locus-tag class description B34_00001 PF17447 Uncharacterized YkpC-like B34_00003 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin B34_00003 PF18277 AbrB C-terminal domain B34_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_00004 PF00512 His Kinase A (phospho-acceptor) domain B34_00004 PF00989 PAS fold B34_00005 PF02254 TrkA-N domain B34_00005 PF02080 TrkA-C domain B34_00006 PF13382 Adenine deaminase C-terminal domain B34_00006 PF01979 Amidohydrolase family B34_00007 PF17770 Ribonuclease J C-terminal domain B34_00007 PF00753 Metallo-beta-lactamase superfamily B34_00007 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain B34_00010 PF01327 Polypeptide deformylase B34_00012 PF10368 Putative cell-wall binding lipoprotein B34_00013 PF00676 Dehydrogenase E1 component B34_00014 PF02779 Transketolase, pyrimidine binding domain B34_00014 PF02780 Transketolase, C-terminal domain B34_00015 PF02817 e3 binding domain B34_00015 PF00364 Biotin-requiring enzyme B34_00015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) B34_00016 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_00016 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B34_00019 PF13790 SR1 protein B34_00020 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain B34_00020 PF01276 Orn/Lys/Arg decarboxylase, major domain B34_00021 PF05256 Uncharacterised protein family (UPF0223) B34_00022 PF06335 Protein of unknown function (DUF1054) B34_00024 PF00459 Inositol monophosphatase family B34_00025 PF00583 Acetyltransferase (GNAT) family B34_00028 PF04542 Sigma-70 region 2 B34_00028 PF08281 Sigma-70, region 4 B34_00029 PF13490 Putative zinc-finger B34_00032 PF14036 YlaH-like protein B34_00033 PF01047 MarR family B34_00034 PF01494 FAD binding domain B34_00035 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) B34_00036 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) B34_00037 PF02562 PhoH-like protein B34_00037 PF13638 PIN domain B34_00039 PF04960 Glutaminase B34_00040 PF07408 Protein of unknown function (DUF1507) B34_00041 PF01098 Cell cycle protein B34_00042 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B34_00042 PF00364 Biotin-requiring enzyme B34_00042 PF00289 Biotin carboxylase, N-terminal domain B34_00042 PF02785 Biotin carboxylase C-terminal domain B34_00042 PF00682 HMGL-like B34_00042 PF02436 Conserved carboxylase domain B34_00043 PF02628 Cytochrome oxidase assembly protein B34_00044 PF01040 UbiA prenyltransferase family B34_00045 PF00116 Cytochrome C oxidase subunit II, periplasmic domain B34_00045 PF00034 Cytochrome c B34_00045 PF02790 Cytochrome C oxidase subunit II, transmembrane domain B34_00046 PF00115 Cytochrome C and Quinol oxidase polypeptide I B34_00047 PF00510 Cytochrome c oxidase subunit III B34_00048 PF03626 Prokaryotic Cytochrome C oxidase subunit IV B34_00049 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) B34_00050 PF08868 YugN-like family B34_00051 PF00571 CBS domain B34_00052 PF00188 Cysteine-rich secretory protein family B34_00052 PF14504 CAP-associated N-terminal B34_00053 PF14071 Putative coat protein B34_00054 PF14003 YlbE-like protein B34_00055 PF06133 Control of competence regulator ComK, YlbF/YmcA B34_00056 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) B34_00059 PF01467 Cytidylyltransferase-like B34_00060 PF07670 Nucleoside recognition B34_00061 PF05362 Lon protease (S16) C-terminal proteolytic domain B34_00061 PF13180 PDZ domain B34_00062 PF05636 HIGH Nucleotidyl Transferase B34_00063 PF02620 Large ribosomal RNA subunit accumulation protein YceD B34_00064 PF01783 Ribosomal L32p protein family B34_00066 PF00583 Acetyltransferase (GNAT) family B34_00067 PF08546 Ketopantoate reductase PanE/ApbA C terminal B34_00067 PF02558 Ketopantoate reductase PanE/ApbA B34_00068 PF10079 Bacillithiol biosynthesis BshC B34_00069 PF02381 MraZ protein, putative antitoxin-like B34_00070 PF01795 MraW methylase family B34_00073 PF03793 PASTA domain B34_00073 PF03717 Penicillin-binding Protein dimerisation domain B34_00073 PF00905 Penicillin binding protein transpeptidase domain B34_00075 PF08245 Mur ligase middle domain B34_00075 PF02875 Mur ligase family, glutamate ligase domain B34_00075 PF01225 Mur ligase family, catalytic domain B34_00076 PF00953 Glycosyl transferase family 4 B34_00076 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 B34_00077 PF08245 Mur ligase middle domain B34_00077 PF02875 Mur ligase family, glutamate ligase domain B34_00078 PF01098 Cell cycle protein B34_00079 PF04101 Glycosyltransferase family 28 C-terminal domain B34_00079 PF03033 Glycosyltransferase family 28 N-terminal domain B34_00080 PF01565 FAD binding domain B34_00080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain B34_00081 PF08478 POTRA domain, FtsQ-type B34_00082 PF05949 Bacterial protein of unknown function (DUF881) B34_00083 PF05949 Bacterial protein of unknown function (DUF881) B34_00084 PF06947 Protein of unknown function (DUF1290) B34_00085 PF02491 SHS2 domain inserted in FTSA B34_00086 PF00091 Tubulin/FtsZ family, GTPase domain B34_00086 PF12327 FtsZ family, C-terminal domain B34_00087 PF00082 Subtilase family B34_00087 PF05922 Peptidase inhibitor I9 B34_00088 PF00082 Subtilase family B34_00088 PF05922 Peptidase inhibitor I9 B34_00089 PF00082 Subtilase family B34_00089 PF05922 Peptidase inhibitor I9 B34_00090 PF03419 Sporulation factor SpoIIGA B34_00091 PF04545 Sigma-70, region 4 B34_00091 PF04542 Sigma-70 region 2 B34_00092 PF04545 Sigma-70, region 4 B34_00092 PF04539 Sigma-70 region 3 B34_00092 PF04542 Sigma-70 region 2 B34_00093 PF00005 ABC transporter B34_00094 PF08241 Methyltransferase domain B34_00095 PF05239 PRC-barrel domain B34_00097 PF01168 Alanine racemase, N-terminal domain B34_00098 PF04472 Cell division protein SepF B34_00099 PF02325 YGGT family B34_00100 PF17774 Putative RNA-binding domain in YlmH B34_00100 PF01479 S4 domain B34_00101 PF05103 DivIVA protein B34_00102 PF08264 Anticodon-binding domain of tRNA B34_00102 PF06827 Zinc finger found in FPG and IleRS B34_00102 PF00133 tRNA synthetases class I (I, L, M and V) B34_00103 PF01258 Prokaryotic dksA/traR C4-type zinc finger B34_00104 PF01252 Signal peptidase (SPase) II B34_00105 PF00849 RNA pseudouridylate synthase B34_00105 PF01479 S4 domain B34_00106 PF00156 Phosphoribosyl transferase domain B34_00107 PF00860 Permease family B34_00108 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain B34_00108 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain B34_00109 PF01979 Amidohydrolase family B34_00110 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain B34_00110 PF00117 Glutamine amidotransferase class-I B34_00111 PF02142 MGS-like domain B34_00111 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B34_00111 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B34_00112 PF00175 Oxidoreductase NAD-binding domain B34_00112 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B B34_00113 PF01180 Dihydroorotate dehydrogenase B34_00114 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family B34_00115 PF00156 Phosphoribosyl transferase domain B34_00117 PF01507 Phosphoadenosine phosphosulfate reductase family B34_00118 PF01384 Phosphate transporter family B34_00119 PF01747 ATP-sulfurylase B34_00119 PF14306 PUA-like domain B34_00121 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B34_00122 PF01903 CbiX B34_00125 PF00689 Cation transporting ATPase, C-terminus B34_00125 PF00690 Cation transporter/ATPase, N-terminus B34_00126 PF08340 Domain of unknown function (DUF1732) B34_00126 PF03755 YicC-like family, N-terminal region B34_00127 PF04025 Domain of unknown function (DUF370) B34_00128 PF00625 Guanylate kinase B34_00129 PF01192 RNA polymerase Rpb6 B34_00130 PF04127 DNA / pantothenate metabolism flavoprotein B34_00130 PF02441 Flavoprotein B34_00131 PF04851 Type III restriction enzyme, res subunit B34_00131 PF18319 PriA DNA helicase Cys-rich region (CRR) domain B34_00131 PF17764 3′ DNA-binding domain (3′BD) B34_00131 PF18074 Primosomal protein N C-terminal domain B34_00131 PF00271 Helicase conserved C-terminal domain B34_00132 PF01327 Polypeptide deformylase B34_00133 PF00551 Formyl transferase B34_00133 PF02911 Formyl transferase, C-terminal domain B34_00134 PF01029 NusB family B34_00134 PF01189 16S rRNA methyltransferase RsmB/F B34_00135 PF04055 Radical SAM superfamily B34_00137 PF03793 PASTA domain B34_00137 PF00069 Protein kinase domain B34_00138 PF03193 RsgA GTPase B34_00138 PF16745 RsgA N-terminal domain B34_00139 PF00834 Ribulose-phosphate 3 epimerase family B34_00140 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain B34_00140 PF04263 Thiamin pyrophosphokinase, catalytic domain B34_00141 PF00830 Ribosomal L28 family B34_00142 PF03780 Asp23 family, cell envelope-related function B34_00143 PF13684 Dihydroxyacetone kinase family B34_00143 PF02734 DAK2 domain B34_00144 PF01842 ACT domain B34_00144 PF03315 Serine dehydratase beta chain B34_00145 PF03313 Serine dehydratase alpha chain B34_00146 PF17191 RecG wedge domain B34_00146 PF00271 Helicase conserved C-terminal domain B34_00146 PF00270 DEAD/DEAH box helicase B34_00147 PF08279 HTH domain B34_00147 PF03061 Thioesterase superfamily B34_00148 PF02504 Fatty acid synthesis protein B34_00149 PF00698 Acyl transferase domain B34_00151 PF00550 Phosphopantetheine attachment site B34_00152 PF14622 Ribonuclease-III-like B34_00152 PF00035 Double-stranded RNA binding motif B34_00153 PF02463 RecF/RecN/SMC N terminal domain B34_00153 PF06470 SMC proteins Flexible Hinge Domain B34_00154 PF00448 SRP54-type protein, GTPase domain B34_00154 PF02881 SRP54-type protein, helical bundle domain B34_00155 PF04297 Putative helix-turn-helix protein, YlxM / p13 like B34_00156 PF02881 SRP54-type protein, helical bundle domain B34_00156 PF00448 SRP54-type protein, GTPase domain B34_00156 PF02978 Signal peptide binding domain B34_00157 PF00886 Ribosomal protein S16 B34_00159 PF11068 YlqD protein B34_00160 PF05239 PRC-barrel domain B34_00160 PF01782 RimM N-terminal domain B34_00161 PF01746 tRNA (Guanine-1)-methyltransferase B34_00162 PF01245 Ribosomal protein L19 B34_00163 PF01926 50S ribosome-binding GTPase B34_00164 PF01351 Ribonuclease HII B34_00166 PF01312 FlhB HrpN YscU SpaS Family B34_00167 PF00549 CoA-ligase B34_00167 PF08442 ATP-grasp domain B34_00168 PF02629 CoA binding domain B34_00168 PF00549 CoA-ligase B34_00169 PF02481 DNA recombination-mediator protein A B34_00170 PF01751 Toprim domain B34_00170 PF01131 DNA topoisomerase B34_00170 PF01396 Topoisomerase DNA binding C4 zinc finger B34_00171 PF01134 Glucose inhibited division protein A B34_00172 PF00589 Phage integrase family B34_00172 PF02899 Phage integrase, N-terminal SAM-like domain B34_00173 PF00227 Proteasome subunit B34_00174 PF00004 ATPase family associated with various cellular activities (AAA) B34_00174 PF10431 C-terminal, D2-small domain, of ClpB protein B34_00174 PF07724 AAA domain (Cdc48 subfamily) B34_00175 PF08222 CodY helix-turn-helix domain B34_00175 PF06018 CodY GAF-like domain B34_00177 PF00460 Flagella basal body rod protein B34_00178 PF00460 Flagella basal body rod protein B34_00178 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B34_00179 PF02049 Flagellar hook-basal body complex protein FliE B34_00180 PF08345 Flagellar M-ring protein C-terminal B34_00180 PF01514 Secretory protein of YscJ/FliF family B34_00181 PF14842 FliG N-terminal domain B34_00181 PF14841 FliG middle domain B34_00181 PF01706 FliG C-terminal domain B34_00182 PF02108 Flagellar assembly protein FliH B34_00183 PF02874 ATP synthase alpha/beta family, beta-barrel domain B34_00183 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain B34_00183 PF18269 T3SS EscN ATPase C-terminal domain B34_00184 PF02050 Flagellar FliJ protein B34_00186 PF02120 Flagellar hook-length control protein FliK B34_00187 PF03963 Flagellar hook capping protein - N-terminal region B34_00188 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B34_00188 PF00460 Flagella basal body rod protein B34_00189 PF03748 Flagellar basal body-associated protein FliL B34_00190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term B34_00190 PF02154 Flagellar motor switch protein FliM B34_00191 PF04509 CheC-like family B34_00191 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term B34_00192 PF00072 Response regulator receiver domain B34_00193 PF04347 Flagellar biosynthesis protein, FliO B34_00194 PF00813 FliP family B34_00195 PF01313 Bacterial export proteins, family 3 B34_00196 PF01311 Bacterial export proteins, family 1 B34_00197 PF01312 FlhB HrpN YscU SpaS Family B34_00198 PF00771 FHIPEP family B34_00199 PF00448 SRP54-type protein, GTPase domain B34_00200 PF10609 NUBPL iron-transfer P-loop NTPase B34_00201 PF00072 Response regulator receiver domain B34_00201 PF01339 CheB methylesterase B34_00202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_00202 PF01627 Hpt domain B34_00202 PF07194 P2 response regulator binding domain B34_00202 PF01584 CheW-like domain B34_00202 PF02895 Signal transducing histidine kinase, homodimeric domain B34_00203 PF01584 CheW-like domain B34_00204 PF04509 CheC-like family B34_00205 PF03975 CheD chemotactic sensory transduction B34_00206 PF04542 Sigma-70 region 2 B34_00206 PF04539 Sigma-70 region 3 B34_00206 PF04545 Sigma-70, region 4 B34_00208 PF00318 Ribosomal protein S2 B34_00209 PF00889 Elongation factor TS B34_00210 PF00696 Amino acid kinase family B34_00211 PF01765 Ribosome recycling factor B34_00212 PF01255 Putative undecaprenyl diphosphate synthase B34_00214 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain B34_00214 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase B34_00214 PF13288 DXP reductoisomerase C-terminal domain B34_00215 PF02163 Peptidase family M50 B34_00215 PF17820 PDZ domain B34_00216 PF03129 Anticodon binding domain B34_00216 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) B34_00216 PF04073 Aminoacyl-tRNA editing domain B34_00217 PF07733 Bacterial DNA polymerase III alpha NTPase domain B34_00217 PF14480 DNA polymerase III polC-type N-terminus I B34_00217 PF02811 PHP domain B34_00217 PF17657 Bacterial DNA polymerase III alpha subunit finger domain B34_00217 PF11490 DNA polymerase III polC-type N-terminus II B34_00217 PF14579 Helix-hairpin-helix motif B34_00217 PF00929 Exonuclease B34_00218 PF00942 Cellulose binding domain B34_00218 PF00759 Glycosyl hydrolase family 9 B34_00219 PF00942 Cellulose binding domain B34_00219 PF00759 Glycosyl hydrolase family 9 B34_00220 PF00942 Cellulose binding domain B34_00220 PF02011 Glycosyl hydrolase family 48 B34_00220 PF00759 Glycosyl hydrolase family 9 B34_00221 PF00150 Cellulase (glycosyl hydrolase family 5) B34_00221 PF03442 Carbohydrate binding domain X2 B34_00221 PF18448 Carbohydrate binding domain B34_00223 PF02576 RimP N-terminal domain B34_00223 PF17384 RimP C-terminal SH3 domain B34_00224 PF13184 NusA-like KH domain B34_00224 PF08529 NusA N-terminal domain B34_00224 PF00575 S1 RNA binding domain B34_00225 PF04296 Protein of unknown function (DUF448) B34_00226 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family B34_00227 PF04760 Translation initiation factor IF-2, N-terminal region B34_00227 PF11987 Translation-initiation factor 2 B34_00227 PF00009 Elongation factor Tu GTP binding domain B34_00228 PF04456 Protein of unknown function (DUF503) B34_00229 PF02033 Ribosome-binding factor A B34_00230 PF16198 tRNA pseudouridylate synthase B C-terminal domain B34_00230 PF01509 TruB family pseudouridylate synthase (N terminal domain) B34_00231 PF06574 FAD synthetase B34_00231 PF01687 Riboflavin kinase B34_00232 PF00312 Ribosomal protein S15 B34_00233 PF03725 3' exoribonuclease family, domain 2 B34_00233 PF01138 3' exoribonuclease family, domain 1 B34_00233 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain B34_00233 PF00575 S1 RNA binding domain B34_00233 PF00013 KH domain B34_00234 PF01522 Polysaccharide deacetylase B34_00235 PF00675 Insulinase (Peptidase family M16) B34_00235 PF05193 Peptidase M16 inactive domain B34_00236 PF05239 PRC-barrel domain B34_00237 PF16924 Dipicolinate synthase subunit A N-terminal domain B34_00237 PF01262 Alanine dehydrogenase/PNT, C-terminal domain B34_00238 PF02441 Flavoprotein B34_00239 PF01118 Semialdehyde dehydrogenase, NAD binding domain B34_00239 PF02774 Semialdehyde dehydrogenase, dimerisation domain B34_00240 PF13840 ACT domain B34_00240 PF00696 Amino acid kinase family B34_00241 PF00701 Dihydrodipicolinate synthetase family B34_00242 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain B34_00242 PF17770 Ribonuclease J C-terminal domain B34_00242 PF00753 Metallo-beta-lactamase superfamily B34_00243 PF00574 Clp protease B34_00244 PF14035 YlzJ-like protein B34_00245 PF17854 FtsK alpha domain B34_00245 PF09397 Ftsk gamma domain B34_00245 PF01580 FtsK/SpoIIIE family B34_00246 PF07702 UTRA domain B34_00246 PF00392 Bacterial regulatory proteins, gntR family B34_00247 PF07690 Major Facilitator Superfamily B34_00248 PF05193 Peptidase M16 inactive domain B34_00249 PF05193 Peptidase M16 inactive domain B34_00249 PF00675 Insulinase (Peptidase family M16) B34_00251 PF11588 Protein of unknown function (DUF3243) B34_00252 PF11868 Protein of unknown function (DUF3388) B34_00253 PF13464 Domain of unknown function (DUF4115) B34_00254 PF01066 CDP-alcohol phosphatidyltransferase B34_00255 PF00994 Probable molybdopterin binding domain B34_00255 PF18146 Damage-inducible protein CinA KH domain B34_00255 PF02464 Competence-damaged protein B34_00256 PF00154 recA bacterial DNA recombination protein B34_00257 PF00013 KH domain B34_00257 PF01966 HD domain B34_00257 PF12072 Domain of unknown function (DUF3552) B34_00258 PF13277 YmdB-like protein B34_00259 PF04232 Stage V sporulation protein S (SpoVS) B34_00260 PF01244 Membrane dipeptidase (Peptidase family M19) B34_00261 PF00107 Zinc-binding dehydrogenase B34_00261 PF08240 Alcohol dehydrogenase GroES-like domain B34_00262 PF00155 Aminotransferase class I and II B34_00263 PF00919 Uncharacterized protein family UPF0004 B34_00263 PF01938 TRAM domain B34_00263 PF04055 Radical SAM superfamily B34_00264 PF06133 Control of competence regulator ComK, YlbF/YmcA B34_00265 PF10628 Outer spore coat protein E (CotE) B34_00266 PF00488 MutS domain V B34_00266 PF05188 MutS domain II B34_00266 PF01624 MutS domain I B34_00266 PF05190 MutS family domain IV B34_00266 PF05192 MutS domain III B34_00267 PF08676 MutL C terminal dimerisation domain B34_00267 PF01119 DNA mismatch repair protein, C-terminal domain B34_00268 PF03992 Antibiotic biosynthesis monooxygenase B34_00269 PF14449 Pre-toxin TG B34_00269 PF04740 LXG domain of WXG superfamily B34_00272 PF07683 Cobalamin synthesis protein cobW C-terminal domain B34_00272 PF02492 CobW/HypB/UreG, nucleotide-binding domain B34_00274 PF00583 Acetyltransferase (GNAT) family B34_00277 PF01593 Flavin containing amine oxidoreductase B34_00278 PF06912 Protein of unknown function (DUF1275) B34_00279 PF03471 Transporter associated domain B34_00279 PF02080 TrkA-C domain B34_00279 PF00999 Sodium/hydrogen exchanger family B34_00280 PF07690 Major Facilitator Superfamily B34_00281 PF07690 Major Facilitator Superfamily B34_00282 PF00561 alpha/beta hydrolase fold B34_00283 PF01906 Putative heavy-metal-binding B34_00284 PF09335 SNARE associated Golgi protein B34_00285 PF00144 Beta-lactamase B34_00285 PF11954 Domain of unknown function (DUF3471) B34_00286 PF04101 Glycosyltransferase family 28 C-terminal domain B34_00287 PF13520 Amino acid permease B34_00288 PF07875 Coat F domain B34_00290 PF01476 LysM domain B34_00290 PF00704 Glycosyl hydrolases family 18 B34_00291 PF00704 Glycosyl hydrolases family 18 B34_00291 PF01476 LysM domain B34_00292 PF00440 Bacterial regulatory proteins, tetR family B34_00293 PF12680 SnoaL-like domain B34_00294 PF01370 NAD dependent epimerase/dehydratase family B34_00296 PF02566 OsmC-like protein B34_00297 PF00893 Small Multidrug Resistance protein B34_00298 PF00893 Small Multidrug Resistance protein B34_00300 PF12788 YmaF family B34_00302 PF17209 Hfq protein B34_00304 PF07972 NrdI Flavodoxin like B34_00305 PF00317 Ribonucleotide reductase, all-alpha domain B34_00305 PF02867 Ribonucleotide reductase, barrel domain B34_00305 PF08343 Ribonucleotide reductase N-terminal B34_00306 PF00268 Ribonucleotide reductase, small chain B34_00308 PF00753 Metallo-beta-lactamase superfamily B34_00310 PF01592 NifU-like N terminal domain B34_00311 PF01475 Ferric uptake regulator family B34_00312 PF00392 Bacterial regulatory proteins, gntR family B34_00312 PF07729 FCD domain B34_00313 PF13536 Putative multidrug resistance efflux transporter B34_00314 PF01520 N-acetylmuramoyl-L-alanine amidase B34_00314 PF05036 Sporulation related domain B34_00319 PF00440 Bacterial regulatory proteins, tetR family B34_00322 PF01968 Hydantoinase/oxoprolinase B34_00322 PF05378 Hydantoinase/oxoprolinase N-terminal region B34_00324 PF02538 Hydantoinase B/oxoprolinase B34_00327 PF09346 SMI1 / KNR4 family (SUKH-1) B34_00328 PF04740 LXG domain of WXG superfamily B34_00328 PF14449 Pre-toxin TG B34_00332 PF00004 ATPase family associated with various cellular activities (AAA) B34_00332 PF17866 AAA lid domain B34_00334 PF00672 HAMP domain B34_00334 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_00334 PF02743 Cache domain B34_00335 PF18277 AbrB C-terminal domain B34_00335 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin B34_00336 PF00106 short chain dehydrogenase B34_00337 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH B34_00337 PF04740 LXG domain of WXG superfamily B34_00344 PF07690 Major Facilitator Superfamily B34_00345 PF18801 response regulator aspartate phosphatase H, N terminal B34_00350 PF01510 N-acetylmuramoyl-L-alanine amidase B34_00352 PF12708 Pectate lyase superfamily protein B34_00352 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain B34_00354 PF06605 Prophage endopeptidase tail B34_00355 PF05709 Phage tail protein B34_00356 PF01551 Peptidase family M23 B34_00356 PF01464 Transglycosylase SLT domain B34_00356 PF10145 Phage-related minor tail protein B34_00357 PF01551 Peptidase family M23 B34_00357 PF10145 Phage-related minor tail protein B34_00357 PF01464 Transglycosylase SLT domain B34_00371 PF13495 Phage integrase, N-terminal SAM-like domain B34_00371 PF00589 Phage integrase family B34_00390 PF03237 Terminase-like family B34_00394 PF09642 YonK protein B34_00397 PF00216 Bacterial DNA-binding protein B34_00401 PF10049 Protein of unknown function (DUF2283) B34_00403 PF00082 Subtilase family B34_00403 PF05922 Peptidase inhibitor I9 B34_00420 PF13443 Cro/C1-type HTH DNA-binding domain B34_00434 PF14163 Super-infection exclusion protein B B34_00444 PF00589 Phage integrase family B34_00444 PF02899 Phage integrase, N-terminal SAM-like domain B34_00445 PF14072 DNA-sulfur modification-associated B34_00450 PF14490 Helix-hairpin-helix containing domain B34_00450 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain B34_00450 PF13538 UvrD-like helicase C-terminal domain B34_00461 PF01068 ATP dependent DNA ligase domain B34_00466 PF09643 YopX protein B34_00479 PF03796 DnaB-like helicase C terminal domain B34_00481 PF01368 DHH family B34_00481 PF17768 RecJ OB domain B34_00482 PF02811 PHP domain B34_00482 PF17657 Bacterial DNA polymerase III alpha subunit finger domain B34_00482 PF07733 Bacterial DNA polymerase III alpha NTPase domain B34_00482 PF14579 Helix-hairpin-helix motif B34_00484 PF14579 Helix-hairpin-helix motif B34_00484 PF17657 Bacterial DNA polymerase III alpha subunit finger domain B34_00484 PF07733 Bacterial DNA polymerase III alpha NTPase domain B34_00484 PF02811 PHP domain B34_00486 PF14579 Helix-hairpin-helix motif B34_00486 PF17657 Bacterial DNA polymerase III alpha subunit finger domain B34_00486 PF07733 Bacterial DNA polymerase III alpha NTPase domain B34_00486 PF02811 PHP domain B34_00487 PF06725 3D domain B34_00501 PF07972 NrdI Flavodoxin like B34_00502 PF02867 Ribonucleotide reductase, barrel domain B34_00502 PF00317 Ribonucleotide reductase, all-alpha domain B34_00502 PF08343 Ribonucleotide reductase N-terminal B34_00503 PF14528 LAGLIDADG-like domain B34_00503 PF02867 Ribonucleotide reductase, barrel domain B34_00503 PF00317 Ribonucleotide reductase, all-alpha domain B34_00503 PF08343 Ribonucleotide reductase N-terminal B34_00506 PF00268 Ribonucleotide reductase, small chain B34_00508 PF00085 Thioredoxin B34_00512 PF00692 dUTPase B34_00520 PF00303 Thymidylate synthase B34_00524 PF00149 Calcineurin-like phosphoesterase B34_00529 PF08719 Domain of unknown function (DUF1768) B34_00534 PF00004 ATPase family associated with various cellular activities (AAA) B34_00534 PF17866 AAA lid domain B34_00535 PF13167 GTP-binding GTPase N-terminal B34_00535 PF01926 50S ribosome-binding GTPase B34_00535 PF16360 GTP-binding GTPase Middle Region B34_00536 PF06838 Methionine gamma-lyase B34_00537 PF13411 MerR HTH family regulatory protein B34_00538 PF00120 Glutamine synthetase, catalytic domain B34_00538 PF03951 Glutamine synthetase, beta-Grasp domain B34_00550 PF16302 Domain of unknown function (DUF4944) B34_00555 PF17934 Tetracyclin repressor-like, C-terminal domain B34_00555 PF00440 Bacterial regulatory proteins, tetR family B34_00556 PF00893 Small Multidrug Resistance protein B34_00557 PF00893 Small Multidrug Resistance protein B34_00558 PF13302 Acetyltransferase (GNAT) domain B34_00559 PF13302 Acetyltransferase (GNAT) domain B34_00562 PF08534 Redoxin B34_00563 PF05067 Manganese containing catalase B34_00567 PF00440 Bacterial regulatory proteins, tetR family B34_00567 PF08360 QacR-like protein, C-terminal region B34_00568 PF01047 MarR family B34_00569 PF00881 Nitroreductase family B34_00570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_00571 PF01613 Flavin reductase like domain B34_00572 PF03358 NADPH-dependent FMN reductase B34_00575 PF00303 Thymidylate synthase B34_00576 PF14040 Deoxyribonuclease NucA/NucB B34_00577 PF01726 LexA DNA binding domain B34_00577 PF00717 Peptidase S24-like B34_00578 PF01476 LysM domain B34_00579 PF00239 Resolvase, N terminal domain B34_00580 PF05979 Bacterial protein of unknown function (DUF896) B34_00581 PF00456 Transketolase, thiamine diphosphate binding domain B34_00581 PF02780 Transketolase, C-terminal domain B34_00581 PF02779 Transketolase, pyrimidine binding domain B34_00582 PF10747 Sporulation inhibitor of replication protein SirA B34_00583 PF03672 Uncharacterised protein family (UPF0154) B34_00584 PF09388 Spo0E like sporulation regulatory protein B34_00585 PF02683 Cytochrome C biogenesis protein transmembrane region B34_00586 PF00072 Response regulator receiver domain B34_00587 PF07301 Protein of unknown function (DUF1453) B34_00588 PF11084 Protein of unknown function (DUF2621) B34_00590 PF00330 Aconitase family (aconitate hydratase) B34_00590 PF00694 Aconitase C-terminal domain B34_00591 PF00578 AhpC/TSA family B34_00592 PF13040 Fur-regulated basic protein B B34_00593 PF08177 Small acid-soluble spore protein N family B34_00595 PF03061 Thioesterase superfamily B34_00599 PF01521 Iron-sulphur cluster biosynthesis B34_00600 PF02660 Glycerol-3-phosphate acyltransferase B34_00601 PF13380 CoA binding domain B34_00602 PF00986 DNA gyrase B subunit, carboxyl terminus B34_00602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_00602 PF00204 DNA gyrase B B34_00602 PF01751 Toprim domain B34_00603 PF03989 DNA gyrase C-terminal domain, beta-propeller B34_00603 PF00521 DNA gyrase/topoisomerase IV, subunit A B34_00604 PF00392 Bacterial regulatory proteins, gntR family B34_00606 PF00596 Class II Aldolase and Adducin N-terminal domain B34_00607 PF02610 L-arabinose isomerase B34_00607 PF11762 L-arabinose isomerase C-terminal domain B34_00608 PF00083 Sugar (and other) transporter B34_00609 PF00106 short chain dehydrogenase B34_00612 PF01235 Sodium:alanine symporter family B34_00614 PF02665 Nitrate reductase gamma subunit B34_00615 PF02613 Nitrate reductase delta subunit B34_00616 PF14711 Respiratory nitrate reductase beta C-terminal B34_00616 PF13247 4Fe-4S dicluster domain B34_00617 PF00384 Molybdopterin oxidoreductase B34_00617 PF01568 Molydopterin dinucleotide binding domain B34_00617 PF14710 Respiratory nitrate reductase alpha N-terminal B34_00620 PF04055 Radical SAM superfamily B34_00620 PF06463 Molybdenum Cofactor Synthesis C B34_00622 PF14256 YwiC-like protein B34_00623 PF00325 Bacterial regulatory proteins, crp family B34_00623 PF00027 Cyclic nucleotide-binding domain B34_00624 PF07690 Major Facilitator Superfamily B34_00626 PF00027 Cyclic nucleotide-binding domain B34_00626 PF13545 Crp-like helix-turn-helix domain B34_00627 PF00115 Cytochrome C and Quinol oxidase polypeptide I B34_00628 PF04405 Domain of Unknown function (DUF542) B34_00628 PF01814 Hemerythrin HHE cation binding domain B34_00629 PF07098 Protein of unknown function (DUF1360) B34_00630 PF00150 Cellulase (glycosyl hydrolase family 5) B34_00630 PF00942 Cellulose binding domain B34_00631 PF17452 Uncharacterized YnfE-like B34_00632 PF13302 Acetyltransferase (GNAT) domain B34_00634 PF07690 Major Facilitator Superfamily B34_00635 PF13229 Right handed beta helix region B34_00636 PF05525 Branched-chain amino acid transport protein B34_00637 PF00107 Zinc-binding dehydrogenase B34_00637 PF08240 Alcohol dehydrogenase GroES-like domain B34_00638 PF13411 MerR HTH family regulatory protein B34_00640 PF12706 Beta-lactamase superfamily domain B34_00643 PF00378 Enoyl-CoA hydratase/isomerase B34_00644 PF00171 Aldehyde dehydrogenase family B34_00645 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase B34_00645 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase B34_00646 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B34_00646 PF02770 Acyl-CoA dehydrogenase, middle domain B34_00646 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B34_00647 PF01238 Phosphomannose isomerase type I B34_00648 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_00648 PF02378 Phosphotransferase system, EIIC B34_00648 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_00652 PF00874 PRD domain B34_00652 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_00652 PF08279 HTH domain B34_00652 PF05043 Mga helix-turn-helix domain B34_00654 PF00005 ABC transporter B34_00655 PF00392 Bacterial regulatory proteins, gntR family B34_00656 PF00106 short chain dehydrogenase B34_00657 PF03786 D-mannonate dehydratase (UxuA) B34_00658 PF16338 Domain of unknown function (DUF4968) B34_00658 PF13802 Galactose mutarotase-like B34_00658 PF17137 Domain of unknown function (DUF5110) B34_00658 PF01055 Glycosyl hydrolases family 31 B34_00659 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component B34_00660 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component B34_00661 PF03480 Bacterial extracellular solute-binding protein, family 7 B34_00662 PF00356 Bacterial regulatory proteins, lacI family B34_00663 PF01451 Low molecular weight phosphotyrosine protein phosphatase B34_00664 PF02040 Arsenical pump membrane protein B34_00665 PF01022 Bacterial regulatory protein, arsR family B34_00666 PF08818 Domain of unknown function (DU1801) B34_00668 PF06800 Sugar transport protein B34_00669 PF02638 Glycosyl hydrolase-like 10 B34_00672 PF04055 Radical SAM superfamily B34_00673 PF01228 Glycine radical B34_00673 PF02901 Pyruvate formate lyase-like B34_00674 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family B34_00675 PF04239 Protein of unknown function (DUF421) B34_00676 PF13091 PLD-like domain B34_00676 PF13396 Phospholipase_D-nuclease N-terminal B34_00678 PF04239 Protein of unknown function (DUF421) B34_00680 PF03862 SpoVAC/SpoVAEB sporulation membrane protein B34_00681 PF07451 Stage V sporulation protein AD (SpoVAD) B34_00682 PF03862 SpoVAC/SpoVAEB sporulation membrane protein B34_00685 PF05067 Manganese containing catalase B34_00688 PF03323 Bacillus/Clostridium GerA spore germination protein B34_00689 PF05036 Sporulation related domain B34_00689 PF01520 N-acetylmuramoyl-L-alanine amidase B34_00691 PF01526 Tn3 transposase DDE domain B34_00691 PF13700 Domain of unknown function (DUF4158) B34_00693 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_00694 PF07849 Protein of unknown function (DUF1641) B34_00696 PF12728 Helix-turn-helix domain B34_00698 PF00501 AMP-binding enzyme B34_00698 PF16177 Acetyl-coenzyme A synthetase N-terminus B34_00698 PF13193 AMP-binding enzyme C-terminal domain B34_00699 PF01039 Carboxyl transferase domain B34_00700 PF00378 Enoyl-CoA hydratase/isomerase B34_00701 PF00682 HMGL-like B34_00702 PF00364 Biotin-requiring enzyme B34_00703 PF00289 Biotin carboxylase, N-terminal domain B34_00703 PF02785 Biotin carboxylase C-terminal domain B34_00703 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B34_00704 PF13193 AMP-binding enzyme C-terminal domain B34_00704 PF00501 AMP-binding enzyme B34_00705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B34_00705 PF02770 Acyl-CoA dehydrogenase, middle domain B34_00705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B34_00706 PF02525 Flavodoxin-like fold B34_00707 PF01638 HxlR-like helix-turn-helix B34_00708 PF00171 Aldehyde dehydrogenase family B34_00709 PF01472 PUA domain B34_00709 PF00696 Amino acid kinase family B34_00710 PF14748 Pyrroline-5-carboxylate reductase dimerisation B34_00710 PF03807 NADP oxidoreductase coenzyme F420-dependent B34_00712 PF04239 Protein of unknown function (DUF421) B34_00713 PF01384 Phosphate transporter family B34_00714 PF01507 Phosphoadenosine phosphosulfate reductase family B34_00715 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) B34_00716 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 B34_00717 PF13378 Enolase C-terminal domain-like B34_00717 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain B34_00718 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain B34_00718 PF13378 Enolase C-terminal domain-like B34_00719 PF07690 Major Facilitator Superfamily B34_00720 PF00535 Glycosyl transferase family 2 B34_00723 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_00723 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster B34_00724 PF00310 Glutamine amidotransferases class-II B34_00724 PF04898 Glutamate synthase central domain B34_00724 PF01645 Conserved region in glutamate synthase B34_00724 PF01493 GXGXG motif B34_00725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_00725 PF03466 LysR substrate binding domain B34_00729 PF01047 MarR family B34_00730 PF00005 ABC transporter B34_00730 PF00664 ABC transporter transmembrane region B34_00731 PF00664 ABC transporter transmembrane region B34_00731 PF00005 ABC transporter B34_00732 PF00067 Cytochrome P450 B34_00733 PF00106 short chain dehydrogenase B34_00734 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain B34_00734 PF00391 PEP-utilising enzyme, mobile domain B34_00735 PF07690 Major Facilitator Superfamily B34_00736 PF00384 Molybdopterin oxidoreductase B34_00736 PF01568 Molydopterin dinucleotide binding domain B34_00736 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B34_00737 PF01047 MarR family B34_00738 PF07690 Major Facilitator Superfamily B34_00739 PF03845 Spore germination protein B34_00740 PF05504 Spore germination B3/ GerAC like, C-terminal B34_00741 PF03845 Spore germination protein B34_00742 PF03845 Spore germination protein B34_00743 PF03323 Bacillus/Clostridium GerA spore germination protein B34_00745 PF02743 Cache domain B34_00745 PF00672 HAMP domain B34_00745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_00746 PF01588 Putative tRNA binding domain B34_00747 PF00082 Subtilase family B34_00749 PF17932 Tetracyclin repressor-like, C-terminal domain B34_00749 PF00440 Bacterial regulatory proteins, tetR family B34_00750 PF01047 MarR family B34_00751 PF01966 HD domain B34_00753 PF14158 YndJ-like protein B34_00754 PF13761 Domain of unknown function (DUF4166) B34_00756 PF00440 Bacterial regulatory proteins, tetR family B34_00756 PF13305 Tetracyclin repressor-like, C-terminal domain B34_00757 PF00753 Metallo-beta-lactamase superfamily B34_00758 PF06445 GyrI-like small molecule binding domain B34_00760 PF13280 WYL domain B34_00760 PF08279 HTH domain B34_00762 PF01022 Bacterial regulatory protein, arsR family B34_00765 PF00324 Amino acid permease B34_00767 PF02719 Polysaccharide biosynthesis protein B34_00770 PF00534 Glycosyl transferases group 1 B34_00771 PF00665 Integrase core domain B34_00771 PF13276 HTH-like domain B34_00771 PF13333 Integrase core domain B34_00773 PF04238 Protein of unknown function (DUF420) B34_00776 PF00474 Sodium:solute symporter family B34_00777 PF01476 LysM domain B34_00777 PF06725 3D domain B34_00778 PF00570 HRDC domain B34_00778 PF00271 Helicase conserved C-terminal domain B34_00778 PF00270 DEAD/DEAH box helicase B34_00778 PF16124 RecQ zinc-binding B34_00778 PF09382 RQC domain B34_00783 PF04237 YjbR B34_00786 PF07849 Protein of unknown function (DUF1641) B34_00787 PF00384 Molybdopterin oxidoreductase B34_00787 PF01568 Molydopterin dinucleotide binding domain B34_00787 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B34_00787 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B34_00787 PF12838 4Fe-4S dicluster domain B34_00790 PF12945 Flagellar protein YcgR B34_00790 PF07238 PilZ domain B34_00796 PF13217 Protein of unknown function (DUF4025) B34_00797 PF05504 Spore germination B3/ GerAC like, C-terminal B34_00800 PF01979 Amidohydrolase family B34_00801 PF11122 Inner spore coat protein D B34_00803 PF08386 TAP-like protein B34_00803 PF00561 alpha/beta hydrolase fold B34_00805 PF11122 Inner spore coat protein D B34_00806 PF01810 LysE type translocator B34_00807 PF00253 Ribosomal protein S14p/S29e B34_00808 PF13344 Haloacid dehalogenase-like hydrolase B34_00808 PF00293 NUDIX domain B34_00809 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain B34_00809 PF00391 PEP-utilising enzyme, mobile domain B34_00810 PF00440 Bacterial regulatory proteins, tetR family B34_00812 PF10710 Protein of unknown function (DUF2512) B34_00813 PF05163 DinB family B34_00814 PF02525 Flavodoxin-like fold B34_00815 PF01258 Prokaryotic dksA/traR C4-type zinc finger B34_00816 PF08000 Bacterial PH domain B34_00818 PF00171 Aldehyde dehydrogenase family B34_00819 PF07690 Major Facilitator Superfamily B34_00820 PF01636 Phosphotransferase enzyme family B34_00822 PF13243 Squalene-hopene cyclase C-terminal domain B34_00822 PF13249 Squalene-hopene cyclase N-terminal domain B34_00823 PF13243 Squalene-hopene cyclase C-terminal domain B34_00823 PF13249 Squalene-hopene cyclase N-terminal domain B34_00824 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain B34_00824 PF02777 Iron/manganese superoxide dismutases, C-terminal domain B34_00826 PF00209 Sodium:neurotransmitter symporter family B34_00827 PF01758 Sodium Bile acid symporter family B34_00828 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) B34_00828 PF02817 e3 binding domain B34_00828 PF00364 Biotin-requiring enzyme B34_00829 PF02779 Transketolase, pyrimidine binding domain B34_00829 PF16870 2-oxoglutarate dehydrogenase C-terminal B34_00829 PF00676 Dehydrogenase E1 component B34_00830 PF00092 von Willebrand factor type A domain B34_00831 PF07728 AAA domain (dynein-related subfamily) B34_00832 PF13627 Prokaryotic lipoprotein-attachment site B34_00832 PF00080 Copper/zinc superoxide dismutase (SODC) B34_00833 PF01476 LysM domain B34_00833 PF00877 NlpC/P60 family B34_00834 PF01554 MatE B34_00835 PF02585 GlcNAc-PI de-N-acetylase B34_00836 PF08830 Protein of unknown function (DUF1806) B34_00838 PF00892 EamA-like transporter family B34_00841 PF03330 Lytic transglycolase B34_00844 PF01638 HxlR-like helix-turn-helix B34_00845 PF00881 Nitroreductase family B34_00846 PF01738 Dienelactone hydrolase family B34_00847 PF11755 Protein of unknown function (DUF3311) B34_00848 PF00474 Sodium:solute symporter family B34_00849 PF17820 PDZ domain B34_00849 PF01471 Putative peptidoglycan binding domain B34_00849 PF03572 Peptidase family S41 B34_00850 PF08241 Methyltransferase domain B34_00852 PF02557 D-alanyl-D-alanine carboxypeptidase B34_00853 PF01048 Phosphorylase superfamily B34_00854 PF03773 Predicted permease B34_00857 PF14191 YodL-like B34_00858 PF01569 PAP2 superfamily B34_00859 PF14162 YozD-like protein B34_00862 PF06855 YozE SAM-like fold B34_00863 PF14122 YokU-like protein, putative antitoxin B34_00864 PF12544 Lysine-2,3-aminomutase B34_00865 PF00583 Acetyltransferase (GNAT) family B34_00866 PF01546 Peptidase family M20/M25/M40 B34_00866 PF07687 Peptidase dimerisation domain B34_00867 PF01144 Coenzyme A transferase B34_00868 PF01144 Coenzyme A transferase B34_00869 PF00202 Aminotransferase class-III B34_00871 PF00583 Acetyltransferase (GNAT) family B34_00872 PF01641 SelR domain B34_00873 PF01625 Peptide methionine sulfoxide reductase B34_00874 PF01047 MarR family B34_00876 PF07694 5TMR of 5TMR-LYT B34_00876 PF00990 Diguanylate cyclase, GGDEF domain B34_00877 PF01554 MatE B34_00879 PF17431 Uncharacterized YmpT-like B34_00880 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) B34_00881 PF13472 GDSL-like Lipase/Acylhydrolase family B34_00882 PF02630 SCO1/SenC B34_00883 PF02645 Uncharacterised protein, DegV family COG1307 B34_00884 PF10751 Protein of unknown function (DUF2535) B34_00885 PF00291 Pyridoxal-phosphate dependent enzyme B34_00885 PF00585 C-terminal regulatory domain of Threonine dehydratase B34_00886 PF08461 Ribonuclease R winged-helix domain B34_00886 PF00158 Sigma-54 interaction domain B34_00887 PF03006 Haemolysin-III related B34_00889 PF00186 Dihydrofolate reductase B34_00890 PF04608 Phosphatidylglycerophosphatase A B34_00891 PF14005 YpjP-like protein B34_00893 PF04445 Putative SAM-dependent methyltransferase B34_00894 PF06491 Disulphide isomerase B34_00895 PF00920 Dehydratase family B34_00896 PF13769 Virulence factor B34_00896 PF08712 Scaffold protein Nfu/NifU N terminal B34_00897 PF01966 HD domain B34_00898 PF00255 Glutathione peroxidase B34_00899 PF01268 Formate--tetrahydrofolate ligase B34_00900 PF04204 Homoserine O-succinyltransferase B34_00901 PF00534 Glycosyl transferases group 1 B34_00901 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase B34_00903 PF00313 'Cold-shock' DNA-binding domain B34_00905 PF10819 Protein of unknown function (DUF2564) B34_00906 PF10782 Zinc-finger B34_00907 PF13456 Reverse transcriptase-like B34_00908 PF02592 Putative vitamin uptake transporter B34_00909 PF13456 Reverse transcriptase-like B34_00910 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain B34_00910 PF01367 5'-3' exonuclease, C-terminal SAM fold B34_00912 PF10752 Protein of unknown function (DUF2533) B34_00913 PF00350 Dynamin family B34_00914 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family B34_00915 PF00195 Chalcone and stilbene synthases, N-terminal domain B34_00915 PF02797 Chalcone and stilbene synthases, C-terminal domain B34_00916 PF00583 Acetyltransferase (GNAT) family B34_00917 PF00860 Permease family B34_00918 PF00156 Phosphoribosyl transferase domain B34_00919 PF02074 Carboxypeptidase Taq (M32) metallopeptidase B34_00920 PF13307 Helicase C-terminal domain B34_00923 PF02926 THUMP domain B34_00923 PF01170 Putative RNA methylase family UPF0020 B34_00924 PF05103 DivIVA protein B34_00925 PF06908 YspA SLOG family B34_00926 PF11122 Inner spore coat protein D B34_00928 PF13482 RNase_H superfamily B34_00929 PF00270 DEAD/DEAH box helicase B34_00929 PF00271 Helicase conserved C-terminal domain B34_00929 PF09369 Domain of unknown function (DUF1998) B34_00930 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B34_00932 PF14179 YppG-like protein B34_00933 PF14178 YppF-like protein B34_00934 PF08807 Bacterial domain of unknown function (DUF1798) B34_00936 PF10720 Protein of unknown function (DUF2515) B34_00937 PF03838 Recombination protein U B34_00938 PF00905 Penicillin binding protein transpeptidase domain B34_00938 PF00912 Transglycosylase B34_00940 PF00730 HhH-GPD superfamily base excision DNA repair protein B34_00940 PF10576 Iron-sulfur binding domain of endonuclease III B34_00940 PF00633 Helix-hairpin-helix motif B34_00941 PF07261 Replication initiation and membrane attachment B34_00942 PF00152 tRNA synthetases class II (D, K and N) B34_00942 PF01336 OB-fold nucleic acid binding domain B34_00943 PF00155 Aminotransferase class I and II B34_00944 PF03413 Peptidase propeptide and YPEB domain B34_00944 PF17881 Domain of unknown function (DUF5590) B34_00945 PF14084 Protein of unknown function (DUF4264) B34_00946 PF13307 Helicase C-terminal domain B34_00946 PF04851 Type III restriction enzyme, res subunit B34_00946 PF00929 Exonuclease B34_00947 PF02261 Aspartate decarboxylase B34_00948 PF02569 Pantoate-beta-alanine ligase B34_00949 PF02548 Ketopantoate hydroxymethyltransferase B34_00950 PF08279 HTH domain B34_00950 PF03099 Biotin/lipoate A/B protein ligase family B34_00950 PF02237 Biotin protein ligase C terminal domain B34_00951 PF01743 Poly A polymerase head domain B34_00951 PF12627 Probable RNA and SrmB- binding site of polymerase A B34_00951 PF13735 tRNA nucleotidyltransferase domain 2 putative B34_00952 PF13439 Glycosyltransferase Family 4 B34_00952 PF00534 Glycosyl transferases group 1 B34_00953 PF02585 GlcNAc-PI de-N-acetylase B34_00954 PF02142 MGS-like domain B34_00955 PF05173 Dihydrodipicolinate reductase, C-terminus B34_00955 PF01113 Dihydrodipicolinate reductase, N-terminus B34_00956 PF03819 MazG nucleotide pyrophosphohydrolase domain B34_00957 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 B34_00957 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) B34_00958 PF09577 Sporulation protein YpjB (SpoYpjB) B34_00959 PF07187 Protein of unknown function (DUF1405) B34_00960 PF00032 Cytochrome b(C-terminal)/b6/petD B34_00960 PF13442 Cytochrome C oxidase, cbb3-type, subunit III B34_00961 PF00033 Cytochrome b/b6/petB B34_00962 PF00355 Rieske [2Fe-2S] domain B34_00963 PF10673 Protein of unknown function (DUF2487) B34_00964 PF08858 IDEAL domain B34_00964 PF08864 UPF0302 domain B34_00966 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B34_00967 PF02153 Prephenate dehydrogenase B34_00967 PF01842 ACT domain B34_00968 PF00155 Aminotransferase class I and II B34_00969 PF00290 Tryptophan synthase alpha chain B34_00970 PF00291 Pyridoxal-phosphate dependent enzyme B34_00971 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase B34_00972 PF00218 Indole-3-glycerol phosphate synthase B34_00973 PF02885 Glycosyl transferase family, helical bundle domain B34_00973 PF00591 Glycosyl transferase family, a/b domain B34_00974 PF00425 chorismate binding enzyme B34_00974 PF04715 Anthranilate synthase component I, N terminal region B34_00975 PF07736 Chorismate mutase type I B34_00976 PF01761 3-dehydroquinate synthase B34_00977 PF01264 Chorismate synthase B34_00978 PF03705 CheR methyltransferase, all-alpha domain B34_00978 PF01739 CheR methyltransferase, SAM binding domain B34_00979 PF00334 Nucleoside diphosphate kinase B34_00980 PF00348 Polyprenyl synthetase B34_00981 PF01209 ubiE/COQ5 methyltransferase family B34_00982 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 B34_00983 PF02081 Tryptophan RNA-binding attenuator protein B34_00984 PF01227 GTP cyclohydrolase I B34_00985 PF00216 Bacterial DNA-binding protein B34_00986 PF09547 Stage IV sporulation protein A (spore_IV_A) B34_00988 PF10966 Protein of unknown function (DUF2768) B34_00990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus B34_00990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus B34_00991 PF01926 50S ribosome-binding GTPase B34_00991 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal B34_00993 PF14045 YIEGIA protein B34_00995 PF14140 YpzI-like protein B34_00996 PF01070 FMN-dependent dehydrogenase B34_00997 PF00575 S1 RNA binding domain B34_00998 PF02224 Cytidylate kinase B34_00999 PF17313 Family of unknown function (DUF5359) B34_01000 PF03413 Peptidase propeptide and YPEB domain B34_01000 PF14620 YpeB sporulation B34_01001 PF01471 Putative peptidoglycan binding domain B34_01001 PF07486 Cell Wall Hydrolase B34_01002 PF13367 PrsW family intramembrane metalloprotease B34_01003 PF00710 Asparaginase, N-terminal B34_01003 PF17763 Glutaminase/Asparaginase C-terminal domain B34_01005 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain B34_01005 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B34_01006 PF05389 Negative regulator of genetic competence (MecA) B34_01007 PF00149 Calcineurin-like phosphoesterase B34_01008 PF10864 Protein of unknown function (DUF2663) B34_01009 PF01476 LysM domain B34_01010 PF02517 CPBP intramembrane metalloprotease B34_01011 PF00270 DEAD/DEAH box helicase B34_01011 PF00271 Helicase conserved C-terminal domain B34_01012 PF14493 Helix-turn-helix domain B34_01014 PF12822 ECF transporter, substrate-specific component B34_01015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B34_01015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B34_01015 PF01842 ACT domain B34_01016 PF04225 Opacity-associated protein A LysM-like domain B34_01016 PF01551 Peptidase family M23 B34_01018 PF04542 Sigma-70 region 2 B34_01018 PF08281 Sigma-70, region 4 B34_01019 PF03816 Cell envelope-related transcriptional attenuator domain B34_01020 PF01522 Polysaccharide deacetylase B34_01022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_01022 PF00512 His Kinase A (phospho-acceptor) domain B34_01023 PF00486 Transcriptional regulatory protein, C terminal B34_01023 PF00072 Response regulator receiver domain B34_01024 PF00989 PAS fold B34_01024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_01024 PF18698 Histidine kinase sensor domain B34_01024 PF00512 His Kinase A (phospho-acceptor) domain B34_01024 PF00672 HAMP domain B34_01025 PF00486 Transcriptional regulatory protein, C terminal B34_01025 PF00072 Response regulator receiver domain B34_01026 PF01578 Cytochrome C assembly protein B34_01027 PF05140 ResB-like family B34_01028 PF00578 AhpC/TSA family B34_01029 PF00849 RNA pseudouridylate synthase B34_01029 PF01479 S4 domain B34_01030 PF07670 Nucleoside recognition B34_01031 PF07670 Nucleoside recognition B34_01032 PF00768 D-alanyl-D-alanine carboxypeptidase B34_01032 PF07943 Penicillin-binding protein 5, C-terminal domain B34_01033 PF13047 Protein of unknown function (DUF3907) B34_01034 PF04079 Segregation and condensation complex subunit ScpB B34_01035 PF02616 Segregation and condensation protein ScpA B34_01037 PF03745 Domain of unknown function (DUF309) B34_01038 PF00583 Acetyltransferase (GNAT) family B34_01039 PF00885 6,7-dimethyl-8-ribityllumazine synthase B34_01040 PF00925 GTP cyclohydrolase II B34_01040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase B34_01041 PF00677 Lumazine binding domain B34_01042 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region B34_01042 PF01872 RibD C-terminal domain B34_01044 PF00149 Calcineurin-like phosphoesterase B34_01045 PF00011 Hsp20/alpha crystallin family B34_01047 PF18801 response regulator aspartate phosphatase H, N terminal B34_01048 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD B34_01049 PF06207 Protein of unknown function (DUF1002) B34_01050 PF05908 Poly-gamma-glutamate hydrolase B34_01051 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain B34_01051 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain B34_01053 PF03323 Bacillus/Clostridium GerA spore germination protein B34_01054 PF14097 Stage V sporulation protein AE1 B34_01055 PF03862 SpoVAC/SpoVAEB sporulation membrane protein B34_01056 PF07451 Stage V sporulation protein AD (SpoVAD) B34_01057 PF03862 SpoVAC/SpoVAEB sporulation membrane protein B34_01058 PF13782 Stage V sporulation protein AB B34_01059 PF12164 Stage V sporulation protein AA B34_01060 PF04545 Sigma-70, region 4 B34_01060 PF04542 Sigma-70 region 2 B34_01060 PF04539 Sigma-70 region 3 B34_01061 PF13581 Histidine kinase-like ATPase domain B34_01062 PF01740 STAS domain B34_01063 PF07943 Penicillin-binding protein 5, C-terminal domain B34_01063 PF00768 D-alanyl-D-alanine carboxypeptidase B34_01064 PF01048 Phosphorylase superfamily B34_01065 PF01676 Metalloenzyme superfamily B34_01066 PF02899 Phage integrase, N-terminal SAM-like domain B34_01066 PF00589 Phage integrase family B34_01067 PF14004 Protein of unknown function (DUF4227) B34_01068 PF01475 Ferric uptake regulator family B34_01069 PF01944 Stage II sporulation protein M B34_01070 PF02378 Phosphotransferase system, EIIC B34_01071 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_01072 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin B34_01073 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin B34_01076 PF13673 Acetyltransferase (GNAT) domain B34_01078 PF00293 NUDIX domain B34_01079 PF13072 Mother cell inhibitor of FtsZ B34_01080 PF00440 Bacterial regulatory proteins, tetR family B34_01081 PF13564 DoxX-like family B34_01082 PF00248 Aldo/keto reductase family B34_01084 PF12146 Serine aminopeptidase, S33 B34_01085 PF10827 Protein of unknown function (DUF2552) B34_01086 PF01521 Iron-sulphur cluster biosynthesis B34_01088 PF04229 GrpB protein B34_01088 PF13673 Acetyltransferase (GNAT) domain B34_01089 PF03992 Antibiotic biosynthesis monooxygenase B34_01090 PF01674 Lipase (class 2) B34_01092 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B34_01093 PF00528 Binding-protein-dependent transport system inner membrane component B34_01094 PF00528 Binding-protein-dependent transport system inner membrane component B34_01095 PF00005 ABC transporter B34_01096 PF01554 MatE B34_01099 PF08863 YolD-like protein B34_01100 PF11799 impB/mucB/samB family C-terminal domain B34_01100 PF00817 impB/mucB/samB family B34_01100 PF11798 IMS family HHH motif B34_01101 PF14164 YqzH-like protein B34_01102 PF07690 Major Facilitator Superfamily B34_01104 PF00485 Phosphoribulokinase / Uridine kinase family B34_01106 PF00005 ABC transporter B34_01110 PF05908 Poly-gamma-glutamate hydrolase B34_01111 PF00106 short chain dehydrogenase B34_01112 PF00753 Metallo-beta-lactamase superfamily B34_01113 PF03807 NADP oxidoreductase coenzyme F420-dependent B34_01113 PF14748 Pyrroline-5-carboxylate reductase dimerisation B34_01114 PF01546 Peptidase family M20/M25/M40 B34_01115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family B34_01116 PF12146 Serine aminopeptidase, S33 B34_01117 PF00471 Ribosomal protein L33 B34_01118 PF00753 Metallo-beta-lactamase superfamily B34_01118 PF12706 Beta-lactamase superfamily domain B34_01119 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain B34_01119 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain B34_01122 PF16868 NMT1-like family B34_01123 PF00392 Bacterial regulatory proteins, gntR family B34_01123 PF07702 UTRA domain B34_01124 PF00232 Glycosyl hydrolase family 1 B34_01125 PF02378 Phosphotransferase system, EIIC B34_01126 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit B34_01127 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_01129 PF00245 Alkaline phosphatase B34_01131 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase B34_01131 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain B34_01132 PF11799 impB/mucB/samB family C-terminal domain B34_01132 PF11798 IMS family HHH motif B34_01132 PF00817 impB/mucB/samB family B34_01134 PF02096 60Kd inner membrane protein B34_01135 PF07687 Peptidase dimerisation domain B34_01135 PF01546 Peptidase family M20/M25/M40 B34_01136 PF01039 Carboxyl transferase domain B34_01137 PF06081 Aromatic acid exporter family member 1 B34_01137 PF11728 Putative aromatic acid exporter C-terminal domain B34_01138 PF00005 ABC transporter B34_01139 PF00528 Binding-protein-dependent transport system inner membrane component B34_01140 PF00497 Bacterial extracellular solute-binding proteins, family 3 B34_01142 PF06491 Disulphide isomerase B34_01143 PF00781 Diacylglycerol kinase catalytic domain B34_01144 PF02817 e3 binding domain B34_01144 PF00364 Biotin-requiring enzyme B34_01144 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) B34_01145 PF02780 Transketolase, C-terminal domain B34_01145 PF02779 Transketolase, pyrimidine binding domain B34_01146 PF00676 Dehydrogenase E1 component B34_01147 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B34_01147 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_01148 PF00871 Acetokinase family B34_01149 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B34_01149 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain B34_01150 PF01515 Phosphate acetyl/butaryl transferase B34_01151 PF00989 PAS fold B34_01151 PF02954 Bacterial regulatory protein, Fis family B34_01151 PF00158 Sigma-54 interaction domain B34_01152 PF11118 Protein of unknown function (DUF2627) B34_01153 PF03009 Glycerophosphoryl diester phosphodiesterase family B34_01154 PF01520 N-acetylmuramoyl-L-alanine amidase B34_01156 PF06426 Serine acetyltransferase, N-terminal B34_01156 PF00132 Bacterial transferase hexapeptide (six repeats) B34_01158 PF08769 Sporulation initiation factor Spo0A C terminal B34_01158 PF00072 Response regulator receiver domain B34_01159 PF17820 PDZ domain B34_01159 PF05580 SpoIVB peptidase S55 B34_01160 PF13476 AAA domain B34_01161 PF02863 Arginine repressor, C-terminal domain B34_01161 PF01316 Arginine repressor, DNA binding domain B34_01162 PF01728 FtsJ-like methyltransferase B34_01162 PF01479 S4 domain B34_01163 PF02780 Transketolase, C-terminal domain B34_01163 PF02779 Transketolase, pyrimidine binding domain B34_01163 PF13292 1-deoxy-D-xylulose-5-phosphate synthase B34_01164 PF00348 Polyprenyl synthetase B34_01165 PF02609 Exonuclease VII small subunit B34_01166 PF13742 OB-fold nucleic acid binding domain B34_01166 PF02601 Exonuclease VII, large subunit B34_01167 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain B34_01167 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain B34_01168 PF01029 NusB family B34_01169 PF03780 Asp23 family, cell envelope-related function B34_01170 PF02785 Biotin carboxylase C-terminal domain B34_01170 PF00289 Biotin carboxylase, N-terminal domain B34_01170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B34_01171 PF00364 Biotin-requiring enzyme B34_01172 PF12685 SpoIIIAH-like protein B34_01174 PF09581 Stage III sporulation protein AF (Spore_III_AF) B34_01175 PF09546 Stage III sporulation protein AE (spore_III_AE) B34_01176 PF06686 Stage III sporulation protein AC/AD protein family B34_01177 PF06686 Stage III sporulation protein AC/AD protein family B34_01178 PF09548 Stage III sporulation protein AB (spore_III_AB) B34_01180 PF10942 Protein of unknown function (DUF2619) B34_01181 PF08207 Elongation factor P (EF-P) KOW-like domain B34_01181 PF09285 Elongation factor P, C-terminal B34_01181 PF01132 Elongation factor P (EF-P) OB domain B34_01182 PF01321 Creatinase/Prolidase N-terminal domain B34_01182 PF00557 Metallopeptidase family M24 B34_01183 PF01220 Dehydroquinase class II B34_01184 PF11085 Conserved membrane protein YqhR B34_01185 PF07136 Protein of unknown function (DUF1385) B34_01187 PF01734 Patatin-like phospholipase B34_01188 PF02742 Iron dependent repressor, metal binding and dimerisation domain B34_01188 PF01325 Iron dependent repressor, N-terminal DNA binding domain B34_01189 PF03099 Biotin/lipoate A/B protein ligase family B34_01190 PF00581 Rhodanese-like domain B34_01191 PF04069 Substrate binding domain of ABC-type glycine betaine transport system B34_01192 PF00528 Binding-protein-dependent transport system inner membrane component B34_01193 PF00005 ABC transporter B34_01193 PF00571 CBS domain B34_01194 PF02347 Glycine cleavage system P-protein B34_01195 PF02347 Glycine cleavage system P-protein B34_01196 PF01571 Aminomethyltransferase folate-binding domain B34_01196 PF08669 Glycine cleavage T-protein C-terminal barrel domain B34_01197 PF00176 SNF2 family N-terminal domain B34_01197 PF00271 Helicase conserved C-terminal domain B34_01198 PF11079 Bacterial protein YqhG of unknown function B34_01199 PF08671 Anti-repressor SinI B34_01200 PF01381 Helix-turn-helix B34_01200 PF08671 Anti-repressor SinI B34_01201 PF12389 Camelysin metallo-endopeptidase B34_01204 PF13028 Protein of unknown function (DUF3889) B34_01205 PF14038 YqzE-like protein B34_01207 PF15980 Putative Competence protein ComGF B34_01208 PF07963 Prokaryotic N-terminal methylation motif B34_01209 PF07963 Prokaryotic N-terminal methylation motif B34_01216 PF01510 N-acetylmuramoyl-L-alanine amidase B34_01216 PF01471 Putative peptidoglycan binding domain B34_01217 PF04688 SPP1 phage holin B34_01218 PF10779 Haemolysin XhlA B34_01220 PF09693 Phage uncharacterised protein (Phage_XkdX) B34_01221 PF09636 XkdW protein B34_01224 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) B34_01225 PF04865 Baseplate J-like protein B34_01226 PF10934 Protein of unknown function (DUF2634) B34_01227 PF10844 Protein of unknown function (DUF2577) B34_01229 PF01476 LysM domain B34_01230 PF01464 Transglycosylase SLT domain B34_01230 PF01464 Transglycosylase SLT domain B34_01232 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC B34_01234 PF09393 Phage tail tube protein B34_01235 PF17481 Phage tail sheath protein beta-sandwich domain B34_01235 PF17482 Phage tail sheath C-terminal domain B34_01235 PF04984 Phage tail sheath protein subtilisin-like domain B34_01237 PF04883 Bacteriophage HK97-gp10, putative tail-component B34_01238 PF12206 Domain of unknown function (DUF3599) B34_01239 PF11436 Protein of unknown function (DUF3199) B34_01240 PF14553 YqbF, hypothetical protein domain B34_01241 PF05065 Phage capsid family B34_01242 PF14550 Putative phage serine protease XkdF B34_01244 PF04233 Phage Mu protein F like protein B34_01245 PF04860 Phage portal protein B34_01246 PF04466 Phage terminase large subunit B34_01246 PF17288 Terminase RNAseH like domain B34_01252 PF14449 Pre-toxin TG B34_01252 PF04740 LXG domain of WXG superfamily B34_01253 PF18801 response regulator aspartate phosphatase H, N terminal B34_01260 PF13302 Acetyltransferase (GNAT) domain B34_01261 PF17356 Phage-like element PBSX protein XtrA B34_01265 PF05866 Endodeoxyribonuclease RusA B34_01269 PF00772 DnaB-like helicase N terminal domain B34_01269 PF03796 DnaB-like helicase C terminal domain B34_01273 PF03837 RecT family B34_01274 PF09588 YqaJ-like viral recombinase domain B34_01276 PF09466 Hypothetical protein Yqai B34_01283 PF01381 Helix-turn-helix B34_01284 PF06114 IrrE N-terminal-like domain B34_01287 PF00482 Type II secretion system (T2SS), protein F B34_01288 PF00437 Type II/IV secretion system protein B34_01289 PF01740 STAS domain B34_01289 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain B34_01291 PF03960 ArsC family B34_01292 PF11117 Protein of unknown function (DUF2626) B34_01293 PF00753 Metallo-beta-lactamase superfamily B34_01294 PF10958 Protein of unknown function (DUF2759) B34_01295 PF01910 Thiamine-binding protein B34_01297 PF00246 Zinc carboxypeptidase B34_01298 PF01497 Periplasmic binding protein B34_01300 PF00884 Sulfatase B34_01301 PF00480 ROK family B34_01302 PF03323 Bacillus/Clostridium GerA spore germination protein B34_01303 PF01694 Rhomboid family B34_01305 PF01812 5-formyltetrahydrofolate cyclo-ligase family B34_01306 PF00471 Ribosomal protein L33 B34_01307 PF00534 Glycosyl transferases group 1 B34_01307 PF13439 Glycosyltransferase Family 4 B34_01311 PF00005 ABC transporter B34_01312 PF00005 ABC transporter B34_01313 PF00528 Binding-protein-dependent transport system inner membrane component B34_01314 PF00528 Binding-protein-dependent transport system inner membrane component B34_01315 PF12849 PBP superfamily domain B34_01317 PF07690 Major Facilitator Superfamily B34_01318 PF02777 Iron/manganese superoxide dismutases, C-terminal domain B34_01318 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain B34_01319 PF04306 Protein of unknown function (DUF456) B34_01320 PF06691 Protein of unknown function (DUF1189) B34_01322 PF04551 GcpE protein B34_01325 PF01475 Ferric uptake regulator family B34_01326 PF00950 ABC 3 transport family B34_01327 PF00005 ABC transporter B34_01328 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 B34_01328 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) B34_01329 PF11116 Protein of unknown function (DUF2624) B34_01330 PF01261 Xylose isomerase-like TIM barrel B34_01331 PF00270 DEAD/DEAH box helicase B34_01331 PF00271 Helicase conserved C-terminal domain B34_01333 PF02401 LytB protein B34_01334 PF01784 NIF3 (NGG1p interacting factor 3) B34_01335 PF04816 tRNA (adenine(22)-N(1))-methyltransferase B34_01336 PF04493 Endonuclease V B34_01337 PF04493 Endonuclease V B34_01346 PF04740 LXG domain of WXG superfamily B34_01346 PF14449 Pre-toxin TG B34_01346 PF14431 YwqJ-like deaminase B34_01349 PF13442 Cytochrome C oxidase, cbb3-type, subunit III B34_01350 PF04542 Sigma-70 region 2 B34_01350 PF00140 Sigma-70 factor, region 1.2 B34_01350 PF04539 Sigma-70 region 3 B34_01350 PF04545 Sigma-70, region 4 B34_01350 PF03979 Sigma-70 factor, region 1.1 B34_01351 PF08275 DNA primase catalytic core, N-terminal domain B34_01351 PF01807 CHC2 zinc finger B34_01351 PF10410 DnaB-helicase binding domain of primase B34_01352 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 B34_01353 PF03618 Kinase/pyrophosphorylase B34_01354 PF00571 CBS domain B34_01354 PF08279 HTH domain B34_01355 PF02092 Glycyl-tRNA synthetase beta subunit B34_01356 PF02091 Glycyl-tRNA synthetase alpha subunit B34_01357 PF11967 Recombination protein O N terminal B34_01357 PF02565 Recombination protein O C terminal B34_01358 PF14006 YqzL-like protein B34_01359 PF01926 50S ribosome-binding GTPase B34_01359 PF07650 KH domain B34_01360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region B34_01361 PF01219 Prokaryotic diacylglycerol kinase B34_01362 PF02130 Uncharacterized protein family UPF0054 B34_01363 PF07697 7TM-HD extracellular B34_01363 PF01966 HD domain B34_01363 PF07698 7TM receptor with intracellular HD hydrolase B34_01364 PF02562 PhoH-like protein B34_01365 PF06898 Putative stage IV sporulation protein YqfD B34_01366 PF07873 YabP family B34_01368 PF12127 SigmaW regulon antibacterial B34_01369 PF01957 NfeD-like C-terminal, partner-binding B34_01369 PF01972 Serine dehydrogenase proteinase B34_01370 PF09424 Yqey-like protein B34_01371 PF01165 Ribosomal protein S21 B34_01372 PF02690 Na+/Pi-cotransporter B34_01373 PF01791 DeoC/LacD family aldolase B34_01374 PF00919 Uncharacterized protein family UPF0004 B34_01374 PF01938 TRAM domain B34_01374 PF04055 Radical SAM superfamily B34_01375 PF04452 RNA methyltransferase B34_01377 PF00226 DnaJ domain B34_01377 PF01556 DnaJ C terminal domain B34_01377 PF00684 DnaJ central domain B34_01378 PF00012 Hsp70 protein B34_01379 PF01025 GrpE B34_01380 PF01628 HrcA protein C terminal domain B34_01381 PF04055 Radical SAM superfamily B34_01381 PF06969 HemN C-terminal domain B34_01382 PF00679 Elongation factor G C-terminus B34_01382 PF03144 Elongation factor Tu domain 2 B34_01382 PF00009 Elongation factor Tu GTP binding domain B34_01382 PF06421 GTP-binding protein LepA C-terminus B34_01383 PF12438 Protein of unknown function (DUF3679) B34_01384 PF07454 Stage II sporulation protein P (SpoIIP) B34_01385 PF03418 Germination protease B34_01386 PF01649 Ribosomal protein S20 B34_01387 PF06144 DNA polymerase III, delta subunit B34_01388 PF14141 YqzM-like protein B34_01389 PF13567 Domain of unknown function (DUF4131) B34_01389 PF03772 Competence protein B34_01389 PF00753 Metallo-beta-lactamase superfamily B34_01390 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region B34_01391 PF10531 SLBB domain B34_01392 PF14748 Pyrroline-5-carboxylate reductase dimerisation B34_01392 PF03807 NADP oxidoreductase coenzyme F420-dependent B34_01393 PF13649 Methyltransferase domain B34_01395 PF01966 HD domain B34_01396 PF01467 Cytidylyltransferase-like B34_01397 PF01985 CRS1 / YhbY (CRM) domain B34_01398 PF18317 Shikimate 5'-dehydrogenase C-terminal domain B34_01398 PF08501 Shikimate dehydrogenase substrate binding domain B34_01398 PF01488 Shikimate / quinate 5-dehydrogenase B34_01399 PF01926 50S ribosome-binding GTPase B34_01402 PF00657 GDSL-like Lipase/Acylhydrolase B34_01403 PF12746 GNAT acetyltransferase B34_01404 PF10057 Uncharacterized conserved protein (DUF2294) B34_01405 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B34_01405 PF00384 Molybdopterin oxidoreductase B34_01405 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B34_01405 PF01568 Molydopterin dinucleotide binding domain B34_01405 PF00037 4Fe-4S binding domain B34_01406 PF07849 Protein of unknown function (DUF1641) B34_01408 PF04542 Sigma-70 region 2 B34_01408 PF04545 Sigma-70, region 4 B34_01410 PF00005 ABC transporter B34_01413 PF07454 Stage II sporulation protein P (SpoIIP) B34_01415 PF04542 Sigma-70 region 2 B34_01415 PF04545 Sigma-70, region 4 B34_01418 PF17094 Uncharacterised protein family (UPF0715) B34_01422 PF00753 Metallo-beta-lactamase superfamily B34_01424 PF00196 Bacterial regulatory proteins, luxR family B34_01424 PF00072 Response regulator receiver domain B34_01425 PF07730 Histidine kinase B34_01425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_01426 PF00085 Thioredoxin B34_01427 PF01925 Sulfite exporter TauE/SafE B34_01428 PF01206 Sulfurtransferase TusA B34_01429 PF00753 Metallo-beta-lactamase superfamily B34_01429 PF00581 Rhodanese-like domain B34_01430 PF01206 Sulfurtransferase TusA B34_01430 PF00581 Rhodanese-like domain B34_01431 PF13686 DsrE/DsrF/DrsH-like family B34_01432 PF02583 Metal-sensitive transcriptional repressor B34_01436 PF01809 Putative membrane protein insertion efficiency factor B34_01438 PF01380 SIS domain B34_01439 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family B34_01440 PF01638 HxlR-like helix-turn-helix B34_01441 PF00487 Fatty acid desaturase B34_01442 PF07730 Histidine kinase B34_01443 PF00072 Response regulator receiver domain B34_01443 PF00196 Bacterial regulatory proteins, luxR family B34_01444 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_01445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B34_01446 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B34_01447 PF00528 Binding-protein-dependent transport system inner membrane component B34_01449 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_01449 PF00005 ABC transporter B34_01450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_01450 PF00005 ABC transporter B34_01454 PF12833 Helix-turn-helix domain B34_01454 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term B34_01455 PF00106 short chain dehydrogenase B34_01458 PF00067 Cytochrome P450 B34_01459 PF01925 Sulfite exporter TauE/SafE B34_01461 PF00106 short chain dehydrogenase B34_01462 PF00251 Glycosyl hydrolases family 32 N-terminal domain B34_01462 PF08244 Glycosyl hydrolases family 32 C terminal B34_01463 PF03613 PTS system mannose/fructose/sorbose family IID component B34_01464 PF03609 PTS system sorbose-specific iic component B34_01465 PF03830 PTS system sorbose subfamily IIB component B34_01466 PF03610 PTS system fructose IIA component B34_01467 PF00874 PRD domain B34_01467 PF03610 PTS system fructose IIA component B34_01467 PF00158 Sigma-54 interaction domain B34_01469 PF00302 Chloramphenicol acetyltransferase B34_01470 PF12833 Helix-turn-helix domain B34_01470 PF02805 Metal binding domain of Ada B34_01471 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain B34_01471 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain B34_01472 PF00248 Aldo/keto reductase family B34_01473 PF07690 Major Facilitator Superfamily B34_01474 PF01638 HxlR-like helix-turn-helix B34_01475 PF03575 Peptidase family S51 B34_01476 PF02602 Uroporphyrinogen-III synthase HemD B34_01478 PF01497 Periplasmic binding protein B34_01479 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_01479 PF03466 LysR substrate binding domain B34_01480 PF07690 Major Facilitator Superfamily B34_01482 PF00258 Flavodoxin B34_01482 PF00667 FAD binding domain B34_01482 PF00067 Cytochrome P450 B34_01482 PF00175 Oxidoreductase NAD-binding domain B34_01483 PF16295 Tetracyclin repressor-like, C-terminal domain B34_01483 PF00440 Bacterial regulatory proteins, tetR family B34_01484 PF00082 Subtilase family B34_01484 PF17936 Bacterial Ig domain B34_01485 PF08241 Methyltransferase domain B34_01487 PF09501 Probable sporulation protein (Bac_small_yrzI) B34_01488 PF14143 YrhC-like protein B34_01489 PF01053 Cys/Met metabolism PLP-dependent enzyme B34_01490 PF00291 Pyridoxal-phosphate dependent enzyme B34_01491 PF01048 Phosphorylase superfamily B34_01492 PF13649 Methyltransferase domain B34_01493 PF10750 Protein of unknown function (DUF2536) B34_01494 PF07423 Domain of unknown function (DUF1510) B34_01495 PF03717 Penicillin-binding Protein dimerisation domain B34_01495 PF00905 Penicillin binding protein transpeptidase domain B34_01496 PF03449 Transcription elongation factor, N-terminal B34_01496 PF01272 Transcription elongation factor, GreA/GreB, C-term B34_01497 PF00485 Phosphoribulokinase / Uridine kinase family B34_01501 PF02618 YceG-like family B34_01502 PF06949 Protein of unknown function (DUF1292) B34_01503 PF03652 Holliday junction resolvase B34_01504 PF06135 IreB regulatory phosphoprotein B34_01505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain B34_01505 PF02272 DHHA1 domain B34_01505 PF01411 tRNA synthetases class II (A) B34_01506 PF01594 AI-2E family transporter B34_01508 PF05239 PRC-barrel domain B34_01509 PF14490 Helix-hairpin-helix containing domain B34_01509 PF13538 UvrD-like helicase C-terminal domain B34_01509 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain B34_01510 PF13181 Tetratricopeptide repeat B34_01510 PF07719 Tetratricopeptide repeat B34_01512 PF00266 Aminotransferase class-V B34_01513 PF02082 Transcriptional regulator B34_01514 PF05496 Holliday junction DNA helicase RuvB P-loop domain B34_01514 PF16193 AAA C-terminal domain B34_01514 PF12002 MgsA AAA+ ATPase C terminal B34_01515 PF00899 ThiF family B34_01516 PF00152 tRNA synthetases class II (D, K and N) B34_01516 PF02938 GAD domain B34_01516 PF01336 OB-fold nucleic acid binding domain B34_01517 PF13393 Histidyl-tRNA synthetase B34_01517 PF03129 Anticodon binding domain B34_01519 PF01520 N-acetylmuramoyl-L-alanine amidase B34_01519 PF08239 Bacterial SH3 domain B34_01520 PF02580 D-Tyr-tRNA(Tyr) deacylase B34_01521 PF02824 TGS domain B34_01521 PF04607 Region found in RelA / SpoT proteins B34_01521 PF13291 ACT domain B34_01522 PF00156 Phosphoribosyl transferase domain B34_01523 PF10141 Single-strand DNA-specific exonuclease, C terminal domain B34_01523 PF17768 RecJ OB domain B34_01523 PF02272 DHHA1 domain B34_01523 PF01368 DHH family B34_01524 PF06305 Lipopolysaccharide assembly protein A domain B34_01525 PF02355 Protein export membrane protein B34_01525 PF07549 SecD/SecF GG Motif B34_01526 PF13797 Post-transcriptional regulator B34_01527 PF01943 Polysaccharide biosynthesis protein B34_01527 PF14667 Polysaccharide biosynthesis C-terminal domain B34_01528 PF04239 Protein of unknown function (DUF421) B34_01529 PF12670 Protein of unknown function (DUF3792) B34_01530 PF02699 Preprotein translocase subunit B34_01531 PF01702 Queuine tRNA-ribosyltransferase B34_01532 PF02547 Queuosine biosynthesis protein B34_01533 PF11146 Protein of unknown function (DUF2905) B34_01534 PF05496 Holliday junction DNA helicase RuvB P-loop domain B34_01534 PF05491 RuvB C-terminal winged helix domain B34_01534 PF17864 RuvB AAA lid domain B34_01535 PF07499 RuvA, C-terminal domain B34_01535 PF01330 RuvA N terminal domain B34_01536 PF08977 Bypass of Forespore C, N terminal B34_01536 PF08955 BofC C-terminal domain B34_01539 PF08141 Small acid-soluble spore protein H family B34_01540 PF05163 DinB family B34_01541 PF05908 Poly-gamma-glutamate hydrolase B34_01544 PF01709 Transcriptional regulator B34_01545 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) B34_01546 PF01476 LysM domain B34_01547 PF02445 Quinolinate synthetase A protein B34_01548 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain B34_01548 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain B34_01549 PF00890 FAD binding domain B34_01549 PF02910 Fumarate reductase flavoprotein C-term B34_01550 PF00266 Aminotransferase class-V B34_01551 PF08279 HTH domain B34_01551 PF02829 3H domain B34_01552 PF00800 Prephenate dehydratase B34_01552 PF01842 ACT domain B34_01553 PF01842 ACT domain B34_01554 PF09269 Domain of unknown function (DUF1967) B34_01554 PF01018 GTP1/OBG B34_01554 PF01926 50S ribosome-binding GTPase B34_01555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain B34_01555 PF14682 Sporulation initiation phospho-transferase B, C-terminal B34_01556 PF01016 Ribosomal L27 protein B34_01557 PF04327 Cysteine protease Prp B34_01558 PF00829 Ribosomal prokaryotic L21 protein B34_01559 PF02163 Peptidase family M50 B34_01560 PF01551 Peptidase family M23 B34_01561 PF08327 Activator of Hsp90 ATPase homolog 1-like protein B34_01562 PF01022 Bacterial regulatory protein, arsR family B34_01563 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain B34_01564 PF03775 Septum formation inhibitor MinC, C-terminal domain B34_01565 PF04093 rod shape-determining protein MreD B34_01566 PF04085 rod shape-determining protein MreC B34_01568 PF04002 RadC-like JAB domain B34_01569 PF02545 Maf-like protein B34_01570 PF05036 Sporulation related domain B34_01571 PF06750 Bacterial Peptidase A24 N-terminal domain B34_01571 PF01478 Type IV leader peptidase family B34_01572 PF08245 Mur ligase middle domain B34_01572 PF02875 Mur ligase family, glutamate ligase domain B34_01573 PF10458 Valyl tRNA synthetase tRNA binding arm B34_01573 PF00133 tRNA synthetases class I (I, L, M and V) B34_01573 PF08264 Anticodon-binding domain of tRNA B34_01576 PF01476 LysM domain B34_01577 PF00202 Aminotransferase class-III B34_01578 PF00490 Delta-aminolevulinic acid dehydratase B34_01579 PF02602 Uroporphyrinogen-III synthase HemD B34_01580 PF03900 Porphobilinogen deaminase, C-terminal domain B34_01580 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain B34_01581 PF01578 Cytochrome C assembly protein B34_01582 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain B34_01582 PF01488 Shikimate / quinate 5-dehydrogenase B34_01582 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain B34_01584 PF01926 50S ribosome-binding GTPase B34_01585 PF02190 ATP-dependent protease La (LON) substrate-binding domain B34_01585 PF05362 Lon protease (S16) C-terminal proteolytic domain B34_01585 PF00004 ATPase family associated with various cellular activities (AAA) B34_01586 PF05362 Lon protease (S16) C-terminal proteolytic domain B34_01586 PF00004 ATPase family associated with various cellular activities (AAA) B34_01587 PF07724 AAA domain (Cdc48 subfamily) B34_01587 PF10431 C-terminal, D2-small domain, of ClpB protein B34_01587 PF06689 ClpX C4-type zinc finger B34_01588 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase B34_01588 PF05698 Bacterial trigger factor protein (TF) C-terminus B34_01588 PF05697 Bacterial trigger factor protein (TF) B34_01590 PF00694 Aconitase C-terminal domain B34_01591 PF00330 Aconitase family (aconitate hydratase) B34_01592 PF00180 Isocitrate/isopropylmalate dehydrogenase B34_01593 PF00682 HMGL-like B34_01593 PF08502 LeuA allosteric (dimerisation) domain B34_01594 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain B34_01594 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain B34_01595 PF01842 ACT domain B34_01595 PF10369 Small subunit of acetolactate synthase B34_01596 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B34_01596 PF00205 Thiamine pyrophosphate enzyme, central domain B34_01596 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B34_01597 PF01063 Amino-transferase class IV B34_01599 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B34_01599 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain B34_01602 PF04860 Phage portal protein B34_01603 PF04466 Phage terminase large subunit B34_01603 PF17288 Terminase RNAseH like domain B34_01606 PF00145 C-5 cytosine-specific DNA methylase B34_01609 PF04634 Protein of unknown function, DUF600 B34_01610 PF04740 LXG domain of WXG superfamily B34_01611 PF18801 response regulator aspartate phosphatase H, N terminal B34_01616 PF12850 Calcineurin-like phosphoesterase superfamily domain B34_01617 PF01725 Ham1 family B34_01618 PF03725 3' exoribonuclease family, domain 2 B34_01618 PF01138 3' exoribonuclease family, domain 1 B34_01619 PF10646 Sporulation and spore germination B34_01620 PF01177 Asp/Glu/Hydantoin racemase B34_01621 PF01047 MarR family B34_01622 PF00196 Bacterial regulatory proteins, luxR family B34_01623 PF00106 short chain dehydrogenase B34_01624 PF03061 Thioesterase superfamily B34_01625 PF13183 4Fe-4S dicluster domain B34_01625 PF13085 2Fe-2S iron-sulfur cluster binding domain B34_01626 PF02910 Fumarate reductase flavoprotein C-term B34_01626 PF00890 FAD binding domain B34_01627 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit B34_01628 PF10702 Protein of unknown function (DUF2507) B34_01629 PF01842 ACT domain B34_01629 PF13840 ACT domain B34_01629 PF00696 Amino acid kinase family B34_01630 PF08459 UvrC Helix-hairpin-helix N-terminal B34_01630 PF01541 GIY-YIG catalytic domain B34_01630 PF02151 UvrB/uvrC motif B34_01631 PF00085 Thioredoxin B34_01632 PF00766 Electron transfer flavoprotein FAD-binding domain B34_01632 PF01012 Electron transfer flavoprotein domain B34_01633 PF01012 Electron transfer flavoprotein domain B34_01634 PF00378 Enoyl-CoA hydratase/isomerase B34_01635 PF08359 YsiA-like protein, C-terminal region B34_01635 PF00440 Bacterial regulatory proteins, tetR family B34_01636 PF13193 AMP-binding enzyme C-terminal domain B34_01636 PF00501 AMP-binding enzyme B34_01637 PF03994 Domain of Unknown Function (DUF350) B34_01638 PF00488 MutS domain V B34_01638 PF01713 Smr domain B34_01639 PF14716 Helix-hairpin-helix domain B34_01639 PF14791 DNA polymerase beta thumb B34_01639 PF02811 PHP domain B34_01640 PF02674 Colicin V production protein B34_01641 PF05164 Cell division protein ZapA B34_01642 PF11858 Domain of unknown function (DUF3378) B34_01642 PF01351 Ribonuclease HII B34_01646 PF00005 ABC transporter B34_01646 PF12399 Branched-chain amino acid ATP-binding cassette transporter B34_01649 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain B34_01649 PF03147 Ferredoxin-fold anticodon binding domain B34_01649 PF01588 Putative tRNA binding domain B34_01649 PF03483 B3/4 domain B34_01649 PF03484 tRNA synthetase B5 domain B34_01650 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain B34_01650 PF01409 tRNA synthetases class II core domain (F) B34_01651 PF00588 SpoU rRNA Methylase family B34_01651 PF08032 RNA 2'-O ribose methyltransferase substrate binding B34_01652 PF14098 Small, acid-soluble spore protein I B34_01653 PF02554 Carbon starvation protein CstA B34_01653 PF13722 5TM C-terminal transporter carbon starvation CstA B34_01655 PF06964 Alpha-L-arabinofuranosidase C-terminal domain B34_01656 PF00528 Binding-protein-dependent transport system inner membrane component B34_01657 PF00528 Binding-protein-dependent transport system inner membrane component B34_01658 PF01547 Bacterial extracellular solute-binding protein B34_01659 PF13685 Iron-containing alcohol dehydrogenase B34_01660 PF00596 Class II Aldolase and Adducin N-terminal domain B34_01661 PF02782 FGGY family of carbohydrate kinases, C-terminal domain B34_01661 PF00370 FGGY family of carbohydrate kinases, N-terminal domain B34_01662 PF11762 L-arabinose isomerase C-terminal domain B34_01662 PF02610 L-arabinose isomerase B34_01663 PF02610 L-arabinose isomerase B34_01663 PF11762 L-arabinose isomerase C-terminal domain B34_01664 PF04616 Glycosyl hydrolases family 43 B34_01665 PF05343 M42 glutamyl aminopeptidase B34_01667 PF06961 Protein of unknown function (DUF1294) B34_01668 PF00453 Ribosomal protein L20 B34_01669 PF01632 Ribosomal protein L35 B34_01670 PF05198 Translation initiation factor IF-3, N-terminal domain B34_01670 PF00707 Translation initiation factor IF-3, C-terminal domain B34_01671 PF04172 LrgB-like family B34_01672 PF03788 LrgA family B34_01673 PF09423 PhoD-like phosphatase B34_01673 PF16655 PhoD-like phosphatase, N-terminal domain B34_01674 PF04397 LytTr DNA-binding domain B34_01674 PF00072 Response regulator receiver domain B34_01675 PF07694 5TMR of 5TMR-LYT B34_01675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_01675 PF06580 Histidine kinase B34_01678 PF02824 TGS domain B34_01678 PF03129 Anticodon binding domain B34_01678 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain B34_01678 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) B34_01679 PF08812 YtxC-like family B34_01680 PF09335 SNARE associated Golgi protein B34_01681 PF01695 IstB-like ATP binding protein B34_01681 PF07319 Primosomal protein DnaI N-terminus B34_01682 PF07261 Replication initiation and membrane attachment B34_01683 PF03477 ATP cone domain B34_01685 PF02675 S-adenosylmethionine decarboxylase B34_01686 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain B34_01686 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B34_01687 PF00544 Pectate lyase B34_01688 PF01121 Dephospho-CoA kinase B34_01689 PF02659 Putative manganese efflux pump B34_01690 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain B34_01690 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain B34_01690 PF06827 Zinc finger found in FPG and IleRS B34_01691 PF01367 5'-3' exonuclease, C-terminal SAM fold B34_01691 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain B34_01691 PF00476 DNA polymerase family A B34_01692 PF00989 PAS fold B34_01692 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_01692 PF00512 His Kinase A (phospho-acceptor) domain B34_01692 PF16736 Single Cache-like B34_01693 PF00072 Response regulator receiver domain B34_01693 PF00486 Transcriptional regulatory protein, C terminal B34_01694 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain B34_01694 PF00056 lactate/malate dehydrogenase, NAD binding domain B34_01695 PF00180 Isocitrate/isopropylmalate dehydrogenase B34_01696 PF00285 Citrate synthase, C-terminal domain B34_01697 PF04284 Protein of unknown function (DUF441) B34_01698 PF01594 AI-2E family transporter B34_01699 PF04186 FxsA cytoplasmic membrane protein B34_01700 PF02887 Pyruvate kinase, alpha/beta domain B34_01700 PF00224 Pyruvate kinase, barrel domain B34_01700 PF00391 PEP-utilising enzyme, mobile domain B34_01701 PF00365 Phosphofructokinase B34_01702 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit B34_01703 PF01039 Carboxyl transferase domain B34_01703 PF17848 Acetyl-coA carboxylase zinc finger domain B34_01704 PF03949 Malic enzyme, NAD binding domain B34_01704 PF00390 Malic enzyme, N-terminal domain B34_01705 PF07733 Bacterial DNA polymerase III alpha NTPase domain B34_01705 PF17657 Bacterial DNA polymerase III alpha subunit finger domain B34_01705 PF14579 Helix-hairpin-helix motif B34_01705 PF01336 OB-fold nucleic acid binding domain B34_01705 PF02811 PHP domain B34_01706 PF14034 Sporulation protein YtrH B34_01709 PF02272 DHHA1 domain B34_01709 PF01368 DHH family B34_01710 PF14007 YtpI-like protein B34_01711 PF00571 CBS domain B34_01711 PF03061 Thioesterase superfamily B34_01711 PF00392 Bacterial regulatory proteins, gntR family B34_01711 PF07085 DRTGG domain B34_01712 PF03551 Transcriptional regulator PadR-like family B34_01712 PF10400 Virulence activator alpha C-term B34_01716 PF14698 Argininosuccinate lyase C-terminal B34_01716 PF00206 Lyase B34_01717 PF00764 Arginosuccinate synthase B34_01718 PF00994 Probable molybdopterin binding domain B34_01719 PF00871 Acetokinase family B34_01720 PF02384 N-6 DNA Methylase B34_01721 PF08534 Redoxin B34_01722 PF09579 Sporulation protein YtfJ (Spore_YtfJ) B34_01723 PF11167 Protein of unknown function (DUF2953) B34_01724 PF06271 RDD family B34_01725 PF01343 Peptidase family S49 B34_01726 PF01513 ATP-NAD kinase B34_01729 PF07690 Major Facilitator Superfamily B34_01731 PF13193 AMP-binding enzyme C-terminal domain B34_01731 PF00501 AMP-binding enzyme B34_01732 PF00269 Small, acid-soluble spore proteins, alpha/beta type B34_01733 PF02926 THUMP domain B34_01733 PF02568 Thiamine biosynthesis protein (ThiI) B34_01734 PF00266 Aminotransferase class-V B34_01735 PF05525 Branched-chain amino acid transport protein B34_01737 PF13276 HTH-like domain B34_01737 PF00665 Integrase core domain B34_01737 PF13333 Integrase core domain B34_01738 PF06160 Septation ring formation regulator, EzrA B34_01739 PF02811 PHP domain B34_01740 PF00440 Bacterial regulatory proteins, tetR family B34_01741 PF13185 GAF domain B34_01742 PF00990 Diguanylate cyclase, GGDEF domain B34_01743 PF00990 Diguanylate cyclase, GGDEF domain B34_01744 PF01479 S4 domain B34_01744 PF00163 Ribosomal protein S4/S9 N-terminal domain B34_01747 PF05656 Protein of unknown function (DUF805) B34_01748 PF12706 Beta-lactamase superfamily domain B34_01749 PF12706 Beta-lactamase superfamily domain B34_01750 PF01037 Lrp/AsnC ligand binding domain B34_01752 PF01479 S4 domain B34_01752 PF00579 tRNA synthetases class I (W and Y) B34_01753 PF00501 AMP-binding enzyme B34_01753 PF13193 AMP-binding enzyme C-terminal domain B34_01754 PF00583 Acetyltransferase (GNAT) family B34_01755 PF00571 CBS domain B34_01756 PF00850 Histone deacetylase domain B34_01757 PF00691 OmpA family B34_01757 PF13677 Membrane MotB of proton-channel complex MotA/MotB B34_01758 PF01618 MotA/TolQ/ExbB proton channel family B34_01759 PF00356 Bacterial regulatory proteins, lacI family B34_01760 PF01817 Chorismate mutase type II B34_01760 PF00793 DAHP synthetase I family B34_01763 PF11009 Protein of unknown function (DUF2847) B34_01764 PF12732 YtxH-like protein B34_01765 PF06103 Bacterial protein of unknown function (DUF948) B34_01766 PF08245 Mur ligase middle domain B34_01766 PF02875 Mur ligase family, glutamate ligase domain B34_01766 PF01225 Mur ligase family, catalytic domain B34_01767 PF01580 FtsK/SpoIIIE family B34_01767 PF09397 Ftsk gamma domain B34_01767 PF17854 FtsK alpha domain B34_01768 PF14794 Domain of unknown function (DUF4479) B34_01768 PF01588 Putative tRNA binding domain B34_01769 PF07285 Protein of unknown function (DUF1444) B34_01770 PF00085 Thioredoxin B34_01771 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ B34_01772 PF05343 M42 glutamyl aminopeptidase B34_01773 PF03413 Peptidase propeptide and YPEB domain B34_01774 PF03949 Malic enzyme, NAD binding domain B34_01774 PF00390 Malic enzyme, N-terminal domain B34_01775 PF00753 Metallo-beta-lactamase superfamily B34_01776 PF02390 Putative methyltransferase B34_01777 PF14165 YtzH-like protein B34_01778 PF01636 Phosphotransferase enzyme family B34_01779 PF17999 Pullulanase N1-terminal domain B34_01779 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) B34_01779 PF00128 Alpha amylase, catalytic domain B34_01780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) B34_01780 PF17999 Pullulanase N1-terminal domain B34_01780 PF00128 Alpha amylase, catalytic domain B34_01781 PF00781 Diacylglycerol kinase catalytic domain B34_01784 PF00291 Pyridoxal-phosphate dependent enzyme B34_01786 PF01546 Peptidase family M20/M25/M40 B34_01787 PF00860 Permease family B34_01788 PF08220 DeoR-like helix-turn-helix domain B34_01789 PF01479 S4 domain B34_01789 PF00849 RNA pseudouridylate synthase B34_01790 PF01943 Polysaccharide biosynthesis protein B34_01790 PF14667 Polysaccharide biosynthesis C-terminal domain B34_01792 PF02028 BCCT, betaine/carnitine/choline family transporter B34_01793 PF10957 Sporulation protein Cse60 B34_01794 PF00581 Rhodanese-like domain B34_01796 PF18801 response regulator aspartate phosphatase H, N terminal B34_01798 PF04854 Protein of unknown function, DUF624 B34_01799 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_01799 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_01801 PF07470 Glycosyl Hydrolase Family 88 B34_01802 PF00528 Binding-protein-dependent transport system inner membrane component B34_01803 PF12833 Helix-turn-helix domain B34_01803 PF17853 GGDEF-like domain B34_01804 PF13416 Bacterial extracellular solute-binding protein B34_01805 PF00528 Binding-protein-dependent transport system inner membrane component B34_01806 PF01370 NAD dependent epimerase/dehydratase family B34_01807 PF01738 Dienelactone hydrolase family B34_01809 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_01809 PF03466 LysR substrate binding domain B34_01810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_01811 PF08264 Anticodon-binding domain of tRNA B34_01811 PF13603 Leucyl-tRNA synthetase, Domain 2 B34_01811 PF00133 tRNA synthetases class I (I, L, M and V) B34_01811 PF09334 tRNA synthetases class I (M) B34_01812 PF14074 Protein of unknown function (DUF4257) B34_01813 PF07690 Major Facilitator Superfamily B34_01814 PF03180 NLPA lipoprotein B34_01815 PF04791 LMBR1-like membrane protein B34_01816 PF02687 FtsX-like permease family B34_01816 PF12704 MacB-like periplasmic core domain B34_01817 PF00005 ABC transporter B34_01819 PF00005 ABC transporter B34_01820 PF00392 Bacterial regulatory proteins, gntR family B34_01822 PF10732 Protein of unknown function (DUF2524) B34_01823 PF04055 Radical SAM superfamily B34_01823 PF16199 Radical_SAM C-terminal domain B34_01824 PF06962 Putative rRNA methylase B34_01825 PF00375 Sodium:dicarboxylate symporter family B34_01826 PF10776 Protein of unknown function (DUF2600) B34_01827 PF12146 Serine aminopeptidase, S33 B34_01828 PF00132 Bacterial transferase hexapeptide (six repeats) B34_01829 PF01569 PAP2 superfamily B34_01830 PF00534 Glycosyl transferases group 1 B34_01830 PF13439 Glycosyltransferase Family 4 B34_01831 PF13537 Glutamine amidotransferase domain B34_01831 PF00733 Asparagine synthase B34_01832 PF02772 S-adenosylmethionine synthetase, central domain B34_01832 PF00438 S-adenosylmethionine synthetase, N-terminal domain B34_01832 PF02773 S-adenosylmethionine synthetase, C-terminal domain B34_01833 PF01293 Phosphoenolpyruvate carboxykinase B34_01835 PF10763 Protein of unknown function (DUF2584) B34_01836 PF00326 Prolyl oligopeptidase family B34_01838 PF00005 ABC transporter B34_01839 PF00528 Binding-protein-dependent transport system inner membrane component B34_01840 PF00293 NUDIX domain B34_01842 PF05105 Bacteriophage holin family B34_01843 PF00210 Ferritin-like domain B34_01845 PF13115 YtkA-like B34_01846 PF02664 S-Ribosylhomocysteinase (LuxS) B34_01847 PF01809 Putative membrane protein insertion efficiency factor B34_01848 PF00484 Carbonic anhydrase B34_01849 PF07683 Cobalamin synthesis protein cobW C-terminal domain B34_01849 PF02492 CobW/HypB/UreG, nucleotide-binding domain B34_01850 PF01297 Zinc-uptake complex component A periplasmic B34_01851 PF01197 Ribosomal protein L31 B34_01852 PF01654 Cytochrome bd terminal oxidase subunit I B34_01853 PF02322 Cytochrome bd terminal oxidase subunit II B34_01854 PF07561 Domain of Unknown Function (DUF1540) B34_01856 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain B34_01856 PF13378 Enolase C-terminal domain-like B34_01857 PF00501 AMP-binding enzyme B34_01857 PF13193 AMP-binding enzyme C-terminal domain B34_01858 PF00378 Enoyl-CoA hydratase/isomerase B34_01859 PF00561 alpha/beta hydrolase fold B34_01860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B34_01860 PF16582 Middle domain of thiamine pyrophosphate B34_01860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B34_01861 PF00425 chorismate binding enzyme B34_01862 PF01040 UbiA prenyltransferase family B34_01863 PF01258 Prokaryotic dksA/traR C4-type zinc finger B34_01864 PF00343 Carbohydrate phosphorylase B34_01865 PF00534 Glycosyl transferases group 1 B34_01865 PF08323 Starch synthase catalytic domain B34_01866 PF00483 Nucleotidyl transferase B34_01867 PF00483 Nucleotidyl transferase B34_01868 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) B34_01868 PF02806 Alpha amylase, C-terminal all-beta domain B34_01868 PF00128 Alpha amylase, catalytic domain B34_01893 PF00392 Bacterial regulatory proteins, gntR family B34_01894 PF09515 Thiamine transporter protein (Thia_YuaJ) B34_01895 PF04203 Sortase domain B34_01898 PF18801 response regulator aspartate phosphatase H, N terminal B34_01900 PF01470 Pyroglutamyl peptidase B34_01901 PF02254 TrkA-N domain B34_01901 PF02080 TrkA-C domain B34_01902 PF02386 Cation transport protein B34_01904 PF12867 DinB superfamily B34_01906 PF00465 Iron-containing alcohol dehydrogenase B34_01910 PF04072 Leucine carboxyl methyltransferase B34_01911 PF01168 Alanine racemase, N-terminal domain B34_01911 PF00842 Alanine racemase, C-terminal domain B34_01912 PF00190 Cupin B34_01920 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) B34_01923 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase B34_01925 PF00149 Calcineurin-like phosphoesterase B34_01926 PF02673 Bacitracin resistance protein BacA B34_01927 PF01594 AI-2E family transporter B34_01928 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_01928 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_01929 PF01965 DJ-1/PfpI family B34_01930 PF00672 HAMP domain B34_01930 PF02743 Cache domain B34_01930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_01931 PF02743 Cache domain B34_01931 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_01931 PF00672 HAMP domain B34_01932 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_01932 PF00672 HAMP domain B34_01932 PF02743 Cache domain B34_01934 PF03060 Nitronate monooxygenase B34_01935 PF01894 Uncharacterised protein family UPF0047 B34_01936 PF00128 Alpha amylase, catalytic domain B34_01936 PF16657 Maltogenic Amylase, C-terminal domain B34_01939 PF01670 Glycosyl hydrolase family 12 B34_01940 PF03471 Transporter associated domain B34_01940 PF01595 Cyclin M transmembrane N-terminal domain B34_01940 PF00571 CBS domain B34_01941 PF04298 Putative neutral zinc metallopeptidase B34_01943 PF11458 Membrane-integrating protein Mistic B34_01944 PF07885 Ion channel B34_01944 PF02254 TrkA-N domain B34_01945 PF08868 YugN-like family B34_01946 PF04239 Protein of unknown function (DUF421) B34_01947 PF03073 TspO/MBR family B34_01948 PF13302 Acetyltransferase (GNAT) domain B34_01949 PF00342 Phosphoglucose isomerase B34_01950 PF00465 Iron-containing alcohol dehydrogenase B34_01951 PF04070 Domain of unknown function (DUF378) B34_01952 PF00575 S1 RNA binding domain B34_01953 PF00155 Aminotransferase class I and II B34_01954 PF01037 Lrp/AsnC ligand binding domain B34_01955 PF08386 TAP-like protein B34_01955 PF00561 alpha/beta hydrolase fold B34_01956 PF08958 Domain of unknown function (DUF1871) B34_01958 PF00155 Aminotransferase class I and II B34_01959 PF00155 Aminotransferase class I and II B34_01961 PF08810 Kinase associated protein B B34_01962 PF00929 Exonuclease B34_01963 PF07690 Major Facilitator Superfamily B34_01964 PF00912 Transglycosylase B34_01964 PF00905 Penicillin binding protein transpeptidase domain B34_01965 PF04134 Protein of unknown function, DUF393 B34_01966 PF17328 Family of unknown function (DUF5366) B34_01967 PF00989 PAS fold B34_01967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_01967 PF17203 Single cache domain 3 B34_01967 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain B34_01968 PF00072 Response regulator receiver domain B34_01969 PF01066 CDP-alcohol phosphatidyltransferase B34_01970 PF09335 SNARE associated Golgi protein B34_01971 PF02666 Phosphatidylserine decarboxylase B34_01972 PF03390 2-hydroxycarboxylate transporter family B34_01974 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus B34_01974 PF00361 Proton-conducting membrane transporter B34_01974 PF13244 Domain of unknown function (DUF4040) B34_01975 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter B34_01976 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L B34_01977 PF00361 Proton-conducting membrane transporter B34_01978 PF01899 Na+/H+ ion antiporter subunit B34_01979 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) B34_01980 PF03334 Na+/H+ antiporter subunit B34_01981 PF03061 Thioesterase superfamily B34_01982 PF00196 Bacterial regulatory proteins, luxR family B34_01982 PF00072 Response regulator receiver domain B34_01983 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_01983 PF07730 Histidine kinase B34_01984 PF05952 Bacillus competence pheromone ComX B34_01986 PF08181 DegQ (SacQ) family B34_01989 PF08668 HDOD domain B34_01989 PF00563 EAL domain B34_01990 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain B34_01990 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain B34_01990 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family B34_01991 PF00857 Isochorismatase family B34_01992 PF07997 Protein of unknown function (DUF1694) B34_01993 PF14166 YueH-like protein B34_01995 PF01594 AI-2E family transporter B34_01996 PF02082 Transcriptional regulator B34_01997 PF07859 alpha/beta hydrolase fold B34_01997 PF00331 Glycosyl hydrolase family 10 B34_01999 PF01966 HD domain B34_02000 PF00106 short chain dehydrogenase B34_02001 PF17355 Family of unknown function (DUF5383) B34_02003 PF01580 FtsK/SpoIIIE family B34_02003 PF12538 DNA transporter B34_02004 PF10140 WXG100 protein secretion system (Wss), protein YukC B34_02005 PF08817 WXG100 protein secretion system (Wss), protein YukD B34_02006 PF06013 Proteins of 100 residues with WXG B34_02007 PF01235 Sodium:alanine symporter family B34_02008 PF06018 CodY GAF-like domain B34_02008 PF17853 GGDEF-like domain B34_02008 PF13556 PucR C-terminal helix-turn-helix domain B34_02009 PF01262 Alanine dehydrogenase/PNT, C-terminal domain B34_02009 PF05222 Alanine dehydrogenase/PNT, N-terminal domain B34_02011 PF00174 Oxidoreductase molybdopterin binding domain B34_02012 PF02632 BioY family B34_02013 PF13726 Na+-H+ antiporter family B34_02013 PF03553 Na+/H+ antiporter family B34_02014 PF02789 Cytosol aminopeptidase family, N-terminal domain B34_02014 PF00883 Cytosol aminopeptidase family, catalytic domain B34_02015 PF02681 Divergent PAP2 family B34_02016 PF06725 3D domain B34_02017 PF14068 Putative membrane protein B34_02018 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_02019 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_02021 PF14169 Cold-inducible protein YdjO B34_02022 PF00583 Acetyltransferase (GNAT) family B34_02023 PF01521 Iron-sulphur cluster biosynthesis B34_02024 PF01678 Diaminopimelate epimerase B34_02025 PF07662 Na+ dependent nucleoside transporter C-terminus B34_02025 PF01773 Na+ dependent nucleoside transporter N-terminus B34_02026 PF07293 Protein of unknown function (DUF1450) B34_02027 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_02028 PF08818 Domain of unknown function (DU1801) B34_02030 PF18801 response regulator aspartate phosphatase H, N terminal B34_02031 PF05870 Phenolic acid decarboxylase (PAD) B34_02033 PF07315 Protein of unknown function (DUF1462) B34_02034 PF01106 NifU-like domain B34_02035 PF07676 WD40-like Beta Propeller Repeat B34_02035 PF00326 Prolyl oligopeptidase family B34_02036 PF00288 GHMP kinases N terminal domain B34_02036 PF08544 GHMP kinases C terminal B34_02037 PF00291 Pyridoxal-phosphate dependent enzyme B34_02038 PF00742 Homoserine dehydrogenase B34_02038 PF03447 Homoserine dehydrogenase, NAD binding domain B34_02038 PF01842 ACT domain B34_02039 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B34_02039 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B34_02041 PF04608 Phosphatidylglycerophosphatase A B34_02042 PF13344 Haloacid dehalogenase-like hydrolase B34_02043 PF01934 Protein of unknown function DUF86 B34_02044 PF06265 Protein of unknown function (DUF1027) B34_02045 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) B34_02046 PF04055 Radical SAM superfamily B34_02046 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family B34_02047 PF01551 Peptidase family M23 B34_02049 PF00209 Sodium:neurotransmitter symporter family B34_02050 PF09560 Sporulation protein YunB (Spo_YunB) B34_02051 PF08827 Domain of unknown function (DUF1805) B34_02052 PF02872 5'-nucleotidase, C-terminal domain B34_02053 PF01925 Sulfite exporter TauE/SafE B34_02054 PF01904 Protein of unknown function DUF72 B34_02056 PF13977 BetI-type transcriptional repressor, C-terminal B34_02056 PF00440 Bacterial regulatory proteins, tetR family B34_02058 PF00266 Aminotransferase class-V B34_02059 PF01546 Peptidase family M20/M25/M40 B34_02060 PF17853 GGDEF-like domain B34_02060 PF13556 PucR C-terminal helix-turn-helix domain B34_02060 PF07905 Purine catabolism regulatory protein-like family B34_02061 PF07690 Major Facilitator Superfamily B34_02062 PF03606 C4-dicarboxylate anaerobic carrier B34_02063 PF03606 C4-dicarboxylate anaerobic carrier B34_02064 PF02885 Glycosyl transferase family, helical bundle domain B34_02064 PF00591 Glycosyl transferase family, a/b domain B34_02065 PF02885 Glycosyl transferase family, helical bundle domain B34_02065 PF00591 Glycosyl transferase family, a/b domain B34_02066 PF04231 Endonuclease I B34_02068 PF01266 FAD dependent oxidoreductase B34_02072 PF18801 response regulator aspartate phosphatase H, N terminal B34_02073 PF01458 Uncharacterized protein family (UPF0051) B34_02074 PF01592 NifU-like N terminal domain B34_02075 PF00266 Aminotransferase class-V B34_02076 PF01458 Uncharacterized protein family (UPF0051) B34_02077 PF00005 ABC transporter B34_02078 PF16916 Dimerisation domain of Zinc Transporter B34_02078 PF01545 Cation efflux family B34_02079 PF02627 Carboxymuconolactone decarboxylase family B34_02080 PF03180 NLPA lipoprotein B34_02081 PF00528 Binding-protein-dependent transport system inner membrane component B34_02082 PF00005 ABC transporter B34_02082 PF09383 NIL domain B34_02083 PF02036 SCP-2 sterol transfer family B34_02084 PF00085 Thioredoxin B34_02085 PF01751 Toprim domain B34_02086 PF10830 Protein of unknown function (DUF2553) B34_02087 PF01597 Glycine cleavage H-protein B34_02088 PF03960 ArsC family B34_02089 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B34_02089 PF02770 Acyl-CoA dehydrogenase, middle domain B34_02089 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B34_02090 PF02803 Thiolase, C-terminal domain B34_02090 PF00108 Thiolase, N-terminal domain B34_02091 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain B34_02091 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain B34_02091 PF00378 Enoyl-CoA hydratase/isomerase B34_02092 PF14115 YuzL-like protein B34_02094 PF07875 Coat F domain B34_02095 PF10835 Protein of unknown function (DUF2573) B34_02097 PF00005 ABC transporter B34_02098 PF01032 FecCD transport family B34_02099 PF01032 FecCD transport family B34_02100 PF01497 Periplasmic binding protein B34_02101 PF14039 YusW-like protein B34_02103 PF07943 Penicillin-binding protein 5, C-terminal domain B34_02103 PF00768 D-alanyl-D-alanine carboxypeptidase B34_02104 PF00106 short chain dehydrogenase B34_02105 PF00210 Ferritin-like domain B34_02106 PF13180 PDZ domain B34_02107 PF00072 Response regulator receiver domain B34_02107 PF00486 Transcriptional regulatory protein, C terminal B34_02108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02108 PF00512 His Kinase A (phospho-acceptor) domain B34_02108 PF00672 HAMP domain B34_02110 PF00440 Bacterial regulatory proteins, tetR family B34_02111 PF00206 Lyase B34_02111 PF10415 Fumarase C C-terminus B34_02112 PF13113 Protein of unknown function (DUF3970) B34_02113 PF03323 Bacillus/Clostridium GerA spore germination protein B34_02114 PF03845 Spore germination protein B34_02115 PF05504 Spore germination B3/ GerAC like, C-terminal B34_02117 PF00196 Bacterial regulatory proteins, luxR family B34_02117 PF00072 Response regulator receiver domain B34_02118 PF00672 HAMP domain B34_02118 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02118 PF07730 Histidine kinase B34_02119 PF09922 Cell wall-active antibiotics response 4TMS YvqF B34_02121 PF04012 PspA/IM30 family B34_02123 PF01095 Pectinesterase B34_02124 PF01923 Cobalamin adenosyltransferase B34_02125 PF00106 short chain dehydrogenase B34_02127 PF04166 Pyridoxal phosphate biosynthetic protein PdxA B34_02128 PF00465 Iron-containing alcohol dehydrogenase B34_02129 PF00701 Dihydrodipicolinate synthetase family B34_02130 PF00005 ABC transporter B34_02131 PF01032 FecCD transport family B34_02132 PF01497 Periplasmic binding protein B34_02133 PF00392 Bacterial regulatory proteins, gntR family B34_02133 PF07729 FCD domain B34_02134 PF00106 short chain dehydrogenase B34_02135 PF03473 MOSC domain B34_02135 PF03475 3-alpha domain B34_02136 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_02136 PF03466 LysR substrate binding domain B34_02137 PF00295 Glycosyl hydrolases family 28 B34_02138 PF08666 SAF domain B34_02138 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus B34_02139 PF01232 Mannitol dehydrogenase Rossmann domain B34_02139 PF08125 Mannitol dehydrogenase C-terminal domain B34_02140 PF00356 Bacterial regulatory proteins, lacI family B34_02142 PF02614 Glucuronate isomerase B34_02143 PF00512 His Kinase A (phospho-acceptor) domain B34_02143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02144 PF00486 Transcriptional regulatory protein, C terminal B34_02144 PF00072 Response regulator receiver domain B34_02145 PF00005 ABC transporter B34_02146 PF01032 FecCD transport family B34_02147 PF01032 FecCD transport family B34_02148 PF13520 Amino acid permease B34_02149 PF04307 LexA-binding, inner membrane-associated putative hydrolase B34_02150 PF00884 Sulfatase B34_02151 PF07690 Major Facilitator Superfamily B34_02152 PF00248 Aldo/keto reductase family B34_02153 PF00480 ROK family B34_02154 PF00266 Aminotransferase class-V B34_02156 PF13538 UvrD-like helicase C-terminal domain B34_02157 PF03458 UPF0126 domain B34_02158 PF04229 GrpB protein B34_02158 PF13673 Acetyltransferase (GNAT) domain B34_02160 PF00583 Acetyltransferase (GNAT) family B34_02160 PF13673 Acetyltransferase (GNAT) domain B34_02161 PF02600 Disulfide bond formation protein DsbB B34_02162 PF13462 Thioredoxin B34_02163 PF00403 Heavy-metal-associated domain B34_02164 PF13416 Bacterial extracellular solute-binding protein B34_02165 PF00528 Binding-protein-dependent transport system inner membrane component B34_02166 PF00528 Binding-protein-dependent transport system inner membrane component B34_02167 PF01055 Glycosyl hydrolases family 31 B34_02167 PF13802 Galactose mutarotase-like B34_02168 PF07691 PA14 domain B34_02168 PF01915 Glycosyl hydrolase family 3 C-terminal domain B34_02168 PF14310 Fibronectin type III-like domain B34_02168 PF00933 Glycosyl hydrolase family 3 N terminal domain B34_02169 PF00005 ABC transporter B34_02170 PF00950 ABC 3 transport family B34_02171 PF01297 Zinc-uptake complex component A periplasmic B34_02174 PF01380 SIS domain B34_02174 PF01418 Helix-turn-helix domain, rpiR family B34_02176 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_02176 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_02178 PF01116 Fructose-bisphosphate aldolase class-II B34_02180 PF00403 Heavy-metal-associated domain B34_02181 PF00403 Heavy-metal-associated domain B34_02182 PF02583 Metal-sensitive transcriptional repressor B34_02183 PF01965 DJ-1/PfpI family B34_02184 PF08220 DeoR-like helix-turn-helix domain B34_02184 PF00455 DeoR C terminal sensor domain B34_02185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain B34_02185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain B34_02186 PF01261 Xylose isomerase-like TIM barrel B34_02188 PF00596 Class II Aldolase and Adducin N-terminal domain B34_02189 PF07690 Major Facilitator Superfamily B34_02190 PF07690 Major Facilitator Superfamily B34_02191 PF16715 Cyclodipeptide synthase B34_02192 PF00067 Cytochrome P450 B34_02194 PF01047 MarR family B34_02197 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_02197 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_02198 PF02525 Flavodoxin-like fold B34_02202 PF04545 Sigma-70, region 4 B34_02203 PF12841 YvrJ protein family B34_02204 PF00190 Cupin B34_02205 PF14184 Regulatory protein YrvL B34_02210 PF01471 Putative peptidoglycan binding domain B34_02210 PF01510 N-acetylmuramoyl-L-alanine amidase B34_02213 PF08863 YolD-like protein B34_02219 PF14449 Pre-toxin TG B34_02219 PF04740 LXG domain of WXG superfamily B34_02221 PF01183 Glycosyl hydrolases family 25 B34_02221 PF08239 Bacterial SH3 domain B34_02222 PF04688 SPP1 phage holin B34_02223 PF10779 Haemolysin XhlA B34_02228 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase B34_02228 PF13457 GW (Gly-Tryp) dipeptide domain B34_02230 PF01464 Transglycosylase SLT domain B34_02239 PF00574 Clp protease B34_02242 PF03354 Phage Terminase B34_02248 PF11122 Inner spore coat protein D B34_02276 PF01668 SmpB protein B34_02277 PF08206 Ribonuclease B OB domain B34_02277 PF00773 RNB domain B34_02277 PF00575 S1 RNA binding domain B34_02277 PF17876 Cold shock domain B34_02278 PF12146 Serine aminopeptidase, S33 B34_02279 PF03840 Preprotein translocase SecG subunit B34_02280 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin B34_02280 PF18277 AbrB C-terminal domain B34_02281 PF01381 Helix-turn-helix B34_02284 PF00528 Binding-protein-dependent transport system inner membrane component B34_02285 PF04069 Substrate binding domain of ABC-type glycine betaine transport system B34_02286 PF00528 Binding-protein-dependent transport system inner membrane component B34_02287 PF00571 CBS domain B34_02287 PF00005 ABC transporter B34_02288 PF12802 MarR family B34_02289 PF01914 MarC family integral membrane protein B34_02290 PF01914 MarC family integral membrane protein B34_02292 PF13240 zinc-ribbon domain B34_02294 PF01497 Periplasmic binding protein B34_02296 PF01965 DJ-1/PfpI family B34_02297 PF03952 Enolase, N-terminal domain B34_02297 PF00113 Enolase, C-terminal TIM barrel domain B34_02298 PF06415 BPG-independent PGAM N-terminus (iPGM_N) B34_02298 PF01676 Metalloenzyme superfamily B34_02299 PF00121 Triosephosphate isomerase B34_02300 PF00162 Phosphoglycerate kinase B34_02301 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain B34_02301 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B34_02302 PF04198 Putative sugar-binding domain B34_02303 PF00296 Luciferase-like monooxygenase B34_02304 PF00324 Amino acid permease B34_02306 PF00005 ABC transporter B34_02308 PF02589 LUD domain B34_02309 PF13183 4Fe-4S dicluster domain B34_02309 PF02589 LUD domain B34_02309 PF11870 Domain of unknown function (DUF3390) B34_02310 PF02754 Cysteine-rich domain B34_02311 PF00392 Bacterial regulatory proteins, gntR family B34_02311 PF07729 FCD domain B34_02312 PF02652 L-lactate permease B34_02313 PF04963 Sigma-54 factor, core binding domain B34_02313 PF00309 Sigma-54 factor, Activator interacting domain (AID) B34_02313 PF04552 Sigma-54, DNA binding domain B34_02314 PF09628 YvfG protein B34_02315 PF04230 Polysaccharide pyruvyl transferase B34_02316 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family B34_02317 PF17836 PglD N-terminal domain B34_02317 PF00132 Bacterial transferase hexapeptide (six repeats) B34_02318 PF02397 Bacterial sugar transferase B34_02319 PF14667 Polysaccharide biosynthesis C-terminal domain B34_02319 PF01943 Polysaccharide biosynthesis protein B34_02320 PF00535 Glycosyl transferase family 2 B34_02321 PF04230 Polysaccharide pyruvyl transferase B34_02322 PF00535 Glycosyl transferase family 2 B34_02324 PF00534 Glycosyl transferases group 1 B34_02324 PF13439 Glycosyltransferase Family 4 B34_02325 PF00535 Glycosyl transferase family 2 B34_02326 PF13439 Glycosyltransferase Family 4 B34_02326 PF00534 Glycosyl transferases group 1 B34_02327 PF02719 Polysaccharide biosynthesis protein B34_02328 PF13614 AAA domain B34_02329 PF02706 Chain length determinant protein B34_02330 PF08671 Anti-repressor SinI B34_02330 PF01381 Helix-turn-helix B34_02331 PF02525 Flavodoxin-like fold B34_02333 PF07690 Major Facilitator Superfamily B34_02334 PF01842 ACT domain B34_02334 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B34_02334 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B34_02335 PF04166 Pyridoxal phosphate biosynthetic protein PdxA B34_02336 PF17042 Nucleotide-binding C-terminal domain B34_02336 PF07005 Sugar-binding N-terminal domain B34_02337 PF00465 Iron-containing alcohol dehydrogenase B34_02338 PF00701 Dihydrodipicolinate synthetase family B34_02339 PF13426 PAS domain B34_02339 PF02954 Bacterial regulatory protein, Fis family B34_02339 PF00158 Sigma-54 interaction domain B34_02340 PF01638 HxlR-like helix-turn-helix B34_02341 PF00724 NADH:flavin oxidoreductase / NADH oxidase family B34_02342 PF02435 Levansucrase/Invertase B34_02343 PF08244 Glycosyl hydrolases family 32 C terminal B34_02343 PF00251 Glycosyl hydrolases family 32 N-terminal domain B34_02346 PF00574 Clp protease B34_02347 PF03641 Possible lysine decarboxylase B34_02348 PF03819 MazG nucleotide pyrophosphohydrolase domain B34_02349 PF01966 HD domain B34_02350 PF01740 STAS domain B34_02350 PF00916 Sulfate permease family B34_02351 PF00484 Carbonic anhydrase B34_02352 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B34_02352 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B34_02353 PF01613 Flavin reductase like domain B34_02355 PF00545 ribonuclease B34_02356 PF01337 Barstar (barnase inhibitor) B34_02357 PF00797 N-acetyltransferase B34_02358 PF00381 PTS HPr component phosphorylation site B34_02359 PF14527 WhiA LAGLIDADG-like domain B34_02359 PF02650 WhiA C-terminal HTH domain B34_02359 PF10298 WhiA N-terminal LAGLIDADG-like domain B34_02360 PF01933 Uncharacterised protein family UPF0052 B34_02361 PF03668 P-loop ATPase protein family B34_02362 PF00293 NUDIX domain B34_02363 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_02366 PF01502 Phosphoribosyl-AMP cyclohydrolase B34_02366 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase B34_02367 PF00977 Histidine biosynthesis protein B34_02368 PF00977 Histidine biosynthesis protein B34_02369 PF00117 Glutamine amidotransferase class-I B34_02370 PF00475 Imidazoleglycerol-phosphate dehydratase B34_02371 PF00815 Histidinol dehydrogenase B34_02372 PF01634 ATP phosphoribosyltransferase B34_02373 PF13393 Histidyl-tRNA synthetase B34_02374 PF13529 Peptidase_C39 like family B34_02375 PF03211 Pectate lyase B34_02376 PF14602 Hexapeptide repeat of succinyl-transferase B34_02377 PF13419 Haloacid dehalogenase-like hydrolase B34_02378 PF07670 Nucleoside recognition B34_02379 PF01790 Prolipoprotein diacylglyceryl transferase B34_02380 PF07475 HPr Serine kinase C-terminal domain B34_02380 PF02603 HPr Serine kinase N terminus B34_02381 PF01047 MarR family B34_02382 PF07690 Major Facilitator Superfamily B34_02383 PF00149 Calcineurin-like phosphoesterase B34_02384 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV B34_02385 PF04024 PspC domain B34_02386 PF13349 Putative adhesin B34_02390 PF17760 UvrA interaction domain B34_02390 PF17755 UvrA DNA-binding domain B34_02390 PF00005 ABC transporter B34_02391 PF04851 Type III restriction enzyme, res subunit B34_02391 PF00271 Helicase conserved C-terminal domain B34_02391 PF02151 UvrB/uvrC motif B34_02391 PF12344 Ultra-violet resistance protein B B34_02391 PF17757 UvrB interaction domain B34_02392 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) B34_02394 PF17820 PDZ domain B34_02395 PF17423 Swarming motility protein B34_02396 PF01471 Putative peptidoglycan binding domain B34_02396 PF17820 PDZ domain B34_02396 PF03572 Peptidase family S41 B34_02397 PF00180 Isocitrate/isopropylmalate dehydrogenase B34_02398 PF00877 NlpC/P60 family B34_02399 PF02687 FtsX-like permease family B34_02399 PF18075 FtsX extracellular domain B34_02400 PF00005 ABC transporter B34_02401 PF13442 Cytochrome C oxidase, cbb3-type, subunit III B34_02402 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 B34_02402 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) B34_02403 PF00472 RF-1 domain B34_02403 PF03462 PCRF domain B34_02404 PF01043 SecA preprotein cross-linking domain B34_02404 PF07517 SecA DEAD-like domain B34_02404 PF07516 SecA Wing and Scaffold domain B34_02404 PF02810 SEC-C motif B34_02405 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein B34_02405 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus B34_02408 PF02561 Flagellar protein FliS B34_02409 PF07195 Flagellar hook-associated protein 2 C-terminus B34_02409 PF02465 Flagellar hook-associated protein 2 N-terminus B34_02409 PF07196 Flagellin hook IN motif B34_02410 PF03646 FlaG protein B34_02411 PF00700 Bacterial flagellin C-terminal helical region B34_02411 PF00669 Bacterial flagellin N-terminal helical region B34_02412 PF02599 Global regulator protein family B34_02413 PF02623 FliW protein B34_02415 PF00669 Bacterial flagellin N-terminal helical region B34_02415 PF00700 Bacterial flagellin C-terminal helical region B34_02416 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B34_02416 PF00460 Flagella basal body rod protein B34_02417 PF05130 FlgN protein B34_02418 PF04316 Anti-sigma-28 factor, FlgM B34_02420 PF10719 Late competence development protein ComFB B34_02421 PF00271 Helicase conserved C-terminal domain B34_02421 PF04851 Type III restriction enzyme, res subunit B34_02422 PF02645 Uncharacterised protein, DegV family COG1307 B34_02423 PF00196 Bacterial regulatory proteins, luxR family B34_02423 PF00072 Response regulator receiver domain B34_02424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02424 PF07730 Histidine kinase B34_02424 PF05384 Sensor protein DegS B34_02425 PF09186 Domain of unknown function (DUF1949) B34_02425 PF01205 Uncharacterized protein family UPF0029 B34_02426 PF03816 Cell envelope-related transcriptional attenuator domain B34_02428 PF00953 Glycosyl transferase family 4 B34_02430 PF00535 Glycosyl transferase family 2 B34_02431 PF02706 Chain length determinant protein B34_02432 PF04932 O-Antigen ligase B34_02433 PF16363 GDP-mannose 4,6 dehydratase B34_02434 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain B34_02434 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain B34_02434 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain B34_02435 PF13439 Glycosyltransferase Family 4 B34_02435 PF00534 Glycosyl transferases group 1 B34_02436 PF01943 Polysaccharide biosynthesis protein B34_02436 PF14667 Polysaccharide biosynthesis C-terminal domain B34_02437 PF02397 Bacterial sugar transferase B34_02438 PF04122 Putative cell wall binding repeat 2 B34_02438 PF01520 N-acetylmuramoyl-L-alanine amidase B34_02439 PF04122 Putative cell wall binding repeat 2 B34_02439 PF08486 Stage II sporulation protein B34_02441 PF03816 Cell envelope-related transcriptional attenuator domain B34_02442 PF02350 UDP-N-acetylglucosamine 2-epimerase B34_02443 PF00483 Nucleotidyl transferase B34_02444 PF00005 ABC transporter B34_02445 PF01061 ABC-2 type transporter B34_02446 PF00534 Glycosyl transferases group 1 B34_02446 PF13439 Glycosyltransferase Family 4 B34_02447 PF00534 Glycosyl transferases group 1 B34_02448 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase B34_02452 PF00535 Glycosyl transferase family 2 B34_02452 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase B34_02453 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase B34_02454 PF01467 Cytidylyltransferase-like B34_02455 PF03808 Glycosyl transferase WecB/TagA/CpsF family B34_02456 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase B34_02457 PF05036 Sporulation related domain B34_02457 PF08239 Bacterial SH3 domain B34_02457 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase B34_02458 PF01238 Phosphomannose isomerase type I B34_02459 PF04055 Radical SAM superfamily B34_02460 PF03477 ATP cone domain B34_02460 PF13597 Anaerobic ribonucleoside-triphosphate reductase B34_02461 PF03812 2-keto-3-deoxygluconate permease B34_02462 PF01081 KDPG and KHG aldolase B34_02463 PF00294 pfkB family carbohydrate kinase B34_02464 PF00356 Bacterial regulatory proteins, lacI family B34_02465 PF04962 KduI/IolB family B34_02467 PF08240 Alcohol dehydrogenase GroES-like domain B34_02467 PF00107 Zinc-binding dehydrogenase B34_02467 PF13823 Alcohol dehydrogenase GroES-associated B34_02469 PF00083 Sugar (and other) transporter B34_02470 PF03816 Cell envelope-related transcriptional attenuator domain B34_02472 PF00877 NlpC/P60 family B34_02474 PF09587 Bacterial capsule synthesis protein PGA_cap B34_02475 PF14102 Capsule biosynthesis CapC B34_02476 PF08245 Mur ligase middle domain B34_02477 PF00356 Bacterial regulatory proteins, lacI family B34_02478 PF00294 pfkB family carbohydrate kinase B34_02479 PF05025 RbsD / FucU transport protein family B34_02480 PF00005 ABC transporter B34_02481 PF02653 Branched-chain amino acid transport system / permease component B34_02482 PF13407 Periplasmic binding protein domain B34_02483 PF03306 Alpha-acetolactate decarboxylase B34_02484 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B34_02484 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B34_02484 PF00205 Thiamine pyrophosphate enzyme, central domain B34_02485 PF03466 LysR substrate binding domain B34_02485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_02486 PF00665 Integrase core domain B34_02486 PF13276 HTH-like domain B34_02486 PF13333 Integrase core domain B34_02489 PF13404 AsnC-type helix-turn-helix domain B34_02489 PF01037 Lrp/AsnC ligand binding domain B34_02490 PF02417 Chromate transporter B34_02491 PF02417 Chromate transporter B34_02493 PF02706 Chain length determinant protein B34_02493 PF13807 G-rich domain on putative tyrosine kinase B34_02495 PF04434 SWIM zinc finger B34_02496 PF12419 SNF2 Helicase protein B34_02496 PF00271 Helicase conserved C-terminal domain B34_02496 PF00176 SNF2 family N-terminal domain B34_02499 PF00455 DeoR C terminal sensor domain B34_02499 PF08220 DeoR-like helix-turn-helix domain B34_02500 PF00923 Transaldolase/Fructose-6-phosphate aldolase B34_02501 PF00106 short chain dehydrogenase B34_02502 PF03829 PTS system glucitol/sorbitol-specific IIA component B34_02503 PF07663 Sorbitol phosphotransferase enzyme II C-terminus B34_02503 PF03612 Sorbitol phosphotransferase enzyme II N-terminus B34_02504 PF03608 PTS system enzyme II sorbitol-specific factor B34_02506 PF04198 Putative sugar-binding domain B34_02506 PF13936 Helix-turn-helix domain B34_02507 PF00436 Single-strand binding protein family B34_02509 PF14183 YwpF-like protein B34_02510 PF01741 Large-conductance mechanosensitive channel, MscL B34_02511 PF07977 FabA-like domain B34_02512 PF00460 Flagella basal body rod protein B34_02512 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B34_02513 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B34_02513 PF00460 Flagella basal body rod protein B34_02515 PF12116 Stage III sporulation protein D B34_02516 PF01047 MarR family B34_02517 PF07690 Major Facilitator Superfamily B34_02518 PF01569 PAP2 superfamily B34_02519 PF01368 DHH family B34_02519 PF02833 DHHA2 domain B34_02520 PF05067 Manganese containing catalase B34_02521 PF09844 Uncharacterized conserved protein (COG2071) B34_02522 PF00571 CBS domain B34_02523 PF01544 CorA-like Mg2+ transporter protein B34_02524 PF00571 CBS domain B34_02524 PF01595 Cyclin M transmembrane N-terminal domain B34_02524 PF03471 Transporter associated domain B34_02525 PF00909 Ammonium Transporter Family B34_02526 PF00543 Nitrogen regulatory protein P-II B34_02527 PF00574 Clp protease B34_02528 PF12680 SnoaL-like domain B34_02528 PF08281 Sigma-70, region 4 B34_02528 PF04542 Sigma-70 region 2 B34_02529 PF01551 Peptidase family M23 B34_02530 PF00583 Acetyltransferase (GNAT) family B34_02531 PF17370 Family of unknown function (DUF5392) B34_02532 PF13091 PLD-like domain B34_02532 PF13396 Phospholipase_D-nuclease N-terminal B34_02533 PF07690 Major Facilitator Superfamily B34_02534 PF03621 MbtH-like protein B34_02535 PF00975 Thioesterase domain B34_02535 PF00550 Phosphopantetheine attachment site B34_02535 PF00668 Condensation domain B34_02535 PF13193 AMP-binding enzyme C-terminal domain B34_02535 PF00501 AMP-binding enzyme B34_02536 PF00550 Phosphopantetheine attachment site B34_02536 PF00857 Isochorismatase family B34_02537 PF00501 AMP-binding enzyme B34_02537 PF13193 AMP-binding enzyme C-terminal domain B34_02538 PF00425 chorismate binding enzyme B34_02539 PF00106 short chain dehydrogenase B34_02540 PF00756 Putative esterase B34_02541 PF01032 FecCD transport family B34_02542 PF01032 FecCD transport family B34_02543 PF01497 Periplasmic binding protein B34_02544 PF01497 Periplasmic binding protein B34_02544 PF12833 Helix-turn-helix domain B34_02546 PF13460 NAD(P)H-binding B34_02547 PF02082 Transcriptional regulator B34_02550 PF04055 Radical SAM superfamily B34_02550 PF06463 Molybdenum Cofactor Synthesis C B34_02551 PF02634 FdhD/NarQ family B34_02552 PF07690 Major Facilitator Superfamily B34_02553 PF12838 4Fe-4S dicluster domain B34_02553 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B34_02553 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B34_02553 PF01568 Molydopterin dinucleotide binding domain B34_02553 PF00384 Molybdopterin oxidoreductase B34_02554 PF00092 von Willebrand factor type A domain B34_02555 PF00092 von Willebrand factor type A domain B34_02556 PF08486 Stage II sporulation protein B34_02557 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B34_02558 PF08680 TATA-box binding B34_02559 PF06612 Protein of unknown function (DUF1146) B34_02560 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain B34_02560 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain B34_02561 PF02874 ATP synthase alpha/beta family, beta-barrel domain B34_02561 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain B34_02562 PF00231 ATP synthase B34_02563 PF02874 ATP synthase alpha/beta family, beta-barrel domain B34_02563 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain B34_02563 PF00306 ATP synthase alpha/beta chain, C terminal domain B34_02564 PF00213 ATP synthase delta (OSCP) subunit B34_02565 PF00430 ATP synthase B/B' CF(0) B34_02566 PF00137 ATP synthase subunit C B34_02567 PF00119 ATP synthase A chain B34_02568 PF03899 ATP synthase I chain B34_02570 PF00464 Serine hydroxymethyltransferase B34_02571 PF04260 Protein of unknown function (DUF436) B34_02572 PF02502 Ribose/Galactose Isomerase B34_02573 PF01451 Low molecular weight phosphotyrosine protein phosphatase B34_02574 PF02659 Putative manganese efflux pump B34_02575 PF01300 Telomere recombination B34_02575 PF03481 Putative GTP-binding controlling metal-binding B34_02577 PF09551 Stage II sporulation protein R (spore_II_R) B34_02578 PF07690 Major Facilitator Superfamily B34_02579 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_02579 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_02580 PF05116 Sucrose-6F-phosphate phosphohydrolase B34_02581 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family B34_02582 PF00356 Bacterial regulatory proteins, lacI family B34_02583 PF05175 Methyltransferase small domain B34_02583 PF17827 PrmC N-terminal domain B34_02584 PF03462 PCRF domain B34_02584 PF00472 RF-1 domain B34_02585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_02586 PF13411 MerR HTH family regulatory protein B34_02587 PF03547 Membrane transport protein B34_02588 PF03949 Malic enzyme, NAD binding domain B34_02588 PF00390 Malic enzyme, N-terminal domain B34_02589 PF00265 Thymidine kinase B34_02590 PF01197 Ribosomal protein L31 B34_02591 PF07498 Rho termination factor, N-terminal domain B34_02591 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain B34_02591 PF07497 Rho termination factor, RNA-binding domain B34_02592 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded B34_02593 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B34_02594 PF00923 Transaldolase/Fructose-6-phosphate aldolase B34_02595 PF01116 Fructose-bisphosphate aldolase class-II B34_02596 PF00072 Response regulator receiver domain B34_02597 PF10740 Domain of unknown function (DUF2529) B34_02600 PF13276 HTH-like domain B34_02600 PF13333 Integrase core domain B34_02600 PF00665 Integrase core domain B34_02601 PF00117 Glutamine amidotransferase class-I B34_02601 PF06418 CTP synthase N-terminus B34_02602 PF05066 HB1, ASXL, restriction endonuclease HTH domain B34_02603 PF02770 Acyl-CoA dehydrogenase, middle domain B34_02603 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B34_02603 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B34_02604 PF02770 Acyl-CoA dehydrogenase, middle domain B34_02604 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B34_02604 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B34_02605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain B34_02605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain B34_02606 PF00108 Thiolase, N-terminal domain B34_02606 PF02803 Thiolase, C-terminal domain B34_02607 PF02754 Cysteine-rich domain B34_02607 PF13183 4Fe-4S dicluster domain B34_02608 PF13091 PLD-like domain B34_02610 PF03485 Arginyl tRNA synthetase N terminal domain B34_02610 PF05746 DALR anticodon binding domain B34_02610 PF00750 tRNA synthetases class I (R) B34_02611 PF09148 Domain of unknown function (DUF1934) B34_02612 PF00491 Arginase family B34_02613 PF17284 Spermidine synthase tetramerisation domain B34_02616 PF00912 Transglycosylase B34_02616 PF00905 Penicillin binding protein transpeptidase domain B34_02617 PF08741 YwhD family B34_02618 PF02163 Peptidase family M50 B34_02619 PF01361 Tautomerase enzyme B34_02622 PF01966 HD domain B34_02623 PF07293 Protein of unknown function (DUF1450) B34_02625 PF14154 Domain of unknown function (DUF4306) B34_02626 PF03099 Biotin/lipoate A/B protein ligase family B34_02627 PF01494 FAD binding domain B34_02628 PF07690 Major Facilitator Superfamily B34_02630 PF01361 Tautomerase enzyme B34_02632 PF00171 Aldehyde dehydrogenase family B34_02633 PF09339 IclR helix-turn-helix domain B34_02633 PF01614 Bacterial transcriptional regulator B34_02635 PF01515 Phosphate acetyl/butaryl transferase B34_02637 PF17735 Biofilm surface layer A B34_02638 PF02386 Cation transport protein B34_02639 PF09671 Spore coat protein (Spore_GerQ) B34_02642 PF00005 ABC transporter B34_02644 PF00072 Response regulator receiver domain B34_02644 PF00196 Bacterial regulatory proteins, luxR family B34_02645 PF04241 Protein of unknown function (DUF423) B34_02646 PF00860 Permease family B34_02647 PF17261 Family of unknown function (DUF5327) B34_02648 PF00171 Aldehyde dehydrogenase family B34_02649 PF03167 Uracil DNA glycosylase superfamily B34_02650 PF00535 Glycosyl transferase family 2 B34_02651 PF08543 Phosphomethylpyrimidine kinase B34_02653 PF08244 Glycosyl hydrolases family 32 C terminal B34_02653 PF00251 Glycosyl hydrolases family 32 N-terminal domain B34_02654 PF02378 Phosphotransferase system, EIIC B34_02654 PF00367 phosphotransferase system, EIIB B34_02655 PF00874 PRD domain B34_02655 PF03123 CAT RNA binding domain B34_02658 PF13860 FlgD Ig-like domain B34_02658 PF05922 Peptidase inhibitor I9 B34_02658 PF00082 Subtilase family B34_02658 PF02225 PA domain B34_02660 PF00296 Luciferase-like monooxygenase B34_02662 PF00881 Nitroreductase family B34_02663 PF01546 Peptidase family M20/M25/M40 B34_02663 PF07687 Peptidase dimerisation domain B34_02664 PF01098 Cell cycle protein B34_02665 PF01098 Cell cycle protein B34_02668 PF17368 Spore morphogenesis and germination YwcE B34_02670 PF00583 Acetyltransferase (GNAT) family B34_02671 PF00005 ABC transporter B34_02672 PF00005 ABC transporter B34_02676 PF00196 Bacterial regulatory proteins, luxR family B34_02676 PF00072 Response regulator receiver domain B34_02678 PF03626 Prokaryotic Cytochrome C oxidase subunit IV B34_02679 PF00510 Cytochrome c oxidase subunit III B34_02680 PF00115 Cytochrome C and Quinol oxidase polypeptide I B34_02681 PF00116 Cytochrome C oxidase subunit II, periplasmic domain B34_02681 PF02790 Cytochrome C oxidase subunit II, transmembrane domain B34_02682 PF16363 GDP-mannose 4,6 dehydratase B34_02686 PF03358 NADPH-dependent FMN reductase B34_02687 PF04341 Protein of unknown function, DUF485 B34_02688 PF00474 Sodium:solute symporter family B34_02689 PF02782 FGGY family of carbohydrate kinases, C-terminal domain B34_02689 PF00370 FGGY family of carbohydrate kinases, N-terminal domain B34_02690 PF01261 Xylose isomerase-like TIM barrel B34_02691 PF00480 ROK family B34_02692 PF02581 Thiamine monophosphate synthase B34_02693 PF02110 Hydroxyethylthiazole kinase family B34_02694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_02694 PF03466 LysR substrate binding domain B34_02697 PF03788 LrgA family B34_02698 PF04172 LrgB-like family B34_02700 PF00474 Sodium:solute symporter family B34_02701 PF17785 PUA-like domain B34_02701 PF10672 S-adenosylmethionine-dependent methyltransferase B34_02702 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_02703 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B34_02703 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B34_02704 PF01501 Glycosyl transferase family 8 B34_02707 PF07730 Histidine kinase B34_02707 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02708 PF00072 Response regulator receiver domain B34_02708 PF00196 Bacterial regulatory proteins, luxR family B34_02709 PF03176 MMPL family B34_02710 PF09529 Integral membrane protein (intg_mem_TP0381) B34_02711 PF07690 Major Facilitator Superfamily B34_02712 PF13378 Enolase C-terminal domain-like B34_02712 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain B34_02713 PF01081 KDPG and KHG aldolase B34_02714 PF00294 pfkB family carbohydrate kinase B34_02715 PF09339 IclR helix-turn-helix domain B34_02715 PF01614 Bacterial transcriptional regulator B34_02716 PF02225 PA domain B34_02716 PF04389 Peptidase family M28 B34_02717 PF07690 Major Facilitator Superfamily B34_02719 PF04607 Region found in RelA / SpoT proteins B34_02721 PF12459 D-Ala-teichoic acid biosynthesis protein B34_02722 PF13193 AMP-binding enzyme C-terminal domain B34_02722 PF00501 AMP-binding enzyme B34_02723 PF03062 MBOAT, membrane-bound O-acyltransferase family B34_02724 PF00550 Phosphopantetheine attachment site B34_02725 PF04914 DltD protein B34_02726 PF01063 Amino-transferase class IV B34_02727 PF07690 Major Facilitator Superfamily B34_02728 PF02056 Family 4 glycosyl hydrolase B34_02728 PF11975 Family 4 glycosyl hydrolase C-terminal domain B34_02729 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit B34_02730 PF02378 Phosphotransferase system, EIIC B34_02731 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_02732 PF05043 Mga helix-turn-helix domain B34_02732 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_02732 PF08279 HTH domain B34_02732 PF00874 PRD domain B34_02734 PF02245 Methylpurine-DNA glycosylase (MPG) B34_02735 PF00392 Bacterial regulatory proteins, gntR family B34_02735 PF07729 FCD domain B34_02736 PF00285 Citrate synthase, C-terminal domain B34_02737 PF03972 MmgE/PrpD family B34_02741 PF00005 ABC transporter B34_02741 PF00664 ABC transporter transmembrane region B34_02742 PF13472 GDSL-like Lipase/Acylhydrolase family B34_02743 PF17735 Biofilm surface layer A B34_02744 PF17735 Biofilm surface layer A B34_02745 PF07690 Major Facilitator Superfamily B34_02746 PF12679 ABC-2 family transporter protein B34_02747 PF00005 ABC transporter B34_02747 PF13732 Domain of unknown function (DUF4162) B34_02748 PF13396 Phospholipase_D-nuclease N-terminal B34_02751 PF08281 Sigma-70, region 4 B34_02751 PF04542 Sigma-70 region 2 B34_02752 PF07690 Major Facilitator Superfamily B34_02753 PF06628 Catalase-related immune-responsive B34_02753 PF00199 Catalase B34_02754 PF06628 Catalase-related immune-responsive B34_02754 PF00199 Catalase B34_02755 PF01475 Ferric uptake regulator family B34_02757 PF12679 ABC-2 family transporter protein B34_02758 PF00005 ABC transporter B34_02761 PF00005 ABC transporter B34_02765 PF00082 Subtilase family B34_02766 PF00005 ABC transporter B34_02766 PF00664 ABC transporter transmembrane region B34_02766 PF03412 Peptidase C39 family B34_02768 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) B34_02769 PF14867 Lantibiotic alpha B34_02771 PF00544 Pectate lyase B34_02772 PF01256 Carbohydrate kinase B34_02773 PF00005 ABC transporter B34_02773 PF00664 ABC transporter transmembrane region B34_02774 PF00005 ABC transporter B34_02774 PF00664 ABC transporter transmembrane region B34_02775 PF02322 Cytochrome bd terminal oxidase subunit II B34_02776 PF01654 Cytochrome bd terminal oxidase subunit I B34_02777 PF01226 Formate/nitrite transporter B34_02779 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B34_02779 PF03949 Malic enzyme, NAD binding domain B34_02779 PF00390 Malic enzyme, N-terminal domain B34_02780 PF03553 Na+/H+ antiporter family B34_02781 PF10415 Fumarase C C-terminus B34_02781 PF00206 Lyase B34_02782 PF17763 Glutaminase/Asparaginase C-terminal domain B34_02782 PF00710 Asparaginase, N-terminal B34_02783 PF01381 Helix-turn-helix B34_02784 PF10282 Lactonase, 7-bladed beta-propeller B34_02785 PF00072 Response regulator receiver domain B34_02785 PF00486 Transcriptional regulatory protein, C terminal B34_02786 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02787 PF00005 ABC transporter B34_02788 PF02687 FtsX-like permease family B34_02789 PF06486 Protein of unknown function (DUF1093) B34_02792 PF01522 Polysaccharide deacetylase B34_02793 PF00392 Bacterial regulatory proteins, gntR family B34_02793 PF00155 Aminotransferase class I and II B34_02794 PF00155 Aminotransferase class I and II B34_02794 PF00392 Bacterial regulatory proteins, gntR family B34_02795 PF03552 Cellulose synthase B34_02795 PF07238 PilZ domain B34_02795 PF00535 Glycosyl transferase family 2 B34_02796 PF03390 2-hydroxycarboxylate transporter family B34_02797 PF03009 Glycerophosphoryl diester phosphodiesterase family B34_02798 PF05901 Excalibur calcium-binding domain B34_02800 PF00884 Sulfatase B34_02801 PF17353 Family of unknown function (DUF5381) B34_02802 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) B34_02802 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 B34_02803 PF01316 Arginine repressor, DNA binding domain B34_02803 PF02863 Arginine repressor, C-terminal domain B34_02805 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain B34_02805 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain B34_02806 PF13520 Amino acid permease B34_02807 PF00696 Amino acid kinase family B34_02809 PF00232 Glycosyl hydrolase family 1 B34_02810 PF02378 Phosphotransferase system, EIIC B34_02812 PF04542 Sigma-70 region 2 B34_02812 PF08281 Sigma-70, region 4 B34_02813 PF04055 Radical SAM superfamily B34_02817 PF01434 Peptidase family M41 B34_02817 PF06480 FtsH Extracellular B34_02817 PF17862 AAA+ lid domain B34_02817 PF00004 ATPase family associated with various cellular activities (AAA) B34_02818 PF07687 Peptidase dimerisation domain B34_02818 PF01546 Peptidase family M20/M25/M40 B34_02819 PF08244 Glycosyl hydrolases family 32 C terminal B34_02819 PF00251 Glycosyl hydrolases family 32 N-terminal domain B34_02820 PF01306 LacY proton/sugar symporter B34_02821 PF00528 Binding-protein-dependent transport system inner membrane component B34_02822 PF00528 Binding-protein-dependent transport system inner membrane component B34_02824 PF00356 Bacterial regulatory proteins, lacI family B34_02828 PF01717 Cobalamin-independent synthase, Catalytic domain B34_02829 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase B34_02830 PF00535 Glycosyl transferase family 2 B34_02831 PF01370 NAD dependent epimerase/dehydratase family B34_02833 PF01773 Na+ dependent nucleoside transporter N-terminus B34_02833 PF07662 Na+ dependent nucleoside transporter C-terminus B34_02834 PF00199 Catalase B34_02834 PF18011 C-terminal domain found in long catalases B34_02834 PF06628 Catalase-related immune-responsive B34_02836 PF00232 Glycosyl hydrolase family 1 B34_02837 PF02378 Phosphotransferase system, EIIC B34_02837 PF00367 phosphotransferase system, EIIB B34_02837 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B34_02838 PF00874 PRD domain B34_02838 PF03123 CAT RNA binding domain B34_02839 PF02361 Cobalt transport protein B34_02840 PF00005 ABC transporter B34_02841 PF09819 ABC-type cobalt transport system, permease component B34_02842 PF03070 TENA/THI-4/PQQC family B34_02844 PF00463 Isocitrate lyase family B34_02845 PF01274 Malate synthase B34_02847 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase B34_02848 PF02687 FtsX-like permease family B34_02849 PF00005 ABC transporter B34_02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02851 PF00486 Transcriptional regulatory protein, C terminal B34_02851 PF00072 Response regulator receiver domain B34_02852 PF00232 Glycosyl hydrolase family 1 B34_02853 PF02378 Phosphotransferase system, EIIC B34_02853 PF00367 phosphotransferase system, EIIB B34_02853 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B34_02855 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family B34_02858 PF04616 Glycosyl hydrolases family 43 B34_02858 PF16369 C-terminal lipocalin-like domain B34_02859 PF00271 Helicase conserved C-terminal domain B34_02859 PF00270 DEAD/DEAH box helicase B34_02859 PF03880 DbpA RNA binding domain B34_02865 PF00591 Glycosyl transferase family, a/b domain B34_02865 PF02885 Glycosyl transferase family, helical bundle domain B34_02865 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain B34_02866 PF01773 Na+ dependent nucleoside transporter N-terminus B34_02866 PF07662 Na+ dependent nucleoside transporter C-terminus B34_02867 PF01791 DeoC/LacD family aldolase B34_02868 PF04198 Putative sugar-binding domain B34_02871 PF00990 Diguanylate cyclase, GGDEF domain B34_02872 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) B34_02875 PF03170 Bacterial cellulose synthase subunit B34_02876 PF00155 Aminotransferase class I and II B34_02879 PF07478 D-ala D-ala ligase C-terminus B34_02881 PF01116 Fructose-bisphosphate aldolase class-II B34_02882 PF01261 Xylose isomerase-like TIM barrel B34_02883 PF01261 Xylose isomerase-like TIM barrel B34_02884 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_02884 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_02885 PF07690 Major Facilitator Superfamily B34_02886 PF01261 Xylose isomerase-like TIM barrel B34_02887 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B34_02887 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B34_02887 PF00205 Thiamine pyrophosphate enzyme, central domain B34_02888 PF00294 pfkB family carbohydrate kinase B34_02889 PF04962 KduI/IolB family B34_02890 PF00171 Aldehyde dehydrogenase family B34_02891 PF00455 DeoR C terminal sensor domain B34_02891 PF08220 DeoR-like helix-turn-helix domain B34_02892 PF00248 Aldo/keto reductase family B34_02893 PF03009 Glycerophosphoryl diester phosphodiesterase family B34_02894 PF07690 Major Facilitator Superfamily B34_02895 PF00183 Hsp90 protein B34_02896 PF12848 ABC transporter B34_02896 PF00005 ABC transporter B34_02901 PF01497 Periplasmic binding protein B34_02904 PF07664 Ferrous iron transport protein B C terminus B34_02904 PF17910 FeoB cytosolic helical domain B34_02904 PF02421 Ferrous iron transport protein B B34_02904 PF07670 Nucleoside recognition B34_02906 PF01757 Acyltransferase family B34_02907 PF02687 FtsX-like permease family B34_02908 PF00005 ABC transporter B34_02909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02910 PF00486 Transcriptional regulatory protein, C terminal B34_02910 PF00072 Response regulator receiver domain B34_02912 PF00672 HAMP domain B34_02912 PF05227 CHASE3 domain B34_02912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_02913 PF01235 Sodium:alanine symporter family B34_02914 PF01262 Alanine dehydrogenase/PNT, C-terminal domain B34_02914 PF05222 Alanine dehydrogenase/PNT, N-terminal domain B34_02915 PF07745 Glycosyl hydrolase family 53 B34_02916 PF08533 Beta-galactosidase C-terminal domain B34_02916 PF08532 Beta-galactosidase trimerisation domain B34_02916 PF02449 Beta-galactosidase B34_02917 PF00528 Binding-protein-dependent transport system inner membrane component B34_02918 PF00528 Binding-protein-dependent transport system inner membrane component B34_02919 PF13416 Bacterial extracellular solute-binding protein B34_02920 PF00356 Bacterial regulatory proteins, lacI family B34_02921 PF10509 Galactokinase galactose-binding signature B34_02921 PF08544 GHMP kinases C terminal B34_02921 PF00288 GHMP kinases N terminal domain B34_02922 PF16363 GDP-mannose 4,6 dehydratase B34_02923 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain B34_02923 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain B34_02924 PF00480 ROK family B34_02924 PF01325 Iron dependent repressor, N-terminal DNA binding domain B34_02925 PF00392 Bacterial regulatory proteins, gntR family B34_02925 PF07729 FCD domain B34_02926 PF02782 FGGY family of carbohydrate kinases, C-terminal domain B34_02926 PF00370 FGGY family of carbohydrate kinases, N-terminal domain B34_02927 PF02447 GntP family permease B34_02928 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase B34_02928 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain B34_02929 PF00465 Iron-containing alcohol dehydrogenase B34_02929 PF00171 Aldehyde dehydrogenase family B34_02930 PF00578 AhpC/TSA family B34_02931 PF13192 Thioredoxin domain B34_02931 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_02936 PF00005 ABC transporter B34_02938 PF07730 Histidine kinase B34_02938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02939 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02939 PF07730 Histidine kinase B34_02940 PF00072 Response regulator receiver domain B34_02940 PF00196 Bacterial regulatory proteins, luxR family B34_02943 PF00005 ABC transporter B34_02943 PF00027 Cyclic nucleotide-binding domain B34_02946 PF02590 Predicted SPOUT methyltransferase B34_02947 PF14116 YyzF-like protein B34_02949 PF00583 Acetyltransferase (GNAT) family B34_02952 PF13180 PDZ domain B34_02953 PF00753 Metallo-beta-lactamase superfamily B34_02954 PF09648 YycH protein B34_02955 PF07435 YycH protein B34_02956 PF13426 PAS domain B34_02956 PF00512 His Kinase A (phospho-acceptor) domain B34_02956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_02956 PF00672 HAMP domain B34_02957 PF00072 Response regulator receiver domain B34_02957 PF00486 Transcriptional regulatory protein, C terminal B34_02962 PF00293 NUDIX domain B34_02963 PF00709 Adenylosuccinate synthetase B34_02965 PF00772 DnaB-like helicase N terminal domain B34_02965 PF03796 DnaB-like helicase C terminal domain B34_02966 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) B34_02968 PF14174 YycC-like protein B34_02969 PF07690 Major Facilitator Superfamily B34_02970 PF01979 Amidohydrolase family B34_02971 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase B34_02973 PF01380 SIS domain B34_02974 PF00367 phosphotransferase system, EIIB B34_02974 PF02378 Phosphotransferase system, EIIC B34_02975 PF03948 Ribosomal protein L9, C-terminal domain B34_02975 PF01281 Ribosomal protein L9, N-terminal domain B34_02976 PF01368 DHH family B34_02976 PF02272 DHHA1 domain B34_02977 PF09991 Predicted membrane protein (DUF2232) B34_02978 PF07875 Coat F domain B34_02979 PF00582 Universal stress protein family B34_02980 PF00916 Sulfate permease family B34_02980 PF01740 STAS domain B34_02981 PF07690 Major Facilitator Superfamily B34_02982 PF01084 Ribosomal protein S18 B34_02983 PF00436 Single-strand binding protein family B34_02984 PF01250 Ribosomal protein S6 B34_02985 PF06071 Protein of unknown function (DUF933) B34_02985 PF01926 50S ribosome-binding GTPase B34_02986 PF06107 Bacterial protein of unknown function (DUF951) B34_02988 PF06866 Protein of unknown function (DUF1256) B34_02989 PF17762 HTH domain found in ParB protein B34_02989 PF02195 ParB-like nuclease domain B34_02990 PF13614 AAA domain B34_02991 PF02627 Carboxymuconolactone decarboxylase family B34_02993 PF02195 ParB-like nuclease domain B34_02993 PF17762 HTH domain found in ParB protein B34_02994 PF02527 rRNA small subunit methyltransferase G B34_02995 PF01134 Glucose inhibited division protein A B34_02995 PF13932 GidA associated domain B34_02996 PF01926 50S ribosome-binding GTPase B34_02996 PF12631 MnmE helical domain B34_02996 PF10396 GTP-binding protein TrmE N-terminus B34_02997 PF14804 Jag N-terminus B34_02997 PF01424 R3H domain B34_02998 PF02096 60Kd inner membrane protein B34_02999 PF00825 Ribonuclease P B34_03000 PF08299 Bacterial dnaA protein helix-turn-helix B34_03000 PF00308 Bacterial dnaA protein B34_03000 PF11638 DnaA N-terminal domain B34_03001 PF02767 DNA polymerase III beta subunit, central domain B34_03001 PF02768 DNA polymerase III beta subunit, C-terminal domain B34_03001 PF00712 DNA polymerase III beta subunit, N-terminal domain B34_03003 PF02463 RecF/RecN/SMC N terminal domain B34_03004 PF00986 DNA gyrase B subunit, carboxyl terminus B34_03004 PF01751 Toprim domain B34_03004 PF00204 DNA gyrase B B34_03004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03005 PF00521 DNA gyrase/topoisomerase IV, subunit A B34_03005 PF03989 DNA gyrase C-terminal domain, beta-propeller B34_03011 PF14175 YaaC-like Protein B34_03012 PF00571 CBS domain B34_03012 PF00478 IMP dehydrogenase / GMP reductase domain B34_03013 PF00768 D-alanyl-D-alanine carboxypeptidase B34_03013 PF07943 Penicillin-binding protein 5, C-terminal domain B34_03014 PF01680 SOR/SNZ family B34_03015 PF01174 SNO glutamine amidotransferase family B34_03016 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) B34_03016 PF02403 Seryl-tRNA synthetase N-terminal domain B34_03017 PF02595 Glycerate kinase family B34_03018 PF02447 GntP family permease B34_03019 PF13556 PucR C-terminal helix-turn-helix domain B34_03019 PF05651 Putative sugar diacid recognition B34_03019 PF17853 GGDEF-like domain B34_03022 PF01712 Deoxynucleoside kinase B34_03023 PF01712 Deoxynucleoside kinase B34_03024 PF00704 Glycosyl hydrolases family 18 B34_03024 PF01476 LysM domain B34_03025 PF00857 Isochorismatase family B34_03026 PF14437 MafB19-like deaminase B34_03027 PF12169 DNA polymerase III subunits gamma and tau domain III B34_03028 PF02575 YbaB/EbfC DNA-binding family B34_03029 PF02132 RecR protein B34_03029 PF13662 Toprim domain B34_03030 PF10704 Protein of unknown function (DUF2508) B34_03031 PF07441 SigmaK-factor processing regulatory protein BofA B34_03037 PF10764 Inhibitor of sigma-G Gin B34_03038 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein B34_03039 PF05816 Toxic anion resistance protein (TelA) B34_03040 PF01276 Orn/Lys/Arg decarboxylase, major domain B34_03040 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain B34_03041 PF02223 Thymidylate kinase B34_03042 PF06153 Cyclic-di-AMP receptor B34_03043 PF03885 Protein of unknown function (DUF327) B34_03044 PF09115 DNA polymerase III, delta subunit, C terminal B34_03045 PF04468 PSP1 C-terminal conserved region B34_03046 PF06156 Initiation control protein YabA B34_03047 PF05175 Methyltransferase small domain B34_03048 PF01541 GIY-YIG catalytic domain B34_03049 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B34_03050 PF18277 AbrB C-terminal domain B34_03050 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin B34_03051 PF08264 Anticodon-binding domain of tRNA B34_03051 PF09334 tRNA synthetases class I (M) B34_03051 PF01588 Putative tRNA binding domain B34_03052 PF01026 TatD related DNase B34_03053 PF03990 G5-linked-Ubiquitin-like domain B34_03053 PF07501 G5 domain B34_03053 PF06725 3D domain B34_03054 PF13662 Toprim domain B34_03054 PF13331 Domain of unknown function (DUF4093) B34_03055 PF00398 Ribosomal RNA adenine dimethylase B34_03056 PF05582 YabG peptidase U57 B34_03057 PF06257 Biofilm formation stimulator VEG B34_03058 PF00269 Small, acid-soluble spore proteins, alpha/beta type B34_03060 PF00288 GHMP kinases N terminal domain B34_03060 PF08544 GHMP kinases C terminal B34_03061 PF00156 Phosphoribosyl transferase domain B34_03061 PF09182 Bacterial purine repressor, N-terminal B34_03062 PF01042 Endoribonuclease L-PSP B34_03063 PF04026 SpoVG B34_03064 PF00132 Bacterial transferase hexapeptide (six repeats) B34_03064 PF00483 Nucleotidyl transferase B34_03065 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase B34_03065 PF14572 Phosphoribosyl synthetase-associated domain B34_03066 PF01386 Ribosomal L25p family B34_03066 PF14693 Ribosomal protein TL5, C-terminal domain B34_03067 PF01195 Peptidyl-tRNA hydrolase B34_03068 PF10955 Protein of unknown function (DUF2757) B34_03069 PF02559 CarD-like/TRCF domain B34_03069 PF00270 DEAD/DEAH box helicase B34_03069 PF00271 Helicase conserved C-terminal domain B34_03069 PF03461 TRCF domain B34_03069 PF17757 UvrB interaction domain B34_03070 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin B34_03070 PF15714 Stage V sporulation protein T C-terminal, transcription factor B34_03071 PF14667 Polysaccharide biosynthesis C-terminal domain B34_03071 PF01943 Polysaccharide biosynthesis protein B34_03072 PF03819 MazG nucleotide pyrophosphohydrolase domain B34_03072 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B34_03073 PF01479 S4 domain B34_03074 PF07873 YabP family B34_03075 PF09578 Spore cortex protein YabQ (Spore_YabQ) B34_03076 PF04977 Septum formation initiator B34_03077 PF00575 S1 RNA binding domain B34_03080 PF07228 Stage II sporulation protein E (SpoIIE) B34_03081 PF00092 von Willebrand factor type A domain B34_03082 PF00069 Protein kinase domain B34_03083 PF09179 TilS substrate binding domain B34_03083 PF11734 TilS substrate C-terminal domain B34_03083 PF01171 PP-loop family B34_03085 PF01434 Peptidase family M41 B34_03085 PF17862 AAA+ lid domain B34_03085 PF06480 FtsH Extracellular B34_03085 PF00004 ATPase family associated with various cellular activities (AAA) B34_03086 PF03309 Type III pantothenate kinase B34_03087 PF01430 Hsp33 protein B34_03088 PF13145 PPIC-type PPIASE domain B34_03089 PF00291 Pyridoxal-phosphate dependent enzyme B34_03090 PF00425 chorismate binding enzyme B34_03090 PF04715 Anthranilate synthase component I, N terminal region B34_03091 PF00117 Glutamine amidotransferase class-I B34_03092 PF01063 Amino-transferase class IV B34_03093 PF00809 Pterin binding enzyme B34_03094 PF02152 Dihydroneopterin aldolase B34_03095 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) B34_03096 PF01381 Helix-turn-helix B34_03097 PF01207 Dihydrouridine synthase (Dus) B34_03098 PF00152 tRNA synthetases class II (D, K and N) B34_03098 PF01336 OB-fold nucleic acid binding domain B34_03114 PF05848 CtsR N-terminal HTH domain B34_03114 PF17727 CtsR C-terminal dimerization domain B34_03115 PF02151 UvrB/uvrC motif B34_03116 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain B34_03117 PF00004 ATPase family associated with various cellular activities (AAA) B34_03117 PF17871 AAA lid domain B34_03117 PF02861 Clp amino terminal domain, pathogenicity island component B34_03117 PF10431 C-terminal, D2-small domain, of ClpB protein B34_03117 PF07724 AAA domain (Cdc48 subfamily) B34_03118 PF18073 Rubredoxin metal binding domain B34_03119 PF10635 DisA bacterial checkpoint controller linker region B34_03119 PF02457 DisA bacterial checkpoint controller nucleotide-binding B34_03121 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase B34_03122 PF02542 YgbB family B34_03123 PF00749 tRNA synthetases class I (E and Q), catalytic domain B34_03124 PF00132 Bacterial transferase hexapeptide (six repeats) B34_03125 PF01406 tRNA synthetases class I (C) catalytic domain B34_03125 PF09190 DALR domain B34_03126 PF00636 Ribonuclease III domain B34_03127 PF00588 SpoU rRNA Methylase family B34_03127 PF08032 RNA 2'-O ribose methyltransferase substrate binding B34_03128 PF05991 YacP-like NYN domain B34_03129 PF08281 Sigma-70, region 4 B34_03129 PF04542 Sigma-70 region 2 B34_03130 PF00584 SecE/Sec61-gamma subunits of protein translocation complex B34_03131 PF00467 KOW motif B34_03131 PF02357 Transcription termination factor nusG B34_03132 PF03946 Ribosomal protein L11, N-terminal domain B34_03132 PF00298 Ribosomal protein L11, RNA binding domain B34_03133 PF00687 Ribosomal protein L1p/L10e family B34_03134 PF00466 Ribosomal protein L10 B34_03135 PF16320 Ribosomal protein L7/L12 dimerisation domain B34_03135 PF00542 Ribosomal protein L7/L12 C-terminal domain B34_03136 PF05175 Methyltransferase small domain B34_03137 PF04561 RNA polymerase Rpb2, domain 2 B34_03137 PF04563 RNA polymerase beta subunit B34_03137 PF04565 RNA polymerase Rpb2, domain 3 B34_03137 PF10385 RNA polymerase beta subunit external 1 domain B34_03137 PF00562 RNA polymerase Rpb2, domain 6 B34_03137 PF04560 RNA polymerase Rpb2, domain 7 B34_03138 PF04983 RNA polymerase Rpb1, domain 3 B34_03138 PF04998 RNA polymerase Rpb1, domain 5 B34_03138 PF00623 RNA polymerase Rpb1, domain 2 B34_03138 PF05000 RNA polymerase Rpb1, domain 4 B34_03138 PF04997 RNA polymerase Rpb1, domain 1 B34_03139 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family B34_03140 PF00164 Ribosomal protein S12/S23 B34_03141 PF00177 Ribosomal protein S7p/S5e B34_03142 PF00009 Elongation factor Tu GTP binding domain B34_03142 PF00679 Elongation factor G C-terminus B34_03142 PF14492 Elongation Factor G, domain II B34_03142 PF03764 Elongation factor G, domain IV B34_03142 PF03144 Elongation factor Tu domain 2 B34_03143 PF03143 Elongation factor Tu C-terminal domain B34_03143 PF03144 Elongation factor Tu domain 2 B34_03143 PF00009 Elongation factor Tu GTP binding domain B34_03144 PF00338 Ribosomal protein S10p/S20e B34_03145 PF00297 Ribosomal protein L3 B34_03146 PF00573 Ribosomal protein L4/L1 family B34_03147 PF00276 Ribosomal protein L23 B34_03148 PF03947 Ribosomal Proteins L2, C-terminal domain B34_03148 PF00181 Ribosomal Proteins L2, RNA binding domain B34_03149 PF00203 Ribosomal protein S19 B34_03150 PF00237 Ribosomal protein L22p/L17e B34_03151 PF00189 Ribosomal protein S3, C-terminal domain B34_03151 PF07650 KH domain B34_03152 PF00252 Ribosomal protein L16p/L10e B34_03153 PF00831 Ribosomal L29 protein B34_03154 PF00366 Ribosomal protein S17 B34_03155 PF00238 Ribosomal protein L14p/L23e B34_03156 PF00467 KOW motif B34_03156 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 B34_03157 PF00673 ribosomal L5P family C-terminus B34_03157 PF00281 Ribosomal protein L5 B34_03158 PF00253 Ribosomal protein S14p/S29e B34_03159 PF00410 Ribosomal protein S8 B34_03160 PF00347 Ribosomal protein L6 B34_03161 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast B34_03162 PF03719 Ribosomal protein S5, C-terminal domain B34_03162 PF00333 Ribosomal protein S5, N-terminal domain B34_03163 PF00327 Ribosomal protein L30p/L7e B34_03164 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A B34_03165 PF00344 SecY translocase B34_03166 PF05191 Adenylate kinase, active site lid B34_03167 PF00557 Metallopeptidase family M24 B34_03169 PF01176 Translation initiation factor 1A / IF-1 B34_03170 PF00444 Ribosomal protein L36 B34_03171 PF00416 Ribosomal protein S13/S18 B34_03172 PF00411 Ribosomal protein S11 B34_03173 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain B34_03173 PF01000 RNA polymerase Rpb3/RpoA insert domain B34_03173 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain B34_03174 PF01196 Ribosomal protein L17 B34_03175 PF00005 ABC transporter B34_03176 PF00005 ABC transporter B34_03177 PF02361 Cobalt transport protein B34_03178 PF01416 tRNA pseudouridine synthase B34_03179 PF00572 Ribosomal protein L13 B34_03180 PF00380 Ribosomal protein S9/S16 B34_03181 PF05163 DinB family B34_03182 PF00082 Subtilase family B34_03185 PF00005 ABC transporter B34_03189 PF00005 ABC transporter B34_03191 PF03412 Peptidase C39 family B34_03191 PF00005 ABC transporter B34_03191 PF00664 ABC transporter transmembrane region B34_03196 PF17203 Single cache domain 3 B34_03196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03196 PF00989 PAS fold B34_03196 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain B34_03200 PF10730 Protein of unknown function (DUF2521) B34_03201 PF01520 N-acetylmuramoyl-L-alanine amidase B34_03202 PF10609 NUBPL iron-transfer P-loop NTPase B34_03203 PF17898 Spore germination GerD central core domain B34_03204 PF14089 KinB-signalling pathway activation in sporulation B34_03205 PF01522 Polysaccharide deacetylase B34_03212 PF00144 Beta-lactamase B34_03214 PF01758 Sodium Bile acid symporter family B34_03215 PF17369 Family of unknown function (DUF5391) B34_03216 PF02567 Phenazine biosynthesis-like protein B34_03217 PF07075 Protein of unknown function (DUF1343) B34_03218 PF01915 Glycosyl hydrolase family 3 C-terminal domain B34_03218 PF00933 Glycosyl hydrolase family 3 N terminal domain B34_03219 PF00144 Beta-lactamase B34_03220 PF00367 phosphotransferase system, EIIB B34_03220 PF02378 Phosphotransferase system, EIIC B34_03221 PF01418 Helix-turn-helix domain, rpiR family B34_03221 PF01380 SIS domain B34_03222 PF01380 SIS domain B34_03223 PF04463 Protein of unknown function (DUF523) B34_03229 PF00491 Arginase family B34_03230 PF08281 Sigma-70, region 4 B34_03230 PF04542 Sigma-70 region 2 B34_03231 PF13490 Putative zinc-finger B34_03232 PF02457 DisA bacterial checkpoint controller nucleotide-binding B34_03233 PF07949 YbbR-like protein B34_03234 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III B34_03234 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II B34_03234 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain B34_03234 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I B34_03235 PF01380 SIS domain B34_03238 PF00005 ABC transporter B34_03239 PF00392 Bacterial regulatory proteins, gntR family B34_03241 PF07690 Major Facilitator Superfamily B34_03243 PF00005 ABC transporter B34_03243 PF00664 ABC transporter transmembrane region B34_03244 PF01323 DSBA-like thioredoxin domain B34_03247 PF04439 Streptomycin adenylyltransferase B34_03249 PF13419 Haloacid dehalogenase-like hydrolase B34_03250 PF00324 Amino acid permease B34_03251 PF03600 Citrate transporter B34_03252 PF03401 Tripartite tricarboxylate transporter family receptor B34_03253 PF08279 HTH domain B34_03253 PF12431 Transcriptional regulator B34_03253 PF00072 Response regulator receiver domain B34_03254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03254 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain B34_03255 PF03466 LysR substrate binding domain B34_03255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_03257 PF07690 Major Facilitator Superfamily B34_03258 PF17334 Minor curli fiber component A B34_03259 PF17340 Family of unknown function (DUF5370) B34_03261 PF03190 Protein of unknown function, DUF255 B34_03262 PF07690 Major Facilitator Superfamily B34_03266 PF02690 Na+/Pi-cotransporter B34_03267 PF05360 yiaA/B two helix domain B34_03272 PF00892 EamA-like transporter family B34_03273 PF02311 AraC-like ligand binding domain B34_03273 PF12833 Helix-turn-helix domain B34_03277 PF00465 Iron-containing alcohol dehydrogenase B34_03278 PF00672 HAMP domain B34_03278 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_03278 PF12729 Four helix bundle sensory module for signal transduction B34_03279 PF13407 Periplasmic binding protein domain B34_03283 PF10710 Protein of unknown function (DUF2512) B34_03284 PF00324 Amino acid permease B34_03285 PF02574 Homocysteine S-methyltransferase B34_03286 PF04794 YdjC-like protein B34_03287 PF02378 Phosphotransferase system, EIIC B34_03287 PF00367 phosphotransferase system, EIIB B34_03287 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B34_03288 PF13411 MerR HTH family regulatory protein B34_03288 PF07739 TipAS antibiotic-recognition domain B34_03289 PF04239 Protein of unknown function (DUF421) B34_03290 PF00132 Bacterial transferase hexapeptide (six repeats) B34_03291 PF10990 Protein of unknown function (DUF2809) B34_03292 PF01235 Sodium:alanine symporter family B34_03293 PF04960 Glutaminase B34_03294 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03295 PF00072 Response regulator receiver domain B34_03295 PF08664 YcbB domain B34_03296 PF13302 Acetyltransferase (GNAT) domain B34_03297 PF05569 BlaR1 peptidase M56 B34_03297 PF00905 Penicillin binding protein transpeptidase domain B34_03298 PF03965 Penicillinase repressor B34_03300 PF09423 PhoD-like phosphatase B34_03300 PF16655 PhoD-like phosphatase, N-terminal domain B34_03301 PF02416 mttA/Hcf106 family B34_03302 PF00902 Sec-independent protein translocase protein (TatC) B34_03303 PF00701 Dihydrodipicolinate synthetase family B34_03304 PF00171 Aldehyde dehydrogenase family B34_03305 PF07690 Major Facilitator Superfamily B34_03306 PF13378 Enolase C-terminal domain-like B34_03307 PF00392 Bacterial regulatory proteins, gntR family B34_03307 PF07729 FCD domain B34_03308 PF08666 SAF domain B34_03308 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus B34_03309 PF00486 Transcriptional regulatory protein, C terminal B34_03309 PF00072 Response regulator receiver domain B34_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03310 PF00512 His Kinase A (phospho-acceptor) domain B34_03311 PF00005 ABC transporter B34_03314 PF13037 Domain of unknown function (DUF3898) B34_03314 PF13039 Protein of unknown function (DUF3900) B34_03315 PF16226 Domain of unknown function (DUF4885) B34_03316 PF01636 Phosphotransferase enzyme family B34_03317 PF01047 MarR family B34_03318 PF00501 AMP-binding enzyme B34_03318 PF13193 AMP-binding enzyme C-terminal domain B34_03322 PF07739 TipAS antibiotic-recognition domain B34_03322 PF13411 MerR HTH family regulatory protein B34_03324 PF03551 Transcriptional regulator PadR-like family B34_03324 PF13847 Methyltransferase domain B34_03326 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein B34_03327 PF00892 EamA-like transporter family B34_03328 PF06271 RDD family B34_03329 PF02810 SEC-C motif B34_03329 PF05225 helix-turn-helix, Psq domain B34_03330 PF00005 ABC transporter B34_03333 PF00486 Transcriptional regulatory protein, C terminal B34_03333 PF00072 Response regulator receiver domain B34_03334 PF00512 His Kinase A (phospho-acceptor) domain B34_03334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03335 PF03466 LysR substrate binding domain B34_03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_03336 PF14552 Tautomerase enzyme B34_03339 PF11611 Domain of unknown function (DUF4352) B34_03339 PF17118 Domain of unknown function (DUF5105) B34_03340 PF03606 C4-dicarboxylate anaerobic carrier B34_03341 PF07687 Peptidase dimerisation domain B34_03341 PF01546 Peptidase family M20/M25/M40 B34_03342 PF00583 Acetyltransferase (GNAT) family B34_03343 PF01425 Amidase B34_03344 PF01432 Peptidase family M3 B34_03344 PF08439 Oligopeptidase F B34_03345 PF04226 Transglycosylase associated protein B34_03347 PF13183 4Fe-4S dicluster domain B34_03347 PF02754 Cysteine-rich domain B34_03348 PF01565 FAD binding domain B34_03348 PF02913 FAD linked oxidases, C-terminal domain B34_03349 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_03350 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit B34_03351 PF02378 Phosphotransferase system, EIIC B34_03352 PF11975 Family 4 glycosyl hydrolase C-terminal domain B34_03352 PF02056 Family 4 glycosyl hydrolase B34_03354 PF04794 YdjC-like protein B34_03355 PF00704 Glycosyl hydrolases family 18 B34_03355 PF00041 Fibronectin type III domain B34_03356 PF06483 Chitinase C B34_03356 PF00704 Glycosyl hydrolases family 18 B34_03357 PF00704 Glycosyl hydrolases family 18 B34_03357 PF06483 Chitinase C B34_03358 PF00089 Trypsin B34_03361 PF16244 Domain of unknown function (DUF4901) B34_03362 PF00581 Rhodanese-like domain B34_03363 PF07486 Cell Wall Hydrolase B34_03364 PF00296 Luciferase-like monooxygenase B34_03365 PF00877 NlpC/P60 family B34_03368 PF13732 Domain of unknown function (DUF4162) B34_03368 PF00005 ABC transporter B34_03369 PF00440 Bacterial regulatory proteins, tetR family B34_03369 PF17932 Tetracyclin repressor-like, C-terminal domain B34_03373 PF02342 TerD domain B34_03374 PF02342 TerD domain B34_03375 PF02342 TerD domain B34_03376 PF03741 Integral membrane protein TerC family B34_03379 PF14266 Putative component of 'biosynthetic module' B34_03380 PF05816 Toxic anion resistance protein (TelA) B34_03381 PF02683 Cytochrome C biogenesis protein transmembrane region B34_03383 PF13411 MerR HTH family regulatory protein B34_03384 PF07690 Major Facilitator Superfamily B34_03385 PF00056 lactate/malate dehydrogenase, NAD binding domain B34_03385 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain B34_03386 PF02652 L-lactate permease B34_03387 PF01810 LysE type translocator B34_03388 PF00324 Amino acid permease B34_03389 PF02540 NAD synthase B34_03390 PF01202 Shikimate kinase B34_03391 PF10127 RNA repair pathway DNA polymerase beta family B34_03392 PF01619 Proline dehydrogenase B34_03393 PF00171 Aldehyde dehydrogenase family B34_03394 PF00474 Sodium:solute symporter family B34_03395 PF13556 PucR C-terminal helix-turn-helix domain B34_03395 PF17853 GGDEF-like domain B34_03396 PF09323 Domain of unknown function (DUF1980) B34_03397 PF03773 Predicted permease B34_03398 PF05448 Acetyl xylan esterase (AXE1) B34_03402 PF00528 Binding-protein-dependent transport system inner membrane component B34_03403 PF00497 Bacterial extracellular solute-binding proteins, family 3 B34_03404 PF02525 Flavodoxin-like fold B34_03406 PF00232 Glycosyl hydrolase family 1 B34_03407 PF11033 Competence protein J (ComJ) B34_03408 PF14040 Deoxyribonuclease NucA/NucB B34_03409 PF00069 Protein kinase domain B34_03410 PF00672 HAMP domain B34_03410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_03410 PF17202 Single cache domain 3 B34_03411 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_03411 PF00672 HAMP domain B34_03411 PF17202 Single cache domain 3 B34_03412 PF04740 LXG domain of WXG superfamily B34_03413 PF01968 Hydantoinase/oxoprolinase B34_03413 PF05378 Hydantoinase/oxoprolinase N-terminal region B34_03414 PF02538 Hydantoinase B/oxoprolinase B34_03416 PF00005 ABC transporter B34_03416 PF08402 TOBE domain B34_03417 PF00528 Binding-protein-dependent transport system inner membrane component B34_03418 PF00528 Binding-protein-dependent transport system inner membrane component B34_03419 PF00501 AMP-binding enzyme B34_03419 PF00550 Phosphopantetheine attachment site B34_03419 PF13193 AMP-binding enzyme C-terminal domain B34_03419 PF00668 Condensation domain B34_03420 PF00550 Phosphopantetheine attachment site B34_03420 PF00668 Condensation domain B34_03420 PF13193 AMP-binding enzyme C-terminal domain B34_03420 PF00501 AMP-binding enzyme B34_03421 PF00975 Thioesterase domain B34_03421 PF00668 Condensation domain B34_03421 PF13193 AMP-binding enzyme C-terminal domain B34_03421 PF00550 Phosphopantetheine attachment site B34_03421 PF00501 AMP-binding enzyme B34_03422 PF00975 Thioesterase domain B34_03423 PF00892 EamA-like transporter family B34_03424 PF00392 Bacterial regulatory proteins, gntR family B34_03424 PF00155 Aminotransferase class I and II B34_03425 PF01648 4'-phosphopantetheinyl transferase superfamily B34_03426 PF00756 Putative esterase B34_03430 PF00005 ABC transporter B34_03434 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_03434 PF00672 HAMP domain B34_03435 PF00005 ABC transporter B34_03436 PF00528 Binding-protein-dependent transport system inner membrane component B34_03437 PF00497 Bacterial extracellular solute-binding proteins, family 3 B34_03438 PF00158 Sigma-54 interaction domain B34_03438 PF02954 Bacterial regulatory protein, Fis family B34_03438 PF13426 PAS domain B34_03439 PF00202 Aminotransferase class-III B34_03440 PF00324 Amino acid permease B34_03441 PF00491 Arginase family B34_03442 PF03466 LysR substrate binding domain B34_03442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_03443 PF02441 Flavoprotein B34_03444 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase B34_03454 PF04740 LXG domain of WXG superfamily B34_03454 PF14449 Pre-toxin TG B34_03458 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03458 PF02743 Cache domain B34_03458 PF06580 Histidine kinase B34_03458 PF00672 HAMP domain B34_03459 PF12833 Helix-turn-helix domain B34_03459 PF00072 Response regulator receiver domain B34_03460 PF13407 Periplasmic binding protein domain B34_03461 PF00005 ABC transporter B34_03462 PF02653 Branched-chain amino acid transport system / permease component B34_03463 PF07690 Major Facilitator Superfamily B34_03464 PF01047 MarR family B34_03464 PF00583 Acetyltransferase (GNAT) family B34_03465 PF08532 Beta-galactosidase trimerisation domain B34_03465 PF08533 Beta-galactosidase C-terminal domain B34_03465 PF02449 Beta-galactosidase B34_03466 PF02333 Phytase B34_03467 PF00854 POT family B34_03468 PF13229 Right handed beta helix region B34_03468 PF12708 Pectate lyase superfamily protein B34_03470 PF03323 Bacillus/Clostridium GerA spore germination protein B34_03471 PF05504 Spore germination B3/ GerAC like, C-terminal B34_03472 PF03845 Spore germination protein B34_03473 PF13411 MerR HTH family regulatory protein B34_03473 PF07739 TipAS antibiotic-recognition domain B34_03475 PF00005 ABC transporter B34_03476 PF02687 FtsX-like permease family B34_03476 PF12704 MacB-like periplasmic core domain B34_03477 PF00072 Response regulator receiver domain B34_03477 PF00486 Transcriptional regulatory protein, C terminal B34_03478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03478 PF00512 His Kinase A (phospho-acceptor) domain B34_03478 PF00672 HAMP domain B34_03479 PF00672 HAMP domain B34_03479 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_03479 PF02743 Cache domain B34_03480 PF00696 Amino acid kinase family B34_03480 PF13840 ACT domain B34_03481 PF01032 FecCD transport family B34_03482 PF01032 FecCD transport family B34_03483 PF00005 ABC transporter B34_03484 PF01497 Periplasmic binding protein B34_03485 PF07690 Major Facilitator Superfamily B34_03486 PF00440 Bacterial regulatory proteins, tetR family B34_03488 PF00881 Nitroreductase family B34_03489 PF03992 Antibiotic biosynthesis monooxygenase B34_03490 PF01022 Bacterial regulatory protein, arsR family B34_03491 PF00392 Bacterial regulatory proteins, gntR family B34_03491 PF00155 Aminotransferase class I and II B34_03492 PF00202 Aminotransferase class-III B34_03493 PF13520 Amino acid permease B34_03494 PF00171 Aldehyde dehydrogenase family B34_03495 PF00892 EamA-like transporter family B34_03497 PF07987 Domain of unkown function (DUF1775) B34_03498 PF05425 Copper resistance protein D B34_03498 PF13115 YtkA-like B34_03498 PF04234 CopC domain B34_03499 PF05573 NosL B34_03499 PF08220 DeoR-like helix-turn-helix domain B34_03500 PF18267 Rubredoxin NAD+ reductase C-terminal domain B34_03500 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_03500 PF04324 BFD-like [2Fe-2S] binding domain B34_03500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain B34_03501 PF00384 Molybdopterin oxidoreductase B34_03501 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B34_03501 PF01568 Molydopterin dinucleotide binding domain B34_03502 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain B34_03502 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_03502 PF18267 Rubredoxin NAD+ reductase C-terminal domain B34_03502 PF01077 Nitrite and sulphite reductase 4Fe-4S domain B34_03502 PF04324 BFD-like [2Fe-2S] binding domain B34_03503 PF00355 Rieske [2Fe-2S] domain B34_03504 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B34_03505 PF00392 Bacterial regulatory proteins, gntR family B34_03505 PF07729 FCD domain B34_03506 PF00939 Sodium:sulfate symporter transmembrane region B34_03507 PF01980 tRNA-methyltransferase O B34_03508 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_03511 PF00456 Transketolase, thiamine diphosphate binding domain B34_03512 PF02780 Transketolase, C-terminal domain B34_03512 PF02779 Transketolase, pyrimidine binding domain B34_03514 PF03746 LamB/YcsF family B34_03515 PF01566 Natural resistance-associated macrophage protein B34_03516 PF07286 Protein of unknown function (DUF1445) B34_03517 PF02682 Carboxyltransferase domain, subdomain C and D B34_03518 PF02626 Carboxyltransferase domain, subdomain A and B B34_03519 PF01614 Bacterial transcriptional regulator B34_03519 PF09339 IclR helix-turn-helix domain B34_03520 PF13472 GDSL-like Lipase/Acylhydrolase family B34_03521 PF02378 Phosphotransferase system, EIIC B34_03521 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_03522 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_03523 PF01232 Mannitol dehydrogenase Rossmann domain B34_03523 PF08125 Mannitol dehydrogenase C-terminal domain B34_03524 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_03524 PF00874 PRD domain B34_03524 PF05043 Mga helix-turn-helix domain B34_03524 PF08279 HTH domain B34_03524 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_03528 PF16242 Pyridoxamine 5'-phosphate oxidase like B34_03529 PF10997 Alternate to MurJ B34_03530 PF03816 Cell envelope-related transcriptional attenuator domain B34_03531 PF12823 Domain of unknown function (DUF3817) B34_03533 PF01037 Lrp/AsnC ligand binding domain B34_03534 PF01751 Toprim domain B34_03534 PF01131 DNA topoisomerase B34_03535 PF13520 Amino acid permease B34_03536 PF00205 Thiamine pyrophosphate enzyme, central domain B34_03536 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B34_03536 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B34_03537 PF18416 N-acetylglucosamine binding protein domain 2 B34_03537 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading B34_03539 PF00665 Integrase core domain B34_03539 PF13276 HTH-like domain B34_03539 PF13333 Integrase core domain B34_03541 PF13302 Acetyltransferase (GNAT) domain B34_03542 PF01566 Natural resistance-associated macrophage protein B34_03543 PF04226 Transglycosylase associated protein B34_03544 PF00206 Lyase B34_03544 PF10415 Fumarase C C-terminus B34_03545 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase B34_03546 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) B34_03547 PF12787 EcsC protein family B34_03549 PF07883 Cupin domain B34_03550 PF00477 Small hydrophilic plant seed protein B34_03550 PF10685 Stress-induced bacterial acidophilic repeat motif B34_03551 PF01594 AI-2E family transporter B34_03552 PF00375 Sodium:dicarboxylate symporter family B34_03553 PF00005 ABC transporter B34_03556 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B34_03556 PF02770 Acyl-CoA dehydrogenase, middle domain B34_03556 PF08028 Acyl-CoA dehydrogenase, C-terminal domain B34_03557 PF13040 Fur-regulated basic protein B B34_03559 PF00085 Thioredoxin B34_03560 PF07478 D-ala D-ala ligase C-terminus B34_03560 PF01820 D-ala D-ala ligase N-terminus B34_03561 PF01225 Mur ligase family, catalytic domain B34_03561 PF02875 Mur ligase family, glutamate ligase domain B34_03561 PF08245 Mur ligase middle domain B34_03562 PF12146 Serine aminopeptidase, S33 B34_03563 PF00271 Helicase conserved C-terminal domain B34_03563 PF00270 DEAD/DEAH box helicase B34_03564 PF03703 Bacterial PH domain B34_03565 PF03703 Bacterial PH domain B34_03566 PF01694 Rhomboid family B34_03568 PF01168 Alanine racemase, N-terminal domain B34_03568 PF00842 Alanine racemase, C-terminal domain B34_03569 PF01402 Ribbon-helix-helix protein, copG family B34_03570 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system B34_03571 PF08678 Rsbr N terminal B34_03571 PF01740 STAS domain B34_03572 PF01740 STAS domain B34_03573 PF13581 Histidine kinase-like ATPase domain B34_03574 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain B34_03574 PF07228 Stage II sporulation protein E (SpoIIE) B34_03575 PF01740 STAS domain B34_03576 PF13581 Histidine kinase-like ATPase domain B34_03577 PF04542 Sigma-70 region 2 B34_03577 PF04539 Sigma-70 region 3 B34_03577 PF04545 Sigma-70, region 4 B34_03578 PF07228 Stage II sporulation protein E (SpoIIE) B34_03579 PF09371 Tex-like protein N-terminal domain B34_03579 PF17674 HHH domain B34_03579 PF00575 S1 RNA binding domain B34_03579 PF16921 Tex protein YqgF-like domain B34_03580 PF00440 Bacterial regulatory proteins, tetR family B34_03581 PF03176 MMPL family B34_03582 PF10263 SprT-like family B34_03590 PF14659 Phage integrase, N-terminal SAM-like domain B34_03590 PF00589 Phage integrase family B34_03591 PF06114 IrrE N-terminal-like domain B34_03592 PF01381 Helix-turn-helix B34_03595 PF06125 Bacterial protein of unknown function (DUF961) B34_03597 PF18106 Rolling Circle replication initiation protein N-terminal domain B34_03597 PF02486 Replication initiation factor B34_03602 PF12642 Conjugative transposon protein TcpC B34_03604 PF12648 TcpE family B34_03606 PF08960 Domain of unknown function (DUF1874) B34_03608 PF00877 NlpC/P60 family B34_03610 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) B34_03612 PF18801 response regulator aspartate phosphatase H, N terminal B34_03616 PF01381 Helix-turn-helix B34_03617 PF00487 Fatty acid desaturase B34_03618 PF00313 'Cold-shock' DNA-binding domain B34_03622 PF01047 MarR family B34_03623 PF00583 Acetyltransferase (GNAT) family B34_03624 PF04299 Putative FMN-binding domain B34_03626 PF01638 HxlR-like helix-turn-helix B34_03627 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) B34_03627 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 B34_03628 PF01810 LysE type translocator B34_03629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_03629 PF03466 LysR substrate binding domain B34_03632 PF04199 Putative cyclase B34_03633 PF00324 Amino acid permease B34_03636 PF08281 Sigma-70, region 4 B34_03636 PF04542 Sigma-70 region 2 B34_03637 PF13739 Deacetylase PdaC B34_03637 PF11738 Protein of unknown function (DUF3298) B34_03638 PF01757 Acyltransferase family B34_03639 PF07690 Major Facilitator Superfamily B34_03640 PF06580 Histidine kinase B34_03640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_03641 PF04397 LytTr DNA-binding domain B34_03641 PF00072 Response regulator receiver domain B34_03642 PF04650 YSIRK type signal peptide B34_03642 PF10425 C-terminus of bacterial fibrinogen-binding adhesin B34_03642 PF17210 SdrD B-like domain B34_03642 PF00746 LPXTG cell wall anchor motif B34_03642 PF17961 Bacterial Ig domain B34_03643 PF04203 Sortase domain B34_03644 PF00083 Sugar (and other) transporter B34_03652 PF00586 AIR synthase related protein, N-terminal domain B34_03652 PF02769 AIR synthase related protein, C-terminal domain B34_03653 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE B34_03654 PF00814 Glycoprotease family B34_03655 PF00583 Acetyltransferase (GNAT) family B34_03656 PF00814 Glycoprotease family B34_03657 PF12848 ABC transporter B34_03657 PF16326 ABC transporter C-terminal domain B34_03657 PF00005 ABC transporter B34_03658 PF01967 MoaC family B34_03659 PF02629 CoA binding domain B34_03659 PF06971 Putative DNA-binding protein N-terminus B34_03660 PF02416 mttA/Hcf106 family B34_03661 PF00902 Sec-independent protein translocase protein (TatC) B34_03662 PF14146 Domain of unknown function (DUF4305) B34_03663 PF02517 CPBP intramembrane metalloprotease B34_03664 PF00166 Chaperonin 10 Kd subunit B34_03665 PF00118 TCP-1/cpn60 chaperonin family B34_03669 PF08863 YolD-like protein B34_03671 PF04294 VanW like protein B34_03672 PF10787 Uncharacterised protein from bacillus cereus group B34_03674 PF02586 SOS response associated peptidase (SRAP) B34_03675 PF00440 Bacterial regulatory proteins, tetR family B34_03675 PF17933 Tetracyclin repressor-like, C-terminal domain B34_03676 PF00391 PEP-utilising enzyme, mobile domain B34_03676 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain B34_03678 PF04343 Protein of unknown function, DUF488 B34_03679 PF00106 short chain dehydrogenase B34_03680 PF00135 Carboxylesterase family B34_03681 PF07690 Major Facilitator Superfamily B34_03682 PF04012 PspA/IM30 family B34_03683 PF08271 TFIIB zinc-binding B34_03684 PF04536 TPM domain B34_03685 PF13421 SPFH domain-Band 7 family B34_03687 PF01978 Sugar-specific transcriptional regulator TrmB B34_03687 PF11495 Archaeal transcriptional regulator TrmB B34_03688 PF01810 LysE type translocator B34_03689 PF06803 Protein of unknown function (DUF1232) B34_03690 PF01098 Cell cycle protein B34_03691 PF01098 Cell cycle protein B34_03695 PF01522 Polysaccharide deacetylase B34_03695 PF11738 Protein of unknown function (DUF3298) B34_03695 PF13739 Deacetylase PdaC B34_03696 PF00128 Alpha amylase, catalytic domain B34_03696 PF09154 Domain of unknown function (DUF1939) B34_03698 PF00356 Bacterial regulatory proteins, lacI family B34_03699 PF00128 Alpha amylase, catalytic domain B34_03699 PF02903 Alpha amylase, N-terminal ig-like domain B34_03700 PF13416 Bacterial extracellular solute-binding protein B34_03701 PF00528 Binding-protein-dependent transport system inner membrane component B34_03702 PF00528 Binding-protein-dependent transport system inner membrane component B34_03703 PF06691 Protein of unknown function (DUF1189) B34_03704 PF03636 Glycosyl hydrolase family 65, N-terminal domain B34_03704 PF03632 Glycosyl hydrolase family 65 central catalytic domain B34_03704 PF03633 Glycosyl hydrolase family 65, C-terminal domain B34_03705 PF00128 Alpha amylase, catalytic domain B34_03705 PF16657 Maltogenic Amylase, C-terminal domain B34_03706 PF13419 Haloacid dehalogenase-like hydrolase B34_03707 PF01479 S4 domain B34_03707 PF00579 tRNA synthetases class I (W and Y) B34_03708 PF01047 MarR family B34_03711 PF03330 Lytic transglycolase B34_03712 PF07676 WD40-like Beta Propeller Repeat B34_03713 PF13170 Protein of unknown function (DUF4003) B34_03716 PF10502 Signal peptidase, peptidase S26 B34_03718 PF13460 NAD(P)H-binding B34_03719 PF12833 Helix-turn-helix domain B34_03720 PF07731 Multicopper oxidase B34_03720 PF00394 Multicopper oxidase B34_03720 PF07732 Multicopper oxidase B34_03723 PF16916 Dimerisation domain of Zinc Transporter B34_03723 PF01545 Cation efflux family B34_03724 PF17863 AAA lid domain B34_03724 PF07726 ATPase family associated with various cellular activities (AAA) B34_03725 PF01882 Protein of unknown function DUF58 B34_03726 PF11992 Domain of unknown function (DUF3488) B34_03726 PF13559 Domain of unknown function (DUF4129) B34_03726 PF01841 Transglutaminase-like superfamily B34_03727 PF02540 NAD synthase B34_03727 PF00117 Glutamine amidotransferase class-I B34_03727 PF00958 GMP synthase C terminal domain B34_03728 PF00860 Permease family B34_03730 PF13076 Fur-regulated basic protein A B34_03731 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) B34_03732 PF14044 NETI protein B34_03733 PF00731 AIR carboxylase B34_03734 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain B34_03734 PF02222 ATP-grasp domain B34_03735 PF10397 Adenylosuccinate lyase C-terminus B34_03735 PF00206 Lyase B34_03736 PF01259 SAICAR synthetase B34_03737 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase B34_03739 PF00586 AIR synthase related protein, N-terminal domain B34_03739 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain B34_03739 PF02769 AIR synthase related protein, C-terminal domain B34_03740 PF00156 Phosphoribosyl transferase domain B34_03741 PF00586 AIR synthase related protein, N-terminal domain B34_03741 PF02769 AIR synthase related protein, C-terminal domain B34_03742 PF00551 Formyl transferase B34_03743 PF02142 MGS-like domain B34_03743 PF01808 AICARFT/IMPCHase bienzyme B34_03744 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain B34_03744 PF02844 Phosphoribosylglycinamide synthetase, N domain B34_03744 PF02843 Phosphoribosylglycinamide synthetase, C domain B34_03746 PF00067 Cytochrome P450 B34_03750 PF11127 Protein of unknown function (DUF2892) B34_03751 PF01979 Amidohydrolase family B34_03751 PF13382 Adenine deaminase C-terminal domain B34_03752 PF17479 Protein of unknown function (DUF3048) C-terminal domain B34_03752 PF11258 Protein of unknown function (DUF3048) N-terminal domain B34_03753 PF01371 Trp repressor protein B34_03754 PF01884 PcrB family B34_03755 PF13361 UvrD-like helicase C-terminal domain B34_03755 PF00580 UvrD/REP helicase N-terminal domain B34_03756 PF01653 NAD-dependent DNA ligase adenylation domain B34_03756 PF00533 BRCA1 C Terminus (BRCT) domain B34_03756 PF12826 Helix-hairpin-helix motif B34_03756 PF03119 NAD-dependent DNA ligase C4 zinc finger domain B34_03756 PF03120 NAD-dependent DNA ligase OB-fold domain B34_03757 PF07537 CamS sex pheromone cAM373 precursor B34_03758 PF14503 YhfZ C-terminal domain B34_03758 PF14502 Helix-turn-helix domain B34_03760 PF10941 Protein of unknown function DUF2620 B34_03761 PF10797 Protein of unknown function B34_03762 PF02126 Phosphotriesterase family B34_03763 PF00155 Aminotransferase class I and II B34_03764 PF01676 Metalloenzyme superfamily B34_03765 PF01168 Alanine racemase, N-terminal domain B34_03766 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase B34_03767 PF02308 MgtC family B34_03768 PF00474 Sodium:solute symporter family B34_03770 PF02686 Glu-tRNAGln amidotransferase C subunit B34_03771 PF01425 Amidase B34_03772 PF02934 GatB/GatE catalytic domain B34_03772 PF02637 GatB domain B34_03775 PF02156 Glycosyl hydrolase family 26 B34_03776 PF00440 Bacterial regulatory proteins, tetR family B34_03777 PF00873 AcrB/AcrD/AcrF family B34_03779 PF13302 Acetyltransferase (GNAT) domain B34_03780 PF01156 Inosine-uridine preferring nucleoside hydrolase B34_03781 PF00781 Diacylglycerol kinase catalytic domain B34_03782 PF01938 TRAM domain B34_03782 PF05958 tRNA (Uracil-5-)-methyltransferase B34_03784 PF02378 Phosphotransferase system, EIIC B34_03784 PF00367 phosphotransferase system, EIIB B34_03784 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B34_03785 PF00232 Glycosyl hydrolase family 1 B34_03786 PF00874 PRD domain B34_03786 PF03123 CAT RNA binding domain B34_03787 PF18801 response regulator aspartate phosphatase H, N terminal B34_03791 PF01709 Transcriptional regulator B34_03792 PF01381 Helix-turn-helix B34_03794 PF00171 Aldehyde dehydrogenase family B34_03795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_03796 PF00939 Sodium:sulfate symporter transmembrane region B34_03797 PF16326 ABC transporter C-terminal domain B34_03797 PF12848 ABC transporter B34_03797 PF00005 ABC transporter B34_03799 PF02649 Type I GTP cyclohydrolase folE2 B34_03803 PF02492 CobW/HypB/UreG, nucleotide-binding domain B34_03803 PF07683 Cobalamin synthesis protein cobW C-terminal domain B34_03804 PF03744 6-carboxyhexanoate--CoA ligase B34_03805 PF00202 Aminotransferase class-III B34_03806 PF00155 Aminotransferase class I and II B34_03808 PF04055 Radical SAM superfamily B34_03808 PF06968 Biotin and Thiamin Synthesis associated domain B34_03809 PF00067 Cytochrome P450 B34_03811 PF13411 MerR HTH family regulatory protein B34_03812 PF07690 Major Facilitator Superfamily B34_03813 PF00005 ABC transporter B34_03813 PF12848 ABC transporter B34_03814 PF00271 Helicase conserved C-terminal domain B34_03814 PF00270 DEAD/DEAH box helicase B34_03815 PF00107 Zinc-binding dehydrogenase B34_03815 PF16884 N-terminal domain of oxidoreductase B34_03816 PF11181 Heat induced stress protein YflT B34_03817 PF00939 Sodium:sulfate symporter transmembrane region B34_03820 PF00753 Metallo-beta-lactamase superfamily B34_03822 PF02898 Nitric oxide synthase, oxygenase domain B34_03823 PF13630 SdpI/YhfL protein family B34_03823 PF07853 Protein of unknown function (DUF1648) B34_03824 PF01022 Bacterial regulatory protein, arsR family B34_03825 PF00708 Acylphosphatase B34_03826 PF03475 3-alpha domain B34_03826 PF03473 MOSC domain B34_03827 PF11121 Protein of unknown function (DUF2639) B34_03829 PF00557 Metallopeptidase family M24 B34_03830 PF00884 Sulfatase B34_03831 PF09350 Domain of unknown function (DUF1992) B34_03832 PF01235 Sodium:alanine symporter family B34_03833 PF02378 Phosphotransferase system, EIIC B34_03833 PF00367 phosphotransferase system, EIIB B34_03834 PF16657 Maltogenic Amylase, C-terminal domain B34_03834 PF00128 Alpha amylase, catalytic domain B34_03835 PF07702 UTRA domain B34_03835 PF00392 Bacterial regulatory proteins, gntR family B34_03840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family B34_03841 PF00132 Bacterial transferase hexapeptide (six repeats) B34_03842 PF01370 NAD dependent epimerase/dehydratase family B34_03844 PF00535 Glycosyl transferase family 2 B34_03845 PF00535 Glycosyl transferase family 2 B34_03845 PF13181 Tetratricopeptide repeat B34_03846 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family B34_03847 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_03847 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_03848 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain B34_03848 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain B34_03848 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain B34_03850 PF01638 HxlR-like helix-turn-helix B34_03851 PF00881 Nitroreductase family B34_03852 PF02872 5'-nucleotidase, C-terminal domain B34_03852 PF00149 Calcineurin-like phosphoesterase B34_03853 PF01965 DJ-1/PfpI family B34_03854 PF06569 Protein of unknown function (DUF1128) B34_03855 PF01235 Sodium:alanine symporter family B34_03856 PF01451 Low molecular weight phosphotyrosine protein phosphatase B34_03858 PF03631 Virulence factor BrkB B34_03860 PF07690 Major Facilitator Superfamily B34_03862 PF01699 Sodium/calcium exchanger protein B34_03863 PF14167 YfkD-like protein B34_03864 PF08756 YfkB-like domain B34_03864 PF04055 Radical SAM superfamily B34_03866 PF01522 Polysaccharide deacetylase B34_03867 PF00465 Iron-containing alcohol dehydrogenase B34_03869 PF01544 CorA-like Mg2+ transporter protein B34_03870 PF00730 HhH-GPD superfamily base excision DNA repair protein B34_03871 PF01938 TRAM domain B34_03871 PF05958 tRNA (Uracil-5-)-methyltransferase B34_03876 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase B34_03878 PF10925 Protein of unknown function (DUF2680) B34_03879 PF07690 Major Facilitator Superfamily B34_03880 PF02378 Phosphotransferase system, EIIC B34_03880 PF00367 phosphotransferase system, EIIB B34_03881 PF03123 CAT RNA binding domain B34_03881 PF00874 PRD domain B34_03884 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) B34_03885 PF00361 Proton-conducting membrane transporter B34_03885 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus B34_03886 PF10057 Uncharacterized conserved protein (DUF2294) B34_03888 PF00676 Dehydrogenase E1 component B34_03889 PF02779 Transketolase, pyrimidine binding domain B34_03889 PF02780 Transketolase, C-terminal domain B34_03890 PF02817 e3 binding domain B34_03890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) B34_03890 PF00364 Biotin-requiring enzyme B34_03891 PF07992 Pyridine nucleotide-disulphide oxidoreductase B34_03891 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B34_03892 PF02954 Bacterial regulatory protein, Fis family B34_03892 PF01590 GAF domain B34_03892 PF00158 Sigma-54 interaction domain B34_03893 PF02694 Uncharacterised BCR, YnfA/UPF0060 family B34_03894 PF02056 Family 4 glycosyl hydrolase B34_03894 PF11975 Family 4 glycosyl hydrolase C-terminal domain B34_03895 PF01380 SIS domain B34_03895 PF01418 Helix-turn-helix domain, rpiR family B34_03896 PF00367 phosphotransferase system, EIIB B34_03896 PF02378 Phosphotransferase system, EIIC B34_03899 PF01638 HxlR-like helix-turn-helix B34_03900 PF07681 DoxX B34_03901 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_03902 PF04616 Glycosyl hydrolases family 43 B34_03902 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain B34_03903 PF04616 Glycosyl hydrolases family 43 B34_03903 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain B34_03904 PF12833 Helix-turn-helix domain B34_03904 PF02311 AraC-like ligand binding domain B34_03905 PF13416 Bacterial extracellular solute-binding protein B34_03906 PF13416 Bacterial extracellular solute-binding protein B34_03907 PF02525 Flavodoxin-like fold B34_03908 PF00293 NUDIX domain B34_03909 PF12867 DinB superfamily B34_03910 PF09924 Uncharacterised conserved protein (DUF2156) B34_03910 PF03706 Lysylphosphatidylglycerol synthase TM region B34_03912 PF02567 Phenazine biosynthesis-like protein B34_03913 PF00881 Nitroreductase family B34_03914 PF14151 YfhD-like protein B34_03917 PF01370 NAD dependent epimerase/dehydratase family B34_03917 PF08338 Domain of unknown function (DUF1731) B34_03918 PF02631 RecX family B34_03919 PF08838 Protein of unknown function (DUF1811) B34_03921 PF08176 Small acid-soluble spore protein K family B34_03922 PF14043 WVELL protein B34_03923 PF00535 Glycosyl transferase family 2 B34_03925 PF09586 Bacterial membrane protein YfhO B34_03926 PF04307 LexA-binding, inner membrane-associated putative hydrolase B34_03927 PF00730 HhH-GPD superfamily base excision DNA repair protein B34_03927 PF14815 NUDIX domain B34_03931 PF14182 YgaB-like protein B34_03932 PF04167 Protein of unknown function (DUF402) B34_03933 PF00005 ABC transporter B34_03933 PF00664 ABC transporter transmembrane region B34_03934 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_03934 PF00005 ABC transporter B34_03935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_03935 PF00005 ABC transporter B34_03936 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B34_03939 PF06081 Aromatic acid exporter family member 1 B34_03940 PF00202 Aminotransferase class-III B34_03941 PF00578 AhpC/TSA family B34_03942 PF01475 Ferric uptake regulator family B34_03943 PF11023 Zinc-ribbon containing domain B34_03944 PF14540 Nucleotidyltransferase-like B34_03944 PF18576 Helix-turn-helix domain B34_03979 PF17356 Phage-like element PBSX protein XtrA B34_03990 PF00589 Phage integrase family B34_03997 PF03354 Phage Terminase B34_04000 PF00574 Clp protease B34_04010 PF01464 Transglycosylase SLT domain B34_04012 PF13457 GW (Gly-Tryp) dipeptide domain B34_04012 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase B34_04013 PF12708 Pectate lyase superfamily protein B34_04013 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain B34_04017 PF10779 Haemolysin XhlA B34_04018 PF04688 SPP1 phage holin B34_04019 PF01183 Glycosyl hydrolases family 25 B34_04019 PF08239 Bacterial SH3 domain B34_04021 PF14449 Pre-toxin TG B34_04021 PF04740 LXG domain of WXG superfamily B34_04022 PF18801 response regulator aspartate phosphatase H, N terminal B34_04024 PF08863 YolD-like protein B34_04026 PF00717 Peptidase S24-like B34_04026 PF01726 LexA DNA binding domain B34_04028 PF18801 response regulator aspartate phosphatase H, N terminal B34_04032 PF01510 N-acetylmuramoyl-L-alanine amidase B34_04032 PF01471 Putative peptidoglycan binding domain B34_04034 PF04740 LXG domain of WXG superfamily B34_04034 PF14449 Pre-toxin TG B34_04035 PF18801 response regulator aspartate phosphatase H, N terminal B34_04035 PF13181 Tetratricopeptide repeat B34_04036 PF03129 Anticodon binding domain B34_04036 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain B34_04036 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) B34_04036 PF02824 TGS domain B34_04037 PF01487 Type I 3-dehydroquinase B34_04038 PF13667 ThiC-associated domain B34_04038 PF01964 Radical SAM ThiC family B34_04039 PF00005 ABC transporter B34_04040 PF09084 NMT1/THI5 like B34_04041 PF00528 Binding-protein-dependent transport system inner membrane component B34_04042 PF00296 Luciferase-like monooxygenase B34_04044 PF01381 Helix-turn-helix B34_04046 PF13732 Domain of unknown function (DUF4162) B34_04046 PF00005 ABC transporter B34_04050 PF00253 Ribosomal protein S14p/S29e B34_04053 PF08331 Domain of unknown function (DUF1730) B34_04054 PF12671 Putative amidase domain B34_04055 PF00588 SpoU rRNA Methylase family B34_04056 PF13171 Protein of unknown function (DUF4004) B34_04057 PF04519 Polymer-forming cytoskeletal B34_04059 PF06798 PrkA serine protein kinase C-terminal domain B34_04059 PF08298 PrkA AAA domain B34_04060 PF04285 Protein of unknown function (DUF444) B34_04062 PF07690 Major Facilitator Superfamily B34_04063 PF03358 NADPH-dependent FMN reductase B34_04065 PF00005 ABC transporter B34_04066 PF00005 ABC transporter B34_04067 PF12679 ABC-2 family transporter protein B34_04068 PF00665 Integrase core domain B34_04068 PF13276 HTH-like domain B34_04068 PF13333 Integrase core domain B34_04070 PF00313 'Cold-shock' DNA-binding domain B34_04071 PF00005 ABC transporter B34_04071 PF09383 NIL domain B34_04072 PF00528 Binding-protein-dependent transport system inner membrane component B34_04073 PF03180 NLPA lipoprotein B34_04074 PF00375 Sodium:dicarboxylate symporter family B34_04076 PF00326 Prolyl oligopeptidase family B34_04077 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) B34_04079 PF07875 Coat F domain B34_04080 PF13426 PAS domain B34_04080 PF13188 PAS domain B34_04080 PF00989 PAS fold B34_04080 PF00512 His Kinase A (phospho-acceptor) domain B34_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_04081 PF00565 Staphylococcal nuclease homologue B34_04081 PF00746 LPXTG cell wall anchor motif B34_04081 PF00149 Calcineurin-like phosphoesterase B34_04081 PF02872 5'-nucleotidase, C-terminal domain B34_04082 PF04203 Sortase domain B34_04083 PF00849 RNA pseudouridylate synthase B34_04083 PF01479 S4 domain B34_04084 PF17326 Family of unknown function (DUF5365) B34_04085 PF00571 CBS domain B34_04086 PF13419 Haloacid dehalogenase-like hydrolase B34_04087 PF00583 Acetyltransferase (GNAT) family B34_04087 PF00795 Carbon-nitrogen hydrolase B34_04089 PF12848 ABC transporter B34_04089 PF16326 ABC transporter C-terminal domain B34_04089 PF00005 ABC transporter B34_04090 PF01226 Formate/nitrite transporter B34_04091 PF03547 Membrane transport protein B34_04092 PF08240 Alcohol dehydrogenase GroES-like domain B34_04092 PF00107 Zinc-binding dehydrogenase B34_04093 PF04309 Glycerol-3-phosphate responsive antiterminator B34_04094 PF00230 Major intrinsic protein B34_04095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain B34_04095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain B34_04097 PF01266 FAD dependent oxidoreductase B34_04097 PF16901 C-terminal domain of alpha-glycerophosphate oxidase B34_04098 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I B34_04098 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II B34_04098 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III B34_04098 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain B34_04101 PF13185 GAF domain B34_04101 PF07730 Histidine kinase B34_04102 PF00072 Response regulator receiver domain B34_04102 PF00196 Bacterial regulatory proteins, luxR family B34_04103 PF03358 NADPH-dependent FMN reductase B34_04104 PF14148 YhdB-like protein B34_04105 PF13028 Protein of unknown function (DUF3889) B34_04106 PF02082 Transcriptional regulator B34_04107 PF00042 Globin B34_04107 PF00970 Oxidoreductase FAD-binding domain B34_04107 PF00175 Oxidoreductase NAD-binding domain B34_04108 PF04293 SpoVR like protein B34_04109 PF00877 NlpC/P60 family B34_04109 PF01476 LysM domain B34_04110 PF03466 LysR substrate binding domain B34_04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_04111 PF00285 Citrate synthase, C-terminal domain B34_04112 PF07995 Glucose / Sorbosone dehydrogenase B34_04114 PF00209 Sodium:neurotransmitter symporter family B34_04116 PF12833 Helix-turn-helix domain B34_04116 PF06445 GyrI-like small molecule binding domain B34_04117 PF00392 Bacterial regulatory proteins, gntR family B34_04117 PF00155 Aminotransferase class I and II B34_04119 PF17453 Sigma-M inhibitor B34_04120 PF13791 Sigma factor regulator C-terminal B34_04120 PF13800 Sigma factor regulator N-terminal B34_04121 PF08281 Sigma-70, region 4 B34_04121 PF04542 Sigma-70 region 2 B34_04122 PF07883 Cupin domain B34_04124 PF01553 Acyltransferase B34_04126 PF05656 Protein of unknown function (DUF805) B34_04128 PF00440 Bacterial regulatory proteins, tetR family B34_04129 PF01595 Cyclin M transmembrane N-terminal domain B34_04129 PF00571 CBS domain B34_04129 PF03471 Transporter associated domain B34_04130 PF13411 MerR HTH family regulatory protein B34_04132 PF01595 Cyclin M transmembrane N-terminal domain B34_04132 PF03471 Transporter associated domain B34_04132 PF00571 CBS domain B34_04135 PF01520 N-acetylmuramoyl-L-alanine amidase B34_04135 PF05036 Sporulation related domain B34_04136 PF02537 CrcB-like protein, Camphor Resistance (CrcB) B34_04137 PF02537 CrcB-like protein, Camphor Resistance (CrcB) B34_04138 PF03009 Glycerophosphoryl diester phosphodiesterase family B34_04139 PF17444 Uncharacterized YhdX-like B34_04140 PF00924 Mechanosensitive ion channel B34_04141 PF02146 Sir2 family B34_04144 PF01522 Polysaccharide deacetylase B34_04145 PF01063 Amino-transferase class IV B34_04146 PF03553 Na+/H+ antiporter family B34_04147 PF01263 Aldose 1-epimerase B34_04148 PF16302 Domain of unknown function (DUF4944) B34_04151 PF00582 Universal stress protein family B34_04152 PF00664 ABC transporter transmembrane region B34_04152 PF00005 ABC transporter B34_04153 PF00005 ABC transporter B34_04153 PF00664 ABC transporter transmembrane region B34_04154 PF13460 NAD(P)H-binding B34_04156 PF00269 Small, acid-soluble spore proteins, alpha/beta type B34_04158 PF00005 ABC transporter B34_04158 PF17912 MalK OB fold domain B34_04158 PF03459 TOBE domain B34_04159 PF13556 PucR C-terminal helix-turn-helix domain B34_04160 PF17277 Family of unknown function (DUF5342) B34_04161 PF14398 YheC/D like ATP-grasp B34_04162 PF14398 YheC/D like ATP-grasp B34_04163 PF04286 Protein of unknown function (DUF445) B34_04164 PF06133 Control of competence regulator ComK, YlbF/YmcA B34_04166 PF04055 Radical SAM superfamily B34_04167 PF00999 Sodium/hydrogen exchanger family B34_04168 PF02080 TrkA-C domain B34_04170 PF00378 Enoyl-CoA hydratase/isomerase B34_04171 PF18801 response regulator aspartate phosphatase H, N terminal B34_04174 PF14120 YhzD-like protein B34_04175 PF13732 Domain of unknown function (DUF4162) B34_04175 PF00005 ABC transporter B34_04177 PF00149 Calcineurin-like phosphoesterase B34_04178 PF13514 AAA domain B34_04179 PF01966 HD domain B34_04180 PF14147 Sporulation protein YhaL B34_04183 PF11667 Putative zincin peptidase B34_04184 PF08963 Protein of unknown function (DUF1878) B34_04185 PF01047 MarR family B34_04186 PF12732 YtxH-like protein B34_04188 PF17099 Tryptophan transporter TrpP B34_04189 PF00266 Aminotransferase class-V B34_04190 PF01230 HIT domain B34_04191 PF00005 ABC transporter B34_04192 PF05975 Bacterial ABC transporter protein EcsB B34_04193 PF12787 EcsC protein family B34_04194 PF01546 Peptidase family M20/M25/M40 B34_04194 PF07687 Peptidase dimerisation domain B34_04196 PF03992 Antibiotic biosynthesis monooxygenase B34_04197 PF00912 Transglycosylase B34_04197 PF00905 Penicillin binding protein transpeptidase domain B34_04198 PF01208 Uroporphyrinogen decarboxylase (URO-D) B34_04201 PF00440 Bacterial regulatory proteins, tetR family B34_04201 PF17932 Tetracyclin repressor-like, C-terminal domain B34_04203 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III B34_04203 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal B34_04204 PF05343 M42 glutamyl aminopeptidase B34_04206 PF00375 Sodium:dicarboxylate symporter family B34_04207 PF14149 YhfH-like protein B34_04208 PF12706 Beta-lactamase superfamily domain B34_04209 PF10437 Bacterial lipoate protein ligase C-terminus B34_04209 PF03099 Biotin/lipoate A/B protein ligase family B34_04210 PF00501 AMP-binding enzyme B34_04210 PF13193 AMP-binding enzyme C-terminal domain B34_04212 PF01381 Helix-turn-helix B34_04212 PF07883 Cupin domain B34_04215 PF01435 Peptidase family M48 B34_04215 PF16491 CAAX prenyl protease N-terminal, five membrane helices B34_04217 PF00892 EamA-like transporter family B34_04218 PF01497 Periplasmic binding protein B34_04219 PF01032 FecCD transport family B34_04220 PF01032 FecCD transport family B34_04221 PF00300 Histidine phosphatase superfamily (branch 1) B34_04222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_04223 PF01266 FAD dependent oxidoreductase B34_04223 PF00355 Rieske [2Fe-2S] domain B34_04225 PF08858 IDEAL domain B34_04226 PF06338 ComK protein B34_04228 PF09335 SNARE associated Golgi protein B34_04229 PF10502 Signal peptidase, peptidase S26 B34_04230 PF00082 Subtilase family B34_04232 PF17853 GGDEF-like domain B34_04232 PF07905 Purine catabolism regulatory protein-like family B34_04232 PF13556 PucR C-terminal helix-turn-helix domain B34_04234 PF01979 Amidohydrolase family B34_04235 PF01546 Peptidase family M20/M25/M40 B34_04236 PF05899 Protein of unknown function (DUF861) B34_04236 PF07883 Cupin domain B34_04237 PF02615 Malate/L-lactate dehydrogenase B34_04238 PF02615 Malate/L-lactate dehydrogenase B34_04239 PF02615 Malate/L-lactate dehydrogenase B34_04240 PF00549 CoA-ligase B34_04240 PF02629 CoA binding domain B34_04241 PF06545 Protein of unknown function (DUF1116) B34_04243 PF00696 Amino acid kinase family B34_04244 PF07690 Major Facilitator Superfamily B34_04245 PF10901 Protein of unknown function (DUF2690) B34_04246 PF18801 response regulator aspartate phosphatase H, N terminal B34_04254 PF02056 Family 4 glycosyl hydrolase B34_04254 PF11975 Family 4 glycosyl hydrolase C-terminal domain B34_04255 PF05145 Transition state regulatory protein AbrB B34_04256 PF11007 Spore coat associated protein JA (CotJA) B34_04257 PF12652 CotJB protein B34_04258 PF05067 Manganese containing catalase B34_04259 PF13193 AMP-binding enzyme C-terminal domain B34_04259 PF00501 AMP-binding enzyme B34_04260 PF07690 Major Facilitator Superfamily B34_04262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_04262 PF00512 His Kinase A (phospho-acceptor) domain B34_04262 PF00989 PAS fold B34_04262 PF16736 Single Cache-like B34_04263 PF00072 Response regulator receiver domain B34_04263 PF00486 Transcriptional regulatory protein, C terminal B34_04264 PF02915 Rubrerythrin B34_04266 PF00528 Binding-protein-dependent transport system inner membrane component B34_04267 PF12705 PD-(D/E)XK nuclease superfamily B34_04268 PF12705 PD-(D/E)XK nuclease superfamily B34_04268 PF00580 UvrD/REP helicase N-terminal domain B34_04268 PF13361 UvrD-like helicase C-terminal domain B34_04269 PF00149 Calcineurin-like phosphoesterase B34_04269 PF12320 Type 5 capsule protein repressor C-terminal domain B34_04270 PF13476 AAA domain B34_04271 PF10676 Spore germination protein gerPA/gerPF B34_04272 PF10970 Spore germination protein GerPE B34_04274 PF10737 Spore germination protein GerPC B34_04275 PF10803 Spore germination GerPB B34_04276 PF10676 Spore germination protein gerPA/gerPF B34_04277 PF12650 Domain of unknown function (DUF3784) B34_04278 PF09388 Spo0E like sporulation regulatory protein B34_04279 PF08757 CotH kinase protein B34_04281 PF01557 Fumarylacetoacetate (FAA) hydrolase family B34_04283 PF03193 RsgA GTPase B34_04284 PF07457 Protein of unknown function (DUF1516) B34_04285 PF10949 Protein of unknown function (DUF2777) B34_04286 PF13537 Glutamine amidotransferase domain B34_04286 PF00733 Asparagine synthase B34_04287 PF00909 Ammonium Transporter Family B34_04288 PF00909 Ammonium Transporter Family B34_04289 PF00543 Nitrogen regulatory protein P-II B34_04290 PF01554 MatE B34_04291 PF12833 Helix-turn-helix domain B34_04291 PF02311 AraC-like ligand binding domain B34_04293 PF00356 Bacterial regulatory proteins, lacI family B34_04294 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_04294 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_04295 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B34_04295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B34_04296 PF05504 Spore germination B3/ GerAC like, C-terminal B34_04298 PF03323 Bacillus/Clostridium GerA spore germination protein B34_04299 PF03323 Bacillus/Clostridium GerA spore germination protein B34_04300 PF01810 LysE type translocator B34_04301 PF00392 Bacterial regulatory proteins, gntR family B34_04301 PF00155 Aminotransferase class I and II B34_04302 PF00202 Aminotransferase class-III B34_04303 PF00282 Pyridoxal-dependent decarboxylase conserved domain B34_04304 PF04183 IucA / IucC family B34_04304 PF06276 Ferric iron reductase FhuF-like transporter B34_04306 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) B34_04307 PF04183 IucA / IucC family B34_04307 PF06276 Ferric iron reductase FhuF-like transporter B34_04308 PF13673 Acetyltransferase (GNAT) domain B34_04310 PF13280 WYL domain B34_04310 PF08279 HTH domain B34_04311 PF02310 B12 binding domain B34_04311 PF02574 Homocysteine S-methyltransferase B34_04311 PF00809 Pterin binding enzyme B34_04311 PF02965 Vitamin B12 dependent methionine synthase, activation domain B34_04311 PF02607 B12 binding domain B34_04312 PF02574 Homocysteine S-methyltransferase B34_04312 PF02219 Methylenetetrahydrofolate reductase B34_04313 PF04461 Protein of unknown function (DUF520) B34_04314 PF13509 S1 domain B34_04314 PF17783 CvfB-like winged helix domain B34_04317 PF02645 Uncharacterised protein, DegV family COG1307 B34_04318 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) B34_04318 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 B34_04319 PF12690 Intracellular proteinase inhibitor B34_04320 PF00478 IMP dehydrogenase / GMP reductase domain B34_04321 PF12758 Protein of unknown function (DUF3813) B34_04323 PF00326 Prolyl oligopeptidase family B34_04324 PF01883 Iron-sulfur cluster assembly protein B34_04325 PF01118 Semialdehyde dehydrogenase, NAD binding domain B34_04325 PF02774 Semialdehyde dehydrogenase, dimerisation domain B34_04326 PF01960 ArgJ family B34_04327 PF00696 Amino acid kinase family B34_04328 PF00202 Aminotransferase class-III B34_04329 PF00117 Glutamine amidotransferase class-I B34_04329 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain B34_04330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B34_04330 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B34_04331 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain B34_04331 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain B34_04332 PF02673 Bacitracin resistance protein BacA B34_04333 PF14168 YjzC-like protein B34_04337 PF02608 ABC transporter substrate-binding protein PnrA-like B34_04338 PF10815 ComZ B34_04340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal B34_04340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III B34_04341 PF00109 Beta-ketoacyl synthase, N-terminal domain B34_04341 PF02801 Beta-ketoacyl synthase, C-terminal domain B34_04342 PF10026 Predicted Zn-dependent protease (DUF2268) B34_04343 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_04343 PF00005 ABC transporter B34_04344 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_04344 PF00005 ABC transporter B34_04345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B34_04346 PF00528 Binding-protein-dependent transport system inner membrane component B34_04347 PF12911 N-terminal TM domain of oligopeptide transport permease C B34_04347 PF00528 Binding-protein-dependent transport system inner membrane component B34_04349 PF02441 Flavoprotein B34_04351 PF12227 Protein of unknown function (DUF3603) B34_04352 PF00579 tRNA synthetases class I (W and Y) B34_04353 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B34_04354 PF00528 Binding-protein-dependent transport system inner membrane component B34_04355 PF00528 Binding-protein-dependent transport system inner membrane component B34_04355 PF12911 N-terminal TM domain of oligopeptide transport permease C B34_04356 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_04356 PF00005 ABC transporter B34_04357 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_04357 PF00005 ABC transporter B34_04358 PF13508 Acetyltransferase (GNAT) domain B34_04359 PF03960 ArsC family B34_04360 PF03741 Integral membrane protein TerC family B34_04361 PF05389 Negative regulator of genetic competence (MecA) B34_04364 PF01970 Tripartite tricarboxylate transporter TctA family B34_04365 PF12431 Transcriptional regulator B34_04365 PF00072 Response regulator receiver domain B34_04366 PF00989 PAS fold B34_04366 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain B34_04366 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_04366 PF17203 Single cache domain 3 B34_04367 PF06054 Competence protein CoiA-like family B34_04368 PF01432 Peptidase family M3 B34_04368 PF08439 Oligopeptidase F B34_04371 PF01152 Bacterial-like globin B34_04372 PF01464 Transglycosylase SLT domain B34_04373 PF01928 CYTH domain B34_04375 PF04607 Region found in RelA / SpoT proteins B34_04376 PF01513 ATP-NAD kinase B34_04377 PF00849 RNA pseudouridylate synthase B34_04378 PF00149 Calcineurin-like phosphoesterase B34_04379 PF02254 TrkA-N domain B34_04379 PF02080 TrkA-C domain B34_04379 PF00999 Sodium/hydrogen exchanger family B34_04380 PF03070 TENA/THI-4/PQQC family B34_04381 PF02581 Thiamine monophosphate synthase B34_04382 PF01266 FAD dependent oxidoreductase B34_04383 PF02597 ThiS family B34_04384 PF05690 Thiazole biosynthesis protein ThiG B34_04385 PF00899 ThiF family B34_04386 PF08543 Phosphomethylpyrimidine kinase B34_04388 PF14153 Spore coat protein CotO B34_04389 PF10612 Spore coat protein Z B34_04390 PF10612 Spore coat protein Z B34_04391 PF07552 Spore Coat Protein X and V domain B34_04393 PF07552 Spore Coat Protein X and V domain B34_04394 PF07098 Protein of unknown function (DUF1360) B34_04397 PF14069 Stage VI sporulation protein F B34_04398 PF00580 UvrD/REP helicase N-terminal domain B34_04398 PF13361 UvrD-like helicase C-terminal domain B34_04400 PF09335 SNARE associated Golgi protein B34_04401 PF16363 GDP-mannose 4,6 dehydratase B34_04402 PF00483 Nucleotidyl transferase B34_04403 PF04138 GtrA-like protein B34_04404 PF13673 Acetyltransferase (GNAT) domain B34_04406 PF00756 Putative esterase B34_04409 PF01053 Cys/Met metabolism PLP-dependent enzyme B34_04410 PF01053 Cys/Met metabolism PLP-dependent enzyme B34_04411 PF05684 Protein of unknown function (DUF819) B34_04414 PF11954 Domain of unknown function (DUF3471) B34_04414 PF00144 Beta-lactamase B34_04415 PF04616 Glycosyl hydrolases family 43 B34_04418 PF14602 Hexapeptide repeat of succinyl-transferase B34_04418 PF12464 Maltose acetyltransferase B34_04420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_04420 PF03466 LysR substrate binding domain B34_04421 PF00258 Flavodoxin B34_04421 PF00175 Oxidoreductase NAD-binding domain B34_04421 PF00667 FAD binding domain B34_04422 PF01077 Nitrite and sulphite reductase 4Fe-4S domain B34_04422 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain B34_04423 PF03466 LysR substrate binding domain B34_04423 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_04424 PF00892 EamA-like transporter family B34_04425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_04426 PF16800 IseA DL-endopeptidase inhibitor B34_04427 PF01476 LysM domain B34_04427 PF06725 3D domain B34_04428 PF07690 Major Facilitator Superfamily B34_04429 PF00440 Bacterial regulatory proteins, tetR family B34_04431 PF04634 Protein of unknown function, DUF600 B34_04432 PF04740 LXG domain of WXG superfamily B34_04433 PF14449 Pre-toxin TG B34_04433 PF04740 LXG domain of WXG superfamily B34_04434 PF05908 Poly-gamma-glutamate hydrolase B34_04435 PF06114 IrrE N-terminal-like domain B34_04436 PF01381 Helix-turn-helix B34_04440 PF01695 IstB-like ATP binding protein B34_04443 PF17356 Phage-like element PBSX protein XtrA B34_04444 PF08281 Sigma-70, region 4 B34_04445 PF03592 Terminase small subunit B34_04445 PF10668 Phage terminase small subunit B34_04446 PF04466 Phage terminase large subunit B34_04446 PF17288 Terminase RNAseH like domain B34_04447 PF04860 Phage portal protein B34_04448 PF04860 Phage portal protein B34_04449 PF14550 Putative phage serine protease XkdF B34_04450 PF05065 Phage capsid family B34_04451 PF11436 Protein of unknown function (DUF3199) B34_04452 PF12206 Domain of unknown function (DUF3599) B34_04453 PF04883 Bacteriophage HK97-gp10, putative tail-component B34_04456 PF17482 Phage tail sheath C-terminal domain B34_04456 PF04984 Phage tail sheath protein subtilisin-like domain B34_04456 PF17481 Phage tail sheath protein beta-sandwich domain B34_04457 PF09393 Phage tail tube protein B34_04458 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC B34_04459 PF01464 Transglycosylase SLT domain B34_04460 PF01476 LysM domain B34_04462 PF10844 Protein of unknown function (DUF2577) B34_04463 PF10934 Protein of unknown function (DUF2634) B34_04464 PF04865 Baseplate J-like protein B34_04465 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) B34_04469 PF10779 Haemolysin XhlA B34_04470 PF04688 SPP1 phage holin B34_04471 PF01510 N-acetylmuramoyl-L-alanine amidase B34_04471 PF01471 Putative peptidoglycan binding domain B34_04472 PF00392 Bacterial regulatory proteins, gntR family B34_04472 PF07729 FCD domain B34_04473 PF00107 Zinc-binding dehydrogenase B34_04473 PF08240 Alcohol dehydrogenase GroES-like domain B34_04474 PF03786 D-mannonate dehydratase (UxuA) B34_04475 PF00106 short chain dehydrogenase B34_04476 PF00107 Zinc-binding dehydrogenase B34_04476 PF08240 Alcohol dehydrogenase GroES-like domain B34_04477 PF07690 Major Facilitator Superfamily B34_04478 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system B34_04479 PF14171 Toxin SpoIISA, type II toxin-antitoxin system B34_04480 PF01384 Phosphate transporter family B34_04481 PF01865 Protein of unknown function DUF47 B34_04483 PF04854 Protein of unknown function, DUF624 B34_04484 PF04854 Protein of unknown function, DUF624 B34_04485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_04485 PF00672 HAMP domain B34_04485 PF02743 Cache domain B34_04485 PF06580 Histidine kinase B34_04486 PF00072 Response regulator receiver domain B34_04486 PF12833 Helix-turn-helix domain B34_04487 PF13416 Bacterial extracellular solute-binding protein B34_04488 PF00528 Binding-protein-dependent transport system inner membrane component B34_04489 PF00528 Binding-protein-dependent transport system inner membrane component B34_04490 PF07470 Glycosyl Hydrolase Family 88 B34_04491 PF12833 Helix-turn-helix domain B34_04492 PF13472 GDSL-like Lipase/Acylhydrolase family B34_04493 PF09224 Domain of unknown function (DUF1961) B34_04494 PF04854 Protein of unknown function, DUF624 B34_04495 PF18370 Rhamnogalacturonan I lyases beta-sheet domain B34_04497 PF13472 GDSL-like Lipase/Acylhydrolase family B34_04498 PF01839 FG-GAP repeat B34_04498 PF18370 Rhamnogalacturonan I lyases beta-sheet domain B34_04499 PF00248 Aldo/keto reductase family B34_04500 PF00657 GDSL-like Lipase/Acylhydrolase B34_04501 PF08532 Beta-galactosidase trimerisation domain B34_04501 PF02449 Beta-galactosidase B34_04501 PF08533 Beta-galactosidase C-terminal domain B34_04503 PF01547 Bacterial extracellular solute-binding protein B34_04504 PF00528 Binding-protein-dependent transport system inner membrane component B34_04505 PF00528 Binding-protein-dependent transport system inner membrane component B34_04506 PF13520 Amino acid permease B34_04507 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_04509 PF13180 PDZ domain B34_04510 PF14748 Pyrroline-5-carboxylate reductase dimerisation B34_04510 PF03807 NADP oxidoreductase coenzyme F420-dependent B34_04511 PF04951 D-aminopeptidase B34_04512 PF00528 Binding-protein-dependent transport system inner membrane component B34_04513 PF12911 N-terminal TM domain of oligopeptide transport permease C B34_04513 PF00528 Binding-protein-dependent transport system inner membrane component B34_04514 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_04514 PF00005 ABC transporter B34_04515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B34_04516 PF02016 LD-carboxypeptidase N-terminal domain B34_04516 PF17676 LD-carboxypeptidase C-terminal domain B34_04517 PF13378 Enolase C-terminal domain-like B34_04517 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain B34_04518 PF00877 NlpC/P60 family B34_04519 PF00005 ABC transporter B34_04519 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B34_04521 PF03061 Thioesterase superfamily B34_04522 PF04239 Protein of unknown function (DUF421) B34_04523 PF00544 Pectate lyase B34_04528 PF12867 DinB superfamily B34_04529 PF00893 Small Multidrug Resistance protein B34_04530 PF00893 Small Multidrug Resistance protein B34_04531 PF00551 Formyl transferase B34_04531 PF01842 ACT domain B34_04532 PF00696 Amino acid kinase family B34_04532 PF01472 PUA domain B34_04533 PF00171 Aldehyde dehydrogenase family B34_04534 PF02566 OsmC-like protein B34_04535 PF01047 MarR family B34_04536 PF02566 OsmC-like protein B34_04538 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region B34_04539 PF00300 Histidine phosphatase superfamily (branch 1) B34_04542 PF01717 Cobalamin-independent synthase, Catalytic domain B34_04542 PF08267 Cobalamin-independent synthase, N-terminal domain B34_04543 PF00082 Subtilase family B34_04544 PF11132 Transcriptional regulator protein (SplA) B34_04545 PF03448 MgtE intracellular N domain B34_04545 PF01769 Divalent cation transporter B34_04545 PF00571 CBS domain B34_04547 PF13411 MerR HTH family regulatory protein B34_04551 PF01047 MarR family B34_04552 PF01068 ATP dependent DNA ligase domain B34_04553 PF02735 Ku70/Ku80 beta-barrel domain B34_04554 PF00990 Diguanylate cyclase, GGDEF domain B34_04554 PF03707 Bacterial signalling protein N terminal repeat B34_04554 PF00563 EAL domain B34_04555 PF09335 SNARE associated Golgi protein B34_04556 PF03741 Integral membrane protein TerC family B34_04557 PF04542 Sigma-70 region 2 B34_04558 PF12791 Anti-sigma factor N-terminus B34_04559 PF00269 Small, acid-soluble spore proteins, alpha/beta type B34_04560 PF08876 Domain of unknown function (DUF1836) B34_04561 PF01435 Peptidase family M48 B34_04562 PF02386 Cation transport protein B34_04563 PF03717 Penicillin-binding Protein dimerisation domain B34_04563 PF05223 NTF2-like N-terminal transpeptidase domain B34_04563 PF00905 Penicillin binding protein transpeptidase domain B34_04566 PF01757 Acyltransferase family B34_04567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_04567 PF00512 His Kinase A (phospho-acceptor) domain B34_04567 PF00989 PAS fold B34_04567 PF13188 PAS domain B34_04567 PF13426 PAS domain B34_04568 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain B34_04568 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain B34_04570 PF01008 Initiation factor 2 subunit family B34_04571 PF01636 Phosphotransferase enzyme family B34_04572 PF00795 Carbon-nitrogen hydrolase B34_04573 PF00155 Aminotransferase class I and II B34_04574 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain B34_04574 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain B34_04575 PF00596 Class II Aldolase and Adducin N-terminal domain B34_04576 PF03079 ARD/ARD' family B34_04577 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B34_04578 PF06803 Protein of unknown function (DUF1232) B34_04580 PF02743 Cache domain B34_04580 PF00512 His Kinase A (phospho-acceptor) domain B34_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_04581 PF01047 MarR family B34_04582 PF13677 Membrane MotB of proton-channel complex MotA/MotB B34_04582 PF00691 OmpA family B34_04583 PF01618 MotA/TolQ/ExbB proton channel family B34_04584 PF10431 C-terminal, D2-small domain, of ClpB protein B34_04584 PF17871 AAA lid domain B34_04584 PF07724 AAA domain (Cdc48 subfamily) B34_04584 PF00004 ATPase family associated with various cellular activities (AAA) B34_04586 PF06508 Queuosine biosynthesis protein QueC B34_04587 PF01242 6-pyruvoyl tetrahydropterin synthase B34_04588 PF04055 Radical SAM superfamily B34_04589 PF14489 QueF-like protein B34_04590 PF02899 Phage integrase, N-terminal SAM-like domain B34_04590 PF00589 Phage integrase family B34_04591 PF00589 Phage integrase family B34_04591 PF02899 Phage integrase, N-terminal SAM-like domain B34_04596 PF01068 ATP dependent DNA ligase domain B34_04601 PF04740 LXG domain of WXG superfamily B34_04601 PF14449 Pre-toxin TG B34_04619 PF00589 Phage integrase family B34_04644 PF01510 N-acetylmuramoyl-L-alanine amidase B34_04644 PF01476 LysM domain B34_04644 PF01471 Putative peptidoglycan binding domain B34_04649 PF08863 YolD-like protein B34_04650 PF14659 Phage integrase, N-terminal SAM-like domain B34_04650 PF00589 Phage integrase family B34_04651 PF14489 QueF-like protein B34_04654 PF18801 response regulator aspartate phosphatase H, N terminal B34_04655 PF13176 Tetratricopeptide repeat B34_04655 PF18801 response regulator aspartate phosphatase H, N terminal B34_04656 PF05675 Protein of unknown function (DUF817) B34_04657 PF13443 Cro/C1-type HTH DNA-binding domain B34_04658 PF11188 Protein of unknown function (DUF2975) B34_04664 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) B34_04666 PF07486 Cell Wall Hydrolase B34_04667 PF01943 Polysaccharide biosynthesis protein B34_04668 PF00578 AhpC/TSA family B34_04670 PF00557 Metallopeptidase family M24 B34_04670 PF01321 Creatinase/Prolidase N-terminal domain B34_04673 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family B34_04673 PF00356 Bacterial regulatory proteins, lacI family B34_04674 PF03123 CAT RNA binding domain B34_04674 PF00874 PRD domain B34_04675 PF02378 Phosphotransferase system, EIIC B34_04675 PF00367 phosphotransferase system, EIIB B34_04675 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B34_04676 PF00381 PTS HPr component phosphorylation site B34_04677 PF02896 PEP-utilising enzyme, TIM barrel domain B34_04677 PF05524 PEP-utilising enzyme, N-terminal B34_04677 PF00391 PEP-utilising enzyme, mobile domain B34_04678 PF11132 Transcriptional regulator protein (SplA) B34_04680 PF00583 Acetyltransferase (GNAT) family B34_04681 PF02743 Cache domain B34_04681 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B34_04681 PF00672 HAMP domain B34_04683 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase B34_04683 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase B34_04684 PF00188 Cysteine-rich secretory protein family B34_04685 PF00905 Penicillin binding protein transpeptidase domain B34_04685 PF03717 Penicillin-binding Protein dimerisation domain B34_04686 PF00989 PAS fold B34_04686 PF08447 PAS fold B34_04686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B34_04686 PF00512 His Kinase A (phospho-acceptor) domain B34_04687 PF00155 Aminotransferase class I and II B34_04689 PF06271 RDD family B34_04691 PF00072 Response regulator receiver domain B34_04691 PF01584 CheW-like domain B34_04692 PF14177 YkyB-like protein B34_04693 PF07690 Major Facilitator Superfamily B34_04694 PF03734 L,D-transpeptidase catalytic domain B34_04694 PF01476 LysM domain B34_04695 PF00149 Calcineurin-like phosphoesterase B34_04695 PF10518 TAT (twin-arginine translocation) pathway signal sequence B34_04697 PF10388 EAL-domain associated signalling protein domain B34_04697 PF00563 EAL domain B34_04699 PF08796 Protein of unknown function (DUF1797) B34_04701 PF04308 Ribonuclease H-like B34_04702 PF14156 Antirepressor AbbA B34_04704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B34_04704 PF03466 LysR substrate binding domain B34_04705 PF00258 Flavodoxin B34_04707 PF00258 Flavodoxin B34_04708 PF14602 Hexapeptide repeat of succinyl-transferase B34_04708 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal B34_04708 PF00132 Bacterial transferase hexapeptide (six repeats) B34_04709 PF07687 Peptidase dimerisation domain B34_04709 PF01546 Peptidase family M20/M25/M40 B34_04710 PF03698 Uncharacterised protein family (UPF0180) B34_04711 PF00578 AhpC/TSA family B34_04711 PF10417 C-terminal domain of 1-Cys peroxiredoxin B34_04712 PF00578 AhpC/TSA family B34_04715 PF12804 MobA-like NTP transferase domain B34_04716 PF00899 ThiF family B34_04717 PF00994 Probable molybdopterin binding domain B34_04717 PF03453 MoeA N-terminal region (domain I and II) B34_04717 PF03454 MoeA C-terminal region (domain IV) B34_04718 PF03205 Molybdopterin guanine dinucleotide synthesis protein B B34_04719 PF02391 MoaE protein B34_04720 PF02597 ThiS family B34_04722 PF00664 ABC transporter transmembrane region B34_04722 PF00005 ABC transporter B34_04723 PF00664 ABC transporter transmembrane region B34_04723 PF00005 ABC transporter B34_04724 PF04893 Yip1 domain B34_04725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B34_04726 PF00005 ABC transporter B34_04727 PF02687 FtsX-like permease family B34_04727 PF12704 MacB-like periplasmic core domain B34_04728 PF08220 DeoR-like helix-turn-helix domain B34_04728 PF00455 DeoR C terminal sensor domain B34_04729 PF00294 pfkB family carbohydrate kinase B34_04730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B34_04730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B34_04731 PF10502 Signal peptidase, peptidase S26 B34_04734 PF00005 ABC transporter B34_04734 PF12848 ABC transporter B34_04736 PF02073 Thermophilic metalloprotease (M29)