi01972 BLi01974 SM00646 BLi01974 BLi01989 SM00382 ATPases associated with a variety of cellular activities BLi01992 SM00422 helix_turn_helix, mercury resistance BLi01993 SM01230 BLi01993 BLi02022 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi02025 SM00903 Flavin reductase like domain BLi02033 SM00257 Lysin motif BLi02034 SM00857 Resolvase, N terminal domain BLi02036 SM00861 Transketolase, pyrimidine binding domain BLi02041 SM00448 cheY-homologous receiver domain BLi02057 SM01207 BLi02057 BLi02058 SM00881 CoA binding domain BLi02059 SM00387 Histidine kinase-like ATPases BLi02059 SM00433 TopoisomeraseII BLi02060 SM00434 DNA Topoisomerase IV BLi02061 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi02063 SM01007 Class II Aldolase and Adducin N-terminal domain BLi02074 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BLi02077 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi02080 SM00100 Cyclic nucleotide-monophosphate binding domain BLi02080 SM00419 helix_turn_helix, cAMP Regulatory protein BLi02083 SM00100 Cyclic nucleotide-monophosphate binding domain BLi02083 SM00419 helix_turn_helix, cAMP Regulatory protein BLi02088 SM01067 Cellulose binding domain BLi02095 SM00710 Parallel beta-helix repeats BLi02095 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BLi02097 SM00829 Enoylreductase BLi02098 SM00422 helix_turn_helix, mercury resistance BLi02113 SM00382 ATPases associated with a variety of cellular activities BLi02114 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi02121 SM00354 helix_turn _helix lactose operon repressor BLi02122 SM00226 Low molecular weight phosphatase family BLi02124 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BLi02143 SM00878 Biotin carboxylase C-terminal domain BLi02149 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BLi02157 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BLi02167 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi02167 SM00529 Helix-turn-helix diphteria tox regulatory element BLi02168 SM00382 ATPases associated with a variety of cellular activities BLi02169 SM00382 ATPases associated with a variety of cellular activities BLi02171 SM00822 BLi02171 BLi02174 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BLi02175 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi02182 SM00382 ATPases associated with a variety of cellular activities BLi02183 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi02183 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi02183 SM00319 Homologues of the ligand binding domain of Tar BLi02188 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi02195 SM00849 Metallo-beta-lactamase superfamily BLi02196 SM00871 Bacterial transcription activator, effector binding domain BLi02201 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BLi02202 SM00849 Metallo-beta-lactamase superfamily BLi02213 SM00257 Lysin motif BLi02214 SM00341 Helicase and RNase D C-terminal BLi02214 SM00487 DEAD-like helicases superfamily BLi02214 SM00490 helicase superfamily c-terminal domain BLi02214 SM00956 BLi02214 BLi02222 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BLi02222 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BLi02232 SM00860 SMI1 / KNR4 family BLi02260 SM00861 Transketolase, pyrimidine binding domain BLi02261 SM00327 von Willebrand factor (vWF) type A domain BLi02262 SM00382 ATPases associated with a variety of cellular activities BLi02264 SM00257 Lysin motif BLi02273 SM00822 BLi02273 BLi02281 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi02281 SM00245 tail specific protease BLi02289 SM00014 Acid phosphatase homologues BLi02297 SM00882 Coenzyme A transferase BLi02298 SM00882 Coenzyme A transferase BLi02304 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi02306 SM00267 diguanylate cyclase BLi02316 SM00382 ATPases associated with a variety of cellular activities BLi02325 SM00567 E-Z type HEAT repeats BLi02325 SM00932 Scaffold protein Nfu/NifU N terminal BLi02326 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi02332 SM00357 Cold shock protein domain BLi02340 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BLi02340 SM00475 5'-3' exonuclease BLi02350 SM00491 BLi02350 BLi02353 SM00981 BLi02353 BLi02358 SM00487 DEAD-like helicases superfamily BLi02358 SM00490 helicase superfamily c-terminal domain BLi02367 SM00060 Fibronectin type 3 domain BLi02369 SM00478 endonuclease III BLi02369 SM00525 BLi02369 BLi02375 SM00479 BLi02375 BLi02375 SM00487 DEAD-like helicases superfamily BLi02375 SM00491 BLi02375 BLi02383 SM00851 MGS-like domain BLi02393 SM00914 BLi02393 BLi02394 SM00028 Tetratricopeptide repeats BLi02407 SM00138 Methyltransferase, chemotaxis proteins BLi02408 SM00562 BLi02408 BLi02414 SM00411 bacterial (prokaryotic) histone like domain BLi02426 SM01240 BLi02426 BLi02427 SM00316 Ribosomal protein S1-like RNA-binding domain BLi02433 SM00870 BLi02433 BLi02435 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BLi02439 SM00257 Lysin motif BLi02441 SM00487 DEAD-like helicases superfamily BLi02441 SM00490 helicase superfamily c-terminal domain BLi02447 SM00257 Lysin motif BLi02454 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi02454 SM00387 Histidine kinase-like ATPases BLi02454 SM00388 His Kinase A (phosphoacceptor) domain BLi02455 SM00448 cheY-homologous receiver domain BLi02455 SM00862 Transcriptional regulatory protein, C terminal BLi02456 SM00091 PAS domain BLi02456 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi02456 SM00387 Histidine kinase-like ATPases BLi02456 SM00388 His Kinase A (phosphoacceptor) domain BLi02458 SM00448 cheY-homologous receiver domain BLi02458 SM00862 Transcriptional regulatory protein, C terminal BLi02462 SM00363 S4 RNA-binding domain BLi02465 SM00936 Penicillin-binding protein 5, C-terminal domain BLi02480 SM00028 Tetratricopeptide repeats BLi02496 SM00387 Histidine kinase-like ATPases BLi02498 SM00936 Penicillin-binding protein 5, C-terminal domain BLi02522 SM00704 CDGSH-type zinc finger. Function unknown. BLi02530 SM00382 ATPases associated with a variety of cellular activities BLi02531 SM00382 ATPases associated with a variety of cellular activities BLi02542 SM00382 ATPases associated with a variety of cellular activities BLi02548 SM00849 Metallo-beta-lactamase superfamily BLi02559 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi02559 SM00866 BLi02559 BLi02565 SM00098 Alkaline phosphatase homologues BLi02567 SM01350 BLi02567 BLi02574 SM00382 ATPases associated with a variety of cellular activities BLi02579 SM00046 Diacylglycerol kinase catalytic domain (presumed) BLi02581 SM00861 Transketolase, pyrimidine binding domain BLi02585 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BLi02587 SM00091 PAS domain BLi02587 SM00382 ATPases associated with a variety of cellular activities BLi02590 SM00646 BLi02590 BLi02593 SM00448 cheY-homologous receiver domain BLi02594 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi02597 SM00363 S4 RNA-binding domain BLi02598 SM00861 Transketolase, pyrimidine binding domain BLi02605 SM00878 Biotin carboxylase C-terminal domain BLi02614 SM00382 ATPases associated with a variety of cellular activities BLi02616 SM00841 Elongation factor P, C-terminal BLi02616 SM01185 BLi02616 BLi02623 SM00529 Helix-turn-helix diphteria tox regulatory element BLi02625 SM00450 Rhodanese Homology Domain BLi02628 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi02628 SM00382 ATPases associated with a variety of cellular activities BLi02633 SM00487 DEAD-like helicases superfamily BLi02633 SM00490 helicase superfamily c-terminal domain BLi02636 SM00530 Helix-turn-helix XRE-family like proteins BLi02648 SM00382 ATPases associated with a variety of cellular activities BLi02653 SM00849 Metallo-beta-lactamase superfamily BLi02657 SM00631 BLi02657 BLi02664 SM00028 Tetratricopeptide repeats BLi02672 SM00382 ATPases associated with a variety of cellular activities BLi02673 SM00382 ATPases associated with a variety of cellular activities BLi02688 SM00382 ATPases associated with a variety of cellular activities BLi02692 SM00518 AP endonuclease family 2 BLi02693 SM00487 DEAD-like helicases superfamily BLi02693 SM00490 helicase superfamily c-terminal domain BLi02713 SM00400 zinc finger BLi02713 SM00493 BLi02713 BLi02716 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi02724 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi02734 SM01133 BLi02734 BLi02735 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi02738 SM00271 DnaJ molecular chaperone homology domain BLi02742 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi02743 SM00838 Elongation factor G C-terminus BLi02750 SM00849 Metallo-beta-lactamase superfamily BLi02752 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BLi02756 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi02758 SM01103 BLi02758 BLi02766 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BLi02766 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BLi02774 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BLi02775 SM01119 BLi02775 BLi02783 SM00903 Flavin reductase like domain BLi02784 SM00422 helix_turn_helix, mercury resistance BLi02785 SM00450 Rhodanese Homology Domain BLi02785 SM00849 Metallo-beta-lactamase superfamily BLi02787 SM00421 helix_turn_helix, Lux Regulon BLi02787 SM00448 cheY-homologous receiver domain BLi02788 SM00387 Histidine kinase-like ATPases BLi02792 SM00450 Rhodanese Homology Domain BLi02792 SM00849 Metallo-beta-lactamase superfamily BLi02793 SM00450 Rhodanese Homology Domain BLi02802 SM01234 BLi02802 BLi02803 SM01004 Delta-aminolevulinic acid dehydratase BLi02805 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BLi02809 SM00421 helix_turn_helix, Lux Regulon BLi02809 SM00448 cheY-homologous receiver domain BLi02814 SM00382 ATPases associated with a variety of cellular activities BLi02815 SM00382 ATPases associated with a variety of cellular activities BLi02816 SM00422 helix_turn_helix, mercury resistance BLi02818 SM00342 helix_turn_helix, arabinose operon control protein BLi02820 SM00014 Acid phosphatase homologues BLi02827 SM00640 Glycosyl hydrolases family 32 BLi02832 SM00382 ATPases associated with a variety of cellular activities BLi02835 SM01059 Chloramphenicol acetyltransferase BLi02836 SM00342 helix_turn_helix, arabinose operon control protein BLi02856 SM00650 Ribosomal RNA adenine dimethylases BLi02867 SM00732 Likely ribonuclease with RNase H fold. BLi02869 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BLi02873 SM00382 ATPases associated with a variety of cellular activities BLi02874 SM00028 Tetratricopeptide repeats BLi02878 SM00382 ATPases associated with a variety of cellular activities BLi02884 SM00287 Bacterial SH3 domain homologues BLi02884 SM00646 BLi02884 BLi02887 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi02887 SM00954 Region found in RelA / SpoT proteins BLi02896 SM01323 BLi02896 BLi02900 SM00382 ATPases associated with a variety of cellular activities BLi02901 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BLi02911 SM00257 Lysin motif BLi02920 SM01317 BLi02920 BLi02927 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BLi02941 SM00257 Lysin motif BLi02943 SM01004 Delta-aminolevulinic acid dehydratase BLi02950 SM00382 ATPases associated with a variety of cellular activities BLi02950 SM00464 Found in ATP-dependent protease La (LON) BLi02951 SM00382 ATPases associated with a variety of cellular activities BLi02952 SM00382 ATPases associated with a variety of cellular activities BLi02952 SM00994 ClpX C4-type zinc finger BLi02952 SM01086 C-terminal, D2-small domain, of ClpB protein BLi02957 SM01329 BLi02957 BLi02958 SM00917 LeuA allosteric (dimerisation) domain BLi02964 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BLi02978 SM00028 Tetratricopeptide repeats BLi02986 SM00909 Sporulation and spore germination BLi02988 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi02989 SM00421 helix_turn_helix, Lux Regulon BLi02997 SM00465 GIY-YIG type nucleases (URI domain) BLi02999 SM00893 Electron transfer flavoprotein domain BLi03000 SM00893 Electron transfer flavoprotein domain BLi03005 SM00463 Small MutS-related domain BLi03005 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BLi03005 SM00534 ATPase domain of DNA mismatch repair MUTS family BLi03006 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BLi03006 SM00481 DNA polymerase alpha chain like domain BLi03006 SM00483 DNA polymerase X family BLi03013 SM00382 ATPases associated with a variety of cellular activities BLi03015 SM00873 B3/4 domain BLi03015 SM00874 tRNA synthetase B5 domain BLi03015 SM00896 Ferredoxin-fold anticodon binding domain BLi03017 SM00967 RNA 2'-O ribose methyltransferase substrate binding BLi03021 SM00813 Alpha-L-arabinofuranosidase C-terminus BLi03026 SM01007 Class II Aldolase and Adducin N-terminal domain BLi03039 SM00448 cheY-homologous receiver domain BLi03039 SM00850 LytTr DNA-binding domain BLi03040 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BLi03040 SM00387 Histidine kinase-like ATPases BLi03043 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BLi03046 SM00382 ATPases associated with a variety of cellular activities BLi03052 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BLi03053 SM00656 BLi03053 BLi03056 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BLi03056 SM01232 BLi03056 BLi03057 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BLi03057 SM00474 3'-5' exonuclease BLi03057 SM00475 5'-3' exonuclease BLi03057 SM00482 DNA polymerase A domain BLi03058 SM00091 PAS domain BLi03058 SM00387 Histidine kinase-like ATPases BLi03058 SM00388 His Kinase A (phosphoacceptor) domain BLi03059 SM00448 cheY-homologous receiver domain BLi03059 SM00862 Transcriptional regulatory protein, C terminal BLi03061 SM01329 BLi03061 BLi03071 SM00919 Malic enzyme, NAD binding domain BLi03071 SM01274 BLi03071 BLi03072 SM00481 DNA polymerase alpha chain like domain BLi03078 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi03080 SM00849 Metallo-beta-lactamase superfamily BLi03085 SM00852 Probable molybdopterin binding domain BLi03097 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi03100 SM00981 BLi03100 BLi03108 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BLi03109 SM00267 diguanylate cyclase BLi03111 SM00363 S4 RNA-binding domain BLi03111 SM01390 BLi03111 BLi03115 SM00849 Metallo-beta-lactamase superfamily BLi03116 SM00344 helix_turn_helix ASNC type BLi03118 SM00363 S4 RNA-binding domain BLi03121 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi03125 SM00354 helix_turn _helix lactose operon repressor BLi03126 SM00830 Chorismate mutase type II BLi03132 SM00382 ATPases associated with a variety of cellular activities BLi03132 SM00843 BLi03132 BLi03139 SM00919 Malic enzyme, NAD binding domain BLi03139 SM01274 BLi03139 BLi03140 SM00849 Metallo-beta-lactamase superfamily BLi03144 SM00642 Alpha-amylase domain BLi03145 SM00046 Diacylglycerol kinase catalytic domain (presumed) BLi03153 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi03154 SM00363 S4 RNA-binding domain BLi03159 SM00450 Rhodanese Homology Domain BLi03160 SM00028 Tetratricopeptide repeats BLi03167 SM00342 helix_turn_helix, arabinose operon control protein BLi03182 SM00382 ATPases associated with a variety of cellular activities BLi03184 SM00382 ATPases associated with a variety of cellular activities BLi03185 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi03187 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi03193 SM00014 Acid phosphatase homologues BLi03202 SM00382 ATPases associated with a variety of cellular activities BLi03210 SM01234 BLi03210 BLi03211 SM00947 Carbonic anhydrase BLi03212 SM00833 Cobalamin synthesis protein cobW C-terminal domain BLi03218 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BLi03230 SM00642 Alpha-amylase domain BLi03256 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi03261 SM00028 Tetratricopeptide repeats BLi03274 SM01005 Alanine racemase, C-terminal domain BLi03295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi03295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi03295 SM00319 Homologues of the ligand binding domain of Tar BLi03296 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi03296 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi03296 SM00319 Homologues of the ligand binding domain of Tar BLi03297 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi03297 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi03297 SM00319 Homologues of the ligand binding domain of Tar BLi03301 SM00642 Alpha-amylase domain BLi03305 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi03305 SM01091 Transporter associated domain BLi03319 SM00316 Ribosomal protein S1-like RNA-binding domain BLi03321 SM00344 helix_turn_helix ASNC type BLi03328 SM01298 BLi03328 BLi03329 SM00479 BLi03329 BLi03334 SM00091 PAS domain BLi03334 SM00387 Histidine kinase-like ATPases BLi03335 SM00448 cheY-homologous receiver domain BLi03353 SM00421 helix_turn_helix, Lux Regulon BLi03353 SM00448 cheY-homologous receiver domain BLi03362 SM00052 Putative diguanylate phosphodiesterase BLi03372 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi03382 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BLi03382 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BLi03406 SM00028 Tetratricopeptide repeats BLi03422 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi03442 SM01092 CO dehydrogenase flavoprotein C-terminal domain BLi03446 SM00028 Tetratricopeptide repeats BLi03451 SM00382 ATPases associated with a variety of cellular activities BLi03457 SM00382 ATPases associated with a variety of cellular activities BLi03457 SM00930 BLi03457 BLi03460 SM00493 BLi03460 BLi03472 SM00382 ATPases associated with a variety of cellular activities BLi03481 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi03482 SM00448 cheY-homologous receiver domain BLi03482 SM00862 Transcriptional regulatory protein, C terminal BLi03483 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi03483 SM00387 Histidine kinase-like ATPases BLi03483 SM00388 His Kinase A (phosphoacceptor) domain BLi03492 SM00421 helix_turn_helix, Lux Regulon BLi03492 SM00448 cheY-homologous receiver domain BLi03493 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi03493 SM00387 Histidine kinase-like ATPases BLi03503 SM01130 BLi03503 BLi03504 SM00382 ATPases associated with a variety of cellular activities BLi03507 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi03507 SM00895 BLi03507 BLi03511 SM00710 Parallel beta-helix repeats BLi03512 SM00858 BLi03512 BLi03514 SM00354 helix_turn _helix lactose operon repressor BLi03517 SM00387 Histidine kinase-like ATPases BLi03517 SM00388 His Kinase A (phosphoacceptor) domain BLi03518 SM00448 cheY-homologous receiver domain BLi03518 SM00862 Transcriptional regulatory protein, C terminal BLi03519 SM00382 ATPases associated with a variety of cellular activities BLi03544 SM00606 Cellulose Binding Domain Type IV BLi03544 SM01217 BLi03544 BLi03545 SM00382 ATPases associated with a variety of cellular activities BLi03557 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi03557 SM01134 BLi03557 BLi03561 SM01007 Class II Aldolase and Adducin N-terminal domain BLi03569 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi03574 SM00450 Rhodanese Homology Domain BLi03580 SM00835 Cupin BLi03598 SM00644 BLi03598 BLi03603 SM00710 Parallel beta-helix repeats BLi03604 SM00047 Lysozyme subfamily 2 BLi03626 SM00891 ERCC4 domain BLi03629 SM00885 D5 N terminal like BLi03641 SM00316 Ribosomal protein S1-like RNA-binding domain BLi03641 SM00357 Cold shock protein domain BLi03641 SM00955 BLi03641 BLi03644 SM00966 SpoVT / AbrB like domain BLi03645 SM00530 Helix-turn-helix XRE-family like proteins BLi03646 SM00530 Helix-turn-helix XRE-family like proteins BLi03647 SM00530 Helix-turn-helix XRE-family like proteins BLi03651 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi03651 SM00382 ATPases associated with a variety of cellular activities BLi03661 SM01192 BLi03661 BLi03661 SM01193 BLi03661 BLi03665 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BLi03671 SM00382 ATPases associated with a variety of cellular activities BLi03676 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi03676 SM00895 BLi03676 BLi03695 SM00530 Helix-turn-helix XRE-family like proteins BLi03702 SM01130 BLi03702 BLi03707 SM00640 Glycosyl hydrolases family 32 BLi03713 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi03715 SM00947 Carbonic anhydrase BLi03718 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BLi03729 SM00028 Tetratricopeptide repeats BLi03747 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi03758 SM00382 ATPases associated with a variety of cellular activities BLi03759 SM00487 DEAD-like helicases superfamily BLi03759 SM00490 helicase superfamily c-terminal domain BLi03762 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi03765 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi03765 SM00245 tail specific protease BLi03766 SM01329 BLi03766 BLi03769 SM00382 ATPases associated with a variety of cellular activities BLi03772 SM00937 BLi03772 BLi03773 SM00957 SecA DEAD-like domain BLi03773 SM00958 SecA preprotein cross-linking domain BLi03791 SM00487 DEAD-like helicases superfamily BLi03791 SM00490 helicase superfamily c-terminal domain BLi03793 SM00421 helix_turn_helix, Lux Regulon BLi03793 SM00448 cheY-homologous receiver domain BLi03794 SM00387 Histidine kinase-like ATPases BLi03804 SM00984 UDP binding domain BLi03808 SM00646 BLi03808 BLi03814 SM00382 ATPases associated with a variety of cellular activities BLi03821 SM00047 Lysozyme subfamily 2 BLi03821 SM00287 Bacterial SH3 domain homologues BLi03828 SM00354 helix_turn _helix lactose operon repressor BLi03837 SM00854 Bacterial capsule synthesis protein PGA_cap BLi03840 SM00354 helix_turn _helix lactose operon repressor BLi03843 SM00382 ATPases associated with a variety of cellular activities BLi03851 SM00344 helix_turn_helix ASNC type BLi03858 SM00487 DEAD-like helicases superfamily BLi03858 SM00490 helicase superfamily c-terminal domain BLi03861 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi03861 SM01134 BLi03861 BLi03879 SM00347 helix_turn_helix multiple antibiotic resistance protein BLi03881 SM00014 Acid phosphatase homologues BLi03882 SM01131 BLi03882 BLi03885 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi03887 SM00116 Domain in cystathionine beta-synthase and other proteins. BLi03887 SM01091 Transporter associated domain BLi03889 SM00938 Nitrogen regulatory protein P-II BLi03895 SM00155 Phospholipase D. Active site motifs. BLi03897 SM00923 MbtH-like protein BLi03898 SM00823 Phosphopantetheine attachment site BLi03898 SM00824 Thioesterase BLi03902 SM00822 BLi03902 BLi03907 SM00342 helix_turn_helix, arabinose operon control protein BLi03915 SM00729 Elongator protein 3, MiaB family, Radical SAM BLi03919 SM00327 von Willebrand factor (vWF) type A domain BLi03920 SM00327 von Willebrand factor (vWF) type A domain BLi03926 SM00382 ATPases associated with a variety of cellular activities BLi03938 SM00226 Low molecular weight phosphatase family BLi03947 SM00354 helix_turn _helix lactose operon repressor BLi03949 SM00937 BLi03949 BLi03953 SM00919 Malic enzyme, NAD binding domain BLi03953 SM01274 BLi03953 BLi03956 SM00357 Cold shock protein domain BLi03956 SM00382 ATPases associated with a variety of cellular activities BLi03956 SM00959 Rho termination factor, N-terminal domain BLi03961 SM00448 cheY-homologous receiver domain BLi03970 SM00155 Phospholipase D. Active site motifs. BLi03971 SM00836 DALR anticodon binding domain BLi03971 SM01016 Arginyl tRNA synthetase N terminal dom BLi03983 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BLi03995 SM00346 helix_turn_helix isocitrate lyase regulation BLi04005 SM00382 ATPases associated with a variety of cellular activities BLi04007 SM00421 helix_turn_helix, Lux Regulon BLi04007 SM00448 cheY-homologous receiver domain BLi04012 SM00986 Uracil DNA glycosylase superfamily BLi04012 SM00987 UreE urease accessory protein, C-terminal domain BLi04016 SM00640 Glycosyl hydrolases family 32 BLi04018 SM01061 CAT RNA binding domain BLi04031 SM00382 ATPases associated with a variety of cellular activities BLi04032 SM00382 ATPases associated with a variety of cellular activities BLi04036 SM00421 helix_turn_helix, Lux Regulon BLi04036 SM00448 cheY-homologous receiver domain BLi04060 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BLi04065 SM00387 Histidine kinase-like ATPases BLi04066 SM00421 helix_turn_helix, Lux Regulon BLi04066 SM00448 cheY-homologous receiver domain BLi04070 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BLi04073 SM00346 helix_turn_helix isocitrate lyase regulation BLi04078 SM00954 Region found in RelA / SpoT proteins BLi04093 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi04093 SM00895 BLi04093 BLi04099 SM00382 ATPases associated with a variety of cellular activities BLi04105 SM00382 ATPases associated with a variety of cellular activities BLi04111 SM01060 BLi04111 BLi04113 SM01060 BLi04113 BLi04117 SM00382 ATPases associated with a variety of cellular activities BLi04120 SM00382 ATPases associated with a variety of cellular activities BLi04122 SM00530 Helix-turn-helix XRE-family like proteins BLi04125 SM00382 ATPases associated with a variety of cellular activities BLi04126 SM01260 BLi04126 BLi04128 SM01260 BLi04128 BLi04129 SM00656 BLi04129 BLi04131 SM00382 ATPases associated with a variety of cellular activities BLi04132 SM00382 ATPases associated with a variety of cellular activities BLi04137 SM00919 Malic enzyme, NAD binding domain BLi04137 SM01274 BLi04137 BLi04140 SM00870 BLi04140 BLi04141 SM00530 Helix-turn-helix XRE-family like proteins BLi04145 SM00387 Histidine kinase-like ATPases BLi04146 SM00382 ATPases associated with a variety of cellular activities BLi04157 SM00894 Excalibur calcium-binding domain BLi04167 SM00100 Cyclic nucleotide-monophosphate binding domain BLi04167 SM00419 helix_turn_helix, cAMP Regulatory protein BLi04176 SM00382 ATPases associated with a variety of cellular activities BLi04178 SM00640 Glycosyl hydrolases family 32 BLi04183 SM00354 helix_turn _helix lactose operon repressor BLi04198 SM00871 Bacterial transcription activator, effector binding domain BLi04201 SM01061 CAT RNA binding domain BLi04203 SM00382 ATPases associated with a variety of cellular activities BLi04211 SM00382 ATPases associated with a variety of cellular activities BLi04212 SM00387 Histidine kinase-like ATPases BLi04213 SM00448 cheY-homologous receiver domain BLi04213 SM00862 Transcriptional regulatory protein, C terminal BLi04221 SM00487 DEAD-like helicases superfamily BLi04221 SM00490 helicase superfamily c-terminal domain BLi04227 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BLi04229 SM01133 BLi04229 BLi04233 SM00267 diguanylate cyclase BLi04252 SM00420 helix_turn_helix, Deoxyribose operon repressor BLi04252 SM01134 BLi04252 BLi04256 SM00387 Histidine kinase-like ATPases BLi04257 SM00382 ATPases associated with a variety of cellular activities BLi04266 SM00899 BLi04266 BLi04269 SM00382 ATPases associated with a variety of cellular activities BLi04270 SM00387 Histidine kinase-like ATPases BLi04270 SM00388 His Kinase A (phosphoacceptor) domain BLi04271 SM00448 cheY-homologous receiver domain BLi04271 SM00862 Transcriptional regulatory protein, C terminal BLi04273 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BLi04273 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi04275 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BLi04275 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BLi04281 SM00354 helix_turn _helix lactose operon repressor BLi04286 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi04286 SM00895 BLi04286 BLi04289 SM01350 BLi04289 BLi04298 SM00382 ATPases associated with a variety of cellular activities BLi04304 SM00421 helix_turn_helix, Lux Regulon BLi04304 SM00448 cheY-homologous receiver domain BLi04307 SM00382 ATPases associated with a variety of cellular activities BLi04315 SM00487 DEAD-like helicases superfamily BLi04323 SM00857 Resolvase, N terminal domain BLi04330 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BLi04331 SM00849 Metallo-beta-lactamase superfamily BLi04334 SM00091 PAS domain BLi04334 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BLi04334 SM00387 Histidine kinase-like ATPases BLi04334 SM00388 His Kinase A (phosphoacceptor) domain BLi04335 SM00448 cheY-homologous receiver domain BLi04335 SM00862 Transcriptional regulatory protein, C terminal BLi04341 SM00788 Adenylosuccinate synthetase BLi04343 SM00382 ATPases associated with a variety of cellular activities BLi04350 SM00345 helix_turn_helix gluconate operon transcriptional repressor BLi04350 SM00866 BLi04350 BLi04354 SM00267 diguanylate cyclase BLi04368 SM00470 ParB-like nuclease domain BLi04372 SM00470 ParB-like nuclease domain BLi04374 SM01228 BLi04374 BLi04376 SM00393 Putative single-stranded nucleic acids-binding domain BLi04376 SM01245 BLi04376 BLi05016 SM00530 Helix-turn-helix XRE-family like proteins BLi05017 SM00530 Helix-turn-helix XRE-family like proteins BLi05022 SM00060 Fibronectin type 3 domain BLi05026 SM00507 HNH nucleases BLi05034 SM00507 HNH nucleases BLi05037 SM00530 Helix-turn-helix XRE-family like proteins