locus-tag class description GII88_00005 PF00308 Bacterial dnaA protein GII88_00005 PF08299 Bacterial dnaA protein helix-turn-helix GII88_00005 PF11638 DnaA N-terminal domain GII88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain GII88_00010 PF02767 DNA polymerase III beta subunit, central domain GII88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain GII88_00020 PF02463 RecF/RecN/SMC N terminal domain GII88_00025 PF04025 Domain of unknown function (DUF370) GII88_00030 PF00204 DNA gyrase B GII88_00030 PF00986 DNA gyrase B subunit, carboxyl terminus GII88_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_00030 PF01751 Toprim domain GII88_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A GII88_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller GII88_00065 PF14175 YaaC-like Protein GII88_00070 PF00571 CBS domain GII88_00070 PF00478 IMP dehydrogenase / GMP reductase domain GII88_00075 PF00768 D-alanyl-D-alanine carboxypeptidase GII88_00075 PF07943 Penicillin-binding protein 5, C-terminal domain GII88_00080 PF01680 SOR/SNZ family GII88_00085 PF01174 SNO glutamine amidotransferase family GII88_00090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GII88_00090 PF02403 Seryl-tRNA synthetase N-terminal domain GII88_00100 PF02595 Glycerate kinase family GII88_00105 PF02447 GntP family permease GII88_00110 PF13556 PucR C-terminal helix-turn-helix domain GII88_00110 PF17853 GGDEF-like domain GII88_00110 PF05651 Putative sugar diacid recognition GII88_00125 PF01712 Deoxynucleoside kinase GII88_00130 PF01712 Deoxynucleoside kinase GII88_00135 PF01476 LysM domain GII88_00135 PF00704 Glycosyl hydrolases family 18 GII88_00140 PF00857 Isochorismatase family GII88_00145 PF14437 MafB19-like deaminase GII88_00155 PF12169 DNA polymerase III subunits gamma and tau domain III GII88_00160 PF02575 YbaB/EbfC DNA-binding family GII88_00165 PF02132 RecR protein GII88_00165 PF13662 Toprim domain GII88_00170 PF10704 Protein of unknown function (DUF2508) GII88_00175 PF07441 SigmaK-factor processing regulatory protein BofA GII88_00205 PF10764 Inhibitor of sigma-G Gin GII88_00210 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein GII88_00215 PF05816 Toxic anion resistance protein (TelA) GII88_00220 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GII88_00220 PF01276 Orn/Lys/Arg decarboxylase, major domain GII88_00225 PF02223 Thymidylate kinase GII88_00230 PF06153 Cyclic-di-AMP receptor GII88_00235 PF03885 Protein of unknown function (DUF327) GII88_00240 PF09115 DNA polymerase III, delta subunit, C terminal GII88_00245 PF04468 PSP1 C-terminal conserved region GII88_00250 PF06156 Initiation control protein YabA GII88_00255 PF05175 Methyltransferase small domain GII88_00260 PF01541 GIY-YIG catalytic domain GII88_00265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GII88_00270 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GII88_00270 PF18277 AbrB C-terminal domain GII88_00275 PF01588 Putative tRNA binding domain GII88_00275 PF08264 Anticodon-binding domain of tRNA GII88_00275 PF09334 tRNA synthetases class I (M) GII88_00280 PF01026 TatD related DNase GII88_00285 PF06725 3D domain GII88_00285 PF03990 G5-linked-Ubiquitin-like domain GII88_00285 PF07501 G5 domain GII88_00290 PF13331 Domain of unknown function (DUF4093) GII88_00290 PF13662 Toprim domain GII88_00295 PF00398 Ribosomal RNA adenine dimethylase GII88_00300 PF05582 YabG peptidase U57 GII88_00305 PF06257 Biofilm formation stimulator VEG GII88_00310 PF00269 Small, acid-soluble spore proteins, alpha/beta type GII88_00315 PF00288 GHMP kinases N terminal domain GII88_00315 PF08544 GHMP kinases C terminal GII88_00320 PF09182 Bacterial purine repressor, N-terminal GII88_00320 PF00156 Phosphoribosyl transferase domain GII88_00325 PF01042 Endoribonuclease L-PSP GII88_00330 PF04026 SpoVG GII88_00335 PF00483 Nucleotidyl transferase GII88_00335 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_00340 PF14572 Phosphoribosyl synthetase-associated domain GII88_00340 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GII88_00345 PF01386 Ribosomal L25p family GII88_00345 PF14693 Ribosomal protein TL5, C-terminal domain GII88_00350 PF01195 Peptidyl-tRNA hydrolase GII88_00355 PF10955 Protein of unknown function (DUF2757) GII88_00360 PF17757 UvrB interaction domain GII88_00360 PF03461 TRCF domain GII88_00360 PF00270 DEAD/DEAH box helicase GII88_00360 PF00271 Helicase conserved C-terminal domain GII88_00360 PF02559 CarD-like/TRCF domain GII88_00365 PF15714 Stage V sporulation protein T C-terminal, transcription factor GII88_00365 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GII88_00370 PF01943 Polysaccharide biosynthesis protein GII88_00370 PF14667 Polysaccharide biosynthesis C-terminal domain GII88_00375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GII88_00375 PF03819 MazG nucleotide pyrophosphohydrolase domain GII88_00380 PF01479 S4 domain GII88_00385 PF07873 YabP family GII88_00390 PF09578 Spore cortex protein YabQ (Spore_YabQ) GII88_00395 PF04977 Septum formation initiator GII88_00400 PF00575 S1 RNA binding domain GII88_00415 PF07228 Stage II sporulation protein E (SpoIIE) GII88_00420 PF00092 von Willebrand factor type A domain GII88_00425 PF00069 Protein kinase domain GII88_00430 PF01171 PP-loop family GII88_00430 PF09179 TilS substrate binding domain GII88_00430 PF11734 TilS substrate C-terminal domain GII88_00440 PF17862 AAA+ lid domain GII88_00440 PF01434 Peptidase family M41 GII88_00440 PF00004 ATPase family associated with various cellular activities (AAA) GII88_00440 PF06480 FtsH Extracellular GII88_00445 PF03309 Type III pantothenate kinase GII88_00450 PF01430 Hsp33 protein GII88_00455 PF13145 PPIC-type PPIASE domain GII88_00460 PF00291 Pyridoxal-phosphate dependent enzyme GII88_00470 PF04715 Anthranilate synthase component I, N terminal region GII88_00470 PF00425 chorismate binding enzyme GII88_00475 PF00117 Glutamine amidotransferase class-I GII88_00480 PF01063 Amino-transferase class IV GII88_00485 PF00809 Pterin binding enzyme GII88_00490 PF02152 Dihydroneopterin aldolase GII88_00495 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GII88_00500 PF01381 Helix-turn-helix GII88_00505 PF01207 Dihydrouridine synthase (Dus) GII88_00510 PF01336 OB-fold nucleic acid binding domain GII88_00510 PF00152 tRNA synthetases class II (D, K and N) GII88_00590 PF17727 CtsR C-terminal dimerization domain GII88_00590 PF05848 CtsR N-terminal HTH domain GII88_00595 PF02151 UvrB/uvrC motif GII88_00600 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain GII88_00605 PF02861 Clp amino terminal domain, pathogenicity island component GII88_00605 PF10431 C-terminal, D2-small domain, of ClpB protein GII88_00605 PF00004 ATPase family associated with various cellular activities (AAA) GII88_00605 PF17871 AAA lid domain GII88_00605 PF07724 AAA domain (Cdc48 subfamily) GII88_00610 PF18073 Rubredoxin metal binding domain GII88_00615 PF02457 DisA bacterial checkpoint controller nucleotide-binding GII88_00615 PF10635 DisA bacterial checkpoint controller linker region GII88_00625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GII88_00630 PF02542 YgbB family GII88_00635 PF00749 tRNA synthetases class I (E and Q), catalytic domain GII88_00640 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_00645 PF01406 tRNA synthetases class I (C) catalytic domain GII88_00645 PF09190 DALR domain GII88_00650 PF00636 Ribonuclease III domain GII88_00655 PF08032 RNA 2'-O ribose methyltransferase substrate binding GII88_00655 PF00588 SpoU rRNA Methylase family GII88_00660 PF05991 YacP-like NYN domain GII88_00665 PF04542 Sigma-70 region 2 GII88_00665 PF08281 Sigma-70, region 4 GII88_00670 PF00471 Ribosomal protein L33 GII88_00675 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GII88_00680 PF00467 KOW motif GII88_00680 PF02357 Transcription termination factor nusG GII88_00685 PF03946 Ribosomal protein L11, N-terminal domain GII88_00685 PF00298 Ribosomal protein L11, RNA binding domain GII88_00690 PF00687 Ribosomal protein L1p/L10e family GII88_00695 PF00466 Ribosomal protein L10 GII88_00700 PF00542 Ribosomal protein L7/L12 C-terminal domain GII88_00700 PF16320 Ribosomal protein L7/L12 dimerisation domain GII88_00705 PF05175 Methyltransferase small domain GII88_00710 PF04560 RNA polymerase Rpb2, domain 7 GII88_00710 PF00562 RNA polymerase Rpb2, domain 6 GII88_00710 PF10385 RNA polymerase beta subunit external 1 domain GII88_00710 PF04565 RNA polymerase Rpb2, domain 3 GII88_00710 PF04563 RNA polymerase beta subunit GII88_00710 PF04561 RNA polymerase Rpb2, domain 2 GII88_00715 PF04983 RNA polymerase Rpb1, domain 3 GII88_00715 PF05000 RNA polymerase Rpb1, domain 4 GII88_00715 PF04997 RNA polymerase Rpb1, domain 1 GII88_00715 PF00623 RNA polymerase Rpb1, domain 2 GII88_00715 PF04998 RNA polymerase Rpb1, domain 5 GII88_00720 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family GII88_00725 PF00164 Ribosomal protein S12/S23 GII88_00730 PF00177 Ribosomal protein S7p/S5e GII88_00735 PF03144 Elongation factor Tu domain 2 GII88_00735 PF03764 Elongation factor G, domain IV GII88_00735 PF14492 Elongation Factor G, domain II GII88_00735 PF00679 Elongation factor G C-terminus GII88_00735 PF00009 Elongation factor Tu GTP binding domain GII88_00740 PF03144 Elongation factor Tu domain 2 GII88_00740 PF03143 Elongation factor Tu C-terminal domain GII88_00740 PF00009 Elongation factor Tu GTP binding domain GII88_00745 PF00338 Ribosomal protein S10p/S20e GII88_00750 PF00297 Ribosomal protein L3 GII88_00755 PF00573 Ribosomal protein L4/L1 family GII88_00760 PF00276 Ribosomal protein L23 GII88_00765 PF00181 Ribosomal Proteins L2, RNA binding domain GII88_00765 PF03947 Ribosomal Proteins L2, C-terminal domain GII88_00770 PF00203 Ribosomal protein S19 GII88_00775 PF00237 Ribosomal protein L22p/L17e GII88_00780 PF00189 Ribosomal protein S3, C-terminal domain GII88_00780 PF07650 KH domain GII88_00785 PF00252 Ribosomal protein L16p/L10e GII88_00790 PF00831 Ribosomal L29 protein GII88_00795 PF00366 Ribosomal protein S17 GII88_00800 PF00238 Ribosomal protein L14p/L23e GII88_00805 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GII88_00805 PF00467 KOW motif GII88_00810 PF00673 ribosomal L5P family C-terminus GII88_00810 PF00281 Ribosomal protein L5 GII88_00815 PF00253 Ribosomal protein S14p/S29e GII88_00820 PF00410 Ribosomal protein S8 GII88_00825 PF00347 Ribosomal protein L6 GII88_00830 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GII88_00835 PF03719 Ribosomal protein S5, C-terminal domain GII88_00835 PF00333 Ribosomal protein S5, N-terminal domain GII88_00840 PF00327 Ribosomal protein L30p/L7e GII88_00845 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GII88_00850 PF00344 SecY translocase GII88_00855 PF05191 Adenylate kinase, active site lid GII88_00860 PF00557 Metallopeptidase family M24 GII88_00870 PF01176 Translation initiation factor 1A / IF-1 GII88_00875 PF00444 Ribosomal protein L36 GII88_00880 PF00416 Ribosomal protein S13/S18 GII88_00885 PF00411 Ribosomal protein S11 GII88_00890 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GII88_00890 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GII88_00890 PF01000 RNA polymerase Rpb3/RpoA insert domain GII88_00895 PF01196 Ribosomal protein L17 GII88_00900 PF00005 ABC transporter GII88_00905 PF00005 ABC transporter GII88_00910 PF02361 Cobalt transport protein GII88_00915 PF01416 tRNA pseudouridine synthase GII88_00920 PF00572 Ribosomal protein L13 GII88_00925 PF00380 Ribosomal protein S9/S16 GII88_00930 PF05163 DinB family GII88_00935 PF10730 Protein of unknown function (DUF2521) GII88_00940 PF01520 N-acetylmuramoyl-L-alanine amidase GII88_00945 PF10609 NUBPL iron-transfer P-loop NTPase GII88_00950 PF17898 Spore germination GerD central core domain GII88_00955 PF14089 KinB-signalling pathway activation in sporulation GII88_00960 PF01522 Polysaccharide deacetylase GII88_00990 PF02899 Phage integrase, N-terminal SAM-like domain GII88_00990 PF00589 Phage integrase family GII88_00995 PF06114 IrrE N-terminal-like domain GII88_01005 PF01381 Helix-turn-helix GII88_01040 PF09466 Hypothetical protein Yqai GII88_01075 PF00772 DnaB-like helicase N terminal domain GII88_01075 PF03796 DnaB-like helicase C terminal domain GII88_01090 PF05866 Endodeoxyribonuclease RusA GII88_01100 PF17356 Phage-like element PBSX protein XtrA GII88_01110 PF01381 Helix-turn-helix GII88_01120 PF18801 response regulator aspartate phosphatase H, N terminal GII88_01125 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH GII88_01125 PF04740 LXG domain of WXG superfamily GII88_01145 PF17288 Terminase RNAseH like domain GII88_01145 PF04466 Phage terminase large subunit GII88_01150 PF04860 Phage portal protein GII88_01155 PF04233 Phage Mu protein F like protein GII88_01160 PF13676 TIR domain GII88_01170 PF14550 Putative phage serine protease XkdF GII88_01175 PF05065 Phage capsid family GII88_01180 PF14553 YqbF, hypothetical protein domain GII88_01185 PF11436 Protein of unknown function (DUF3199) GII88_01190 PF12206 Domain of unknown function (DUF3599) GII88_01195 PF04883 Bacteriophage HK97-gp10, putative tail-component GII88_01210 PF17481 Phage tail sheath protein beta-sandwich domain GII88_01210 PF04984 Phage tail sheath protein subtilisin-like domain GII88_01210 PF17482 Phage tail sheath C-terminal domain GII88_01215 PF09393 Phage tail tube protein GII88_01220 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC GII88_01230 PF01464 Transglycosylase SLT domain GII88_01230 PF01464 Transglycosylase SLT domain GII88_01235 PF01476 LysM domain GII88_01245 PF10844 Protein of unknown function (DUF2577) GII88_01250 PF10934 Protein of unknown function (DUF2634) GII88_01255 PF04865 Baseplate J-like protein GII88_01260 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) GII88_01275 PF09636 XkdW protein GII88_01280 PF09693 Phage uncharacterised protein (Phage_XkdX) GII88_01290 PF10779 Haemolysin XhlA GII88_01295 PF04688 SPP1 phage holin GII88_01300 PF01510 N-acetylmuramoyl-L-alanine amidase GII88_01300 PF01471 Putative peptidoglycan binding domain GII88_01315 PF01068 ATP dependent DNA ligase domain GII88_01330 PF08863 YolD-like protein GII88_01340 PF00144 Beta-lactamase GII88_01350 PF01758 Sodium Bile acid symporter family GII88_01355 PF17369 Family of unknown function (DUF5391) GII88_01365 PF07075 Protein of unknown function (DUF1343) GII88_01370 PF00933 Glycosyl hydrolase family 3 N terminal domain GII88_01370 PF01915 Glycosyl hydrolase family 3 C-terminal domain GII88_01375 PF00144 Beta-lactamase GII88_01380 PF00367 phosphotransferase system, EIIB GII88_01380 PF02378 Phosphotransferase system, EIIC GII88_01385 PF01418 Helix-turn-helix domain, rpiR family GII88_01385 PF01380 SIS domain GII88_01390 PF01380 SIS domain GII88_01395 PF04463 Protein of unknown function (DUF523) GII88_01425 PF00491 Arginase family GII88_01430 PF04542 Sigma-70 region 2 GII88_01430 PF08281 Sigma-70, region 4 GII88_01435 PF13490 Putative zinc-finger GII88_01440 PF02457 DisA bacterial checkpoint controller nucleotide-binding GII88_01445 PF07949 YbbR-like protein GII88_01450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GII88_01450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GII88_01450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GII88_01450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GII88_01455 PF01380 SIS domain GII88_01470 PF00005 ABC transporter GII88_01475 PF00392 Bacterial regulatory proteins, gntR family GII88_01485 PF07690 Major Facilitator Superfamily GII88_01495 PF00005 ABC transporter GII88_01495 PF00664 ABC transporter transmembrane region GII88_01500 PF01323 DSBA-like thioredoxin domain GII88_01515 PF04439 Streptomycin adenylyltransferase GII88_01525 PF13419 Haloacid dehalogenase-like hydrolase GII88_01530 PF00324 Amino acid permease GII88_01535 PF03600 Citrate transporter GII88_01540 PF03401 Tripartite tricarboxylate transporter family receptor GII88_01545 PF00072 Response regulator receiver domain GII88_01545 PF12431 Transcriptional regulator GII88_01545 PF08279 HTH domain GII88_01550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_01550 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GII88_01555 PF03466 LysR substrate binding domain GII88_01555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_01565 PF07690 Major Facilitator Superfamily GII88_01570 PF17334 Minor curli fiber component A GII88_01575 PF17340 Family of unknown function (DUF5370) GII88_01585 PF03190 Protein of unknown function, DUF255 GII88_01610 PF12671 Putative amidase domain GII88_01630 PF03190 Protein of unknown function, DUF255 GII88_01640 PF07690 Major Facilitator Superfamily GII88_01660 PF02690 Na+/Pi-cotransporter GII88_01665 PF05360 yiaA/B two helix domain GII88_01690 PF00892 EamA-like transporter family GII88_01695 PF12833 Helix-turn-helix domain GII88_01695 PF02311 AraC-like ligand binding domain GII88_01715 PF00465 Iron-containing alcohol dehydrogenase GII88_01720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_01720 PF00672 HAMP domain GII88_01720 PF12729 Four helix bundle sensory module for signal transduction GII88_01725 PF13407 Periplasmic binding protein domain GII88_01745 PF10710 Protein of unknown function (DUF2512) GII88_01750 PF00324 Amino acid permease GII88_01755 PF02574 Homocysteine S-methyltransferase GII88_01760 PF04794 YdjC-like protein GII88_01765 PF02378 Phosphotransferase system, EIIC GII88_01765 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GII88_01765 PF00367 phosphotransferase system, EIIB GII88_01770 PF07739 TipAS antibiotic-recognition domain GII88_01770 PF13411 MerR HTH family regulatory protein GII88_01775 PF04239 Protein of unknown function (DUF421) GII88_01780 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_01790 PF10990 Protein of unknown function (DUF2809) GII88_01795 PF01235 Sodium:alanine symporter family GII88_01800 PF04960 Glutaminase GII88_01805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_01810 PF08664 YcbB domain GII88_01810 PF00072 Response regulator receiver domain GII88_01815 PF13302 Acetyltransferase (GNAT) domain GII88_01820 PF05569 BlaR1 peptidase M56 GII88_01820 PF00905 Penicillin binding protein transpeptidase domain GII88_01825 PF03965 Penicillinase repressor GII88_01835 PF16655 PhoD-like phosphatase, N-terminal domain GII88_01835 PF09423 PhoD-like phosphatase GII88_01840 PF02416 mttA/Hcf106 family GII88_01845 PF00902 Sec-independent protein translocase protein (TatC) GII88_01850 PF00701 Dihydrodipicolinate synthetase family GII88_01855 PF00171 Aldehyde dehydrogenase family GII88_01860 PF07690 Major Facilitator Superfamily GII88_01865 PF13378 Enolase C-terminal domain-like GII88_01870 PF07729 FCD domain GII88_01870 PF00392 Bacterial regulatory proteins, gntR family GII88_01875 PF08666 SAF domain GII88_01875 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus GII88_01880 PF00486 Transcriptional regulatory protein, C terminal GII88_01880 PF00072 Response regulator receiver domain GII88_01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_01885 PF00512 His Kinase A (phospho-acceptor) domain GII88_01890 PF00005 ABC transporter GII88_01905 PF13039 Protein of unknown function (DUF3900) GII88_01905 PF13037 Domain of unknown function (DUF3898) GII88_01910 PF16226 Domain of unknown function (DUF4885) GII88_01915 PF01636 Phosphotransferase enzyme family GII88_01920 PF01047 MarR family GII88_01925 PF13193 AMP-binding enzyme C-terminal domain GII88_01925 PF00501 AMP-binding enzyme GII88_01945 PF07739 TipAS antibiotic-recognition domain GII88_01945 PF13411 MerR HTH family regulatory protein GII88_01955 PF03551 Transcriptional regulator PadR-like family GII88_01955 PF13847 Methyltransferase domain GII88_01965 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein GII88_01970 PF00892 EamA-like transporter family GII88_01975 PF06271 RDD family GII88_01980 PF02810 SEC-C motif GII88_01980 PF05225 helix-turn-helix, Psq domain GII88_01985 PF00005 ABC transporter GII88_02000 PF00072 Response regulator receiver domain GII88_02000 PF00486 Transcriptional regulatory protein, C terminal GII88_02005 PF00512 His Kinase A (phospho-acceptor) domain GII88_02005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_02010 PF03466 LysR substrate binding domain GII88_02010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_02015 PF14552 Tautomerase enzyme GII88_02030 PF17118 Domain of unknown function (DUF5105) GII88_02030 PF11611 Domain of unknown function (DUF4352) GII88_02035 PF03606 C4-dicarboxylate anaerobic carrier GII88_02040 PF01546 Peptidase family M20/M25/M40 GII88_02040 PF07687 Peptidase dimerisation domain GII88_02045 PF00583 Acetyltransferase (GNAT) family GII88_02050 PF01425 Amidase GII88_02055 PF08439 Oligopeptidase F GII88_02055 PF01432 Peptidase family M3 GII88_02060 PF04226 Transglycosylase associated protein GII88_02070 PF02754 Cysteine-rich domain GII88_02070 PF13183 4Fe-4S dicluster domain GII88_02075 PF02913 FAD linked oxidases, C-terminal domain GII88_02075 PF01565 FAD binding domain GII88_02080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_02085 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GII88_02090 PF02378 Phosphotransferase system, EIIC GII88_02095 PF11975 Family 4 glycosyl hydrolase C-terminal domain GII88_02095 PF02056 Family 4 glycosyl hydrolase GII88_02105 PF04794 YdjC-like protein GII88_02110 PF00704 Glycosyl hydrolases family 18 GII88_02110 PF00041 Fibronectin type III domain GII88_02120 PF00089 Trypsin GII88_02135 PF16244 Domain of unknown function (DUF4901) GII88_02140 PF00581 Rhodanese-like domain GII88_02145 PF07486 Cell Wall Hydrolase GII88_02150 PF00296 Luciferase-like monooxygenase GII88_02155 PF00877 NlpC/P60 family GII88_02165 PF00005 ABC transporter GII88_02165 PF13732 Domain of unknown function (DUF4162) GII88_02170 PF00440 Bacterial regulatory proteins, tetR family GII88_02170 PF17932 Tetracyclin repressor-like, C-terminal domain GII88_02190 PF02342 TerD domain GII88_02195 PF02342 TerD domain GII88_02200 PF02342 TerD domain GII88_02205 PF03741 Integral membrane protein TerC family GII88_02220 PF14266 Putative component of 'biosynthetic module' GII88_02225 PF05816 Toxic anion resistance protein (TelA) GII88_02230 PF02683 Cytochrome C biogenesis protein transmembrane region GII88_02240 PF13411 MerR HTH family regulatory protein GII88_02245 PF07690 Major Facilitator Superfamily GII88_02250 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GII88_02250 PF00056 lactate/malate dehydrogenase, NAD binding domain GII88_02255 PF02652 L-lactate permease GII88_02260 PF01810 LysE type translocator GII88_02265 PF00324 Amino acid permease GII88_02270 PF02540 NAD synthase GII88_02275 PF01202 Shikimate kinase GII88_02280 PF10127 RNA repair pathway DNA polymerase beta family GII88_02285 PF01619 Proline dehydrogenase GII88_02290 PF00171 Aldehyde dehydrogenase family GII88_02295 PF00474 Sodium:solute symporter family GII88_02300 PF17853 GGDEF-like domain GII88_02300 PF13556 PucR C-terminal helix-turn-helix domain GII88_02305 PF09323 Domain of unknown function (DUF1980) GII88_02310 PF03773 Predicted permease GII88_02315 PF05448 Acetyl xylan esterase (AXE1) GII88_02335 PF00528 Binding-protein-dependent transport system inner membrane component GII88_02340 PF00497 Bacterial extracellular solute-binding proteins, family 3 GII88_02345 PF02525 Flavodoxin-like fold GII88_02355 PF00232 Glycosyl hydrolase family 1 GII88_02360 PF11033 Competence protein J (ComJ) GII88_02365 PF14040 Deoxyribonuclease NucA/NucB GII88_02370 PF00069 Protein kinase domain GII88_02380 PF04740 LXG domain of WXG superfamily GII88_02385 PF05378 Hydantoinase/oxoprolinase N-terminal region GII88_02385 PF01968 Hydantoinase/oxoprolinase GII88_02390 PF02538 Hydantoinase B/oxoprolinase GII88_02400 PF00005 ABC transporter GII88_02400 PF08402 TOBE domain GII88_02405 PF00528 Binding-protein-dependent transport system inner membrane component GII88_02410 PF00528 Binding-protein-dependent transport system inner membrane component GII88_02415 PF00501 AMP-binding enzyme GII88_02415 PF13193 AMP-binding enzyme C-terminal domain GII88_02415 PF00668 Condensation domain GII88_02415 PF00550 Phosphopantetheine attachment site GII88_02420 PF00501 AMP-binding enzyme GII88_02420 PF13193 AMP-binding enzyme C-terminal domain GII88_02420 PF00550 Phosphopantetheine attachment site GII88_02420 PF00668 Condensation domain GII88_02425 PF00550 Phosphopantetheine attachment site GII88_02425 PF00501 AMP-binding enzyme GII88_02425 PF13193 AMP-binding enzyme C-terminal domain GII88_02425 PF00668 Condensation domain GII88_02425 PF00975 Thioesterase domain GII88_02430 PF00975 Thioesterase domain GII88_02435 PF00892 EamA-like transporter family GII88_02440 PF00392 Bacterial regulatory proteins, gntR family GII88_02440 PF00155 Aminotransferase class I and II GII88_02445 PF01648 4'-phosphopantetheinyl transferase superfamily GII88_02450 PF00756 Putative esterase GII88_02470 PF00005 ABC transporter GII88_02490 PF00672 HAMP domain GII88_02490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_02495 PF00005 ABC transporter GII88_02500 PF00528 Binding-protein-dependent transport system inner membrane component GII88_02505 PF00497 Bacterial extracellular solute-binding proteins, family 3 GII88_02510 PF00158 Sigma-54 interaction domain GII88_02510 PF13426 PAS domain GII88_02510 PF02954 Bacterial regulatory protein, Fis family GII88_02515 PF00202 Aminotransferase class-III GII88_02520 PF00324 Amino acid permease GII88_02525 PF00491 Arginase family GII88_02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_02530 PF03466 LysR substrate binding domain GII88_02535 PF02441 Flavoprotein GII88_02540 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase GII88_02590 PF14449 Pre-toxin TG GII88_02590 PF04740 LXG domain of WXG superfamily GII88_02610 PF00672 HAMP domain GII88_02610 PF06580 Histidine kinase GII88_02610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_02610 PF02743 Cache domain GII88_02615 PF12833 Helix-turn-helix domain GII88_02615 PF00072 Response regulator receiver domain GII88_02620 PF13407 Periplasmic binding protein domain GII88_02625 PF00005 ABC transporter GII88_02630 PF02653 Branched-chain amino acid transport system / permease component GII88_02635 PF07690 Major Facilitator Superfamily GII88_02640 PF01047 MarR family GII88_02640 PF00583 Acetyltransferase (GNAT) family GII88_02645 PF08532 Beta-galactosidase trimerisation domain GII88_02645 PF02449 Beta-galactosidase GII88_02645 PF08533 Beta-galactosidase C-terminal domain GII88_02650 PF02333 Phytase GII88_02655 PF00854 POT family GII88_02660 PF12708 Pectate lyase superfamily protein GII88_02660 PF13229 Right handed beta helix region GII88_02670 PF03323 Bacillus/Clostridium GerA spore germination protein GII88_02675 PF05504 Spore germination B3/ GerAC like, C-terminal GII88_02680 PF03845 Spore germination protein GII88_02685 PF07739 TipAS antibiotic-recognition domain GII88_02685 PF13411 MerR HTH family regulatory protein GII88_02690 PF00005 ABC transporter GII88_02695 PF02687 FtsX-like permease family GII88_02695 PF12704 MacB-like periplasmic core domain GII88_02700 PF00486 Transcriptional regulatory protein, C terminal GII88_02700 PF00072 Response regulator receiver domain GII88_02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_02705 PF00672 HAMP domain GII88_02705 PF00512 His Kinase A (phospho-acceptor) domain GII88_02715 PF13840 ACT domain GII88_02715 PF00696 Amino acid kinase family GII88_02720 PF01032 FecCD transport family GII88_02725 PF01032 FecCD transport family GII88_02730 PF00005 ABC transporter GII88_02735 PF01497 Periplasmic binding protein GII88_02740 PF07690 Major Facilitator Superfamily GII88_02745 PF00440 Bacterial regulatory proteins, tetR family GII88_02755 PF00881 Nitroreductase family GII88_02760 PF03992 Antibiotic biosynthesis monooxygenase GII88_02765 PF01022 Bacterial regulatory protein, arsR family GII88_02770 PF00155 Aminotransferase class I and II GII88_02770 PF00392 Bacterial regulatory proteins, gntR family GII88_02775 PF00202 Aminotransferase class-III GII88_02780 PF13520 Amino acid permease GII88_02785 PF00171 Aldehyde dehydrogenase family GII88_02790 PF00892 EamA-like transporter family GII88_02800 PF07987 Domain of unkown function (DUF1775) GII88_02805 PF13115 YtkA-like GII88_02805 PF04234 CopC domain GII88_02805 PF05425 Copper resistance protein D GII88_02810 PF05573 NosL GII88_02810 PF08220 DeoR-like helix-turn-helix domain GII88_02815 PF18267 Rubredoxin NAD+ reductase C-terminal domain GII88_02815 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GII88_02815 PF04324 BFD-like [2Fe-2S] binding domain GII88_02815 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_02820 PF00384 Molybdopterin oxidoreductase GII88_02820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GII88_02820 PF01568 Molydopterin dinucleotide binding domain GII88_02825 PF18267 Rubredoxin NAD+ reductase C-terminal domain GII88_02825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GII88_02825 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_02825 PF04324 BFD-like [2Fe-2S] binding domain GII88_02825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GII88_02830 PF00355 Rieske [2Fe-2S] domain GII88_02835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GII88_02840 PF00392 Bacterial regulatory proteins, gntR family GII88_02840 PF07729 FCD domain GII88_02845 PF00939 Sodium:sulfate symporter transmembrane region GII88_02850 PF07977 FabA-like domain GII88_02855 PF07977 FabA-like domain GII88_02860 PF01980 tRNA-methyltransferase O GII88_02870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_02885 PF00456 Transketolase, thiamine diphosphate binding domain GII88_02890 PF02780 Transketolase, C-terminal domain GII88_02890 PF02779 Transketolase, pyrimidine binding domain GII88_02900 PF03746 LamB/YcsF family GII88_02905 PF01566 Natural resistance-associated macrophage protein GII88_02910 PF07286 Protein of unknown function (DUF1445) GII88_02915 PF02682 Carboxyltransferase domain, subdomain C and D GII88_02920 PF02626 Carboxyltransferase domain, subdomain A and B GII88_02925 PF01614 Bacterial transcriptional regulator GII88_02925 PF09339 IclR helix-turn-helix domain GII88_02930 PF13472 GDSL-like Lipase/Acylhydrolase family GII88_02935 PF02378 Phosphotransferase system, EIIC GII88_02935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_02940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_02945 PF01232 Mannitol dehydrogenase Rossmann domain GII88_02945 PF08125 Mannitol dehydrogenase C-terminal domain GII88_02950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_02950 PF05043 Mga helix-turn-helix domain GII88_02950 PF00874 PRD domain GII88_02950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_02950 PF08279 HTH domain GII88_02970 PF16242 Pyridoxamine 5'-phosphate oxidase like GII88_02975 PF10997 Alternate to MurJ GII88_02980 PF03816 Cell envelope-related transcriptional attenuator domain GII88_02985 PF12823 Domain of unknown function (DUF3817) GII88_02995 PF01037 Lrp/AsnC ligand binding domain GII88_03000 PF01131 DNA topoisomerase GII88_03000 PF01751 Toprim domain GII88_03005 PF13520 Amino acid permease GII88_03010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GII88_03010 PF00205 Thiamine pyrophosphate enzyme, central domain GII88_03010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GII88_03015 PF18416 N-acetylglucosamine binding protein domain 2 GII88_03015 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading GII88_03025 PF13302 Acetyltransferase (GNAT) domain GII88_03030 PF01566 Natural resistance-associated macrophage protein GII88_03035 PF04226 Transglycosylase associated protein GII88_03040 PF10415 Fumarase C C-terminus GII88_03040 PF00206 Lyase GII88_03045 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase GII88_03050 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) GII88_03055 PF12787 EcsC protein family GII88_03065 PF07883 Cupin domain GII88_03070 PF00477 Small hydrophilic plant seed protein GII88_03070 PF10685 Stress-induced bacterial acidophilic repeat motif GII88_03075 PF01594 AI-2E family transporter GII88_03080 PF00375 Sodium:dicarboxylate symporter family GII88_03085 PF00005 ABC transporter GII88_03100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GII88_03100 PF08028 Acyl-CoA dehydrogenase, C-terminal domain GII88_03100 PF02770 Acyl-CoA dehydrogenase, middle domain GII88_03105 PF13040 Fur-regulated basic protein B GII88_03115 PF00085 Thioredoxin GII88_03120 PF01820 D-ala D-ala ligase N-terminus GII88_03120 PF07478 D-ala D-ala ligase C-terminus GII88_03125 PF01225 Mur ligase family, catalytic domain GII88_03125 PF08245 Mur ligase middle domain GII88_03125 PF02875 Mur ligase family, glutamate ligase domain GII88_03130 PF12146 Serine aminopeptidase, S33 GII88_03135 PF00270 DEAD/DEAH box helicase GII88_03135 PF00271 Helicase conserved C-terminal domain GII88_03140 PF03703 Bacterial PH domain GII88_03145 PF03703 Bacterial PH domain GII88_03150 PF01694 Rhomboid family GII88_03160 PF01168 Alanine racemase, N-terminal domain GII88_03160 PF00842 Alanine racemase, C-terminal domain GII88_03165 PF01402 Ribbon-helix-helix protein, copG family GII88_03170 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system GII88_03175 PF08678 Rsbr N terminal GII88_03175 PF01740 STAS domain GII88_03180 PF01740 STAS domain GII88_03185 PF13581 Histidine kinase-like ATPase domain GII88_03190 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain GII88_03190 PF07228 Stage II sporulation protein E (SpoIIE) GII88_03195 PF01740 STAS domain GII88_03200 PF13581 Histidine kinase-like ATPase domain GII88_03205 PF04542 Sigma-70 region 2 GII88_03205 PF04545 Sigma-70, region 4 GII88_03205 PF04539 Sigma-70 region 3 GII88_03210 PF07228 Stage II sporulation protein E (SpoIIE) GII88_03215 PF16921 Tex protein YqgF-like domain GII88_03215 PF17674 HHH domain GII88_03215 PF00575 S1 RNA binding domain GII88_03215 PF09371 Tex-like protein N-terminal domain GII88_03220 PF00440 Bacterial regulatory proteins, tetR family GII88_03225 PF03176 MMPL family GII88_03235 PF10263 SprT-like family GII88_03280 PF01381 Helix-turn-helix GII88_03285 PF00487 Fatty acid desaturase GII88_03290 PF00313 'Cold-shock' DNA-binding domain GII88_03295 PF08240 Alcohol dehydrogenase GroES-like domain GII88_03295 PF00107 Zinc-binding dehydrogenase GII88_03310 PF01047 MarR family GII88_03315 PF00583 Acetyltransferase (GNAT) family GII88_03320 PF04299 Putative FMN-binding domain GII88_03330 PF01638 HxlR-like helix-turn-helix GII88_03335 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GII88_03335 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GII88_03345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_03345 PF03466 LysR substrate binding domain GII88_03360 PF04199 Putative cyclase GII88_03365 PF00324 Amino acid permease GII88_03380 PF04542 Sigma-70 region 2 GII88_03380 PF08281 Sigma-70, region 4 GII88_03385 PF11738 Protein of unknown function (DUF3298) GII88_03385 PF13739 Deacetylase PdaC GII88_03390 PF01757 Acyltransferase family GII88_03395 PF07690 Major Facilitator Superfamily GII88_03400 PF06580 Histidine kinase GII88_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_03405 PF04397 LytTr DNA-binding domain GII88_03405 PF00072 Response regulator receiver domain GII88_03410 PF00746 LPXTG cell wall anchor motif GII88_03410 PF17210 SdrD B-like domain GII88_03410 PF10425 C-terminus of bacterial fibrinogen-binding adhesin GII88_03410 PF04650 YSIRK type signal peptide GII88_03410 PF17961 Bacterial Ig domain GII88_03415 PF04203 Sortase domain GII88_03425 PF00083 Sugar (and other) transporter GII88_03465 PF00586 AIR synthase related protein, N-terminal domain GII88_03465 PF02769 AIR synthase related protein, C-terminal domain GII88_03470 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GII88_03475 PF00814 Glycoprotease family GII88_03480 PF00583 Acetyltransferase (GNAT) family GII88_03485 PF00814 Glycoprotease family GII88_03490 PF00005 ABC transporter GII88_03490 PF16326 ABC transporter C-terminal domain GII88_03490 PF12848 ABC transporter GII88_03495 PF01967 MoaC family GII88_03500 PF06971 Putative DNA-binding protein N-terminus GII88_03500 PF02629 CoA binding domain GII88_03505 PF02416 mttA/Hcf106 family GII88_03510 PF00902 Sec-independent protein translocase protein (TatC) GII88_03515 PF14146 Domain of unknown function (DUF4305) GII88_03520 PF02517 CPBP intramembrane metalloprotease GII88_03525 PF00166 Chaperonin 10 Kd subunit GII88_03530 PF00118 TCP-1/cpn60 chaperonin family GII88_03570 PF04294 VanW like protein GII88_03575 PF10787 Uncharacterised protein from bacillus cereus group GII88_03585 PF02586 SOS response associated peptidase (SRAP) GII88_03595 PF00440 Bacterial regulatory proteins, tetR family GII88_03595 PF17933 Tetracyclin repressor-like, C-terminal domain GII88_03600 PF00391 PEP-utilising enzyme, mobile domain GII88_03600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GII88_03610 PF04343 Protein of unknown function, DUF488 GII88_03615 PF00106 short chain dehydrogenase GII88_03620 PF00135 Carboxylesterase family GII88_03625 PF07690 Major Facilitator Superfamily GII88_03630 PF04012 PspA/IM30 family GII88_03635 PF08271 TFIIB zinc-binding GII88_03640 PF04536 TPM domain GII88_03645 PF13421 SPFH domain-Band 7 family GII88_03655 PF01978 Sugar-specific transcriptional regulator TrmB GII88_03655 PF11495 Archaeal transcriptional regulator TrmB GII88_03660 PF01810 LysE type translocator GII88_03665 PF06803 Protein of unknown function (DUF1232) GII88_03670 PF01098 Cell cycle protein GII88_03675 PF01098 Cell cycle protein GII88_03700 PF01522 Polysaccharide deacetylase GII88_03700 PF11738 Protein of unknown function (DUF3298) GII88_03700 PF13739 Deacetylase PdaC GII88_03705 PF09154 Domain of unknown function (DUF1939) GII88_03705 PF00128 Alpha amylase, catalytic domain GII88_03710 PF00356 Bacterial regulatory proteins, lacI family GII88_03715 PF02903 Alpha amylase, N-terminal ig-like domain GII88_03715 PF00128 Alpha amylase, catalytic domain GII88_03720 PF13416 Bacterial extracellular solute-binding protein GII88_03725 PF00528 Binding-protein-dependent transport system inner membrane component GII88_03730 PF00528 Binding-protein-dependent transport system inner membrane component GII88_03735 PF06691 Protein of unknown function (DUF1189) GII88_03740 PF03633 Glycosyl hydrolase family 65, C-terminal domain GII88_03740 PF03636 Glycosyl hydrolase family 65, N-terminal domain GII88_03740 PF03632 Glycosyl hydrolase family 65 central catalytic domain GII88_03745 PF16657 Maltogenic Amylase, C-terminal domain GII88_03745 PF00128 Alpha amylase, catalytic domain GII88_03750 PF13419 Haloacid dehalogenase-like hydrolase GII88_03755 PF00579 tRNA synthetases class I (W and Y) GII88_03755 PF01479 S4 domain GII88_03760 PF01047 MarR family GII88_03775 PF03330 Lytic transglycolase GII88_03780 PF07676 WD40-like Beta Propeller Repeat GII88_03785 PF13170 Protein of unknown function (DUF4003) GII88_03800 PF10502 Signal peptidase, peptidase S26 GII88_03810 PF13460 NAD(P)H-binding GII88_03815 PF12833 Helix-turn-helix domain GII88_03820 PF00394 Multicopper oxidase GII88_03820 PF07732 Multicopper oxidase GII88_03820 PF07731 Multicopper oxidase GII88_03835 PF16916 Dimerisation domain of Zinc Transporter GII88_03835 PF01545 Cation efflux family GII88_03840 PF17863 AAA lid domain GII88_03840 PF07726 ATPase family associated with various cellular activities (AAA) GII88_03845 PF01882 Protein of unknown function DUF58 GII88_03850 PF11992 Domain of unknown function (DUF3488) GII88_03850 PF01841 Transglutaminase-like superfamily GII88_03850 PF13559 Domain of unknown function (DUF4129) GII88_03855 PF00958 GMP synthase C terminal domain GII88_03855 PF00117 Glutamine amidotransferase class-I GII88_03855 PF02540 NAD synthase GII88_03865 PF00860 Permease family GII88_03875 PF13076 Fur-regulated basic protein A GII88_03880 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GII88_03885 PF14044 NETI protein GII88_03890 PF00731 AIR carboxylase GII88_03895 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GII88_03895 PF02222 ATP-grasp domain GII88_03900 PF10397 Adenylosuccinate lyase C-terminus GII88_03900 PF00206 Lyase GII88_03905 PF01259 SAICAR synthetase GII88_03910 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase GII88_03920 PF00586 AIR synthase related protein, N-terminal domain GII88_03920 PF02769 AIR synthase related protein, C-terminal domain GII88_03920 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GII88_03925 PF00156 Phosphoribosyl transferase domain GII88_03930 PF00586 AIR synthase related protein, N-terminal domain GII88_03930 PF02769 AIR synthase related protein, C-terminal domain GII88_03935 PF00551 Formyl transferase GII88_03940 PF01808 AICARFT/IMPCHase bienzyme GII88_03940 PF02142 MGS-like domain GII88_03945 PF02844 Phosphoribosylglycinamide synthetase, N domain GII88_03945 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GII88_03945 PF02843 Phosphoribosylglycinamide synthetase, C domain GII88_03960 PF00067 Cytochrome P450 GII88_03975 PF11127 Protein of unknown function (DUF2892) GII88_03980 PF01979 Amidohydrolase family GII88_03980 PF13382 Adenine deaminase C-terminal domain GII88_03985 PF11258 Protein of unknown function (DUF3048) N-terminal domain GII88_03985 PF17479 Protein of unknown function (DUF3048) C-terminal domain GII88_03990 PF01371 Trp repressor protein GII88_03995 PF01884 PcrB family GII88_04000 PF13361 UvrD-like helicase C-terminal domain GII88_04000 PF00580 UvrD/REP helicase N-terminal domain GII88_04005 PF12826 Helix-hairpin-helix motif GII88_04005 PF03120 NAD-dependent DNA ligase OB-fold domain GII88_04005 PF00533 BRCA1 C Terminus (BRCT) domain GII88_04005 PF01653 NAD-dependent DNA ligase adenylation domain GII88_04005 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GII88_04010 PF07537 CamS sex pheromone cAM373 precursor GII88_04020 PF14502 Helix-turn-helix domain GII88_04020 PF14503 YhfZ C-terminal domain GII88_04030 PF10941 Protein of unknown function DUF2620 GII88_04035 PF10797 Protein of unknown function GII88_04040 PF02126 Phosphotriesterase family GII88_04045 PF00155 Aminotransferase class I and II GII88_04050 PF01676 Metalloenzyme superfamily GII88_04055 PF01168 Alanine racemase, N-terminal domain GII88_04060 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GII88_04065 PF02308 MgtC family GII88_04070 PF00474 Sodium:solute symporter family GII88_04075 PF02686 Glu-tRNAGln amidotransferase C subunit GII88_04080 PF01425 Amidase GII88_04085 PF02934 GatB/GatE catalytic domain GII88_04085 PF02637 GatB domain GII88_04100 PF02156 Glycosyl hydrolase family 26 GII88_04105 PF00440 Bacterial regulatory proteins, tetR family GII88_04110 PF00873 AcrB/AcrD/AcrF family GII88_04120 PF13302 Acetyltransferase (GNAT) domain GII88_04125 PF01156 Inosine-uridine preferring nucleoside hydrolase GII88_04130 PF00781 Diacylglycerol kinase catalytic domain GII88_04135 PF01938 TRAM domain GII88_04135 PF05958 tRNA (Uracil-5-)-methyltransferase GII88_04145 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GII88_04145 PF00367 phosphotransferase system, EIIB GII88_04145 PF02378 Phosphotransferase system, EIIC GII88_04150 PF00232 Glycosyl hydrolase family 1 GII88_04155 PF00874 PRD domain GII88_04155 PF03123 CAT RNA binding domain GII88_04160 PF18801 response regulator aspartate phosphatase H, N terminal GII88_04175 PF01709 Transcriptional regulator GII88_04180 PF01381 Helix-turn-helix GII88_04190 PF00171 Aldehyde dehydrogenase family GII88_04195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_04200 PF00939 Sodium:sulfate symporter transmembrane region GII88_04205 PF12848 ABC transporter GII88_04205 PF00005 ABC transporter GII88_04205 PF16326 ABC transporter C-terminal domain GII88_04215 PF02649 Type I GTP cyclohydrolase folE2 GII88_04230 PF02492 CobW/HypB/UreG, nucleotide-binding domain GII88_04230 PF07683 Cobalamin synthesis protein cobW C-terminal domain GII88_04235 PF03744 6-carboxyhexanoate--CoA ligase GII88_04240 PF00202 Aminotransferase class-III GII88_04245 PF00155 Aminotransferase class I and II GII88_04255 PF04055 Radical SAM superfamily GII88_04255 PF06968 Biotin and Thiamin Synthesis associated domain GII88_04260 PF00067 Cytochrome P450 GII88_04270 PF13411 MerR HTH family regulatory protein GII88_04275 PF07690 Major Facilitator Superfamily GII88_04280 PF00005 ABC transporter GII88_04280 PF12848 ABC transporter GII88_04285 PF00270 DEAD/DEAH box helicase GII88_04285 PF00271 Helicase conserved C-terminal domain GII88_04290 PF00107 Zinc-binding dehydrogenase GII88_04290 PF16884 N-terminal domain of oxidoreductase GII88_04295 PF11486 Protein of unknown function (DUF3212) GII88_04300 PF11181 Heat induced stress protein YflT GII88_04305 PF00939 Sodium:sulfate symporter transmembrane region GII88_04325 PF00753 Metallo-beta-lactamase superfamily GII88_04335 PF02898 Nitric oxide synthase, oxygenase domain GII88_04340 PF07853 Protein of unknown function (DUF1648) GII88_04340 PF13630 SdpI/YhfL protein family GII88_04345 PF01022 Bacterial regulatory protein, arsR family GII88_04350 PF00708 Acylphosphatase GII88_04355 PF03475 3-alpha domain GII88_04355 PF03473 MOSC domain GII88_04360 PF11121 Protein of unknown function (DUF2639) GII88_04365 PF00557 Metallopeptidase family M24 GII88_04370 PF00884 Sulfatase GII88_04375 PF09350 Domain of unknown function (DUF1992) GII88_04380 PF01235 Sodium:alanine symporter family GII88_04385 PF00367 phosphotransferase system, EIIB GII88_04385 PF02378 Phosphotransferase system, EIIC GII88_04390 PF00128 Alpha amylase, catalytic domain GII88_04390 PF16657 Maltogenic Amylase, C-terminal domain GII88_04395 PF00392 Bacterial regulatory proteins, gntR family GII88_04395 PF07702 UTRA domain GII88_04420 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GII88_04425 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_04430 PF01370 NAD dependent epimerase/dehydratase family GII88_04440 PF00535 Glycosyl transferase family 2 GII88_04445 PF00535 Glycosyl transferase family 2 GII88_04445 PF13181 Tetratricopeptide repeat GII88_04450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GII88_04455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GII88_04455 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GII88_04460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GII88_04460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GII88_04460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GII88_04470 PF01638 HxlR-like helix-turn-helix GII88_04475 PF00881 Nitroreductase family GII88_04480 PF02872 5'-nucleotidase, C-terminal domain GII88_04480 PF00149 Calcineurin-like phosphoesterase GII88_04485 PF01965 DJ-1/PfpI family GII88_04490 PF06569 Protein of unknown function (DUF1128) GII88_04495 PF01235 Sodium:alanine symporter family GII88_04500 PF01451 Low molecular weight phosphotyrosine protein phosphatase GII88_04510 PF03631 Virulence factor BrkB GII88_04515 PF07690 Major Facilitator Superfamily GII88_04525 PF01699 Sodium/calcium exchanger protein GII88_04530 PF14167 YfkD-like protein GII88_04535 PF04055 Radical SAM superfamily GII88_04535 PF08756 YfkB-like domain GII88_04545 PF01522 Polysaccharide deacetylase GII88_04550 PF00465 Iron-containing alcohol dehydrogenase GII88_04560 PF01544 CorA-like Mg2+ transporter protein GII88_04565 PF00730 HhH-GPD superfamily base excision DNA repair protein GII88_04570 PF05958 tRNA (Uracil-5-)-methyltransferase GII88_04570 PF01938 TRAM domain GII88_04600 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase GII88_04605 PF10925 Protein of unknown function (DUF2680) GII88_04610 PF07690 Major Facilitator Superfamily GII88_04615 PF02378 Phosphotransferase system, EIIC GII88_04615 PF00367 phosphotransferase system, EIIB GII88_04620 PF03123 CAT RNA binding domain GII88_04620 PF00874 PRD domain GII88_04630 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) GII88_04635 PF00361 Proton-conducting membrane transporter GII88_04635 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GII88_04640 PF10057 Uncharacterized conserved protein (DUF2294) GII88_04650 PF00676 Dehydrogenase E1 component GII88_04655 PF02780 Transketolase, C-terminal domain GII88_04655 PF02779 Transketolase, pyrimidine binding domain GII88_04660 PF00364 Biotin-requiring enzyme GII88_04660 PF02817 e3 binding domain GII88_04660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GII88_04665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GII88_04665 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_04670 PF01590 GAF domain GII88_04670 PF02954 Bacterial regulatory protein, Fis family GII88_04670 PF00158 Sigma-54 interaction domain GII88_04675 PF02694 Uncharacterised BCR, YnfA/UPF0060 family GII88_04680 PF11975 Family 4 glycosyl hydrolase C-terminal domain GII88_04680 PF02056 Family 4 glycosyl hydrolase GII88_04685 PF01418 Helix-turn-helix domain, rpiR family GII88_04685 PF01380 SIS domain GII88_04690 PF02378 Phosphotransferase system, EIIC GII88_04690 PF00367 phosphotransferase system, EIIB GII88_04705 PF01638 HxlR-like helix-turn-helix GII88_04710 PF07681 DoxX GII88_04715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_04720 PF04616 Glycosyl hydrolases family 43 GII88_04720 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain GII88_04725 PF04616 Glycosyl hydrolases family 43 GII88_04725 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain GII88_04730 PF02311 AraC-like ligand binding domain GII88_04730 PF12833 Helix-turn-helix domain GII88_04735 PF13416 Bacterial extracellular solute-binding protein GII88_04740 PF02525 Flavodoxin-like fold GII88_04745 PF00293 NUDIX domain GII88_04750 PF12867 DinB superfamily GII88_04760 PF09924 Uncharacterised conserved protein (DUF2156) GII88_04760 PF03706 Lysylphosphatidylglycerol synthase TM region GII88_04765 PF02567 Phenazine biosynthesis-like protein GII88_04770 PF00881 Nitroreductase family GII88_04775 PF14151 YfhD-like protein GII88_04790 PF01370 NAD dependent epimerase/dehydratase family GII88_04790 PF08338 Domain of unknown function (DUF1731) GII88_04795 PF02631 RecX family GII88_04800 PF08838 Protein of unknown function (DUF1811) GII88_04810 PF08176 Small acid-soluble spore protein K family GII88_04815 PF14043 WVELL protein GII88_04825 PF00535 Glycosyl transferase family 2 GII88_04835 PF09586 Bacterial membrane protein YfhO GII88_04840 PF04307 LexA-binding, inner membrane-associated putative hydrolase GII88_04845 PF00730 HhH-GPD superfamily base excision DNA repair protein GII88_04845 PF14815 NUDIX domain GII88_04865 PF14182 YgaB-like protein GII88_04870 PF04167 Protein of unknown function (DUF402) GII88_04875 PF00005 ABC transporter GII88_04875 PF00664 ABC transporter transmembrane region GII88_04880 PF00005 ABC transporter GII88_04880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_04885 PF00005 ABC transporter GII88_04885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_04890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GII88_04905 PF06081 Aromatic acid exporter family member 1 GII88_04910 PF00202 Aminotransferase class-III GII88_04915 PF00578 AhpC/TSA family GII88_04920 PF01475 Ferric uptake regulator family GII88_04925 PF11023 Zinc-ribbon containing domain GII88_04930 PF14540 Nucleotidyltransferase-like GII88_04930 PF18576 Helix-turn-helix domain GII88_05030 PF03129 Anticodon binding domain GII88_05030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GII88_05030 PF02824 TGS domain GII88_05030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GII88_05040 PF01487 Type I 3-dehydroquinase GII88_05045 PF13667 ThiC-associated domain GII88_05045 PF01964 Radical SAM ThiC family GII88_05050 PF00005 ABC transporter GII88_05055 PF09084 NMT1/THI5 like GII88_05060 PF00528 Binding-protein-dependent transport system inner membrane component GII88_05065 PF00296 Luciferase-like monooxygenase GII88_05075 PF01381 Helix-turn-helix GII88_05085 PF00005 ABC transporter GII88_05085 PF13732 Domain of unknown function (DUF4162) GII88_05105 PF00253 Ribosomal protein S14p/S29e GII88_05120 PF08331 Domain of unknown function (DUF1730) GII88_05125 PF12671 Putative amidase domain GII88_05130 PF00588 SpoU rRNA Methylase family GII88_05135 PF13171 Protein of unknown function (DUF4004) GII88_05140 PF04519 Polymer-forming cytoskeletal GII88_05150 PF06798 PrkA serine protein kinase C-terminal domain GII88_05150 PF08298 PrkA AAA domain GII88_05155 PF04285 Protein of unknown function (DUF444) GII88_05165 PF07690 Major Facilitator Superfamily GII88_05170 PF03358 NADPH-dependent FMN reductase GII88_05185 PF00005 ABC transporter GII88_05190 PF00005 ABC transporter GII88_05195 PF00005 ABC transporter GII88_05200 PF12679 ABC-2 family transporter protein GII88_05205 PF00313 'Cold-shock' DNA-binding domain GII88_05210 PF09383 NIL domain GII88_05210 PF00005 ABC transporter GII88_05215 PF00528 Binding-protein-dependent transport system inner membrane component GII88_05220 PF03180 NLPA lipoprotein GII88_05225 PF00375 Sodium:dicarboxylate symporter family GII88_05235 PF00326 Prolyl oligopeptidase family GII88_05240 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GII88_05250 PF07875 Coat F domain GII88_05255 PF13188 PAS domain GII88_05255 PF00989 PAS fold GII88_05255 PF00512 His Kinase A (phospho-acceptor) domain GII88_05255 PF13426 PAS domain GII88_05255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_05260 PF02872 5'-nucleotidase, C-terminal domain GII88_05260 PF00565 Staphylococcal nuclease homologue GII88_05260 PF00746 LPXTG cell wall anchor motif GII88_05260 PF00149 Calcineurin-like phosphoesterase GII88_05265 PF04203 Sortase domain GII88_05270 PF00849 RNA pseudouridylate synthase GII88_05270 PF01479 S4 domain GII88_05275 PF17326 Family of unknown function (DUF5365) GII88_05280 PF00571 CBS domain GII88_05285 PF13419 Haloacid dehalogenase-like hydrolase GII88_05290 PF00795 Carbon-nitrogen hydrolase GII88_05290 PF00583 Acetyltransferase (GNAT) family GII88_05295 PF12848 ABC transporter GII88_05295 PF16326 ABC transporter C-terminal domain GII88_05295 PF00005 ABC transporter GII88_05300 PF01226 Formate/nitrite transporter GII88_05305 PF03547 Membrane transport protein GII88_05310 PF00107 Zinc-binding dehydrogenase GII88_05310 PF08240 Alcohol dehydrogenase GroES-like domain GII88_05315 PF04309 Glycerol-3-phosphate responsive antiterminator GII88_05320 PF00230 Major intrinsic protein GII88_05325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GII88_05325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GII88_05330 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GII88_05330 PF01266 FAD dependent oxidoreductase GII88_05335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GII88_05335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GII88_05335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GII88_05335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GII88_05350 PF07730 Histidine kinase GII88_05350 PF13185 GAF domain GII88_05355 PF00196 Bacterial regulatory proteins, luxR family GII88_05355 PF00072 Response regulator receiver domain GII88_05360 PF03358 NADPH-dependent FMN reductase GII88_05365 PF14148 YhdB-like protein GII88_05370 PF13028 Protein of unknown function (DUF3889) GII88_05375 PF02082 Transcriptional regulator GII88_05380 PF00175 Oxidoreductase NAD-binding domain GII88_05380 PF00042 Globin GII88_05380 PF00970 Oxidoreductase FAD-binding domain GII88_05385 PF04293 SpoVR like protein GII88_05390 PF01476 LysM domain GII88_05390 PF00877 NlpC/P60 family GII88_05395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_05395 PF03466 LysR substrate binding domain GII88_05400 PF00285 Citrate synthase, C-terminal domain GII88_05405 PF07995 Glucose / Sorbosone dehydrogenase GII88_05415 PF00209 Sodium:neurotransmitter symporter family GII88_05425 PF12833 Helix-turn-helix domain GII88_05425 PF06445 GyrI-like small molecule binding domain GII88_05430 PF00392 Bacterial regulatory proteins, gntR family GII88_05430 PF00155 Aminotransferase class I and II GII88_05440 PF17453 Sigma-M inhibitor GII88_05445 PF13800 Sigma factor regulator N-terminal GII88_05445 PF13791 Sigma factor regulator C-terminal GII88_05450 PF08281 Sigma-70, region 4 GII88_05450 PF04542 Sigma-70 region 2 GII88_05455 PF07883 Cupin domain GII88_05465 PF01553 Acyltransferase GII88_05470 PF05656 Protein of unknown function (DUF805) GII88_05480 PF00440 Bacterial regulatory proteins, tetR family GII88_05485 PF00571 CBS domain GII88_05485 PF03471 Transporter associated domain GII88_05485 PF01595 Cyclin M transmembrane N-terminal domain GII88_05490 PF13411 MerR HTH family regulatory protein GII88_05495 PF01595 Cyclin M transmembrane N-terminal domain GII88_05495 PF00571 CBS domain GII88_05495 PF03471 Transporter associated domain GII88_05510 PF05036 Sporulation related domain GII88_05510 PF01520 N-acetylmuramoyl-L-alanine amidase GII88_05515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GII88_05520 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GII88_05525 PF03009 Glycerophosphoryl diester phosphodiesterase family GII88_05530 PF17444 Uncharacterized YhdX-like GII88_05535 PF00924 Mechanosensitive ion channel GII88_05540 PF02146 Sir2 family GII88_05550 PF01522 Polysaccharide deacetylase GII88_05555 PF01063 Amino-transferase class IV GII88_05560 PF03553 Na+/H+ antiporter family GII88_05565 PF01263 Aldose 1-epimerase GII88_05570 PF16302 Domain of unknown function (DUF4944) GII88_05590 PF00582 Universal stress protein family GII88_05595 PF00664 ABC transporter transmembrane region GII88_05595 PF00005 ABC transporter GII88_05600 PF00005 ABC transporter GII88_05600 PF00664 ABC transporter transmembrane region GII88_05605 PF13460 NAD(P)H-binding GII88_05610 PF00269 Small, acid-soluble spore proteins, alpha/beta type GII88_05620 PF17912 MalK OB fold domain GII88_05620 PF03459 TOBE domain GII88_05620 PF00005 ABC transporter GII88_05625 PF13556 PucR C-terminal helix-turn-helix domain GII88_05630 PF17277 Family of unknown function (DUF5342) GII88_05635 PF14398 YheC/D like ATP-grasp GII88_05640 PF14398 YheC/D like ATP-grasp GII88_05645 PF04286 Protein of unknown function (DUF445) GII88_05650 PF06133 Control of competence regulator ComK, YlbF/YmcA GII88_05665 PF04055 Radical SAM superfamily GII88_05670 PF00999 Sodium/hydrogen exchanger family GII88_05675 PF02080 TrkA-C domain GII88_05685 PF00378 Enoyl-CoA hydratase/isomerase GII88_05690 PF18801 response regulator aspartate phosphatase H, N terminal GII88_05700 PF14120 YhzD-like protein GII88_05705 PF13732 Domain of unknown function (DUF4162) GII88_05705 PF00005 ABC transporter GII88_05715 PF00149 Calcineurin-like phosphoesterase GII88_05725 PF01966 HD domain GII88_05730 PF14147 Sporulation protein YhaL GII88_05740 PF09680 Family of unknown function GII88_05755 PF11667 Putative zincin peptidase GII88_05760 PF08963 Protein of unknown function (DUF1878) GII88_05765 PF01047 MarR family GII88_05770 PF12732 YtxH-like protein GII88_05780 PF17099 Tryptophan transporter TrpP GII88_05785 PF00266 Aminotransferase class-V GII88_05790 PF01230 HIT domain GII88_05795 PF00005 ABC transporter GII88_05800 PF05975 Bacterial ABC transporter protein EcsB GII88_05805 PF12787 EcsC protein family GII88_05810 PF07687 Peptidase dimerisation domain GII88_05810 PF01546 Peptidase family M20/M25/M40 GII88_05820 PF03992 Antibiotic biosynthesis monooxygenase GII88_05825 PF00905 Penicillin binding protein transpeptidase domain GII88_05825 PF00912 Transglycosylase GII88_05830 PF01208 Uroporphyrinogen decarboxylase (URO-D) GII88_05845 PF17932 Tetracyclin repressor-like, C-terminal domain GII88_05845 PF00440 Bacterial regulatory proteins, tetR family GII88_05855 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GII88_05855 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GII88_05860 PF05343 M42 glutamyl aminopeptidase GII88_05870 PF00375 Sodium:dicarboxylate symporter family GII88_05875 PF14149 YhfH-like protein GII88_05880 PF12706 Beta-lactamase superfamily domain GII88_05885 PF03099 Biotin/lipoate A/B protein ligase family GII88_05885 PF10437 Bacterial lipoate protein ligase C-terminus GII88_05890 PF00501 AMP-binding enzyme GII88_05890 PF13193 AMP-binding enzyme C-terminal domain GII88_05900 PF07883 Cupin domain GII88_05900 PF01381 Helix-turn-helix GII88_05915 PF01435 Peptidase family M48 GII88_05915 PF16491 CAAX prenyl protease N-terminal, five membrane helices GII88_05925 PF00892 EamA-like transporter family GII88_05930 PF01497 Periplasmic binding protein GII88_05935 PF01032 FecCD transport family GII88_05940 PF01032 FecCD transport family GII88_05945 PF00300 Histidine phosphatase superfamily (branch 1) GII88_05950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_05955 PF01266 FAD dependent oxidoreductase GII88_05955 PF00355 Rieske [2Fe-2S] domain GII88_05965 PF08858 IDEAL domain GII88_05970 PF06338 ComK protein GII88_05980 PF09335 SNARE associated Golgi protein GII88_05985 PF10502 Signal peptidase, peptidase S26 GII88_05990 PF00082 Subtilase family GII88_06000 PF07905 Purine catabolism regulatory protein-like family GII88_06000 PF13556 PucR C-terminal helix-turn-helix domain GII88_06000 PF17853 GGDEF-like domain GII88_06010 PF01979 Amidohydrolase family GII88_06015 PF01546 Peptidase family M20/M25/M40 GII88_06020 PF07883 Cupin domain GII88_06020 PF05899 Protein of unknown function (DUF861) GII88_06025 PF02615 Malate/L-lactate dehydrogenase GII88_06030 PF02615 Malate/L-lactate dehydrogenase GII88_06035 PF00549 CoA-ligase GII88_06035 PF02629 CoA binding domain GII88_06040 PF06545 Protein of unknown function (DUF1116) GII88_06050 PF00696 Amino acid kinase family GII88_06055 PF07690 Major Facilitator Superfamily GII88_06065 PF18801 response regulator aspartate phosphatase H, N terminal GII88_06105 PF02056 Family 4 glycosyl hydrolase GII88_06105 PF11975 Family 4 glycosyl hydrolase C-terminal domain GII88_06110 PF05145 Transition state regulatory protein AbrB GII88_06115 PF11007 Spore coat associated protein JA (CotJA) GII88_06120 PF12652 CotJB protein GII88_06125 PF05067 Manganese containing catalase GII88_06130 PF00501 AMP-binding enzyme GII88_06130 PF13193 AMP-binding enzyme C-terminal domain GII88_06135 PF07690 Major Facilitator Superfamily GII88_06145 PF00512 His Kinase A (phospho-acceptor) domain GII88_06145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_06145 PF16736 Single Cache-like GII88_06145 PF00989 PAS fold GII88_06150 PF00486 Transcriptional regulatory protein, C terminal GII88_06150 PF00072 Response regulator receiver domain GII88_06155 PF02915 Rubrerythrin GII88_06165 PF00528 Binding-protein-dependent transport system inner membrane component GII88_06170 PF12705 PD-(D/E)XK nuclease superfamily GII88_06175 PF12705 PD-(D/E)XK nuclease superfamily GII88_06175 PF00580 UvrD/REP helicase N-terminal domain GII88_06175 PF13361 UvrD-like helicase C-terminal domain GII88_06180 PF00149 Calcineurin-like phosphoesterase GII88_06180 PF12320 Type 5 capsule protein repressor C-terminal domain GII88_06185 PF13476 AAA domain GII88_06190 PF10676 Spore germination protein gerPA/gerPF GII88_06195 PF10970 Spore germination protein GerPE GII88_06205 PF10737 Spore germination protein GerPC GII88_06210 PF10803 Spore germination GerPB GII88_06215 PF10676 Spore germination protein gerPA/gerPF GII88_06220 PF12650 Domain of unknown function (DUF3784) GII88_06225 PF09388 Spo0E like sporulation regulatory protein GII88_06230 PF08757 CotH kinase protein GII88_06240 PF01557 Fumarylacetoacetate (FAA) hydrolase family GII88_06245 PF03193 RsgA GTPase GII88_06250 PF07457 Protein of unknown function (DUF1516) GII88_06255 PF10949 Protein of unknown function (DUF2777) GII88_06260 PF00733 Asparagine synthase GII88_06260 PF13537 Glutamine amidotransferase domain GII88_06270 PF00543 Nitrogen regulatory protein P-II GII88_06275 PF01554 MatE GII88_06280 PF12833 Helix-turn-helix domain GII88_06280 PF02311 AraC-like ligand binding domain GII88_06290 PF00356 Bacterial regulatory proteins, lacI family GII88_06295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GII88_06295 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GII88_06300 PF00155 Aminotransferase class I and II GII88_06300 PF00392 Bacterial regulatory proteins, gntR family GII88_06305 PF00202 Aminotransferase class-III GII88_06310 PF00282 Pyridoxal-dependent decarboxylase conserved domain GII88_06315 PF04183 IucA / IucC family GII88_06315 PF06276 Ferric iron reductase FhuF-like transporter GII88_06325 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) GII88_06330 PF04183 IucA / IucC family GII88_06330 PF06276 Ferric iron reductase FhuF-like transporter GII88_06335 PF13673 Acetyltransferase (GNAT) domain GII88_06345 PF08279 HTH domain GII88_06345 PF13280 WYL domain GII88_06350 PF02310 B12 binding domain GII88_06350 PF02965 Vitamin B12 dependent methionine synthase, activation domain GII88_06350 PF00809 Pterin binding enzyme GII88_06350 PF02574 Homocysteine S-methyltransferase GII88_06350 PF02607 B12 binding domain GII88_06355 PF02574 Homocysteine S-methyltransferase GII88_06355 PF02219 Methylenetetrahydrofolate reductase GII88_06360 PF04461 Protein of unknown function (DUF520) GII88_06365 PF13509 S1 domain GII88_06365 PF17783 CvfB-like winged helix domain GII88_06380 PF02645 Uncharacterised protein, DegV family COG1307 GII88_06385 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GII88_06385 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GII88_06390 PF12690 Intracellular proteinase inhibitor GII88_06395 PF00478 IMP dehydrogenase / GMP reductase domain GII88_06400 PF12758 Protein of unknown function (DUF3813) GII88_06410 PF00326 Prolyl oligopeptidase family GII88_06415 PF01883 Iron-sulfur cluster assembly protein GII88_06425 PF01118 Semialdehyde dehydrogenase, NAD binding domain GII88_06425 PF02774 Semialdehyde dehydrogenase, dimerisation domain GII88_06430 PF01960 ArgJ family GII88_06435 PF00696 Amino acid kinase family GII88_06440 PF00202 Aminotransferase class-III GII88_06445 PF00117 Glutamine amidotransferase class-I GII88_06445 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GII88_06450 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GII88_06450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GII88_06455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GII88_06455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GII88_06460 PF02673 Bacitracin resistance protein BacA GII88_06465 PF14168 YjzC-like protein GII88_06485 PF02608 ABC transporter substrate-binding protein PnrA-like GII88_06490 PF10815 ComZ GII88_06500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GII88_06500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GII88_06505 PF02801 Beta-ketoacyl synthase, C-terminal domain GII88_06505 PF00109 Beta-ketoacyl synthase, N-terminal domain GII88_06510 PF10026 Predicted Zn-dependent protease (DUF2268) GII88_06515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_06515 PF00005 ABC transporter GII88_06520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_06520 PF00005 ABC transporter GII88_06525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GII88_06530 PF00528 Binding-protein-dependent transport system inner membrane component GII88_06535 PF12911 N-terminal TM domain of oligopeptide transport permease C GII88_06535 PF00528 Binding-protein-dependent transport system inner membrane component GII88_06545 PF02441 Flavoprotein GII88_06555 PF12227 Protein of unknown function (DUF3603) GII88_06560 PF00579 tRNA synthetases class I (W and Y) GII88_06565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GII88_06570 PF00528 Binding-protein-dependent transport system inner membrane component GII88_06575 PF12911 N-terminal TM domain of oligopeptide transport permease C GII88_06575 PF00528 Binding-protein-dependent transport system inner membrane component GII88_06580 PF00005 ABC transporter GII88_06580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_06585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_06585 PF00005 ABC transporter GII88_06590 PF13508 Acetyltransferase (GNAT) domain GII88_06595 PF03960 ArsC family GII88_06600 PF03741 Integral membrane protein TerC family GII88_06610 PF05389 Negative regulator of genetic competence (MecA) GII88_06625 PF01970 Tripartite tricarboxylate transporter TctA family GII88_06630 PF12431 Transcriptional regulator GII88_06630 PF00072 Response regulator receiver domain GII88_06635 PF00989 PAS fold GII88_06635 PF17203 Single cache domain 3 GII88_06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_06635 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GII88_06640 PF06054 Competence protein CoiA-like family GII88_06645 PF08439 Oligopeptidase F GII88_06645 PF01432 Peptidase family M3 GII88_06655 PF01152 Bacterial-like globin GII88_06660 PF01464 Transglycosylase SLT domain GII88_06665 PF01928 CYTH domain GII88_06675 PF04607 Region found in RelA / SpoT proteins GII88_06680 PF01513 ATP-NAD kinase GII88_06685 PF00849 RNA pseudouridylate synthase GII88_06690 PF00149 Calcineurin-like phosphoesterase GII88_06700 PF00999 Sodium/hydrogen exchanger family GII88_06700 PF02254 TrkA-N domain GII88_06700 PF02080 TrkA-C domain GII88_06705 PF03070 TENA/THI-4/PQQC family GII88_06710 PF02581 Thiamine monophosphate synthase GII88_06715 PF01266 FAD dependent oxidoreductase GII88_06720 PF02597 ThiS family GII88_06725 PF05690 Thiazole biosynthesis protein ThiG GII88_06730 PF00899 ThiF family GII88_06735 PF08543 Phosphomethylpyrimidine kinase GII88_06745 PF14153 Spore coat protein CotO GII88_06750 PF10612 Spore coat protein Z GII88_06755 PF10612 Spore coat protein Z GII88_06760 PF07552 Spore Coat Protein X and V domain GII88_06770 PF07552 Spore Coat Protein X and V domain GII88_06775 PF07098 Protein of unknown function (DUF1360) GII88_06790 PF14069 Stage VI sporulation protein F GII88_06795 PF00580 UvrD/REP helicase N-terminal domain GII88_06795 PF13361 UvrD-like helicase C-terminal domain GII88_06805 PF09335 SNARE associated Golgi protein GII88_06810 PF16363 GDP-mannose 4,6 dehydratase GII88_06815 PF00483 Nucleotidyl transferase GII88_06820 PF04138 GtrA-like protein GII88_06825 PF13673 Acetyltransferase (GNAT) domain GII88_06835 PF00756 Putative esterase GII88_06855 PF01053 Cys/Met metabolism PLP-dependent enzyme GII88_06860 PF01053 Cys/Met metabolism PLP-dependent enzyme GII88_06865 PF05684 Protein of unknown function (DUF819) GII88_06880 PF11954 Domain of unknown function (DUF3471) GII88_06880 PF00144 Beta-lactamase GII88_06885 PF04616 Glycosyl hydrolases family 43 GII88_06905 PF12464 Maltose acetyltransferase GII88_06905 PF14602 Hexapeptide repeat of succinyl-transferase GII88_06915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_06915 PF03466 LysR substrate binding domain GII88_06920 PF00175 Oxidoreductase NAD-binding domain GII88_06920 PF00667 FAD binding domain GII88_06920 PF00258 Flavodoxin GII88_06925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GII88_06925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GII88_06935 PF03466 LysR substrate binding domain GII88_06935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_06940 PF00892 EamA-like transporter family GII88_06945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_06950 PF16800 IseA DL-endopeptidase inhibitor GII88_06955 PF06725 3D domain GII88_06955 PF01476 LysM domain GII88_06960 PF07690 Major Facilitator Superfamily GII88_06965 PF00440 Bacterial regulatory proteins, tetR family GII88_06980 PF04634 Protein of unknown function, DUF600 GII88_06985 PF04740 LXG domain of WXG superfamily GII88_06990 PF05908 Poly-gamma-glutamate hydrolase GII88_06995 PF06114 IrrE N-terminal-like domain GII88_07000 PF01381 Helix-turn-helix GII88_07020 PF01695 IstB-like ATP binding protein GII88_07030 PF17356 Phage-like element PBSX protein XtrA GII88_07035 PF08281 Sigma-70, region 4 GII88_07040 PF03592 Terminase small subunit GII88_07040 PF10668 Phage terminase small subunit GII88_07045 PF04466 Phage terminase large subunit GII88_07045 PF17288 Terminase RNAseH like domain GII88_07050 PF04860 Phage portal protein GII88_07055 PF14550 Putative phage serine protease XkdF GII88_07060 PF05065 Phage capsid family GII88_07065 PF11436 Protein of unknown function (DUF3199) GII88_07070 PF12206 Domain of unknown function (DUF3599) GII88_07075 PF04883 Bacteriophage HK97-gp10, putative tail-component GII88_07090 PF17482 Phage tail sheath C-terminal domain GII88_07090 PF17481 Phage tail sheath protein beta-sandwich domain GII88_07090 PF04984 Phage tail sheath protein subtilisin-like domain GII88_07095 PF09393 Phage tail tube protein GII88_07100 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC GII88_07110 PF01464 Transglycosylase SLT domain GII88_07115 PF01476 LysM domain GII88_07125 PF10844 Protein of unknown function (DUF2577) GII88_07130 PF10934 Protein of unknown function (DUF2634) GII88_07135 PF04865 Baseplate J-like protein GII88_07140 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) GII88_07160 PF10779 Haemolysin XhlA GII88_07165 PF04688 SPP1 phage holin GII88_07170 PF01510 N-acetylmuramoyl-L-alanine amidase GII88_07170 PF01471 Putative peptidoglycan binding domain GII88_07175 PF07729 FCD domain GII88_07175 PF00392 Bacterial regulatory proteins, gntR family GII88_07180 PF08240 Alcohol dehydrogenase GroES-like domain GII88_07180 PF00107 Zinc-binding dehydrogenase GII88_07185 PF03786 D-mannonate dehydratase (UxuA) GII88_07190 PF00106 short chain dehydrogenase GII88_07195 PF00107 Zinc-binding dehydrogenase GII88_07195 PF08240 Alcohol dehydrogenase GroES-like domain GII88_07200 PF07690 Major Facilitator Superfamily GII88_07205 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system GII88_07210 PF14171 Toxin SpoIISA, type II toxin-antitoxin system GII88_07215 PF01384 Phosphate transporter family GII88_07220 PF01865 Protein of unknown function DUF47 GII88_07230 PF04854 Protein of unknown function, DUF624 GII88_07235 PF02743 Cache domain GII88_07235 PF00672 HAMP domain GII88_07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_07235 PF06580 Histidine kinase GII88_07240 PF00072 Response regulator receiver domain GII88_07240 PF12833 Helix-turn-helix domain GII88_07245 PF13416 Bacterial extracellular solute-binding protein GII88_07250 PF00528 Binding-protein-dependent transport system inner membrane component GII88_07255 PF00528 Binding-protein-dependent transport system inner membrane component GII88_07260 PF07470 Glycosyl Hydrolase Family 88 GII88_07265 PF12833 Helix-turn-helix domain GII88_07270 PF13472 GDSL-like Lipase/Acylhydrolase family GII88_07275 PF09224 Domain of unknown function (DUF1961) GII88_07280 PF04854 Protein of unknown function, DUF624 GII88_07285 PF18370 Rhamnogalacturonan I lyases beta-sheet domain GII88_07295 PF13472 GDSL-like Lipase/Acylhydrolase family GII88_07300 PF18370 Rhamnogalacturonan I lyases beta-sheet domain GII88_07300 PF01839 FG-GAP repeat GII88_07305 PF00248 Aldo/keto reductase family GII88_07310 PF00657 GDSL-like Lipase/Acylhydrolase GII88_07315 PF02449 Beta-galactosidase GII88_07315 PF08533 Beta-galactosidase C-terminal domain GII88_07315 PF08532 Beta-galactosidase trimerisation domain GII88_07325 PF01547 Bacterial extracellular solute-binding protein GII88_07330 PF00528 Binding-protein-dependent transport system inner membrane component GII88_07335 PF00528 Binding-protein-dependent transport system inner membrane component GII88_07340 PF13520 Amino acid permease GII88_07345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_07355 PF13180 PDZ domain GII88_07360 PF14748 Pyrroline-5-carboxylate reductase dimerisation GII88_07360 PF03807 NADP oxidoreductase coenzyme F420-dependent GII88_07365 PF04951 D-aminopeptidase GII88_07370 PF00528 Binding-protein-dependent transport system inner membrane component GII88_07375 PF12911 N-terminal TM domain of oligopeptide transport permease C GII88_07375 PF00528 Binding-protein-dependent transport system inner membrane component GII88_07380 PF00005 ABC transporter GII88_07380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_07385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GII88_07390 PF17676 LD-carboxypeptidase C-terminal domain GII88_07390 PF02016 LD-carboxypeptidase N-terminal domain GII88_07400 PF00877 NlpC/P60 family GII88_07405 PF00005 ABC transporter GII88_07405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_07415 PF03061 Thioesterase superfamily GII88_07425 PF00544 Pectate lyase GII88_07445 PF12867 DinB superfamily GII88_07450 PF00893 Small Multidrug Resistance protein GII88_07455 PF00893 Small Multidrug Resistance protein GII88_07460 PF01842 ACT domain GII88_07460 PF00551 Formyl transferase GII88_07465 PF01472 PUA domain GII88_07465 PF00696 Amino acid kinase family GII88_07470 PF00171 Aldehyde dehydrogenase family GII88_07475 PF02566 OsmC-like protein GII88_07480 PF01047 MarR family GII88_07485 PF02566 OsmC-like protein GII88_07495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GII88_07500 PF00300 Histidine phosphatase superfamily (branch 1) GII88_07515 PF01717 Cobalamin-independent synthase, Catalytic domain GII88_07515 PF08267 Cobalamin-independent synthase, N-terminal domain GII88_07520 PF00082 Subtilase family GII88_07525 PF11132 Transcriptional regulator protein (SplA) GII88_07530 PF03448 MgtE intracellular N domain GII88_07530 PF00571 CBS domain GII88_07530 PF01769 Divalent cation transporter GII88_07540 PF13411 MerR HTH family regulatory protein GII88_07555 PF01047 MarR family GII88_07560 PF01068 ATP dependent DNA ligase domain GII88_07565 PF02735 Ku70/Ku80 beta-barrel domain GII88_07570 PF00563 EAL domain GII88_07570 PF00990 Diguanylate cyclase, GGDEF domain GII88_07570 PF03707 Bacterial signalling protein N terminal repeat GII88_07575 PF09335 SNARE associated Golgi protein GII88_07580 PF03741 Integral membrane protein TerC family GII88_07585 PF04542 Sigma-70 region 2 GII88_07590 PF12791 Anti-sigma factor N-terminus GII88_07595 PF00269 Small, acid-soluble spore proteins, alpha/beta type GII88_07600 PF08876 Domain of unknown function (DUF1836) GII88_07605 PF01435 Peptidase family M48 GII88_07610 PF02386 Cation transport protein GII88_07615 PF05223 NTF2-like N-terminal transpeptidase domain GII88_07615 PF03717 Penicillin-binding Protein dimerisation domain GII88_07615 PF00905 Penicillin binding protein transpeptidase domain GII88_07630 PF01757 Acyltransferase family GII88_07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_07635 PF00512 His Kinase A (phospho-acceptor) domain GII88_07635 PF00989 PAS fold GII88_07635 PF13188 PAS domain GII88_07635 PF13426 PAS domain GII88_07640 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GII88_07640 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GII88_07645 PF01008 Initiation factor 2 subunit family GII88_07650 PF01636 Phosphotransferase enzyme family GII88_07655 PF00795 Carbon-nitrogen hydrolase GII88_07660 PF00155 Aminotransferase class I and II GII88_07665 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain GII88_07665 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain GII88_07670 PF00596 Class II Aldolase and Adducin N-terminal domain GII88_07675 PF03079 ARD/ARD' family GII88_07680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_07685 PF06803 Protein of unknown function (DUF1232) GII88_07695 PF02743 Cache domain GII88_07695 PF00512 His Kinase A (phospho-acceptor) domain GII88_07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_07700 PF01047 MarR family GII88_07705 PF13677 Membrane MotB of proton-channel complex MotA/MotB GII88_07705 PF00691 OmpA family GII88_07710 PF01618 MotA/TolQ/ExbB proton channel family GII88_07715 PF07724 AAA domain (Cdc48 subfamily) GII88_07715 PF00004 ATPase family associated with various cellular activities (AAA) GII88_07715 PF10431 C-terminal, D2-small domain, of ClpB protein GII88_07715 PF17871 AAA lid domain GII88_07725 PF06508 Queuosine biosynthesis protein QueC GII88_07730 PF01242 6-pyruvoyl tetrahydropterin synthase GII88_07735 PF04055 Radical SAM superfamily GII88_07740 PF14489 QueF-like protein GII88_07750 PF05675 Protein of unknown function (DUF817) GII88_07755 PF13443 Cro/C1-type HTH DNA-binding domain GII88_07760 PF11188 Protein of unknown function (DUF2975) GII88_07790 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) GII88_07800 PF07486 Cell Wall Hydrolase GII88_07805 PF01943 Polysaccharide biosynthesis protein GII88_07810 PF00578 AhpC/TSA family GII88_07820 PF01321 Creatinase/Prolidase N-terminal domain GII88_07820 PF00557 Metallopeptidase family M24 GII88_07830 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GII88_07830 PF00356 Bacterial regulatory proteins, lacI family GII88_07835 PF00874 PRD domain GII88_07835 PF03123 CAT RNA binding domain GII88_07840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GII88_07840 PF00367 phosphotransferase system, EIIB GII88_07840 PF02378 Phosphotransferase system, EIIC GII88_07845 PF00381 PTS HPr component phosphorylation site GII88_07850 PF05524 PEP-utilising enzyme, N-terminal GII88_07850 PF00391 PEP-utilising enzyme, mobile domain GII88_07850 PF02896 PEP-utilising enzyme, TIM barrel domain GII88_07855 PF11132 Transcriptional regulator protein (SplA) GII88_07865 PF00583 Acetyltransferase (GNAT) family GII88_07870 PF00672 HAMP domain GII88_07870 PF02743 Cache domain GII88_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_07880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GII88_07880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GII88_07885 PF00188 Cysteine-rich secretory protein family GII88_07890 PF00905 Penicillin binding protein transpeptidase domain GII88_07890 PF03717 Penicillin-binding Protein dimerisation domain GII88_07895 PF00512 His Kinase A (phospho-acceptor) domain GII88_07895 PF00989 PAS fold GII88_07895 PF08447 PAS fold GII88_07895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_07900 PF00155 Aminotransferase class I and II GII88_07905 PF06271 RDD family GII88_07915 PF00072 Response regulator receiver domain GII88_07915 PF01584 CheW-like domain GII88_07920 PF14177 YkyB-like protein GII88_07925 PF07690 Major Facilitator Superfamily GII88_07930 PF03734 L,D-transpeptidase catalytic domain GII88_07930 PF01476 LysM domain GII88_07935 PF00149 Calcineurin-like phosphoesterase GII88_07935 PF10518 TAT (twin-arginine translocation) pathway signal sequence GII88_07945 PF00563 EAL domain GII88_07945 PF10388 EAL-domain associated signalling protein domain GII88_07955 PF08796 Protein of unknown function (DUF1797) GII88_07960 PF04308 Ribonuclease H-like GII88_07965 PF14156 Antirepressor AbbA GII88_07975 PF03466 LysR substrate binding domain GII88_07975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_07980 PF00258 Flavodoxin GII88_07990 PF00258 Flavodoxin GII88_07995 PF14602 Hexapeptide repeat of succinyl-transferase GII88_07995 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_07995 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal GII88_08000 PF07687 Peptidase dimerisation domain GII88_08000 PF01546 Peptidase family M20/M25/M40 GII88_08005 PF03698 Uncharacterised protein family (UPF0180) GII88_08010 PF10417 C-terminal domain of 1-Cys peroxiredoxin GII88_08010 PF00578 AhpC/TSA family GII88_08015 PF00578 AhpC/TSA family GII88_08030 PF12804 MobA-like NTP transferase domain GII88_08035 PF00899 ThiF family GII88_08040 PF03454 MoeA C-terminal region (domain IV) GII88_08040 PF00994 Probable molybdopterin binding domain GII88_08040 PF03453 MoeA N-terminal region (domain I and II) GII88_08045 PF03205 Molybdopterin guanine dinucleotide synthesis protein B GII88_08050 PF02391 MoaE protein GII88_08055 PF02597 ThiS family GII88_08065 PF00664 ABC transporter transmembrane region GII88_08065 PF00005 ABC transporter GII88_08070 PF00005 ABC transporter GII88_08070 PF00664 ABC transporter transmembrane region GII88_08075 PF04893 Yip1 domain GII88_08080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GII88_08085 PF00005 ABC transporter GII88_08090 PF02687 FtsX-like permease family GII88_08090 PF12704 MacB-like periplasmic core domain GII88_08095 PF00455 DeoR C terminal sensor domain GII88_08095 PF08220 DeoR-like helix-turn-helix domain GII88_08100 PF00294 pfkB family carbohydrate kinase GII88_08105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_08105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_08110 PF10502 Signal peptidase, peptidase S26 GII88_08125 PF00005 ABC transporter GII88_08125 PF12848 ABC transporter GII88_08135 PF02073 Thermophilic metalloprotease (M29) GII88_08140 PF17447 Uncharacterized YkpC-like GII88_08150 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GII88_08150 PF18277 AbrB C-terminal domain GII88_08155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_08155 PF00512 His Kinase A (phospho-acceptor) domain GII88_08155 PF00989 PAS fold GII88_08160 PF02254 TrkA-N domain GII88_08160 PF02080 TrkA-C domain GII88_08165 PF01979 Amidohydrolase family GII88_08165 PF13382 Adenine deaminase C-terminal domain GII88_08170 PF00753 Metallo-beta-lactamase superfamily GII88_08170 PF17770 Ribonuclease J C-terminal domain GII88_08170 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GII88_08190 PF01327 Polypeptide deformylase GII88_08200 PF10368 Putative cell-wall binding lipoprotein GII88_08205 PF00676 Dehydrogenase E1 component GII88_08210 PF02780 Transketolase, C-terminal domain GII88_08210 PF02779 Transketolase, pyrimidine binding domain GII88_08215 PF02817 e3 binding domain GII88_08215 PF00364 Biotin-requiring enzyme GII88_08215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GII88_08220 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_08220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GII88_08230 PF13790 SR1 protein GII88_08235 PF01276 Orn/Lys/Arg decarboxylase, major domain GII88_08235 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GII88_08240 PF05256 Uncharacterised protein family (UPF0223) GII88_08245 PF06335 Protein of unknown function (DUF1054) GII88_08255 PF00459 Inositol monophosphatase family GII88_08260 PF00583 Acetyltransferase (GNAT) family GII88_08275 PF08281 Sigma-70, region 4 GII88_08275 PF04542 Sigma-70 region 2 GII88_08280 PF13490 Putative zinc-finger GII88_08295 PF14036 YlaH-like protein GII88_08300 PF01047 MarR family GII88_08305 PF01494 FAD binding domain GII88_08310 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) GII88_08315 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GII88_08320 PF13638 PIN domain GII88_08320 PF02562 PhoH-like protein GII88_08330 PF04960 Glutaminase GII88_08335 PF07408 Protein of unknown function (DUF1507) GII88_08340 PF01098 Cell cycle protein GII88_08345 PF02785 Biotin carboxylase C-terminal domain GII88_08345 PF00289 Biotin carboxylase, N-terminal domain GII88_08345 PF00364 Biotin-requiring enzyme GII88_08345 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GII88_08345 PF00682 HMGL-like GII88_08345 PF02436 Conserved carboxylase domain GII88_08350 PF02628 Cytochrome oxidase assembly protein GII88_08355 PF01040 UbiA prenyltransferase family GII88_08360 PF00034 Cytochrome c GII88_08360 PF02790 Cytochrome C oxidase subunit II, transmembrane domain GII88_08360 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GII88_08365 PF00115 Cytochrome C and Quinol oxidase polypeptide I GII88_08370 PF00510 Cytochrome c oxidase subunit III GII88_08375 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GII88_08380 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) GII88_08385 PF08868 YugN-like family GII88_08390 PF00571 CBS domain GII88_08395 PF14504 CAP-associated N-terminal GII88_08395 PF00188 Cysteine-rich secretory protein family GII88_08400 PF14071 Putative coat protein GII88_08405 PF14003 YlbE-like protein GII88_08410 PF06133 Control of competence regulator ComK, YlbF/YmcA GII88_08415 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) GII88_08425 PF01467 Cytidylyltransferase-like GII88_08430 PF07670 Nucleoside recognition GII88_08435 PF05362 Lon protease (S16) C-terminal proteolytic domain GII88_08435 PF13180 PDZ domain GII88_08440 PF05636 HIGH Nucleotidyl Transferase GII88_08445 PF02620 Large ribosomal RNA subunit accumulation protein YceD GII88_08450 PF01783 Ribosomal L32p protein family GII88_08460 PF00583 Acetyltransferase (GNAT) family GII88_08465 PF02558 Ketopantoate reductase PanE/ApbA GII88_08465 PF08546 Ketopantoate reductase PanE/ApbA C terminal GII88_08470 PF10079 Bacillithiol biosynthesis BshC GII88_08475 PF02381 MraZ protein, putative antitoxin-like GII88_08480 PF01795 MraW methylase family GII88_08495 PF00905 Penicillin binding protein transpeptidase domain GII88_08495 PF03717 Penicillin-binding Protein dimerisation domain GII88_08495 PF03793 PASTA domain GII88_08500 PF08245 Mur ligase middle domain GII88_08500 PF01225 Mur ligase family, catalytic domain GII88_08500 PF02875 Mur ligase family, glutamate ligase domain GII88_08505 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 GII88_08505 PF00953 Glycosyl transferase family 4 GII88_08510 PF08245 Mur ligase middle domain GII88_08510 PF02875 Mur ligase family, glutamate ligase domain GII88_08515 PF01098 Cell cycle protein GII88_08520 PF04101 Glycosyltransferase family 28 C-terminal domain GII88_08520 PF03033 Glycosyltransferase family 28 N-terminal domain GII88_08525 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GII88_08525 PF01565 FAD binding domain GII88_08530 PF08478 POTRA domain, FtsQ-type GII88_08535 PF05949 Bacterial protein of unknown function (DUF881) GII88_08540 PF05949 Bacterial protein of unknown function (DUF881) GII88_08545 PF06947 Protein of unknown function (DUF1290) GII88_08550 PF02491 SHS2 domain inserted in FTSA GII88_08555 PF00091 Tubulin/FtsZ family, GTPase domain GII88_08555 PF12327 FtsZ family, C-terminal domain GII88_08565 PF05922 Peptidase inhibitor I9 GII88_08565 PF00082 Subtilase family GII88_08570 PF00082 Subtilase family GII88_08570 PF05922 Peptidase inhibitor I9 GII88_08575 PF03419 Sporulation factor SpoIIGA GII88_08580 PF04545 Sigma-70, region 4 GII88_08580 PF04542 Sigma-70 region 2 GII88_08585 PF04539 Sigma-70 region 3 GII88_08585 PF04545 Sigma-70, region 4 GII88_08585 PF04542 Sigma-70 region 2 GII88_08590 PF00005 ABC transporter GII88_08595 PF08241 Methyltransferase domain GII88_08600 PF05239 PRC-barrel domain GII88_08610 PF01168 Alanine racemase, N-terminal domain GII88_08615 PF04472 Cell division protein SepF GII88_08620 PF02325 YGGT family GII88_08625 PF17774 Putative RNA-binding domain in YlmH GII88_08625 PF01479 S4 domain GII88_08630 PF05103 DivIVA protein GII88_08635 PF06827 Zinc finger found in FPG and IleRS GII88_08635 PF00133 tRNA synthetases class I (I, L, M and V) GII88_08635 PF08264 Anticodon-binding domain of tRNA GII88_08640 PF01258 Prokaryotic dksA/traR C4-type zinc finger GII88_08645 PF01252 Signal peptidase (SPase) II GII88_08650 PF00849 RNA pseudouridylate synthase GII88_08650 PF01479 S4 domain GII88_08655 PF00156 Phosphoribosyl transferase domain GII88_08660 PF00860 Permease family GII88_08665 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GII88_08665 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GII88_08670 PF01979 Amidohydrolase family GII88_08675 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GII88_08675 PF00117 Glutamine amidotransferase class-I GII88_08680 PF02142 MGS-like domain GII88_08680 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GII88_08680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GII88_08685 PF00175 Oxidoreductase NAD-binding domain GII88_08685 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B GII88_08690 PF01180 Dihydroorotate dehydrogenase GII88_08695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GII88_08700 PF00156 Phosphoribosyl transferase domain GII88_08710 PF01507 Phosphoadenosine phosphosulfate reductase family GII88_08715 PF01384 Phosphate transporter family GII88_08720 PF01747 ATP-sulfurylase GII88_08720 PF14306 PUA-like domain GII88_08730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GII88_08735 PF01903 CbiX GII88_08750 PF00690 Cation transporter/ATPase, N-terminus GII88_08750 PF00689 Cation transporting ATPase, C-terminus GII88_08755 PF03755 YicC-like family, N-terminal region GII88_08755 PF08340 Domain of unknown function (DUF1732) GII88_08760 PF04025 Domain of unknown function (DUF370) GII88_08765 PF00625 Guanylate kinase GII88_08770 PF01192 RNA polymerase Rpb6 GII88_08775 PF02441 Flavoprotein GII88_08775 PF04127 DNA / pantothenate metabolism flavoprotein GII88_08780 PF17764 3′ DNA-binding domain (3′BD) GII88_08780 PF04851 Type III restriction enzyme, res subunit GII88_08780 PF18074 Primosomal protein N C-terminal domain GII88_08780 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GII88_08780 PF00271 Helicase conserved C-terminal domain GII88_08785 PF01327 Polypeptide deformylase GII88_08790 PF02911 Formyl transferase, C-terminal domain GII88_08790 PF00551 Formyl transferase GII88_08795 PF01189 16S rRNA methyltransferase RsmB/F GII88_08795 PF01029 NusB family GII88_08800 PF04055 Radical SAM superfamily GII88_08810 PF03793 PASTA domain GII88_08810 PF00069 Protein kinase domain GII88_08815 PF03193 RsgA GTPase GII88_08815 PF16745 RsgA N-terminal domain GII88_08820 PF00834 Ribulose-phosphate 3 epimerase family GII88_08825 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain GII88_08825 PF04263 Thiamin pyrophosphokinase, catalytic domain GII88_08830 PF08183 Stage V sporulation protein family GII88_08835 PF00830 Ribosomal L28 family GII88_08840 PF03780 Asp23 family, cell envelope-related function GII88_08845 PF13684 Dihydroxyacetone kinase family GII88_08845 PF02734 DAK2 domain GII88_08850 PF03315 Serine dehydratase beta chain GII88_08850 PF01842 ACT domain GII88_08855 PF03313 Serine dehydratase alpha chain GII88_08860 PF00271 Helicase conserved C-terminal domain GII88_08860 PF17191 RecG wedge domain GII88_08860 PF00270 DEAD/DEAH box helicase GII88_08865 PF08279 HTH domain GII88_08865 PF03061 Thioesterase superfamily GII88_08870 PF02504 Fatty acid synthesis protein GII88_08875 PF00698 Acyl transferase domain GII88_08885 PF00550 Phosphopantetheine attachment site GII88_08890 PF00035 Double-stranded RNA binding motif GII88_08890 PF14622 Ribonuclease-III-like GII88_08895 PF06470 SMC proteins Flexible Hinge Domain GII88_08895 PF02463 RecF/RecN/SMC N terminal domain GII88_08900 PF02881 SRP54-type protein, helical bundle domain GII88_08900 PF00448 SRP54-type protein, GTPase domain GII88_08905 PF04297 Putative helix-turn-helix protein, YlxM / p13 like GII88_08910 PF00448 SRP54-type protein, GTPase domain GII88_08910 PF02881 SRP54-type protein, helical bundle domain GII88_08910 PF02978 Signal peptide binding domain GII88_08915 PF00886 Ribosomal protein S16 GII88_08925 PF11068 YlqD protein GII88_08930 PF05239 PRC-barrel domain GII88_08930 PF01782 RimM N-terminal domain GII88_08935 PF01746 tRNA (Guanine-1)-methyltransferase GII88_08940 PF01245 Ribosomal protein L19 GII88_08945 PF01926 50S ribosome-binding GTPase GII88_08950 PF01351 Ribonuclease HII GII88_08960 PF01312 FlhB HrpN YscU SpaS Family GII88_08965 PF08442 ATP-grasp domain GII88_08965 PF00549 CoA-ligase GII88_08970 PF02629 CoA binding domain GII88_08970 PF00549 CoA-ligase GII88_08975 PF02481 DNA recombination-mediator protein A GII88_08980 PF01131 DNA topoisomerase GII88_08980 PF01751 Toprim domain GII88_08980 PF01396 Topoisomerase DNA binding C4 zinc finger GII88_08985 PF01134 Glucose inhibited division protein A GII88_08990 PF02899 Phage integrase, N-terminal SAM-like domain GII88_08990 PF00589 Phage integrase family GII88_08995 PF00227 Proteasome subunit GII88_09000 PF00004 ATPase family associated with various cellular activities (AAA) GII88_09000 PF07724 AAA domain (Cdc48 subfamily) GII88_09000 PF10431 C-terminal, D2-small domain, of ClpB protein GII88_09005 PF06018 CodY GAF-like domain GII88_09005 PF08222 CodY helix-turn-helix domain GII88_09010 PF00460 Flagella basal body rod protein GII88_09015 PF00460 Flagella basal body rod protein GII88_09015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GII88_09020 PF02049 Flagellar hook-basal body complex protein FliE GII88_09025 PF08345 Flagellar M-ring protein C-terminal GII88_09025 PF01514 Secretory protein of YscJ/FliF family GII88_09030 PF01706 FliG C-terminal domain GII88_09030 PF14841 FliG middle domain GII88_09030 PF14842 FliG N-terminal domain GII88_09035 PF02108 Flagellar assembly protein FliH GII88_09040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GII88_09040 PF02874 ATP synthase alpha/beta family, beta-barrel domain GII88_09040 PF18269 T3SS EscN ATPase C-terminal domain GII88_09045 PF02050 Flagellar FliJ protein GII88_09055 PF02120 Flagellar hook-length control protein FliK GII88_09060 PF03963 Flagellar hook capping protein - N-terminal region GII88_09065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GII88_09065 PF00460 Flagella basal body rod protein GII88_09070 PF06289 Flagellar and Swarming motility proteins GII88_09075 PF03748 Flagellar basal body-associated protein FliL GII88_09080 PF02154 Flagellar motor switch protein FliM GII88_09080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GII88_09085 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GII88_09085 PF04509 CheC-like family GII88_09090 PF00072 Response regulator receiver domain GII88_09095 PF04347 Flagellar biosynthesis protein, FliO GII88_09100 PF00813 FliP family GII88_09105 PF01313 Bacterial export proteins, family 3 GII88_09110 PF01311 Bacterial export proteins, family 1 GII88_09115 PF01312 FlhB HrpN YscU SpaS Family GII88_09120 PF00771 FHIPEP family GII88_09125 PF00448 SRP54-type protein, GTPase domain GII88_09130 PF10609 NUBPL iron-transfer P-loop NTPase GII88_09135 PF01339 CheB methylesterase GII88_09135 PF00072 Response regulator receiver domain GII88_09140 PF07194 P2 response regulator binding domain GII88_09140 PF02895 Signal transducing histidine kinase, homodimeric domain GII88_09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_09140 PF01627 Hpt domain GII88_09140 PF01584 CheW-like domain GII88_09145 PF01584 CheW-like domain GII88_09150 PF04509 CheC-like family GII88_09155 PF03975 CheD chemotactic sensory transduction GII88_09160 PF04542 Sigma-70 region 2 GII88_09160 PF04539 Sigma-70 region 3 GII88_09160 PF04545 Sigma-70, region 4 GII88_09170 PF00318 Ribosomal protein S2 GII88_09175 PF00889 Elongation factor TS GII88_09180 PF00696 Amino acid kinase family GII88_09185 PF01765 Ribosome recycling factor GII88_09190 PF01255 Putative undecaprenyl diphosphate synthase GII88_09200 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GII88_09200 PF13288 DXP reductoisomerase C-terminal domain GII88_09200 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GII88_09205 PF17820 PDZ domain GII88_09205 PF02163 Peptidase family M50 GII88_09210 PF03129 Anticodon binding domain GII88_09210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GII88_09210 PF04073 Aminoacyl-tRNA editing domain GII88_09215 PF14480 DNA polymerase III polC-type N-terminus I GII88_09215 PF07733 Bacterial DNA polymerase III alpha NTPase domain GII88_09215 PF14579 Helix-hairpin-helix motif GII88_09215 PF02811 PHP domain GII88_09215 PF11490 DNA polymerase III polC-type N-terminus II GII88_09215 PF00929 Exonuclease GII88_09215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GII88_09225 PF00759 Glycosyl hydrolase family 9 GII88_09225 PF00942 Cellulose binding domain GII88_09230 PF00942 Cellulose binding domain GII88_09230 PF02011 Glycosyl hydrolase family 48 GII88_09230 PF00759 Glycosyl hydrolase family 9 GII88_09235 PF00150 Cellulase (glycosyl hydrolase family 5) GII88_09235 PF18448 Carbohydrate binding domain GII88_09235 PF03442 Carbohydrate binding domain X2 GII88_09245 PF02576 RimP N-terminal domain GII88_09245 PF17384 RimP C-terminal SH3 domain GII88_09250 PF08529 NusA N-terminal domain GII88_09250 PF00575 S1 RNA binding domain GII88_09250 PF13184 NusA-like KH domain GII88_09255 PF04296 Protein of unknown function (DUF448) GII88_09260 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family GII88_09265 PF00009 Elongation factor Tu GTP binding domain GII88_09265 PF11987 Translation-initiation factor 2 GII88_09265 PF04760 Translation initiation factor IF-2, N-terminal region GII88_09270 PF04456 Protein of unknown function (DUF503) GII88_09275 PF02033 Ribosome-binding factor A GII88_09280 PF16198 tRNA pseudouridylate synthase B C-terminal domain GII88_09280 PF01509 TruB family pseudouridylate synthase (N terminal domain) GII88_09285 PF06574 FAD synthetase GII88_09285 PF01687 Riboflavin kinase GII88_09290 PF00312 Ribosomal protein S15 GII88_09295 PF01138 3' exoribonuclease family, domain 1 GII88_09295 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GII88_09295 PF00013 KH domain GII88_09295 PF00575 S1 RNA binding domain GII88_09295 PF03725 3' exoribonuclease family, domain 2 GII88_09300 PF01522 Polysaccharide deacetylase GII88_09305 PF05193 Peptidase M16 inactive domain GII88_09305 PF00675 Insulinase (Peptidase family M16) GII88_09310 PF05239 PRC-barrel domain GII88_09315 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GII88_09315 PF16924 Dipicolinate synthase subunit A N-terminal domain GII88_09320 PF02441 Flavoprotein GII88_09325 PF02774 Semialdehyde dehydrogenase, dimerisation domain GII88_09325 PF01118 Semialdehyde dehydrogenase, NAD binding domain GII88_09330 PF00696 Amino acid kinase family GII88_09330 PF13840 ACT domain GII88_09335 PF00701 Dihydrodipicolinate synthetase family GII88_09340 PF00753 Metallo-beta-lactamase superfamily GII88_09340 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GII88_09340 PF17770 Ribonuclease J C-terminal domain GII88_09345 PF00574 Clp protease GII88_09350 PF14035 YlzJ-like protein GII88_09355 PF01580 FtsK/SpoIIIE family GII88_09355 PF09397 Ftsk gamma domain GII88_09355 PF17854 FtsK alpha domain GII88_09360 PF00392 Bacterial regulatory proteins, gntR family GII88_09360 PF07702 UTRA domain GII88_09365 PF07690 Major Facilitator Superfamily GII88_09370 PF05193 Peptidase M16 inactive domain GII88_09375 PF00675 Insulinase (Peptidase family M16) GII88_09375 PF05193 Peptidase M16 inactive domain GII88_09385 PF11588 Protein of unknown function (DUF3243) GII88_09390 PF11868 Protein of unknown function (DUF3388) GII88_09395 PF13464 Domain of unknown function (DUF4115) GII88_09400 PF01066 CDP-alcohol phosphatidyltransferase GII88_09405 PF02464 Competence-damaged protein GII88_09405 PF00994 Probable molybdopterin binding domain GII88_09405 PF18146 Damage-inducible protein CinA KH domain GII88_09410 PF00154 recA bacterial DNA recombination protein GII88_09415 PF01966 HD domain GII88_09415 PF12072 Domain of unknown function (DUF3552) GII88_09415 PF00013 KH domain GII88_09420 PF13277 YmdB-like protein GII88_09425 PF04232 Stage V sporulation protein S (SpoVS) GII88_09430 PF01244 Membrane dipeptidase (Peptidase family M19) GII88_09435 PF08240 Alcohol dehydrogenase GroES-like domain GII88_09435 PF00107 Zinc-binding dehydrogenase GII88_09440 PF00155 Aminotransferase class I and II GII88_09445 PF04055 Radical SAM superfamily GII88_09445 PF00919 Uncharacterized protein family UPF0004 GII88_09445 PF01938 TRAM domain GII88_09450 PF06133 Control of competence regulator ComK, YlbF/YmcA GII88_09455 PF10628 Outer spore coat protein E (CotE) GII88_09460 PF05192 MutS domain III GII88_09460 PF01624 MutS domain I GII88_09460 PF05188 MutS domain II GII88_09460 PF00488 MutS domain V GII88_09460 PF05190 MutS family domain IV GII88_09465 PF01119 DNA mismatch repair protein, C-terminal domain GII88_09465 PF08676 MutL C terminal dimerisation domain GII88_09470 PF03992 Antibiotic biosynthesis monooxygenase GII88_09475 PF14449 Pre-toxin TG GII88_09475 PF04740 LXG domain of WXG superfamily GII88_09490 PF02492 CobW/HypB/UreG, nucleotide-binding domain GII88_09490 PF07683 Cobalamin synthesis protein cobW C-terminal domain GII88_09500 PF00583 Acetyltransferase (GNAT) family GII88_09515 PF01593 Flavin containing amine oxidoreductase GII88_09520 PF06912 Protein of unknown function (DUF1275) GII88_09525 PF02080 TrkA-C domain GII88_09525 PF00999 Sodium/hydrogen exchanger family GII88_09525 PF03471 Transporter associated domain GII88_09545 PF01906 Putative heavy-metal-binding GII88_09550 PF09335 SNARE associated Golgi protein GII88_09555 PF11954 Domain of unknown function (DUF3471) GII88_09555 PF00144 Beta-lactamase GII88_09560 PF04101 Glycosyltransferase family 28 C-terminal domain GII88_09565 PF13520 Amino acid permease GII88_09570 PF07875 Coat F domain GII88_09585 PF00440 Bacterial regulatory proteins, tetR family GII88_09590 PF12680 SnoaL-like domain GII88_09595 PF01370 NAD dependent epimerase/dehydratase family GII88_09605 PF02566 OsmC-like protein GII88_09610 PF00893 Small Multidrug Resistance protein GII88_09615 PF00893 Small Multidrug Resistance protein GII88_09625 PF12788 YmaF family GII88_09635 PF17209 Hfq protein GII88_09650 PF07972 NrdI Flavodoxin like GII88_09655 PF00317 Ribonucleotide reductase, all-alpha domain GII88_09655 PF02867 Ribonucleotide reductase, barrel domain GII88_09655 PF08343 Ribonucleotide reductase N-terminal GII88_09660 PF00268 Ribonucleotide reductase, small chain GII88_09670 PF00753 Metallo-beta-lactamase superfamily GII88_09675 PF01592 NifU-like N terminal domain GII88_09680 PF01475 Ferric uptake regulator family GII88_09685 PF07729 FCD domain GII88_09685 PF00392 Bacterial regulatory proteins, gntR family GII88_09690 PF13536 Putative multidrug resistance efflux transporter GII88_09695 PF01520 N-acetylmuramoyl-L-alanine amidase GII88_09695 PF05036 Sporulation related domain GII88_09725 PF00440 Bacterial regulatory proteins, tetR family GII88_09740 PF05378 Hydantoinase/oxoprolinase N-terminal region GII88_09740 PF01968 Hydantoinase/oxoprolinase GII88_09750 PF02538 Hydantoinase B/oxoprolinase GII88_09775 PF17866 AAA lid domain GII88_09775 PF00004 ATPase family associated with various cellular activities (AAA) GII88_09780 PF16360 GTP-binding GTPase Middle Region GII88_09780 PF01926 50S ribosome-binding GTPase GII88_09780 PF13167 GTP-binding GTPase N-terminal GII88_09785 PF06838 Methionine gamma-lyase GII88_09790 PF13411 MerR HTH family regulatory protein GII88_09795 PF00120 Glutamine synthetase, catalytic domain GII88_09795 PF03951 Glutamine synthetase, beta-Grasp domain GII88_09820 PF01230 HIT domain GII88_09855 PF16302 Domain of unknown function (DUF4944) GII88_09875 PF00440 Bacterial regulatory proteins, tetR family GII88_09875 PF17934 Tetracyclin repressor-like, C-terminal domain GII88_09880 PF00893 Small Multidrug Resistance protein GII88_09885 PF00893 Small Multidrug Resistance protein GII88_09890 PF13302 Acetyltransferase (GNAT) domain GII88_09910 PF05067 Manganese containing catalase GII88_09930 PF00440 Bacterial regulatory proteins, tetR family GII88_09930 PF08360 QacR-like protein, C-terminal region GII88_09935 PF01047 MarR family GII88_09940 PF00881 Nitroreductase family GII88_09945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_09950 PF01613 Flavin reductase like domain GII88_09955 PF03358 NADPH-dependent FMN reductase GII88_09970 PF00303 Thymidylate synthase GII88_09975 PF14040 Deoxyribonuclease NucA/NucB GII88_09980 PF00717 Peptidase S24-like GII88_09980 PF01726 LexA DNA binding domain GII88_09985 PF01476 LysM domain GII88_09990 PF00239 Resolvase, N terminal domain GII88_09995 PF05979 Bacterial protein of unknown function (DUF896) GII88_10000 PF00456 Transketolase, thiamine diphosphate binding domain GII88_10000 PF02780 Transketolase, C-terminal domain GII88_10000 PF02779 Transketolase, pyrimidine binding domain GII88_10005 PF10747 Sporulation inhibitor of replication protein SirA GII88_10010 PF03672 Uncharacterised protein family (UPF0154) GII88_10015 PF09388 Spo0E like sporulation regulatory protein GII88_10020 PF02683 Cytochrome C biogenesis protein transmembrane region GII88_10025 PF00072 Response regulator receiver domain GII88_10030 PF07301 Protein of unknown function (DUF1453) GII88_10035 PF11084 Protein of unknown function (DUF2621) GII88_10045 PF08179 Small acid-soluble spore protein P family GII88_10055 PF00330 Aconitase family (aconitate hydratase) GII88_10055 PF00694 Aconitase C-terminal domain GII88_10060 PF00578 AhpC/TSA family GII88_10065 PF13040 Fur-regulated basic protein B GII88_10070 PF08177 Small acid-soluble spore protein N family GII88_10080 PF03061 Thioesterase superfamily GII88_10105 PF01521 Iron-sulphur cluster biosynthesis GII88_10110 PF02660 Glycerol-3-phosphate acyltransferase GII88_10115 PF13380 CoA binding domain GII88_10120 PF00986 DNA gyrase B subunit, carboxyl terminus GII88_10120 PF00204 DNA gyrase B GII88_10120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_10120 PF01751 Toprim domain GII88_10125 PF03989 DNA gyrase C-terminal domain, beta-propeller GII88_10125 PF00521 DNA gyrase/topoisomerase IV, subunit A GII88_10130 PF00392 Bacterial regulatory proteins, gntR family GII88_10140 PF00596 Class II Aldolase and Adducin N-terminal domain GII88_10145 PF11762 L-arabinose isomerase C-terminal domain GII88_10145 PF02610 L-arabinose isomerase GII88_10150 PF00083 Sugar (and other) transporter GII88_10155 PF00106 short chain dehydrogenase GII88_10165 PF01235 Sodium:alanine symporter family GII88_10175 PF02665 Nitrate reductase gamma subunit GII88_10180 PF02613 Nitrate reductase delta subunit GII88_10185 PF14711 Respiratory nitrate reductase beta C-terminal GII88_10185 PF13247 4Fe-4S dicluster domain GII88_10190 PF00384 Molybdopterin oxidoreductase GII88_10190 PF01568 Molydopterin dinucleotide binding domain GII88_10190 PF14710 Respiratory nitrate reductase alpha N-terminal GII88_10205 PF06463 Molybdenum Cofactor Synthesis C GII88_10205 PF04055 Radical SAM superfamily GII88_10215 PF14256 YwiC-like protein GII88_10220 PF00027 Cyclic nucleotide-binding domain GII88_10220 PF00325 Bacterial regulatory proteins, crp family GII88_10225 PF07690 Major Facilitator Superfamily GII88_10235 PF00027 Cyclic nucleotide-binding domain GII88_10235 PF13545 Crp-like helix-turn-helix domain GII88_10240 PF00115 Cytochrome C and Quinol oxidase polypeptide I GII88_10245 PF01814 Hemerythrin HHE cation binding domain GII88_10245 PF04405 Domain of Unknown function (DUF542) GII88_10250 PF07098 Protein of unknown function (DUF1360) GII88_10260 PF17452 Uncharacterized YnfE-like GII88_10265 PF13302 Acetyltransferase (GNAT) domain GII88_10275 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_10290 PF13229 Right handed beta helix region GII88_10295 PF05525 Branched-chain amino acid transport protein GII88_10300 PF00107 Zinc-binding dehydrogenase GII88_10300 PF08240 Alcohol dehydrogenase GroES-like domain GII88_10305 PF13411 MerR HTH family regulatory protein GII88_10315 PF12706 Beta-lactamase superfamily domain GII88_10330 PF00378 Enoyl-CoA hydratase/isomerase GII88_10335 PF00171 Aldehyde dehydrogenase family GII88_10340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GII88_10340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GII88_10345 PF02770 Acyl-CoA dehydrogenase, middle domain GII88_10345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GII88_10345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GII88_10350 PF01238 Phosphomannose isomerase type I GII88_10355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_10355 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_10355 PF02378 Phosphotransferase system, EIIC GII88_10375 PF08279 HTH domain GII88_10375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_10375 PF00874 PRD domain GII88_10375 PF05043 Mga helix-turn-helix domain GII88_10385 PF00005 ABC transporter GII88_10390 PF00392 Bacterial regulatory proteins, gntR family GII88_10395 PF00106 short chain dehydrogenase GII88_10400 PF03786 D-mannonate dehydratase (UxuA) GII88_10405 PF01055 Glycosyl hydrolases family 31 GII88_10405 PF13802 Galactose mutarotase-like GII88_10405 PF16338 Domain of unknown function (DUF4968) GII88_10405 PF17137 Domain of unknown function (DUF5110) GII88_10410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component GII88_10415 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component GII88_10420 PF03480 Bacterial extracellular solute-binding protein, family 7 GII88_10425 PF00356 Bacterial regulatory proteins, lacI family GII88_10430 PF01451 Low molecular weight phosphotyrosine protein phosphatase GII88_10435 PF02040 Arsenical pump membrane protein GII88_10440 PF01022 Bacterial regulatory protein, arsR family GII88_10445 PF08818 Domain of unknown function (DU1801) GII88_10455 PF06800 Sugar transport protein GII88_10460 PF02638 Glycosyl hydrolase-like 10 GII88_10470 PF04055 Radical SAM superfamily GII88_10475 PF02901 Pyruvate formate lyase-like GII88_10475 PF01228 Glycine radical GII88_10480 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family GII88_10485 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_10490 PF07849 Protein of unknown function (DUF1641) GII88_10500 PF12728 Helix-turn-helix domain GII88_10510 PF16177 Acetyl-coenzyme A synthetase N-terminus GII88_10510 PF00501 AMP-binding enzyme GII88_10510 PF13193 AMP-binding enzyme C-terminal domain GII88_10515 PF01039 Carboxyl transferase domain GII88_10520 PF00378 Enoyl-CoA hydratase/isomerase GII88_10525 PF00682 HMGL-like GII88_10530 PF00364 Biotin-requiring enzyme GII88_10535 PF02785 Biotin carboxylase C-terminal domain GII88_10535 PF00289 Biotin carboxylase, N-terminal domain GII88_10535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GII88_10540 PF13193 AMP-binding enzyme C-terminal domain GII88_10540 PF00501 AMP-binding enzyme GII88_10545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GII88_10545 PF02770 Acyl-CoA dehydrogenase, middle domain GII88_10545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GII88_10550 PF02525 Flavodoxin-like fold GII88_10555 PF01638 HxlR-like helix-turn-helix GII88_10560 PF00171 Aldehyde dehydrogenase family GII88_10565 PF00696 Amino acid kinase family GII88_10565 PF01472 PUA domain GII88_10570 PF03807 NADP oxidoreductase coenzyme F420-dependent GII88_10570 PF14748 Pyrroline-5-carboxylate reductase dimerisation GII88_10575 PF04239 Protein of unknown function (DUF421) GII88_10585 PF01384 Phosphate transporter family GII88_10590 PF01507 Phosphoadenosine phosphosulfate reductase family GII88_10595 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) GII88_10600 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GII88_10605 PF13378 Enolase C-terminal domain-like GII88_10605 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GII88_10610 PF07690 Major Facilitator Superfamily GII88_10615 PF00535 Glycosyl transferase family 2 GII88_10630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GII88_10630 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_10635 PF04898 Glutamate synthase central domain GII88_10635 PF01493 GXGXG motif GII88_10635 PF00310 Glutamine amidotransferases class-II GII88_10635 PF01645 Conserved region in glutamate synthase GII88_10640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_10640 PF03466 LysR substrate binding domain GII88_10660 PF01047 MarR family GII88_10665 PF00664 ABC transporter transmembrane region GII88_10665 PF00005 ABC transporter GII88_10670 PF00005 ABC transporter GII88_10670 PF00664 ABC transporter transmembrane region GII88_10675 PF00067 Cytochrome P450 GII88_10680 PF00106 short chain dehydrogenase GII88_10685 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GII88_10685 PF00391 PEP-utilising enzyme, mobile domain GII88_10695 PF07690 Major Facilitator Superfamily GII88_10700 PF00384 Molybdopterin oxidoreductase GII88_10700 PF01568 Molydopterin dinucleotide binding domain GII88_10700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GII88_10705 PF01047 MarR family GII88_10715 PF03845 Spore germination protein GII88_10720 PF05504 Spore germination B3/ GerAC like, C-terminal GII88_10725 PF03845 Spore germination protein GII88_10730 PF03845 Spore germination protein GII88_10735 PF03323 Bacillus/Clostridium GerA spore germination protein GII88_10745 PF00672 HAMP domain GII88_10745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_10745 PF02743 Cache domain GII88_10750 PF01588 Putative tRNA binding domain GII88_10755 PF00082 Subtilase family GII88_10765 PF00440 Bacterial regulatory proteins, tetR family GII88_10765 PF17932 Tetracyclin repressor-like, C-terminal domain GII88_10770 PF01047 MarR family GII88_10775 PF01966 HD domain GII88_10785 PF14158 YndJ-like protein GII88_10790 PF13761 Domain of unknown function (DUF4166) GII88_10800 PF00440 Bacterial regulatory proteins, tetR family GII88_10800 PF13305 Tetracyclin repressor-like, C-terminal domain GII88_10805 PF00753 Metallo-beta-lactamase superfamily GII88_10810 PF06445 GyrI-like small molecule binding domain GII88_10820 PF13280 WYL domain GII88_10820 PF08279 HTH domain GII88_10830 PF01022 Bacterial regulatory protein, arsR family GII88_10845 PF00324 Amino acid permease GII88_10855 PF02719 Polysaccharide biosynthesis protein GII88_10870 PF00534 Glycosyl transferases group 1 GII88_10875 PF04238 Protein of unknown function (DUF420) GII88_10890 PF00474 Sodium:solute symporter family GII88_10895 PF06725 3D domain GII88_10895 PF01476 LysM domain GII88_10900 PF00570 HRDC domain GII88_10900 PF00271 Helicase conserved C-terminal domain GII88_10900 PF09382 RQC domain GII88_10900 PF00270 DEAD/DEAH box helicase GII88_10900 PF16124 RecQ zinc-binding GII88_10920 PF04237 YjbR GII88_10940 PF07849 Protein of unknown function (DUF1641) GII88_10960 PF12945 Flagellar protein YcgR GII88_10960 PF07238 PilZ domain GII88_10985 PF13217 Protein of unknown function (DUF4025) GII88_10990 PF05504 Spore germination B3/ GerAC like, C-terminal GII88_11005 PF01979 Amidohydrolase family GII88_11010 PF11122 Inner spore coat protein D GII88_11020 PF08386 TAP-like protein GII88_11020 PF00561 alpha/beta hydrolase fold GII88_11030 PF11122 Inner spore coat protein D GII88_11035 PF01810 LysE type translocator GII88_11040 PF00253 Ribosomal protein S14p/S29e GII88_11045 PF00293 NUDIX domain GII88_11045 PF13344 Haloacid dehalogenase-like hydrolase GII88_11050 PF00391 PEP-utilising enzyme, mobile domain GII88_11050 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GII88_11055 PF00440 Bacterial regulatory proteins, tetR family GII88_11065 PF10710 Protein of unknown function (DUF2512) GII88_11070 PF05163 DinB family GII88_11075 PF02525 Flavodoxin-like fold GII88_11080 PF01258 Prokaryotic dksA/traR C4-type zinc finger GII88_11085 PF08000 Bacterial PH domain GII88_11095 PF00171 Aldehyde dehydrogenase family GII88_11100 PF07690 Major Facilitator Superfamily GII88_11105 PF01636 Phosphotransferase enzyme family GII88_11115 PF13243 Squalene-hopene cyclase C-terminal domain GII88_11115 PF13249 Squalene-hopene cyclase N-terminal domain GII88_11120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GII88_11120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GII88_11135 PF00209 Sodium:neurotransmitter symporter family GII88_11140 PF01758 Sodium Bile acid symporter family GII88_11145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GII88_11145 PF00364 Biotin-requiring enzyme GII88_11145 PF02817 e3 binding domain GII88_11150 PF16870 2-oxoglutarate dehydrogenase C-terminal GII88_11150 PF00676 Dehydrogenase E1 component GII88_11150 PF02779 Transketolase, pyrimidine binding domain GII88_11155 PF00092 von Willebrand factor type A domain GII88_11160 PF07728 AAA domain (dynein-related subfamily) GII88_11165 PF13627 Prokaryotic lipoprotein-attachment site GII88_11165 PF00080 Copper/zinc superoxide dismutase (SODC) GII88_11170 PF00877 NlpC/P60 family GII88_11170 PF01476 LysM domain GII88_11180 PF01554 MatE GII88_11185 PF02585 GlcNAc-PI de-N-acetylase GII88_11190 PF08830 Protein of unknown function (DUF1806) GII88_11200 PF00892 EamA-like transporter family GII88_11210 PF03330 Lytic transglycolase GII88_11225 PF01638 HxlR-like helix-turn-helix GII88_11230 PF00881 Nitroreductase family GII88_11235 PF01738 Dienelactone hydrolase family GII88_11240 PF11755 Protein of unknown function (DUF3311) GII88_11245 PF00474 Sodium:solute symporter family GII88_11255 PF01471 Putative peptidoglycan binding domain GII88_11255 PF03572 Peptidase family S41 GII88_11255 PF17820 PDZ domain GII88_11260 PF08241 Methyltransferase domain GII88_11270 PF02557 D-alanyl-D-alanine carboxypeptidase GII88_11275 PF01048 Phosphorylase superfamily GII88_11280 PF03773 Predicted permease GII88_11295 PF14191 YodL-like GII88_11300 PF01569 PAP2 superfamily GII88_11305 PF14162 YozD-like protein GII88_11315 PF06855 YozE SAM-like fold GII88_11320 PF14122 YokU-like protein, putative antitoxin GII88_11330 PF11553 Protein of unknown function (DUF3231) GII88_11340 PF08719 Domain of unknown function (DUF1768) GII88_11365 PF00269 Small, acid-soluble spore proteins, alpha/beta type GII88_11380 PF00303 Thymidylate synthase GII88_11410 PF00692 dUTPase GII88_11430 PF00085 Thioredoxin GII88_11440 PF00268 Ribonucleotide reductase, small chain GII88_11445 PF00145 C-5 cytosine-specific DNA methylase GII88_11455 PF00317 Ribonucleotide reductase, all-alpha domain GII88_11455 PF02867 Ribonucleotide reductase, barrel domain GII88_11455 PF08343 Ribonucleotide reductase N-terminal GII88_11460 PF13392 HNH endonuclease GII88_11465 PF00317 Ribonucleotide reductase, all-alpha domain GII88_11465 PF02867 Ribonucleotide reductase, barrel domain GII88_11465 PF08343 Ribonucleotide reductase N-terminal GII88_11470 PF07972 NrdI Flavodoxin like GII88_11530 PF01555 DNA methylase GII88_11550 PF06725 3D domain GII88_11555 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GII88_11555 PF14579 Helix-hairpin-helix motif GII88_11555 PF07733 Bacterial DNA polymerase III alpha NTPase domain GII88_11555 PF02811 PHP domain GII88_11560 PF17768 RecJ OB domain GII88_11560 PF01368 DHH family GII88_11570 PF03796 DnaB-like helicase C terminal domain GII88_11615 PF00149 Calcineurin-like phosphoesterase GII88_11640 PF09643 YopX protein GII88_11655 PF01068 ATP dependent DNA ligase domain GII88_11700 PF06908 YspA SLOG family GII88_11715 PF14490 Helix-hairpin-helix containing domain GII88_11715 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain GII88_11715 PF13538 UvrD-like helicase C-terminal domain GII88_11740 PF14072 DNA-sulfur modification-associated GII88_11745 PF02899 Phage integrase, N-terminal SAM-like domain GII88_11745 PF00589 Phage integrase family GII88_11775 PF00082 Subtilase family GII88_11775 PF05922 Peptidase inhibitor I9 GII88_11850 PF13443 Cro/C1-type HTH DNA-binding domain GII88_11940 PF00216 Bacterial DNA-binding protein GII88_11955 PF09642 YonK protein GII88_11975 PF03237 Terminase-like family GII88_12070 PF13495 Phage integrase, N-terminal SAM-like domain GII88_12070 PF00589 Phage integrase family GII88_12125 PF01464 Transglycosylase SLT domain GII88_12125 PF01551 Peptidase family M23 GII88_12125 PF10145 Phage-related minor tail protein GII88_12130 PF01464 Transglycosylase SLT domain GII88_12130 PF10145 Phage-related minor tail protein GII88_12130 PF01551 Peptidase family M23 GII88_12135 PF01464 Transglycosylase SLT domain GII88_12135 PF10145 Phage-related minor tail protein GII88_12135 PF01551 Peptidase family M23 GII88_12140 PF05709 Phage tail protein GII88_12145 PF06605 Prophage endopeptidase tail GII88_12155 PF04650 YSIRK type signal peptide GII88_12155 PF12708 Pectate lyase superfamily protein GII88_12155 PF13229 Right handed beta helix region GII88_12160 PF01510 N-acetylmuramoyl-L-alanine amidase GII88_12185 PF18801 response regulator aspartate phosphatase H, N terminal GII88_12190 PF07690 Major Facilitator Superfamily GII88_12225 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH GII88_12225 PF04740 LXG domain of WXG superfamily GII88_12230 PF09346 SMI1 / KNR4 family (SUKH-1) GII88_12240 PF00239 Resolvase, N terminal domain GII88_12240 PF07508 Recombinase GII88_12245 PF12544 Lysine-2,3-aminomutase GII88_12250 PF00583 Acetyltransferase (GNAT) family GII88_12255 PF01546 Peptidase family M20/M25/M40 GII88_12255 PF07687 Peptidase dimerisation domain GII88_12260 PF01144 Coenzyme A transferase GII88_12265 PF01144 Coenzyme A transferase GII88_12270 PF00202 Aminotransferase class-III GII88_12285 PF00583 Acetyltransferase (GNAT) family GII88_12290 PF01641 SelR domain GII88_12295 PF01625 Peptide methionine sulfoxide reductase GII88_12300 PF01047 MarR family GII88_12310 PF00990 Diguanylate cyclase, GGDEF domain GII88_12310 PF07694 5TMR of 5TMR-LYT GII88_12315 PF01554 MatE GII88_12325 PF17431 Uncharacterized YmpT-like GII88_12330 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) GII88_12335 PF13472 GDSL-like Lipase/Acylhydrolase family GII88_12340 PF02630 SCO1/SenC GII88_12345 PF02645 Uncharacterised protein, DegV family COG1307 GII88_12350 PF10751 Protein of unknown function (DUF2535) GII88_12355 PF00585 C-terminal regulatory domain of Threonine dehydratase GII88_12355 PF00291 Pyridoxal-phosphate dependent enzyme GII88_12360 PF08461 Ribonuclease R winged-helix domain GII88_12360 PF00158 Sigma-54 interaction domain GII88_12365 PF03006 Haemolysin-III related GII88_12375 PF00186 Dihydrofolate reductase GII88_12380 PF04608 Phosphatidylglycerophosphatase A GII88_12385 PF14005 YpjP-like protein GII88_12390 PF04445 Putative SAM-dependent methyltransferase GII88_12395 PF06491 Disulphide isomerase GII88_12400 PF00920 Dehydratase family GII88_12405 PF13769 Virulence factor GII88_12405 PF08712 Scaffold protein Nfu/NifU N terminal GII88_12410 PF01966 HD domain GII88_12415 PF00255 Glutathione peroxidase GII88_12420 PF01268 Formate--tetrahydrofolate ligase GII88_12425 PF04204 Homoserine O-succinyltransferase GII88_12430 PF00534 Glycosyl transferases group 1 GII88_12430 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase GII88_12440 PF00313 'Cold-shock' DNA-binding domain GII88_12450 PF10819 Protein of unknown function (DUF2564) GII88_12455 PF10782 Zinc-finger GII88_12460 PF13456 Reverse transcriptase-like GII88_12465 PF02592 Putative vitamin uptake transporter GII88_12470 PF13456 Reverse transcriptase-like GII88_12480 PF01367 5'-3' exonuclease, C-terminal SAM fold GII88_12480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GII88_12485 PF10752 Protein of unknown function (DUF2533) GII88_12490 PF00350 Dynamin family GII88_12500 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family GII88_12505 PF02797 Chalcone and stilbene synthases, C-terminal domain GII88_12505 PF00195 Chalcone and stilbene synthases, N-terminal domain GII88_12510 PF00583 Acetyltransferase (GNAT) family GII88_12515 PF00860 Permease family GII88_12520 PF00156 Phosphoribosyl transferase domain GII88_12525 PF02074 Carboxypeptidase Taq (M32) metallopeptidase GII88_12530 PF13307 Helicase C-terminal domain GII88_12540 PF02926 THUMP domain GII88_12540 PF01170 Putative RNA methylase family UPF0020 GII88_12550 PF05103 DivIVA protein GII88_12555 PF06908 YspA SLOG family GII88_12560 PF11122 Inner spore coat protein D GII88_12565 PF13482 RNase_H superfamily GII88_12570 PF00270 DEAD/DEAH box helicase GII88_12570 PF09369 Domain of unknown function (DUF1998) GII88_12570 PF00271 Helicase conserved C-terminal domain GII88_12575 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GII88_12585 PF14179 YppG-like protein GII88_12590 PF14178 YppF-like protein GII88_12600 PF08807 Bacterial domain of unknown function (DUF1798) GII88_12615 PF10720 Protein of unknown function (DUF2515) GII88_12620 PF03838 Recombination protein U GII88_12625 PF00905 Penicillin binding protein transpeptidase domain GII88_12625 PF00912 Transglycosylase GII88_12635 PF00730 HhH-GPD superfamily base excision DNA repair protein GII88_12635 PF00633 Helix-hairpin-helix motif GII88_12635 PF10576 Iron-sulfur binding domain of endonuclease III GII88_12640 PF07261 Replication initiation and membrane attachment GII88_12645 PF01336 OB-fold nucleic acid binding domain GII88_12645 PF00152 tRNA synthetases class II (D, K and N) GII88_12650 PF00155 Aminotransferase class I and II GII88_12655 PF17881 Domain of unknown function (DUF5590) GII88_12655 PF03413 Peptidase propeptide and YPEB domain GII88_12660 PF14084 Protein of unknown function (DUF4264) GII88_12665 PF13307 Helicase C-terminal domain GII88_12665 PF04851 Type III restriction enzyme, res subunit GII88_12665 PF00929 Exonuclease GII88_12670 PF02261 Aspartate decarboxylase GII88_12675 PF02569 Pantoate-beta-alanine ligase GII88_12680 PF02548 Ketopantoate hydroxymethyltransferase GII88_12690 PF02237 Biotin protein ligase C terminal domain GII88_12690 PF03099 Biotin/lipoate A/B protein ligase family GII88_12690 PF08279 HTH domain GII88_12695 PF12627 Probable RNA and SrmB- binding site of polymerase A GII88_12695 PF13735 tRNA nucleotidyltransferase domain 2 putative GII88_12695 PF01743 Poly A polymerase head domain GII88_12700 PF00534 Glycosyl transferases group 1 GII88_12700 PF13439 Glycosyltransferase Family 4 GII88_12705 PF02585 GlcNAc-PI de-N-acetylase GII88_12710 PF02142 MGS-like domain GII88_12715 PF01113 Dihydrodipicolinate reductase, N-terminus GII88_12715 PF05173 Dihydrodipicolinate reductase, C-terminus GII88_12720 PF03819 MazG nucleotide pyrophosphohydrolase domain GII88_12725 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GII88_12725 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GII88_12730 PF09577 Sporulation protein YpjB (SpoYpjB) GII88_12735 PF07187 Protein of unknown function (DUF1405) GII88_12740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GII88_12740 PF00032 Cytochrome b(C-terminal)/b6/petD GII88_12745 PF00033 Cytochrome b/b6/petB GII88_12750 PF00355 Rieske [2Fe-2S] domain GII88_12755 PF10673 Protein of unknown function (DUF2487) GII88_12760 PF08864 UPF0302 domain GII88_12760 PF08858 IDEAL domain GII88_12770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GII88_12775 PF01842 ACT domain GII88_12775 PF02153 Prephenate dehydrogenase GII88_12780 PF00155 Aminotransferase class I and II GII88_12785 PF00290 Tryptophan synthase alpha chain GII88_12790 PF00291 Pyridoxal-phosphate dependent enzyme GII88_12795 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GII88_12800 PF00218 Indole-3-glycerol phosphate synthase GII88_12805 PF02885 Glycosyl transferase family, helical bundle domain GII88_12805 PF00591 Glycosyl transferase family, a/b domain GII88_12810 PF04715 Anthranilate synthase component I, N terminal region GII88_12810 PF00425 chorismate binding enzyme GII88_12815 PF07736 Chorismate mutase type I GII88_12820 PF01761 3-dehydroquinate synthase GII88_12825 PF01264 Chorismate synthase GII88_12830 PF01739 CheR methyltransferase, SAM binding domain GII88_12830 PF03705 CheR methyltransferase, all-alpha domain GII88_12835 PF00334 Nucleoside diphosphate kinase GII88_12840 PF00348 Polyprenyl synthetase GII88_12845 PF01209 ubiE/COQ5 methyltransferase family GII88_12850 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 GII88_12855 PF02081 Tryptophan RNA-binding attenuator protein GII88_12860 PF01227 GTP cyclohydrolase I GII88_12865 PF00216 Bacterial DNA-binding protein GII88_12870 PF09547 Stage IV sporulation protein A (spore_IV_A) GII88_12880 PF10966 Protein of unknown function (DUF2768) GII88_12890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GII88_12890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GII88_12895 PF01926 50S ribosome-binding GTPase GII88_12895 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GII88_12905 PF14045 YIEGIA protein GII88_12915 PF14140 YpzI-like protein GII88_12920 PF01070 FMN-dependent dehydrogenase GII88_12925 PF00575 S1 RNA binding domain GII88_12930 PF02224 Cytidylate kinase GII88_12935 PF03413 Peptidase propeptide and YPEB domain GII88_12935 PF14620 YpeB sporulation GII88_12940 PF01471 Putative peptidoglycan binding domain GII88_12940 PF07486 Cell Wall Hydrolase GII88_12945 PF13367 PrsW family intramembrane metalloprotease GII88_12950 PF00710 Asparaginase, N-terminal GII88_12950 PF17763 Glutaminase/Asparaginase C-terminal domain GII88_12960 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GII88_12960 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GII88_12965 PF05389 Negative regulator of genetic competence (MecA) GII88_12970 PF00149 Calcineurin-like phosphoesterase GII88_12975 PF10864 Protein of unknown function (DUF2663) GII88_12980 PF01476 LysM domain GII88_12985 PF02517 CPBP intramembrane metalloprotease GII88_12990 PF00270 DEAD/DEAH box helicase GII88_12990 PF00271 Helicase conserved C-terminal domain GII88_12995 PF14493 Helix-turn-helix domain GII88_13005 PF12822 ECF transporter, substrate-specific component GII88_13010 PF01842 ACT domain GII88_13010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GII88_13010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GII88_13015 PF01551 Peptidase family M23 GII88_13015 PF04225 Opacity-associated protein A LysM-like domain GII88_13025 PF04542 Sigma-70 region 2 GII88_13025 PF08281 Sigma-70, region 4 GII88_13030 PF03816 Cell envelope-related transcriptional attenuator domain GII88_13035 PF01522 Polysaccharide deacetylase GII88_13045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_13045 PF00512 His Kinase A (phospho-acceptor) domain GII88_13050 PF00072 Response regulator receiver domain GII88_13050 PF00486 Transcriptional regulatory protein, C terminal GII88_13055 PF18698 Histidine kinase sensor domain GII88_13055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_13055 PF00672 HAMP domain GII88_13055 PF00989 PAS fold GII88_13055 PF00512 His Kinase A (phospho-acceptor) domain GII88_13060 PF00072 Response regulator receiver domain GII88_13060 PF00486 Transcriptional regulatory protein, C terminal GII88_13065 PF01578 Cytochrome C assembly protein GII88_13070 PF05140 ResB-like family GII88_13075 PF00578 AhpC/TSA family GII88_13080 PF00849 RNA pseudouridylate synthase GII88_13080 PF01479 S4 domain GII88_13085 PF07670 Nucleoside recognition GII88_13090 PF07670 Nucleoside recognition GII88_13095 PF07943 Penicillin-binding protein 5, C-terminal domain GII88_13095 PF00768 D-alanyl-D-alanine carboxypeptidase GII88_13100 PF13047 Protein of unknown function (DUF3907) GII88_13105 PF04079 Segregation and condensation complex subunit ScpB GII88_13110 PF02616 Segregation and condensation protein ScpA GII88_13120 PF03745 Domain of unknown function (DUF309) GII88_13125 PF00583 Acetyltransferase (GNAT) family GII88_13130 PF00885 6,7-dimethyl-8-ribityllumazine synthase GII88_13135 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GII88_13135 PF00925 GTP cyclohydrolase II GII88_13140 PF00677 Lumazine binding domain GII88_13145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GII88_13145 PF01872 RibD C-terminal domain GII88_13155 PF00149 Calcineurin-like phosphoesterase GII88_13160 PF00011 Hsp20/alpha crystallin family GII88_13170 PF18801 response regulator aspartate phosphatase H, N terminal GII88_13175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GII88_13180 PF06207 Protein of unknown function (DUF1002) GII88_13185 PF05908 Poly-gamma-glutamate hydrolase GII88_13190 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GII88_13190 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GII88_13200 PF03323 Bacillus/Clostridium GerA spore germination protein GII88_13205 PF14097 Stage V sporulation protein AE1 GII88_13210 PF03862 SpoVAC/SpoVAEB sporulation membrane protein GII88_13215 PF07451 Stage V sporulation protein AD (SpoVAD) GII88_13220 PF03862 SpoVAC/SpoVAEB sporulation membrane protein GII88_13225 PF13782 Stage V sporulation protein AB GII88_13230 PF12164 Stage V sporulation protein AA GII88_13235 PF04545 Sigma-70, region 4 GII88_13235 PF04542 Sigma-70 region 2 GII88_13235 PF04539 Sigma-70 region 3 GII88_13240 PF13581 Histidine kinase-like ATPase domain GII88_13245 PF01740 STAS domain GII88_13250 PF07943 Penicillin-binding protein 5, C-terminal domain GII88_13250 PF00768 D-alanyl-D-alanine carboxypeptidase GII88_13255 PF01048 Phosphorylase superfamily GII88_13260 PF01676 Metalloenzyme superfamily GII88_13265 PF02899 Phage integrase, N-terminal SAM-like domain GII88_13265 PF00589 Phage integrase family GII88_13270 PF14004 Protein of unknown function (DUF4227) GII88_13275 PF01475 Ferric uptake regulator family GII88_13280 PF01944 Stage II sporulation protein M GII88_13285 PF02378 Phosphotransferase system, EIIC GII88_13290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_13305 PF13673 Acetyltransferase (GNAT) domain GII88_13315 PF00293 NUDIX domain GII88_13320 PF13072 Mother cell inhibitor of FtsZ GII88_13325 PF00440 Bacterial regulatory proteins, tetR family GII88_13330 PF13564 DoxX-like family GII88_13335 PF00248 Aldo/keto reductase family GII88_13345 PF12146 Serine aminopeptidase, S33 GII88_13350 PF10827 Protein of unknown function (DUF2552) GII88_13355 PF01521 Iron-sulphur cluster biosynthesis GII88_13370 PF03992 Antibiotic biosynthesis monooxygenase GII88_13375 PF01674 Lipase (class 2) GII88_13385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GII88_13390 PF00528 Binding-protein-dependent transport system inner membrane component GII88_13395 PF00528 Binding-protein-dependent transport system inner membrane component GII88_13400 PF00005 ABC transporter GII88_13405 PF00005 ABC transporter GII88_13405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_13410 PF01554 MatE GII88_13420 PF08863 YolD-like protein GII88_13425 PF11798 IMS family HHH motif GII88_13425 PF11799 impB/mucB/samB family C-terminal domain GII88_13425 PF00817 impB/mucB/samB family GII88_13430 PF14164 YqzH-like protein GII88_13435 PF07690 Major Facilitator Superfamily GII88_13445 PF00485 Phosphoribulokinase / Uridine kinase family GII88_13460 PF00005 ABC transporter GII88_13480 PF05908 Poly-gamma-glutamate hydrolase GII88_13490 PF00106 short chain dehydrogenase GII88_13495 PF00753 Metallo-beta-lactamase superfamily GII88_13500 PF14748 Pyrroline-5-carboxylate reductase dimerisation GII88_13500 PF03807 NADP oxidoreductase coenzyme F420-dependent GII88_13505 PF01546 Peptidase family M20/M25/M40 GII88_13510 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GII88_13515 PF12146 Serine aminopeptidase, S33 GII88_13520 PF00471 Ribosomal protein L33 GII88_13525 PF12706 Beta-lactamase superfamily domain GII88_13525 PF00753 Metallo-beta-lactamase superfamily GII88_13530 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain GII88_13530 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain GII88_13545 PF16868 NMT1-like family GII88_13550 PF07702 UTRA domain GII88_13550 PF00392 Bacterial regulatory proteins, gntR family GII88_13555 PF00232 Glycosyl hydrolase family 1 GII88_13560 PF02378 Phosphotransferase system, EIIC GII88_13565 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GII88_13570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_13575 PF00245 Alkaline phosphatase GII88_13585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GII88_13585 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain GII88_13590 PF11798 IMS family HHH motif GII88_13590 PF11799 impB/mucB/samB family C-terminal domain GII88_13590 PF00817 impB/mucB/samB family GII88_13600 PF02096 60Kd inner membrane protein GII88_13605 PF01546 Peptidase family M20/M25/M40 GII88_13605 PF07687 Peptidase dimerisation domain GII88_13610 PF01039 Carboxyl transferase domain GII88_13620 PF06081 Aromatic acid exporter family member 1 GII88_13620 PF11728 Putative aromatic acid exporter C-terminal domain GII88_13625 PF00005 ABC transporter GII88_13630 PF00528 Binding-protein-dependent transport system inner membrane component GII88_13635 PF00497 Bacterial extracellular solute-binding proteins, family 3 GII88_13640 PF06491 Disulphide isomerase GII88_13645 PF00781 Diacylglycerol kinase catalytic domain GII88_13650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GII88_13650 PF00364 Biotin-requiring enzyme GII88_13650 PF02817 e3 binding domain GII88_13655 PF02779 Transketolase, pyrimidine binding domain GII88_13655 PF02780 Transketolase, C-terminal domain GII88_13660 PF00676 Dehydrogenase E1 component GII88_13665 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_13665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GII88_13670 PF00871 Acetokinase family GII88_13675 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GII88_13675 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GII88_13680 PF01515 Phosphate acetyl/butaryl transferase GII88_13685 PF02954 Bacterial regulatory protein, Fis family GII88_13685 PF00989 PAS fold GII88_13685 PF00158 Sigma-54 interaction domain GII88_13690 PF11118 Protein of unknown function (DUF2627) GII88_13695 PF03009 Glycerophosphoryl diester phosphodiesterase family GII88_13700 PF01520 N-acetylmuramoyl-L-alanine amidase GII88_13715 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_13715 PF06426 Serine acetyltransferase, N-terminal GII88_13725 PF00072 Response regulator receiver domain GII88_13725 PF08769 Sporulation initiation factor Spo0A C terminal GII88_13730 PF05580 SpoIVB peptidase S55 GII88_13730 PF17820 PDZ domain GII88_13735 PF13476 AAA domain GII88_13740 PF01316 Arginine repressor, DNA binding domain GII88_13740 PF02863 Arginine repressor, C-terminal domain GII88_13745 PF01479 S4 domain GII88_13745 PF01728 FtsJ-like methyltransferase GII88_13750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GII88_13750 PF02779 Transketolase, pyrimidine binding domain GII88_13750 PF02780 Transketolase, C-terminal domain GII88_13755 PF00348 Polyprenyl synthetase GII88_13760 PF02609 Exonuclease VII small subunit GII88_13765 PF02601 Exonuclease VII, large subunit GII88_13765 PF13742 OB-fold nucleic acid binding domain GII88_13770 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GII88_13770 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GII88_13775 PF01029 NusB family GII88_13780 PF03780 Asp23 family, cell envelope-related function GII88_13785 PF00289 Biotin carboxylase, N-terminal domain GII88_13785 PF02785 Biotin carboxylase C-terminal domain GII88_13785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GII88_13790 PF00364 Biotin-requiring enzyme GII88_13795 PF12685 SpoIIIAH-like protein GII88_13805 PF09581 Stage III sporulation protein AF (Spore_III_AF) GII88_13810 PF09546 Stage III sporulation protein AE (spore_III_AE) GII88_13815 PF06686 Stage III sporulation protein AC/AD protein family GII88_13820 PF06686 Stage III sporulation protein AC/AD protein family GII88_13825 PF09548 Stage III sporulation protein AB (spore_III_AB) GII88_13835 PF10942 Protein of unknown function (DUF2619) GII88_13840 PF09285 Elongation factor P, C-terminal GII88_13840 PF08207 Elongation factor P (EF-P) KOW-like domain GII88_13840 PF01132 Elongation factor P (EF-P) OB domain GII88_13845 PF01321 Creatinase/Prolidase N-terminal domain GII88_13845 PF00557 Metallopeptidase family M24 GII88_13850 PF01220 Dehydroquinase class II GII88_13855 PF11085 Conserved membrane protein YqhR GII88_13860 PF07136 Protein of unknown function (DUF1385) GII88_13870 PF01734 Patatin-like phospholipase GII88_13875 PF01325 Iron dependent repressor, N-terminal DNA binding domain GII88_13875 PF02742 Iron dependent repressor, metal binding and dimerisation domain GII88_13880 PF03099 Biotin/lipoate A/B protein ligase family GII88_13885 PF00581 Rhodanese-like domain GII88_13890 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GII88_13895 PF00528 Binding-protein-dependent transport system inner membrane component GII88_13900 PF00005 ABC transporter GII88_13900 PF00571 CBS domain GII88_13905 PF02347 Glycine cleavage system P-protein GII88_13910 PF02347 Glycine cleavage system P-protein GII88_13915 PF08669 Glycine cleavage T-protein C-terminal barrel domain GII88_13915 PF01571 Aminomethyltransferase folate-binding domain GII88_13920 PF00176 SNF2 family N-terminal domain GII88_13920 PF00271 Helicase conserved C-terminal domain GII88_13925 PF11079 Bacterial protein YqhG of unknown function GII88_13930 PF08671 Anti-repressor SinI GII88_13935 PF08671 Anti-repressor SinI GII88_13935 PF01381 Helix-turn-helix GII88_13940 PF12389 Camelysin metallo-endopeptidase GII88_13955 PF13028 Protein of unknown function (DUF3889) GII88_13960 PF14038 YqzE-like protein GII88_13970 PF15980 Putative Competence protein ComGF GII88_13980 PF07963 Prokaryotic N-terminal methylation motif GII88_13985 PF07963 Prokaryotic N-terminal methylation motif GII88_13990 PF00482 Type II secretion system (T2SS), protein F GII88_13995 PF00437 Type II/IV secretion system protein GII88_14000 PF01740 STAS domain GII88_14000 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain GII88_14010 PF03960 ArsC family GII88_14015 PF11117 Protein of unknown function (DUF2626) GII88_14020 PF00753 Metallo-beta-lactamase superfamily GII88_14025 PF10958 Protein of unknown function (DUF2759) GII88_14030 PF01910 Thiamine-binding protein GII88_14040 PF00246 Zinc carboxypeptidase GII88_14045 PF01497 Periplasmic binding protein GII88_14050 PF00884 Sulfatase GII88_14055 PF00480 ROK family GII88_14060 PF06014 Bacterial protein of unknown function (DUF910) GII88_14065 PF03323 Bacillus/Clostridium GerA spore germination protein GII88_14070 PF01694 Rhomboid family GII88_14075 PF01812 5-formyltetrahydrofolate cyclo-ligase family GII88_14080 PF00471 Ribosomal protein L33 GII88_14085 PF13439 Glycosyltransferase Family 4 GII88_14085 PF00534 Glycosyl transferases group 1 GII88_14105 PF00005 ABC transporter GII88_14110 PF00005 ABC transporter GII88_14115 PF00528 Binding-protein-dependent transport system inner membrane component GII88_14120 PF00528 Binding-protein-dependent transport system inner membrane component GII88_14125 PF12849 PBP superfamily domain GII88_14135 PF07690 Major Facilitator Superfamily GII88_14140 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GII88_14140 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GII88_14145 PF04306 Protein of unknown function (DUF456) GII88_14150 PF06691 Protein of unknown function (DUF1189) GII88_14160 PF04551 GcpE protein GII88_14175 PF01475 Ferric uptake regulator family GII88_14180 PF00950 ABC 3 transport family GII88_14185 PF00005 ABC transporter GII88_14190 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GII88_14190 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GII88_14195 PF11116 Protein of unknown function (DUF2624) GII88_14200 PF01261 Xylose isomerase-like TIM barrel GII88_14205 PF00270 DEAD/DEAH box helicase GII88_14205 PF00271 Helicase conserved C-terminal domain GII88_14215 PF02401 LytB protein GII88_14220 PF01784 NIF3 (NGG1p interacting factor 3) GII88_14225 PF04816 tRNA (adenine(22)-N(1))-methyltransferase GII88_14230 PF04493 Endonuclease V GII88_14235 PF04493 Endonuclease V GII88_14275 PF14431 YwqJ-like deaminase GII88_14275 PF14449 Pre-toxin TG GII88_14275 PF04740 LXG domain of WXG superfamily GII88_14290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GII88_14295 PF04539 Sigma-70 region 3 GII88_14295 PF04545 Sigma-70, region 4 GII88_14295 PF03979 Sigma-70 factor, region 1.1 GII88_14295 PF04542 Sigma-70 region 2 GII88_14295 PF00140 Sigma-70 factor, region 1.2 GII88_14300 PF10410 DnaB-helicase binding domain of primase GII88_14300 PF08275 DNA primase catalytic core, N-terminal domain GII88_14300 PF01807 CHC2 zinc finger GII88_14305 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 GII88_14310 PF03618 Kinase/pyrophosphorylase GII88_14315 PF08279 HTH domain GII88_14315 PF00571 CBS domain GII88_14320 PF02092 Glycyl-tRNA synthetase beta subunit GII88_14325 PF02091 Glycyl-tRNA synthetase alpha subunit GII88_14330 PF02565 Recombination protein O C terminal GII88_14330 PF11967 Recombination protein O N terminal GII88_14335 PF14006 YqzL-like protein GII88_14340 PF07650 KH domain GII88_14340 PF01926 50S ribosome-binding GTPase GII88_14345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GII88_14350 PF01219 Prokaryotic diacylglycerol kinase GII88_14355 PF02130 Uncharacterized protein family UPF0054 GII88_14360 PF07698 7TM receptor with intracellular HD hydrolase GII88_14360 PF07697 7TM-HD extracellular GII88_14360 PF01966 HD domain GII88_14365 PF02562 PhoH-like protein GII88_14370 PF06898 Putative stage IV sporulation protein YqfD GII88_14375 PF07873 YabP family GII88_14385 PF12127 SigmaW regulon antibacterial GII88_14390 PF01957 NfeD-like C-terminal, partner-binding GII88_14390 PF01972 Serine dehydrogenase proteinase GII88_14395 PF09424 Yqey-like protein GII88_14400 PF01165 Ribosomal protein S21 GII88_14405 PF02690 Na+/Pi-cotransporter GII88_14410 PF01791 DeoC/LacD family aldolase GII88_14415 PF01938 TRAM domain GII88_14415 PF04055 Radical SAM superfamily GII88_14415 PF00919 Uncharacterized protein family UPF0004 GII88_14420 PF04452 RNA methyltransferase GII88_14430 PF00684 DnaJ central domain GII88_14430 PF00226 DnaJ domain GII88_14430 PF01556 DnaJ C terminal domain GII88_14435 PF00012 Hsp70 protein GII88_14440 PF01025 GrpE GII88_14445 PF01628 HrcA protein C terminal domain GII88_14450 PF06969 HemN C-terminal domain GII88_14450 PF04055 Radical SAM superfamily GII88_14455 PF03144 Elongation factor Tu domain 2 GII88_14455 PF06421 GTP-binding protein LepA C-terminus GII88_14455 PF00679 Elongation factor G C-terminus GII88_14455 PF00009 Elongation factor Tu GTP binding domain GII88_14460 PF12438 Protein of unknown function (DUF3679) GII88_14465 PF07454 Stage II sporulation protein P (SpoIIP) GII88_14470 PF03418 Germination protease GII88_14475 PF01649 Ribosomal protein S20 GII88_14480 PF06144 DNA polymerase III, delta subunit GII88_14485 PF14141 YqzM-like protein GII88_14490 PF13567 Domain of unknown function (DUF4131) GII88_14490 PF03772 Competence protein GII88_14490 PF00753 Metallo-beta-lactamase superfamily GII88_14495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GII88_14500 PF10531 SLBB domain GII88_14505 PF03807 NADP oxidoreductase coenzyme F420-dependent GII88_14505 PF14748 Pyrroline-5-carboxylate reductase dimerisation GII88_14510 PF13649 Methyltransferase domain GII88_14520 PF01966 HD domain GII88_14525 PF01467 Cytidylyltransferase-like GII88_14530 PF01985 CRS1 / YhbY (CRM) domain GII88_14535 PF01488 Shikimate / quinate 5-dehydrogenase GII88_14535 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GII88_14535 PF08501 Shikimate dehydrogenase substrate binding domain GII88_14540 PF01926 50S ribosome-binding GTPase GII88_14550 PF08970 Sporulation inhibitor A GII88_14555 PF00657 GDSL-like Lipase/Acylhydrolase GII88_14560 PF12746 GNAT acetyltransferase GII88_14565 PF10057 Uncharacterized conserved protein (DUF2294) GII88_14570 PF00384 Molybdopterin oxidoreductase GII88_14570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GII88_14570 PF00037 4Fe-4S binding domain GII88_14570 PF01568 Molydopterin dinucleotide binding domain GII88_14570 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GII88_14575 PF07849 Protein of unknown function (DUF1641) GII88_14585 PF04542 Sigma-70 region 2 GII88_14585 PF04545 Sigma-70, region 4 GII88_14605 PF07454 Stage II sporulation protein P (SpoIIP) GII88_14620 PF04545 Sigma-70, region 4 GII88_14620 PF04542 Sigma-70 region 2 GII88_14650 PF00005 ABC transporter GII88_14655 PF02687 FtsX-like permease family GII88_14660 PF00672 HAMP domain GII88_14660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_14660 PF00512 His Kinase A (phospho-acceptor) domain GII88_14665 PF00486 Transcriptional regulatory protein, C terminal GII88_14665 PF00072 Response regulator receiver domain GII88_14675 PF11122 Inner spore coat protein D GII88_14700 PF17094 Uncharacterised protein family (UPF0715) GII88_14730 PF00753 Metallo-beta-lactamase superfamily GII88_14730 PF16123 Hydroxyacylglutathione hydrolase C-terminus GII88_14740 PF00196 Bacterial regulatory proteins, luxR family GII88_14740 PF00072 Response regulator receiver domain GII88_14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_14745 PF07730 Histidine kinase GII88_14750 PF00085 Thioredoxin GII88_14755 PF01925 Sulfite exporter TauE/SafE GII88_14760 PF01206 Sulfurtransferase TusA GII88_14765 PF00753 Metallo-beta-lactamase superfamily GII88_14765 PF00581 Rhodanese-like domain GII88_14770 PF00581 Rhodanese-like domain GII88_14770 PF01206 Sulfurtransferase TusA GII88_14775 PF13686 DsrE/DsrF/DrsH-like family GII88_14780 PF02583 Metal-sensitive transcriptional repressor GII88_14825 PF01809 Putative membrane protein insertion efficiency factor GII88_14830 PF00490 Delta-aminolevulinic acid dehydratase GII88_14835 PF01380 SIS domain GII88_14840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GII88_14845 PF01638 HxlR-like helix-turn-helix GII88_14850 PF00487 Fatty acid desaturase GII88_14855 PF07730 Histidine kinase GII88_14860 PF00196 Bacterial regulatory proteins, luxR family GII88_14860 PF00072 Response regulator receiver domain GII88_14865 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_14870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GII88_14875 PF00528 Binding-protein-dependent transport system inner membrane component GII88_14885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_14885 PF00005 ABC transporter GII88_14890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GII88_14890 PF00005 ABC transporter GII88_14905 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GII88_14905 PF12833 Helix-turn-helix domain GII88_14910 PF00106 short chain dehydrogenase GII88_14925 PF00067 Cytochrome P450 GII88_14930 PF01925 Sulfite exporter TauE/SafE GII88_14945 PF00106 short chain dehydrogenase GII88_14950 PF08244 Glycosyl hydrolases family 32 C terminal GII88_14950 PF00251 Glycosyl hydrolases family 32 N-terminal domain GII88_14955 PF03613 PTS system mannose/fructose/sorbose family IID component GII88_14960 PF03609 PTS system sorbose-specific iic component GII88_14965 PF03830 PTS system sorbose subfamily IIB component GII88_14970 PF03610 PTS system fructose IIA component GII88_14975 PF00158 Sigma-54 interaction domain GII88_14975 PF00874 PRD domain GII88_14975 PF03610 PTS system fructose IIA component GII88_14985 PF14145 YrhK-like protein GII88_15000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GII88_15000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GII88_15005 PF00248 Aldo/keto reductase family GII88_15010 PF07690 Major Facilitator Superfamily GII88_15015 PF01638 HxlR-like helix-turn-helix GII88_15020 PF03575 Peptidase family S51 GII88_15025 PF02602 Uroporphyrinogen-III synthase HemD GII88_15035 PF01497 Periplasmic binding protein GII88_15040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_15040 PF03466 LysR substrate binding domain GII88_15045 PF07690 Major Facilitator Superfamily GII88_15055 PF00067 Cytochrome P450 GII88_15055 PF00667 FAD binding domain GII88_15055 PF00258 Flavodoxin GII88_15055 PF00175 Oxidoreductase NAD-binding domain GII88_15060 PF00440 Bacterial regulatory proteins, tetR family GII88_15060 PF16295 Tetracyclin repressor-like, C-terminal domain GII88_15065 PF00082 Subtilase family GII88_15065 PF17936 Bacterial Ig domain GII88_15070 PF08241 Methyltransferase domain GII88_15085 PF09501 Probable sporulation protein (Bac_small_yrzI) GII88_15090 PF14143 YrhC-like protein GII88_15095 PF01053 Cys/Met metabolism PLP-dependent enzyme GII88_15100 PF00291 Pyridoxal-phosphate dependent enzyme GII88_15105 PF01048 Phosphorylase superfamily GII88_15110 PF13649 Methyltransferase domain GII88_15115 PF10750 Protein of unknown function (DUF2536) GII88_15120 PF07423 Domain of unknown function (DUF1510) GII88_15125 PF00905 Penicillin binding protein transpeptidase domain GII88_15125 PF03717 Penicillin-binding Protein dimerisation domain GII88_15130 PF01272 Transcription elongation factor, GreA/GreB, C-term GII88_15130 PF03449 Transcription elongation factor, N-terminal GII88_15135 PF00485 Phosphoribulokinase / Uridine kinase family GII88_15155 PF02618 YceG-like family GII88_15160 PF06949 Protein of unknown function (DUF1292) GII88_15165 PF03652 Holliday junction resolvase GII88_15170 PF06135 IreB regulatory phosphoprotein GII88_15175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GII88_15175 PF01411 tRNA synthetases class II (A) GII88_15175 PF02272 DHHA1 domain GII88_15180 PF01594 AI-2E family transporter GII88_15185 PF13056 Protein of unknown function (DUF3918) GII88_15195 PF05239 PRC-barrel domain GII88_15200 PF14490 Helix-hairpin-helix containing domain GII88_15200 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain GII88_15200 PF13538 UvrD-like helicase C-terminal domain GII88_15205 PF07719 Tetratricopeptide repeat GII88_15205 PF13181 Tetratricopeptide repeat GII88_15215 PF00266 Aminotransferase class-V GII88_15220 PF02082 Transcriptional regulator GII88_15225 PF05496 Holliday junction DNA helicase RuvB P-loop domain GII88_15225 PF16193 AAA C-terminal domain GII88_15225 PF12002 MgsA AAA+ ATPase C terminal GII88_15230 PF00899 ThiF family GII88_15240 PF00152 tRNA synthetases class II (D, K and N) GII88_15240 PF02938 GAD domain GII88_15240 PF01336 OB-fold nucleic acid binding domain GII88_15245 PF13393 Histidyl-tRNA synthetase GII88_15245 PF03129 Anticodon binding domain GII88_15250 PF01520 N-acetylmuramoyl-L-alanine amidase GII88_15250 PF08239 Bacterial SH3 domain GII88_15255 PF02580 D-Tyr-tRNA(Tyr) deacylase GII88_15260 PF13291 ACT domain GII88_15260 PF04607 Region found in RelA / SpoT proteins GII88_15260 PF02824 TGS domain GII88_15265 PF00156 Phosphoribosyl transferase domain GII88_15270 PF01368 DHH family GII88_15270 PF10141 Single-strand DNA-specific exonuclease, C terminal domain GII88_15270 PF17768 RecJ OB domain GII88_15270 PF02272 DHHA1 domain GII88_15275 PF06305 Lipopolysaccharide assembly protein A domain GII88_15280 PF02355 Protein export membrane protein GII88_15280 PF07549 SecD/SecF GG Motif GII88_15285 PF13797 Post-transcriptional regulator GII88_15290 PF01943 Polysaccharide biosynthesis protein GII88_15290 PF14667 Polysaccharide biosynthesis C-terminal domain GII88_15295 PF04239 Protein of unknown function (DUF421) GII88_15300 PF12670 Protein of unknown function (DUF3792) GII88_15305 PF02699 Preprotein translocase subunit GII88_15310 PF01702 Queuine tRNA-ribosyltransferase GII88_15315 PF02547 Queuosine biosynthesis protein GII88_15320 PF11146 Protein of unknown function (DUF2905) GII88_15325 PF05491 RuvB C-terminal winged helix domain GII88_15325 PF17864 RuvB AAA lid domain GII88_15325 PF05496 Holliday junction DNA helicase RuvB P-loop domain GII88_15330 PF07499 RuvA, C-terminal domain GII88_15330 PF01330 RuvA N terminal domain GII88_15335 PF08977 Bypass of Forespore C, N terminal GII88_15335 PF08955 BofC C-terminal domain GII88_15345 PF08141 Small acid-soluble spore protein H family GII88_15350 PF05163 DinB family GII88_15355 PF05908 Poly-gamma-glutamate hydrolase GII88_15370 PF01709 Transcriptional regulator GII88_15375 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GII88_15380 PF01476 LysM domain GII88_15385 PF02445 Quinolinate synthetase A protein GII88_15390 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GII88_15390 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GII88_15395 PF00890 FAD binding domain GII88_15395 PF02910 Fumarate reductase flavoprotein C-term GII88_15400 PF00266 Aminotransferase class-V GII88_15405 PF02829 3H domain GII88_15405 PF08279 HTH domain GII88_15410 PF00800 Prephenate dehydratase GII88_15410 PF01842 ACT domain GII88_15415 PF01842 ACT domain GII88_15420 PF01018 GTP1/OBG GII88_15420 PF09269 Domain of unknown function (DUF1967) GII88_15420 PF01926 50S ribosome-binding GTPase GII88_15425 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GII88_15425 PF14682 Sporulation initiation phospho-transferase B, C-terminal GII88_15430 PF01016 Ribosomal L27 protein GII88_15435 PF04327 Cysteine protease Prp GII88_15440 PF00829 Ribosomal prokaryotic L21 protein GII88_15445 PF02163 Peptidase family M50 GII88_15450 PF01551 Peptidase family M23 GII88_15455 PF08327 Activator of Hsp90 ATPase homolog 1-like protein GII88_15460 PF01022 Bacterial regulatory protein, arsR family GII88_15465 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GII88_15470 PF03775 Septum formation inhibitor MinC, C-terminal domain GII88_15475 PF04093 rod shape-determining protein MreD GII88_15480 PF04085 rod shape-determining protein MreC GII88_15490 PF04002 RadC-like JAB domain GII88_15495 PF02545 Maf-like protein GII88_15500 PF05036 Sporulation related domain GII88_15505 PF06750 Bacterial Peptidase A24 N-terminal domain GII88_15505 PF01478 Type IV leader peptidase family GII88_15510 PF02875 Mur ligase family, glutamate ligase domain GII88_15510 PF08245 Mur ligase middle domain GII88_15515 PF08264 Anticodon-binding domain of tRNA GII88_15515 PF10458 Valyl tRNA synthetase tRNA binding arm GII88_15515 PF00133 tRNA synthetases class I (I, L, M and V) GII88_15530 PF01476 LysM domain GII88_15535 PF00202 Aminotransferase class-III GII88_15540 PF00490 Delta-aminolevulinic acid dehydratase GII88_15545 PF02602 Uroporphyrinogen-III synthase HemD GII88_15550 PF03900 Porphobilinogen deaminase, C-terminal domain GII88_15550 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GII88_15555 PF01578 Cytochrome C assembly protein GII88_15560 PF01488 Shikimate / quinate 5-dehydrogenase GII88_15560 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GII88_15560 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GII88_15570 PF01926 50S ribosome-binding GTPase GII88_15575 PF02190 ATP-dependent protease La (LON) substrate-binding domain GII88_15575 PF05362 Lon protease (S16) C-terminal proteolytic domain GII88_15575 PF00004 ATPase family associated with various cellular activities (AAA) GII88_15580 PF00004 ATPase family associated with various cellular activities (AAA) GII88_15580 PF05362 Lon protease (S16) C-terminal proteolytic domain GII88_15585 PF06689 ClpX C4-type zinc finger GII88_15585 PF07724 AAA domain (Cdc48 subfamily) GII88_15585 PF10431 C-terminal, D2-small domain, of ClpB protein GII88_15590 PF05697 Bacterial trigger factor protein (TF) GII88_15590 PF05698 Bacterial trigger factor protein (TF) C-terminus GII88_15590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GII88_15600 PF00694 Aconitase C-terminal domain GII88_15605 PF00330 Aconitase family (aconitate hydratase) GII88_15610 PF00180 Isocitrate/isopropylmalate dehydrogenase GII88_15615 PF08502 LeuA allosteric (dimerisation) domain GII88_15615 PF00682 HMGL-like GII88_15620 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GII88_15620 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GII88_15625 PF10369 Small subunit of acetolactate synthase GII88_15625 PF01842 ACT domain GII88_15630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GII88_15630 PF00205 Thiamine pyrophosphate enzyme, central domain GII88_15630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GII88_15635 PF01063 Amino-transferase class IV GII88_15645 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GII88_15645 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GII88_15665 PF04860 Phage portal protein GII88_15695 PF01381 Helix-turn-helix GII88_15695 PF00145 C-5 cytosine-specific DNA methylase GII88_15710 PF04634 Protein of unknown function, DUF600 GII88_15715 PF04740 LXG domain of WXG superfamily GII88_15720 PF18801 response regulator aspartate phosphatase H, N terminal GII88_15740 PF12850 Calcineurin-like phosphoesterase superfamily domain GII88_15745 PF01725 Ham1 family GII88_15750 PF01138 3' exoribonuclease family, domain 1 GII88_15750 PF03725 3' exoribonuclease family, domain 2 GII88_15755 PF10646 Sporulation and spore germination GII88_15760 PF01177 Asp/Glu/Hydantoin racemase GII88_15765 PF01047 MarR family GII88_15770 PF00196 Bacterial regulatory proteins, luxR family GII88_15775 PF00106 short chain dehydrogenase GII88_15780 PF03061 Thioesterase superfamily GII88_15785 PF13183 4Fe-4S dicluster domain GII88_15785 PF13085 2Fe-2S iron-sulfur cluster binding domain GII88_15790 PF00890 FAD binding domain GII88_15790 PF02910 Fumarate reductase flavoprotein C-term GII88_15795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GII88_15800 PF10702 Protein of unknown function (DUF2507) GII88_15805 PF01842 ACT domain GII88_15805 PF13840 ACT domain GII88_15805 PF00696 Amino acid kinase family GII88_15810 PF01541 GIY-YIG catalytic domain GII88_15810 PF02151 UvrB/uvrC motif GII88_15810 PF08459 UvrC Helix-hairpin-helix N-terminal GII88_15815 PF00085 Thioredoxin GII88_15820 PF01012 Electron transfer flavoprotein domain GII88_15820 PF00766 Electron transfer flavoprotein FAD-binding domain GII88_15825 PF01012 Electron transfer flavoprotein domain GII88_15830 PF00378 Enoyl-CoA hydratase/isomerase GII88_15835 PF00440 Bacterial regulatory proteins, tetR family GII88_15835 PF08359 YsiA-like protein, C-terminal region GII88_15840 PF13193 AMP-binding enzyme C-terminal domain GII88_15840 PF00501 AMP-binding enzyme GII88_15845 PF03994 Domain of Unknown Function (DUF350) GII88_15850 PF00488 MutS domain V GII88_15850 PF01713 Smr domain GII88_15855 PF02811 PHP domain GII88_15855 PF14716 Helix-hairpin-helix domain GII88_15855 PF14791 DNA polymerase beta thumb GII88_15860 PF02674 Colicin V production protein GII88_15865 PF05164 Cell division protein ZapA GII88_15870 PF11858 Domain of unknown function (DUF3378) GII88_15870 PF01351 Ribonuclease HII GII88_15895 PF12399 Branched-chain amino acid ATP-binding cassette transporter GII88_15895 PF00005 ABC transporter GII88_15910 PF03483 B3/4 domain GII88_15910 PF03484 tRNA synthetase B5 domain GII88_15910 PF03147 Ferredoxin-fold anticodon binding domain GII88_15910 PF01588 Putative tRNA binding domain GII88_15910 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GII88_15915 PF01409 tRNA synthetases class II core domain (F) GII88_15915 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GII88_15920 PF08032 RNA 2'-O ribose methyltransferase substrate binding GII88_15920 PF00588 SpoU rRNA Methylase family GII88_15925 PF14098 Small, acid-soluble spore protein I GII88_15930 PF02554 Carbon starvation protein CstA GII88_15930 PF13722 5TM C-terminal transporter carbon starvation CstA GII88_15940 PF06964 Alpha-L-arabinofuranosidase C-terminal domain GII88_15945 PF00528 Binding-protein-dependent transport system inner membrane component GII88_15950 PF00528 Binding-protein-dependent transport system inner membrane component GII88_15955 PF01547 Bacterial extracellular solute-binding protein GII88_15960 PF13685 Iron-containing alcohol dehydrogenase GII88_15965 PF00596 Class II Aldolase and Adducin N-terminal domain GII88_15970 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GII88_15970 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GII88_15975 PF11762 L-arabinose isomerase C-terminal domain GII88_15975 PF02610 L-arabinose isomerase GII88_15980 PF04616 Glycosyl hydrolases family 43 GII88_15985 PF05343 M42 glutamyl aminopeptidase GII88_15995 PF06961 Protein of unknown function (DUF1294) GII88_16000 PF00453 Ribosomal protein L20 GII88_16005 PF01632 Ribosomal protein L35 GII88_16010 PF05198 Translation initiation factor IF-3, N-terminal domain GII88_16010 PF00707 Translation initiation factor IF-3, C-terminal domain GII88_16015 PF04172 LrgB-like family GII88_16020 PF03788 LrgA family GII88_16025 PF16655 PhoD-like phosphatase, N-terminal domain GII88_16025 PF09423 PhoD-like phosphatase GII88_16030 PF00072 Response regulator receiver domain GII88_16030 PF04397 LytTr DNA-binding domain GII88_16035 PF07694 5TMR of 5TMR-LYT GII88_16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_16035 PF06580 Histidine kinase GII88_16050 PF03129 Anticodon binding domain GII88_16050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GII88_16050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GII88_16050 PF02824 TGS domain GII88_16055 PF08812 YtxC-like family GII88_16060 PF09335 SNARE associated Golgi protein GII88_16065 PF01695 IstB-like ATP binding protein GII88_16065 PF07319 Primosomal protein DnaI N-terminus GII88_16070 PF07261 Replication initiation and membrane attachment GII88_16075 PF03477 ATP cone domain GII88_16090 PF02675 S-adenosylmethionine decarboxylase GII88_16095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GII88_16095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GII88_16110 PF01121 Dephospho-CoA kinase GII88_16115 PF02659 Putative manganese efflux pump GII88_16120 PF06827 Zinc finger found in FPG and IleRS GII88_16120 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GII88_16120 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GII88_16125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GII88_16125 PF01367 5'-3' exonuclease, C-terminal SAM fold GII88_16125 PF00476 DNA polymerase family A GII88_16130 PF16736 Single Cache-like GII88_16130 PF00989 PAS fold GII88_16130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_16130 PF00512 His Kinase A (phospho-acceptor) domain GII88_16135 PF00072 Response regulator receiver domain GII88_16135 PF00486 Transcriptional regulatory protein, C terminal GII88_16140 PF00056 lactate/malate dehydrogenase, NAD binding domain GII88_16140 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GII88_16145 PF00180 Isocitrate/isopropylmalate dehydrogenase GII88_16150 PF00285 Citrate synthase, C-terminal domain GII88_16155 PF04284 Protein of unknown function (DUF441) GII88_16160 PF01594 AI-2E family transporter GII88_16165 PF04186 FxsA cytoplasmic membrane protein GII88_16170 PF00224 Pyruvate kinase, barrel domain GII88_16170 PF00391 PEP-utilising enzyme, mobile domain GII88_16170 PF02887 Pyruvate kinase, alpha/beta domain GII88_16175 PF00365 Phosphofructokinase GII88_16180 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GII88_16185 PF17848 Acetyl-coA carboxylase zinc finger domain GII88_16185 PF01039 Carboxyl transferase domain GII88_16190 PF00390 Malic enzyme, N-terminal domain GII88_16190 PF03949 Malic enzyme, NAD binding domain GII88_16195 PF02811 PHP domain GII88_16195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GII88_16195 PF01336 OB-fold nucleic acid binding domain GII88_16195 PF07733 Bacterial DNA polymerase III alpha NTPase domain GII88_16195 PF14579 Helix-hairpin-helix motif GII88_16200 PF14034 Sporulation protein YtrH GII88_16215 PF02272 DHHA1 domain GII88_16215 PF01368 DHH family GII88_16220 PF14007 YtpI-like protein GII88_16225 PF00392 Bacterial regulatory proteins, gntR family GII88_16225 PF07085 DRTGG domain GII88_16225 PF00571 CBS domain GII88_16225 PF03061 Thioesterase superfamily GII88_16230 PF03551 Transcriptional regulator PadR-like family GII88_16230 PF10400 Virulence activator alpha C-term GII88_16245 PF00206 Lyase GII88_16245 PF14698 Argininosuccinate lyase C-terminal GII88_16250 PF00764 Arginosuccinate synthase GII88_16255 PF00994 Probable molybdopterin binding domain GII88_16260 PF00871 Acetokinase family GII88_16265 PF02384 N-6 DNA Methylase GII88_16270 PF08534 Redoxin GII88_16275 PF09579 Sporulation protein YtfJ (Spore_YtfJ) GII88_16280 PF11167 Protein of unknown function (DUF2953) GII88_16285 PF06271 RDD family GII88_16290 PF01343 Peptidase family S49 GII88_16295 PF01513 ATP-NAD kinase GII88_16305 PF07690 Major Facilitator Superfamily GII88_16315 PF13193 AMP-binding enzyme C-terminal domain GII88_16315 PF00501 AMP-binding enzyme GII88_16320 PF00269 Small, acid-soluble spore proteins, alpha/beta type GII88_16325 PF02926 THUMP domain GII88_16325 PF02568 Thiamine biosynthesis protein (ThiI) GII88_16330 PF00266 Aminotransferase class-V GII88_16335 PF05525 Branched-chain amino acid transport protein GII88_16345 PF06160 Septation ring formation regulator, EzrA GII88_16350 PF02811 PHP domain GII88_16355 PF00440 Bacterial regulatory proteins, tetR family GII88_16360 PF13185 GAF domain GII88_16365 PF00990 Diguanylate cyclase, GGDEF domain GII88_16370 PF00163 Ribosomal protein S4/S9 N-terminal domain GII88_16370 PF01479 S4 domain GII88_16385 PF05656 Protein of unknown function (DUF805) GII88_16390 PF12706 Beta-lactamase superfamily domain GII88_16395 PF01037 Lrp/AsnC ligand binding domain GII88_16400 PF00579 tRNA synthetases class I (W and Y) GII88_16400 PF01479 S4 domain GII88_16405 PF13193 AMP-binding enzyme C-terminal domain GII88_16405 PF00501 AMP-binding enzyme GII88_16410 PF00583 Acetyltransferase (GNAT) family GII88_16415 PF00571 CBS domain GII88_16420 PF00850 Histone deacetylase domain GII88_16425 PF00691 OmpA family GII88_16425 PF13677 Membrane MotB of proton-channel complex MotA/MotB GII88_16430 PF01618 MotA/TolQ/ExbB proton channel family GII88_16435 PF00356 Bacterial regulatory proteins, lacI family GII88_16440 PF01817 Chorismate mutase type II GII88_16440 PF00793 DAHP synthetase I family GII88_16450 PF11009 Protein of unknown function (DUF2847) GII88_16455 PF12732 YtxH-like protein GII88_16460 PF06103 Bacterial protein of unknown function (DUF948) GII88_16465 PF02875 Mur ligase family, glutamate ligase domain GII88_16465 PF01225 Mur ligase family, catalytic domain GII88_16465 PF08245 Mur ligase middle domain GII88_16470 PF09397 Ftsk gamma domain GII88_16470 PF17854 FtsK alpha domain GII88_16470 PF01580 FtsK/SpoIIIE family GII88_16475 PF01588 Putative tRNA binding domain GII88_16475 PF14794 Domain of unknown function (DUF4479) GII88_16480 PF07285 Protein of unknown function (DUF1444) GII88_16485 PF00085 Thioredoxin GII88_16490 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ GII88_16495 PF05343 M42 glutamyl aminopeptidase GII88_16500 PF03413 Peptidase propeptide and YPEB domain GII88_16510 PF03949 Malic enzyme, NAD binding domain GII88_16510 PF00390 Malic enzyme, N-terminal domain GII88_16515 PF00753 Metallo-beta-lactamase superfamily GII88_16520 PF02390 Putative methyltransferase GII88_16525 PF14165 YtzH-like protein GII88_16530 PF01636 Phosphotransferase enzyme family GII88_16535 PF00128 Alpha amylase, catalytic domain GII88_16535 PF17999 Pullulanase N1-terminal domain GII88_16535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GII88_16540 PF00781 Diacylglycerol kinase catalytic domain GII88_16555 PF00291 Pyridoxal-phosphate dependent enzyme GII88_16565 PF10903 Protein of unknown function (DUF2691) GII88_16570 PF01546 Peptidase family M20/M25/M40 GII88_16575 PF00860 Permease family GII88_16580 PF08220 DeoR-like helix-turn-helix domain GII88_16585 PF01479 S4 domain GII88_16585 PF00849 RNA pseudouridylate synthase GII88_16590 PF14667 Polysaccharide biosynthesis C-terminal domain GII88_16590 PF01943 Polysaccharide biosynthesis protein GII88_16600 PF02028 BCCT, betaine/carnitine/choline family transporter GII88_16605 PF10957 Sporulation protein Cse60 GII88_16610 PF00581 Rhodanese-like domain GII88_16625 PF04854 Protein of unknown function, DUF624 GII88_16630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GII88_16630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GII88_16640 PF07470 Glycosyl Hydrolase Family 88 GII88_16645 PF00528 Binding-protein-dependent transport system inner membrane component GII88_16650 PF17853 GGDEF-like domain GII88_16650 PF12833 Helix-turn-helix domain GII88_16655 PF13416 Bacterial extracellular solute-binding protein GII88_16660 PF00528 Binding-protein-dependent transport system inner membrane component GII88_16665 PF01370 NAD dependent epimerase/dehydratase family GII88_16670 PF01738 Dienelactone hydrolase family GII88_16680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_16680 PF03466 LysR substrate binding domain GII88_16685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_16690 PF09334 tRNA synthetases class I (M) GII88_16690 PF08264 Anticodon-binding domain of tRNA GII88_16690 PF00133 tRNA synthetases class I (I, L, M and V) GII88_16690 PF13603 Leucyl-tRNA synthetase, Domain 2 GII88_16695 PF14074 Protein of unknown function (DUF4257) GII88_16700 PF07690 Major Facilitator Superfamily GII88_16705 PF03180 NLPA lipoprotein GII88_16710 PF04791 LMBR1-like membrane protein GII88_16715 PF02687 FtsX-like permease family GII88_16715 PF12704 MacB-like periplasmic core domain GII88_16720 PF00005 ABC transporter GII88_16730 PF00005 ABC transporter GII88_16735 PF00392 Bacterial regulatory proteins, gntR family GII88_16740 PF10732 Protein of unknown function (DUF2524) GII88_16745 PF16199 Radical_SAM C-terminal domain GII88_16745 PF04055 Radical SAM superfamily GII88_16750 PF06962 Putative rRNA methylase GII88_16755 PF00375 Sodium:dicarboxylate symporter family GII88_16760 PF10776 Protein of unknown function (DUF2600) GII88_16765 PF12146 Serine aminopeptidase, S33 GII88_16770 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_16775 PF01569 PAP2 superfamily GII88_16780 PF00534 Glycosyl transferases group 1 GII88_16780 PF13439 Glycosyltransferase Family 4 GII88_16785 PF00733 Asparagine synthase GII88_16785 PF13537 Glutamine amidotransferase domain GII88_16790 PF02772 S-adenosylmethionine synthetase, central domain GII88_16790 PF02773 S-adenosylmethionine synthetase, C-terminal domain GII88_16790 PF00438 S-adenosylmethionine synthetase, N-terminal domain GII88_16795 PF01293 Phosphoenolpyruvate carboxykinase GII88_16805 PF10763 Protein of unknown function (DUF2584) GII88_16810 PF00326 Prolyl oligopeptidase family GII88_16820 PF00005 ABC transporter GII88_16825 PF00528 Binding-protein-dependent transport system inner membrane component GII88_16830 PF00293 NUDIX domain GII88_16840 PF05105 Bacteriophage holin family GII88_16845 PF00210 Ferritin-like domain GII88_16855 PF13115 YtkA-like GII88_16860 PF02664 S-Ribosylhomocysteinase (LuxS) GII88_16865 PF01809 Putative membrane protein insertion efficiency factor GII88_16870 PF00484 Carbonic anhydrase GII88_16875 PF02492 CobW/HypB/UreG, nucleotide-binding domain GII88_16875 PF07683 Cobalamin synthesis protein cobW C-terminal domain GII88_16880 PF01297 Zinc-uptake complex component A periplasmic GII88_16885 PF01197 Ribosomal protein L31 GII88_16890 PF01654 Cytochrome bd terminal oxidase subunit I GII88_16895 PF02322 Cytochrome bd terminal oxidase subunit II GII88_16900 PF07561 Domain of Unknown Function (DUF1540) GII88_16910 PF13378 Enolase C-terminal domain-like GII88_16910 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GII88_16915 PF13193 AMP-binding enzyme C-terminal domain GII88_16915 PF00501 AMP-binding enzyme GII88_16920 PF00378 Enoyl-CoA hydratase/isomerase GII88_16925 PF00561 alpha/beta hydrolase fold GII88_16930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GII88_16930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GII88_16930 PF16582 Middle domain of thiamine pyrophosphate GII88_16935 PF00425 chorismate binding enzyme GII88_16940 PF01040 UbiA prenyltransferase family GII88_16945 PF01258 Prokaryotic dksA/traR C4-type zinc finger GII88_16960 PF00483 Nucleotidyl transferase GII88_16965 PF00483 Nucleotidyl transferase GII88_16970 PF00128 Alpha amylase, catalytic domain GII88_16970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GII88_16970 PF02806 Alpha amylase, C-terminal all-beta domain GII88_17090 PF00392 Bacterial regulatory proteins, gntR family GII88_17095 PF09515 Thiamine transporter protein (Thia_YuaJ) GII88_17100 PF04203 Sortase domain GII88_17115 PF18801 response regulator aspartate phosphatase H, N terminal GII88_17120 PF01470 Pyroglutamyl peptidase GII88_17125 PF02080 TrkA-C domain GII88_17125 PF02254 TrkA-N domain GII88_17130 PF02386 Cation transport protein GII88_17140 PF12867 DinB superfamily GII88_17150 PF00465 Iron-containing alcohol dehydrogenase GII88_17170 PF04072 Leucine carboxyl methyltransferase GII88_17175 PF00842 Alanine racemase, C-terminal domain GII88_17175 PF01168 Alanine racemase, N-terminal domain GII88_17180 PF00190 Cupin GII88_17220 PF03747 ADP-ribosylglycohydrolase GII88_17255 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) GII88_17265 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase GII88_17275 PF00149 Calcineurin-like phosphoesterase GII88_17280 PF02673 Bacitracin resistance protein BacA GII88_17285 PF01594 AI-2E family transporter GII88_17290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GII88_17290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GII88_17295 PF01965 DJ-1/PfpI family GII88_17300 PF00672 HAMP domain GII88_17300 PF02743 Cache domain GII88_17300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_17305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_17305 PF00672 HAMP domain GII88_17305 PF02743 Cache domain GII88_17310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_17310 PF00672 HAMP domain GII88_17310 PF02743 Cache domain GII88_17320 PF03060 Nitronate monooxygenase GII88_17325 PF01894 Uncharacterised protein family UPF0047 GII88_17330 PF16657 Maltogenic Amylase, C-terminal domain GII88_17330 PF00128 Alpha amylase, catalytic domain GII88_17345 PF01670 Glycosyl hydrolase family 12 GII88_17350 PF03471 Transporter associated domain GII88_17350 PF00571 CBS domain GII88_17350 PF01595 Cyclin M transmembrane N-terminal domain GII88_17355 PF04298 Putative neutral zinc metallopeptidase GII88_17365 PF11458 Membrane-integrating protein Mistic GII88_17370 PF07885 Ion channel GII88_17370 PF02254 TrkA-N domain GII88_17375 PF08868 YugN-like family GII88_17380 PF04239 Protein of unknown function (DUF421) GII88_17385 PF03073 TspO/MBR family GII88_17390 PF13302 Acetyltransferase (GNAT) domain GII88_17395 PF00342 Phosphoglucose isomerase GII88_17400 PF00465 Iron-containing alcohol dehydrogenase GII88_17405 PF04070 Domain of unknown function (DUF378) GII88_17410 PF00575 S1 RNA binding domain GII88_17415 PF00155 Aminotransferase class I and II GII88_17420 PF01037 Lrp/AsnC ligand binding domain GII88_17425 PF00561 alpha/beta hydrolase fold GII88_17425 PF08386 TAP-like protein GII88_17430 PF08958 Domain of unknown function (DUF1871) GII88_17440 PF00155 Aminotransferase class I and II GII88_17450 PF08810 Kinase associated protein B GII88_17455 PF00929 Exonuclease GII88_17460 PF07690 Major Facilitator Superfamily GII88_17465 PF00905 Penicillin binding protein transpeptidase domain GII88_17465 PF00912 Transglycosylase GII88_17470 PF04134 Protein of unknown function, DUF393 GII88_17475 PF17328 Family of unknown function (DUF5366) GII88_17480 PF17203 Single cache domain 3 GII88_17480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_17480 PF00989 PAS fold GII88_17480 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GII88_17485 PF00072 Response regulator receiver domain GII88_17495 PF01066 CDP-alcohol phosphatidyltransferase GII88_17500 PF09335 SNARE associated Golgi protein GII88_17505 PF02666 Phosphatidylserine decarboxylase GII88_17510 PF03390 2-hydroxycarboxylate transporter family GII88_17520 PF13244 Domain of unknown function (DUF4040) GII88_17520 PF00361 Proton-conducting membrane transporter GII88_17520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GII88_17525 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter GII88_17530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GII88_17535 PF00361 Proton-conducting membrane transporter GII88_17540 PF01899 Na+/H+ ion antiporter subunit GII88_17545 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) GII88_17550 PF03334 Na+/H+ antiporter subunit GII88_17555 PF03061 Thioesterase superfamily GII88_17560 PF00072 Response regulator receiver domain GII88_17560 PF00196 Bacterial regulatory proteins, luxR family GII88_17565 PF07730 Histidine kinase GII88_17565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_17570 PF05952 Bacillus competence pheromone ComX GII88_17580 PF08181 DegQ (SacQ) family GII88_17595 PF08668 HDOD domain GII88_17595 PF00563 EAL domain GII88_17600 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain GII88_17600 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family GII88_17600 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GII88_17605 PF00857 Isochorismatase family GII88_17610 PF07997 Protein of unknown function (DUF1694) GII88_17615 PF14166 YueH-like protein GII88_17625 PF01594 AI-2E family transporter GII88_17630 PF02082 Transcriptional regulator GII88_17635 PF07859 alpha/beta hydrolase fold GII88_17635 PF00331 Glycosyl hydrolase family 10 GII88_17645 PF01966 HD domain GII88_17650 PF00106 short chain dehydrogenase GII88_17655 PF17355 Family of unknown function (DUF5383) GII88_17665 PF01580 FtsK/SpoIIIE family GII88_17665 PF12538 DNA transporter GII88_17670 PF10140 WXG100 protein secretion system (Wss), protein YukC GII88_17675 PF08817 WXG100 protein secretion system (Wss), protein YukD GII88_17680 PF06013 Proteins of 100 residues with WXG GII88_17685 PF01235 Sodium:alanine symporter family GII88_17690 PF17853 GGDEF-like domain GII88_17690 PF06018 CodY GAF-like domain GII88_17690 PF13556 PucR C-terminal helix-turn-helix domain GII88_17695 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GII88_17695 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GII88_17705 PF00174 Oxidoreductase molybdopterin binding domain GII88_17710 PF02632 BioY family GII88_17715 PF13726 Na+-H+ antiporter family GII88_17715 PF03553 Na+/H+ antiporter family GII88_17720 PF02789 Cytosol aminopeptidase family, N-terminal domain GII88_17720 PF00883 Cytosol aminopeptidase family, catalytic domain GII88_17725 PF02681 Divergent PAP2 family GII88_17730 PF06725 3D domain GII88_17735 PF14068 Putative membrane protein GII88_17740 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_17745 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_17755 PF14169 Cold-inducible protein YdjO GII88_17760 PF00583 Acetyltransferase (GNAT) family GII88_17765 PF01521 Iron-sulphur cluster biosynthesis GII88_17770 PF01678 Diaminopimelate epimerase GII88_17775 PF07662 Na+ dependent nucleoside transporter C-terminus GII88_17775 PF01773 Na+ dependent nucleoside transporter N-terminus GII88_17780 PF07293 Protein of unknown function (DUF1450) GII88_17785 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_17790 PF08818 Domain of unknown function (DU1801) GII88_17800 PF18801 response regulator aspartate phosphatase H, N terminal GII88_17805 PF05870 Phenolic acid decarboxylase (PAD) GII88_17815 PF07315 Protein of unknown function (DUF1462) GII88_17820 PF01106 NifU-like domain GII88_17825 PF00326 Prolyl oligopeptidase family GII88_17825 PF07676 WD40-like Beta Propeller Repeat GII88_17830 PF08544 GHMP kinases C terminal GII88_17830 PF00288 GHMP kinases N terminal domain GII88_17835 PF00291 Pyridoxal-phosphate dependent enzyme GII88_17840 PF01842 ACT domain GII88_17840 PF00742 Homoserine dehydrogenase GII88_17840 PF03447 Homoserine dehydrogenase, NAD binding domain GII88_17845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GII88_17845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GII88_17855 PF04608 Phosphatidylglycerophosphatase A GII88_17860 PF13344 Haloacid dehalogenase-like hydrolase GII88_17865 PF01934 Protein of unknown function DUF86 GII88_17870 PF06265 Protein of unknown function (DUF1027) GII88_17875 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GII88_17880 PF04055 Radical SAM superfamily GII88_17880 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GII88_17885 PF01551 Peptidase family M23 GII88_17895 PF00209 Sodium:neurotransmitter symporter family GII88_17900 PF09560 Sporulation protein YunB (Spo_YunB) GII88_17905 PF08827 Domain of unknown function (DUF1805) GII88_17910 PF02872 5'-nucleotidase, C-terminal domain GII88_17915 PF01925 Sulfite exporter TauE/SafE GII88_17920 PF01904 Protein of unknown function DUF72 GII88_17930 PF13977 BetI-type transcriptional repressor, C-terminal GII88_17930 PF00440 Bacterial regulatory proteins, tetR family GII88_17940 PF00266 Aminotransferase class-V GII88_17945 PF01546 Peptidase family M20/M25/M40 GII88_17950 PF13556 PucR C-terminal helix-turn-helix domain GII88_17950 PF17853 GGDEF-like domain GII88_17950 PF07905 Purine catabolism regulatory protein-like family GII88_17955 PF07690 Major Facilitator Superfamily GII88_17960 PF03606 C4-dicarboxylate anaerobic carrier GII88_17965 PF02885 Glycosyl transferase family, helical bundle domain GII88_17965 PF00591 Glycosyl transferase family, a/b domain GII88_17975 PF04231 Endonuclease I GII88_17985 PF01266 FAD dependent oxidoreductase GII88_18000 PF18801 response regulator aspartate phosphatase H, N terminal GII88_18005 PF01458 Uncharacterized protein family (UPF0051) GII88_18010 PF01592 NifU-like N terminal domain GII88_18015 PF00266 Aminotransferase class-V GII88_18020 PF01458 Uncharacterized protein family (UPF0051) GII88_18025 PF00005 ABC transporter GII88_18030 PF16916 Dimerisation domain of Zinc Transporter GII88_18030 PF01545 Cation efflux family GII88_18035 PF02627 Carboxymuconolactone decarboxylase family GII88_18040 PF03180 NLPA lipoprotein GII88_18045 PF00528 Binding-protein-dependent transport system inner membrane component GII88_18050 PF09383 NIL domain GII88_18050 PF00005 ABC transporter GII88_18055 PF02036 SCP-2 sterol transfer family GII88_18060 PF00085 Thioredoxin GII88_18065 PF01751 Toprim domain GII88_18070 PF10830 Protein of unknown function (DUF2553) GII88_18075 PF01597 Glycine cleavage H-protein GII88_18080 PF03960 ArsC family GII88_18085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GII88_18085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GII88_18085 PF02770 Acyl-CoA dehydrogenase, middle domain GII88_18090 PF00108 Thiolase, N-terminal domain GII88_18090 PF02803 Thiolase, C-terminal domain GII88_18095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GII88_18095 PF00378 Enoyl-CoA hydratase/isomerase GII88_18095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GII88_18100 PF14115 YuzL-like protein GII88_18110 PF07875 Coat F domain GII88_18115 PF10835 Protein of unknown function (DUF2573) GII88_18125 PF00005 ABC transporter GII88_18130 PF01032 FecCD transport family GII88_18135 PF01032 FecCD transport family GII88_18140 PF01497 Periplasmic binding protein GII88_18145 PF14039 YusW-like protein GII88_18155 PF00768 D-alanyl-D-alanine carboxypeptidase GII88_18155 PF07943 Penicillin-binding protein 5, C-terminal domain GII88_18160 PF00106 short chain dehydrogenase GII88_18165 PF00210 Ferritin-like domain GII88_18170 PF13180 PDZ domain GII88_18175 PF00486 Transcriptional regulatory protein, C terminal GII88_18175 PF00072 Response regulator receiver domain GII88_18180 PF00512 His Kinase A (phospho-acceptor) domain GII88_18180 PF00672 HAMP domain GII88_18180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_18185 PF00440 Bacterial regulatory proteins, tetR family GII88_18190 PF00206 Lyase GII88_18190 PF10415 Fumarase C C-terminus GII88_18195 PF13113 Protein of unknown function (DUF3970) GII88_18200 PF03323 Bacillus/Clostridium GerA spore germination protein GII88_18205 PF03845 Spore germination protein GII88_18210 PF05504 Spore germination B3/ GerAC like, C-terminal GII88_18220 PF00072 Response regulator receiver domain GII88_18220 PF00196 Bacterial regulatory proteins, luxR family GII88_18225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_18225 PF00672 HAMP domain GII88_18225 PF07730 Histidine kinase GII88_18230 PF09922 Cell wall-active antibiotics response 4TMS YvqF GII88_18240 PF04012 PspA/IM30 family GII88_18250 PF01095 Pectinesterase GII88_18255 PF01923 Cobalamin adenosyltransferase GII88_18275 PF00701 Dihydrodipicolinate synthetase family GII88_18280 PF00005 ABC transporter GII88_18285 PF01032 FecCD transport family GII88_18290 PF01497 Periplasmic binding protein GII88_18295 PF07729 FCD domain GII88_18295 PF00392 Bacterial regulatory proteins, gntR family GII88_18300 PF00106 short chain dehydrogenase GII88_18305 PF03473 MOSC domain GII88_18305 PF03475 3-alpha domain GII88_18310 PF03466 LysR substrate binding domain GII88_18310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_18315 PF00295 Glycosyl hydrolases family 28 GII88_18320 PF08666 SAF domain GII88_18320 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus GII88_18325 PF08125 Mannitol dehydrogenase C-terminal domain GII88_18325 PF01232 Mannitol dehydrogenase Rossmann domain GII88_18330 PF00356 Bacterial regulatory proteins, lacI family GII88_18340 PF02614 Glucuronate isomerase GII88_18345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_18345 PF00512 His Kinase A (phospho-acceptor) domain GII88_18350 PF00486 Transcriptional regulatory protein, C terminal GII88_18350 PF00072 Response regulator receiver domain GII88_18355 PF00005 ABC transporter GII88_18360 PF01032 FecCD transport family GII88_18365 PF01032 FecCD transport family GII88_18370 PF13520 Amino acid permease GII88_18375 PF09575 Small spore protein J (Spore_SspJ) GII88_18380 PF04307 LexA-binding, inner membrane-associated putative hydrolase GII88_18385 PF00884 Sulfatase GII88_18390 PF07690 Major Facilitator Superfamily GII88_18395 PF00248 Aldo/keto reductase family GII88_18400 PF00480 ROK family GII88_18405 PF00266 Aminotransferase class-V GII88_18415 PF13538 UvrD-like helicase C-terminal domain GII88_18420 PF03458 UPF0126 domain GII88_18425 PF13673 Acetyltransferase (GNAT) domain GII88_18425 PF04229 GrpB protein GII88_18430 PF13673 Acetyltransferase (GNAT) domain GII88_18430 PF00583 Acetyltransferase (GNAT) family GII88_18435 PF02600 Disulfide bond formation protein DsbB GII88_18440 PF13462 Thioredoxin GII88_18445 PF00403 Heavy-metal-associated domain GII88_18450 PF13416 Bacterial extracellular solute-binding protein GII88_18455 PF00528 Binding-protein-dependent transport system inner membrane component GII88_18460 PF00528 Binding-protein-dependent transport system inner membrane component GII88_18465 PF01055 Glycosyl hydrolases family 31 GII88_18465 PF13802 Galactose mutarotase-like GII88_18470 PF07691 PA14 domain GII88_18470 PF14310 Fibronectin type III-like domain GII88_18470 PF01915 Glycosyl hydrolase family 3 C-terminal domain GII88_18470 PF00933 Glycosyl hydrolase family 3 N terminal domain GII88_18475 PF00005 ABC transporter GII88_18480 PF00950 ABC 3 transport family GII88_18485 PF01297 Zinc-uptake complex component A periplasmic GII88_18495 PF01380 SIS domain GII88_18495 PF01418 Helix-turn-helix domain, rpiR family GII88_18505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_18505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_18515 PF01116 Fructose-bisphosphate aldolase class-II GII88_18520 PF00403 Heavy-metal-associated domain GII88_18525 PF00403 Heavy-metal-associated domain GII88_18530 PF02583 Metal-sensitive transcriptional repressor GII88_18535 PF01965 DJ-1/PfpI family GII88_18540 PF00455 DeoR C terminal sensor domain GII88_18540 PF08220 DeoR-like helix-turn-helix domain GII88_18545 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GII88_18545 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GII88_18550 PF01261 Xylose isomerase-like TIM barrel GII88_18560 PF00596 Class II Aldolase and Adducin N-terminal domain GII88_18565 PF07690 Major Facilitator Superfamily GII88_18570 PF07690 Major Facilitator Superfamily GII88_18575 PF16715 Cyclodipeptide synthase GII88_18580 PF00067 Cytochrome P450 GII88_18590 PF01047 MarR family GII88_18595 PF01425 Amidase GII88_18600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GII88_18600 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GII88_18605 PF02525 Flavodoxin-like fold GII88_18620 PF04545 Sigma-70, region 4 GII88_18625 PF12841 YvrJ protein family GII88_18630 PF00190 Cupin GII88_18635 PF14184 Regulatory protein YrvL GII88_18660 PF14449 Pre-toxin TG GII88_18660 PF04740 LXG domain of WXG superfamily GII88_18675 PF04239 Protein of unknown function (DUF421) GII88_18680 PF02915 Rubrerythrin GII88_18685 PF07883 Cupin domain GII88_18690 PF08239 Bacterial SH3 domain GII88_18690 PF01183 Glycosyl hydrolases family 25 GII88_18695 PF04688 SPP1 phage holin GII88_18700 PF10779 Haemolysin XhlA GII88_18725 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GII88_18725 PF13457 GW (Gly-Tryp) dipeptide domain GII88_18735 PF01464 Transglycosylase SLT domain GII88_18780 PF00574 Clp protease GII88_18795 PF03354 Phage Terminase GII88_18825 PF11122 Inner spore coat protein D GII88_18850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GII88_18850 PF00476 DNA polymerase family A GII88_18850 PF01367 5'-3' exonuclease, C-terminal SAM fold GII88_18930 PF01668 SmpB protein GII88_18935 PF17876 Cold shock domain GII88_18935 PF08206 Ribonuclease B OB domain GII88_18935 PF00773 RNB domain GII88_18935 PF00575 S1 RNA binding domain GII88_18940 PF12146 Serine aminopeptidase, S33 GII88_18945 PF03840 Preprotein translocase SecG subunit GII88_18950 PF18277 AbrB C-terminal domain GII88_18950 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GII88_18955 PF01381 Helix-turn-helix GII88_18970 PF00528 Binding-protein-dependent transport system inner membrane component GII88_18975 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GII88_18980 PF00528 Binding-protein-dependent transport system inner membrane component GII88_18985 PF00005 ABC transporter GII88_18985 PF00571 CBS domain GII88_18990 PF12802 MarR family GII88_18995 PF01914 MarC family integral membrane protein GII88_19005 PF13240 zinc-ribbon domain GII88_19015 PF01497 Periplasmic binding protein GII88_19025 PF01965 DJ-1/PfpI family GII88_19030 PF03952 Enolase, N-terminal domain GII88_19030 PF00113 Enolase, C-terminal TIM barrel domain GII88_19035 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GII88_19035 PF01676 Metalloenzyme superfamily GII88_19040 PF00121 Triosephosphate isomerase GII88_19045 PF00162 Phosphoglycerate kinase GII88_19050 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GII88_19050 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GII88_19055 PF04198 Putative sugar-binding domain GII88_19060 PF00296 Luciferase-like monooxygenase GII88_19065 PF00324 Amino acid permease GII88_19075 PF00005 ABC transporter GII88_19085 PF02589 LUD domain GII88_19090 PF13183 4Fe-4S dicluster domain GII88_19090 PF02589 LUD domain GII88_19090 PF11870 Domain of unknown function (DUF3390) GII88_19095 PF02754 Cysteine-rich domain GII88_19100 PF00392 Bacterial regulatory proteins, gntR family GII88_19100 PF07729 FCD domain GII88_19105 PF02652 L-lactate permease GII88_19110 PF04963 Sigma-54 factor, core binding domain GII88_19110 PF04552 Sigma-54, DNA binding domain GII88_19110 PF00309 Sigma-54 factor, Activator interacting domain (AID) GII88_19115 PF09628 YvfG protein GII88_19120 PF04230 Polysaccharide pyruvyl transferase GII88_19125 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GII88_19130 PF17836 PglD N-terminal domain GII88_19130 PF00132 Bacterial transferase hexapeptide (six repeats) GII88_19135 PF02397 Bacterial sugar transferase GII88_19140 PF14667 Polysaccharide biosynthesis C-terminal domain GII88_19140 PF01943 Polysaccharide biosynthesis protein GII88_19145 PF00535 Glycosyl transferase family 2 GII88_19150 PF04230 Polysaccharide pyruvyl transferase GII88_19155 PF00535 Glycosyl transferase family 2 GII88_19165 PF13439 Glycosyltransferase Family 4 GII88_19165 PF00534 Glycosyl transferases group 1 GII88_19170 PF00535 Glycosyl transferase family 2 GII88_19175 PF00534 Glycosyl transferases group 1 GII88_19175 PF13439 Glycosyltransferase Family 4 GII88_19180 PF02719 Polysaccharide biosynthesis protein GII88_19185 PF13614 AAA domain GII88_19190 PF02706 Chain length determinant protein GII88_19195 PF01381 Helix-turn-helix GII88_19195 PF08671 Anti-repressor SinI GII88_19200 PF02525 Flavodoxin-like fold GII88_19205 PF07690 Major Facilitator Superfamily GII88_19210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GII88_19210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GII88_19210 PF01842 ACT domain GII88_19215 PF04166 Pyridoxal phosphate biosynthetic protein PdxA GII88_19220 PF17042 Nucleotide-binding C-terminal domain GII88_19220 PF07005 Sugar-binding N-terminal domain GII88_19225 PF00465 Iron-containing alcohol dehydrogenase GII88_19230 PF00701 Dihydrodipicolinate synthetase family GII88_19235 PF02954 Bacterial regulatory protein, Fis family GII88_19235 PF13426 PAS domain GII88_19235 PF00158 Sigma-54 interaction domain GII88_19240 PF01638 HxlR-like helix-turn-helix GII88_19245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GII88_19250 PF02435 Levansucrase/Invertase GII88_19255 PF08244 Glycosyl hydrolases family 32 C terminal GII88_19255 PF00251 Glycosyl hydrolases family 32 N-terminal domain GII88_19270 PF00574 Clp protease GII88_19275 PF03641 Possible lysine decarboxylase GII88_19280 PF03819 MazG nucleotide pyrophosphohydrolase domain GII88_19285 PF01966 HD domain GII88_19290 PF00916 Sulfate permease family GII88_19290 PF01740 STAS domain GII88_19295 PF00484 Carbonic anhydrase GII88_19300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GII88_19300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GII88_19315 PF00545 ribonuclease GII88_19320 PF01337 Barstar (barnase inhibitor) GII88_19325 PF00797 N-acetyltransferase GII88_19330 PF00381 PTS HPr component phosphorylation site GII88_19335 PF02650 WhiA C-terminal HTH domain GII88_19335 PF14527 WhiA LAGLIDADG-like domain GII88_19335 PF10298 WhiA N-terminal LAGLIDADG-like domain GII88_19340 PF01933 Uncharacterised protein family UPF0052 GII88_19345 PF03668 P-loop ATPase protein family GII88_19350 PF00293 NUDIX domain GII88_19360 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_19375 PF01502 Phosphoribosyl-AMP cyclohydrolase GII88_19375 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GII88_19380 PF00977 Histidine biosynthesis protein GII88_19385 PF00977 Histidine biosynthesis protein GII88_19390 PF00117 Glutamine amidotransferase class-I GII88_19395 PF00475 Imidazoleglycerol-phosphate dehydratase GII88_19400 PF00815 Histidinol dehydrogenase GII88_19405 PF01634 ATP phosphoribosyltransferase GII88_19410 PF13393 Histidyl-tRNA synthetase GII88_19415 PF13529 Peptidase_C39 like family GII88_19420 PF03211 Pectate lyase GII88_19425 PF14602 Hexapeptide repeat of succinyl-transferase GII88_19430 PF13419 Haloacid dehalogenase-like hydrolase GII88_19435 PF07670 Nucleoside recognition GII88_19440 PF01790 Prolipoprotein diacylglyceryl transferase GII88_19445 PF07475 HPr Serine kinase C-terminal domain GII88_19445 PF02603 HPr Serine kinase N terminus GII88_19450 PF01047 MarR family GII88_19455 PF07690 Major Facilitator Superfamily GII88_19460 PF00149 Calcineurin-like phosphoesterase GII88_19465 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV GII88_19470 PF04024 PspC domain GII88_19475 PF13349 Putative adhesin GII88_19490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_19500 PF17755 UvrA DNA-binding domain GII88_19500 PF00005 ABC transporter GII88_19500 PF17760 UvrA interaction domain GII88_19505 PF00271 Helicase conserved C-terminal domain GII88_19505 PF17757 UvrB interaction domain GII88_19505 PF12344 Ultra-violet resistance protein B GII88_19505 PF02151 UvrB/uvrC motif GII88_19505 PF04851 Type III restriction enzyme, res subunit GII88_19510 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) GII88_19520 PF17820 PDZ domain GII88_19525 PF17423 Swarming motility protein GII88_19530 PF03572 Peptidase family S41 GII88_19530 PF17820 PDZ domain GII88_19530 PF01471 Putative peptidoglycan binding domain GII88_19535 PF00180 Isocitrate/isopropylmalate dehydrogenase GII88_19540 PF00877 NlpC/P60 family GII88_19545 PF18075 FtsX extracellular domain GII88_19545 PF02687 FtsX-like permease family GII88_19550 PF00005 ABC transporter GII88_19555 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GII88_19560 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GII88_19560 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GII88_19570 PF01043 SecA preprotein cross-linking domain GII88_19570 PF07516 SecA Wing and Scaffold domain GII88_19570 PF02810 SEC-C motif GII88_19570 PF07517 SecA DEAD-like domain GII88_19575 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus GII88_19575 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GII88_19590 PF02561 Flagellar protein FliS GII88_19595 PF02465 Flagellar hook-associated protein 2 N-terminus GII88_19595 PF07195 Flagellar hook-associated protein 2 C-terminus GII88_19595 PF07196 Flagellin hook IN motif GII88_19600 PF03646 FlaG protein GII88_19605 PF00669 Bacterial flagellin N-terminal helical region GII88_19605 PF00700 Bacterial flagellin C-terminal helical region GII88_19610 PF02599 Global regulator protein family GII88_19615 PF02623 FliW protein GII88_19625 PF00669 Bacterial flagellin N-terminal helical region GII88_19625 PF00700 Bacterial flagellin C-terminal helical region GII88_19630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GII88_19630 PF00460 Flagella basal body rod protein GII88_19635 PF05130 FlgN protein GII88_19640 PF04316 Anti-sigma-28 factor, FlgM GII88_19655 PF10719 Late competence development protein ComFB GII88_19660 PF00271 Helicase conserved C-terminal domain GII88_19660 PF04851 Type III restriction enzyme, res subunit GII88_19665 PF02645 Uncharacterised protein, DegV family COG1307 GII88_19670 PF00072 Response regulator receiver domain GII88_19670 PF00196 Bacterial regulatory proteins, luxR family GII88_19675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_19675 PF05384 Sensor protein DegS GII88_19675 PF07730 Histidine kinase GII88_19680 PF01205 Uncharacterized protein family UPF0029 GII88_19680 PF09186 Domain of unknown function (DUF1949) GII88_19685 PF03816 Cell envelope-related transcriptional attenuator domain GII88_19695 PF00953 Glycosyl transferase family 4 GII88_19705 PF00535 Glycosyl transferase family 2 GII88_19710 PF02706 Chain length determinant protein GII88_19715 PF04932 O-Antigen ligase GII88_19720 PF16363 GDP-mannose 4,6 dehydratase GII88_19725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GII88_19725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GII88_19725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GII88_19730 PF13439 Glycosyltransferase Family 4 GII88_19730 PF00534 Glycosyl transferases group 1 GII88_19735 PF01943 Polysaccharide biosynthesis protein GII88_19735 PF14667 Polysaccharide biosynthesis C-terminal domain GII88_19740 PF02397 Bacterial sugar transferase GII88_19745 PF01520 N-acetylmuramoyl-L-alanine amidase GII88_19745 PF04122 Putative cell wall binding repeat 2 GII88_19750 PF08486 Stage II sporulation protein GII88_19750 PF04122 Putative cell wall binding repeat 2 GII88_19760 PF03816 Cell envelope-related transcriptional attenuator domain GII88_19765 PF02350 UDP-N-acetylglucosamine 2-epimerase GII88_19775 PF00483 Nucleotidyl transferase GII88_19780 PF00005 ABC transporter GII88_19785 PF01061 ABC-2 type transporter GII88_19790 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GII88_19790 PF00535 Glycosyl transferase family 2 GII88_19795 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GII88_19800 PF01467 Cytidylyltransferase-like GII88_19805 PF03808 Glycosyl transferase WecB/TagA/CpsF family GII88_19810 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GII88_19815 PF05036 Sporulation related domain GII88_19815 PF08239 Bacterial SH3 domain GII88_19815 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GII88_19820 PF01238 Phosphomannose isomerase type I GII88_19825 PF04055 Radical SAM superfamily GII88_19830 PF13597 Anaerobic ribonucleoside-triphosphate reductase GII88_19830 PF03477 ATP cone domain GII88_19835 PF03812 2-keto-3-deoxygluconate permease GII88_19840 PF01081 KDPG and KHG aldolase GII88_19845 PF00294 pfkB family carbohydrate kinase GII88_19850 PF00356 Bacterial regulatory proteins, lacI family GII88_19855 PF04962 KduI/IolB family GII88_19865 PF00107 Zinc-binding dehydrogenase GII88_19865 PF13823 Alcohol dehydrogenase GroES-associated GII88_19865 PF08240 Alcohol dehydrogenase GroES-like domain GII88_19870 PF00083 Sugar (and other) transporter GII88_19875 PF03816 Cell envelope-related transcriptional attenuator domain GII88_19885 PF00877 NlpC/P60 family GII88_19890 PF09587 Bacterial capsule synthesis protein PGA_cap GII88_19895 PF14102 Capsule biosynthesis CapC GII88_19900 PF08245 Mur ligase middle domain GII88_19905 PF00356 Bacterial regulatory proteins, lacI family GII88_19910 PF00294 pfkB family carbohydrate kinase GII88_19915 PF05025 RbsD / FucU transport protein family GII88_19920 PF00005 ABC transporter GII88_19925 PF02653 Branched-chain amino acid transport system / permease component GII88_19930 PF13407 Periplasmic binding protein domain GII88_19940 PF03306 Alpha-acetolactate decarboxylase GII88_19945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GII88_19945 PF00205 Thiamine pyrophosphate enzyme, central domain GII88_19945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GII88_19950 PF03466 LysR substrate binding domain GII88_19950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_19965 PF13404 AsnC-type helix-turn-helix domain GII88_19965 PF01037 Lrp/AsnC ligand binding domain GII88_19970 PF02417 Chromate transporter GII88_19975 PF02417 Chromate transporter GII88_19985 PF13807 G-rich domain on putative tyrosine kinase GII88_19985 PF02706 Chain length determinant protein GII88_19995 PF04434 SWIM zinc finger GII88_20000 PF12419 SNF2 Helicase protein GII88_20000 PF00176 SNF2 family N-terminal domain GII88_20000 PF00271 Helicase conserved C-terminal domain GII88_20010 PF08220 DeoR-like helix-turn-helix domain GII88_20010 PF00455 DeoR C terminal sensor domain GII88_20015 PF00923 Transaldolase/Fructose-6-phosphate aldolase GII88_20020 PF00106 short chain dehydrogenase GII88_20025 PF03829 PTS system glucitol/sorbitol-specific IIA component GII88_20030 PF03612 Sorbitol phosphotransferase enzyme II N-terminus GII88_20030 PF07663 Sorbitol phosphotransferase enzyme II C-terminus GII88_20035 PF03608 PTS system enzyme II sorbitol-specific factor GII88_20045 PF13936 Helix-turn-helix domain GII88_20045 PF04198 Putative sugar-binding domain GII88_20050 PF00436 Single-strand binding protein family GII88_20060 PF14183 YwpF-like protein GII88_20065 PF01741 Large-conductance mechanosensitive channel, MscL GII88_20070 PF07977 FabA-like domain GII88_20075 PF00460 Flagella basal body rod protein GII88_20075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GII88_20080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GII88_20080 PF00460 Flagella basal body rod protein GII88_20090 PF12116 Stage III sporulation protein D GII88_20100 PF01047 MarR family GII88_20105 PF07690 Major Facilitator Superfamily GII88_20110 PF01569 PAP2 superfamily GII88_20115 PF01368 DHH family GII88_20115 PF02833 DHHA2 domain GII88_20120 PF05067 Manganese containing catalase GII88_20125 PF09844 Uncharacterized conserved protein (COG2071) GII88_20130 PF00571 CBS domain GII88_20135 PF01544 CorA-like Mg2+ transporter protein GII88_20140 PF00571 CBS domain GII88_20140 PF01595 Cyclin M transmembrane N-terminal domain GII88_20140 PF03471 Transporter associated domain GII88_20145 PF00909 Ammonium Transporter Family GII88_20150 PF00543 Nitrogen regulatory protein P-II GII88_20155 PF00574 Clp protease GII88_20160 PF08281 Sigma-70, region 4 GII88_20160 PF12680 SnoaL-like domain GII88_20160 PF04542 Sigma-70 region 2 GII88_20165 PF01551 Peptidase family M23 GII88_20170 PF00583 Acetyltransferase (GNAT) family GII88_20175 PF17370 Family of unknown function (DUF5392) GII88_20180 PF13396 Phospholipase_D-nuclease N-terminal GII88_20180 PF13091 PLD-like domain GII88_20190 PF07690 Major Facilitator Superfamily GII88_20195 PF03621 MbtH-like protein GII88_20200 PF13193 AMP-binding enzyme C-terminal domain GII88_20200 PF00550 Phosphopantetheine attachment site GII88_20200 PF00975 Thioesterase domain GII88_20200 PF00501 AMP-binding enzyme GII88_20200 PF00668 Condensation domain GII88_20205 PF00550 Phosphopantetheine attachment site GII88_20205 PF00857 Isochorismatase family GII88_20210 PF00501 AMP-binding enzyme GII88_20210 PF13193 AMP-binding enzyme C-terminal domain GII88_20215 PF00425 chorismate binding enzyme GII88_20220 PF00106 short chain dehydrogenase GII88_20225 PF00756 Putative esterase GII88_20230 PF01032 FecCD transport family GII88_20235 PF01032 FecCD transport family GII88_20240 PF01497 Periplasmic binding protein GII88_20245 PF12833 Helix-turn-helix domain GII88_20245 PF01497 Periplasmic binding protein GII88_20250 PF17319 Family of unknown function (DUF5362) GII88_20255 PF13460 NAD(P)H-binding GII88_20260 PF02082 Transcriptional regulator GII88_20275 PF06463 Molybdenum Cofactor Synthesis C GII88_20275 PF04055 Radical SAM superfamily GII88_20280 PF02634 FdhD/NarQ family GII88_20285 PF07690 Major Facilitator Superfamily GII88_20290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GII88_20290 PF12838 4Fe-4S dicluster domain GII88_20290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GII88_20290 PF00384 Molybdopterin oxidoreductase GII88_20290 PF01568 Molydopterin dinucleotide binding domain GII88_20295 PF00092 von Willebrand factor type A domain GII88_20300 PF00092 von Willebrand factor type A domain GII88_20305 PF08486 Stage II sporulation protein GII88_20310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GII88_20315 PF08680 TATA-box binding GII88_20320 PF06612 Protein of unknown function (DUF1146) GII88_20325 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GII88_20325 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GII88_20330 PF02874 ATP synthase alpha/beta family, beta-barrel domain GII88_20330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GII88_20335 PF00231 ATP synthase GII88_20340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GII88_20340 PF00306 ATP synthase alpha/beta chain, C terminal domain GII88_20340 PF02874 ATP synthase alpha/beta family, beta-barrel domain GII88_20345 PF00213 ATP synthase delta (OSCP) subunit GII88_20350 PF00430 ATP synthase B/B' CF(0) GII88_20355 PF00137 ATP synthase subunit C GII88_20360 PF00119 ATP synthase A chain GII88_20365 PF03899 ATP synthase I chain GII88_20380 PF00464 Serine hydroxymethyltransferase GII88_20385 PF04260 Protein of unknown function (DUF436) GII88_20390 PF02502 Ribose/Galactose Isomerase GII88_20395 PF01451 Low molecular weight phosphotyrosine protein phosphatase GII88_20400 PF02659 Putative manganese efflux pump GII88_20405 PF01300 Telomere recombination GII88_20405 PF03481 Putative GTP-binding controlling metal-binding GII88_20415 PF09551 Stage II sporulation protein R (spore_II_R) GII88_20420 PF07690 Major Facilitator Superfamily GII88_20425 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GII88_20425 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GII88_20430 PF05116 Sucrose-6F-phosphate phosphohydrolase GII88_20435 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GII88_20440 PF00356 Bacterial regulatory proteins, lacI family GII88_20445 PF17827 PrmC N-terminal domain GII88_20445 PF05175 Methyltransferase small domain GII88_20450 PF00472 RF-1 domain GII88_20450 PF03462 PCRF domain GII88_20455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_20460 PF13411 MerR HTH family regulatory protein GII88_20465 PF03547 Membrane transport protein GII88_20470 PF03949 Malic enzyme, NAD binding domain GII88_20470 PF00390 Malic enzyme, N-terminal domain GII88_20475 PF00265 Thymidine kinase GII88_20480 PF01197 Ribosomal protein L31 GII88_20485 PF07497 Rho termination factor, RNA-binding domain GII88_20485 PF07498 Rho termination factor, N-terminal domain GII88_20485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GII88_20490 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded GII88_20495 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GII88_20500 PF00923 Transaldolase/Fructose-6-phosphate aldolase GII88_20505 PF01116 Fructose-bisphosphate aldolase class-II GII88_20510 PF00072 Response regulator receiver domain GII88_20515 PF10740 Domain of unknown function (DUF2529) GII88_20520 PF00117 Glutamine amidotransferase class-I GII88_20520 PF06418 CTP synthase N-terminus GII88_20525 PF05066 HB1, ASXL, restriction endonuclease HTH domain GII88_20530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GII88_20530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GII88_20530 PF02770 Acyl-CoA dehydrogenase, middle domain GII88_20535 PF02770 Acyl-CoA dehydrogenase, middle domain GII88_20535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GII88_20535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GII88_20540 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GII88_20540 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GII88_20545 PF02803 Thiolase, C-terminal domain GII88_20545 PF00108 Thiolase, N-terminal domain GII88_20550 PF13183 4Fe-4S dicluster domain GII88_20550 PF02754 Cysteine-rich domain GII88_20555 PF13091 PLD-like domain GII88_20570 PF00750 tRNA synthetases class I (R) GII88_20570 PF05746 DALR anticodon binding domain GII88_20570 PF03485 Arginyl tRNA synthetase N terminal domain GII88_20575 PF09148 Domain of unknown function (DUF1934) GII88_20580 PF00491 Arginase family GII88_20585 PF17284 Spermidine synthase tetramerisation domain GII88_20600 PF00912 Transglycosylase GII88_20600 PF00905 Penicillin binding protein transpeptidase domain GII88_20605 PF08741 YwhD family GII88_20610 PF02163 Peptidase family M50 GII88_20615 PF01361 Tautomerase enzyme GII88_20630 PF01966 HD domain GII88_20635 PF07293 Protein of unknown function (DUF1450) GII88_20645 PF14154 Domain of unknown function (DUF4306) GII88_20650 PF03099 Biotin/lipoate A/B protein ligase family GII88_20655 PF01494 FAD binding domain GII88_20660 PF07690 Major Facilitator Superfamily GII88_20670 PF01361 Tautomerase enzyme GII88_20680 PF00171 Aldehyde dehydrogenase family GII88_20685 PF09339 IclR helix-turn-helix domain GII88_20685 PF01614 Bacterial transcriptional regulator GII88_20695 PF01515 Phosphate acetyl/butaryl transferase GII88_20705 PF17735 Biofilm surface layer A GII88_20715 PF02386 Cation transport protein GII88_20720 PF09671 Spore coat protein (Spore_GerQ) GII88_20735 PF00005 ABC transporter GII88_20745 PF00072 Response regulator receiver domain GII88_20745 PF00196 Bacterial regulatory proteins, luxR family GII88_20750 PF04241 Protein of unknown function (DUF423) GII88_20755 PF00860 Permease family GII88_20760 PF17261 Family of unknown function (DUF5327) GII88_20765 PF00171 Aldehyde dehydrogenase family GII88_20770 PF03167 Uracil DNA glycosylase superfamily GII88_20775 PF00535 Glycosyl transferase family 2 GII88_20780 PF08543 Phosphomethylpyrimidine kinase GII88_20790 PF08244 Glycosyl hydrolases family 32 C terminal GII88_20790 PF00251 Glycosyl hydrolases family 32 N-terminal domain GII88_20795 PF02378 Phosphotransferase system, EIIC GII88_20795 PF00367 phosphotransferase system, EIIB GII88_20800 PF03123 CAT RNA binding domain GII88_20800 PF00874 PRD domain GII88_20810 PF05922 Peptidase inhibitor I9 GII88_20810 PF13860 FlgD Ig-like domain GII88_20810 PF00082 Subtilase family GII88_20810 PF02225 PA domain GII88_20820 PF00296 Luciferase-like monooxygenase GII88_20825 PF00881 Nitroreductase family GII88_20830 PF07687 Peptidase dimerisation domain GII88_20830 PF01546 Peptidase family M20/M25/M40 GII88_20840 PF01098 Cell cycle protein GII88_20855 PF17368 Spore morphogenesis and germination YwcE GII88_20865 PF00583 Acetyltransferase (GNAT) family GII88_20870 PF00005 ABC transporter GII88_20875 PF00005 ABC transporter GII88_20895 PF00196 Bacterial regulatory proteins, luxR family GII88_20895 PF00072 Response regulator receiver domain GII88_20900 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GII88_20905 PF00510 Cytochrome c oxidase subunit III GII88_20910 PF00115 Cytochrome C and Quinol oxidase polypeptide I GII88_20915 PF02790 Cytochrome C oxidase subunit II, transmembrane domain GII88_20915 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GII88_20920 PF16363 GDP-mannose 4,6 dehydratase GII88_20940 PF04341 Protein of unknown function, DUF485 GII88_20945 PF00474 Sodium:solute symporter family GII88_20950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GII88_20950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GII88_20955 PF01261 Xylose isomerase-like TIM barrel GII88_20960 PF00480 ROK family GII88_20965 PF02581 Thiamine monophosphate synthase GII88_20970 PF02110 Hydroxyethylthiazole kinase family GII88_20975 PF03466 LysR substrate binding domain GII88_20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GII88_20990 PF03788 LrgA family GII88_20995 PF04172 LrgB-like family GII88_21005 PF00474 Sodium:solute symporter family GII88_21010 PF17785 PUA-like domain GII88_21010 PF10672 S-adenosylmethionine-dependent methyltransferase GII88_21015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GII88_21020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GII88_21020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GII88_21025 PF01501 Glycosyl transferase family 8 GII88_21035 PF07730 Histidine kinase GII88_21035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_21040 PF00196 Bacterial regulatory proteins, luxR family GII88_21040 PF00072 Response regulator receiver domain GII88_21045 PF03176 MMPL family GII88_21050 PF09529 Integral membrane protein (intg_mem_TP0381) GII88_21055 PF07690 Major Facilitator Superfamily GII88_21060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GII88_21060 PF13378 Enolase C-terminal domain-like GII88_21065 PF01081 KDPG and KHG aldolase GII88_21070 PF00294 pfkB family carbohydrate kinase GII88_21075 PF09339 IclR helix-turn-helix domain GII88_21075 PF01614 Bacterial transcriptional regulator GII88_21080 PF02225 PA domain GII88_21080 PF04389 Peptidase family M28 GII88_21085 PF07690 Major Facilitator Superfamily GII88_21095 PF04607 Region found in RelA / SpoT proteins GII88_21105 PF12459 D-Ala-teichoic acid biosynthesis protein GII88_21110 PF13193 AMP-binding enzyme C-terminal domain GII88_21110 PF00501 AMP-binding enzyme GII88_21115 PF03062 MBOAT, membrane-bound O-acyltransferase family GII88_21120 PF00550 Phosphopantetheine attachment site GII88_21125 PF04914 DltD protein GII88_21130 PF01063 Amino-transferase class IV GII88_21135 PF07690 Major Facilitator Superfamily GII88_21140 PF02056 Family 4 glycosyl hydrolase GII88_21140 PF11975 Family 4 glycosyl hydrolase C-terminal domain GII88_21145 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GII88_21150 PF02378 Phosphotransferase system, EIIC GII88_21155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GII88_21160 PF00874 PRD domain GII88_21160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GII88_21160 PF05043 Mga helix-turn-helix domain GII88_21160 PF08279 HTH domain GII88_21165 PF02245 Methylpurine-DNA glycosylase (MPG) GII88_21170 PF07729 FCD domain GII88_21170 PF00392 Bacterial regulatory proteins, gntR family GII88_21175 PF00285 Citrate synthase, C-terminal domain GII88_21180 PF03972 MmgE/PrpD family GII88_21200 PF00005 ABC transporter GII88_21200 PF00664 ABC transporter transmembrane region GII88_21205 PF13472 GDSL-like Lipase/Acylhydrolase family GII88_21210 PF17735 Biofilm surface layer A GII88_21215 PF17735 Biofilm surface layer A GII88_21220 PF07690 Major Facilitator Superfamily GII88_21225 PF12679 ABC-2 family transporter protein GII88_21230 PF13732 Domain of unknown function (DUF4162) GII88_21230 PF00005 ABC transporter GII88_21235 PF13396 Phospholipase_D-nuclease N-terminal GII88_21250 PF04542 Sigma-70 region 2 GII88_21250 PF08281 Sigma-70, region 4 GII88_21255 PF07690 Major Facilitator Superfamily GII88_21260 PF06628 Catalase-related immune-responsive GII88_21260 PF00199 Catalase GII88_21265 PF00199 Catalase GII88_21265 PF06628 Catalase-related immune-responsive GII88_21270 PF01475 Ferric uptake regulator family GII88_21280 PF12679 ABC-2 family transporter protein GII88_21285 PF00005 ABC transporter GII88_21300 PF00005 ABC transporter GII88_21320 PF00082 Subtilase family GII88_21325 PF03412 Peptidase C39 family GII88_21325 PF00664 ABC transporter transmembrane region GII88_21325 PF00005 ABC transporter GII88_21335 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) GII88_21340 PF14867 Lantibiotic alpha GII88_21350 PF00544 Pectate lyase GII88_21355 PF01256 Carbohydrate kinase GII88_21360 PF00005 ABC transporter GII88_21360 PF00664 ABC transporter transmembrane region GII88_21365 PF00005 ABC transporter GII88_21365 PF00664 ABC transporter transmembrane region GII88_21370 PF02322 Cytochrome bd terminal oxidase subunit II GII88_21375 PF01654 Cytochrome bd terminal oxidase subunit I GII88_21385 PF01226 Formate/nitrite transporter GII88_21395 PF00390 Malic enzyme, N-terminal domain GII88_21395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GII88_21395 PF03949 Malic enzyme, NAD binding domain GII88_21400 PF03553 Na+/H+ antiporter family GII88_21405 PF00206 Lyase GII88_21405 PF10415 Fumarase C C-terminus GII88_21410 PF17763 Glutaminase/Asparaginase C-terminal domain GII88_21410 PF00710 Asparaginase, N-terminal GII88_21415 PF01381 Helix-turn-helix GII88_21420 PF10282 Lactonase, 7-bladed beta-propeller GII88_21425 PF00486 Transcriptional regulatory protein, C terminal GII88_21425 PF00072 Response regulator receiver domain GII88_21430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_21440 PF00005 ABC transporter GII88_21445 PF02687 FtsX-like permease family GII88_21450 PF06486 Protein of unknown function (DUF1093) GII88_21460 PF01522 Polysaccharide deacetylase GII88_21465 PF00155 Aminotransferase class I and II GII88_21465 PF00392 Bacterial regulatory proteins, gntR family GII88_21475 PF03390 2-hydroxycarboxylate transporter family GII88_21480 PF03009 Glycerophosphoryl diester phosphodiesterase family GII88_21485 PF05901 Excalibur calcium-binding domain GII88_21495 PF00884 Sulfatase GII88_21500 PF17353 Family of unknown function (DUF5381) GII88_21505 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GII88_21505 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GII88_21510 PF01316 Arginine repressor, DNA binding domain GII88_21510 PF02863 Arginine repressor, C-terminal domain GII88_21525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GII88_21525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GII88_21530 PF13520 Amino acid permease GII88_21535 PF00696 Amino acid kinase family GII88_21550 PF02378 Phosphotransferase system, EIIC GII88_21560 PF04542 Sigma-70 region 2 GII88_21560 PF08281 Sigma-70, region 4 GII88_21565 PF04055 Radical SAM superfamily GII88_21585 PF01434 Peptidase family M41 GII88_21585 PF06480 FtsH Extracellular GII88_21585 PF17862 AAA+ lid domain GII88_21585 PF00004 ATPase family associated with various cellular activities (AAA) GII88_21590 PF07687 Peptidase dimerisation domain GII88_21590 PF01546 Peptidase family M20/M25/M40 GII88_21600 PF00251 Glycosyl hydrolases family 32 N-terminal domain GII88_21600 PF08244 Glycosyl hydrolases family 32 C terminal GII88_21605 PF01306 LacY proton/sugar symporter GII88_21610 PF00356 Bacterial regulatory proteins, lacI family GII88_21625 PF01717 Cobalamin-independent synthase, Catalytic domain GII88_21630 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase GII88_21635 PF00535 Glycosyl transferase family 2 GII88_21640 PF01370 NAD dependent epimerase/dehydratase family GII88_21665 PF01773 Na+ dependent nucleoside transporter N-terminus GII88_21665 PF07662 Na+ dependent nucleoside transporter C-terminus GII88_21680 PF00232 Glycosyl hydrolase family 1 GII88_21685 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GII88_21685 PF00367 phosphotransferase system, EIIB GII88_21685 PF02378 Phosphotransferase system, EIIC GII88_21690 PF03123 CAT RNA binding domain GII88_21690 PF00874 PRD domain GII88_21695 PF02361 Cobalt transport protein GII88_21700 PF00005 ABC transporter GII88_21705 PF09819 ABC-type cobalt transport system, permease component GII88_21710 PF03070 TENA/THI-4/PQQC family GII88_21715 PF00463 Isocitrate lyase family GII88_21720 PF01274 Malate synthase GII88_21730 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase GII88_21735 PF02687 FtsX-like permease family GII88_21740 PF00005 ABC transporter GII88_21745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_21750 PF00072 Response regulator receiver domain GII88_21750 PF00486 Transcriptional regulatory protein, C terminal GII88_21755 PF00232 Glycosyl hydrolase family 1 GII88_21760 PF00367 phosphotransferase system, EIIB GII88_21760 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GII88_21760 PF02378 Phosphotransferase system, EIIC GII88_21770 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family GII88_21775 PF02463 RecF/RecN/SMC N terminal domain GII88_21780 PF04616 Glycosyl hydrolases family 43 GII88_21780 PF16369 C-terminal lipocalin-like domain GII88_21785 PF03880 DbpA RNA binding domain GII88_21785 PF00271 Helicase conserved C-terminal domain GII88_21785 PF00270 DEAD/DEAH box helicase GII88_21815 PF00591 Glycosyl transferase family, a/b domain GII88_21815 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain GII88_21815 PF02885 Glycosyl transferase family, helical bundle domain GII88_21820 PF01773 Na+ dependent nucleoside transporter N-terminus GII88_21820 PF07662 Na+ dependent nucleoside transporter C-terminus GII88_21825 PF01791 DeoC/LacD family aldolase GII88_21830 PF04198 Putative sugar-binding domain GII88_21845 PF00990 Diguanylate cyclase, GGDEF domain GII88_21850 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) GII88_21860 PF03170 Bacterial cellulose synthase subunit GII88_21865 PF00155 Aminotransferase class I and II GII88_21880 PF07478 D-ala D-ala ligase C-terminus GII88_21890 PF01116 Fructose-bisphosphate aldolase class-II GII88_21895 PF01261 Xylose isomerase-like TIM barrel GII88_21900 PF01261 Xylose isomerase-like TIM barrel GII88_21905 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GII88_21905 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GII88_21910 PF07690 Major Facilitator Superfamily GII88_21915 PF01261 Xylose isomerase-like TIM barrel GII88_21920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GII88_21920 PF00205 Thiamine pyrophosphate enzyme, central domain GII88_21920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GII88_21925 PF00294 pfkB family carbohydrate kinase GII88_21930 PF04962 KduI/IolB family GII88_21935 PF00171 Aldehyde dehydrogenase family GII88_21940 PF08220 DeoR-like helix-turn-helix domain GII88_21940 PF00455 DeoR C terminal sensor domain GII88_21945 PF00248 Aldo/keto reductase family GII88_21950 PF03009 Glycerophosphoryl diester phosphodiesterase family GII88_21955 PF07690 Major Facilitator Superfamily GII88_21960 PF00183 Hsp90 protein GII88_21965 PF12848 ABC transporter GII88_21965 PF00005 ABC transporter GII88_21990 PF01497 Periplasmic binding protein GII88_22010 PF02421 Ferrous iron transport protein B GII88_22010 PF07664 Ferrous iron transport protein B C terminus GII88_22010 PF07670 Nucleoside recognition GII88_22010 PF17910 FeoB cytosolic helical domain GII88_22020 PF01757 Acyltransferase family GII88_22025 PF02687 FtsX-like permease family GII88_22030 PF00005 ABC transporter GII88_22035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_22040 PF00486 Transcriptional regulatory protein, C terminal GII88_22040 PF00072 Response regulator receiver domain GII88_22050 PF00672 HAMP domain GII88_22050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GII88_22050 PF05227 CHASE3 domain GII88_22055 PF01235 Sodium:alanine symporter family GII88_22060 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GII88_22060 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GII88_22065 PF07745 Glycosyl hydrolase family 53 GII88_22070 PF08533 Beta-galactosidase C-terminal domain GII88_22070 PF08532 Beta-galactosidase trimerisation domain GII88_22070 PF02449 Beta-galactosidase GII88_22075 PF00528 Binding-protein-dependent transport system inner membrane component GII88_22080 PF00528 Binding-protein-dependent transport system inner membrane component GII88_22085 PF13416 Bacterial extracellular solute-binding protein GII88_22090 PF00356 Bacterial regulatory proteins, lacI family GII88_22095 PF08544 GHMP kinases C terminal GII88_22095 PF00288 GHMP kinases N terminal domain GII88_22095 PF10509 Galactokinase galactose-binding signature GII88_22100 PF16363 GDP-mannose 4,6 dehydratase GII88_22105 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain GII88_22105 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain GII88_22110 PF01325 Iron dependent repressor, N-terminal DNA binding domain GII88_22110 PF00480 ROK family GII88_22115 PF07729 FCD domain GII88_22115 PF00392 Bacterial regulatory proteins, gntR family GII88_22120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GII88_22120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GII88_22125 PF02447 GntP family permease GII88_22130 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GII88_22130 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain GII88_22135 PF00465 Iron-containing alcohol dehydrogenase GII88_22135 PF00171 Aldehyde dehydrogenase family GII88_22140 PF00578 AhpC/TSA family GII88_22145 PF07992 Pyridine nucleotide-disulphide oxidoreductase GII88_22145 PF13192 Thioredoxin domain GII88_22170 PF00005 ABC transporter GII88_22185 PF00072 Response regulator receiver domain GII88_22185 PF00196 Bacterial regulatory proteins, luxR family GII88_22200 PF00027 Cyclic nucleotide-binding domain GII88_22200 PF00005 ABC transporter GII88_22210 PF02590 Predicted SPOUT methyltransferase GII88_22215 PF14116 YyzF-like protein GII88_22225 PF00583 Acetyltransferase (GNAT) family GII88_22240 PF13180 PDZ domain GII88_22245 PF00753 Metallo-beta-lactamase superfamily GII88_22250 PF09648 YycH protein GII88_22255 PF07435 YycH protein GII88_22260 PF00672 HAMP domain GII88_22260 PF13426 PAS domain GII88_22260 PF00512 His Kinase A (phospho-acceptor) domain GII88_22260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GII88_22265 PF00072 Response regulator receiver domain GII88_22265 PF00486 Transcriptional regulatory protein, C terminal GII88_22290 PF00293 NUDIX domain GII88_22295 PF00709 Adenylosuccinate synthetase GII88_22305 PF03796 DnaB-like helicase C terminal domain GII88_22305 PF00772 DnaB-like helicase N terminal domain GII88_22310 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) GII88_22320 PF14174 YycC-like protein GII88_22325 PF07690 Major Facilitator Superfamily GII88_22330 PF01979 Amidohydrolase family GII88_22335 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GII88_22345 PF01380 SIS domain GII88_22350 PF00367 phosphotransferase system, EIIB GII88_22350 PF02378 Phosphotransferase system, EIIC GII88_22355 PF03948 Ribosomal protein L9, C-terminal domain GII88_22355 PF01281 Ribosomal protein L9, N-terminal domain GII88_22360 PF02272 DHHA1 domain GII88_22360 PF01368 DHH family GII88_22365 PF09991 Predicted membrane protein (DUF2232) GII88_22370 PF07875 Coat F domain GII88_22375 PF00582 Universal stress protein family GII88_22380 PF01740 STAS domain GII88_22380 PF00916 Sulfate permease family GII88_22385 PF07690 Major Facilitator Superfamily GII88_22390 PF01084 Ribosomal protein S18 GII88_22395 PF00436 Single-strand binding protein family GII88_22400 PF01250 Ribosomal protein S6 GII88_22405 PF06071 Protein of unknown function (DUF933) GII88_22405 PF01926 50S ribosome-binding GTPase GII88_22415 PF06107 Bacterial protein of unknown function (DUF951) GII88_22425 PF06866 Protein of unknown function (DUF1256) GII88_22430 PF02195 ParB-like nuclease domain GII88_22430 PF17762 HTH domain found in ParB protein GII88_22435 PF13614 AAA domain GII88_22440 PF02627 Carboxymuconolactone decarboxylase family GII88_22450 PF17762 HTH domain found in ParB protein GII88_22450 PF02195 ParB-like nuclease domain GII88_22455 PF02527 rRNA small subunit methyltransferase G GII88_22460 PF13932 GidA associated domain GII88_22460 PF01134 Glucose inhibited division protein A GII88_22465 PF01926 50S ribosome-binding GTPase GII88_22465 PF12631 MnmE helical domain GII88_22465 PF10396 GTP-binding protein TrmE N-terminus GII88_22470 PF14804 Jag N-terminus GII88_22470 PF01424 R3H domain GII88_22475 PF02096 60Kd inner membrane protein GII88_22480 PF00825 Ribonuclease P GII88_22485 PF00468 Ribosomal protein L34 GII88_22505 PF02600 Disulfide bond formation protein DsbB GII88_22525 PF01446 Replication protein GII88_22530 PF18801 response regulator aspartate phosphatase H, N terminal GII88_22530 PF13181 Tetratricopeptide repeat