B34_00003 SM00966 SpoVT / AbrB like domain B34_00004 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B34_00004 SM00091 PAS domain B34_00004 SM00387 Histidine kinase-like ATPases B34_00004 SM00388 His Kinase A (phosphoacceptor) domain B34_00007 SM00849 Metallo-beta-lactamase superfamily B34_00014 SM00861 Transketolase, pyrimidine binding domain B34_00031 SM00838 Elongation factor G C-terminus B34_00033 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_00037 SM00670 Large family of predicted nucleotide-binding domains B34_00042 SM00878 Biotin carboxylase C-terminal domain B34_00051 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_00061 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_00072 SM00740 B34_00072 B34_00073 SM00740 B34_00073 B34_00085 SM00842 Cell division protein FtsA B34_00086 SM00864 Tubulin/FtsZ family, GTPase domain B34_00086 SM00865 Tubulin/FtsZ family, C-terminal domain B34_00093 SM00382 ATPases associated with a variety of cellular activities B34_00100 SM00363 S4 RNA-binding domain B34_00105 SM00363 S4 RNA-binding domain B34_00110 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain B34_00111 SM00851 MGS-like domain B34_00111 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B34_00114 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family B34_00125 SM00831 Cation transporter/ATPase, N-terminus B34_00128 SM00072 Guanylate kinase homologues. B34_00129 SM01409 B34_00129 B34_00131 SM00487 DEAD-like helicases superfamily B34_00131 SM00490 helicase superfamily c-terminal domain B34_00136 SM00331 Sigma factor PP2C-like phosphatases B34_00136 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain B34_00137 SM00220 Serine/Threonine protein kinases, catalytic domain B34_00137 SM00740 B34_00137 B34_00140 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain B34_00143 SM01120 B34_00143 B34_00143 SM01121 B34_00143 B34_00146 SM00487 DEAD-like helicases superfamily B34_00146 SM00490 helicase superfamily c-terminal domain B34_00149 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. B34_00150 SM00822 B34_00150 B34_00152 SM00358 Double-stranded RNA binding motif B34_00152 SM00535 Ribonuclease III family B34_00153 SM00968 SMC proteins Flexible Hinge Domain B34_00154 SM00382 ATPases associated with a variety of cellular activities B34_00154 SM00962 SRP54-type protein, GTPase domain B34_00154 SM00963 SRP54-type protein, helical bundle domain B34_00156 SM00382 ATPases associated with a variety of cellular activities B34_00156 SM00962 SRP54-type protein, GTPase domain B34_00156 SM00963 SRP54-type protein, helical bundle domain B34_00168 SM00881 CoA binding domain B34_00170 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B34_00170 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B34_00170 SM00493 B34_00170 B34_00174 SM00382 ATPases associated with a variety of cellular activities B34_00174 SM01086 C-terminal, D2-small domain, of ClpB protein B34_00183 SM00382 ATPases associated with a variety of cellular activities B34_00192 SM00448 cheY-homologous receiver domain B34_00199 SM00382 ATPases associated with a variety of cellular activities B34_00199 SM00962 SRP54-type protein, GTPase domain B34_00201 SM00448 cheY-homologous receiver domain B34_00202 SM00073 Histidine Phosphotransfer domain B34_00202 SM00260 Two component signalling adaptor domain B34_00202 SM00387 Histidine kinase-like ATPases B34_00202 SM01231 B34_00202 B34_00203 SM00260 Two component signalling adaptor domain B34_00215 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_00217 SM00479 B34_00217 B34_00217 SM00481 DNA polymerase alpha chain like domain B34_00219 SM01067 Cellulose binding domain B34_00224 SM00316 Ribosomal protein S1-like RNA-binding domain B34_00224 SM00322 K homology RNA-binding domain B34_00231 SM00904 Riboflavin kinase B34_00232 SM01387 B34_00232 B34_00233 SM00316 Ribosomal protein S1-like RNA-binding domain B34_00233 SM00322 K homology RNA-binding domain B34_00239 SM00859 Semialdehyde dehydrogenase, NAD binding domain B34_00241 SM01130 B34_00241 B34_00242 SM00849 Metallo-beta-lactamase superfamily B34_00245 SM00382 ATPases associated with a variety of cellular activities B34_00245 SM00843 B34_00245 B34_00246 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_00246 SM00866 B34_00246 B34_00253 SM00530 Helix-turn-helix XRE-family like proteins B34_00255 SM00852 Probable molybdopterin binding domain B34_00256 SM00382 ATPases associated with a variety of cellular activities B34_00257 SM00322 K homology RNA-binding domain B34_00257 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_00261 SM00829 Enoylreductase B34_00263 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_00266 SM00533 DNA-binding domain of DNA mismatch repair MUTS family B34_00266 SM00534 ATPase domain of DNA mismatch repair MUTS family B34_00267 SM00853 MutL C terminal dimerisation domain B34_00267 SM01340 B34_00267 B34_00272 SM00833 Cobalamin synthesis protein cobW C-terminal domain B34_00290 SM00636 B34_00290 B34_00291 SM00257 Lysin motif B34_00308 SM00849 Metallo-beta-lactamase superfamily B34_00312 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_00312 SM00895 B34_00312 B34_00314 SM00646 B34_00314 B34_00327 SM00860 SMI1 / KNR4 family B34_00334 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_00334 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_00334 SM00319 Homologues of the ligand binding domain of Tar B34_00335 SM00966 SpoVT / AbrB like domain B34_00338 SM00860 SMI1 / KNR4 family B34_00339 SM00860 SMI1 / KNR4 family B34_00340 SM00860 SMI1 / KNR4 family B34_00341 SM00860 SMI1 / KNR4 family B34_00345 SM00028 Tetratricopeptide repeats B34_00350 SM00644 B34_00350 B34_00351 SM00710 Parallel beta-helix repeats B34_00352 SM00710 Parallel beta-helix repeats B34_00359 SM01040 BRO family, N-terminal domain B34_00397 SM00411 bacterial (prokaryotic) histone like domain B34_00407 SM00465 GIY-YIG type nucleases (URI domain) B34_00482 SM00481 DNA polymerase alpha chain like domain B34_00485 SM00497 Intron encoded nuclease repeat motif B34_00485 SM00507 HNH nucleases B34_00503 SM00305 Hint (Hedgehog/Intein) domain C-terminal region B34_00503 SM00306 Hint (Hedgehog/Intein) domain N-terminal region B34_00533 SM00857 Resolvase, N terminal domain B34_00537 SM00422 helix_turn_helix, mercury resistance B34_00538 SM01230 B34_00538 B34_00568 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_00571 SM00903 Flavin reductase like domain B34_00578 SM00257 Lysin motif B34_00579 SM00857 Resolvase, N terminal domain B34_00581 SM00861 Transketolase, pyrimidine binding domain B34_00586 SM00448 cheY-homologous receiver domain B34_00600 SM01207 B34_00600 B34_00601 SM00881 CoA binding domain B34_00602 SM00387 Histidine kinase-like ATPases B34_00602 SM00433 TopoisomeraseII B34_00603 SM00434 DNA Topoisomerase IV B34_00604 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_00606 SM01007 Class II Aldolase and Adducin N-terminal domain B34_00617 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B34_00620 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_00623 SM00100 Cyclic nucleotide-monophosphate binding domain B34_00623 SM00419 helix_turn_helix, cAMP Regulatory protein B34_00626 SM00100 Cyclic nucleotide-monophosphate binding domain B34_00626 SM00419 helix_turn_helix, cAMP Regulatory protein B34_00630 SM01067 Cellulose binding domain B34_00635 SM00710 Parallel beta-helix repeats B34_00635 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses B34_00637 SM00829 Enoylreductase B34_00638 SM00422 helix_turn_helix, mercury resistance B34_00654 SM00382 ATPases associated with a variety of cellular activities B34_00655 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_00662 SM00354 helix_turn _helix lactose operon repressor B34_00663 SM00226 Low molecular weight phosphatase family B34_00665 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B34_00676 SM00155 Phospholipase D. Active site motifs. B34_00703 SM00878 Biotin carboxylase C-terminal domain B34_00709 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B34_00717 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B34_00729 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_00729 SM00529 Helix-turn-helix diphteria tox regulatory element B34_00730 SM00382 ATPases associated with a variety of cellular activities B34_00731 SM00382 ATPases associated with a variety of cellular activities B34_00733 SM00822 B34_00733 B34_00736 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B34_00737 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_00744 SM00382 ATPases associated with a variety of cellular activities B34_00745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_00745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_00745 SM00319 Homologues of the ligand binding domain of Tar B34_00750 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_00757 SM00849 Metallo-beta-lactamase superfamily B34_00758 SM00871 Bacterial transcription activator, effector binding domain B34_00762 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B34_00763 SM00849 Metallo-beta-lactamase superfamily B34_00777 SM00257 Lysin motif B34_00778 SM00341 Helicase and RNase D C-terminal B34_00778 SM00487 DEAD-like helicases superfamily B34_00778 SM00490 helicase superfamily c-terminal domain B34_00778 SM00956 B34_00778 B34_00787 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B34_00787 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B34_00799 SM00860 SMI1 / KNR4 family B34_00829 SM00861 Transketolase, pyrimidine binding domain B34_00830 SM00327 von Willebrand factor (vWF) type A domain B34_00831 SM00382 ATPases associated with a variety of cellular activities B34_00833 SM00257 Lysin motif B34_00843 SM00822 B34_00843 B34_00849 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_00849 SM00245 tail specific protease B34_00858 SM00014 Acid phosphatase homologues B34_00867 SM00882 Coenzyme A transferase B34_00868 SM00882 Coenzyme A transferase B34_00874 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_00876 SM00267 diguanylate cyclase B34_00886 SM00382 ATPases associated with a variety of cellular activities B34_00896 SM00567 E-Z type HEAT repeats B34_00896 SM00932 Scaffold protein Nfu/NifU N terminal B34_00897 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_00903 SM00357 Cold shock protein domain B34_00910 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B34_00910 SM00475 5'-3' exonuclease B34_00920 SM00491 B34_00920 B34_00923 SM00981 B34_00923 B34_00929 SM00487 DEAD-like helicases superfamily B34_00929 SM00490 helicase superfamily c-terminal domain B34_00938 SM00060 Fibronectin type 3 domain B34_00940 SM00478 endonuclease III B34_00940 SM00525 B34_00940 B34_00946 SM00479 B34_00946 B34_00946 SM00487 DEAD-like helicases superfamily B34_00946 SM00491 B34_00946 B34_00954 SM00851 MGS-like domain B34_00964 SM00914 B34_00964 B34_00965 SM00028 Tetratricopeptide repeats B34_00978 SM00138 Methyltransferase, chemotaxis proteins B34_00979 SM00562 B34_00979 B34_00985 SM00411 bacterial (prokaryotic) histone like domain B34_00991 SM00382 ATPases associated with a variety of cellular activities B34_00996 SM01240 B34_00996 B34_00997 SM00316 Ribosomal protein S1-like RNA-binding domain B34_01003 SM00870 B34_01003 B34_01005 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B34_01009 SM00257 Lysin motif B34_01011 SM00487 DEAD-like helicases superfamily B34_01011 SM00490 helicase superfamily c-terminal domain B34_01016 SM00257 Lysin motif B34_01022 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_01022 SM00387 Histidine kinase-like ATPases B34_01022 SM00388 His Kinase A (phosphoacceptor) domain B34_01023 SM00448 cheY-homologous receiver domain B34_01023 SM00862 Transcriptional regulatory protein, C terminal B34_01024 SM00091 PAS domain B34_01024 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_01024 SM00387 Histidine kinase-like ATPases B34_01024 SM00388 His Kinase A (phosphoacceptor) domain B34_01025 SM00448 cheY-homologous receiver domain B34_01025 SM00862 Transcriptional regulatory protein, C terminal B34_01029 SM00363 S4 RNA-binding domain B34_01032 SM00936 Penicillin-binding protein 5, C-terminal domain B34_01047 SM00028 Tetratricopeptide repeats B34_01061 SM00387 Histidine kinase-like ATPases B34_01063 SM00936 Penicillin-binding protein 5, C-terminal domain B34_01087 SM00704 CDGSH-type zinc finger. Function unknown. B34_01095 SM00382 ATPases associated with a variety of cellular activities B34_01096 SM00382 ATPases associated with a variety of cellular activities B34_01106 SM00382 ATPases associated with a variety of cellular activities B34_01112 SM00849 Metallo-beta-lactamase superfamily B34_01123 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_01123 SM00866 B34_01123 B34_01129 SM00098 Alkaline phosphatase homologues B34_01131 SM01350 B34_01131 B34_01138 SM00382 ATPases associated with a variety of cellular activities B34_01140 SM00062 Bacterial periplasmic substrate-binding proteins B34_01140 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B34_01143 SM00046 Diacylglycerol kinase catalytic domain (presumed) B34_01145 SM00861 Transketolase, pyrimidine binding domain B34_01149 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B34_01151 SM00091 PAS domain B34_01151 SM00382 ATPases associated with a variety of cellular activities B34_01154 SM00646 B34_01154 B34_01158 SM00448 cheY-homologous receiver domain B34_01159 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_01162 SM00363 S4 RNA-binding domain B34_01163 SM00861 Transketolase, pyrimidine binding domain B34_01170 SM00878 Biotin carboxylase C-terminal domain B34_01179 SM00382 ATPases associated with a variety of cellular activities B34_01181 SM00841 Elongation factor P, C-terminal B34_01181 SM01185 B34_01181 B34_01188 SM00529 Helix-turn-helix diphteria tox regulatory element B34_01190 SM00450 Rhodanese Homology Domain B34_01193 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_01193 SM00382 ATPases associated with a variety of cellular activities B34_01197 SM00487 DEAD-like helicases superfamily B34_01197 SM00490 helicase superfamily c-terminal domain B34_01200 SM00530 Helix-turn-helix XRE-family like proteins B34_01214 SM00860 SMI1 / KNR4 family B34_01216 SM00644 B34_01216 B34_01229 SM00257 Lysin motif B34_01251 SM00860 SMI1 / KNR4 family B34_01253 SM00028 Tetratricopeptide repeats B34_01282 SM00530 Helix-turn-helix XRE-family like proteins B34_01283 SM00530 Helix-turn-helix XRE-family like proteins B34_01286 SM00857 Resolvase, N terminal domain B34_01288 SM00382 ATPases associated with a variety of cellular activities B34_01293 SM00849 Metallo-beta-lactamase superfamily B34_01297 SM00631 B34_01297 B34_01303 SM00028 Tetratricopeptide repeats B34_01311 SM00382 ATPases associated with a variety of cellular activities B34_01312 SM00382 ATPases associated with a variety of cellular activities B34_01327 SM00382 ATPases associated with a variety of cellular activities B34_01330 SM00518 AP endonuclease family 2 B34_01331 SM00487 DEAD-like helicases superfamily B34_01331 SM00490 helicase superfamily c-terminal domain B34_01351 SM00400 zinc finger B34_01351 SM00493 B34_01351 B34_01354 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_01363 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_01373 SM01133 B34_01373 B34_01374 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_01377 SM00271 DnaJ molecular chaperone homology domain B34_01381 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_01382 SM00838 Elongation factor G C-terminus B34_01389 SM00849 Metallo-beta-lactamase superfamily B34_01391 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B34_01395 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_01397 SM01103 B34_01397 B34_01405 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B34_01405 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B34_01409 SM01179 B34_01409 B34_01410 SM00382 ATPases associated with a variety of cellular activities B34_01422 SM00450 Rhodanese Homology Domain B34_01422 SM00849 Metallo-beta-lactamase superfamily B34_01424 SM00421 helix_turn_helix, Lux Regulon B34_01424 SM00448 cheY-homologous receiver domain B34_01425 SM00387 Histidine kinase-like ATPases B34_01429 SM00450 Rhodanese Homology Domain B34_01429 SM00849 Metallo-beta-lactamase superfamily B34_01430 SM00450 Rhodanese Homology Domain B34_01436 SM01234 B34_01436 B34_01439 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family B34_01443 SM00421 helix_turn_helix, Lux Regulon B34_01443 SM00448 cheY-homologous receiver domain B34_01449 SM00382 ATPases associated with a variety of cellular activities B34_01450 SM00382 ATPases associated with a variety of cellular activities B34_01451 SM00422 helix_turn_helix, mercury resistance B34_01454 SM00342 helix_turn_helix, arabinose operon control protein B34_01456 SM00014 Acid phosphatase homologues B34_01462 SM00640 Glycosyl hydrolases family 32 B34_01467 SM00382 ATPases associated with a variety of cellular activities B34_01469 SM01059 Chloramphenicol acetyltransferase B34_01470 SM00342 helix_turn_helix, arabinose operon control protein B34_01492 SM00650 Ribosomal RNA adenine dimethylases B34_01503 SM00732 Likely ribonuclease with RNase H fold. B34_01505 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B34_01509 SM00382 ATPases associated with a variety of cellular activities B34_01510 SM00028 Tetratricopeptide repeats B34_01514 SM00382 ATPases associated with a variety of cellular activities B34_01519 SM00287 Bacterial SH3 domain homologues B34_01519 SM00646 B34_01519 B34_01521 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_01521 SM00954 Region found in RelA / SpoT proteins B34_01530 SM01323 B34_01530 B34_01534 SM00382 ATPases associated with a variety of cellular activities B34_01535 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B34_01546 SM00257 Lysin motif B34_01555 SM01317 B34_01555 B34_01562 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B34_01576 SM00257 Lysin motif B34_01578 SM01004 Delta-aminolevulinic acid dehydratase B34_01585 SM00382 ATPases associated with a variety of cellular activities B34_01585 SM00464 Found in ATP-dependent protease La (LON) B34_01586 SM00382 ATPases associated with a variety of cellular activities B34_01587 SM00382 ATPases associated with a variety of cellular activities B34_01587 SM00994 ClpX C4-type zinc finger B34_01587 SM01086 C-terminal, D2-small domain, of ClpB protein B34_01592 SM01329 B34_01592 B34_01593 SM00917 LeuA allosteric (dimerisation) domain B34_01599 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B34_01611 SM00028 Tetratricopeptide repeats B34_01619 SM00909 Sporulation and spore germination B34_01621 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_01622 SM00421 helix_turn_helix, Lux Regulon B34_01630 SM00465 GIY-YIG type nucleases (URI domain) B34_01632 SM00893 Electron transfer flavoprotein domain B34_01633 SM00893 Electron transfer flavoprotein domain B34_01638 SM00463 Small MutS-related domain B34_01638 SM00533 DNA-binding domain of DNA mismatch repair MUTS family B34_01638 SM00534 ATPase domain of DNA mismatch repair MUTS family B34_01639 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B34_01639 SM00481 DNA polymerase alpha chain like domain B34_01639 SM00483 DNA polymerase X family B34_01646 SM00382 ATPases associated with a variety of cellular activities B34_01649 SM00873 B3/4 domain B34_01649 SM00874 tRNA synthetase B5 domain B34_01649 SM00896 Ferredoxin-fold anticodon binding domain B34_01651 SM00967 RNA 2'-O ribose methyltransferase substrate binding B34_01655 SM00813 Alpha-L-arabinofuranosidase C-terminus B34_01660 SM01007 Class II Aldolase and Adducin N-terminal domain B34_01674 SM00448 cheY-homologous receiver domain B34_01674 SM00850 LytTr DNA-binding domain B34_01675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B34_01675 SM00387 Histidine kinase-like ATPases B34_01678 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B34_01681 SM00382 ATPases associated with a variety of cellular activities B34_01686 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B34_01687 SM00656 B34_01687 B34_01690 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain B34_01690 SM01232 B34_01690 B34_01691 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B34_01691 SM00474 3'-5' exonuclease B34_01691 SM00475 5'-3' exonuclease B34_01691 SM00482 DNA polymerase A domain B34_01692 SM00091 PAS domain B34_01692 SM00387 Histidine kinase-like ATPases B34_01692 SM00388 His Kinase A (phosphoacceptor) domain B34_01693 SM00448 cheY-homologous receiver domain B34_01693 SM00862 Transcriptional regulatory protein, C terminal B34_01695 SM01329 B34_01695 B34_01704 SM00919 Malic enzyme, NAD binding domain B34_01704 SM01274 B34_01704 B34_01705 SM00481 DNA polymerase alpha chain like domain B34_01711 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_01713 SM00849 Metallo-beta-lactamase superfamily B34_01718 SM00852 Probable molybdopterin binding domain B34_01730 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_01733 SM00981 B34_01733 B34_01741 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B34_01742 SM00267 diguanylate cyclase B34_01744 SM00363 S4 RNA-binding domain B34_01744 SM01390 B34_01744 B34_01750 SM00344 helix_turn_helix ASNC type B34_01752 SM00363 S4 RNA-binding domain B34_01755 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_01759 SM00354 helix_turn _helix lactose operon repressor B34_01760 SM00830 Chorismate mutase type II B34_01767 SM00382 ATPases associated with a variety of cellular activities B34_01767 SM00843 B34_01767 B34_01774 SM00919 Malic enzyme, NAD binding domain B34_01774 SM01274 B34_01774 B34_01775 SM00849 Metallo-beta-lactamase superfamily B34_01779 SM00642 Alpha-amylase domain B34_01781 SM00046 Diacylglycerol kinase catalytic domain (presumed) B34_01788 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_01789 SM00363 S4 RNA-binding domain B34_01794 SM00450 Rhodanese Homology Domain B34_01796 SM00028 Tetratricopeptide repeats B34_01803 SM00342 helix_turn_helix, arabinose operon control protein B34_01817 SM00382 ATPases associated with a variety of cellular activities B34_01819 SM00382 ATPases associated with a variety of cellular activities B34_01820 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_01823 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_01829 SM00014 Acid phosphatase homologues B34_01838 SM00382 ATPases associated with a variety of cellular activities B34_01847 SM01234 B34_01847 B34_01848 SM00947 Carbonic anhydrase B34_01849 SM00833 Cobalamin synthesis protein cobW C-terminal domain B34_01856 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B34_01868 SM00642 Alpha-amylase domain B34_01893 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_01898 SM00028 Tetratricopeptide repeats B34_01911 SM01005 Alanine racemase, C-terminal domain B34_01912 SM00835 Cupin B34_01930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_01930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_01930 SM00319 Homologues of the ligand binding domain of Tar B34_01931 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_01931 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_01931 SM00319 Homologues of the ligand binding domain of Tar B34_01932 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_01932 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_01932 SM00319 Homologues of the ligand binding domain of Tar B34_01936 SM00642 Alpha-amylase domain B34_01940 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_01940 SM01091 Transporter associated domain B34_01952 SM00316 Ribosomal protein S1-like RNA-binding domain B34_01954 SM00344 helix_turn_helix ASNC type B34_01961 SM01298 B34_01961 B34_01962 SM00479 B34_01962 B34_01967 SM00091 PAS domain B34_01967 SM00387 Histidine kinase-like ATPases B34_01968 SM00448 cheY-homologous receiver domain B34_01982 SM00421 helix_turn_helix, Lux Regulon B34_01982 SM00448 cheY-homologous receiver domain B34_01983 SM00387 Histidine kinase-like ATPases B34_01989 SM00052 Putative diguanylate phosphodiesterase B34_01999 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_02009 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B34_02009 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B34_02030 SM00028 Tetratricopeptide repeats B34_02046 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_02067 SM01092 CO dehydrogenase flavoprotein C-terminal domain B34_02072 SM00028 Tetratricopeptide repeats B34_02077 SM00382 ATPases associated with a variety of cellular activities B34_02082 SM00382 ATPases associated with a variety of cellular activities B34_02082 SM00930 B34_02082 B34_02085 SM00493 B34_02085 B34_02097 SM00382 ATPases associated with a variety of cellular activities B34_02106 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_02107 SM00448 cheY-homologous receiver domain B34_02107 SM00862 Transcriptional regulatory protein, C terminal B34_02108 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_02108 SM00387 Histidine kinase-like ATPases B34_02108 SM00388 His Kinase A (phosphoacceptor) domain B34_02117 SM00421 helix_turn_helix, Lux Regulon B34_02117 SM00448 cheY-homologous receiver domain B34_02118 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_02118 SM00387 Histidine kinase-like ATPases B34_02129 SM01130 B34_02129 B34_02130 SM00382 ATPases associated with a variety of cellular activities B34_02133 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_02133 SM00895 B34_02133 B34_02137 SM00710 Parallel beta-helix repeats B34_02138 SM00858 B34_02138 B34_02140 SM00354 helix_turn _helix lactose operon repressor B34_02143 SM00387 Histidine kinase-like ATPases B34_02143 SM00388 His Kinase A (phosphoacceptor) domain B34_02144 SM00448 cheY-homologous receiver domain B34_02144 SM00862 Transcriptional regulatory protein, C terminal B34_02145 SM00382 ATPases associated with a variety of cellular activities B34_02168 SM00606 Cellulose Binding Domain Type IV B34_02168 SM01217 B34_02168 B34_02169 SM00382 ATPases associated with a variety of cellular activities B34_02184 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_02184 SM01134 B34_02184 B34_02188 SM01007 Class II Aldolase and Adducin N-terminal domain B34_02194 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_02200 SM00450 Rhodanese Homology Domain B34_02204 SM00835 Cupin B34_02221 SM00257 Lysin motif B34_02221 SM00641 Glycosyl hydrolases family 25 B34_02228 SM00047 Lysozyme subfamily 2 B34_02244 SM00507 HNH nucleases B34_02254 SM00891 ERCC4 domain B34_02257 SM00885 D5 N terminal like B34_02270 SM00530 Helix-turn-helix XRE-family like proteins B34_02273 SM00530 Helix-turn-helix XRE-family like proteins B34_02277 SM00316 Ribosomal protein S1-like RNA-binding domain B34_02277 SM00357 Cold shock protein domain B34_02277 SM00955 B34_02277 B34_02280 SM00966 SpoVT / AbrB like domain B34_02281 SM00530 Helix-turn-helix XRE-family like proteins B34_02282 SM00530 Helix-turn-helix XRE-family like proteins B34_02283 SM00530 Helix-turn-helix XRE-family like proteins B34_02287 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_02287 SM00382 ATPases associated with a variety of cellular activities B34_02297 SM01192 B34_02297 B34_02297 SM01193 B34_02297 B34_02301 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B34_02306 SM00382 ATPases associated with a variety of cellular activities B34_02311 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_02311 SM00895 B34_02311 B34_02330 SM00530 Helix-turn-helix XRE-family like proteins B34_02338 SM01130 B34_02338 B34_02343 SM00640 Glycosyl hydrolases family 32 B34_02349 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_02351 SM00947 Carbonic anhydrase B34_02354 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B34_02364 SM00028 Tetratricopeptide repeats B34_02381 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_02390 SM00382 ATPases associated with a variety of cellular activities B34_02391 SM00487 DEAD-like helicases superfamily B34_02391 SM00490 helicase superfamily c-terminal domain B34_02394 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_02396 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_02396 SM00245 tail specific protease B34_02397 SM01329 B34_02397 B34_02400 SM00382 ATPases associated with a variety of cellular activities B34_02403 SM00937 B34_02403 B34_02404 SM00957 SecA DEAD-like domain B34_02404 SM00958 SecA preprotein cross-linking domain B34_02421 SM00487 DEAD-like helicases superfamily B34_02421 SM00490 helicase superfamily c-terminal domain B34_02423 SM00421 helix_turn_helix, Lux Regulon B34_02423 SM00448 cheY-homologous receiver domain B34_02424 SM00387 Histidine kinase-like ATPases B34_02434 SM00984 UDP binding domain B34_02438 SM00646 B34_02438 B34_02444 SM00382 ATPases associated with a variety of cellular activities B34_02457 SM00047 Lysozyme subfamily 2 B34_02457 SM00287 Bacterial SH3 domain homologues B34_02474 SM00854 Bacterial capsule synthesis protein PGA_cap B34_02477 SM00354 helix_turn _helix lactose operon repressor B34_02480 SM00382 ATPases associated with a variety of cellular activities B34_02489 SM00344 helix_turn_helix ASNC type B34_02496 SM00487 DEAD-like helicases superfamily B34_02496 SM00490 helicase superfamily c-terminal domain B34_02499 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_02499 SM01134 B34_02499 B34_02516 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_02518 SM00014 Acid phosphatase homologues B34_02519 SM01131 B34_02519 B34_02522 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_02524 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_02524 SM01091 Transporter associated domain B34_02526 SM00938 Nitrogen regulatory protein P-II B34_02532 SM00155 Phospholipase D. Active site motifs. B34_02534 SM00923 MbtH-like protein B34_02535 SM00823 Phosphopantetheine attachment site B34_02535 SM00824 Thioesterase B34_02539 SM00822 B34_02539 B34_02544 SM00342 helix_turn_helix, arabinose operon control protein B34_02550 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_02554 SM00327 von Willebrand factor (vWF) type A domain B34_02555 SM00327 von Willebrand factor (vWF) type A domain B34_02561 SM00382 ATPases associated with a variety of cellular activities B34_02573 SM00226 Low molecular weight phosphatase family B34_02582 SM00354 helix_turn _helix lactose operon repressor B34_02584 SM00937 B34_02584 B34_02588 SM00919 Malic enzyme, NAD binding domain B34_02588 SM01274 B34_02588 B34_02591 SM00357 Cold shock protein domain B34_02591 SM00382 ATPases associated with a variety of cellular activities B34_02591 SM00959 Rho termination factor, N-terminal domain B34_02596 SM00448 cheY-homologous receiver domain B34_02608 SM00155 Phospholipase D. Active site motifs. B34_02610 SM00836 DALR anticodon binding domain B34_02610 SM01016 Arginyl tRNA synthetase N terminal dom B34_02622 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_02633 SM00346 helix_turn_helix isocitrate lyase regulation B34_02642 SM00382 ATPases associated with a variety of cellular activities B34_02644 SM00421 helix_turn_helix, Lux Regulon B34_02644 SM00448 cheY-homologous receiver domain B34_02649 SM00986 Uracil DNA glycosylase superfamily B34_02649 SM00987 UreE urease accessory protein, C-terminal domain B34_02653 SM00640 Glycosyl hydrolases family 32 B34_02655 SM01061 CAT RNA binding domain B34_02671 SM00382 ATPases associated with a variety of cellular activities B34_02672 SM00382 ATPases associated with a variety of cellular activities B34_02676 SM00421 helix_turn_helix, Lux Regulon B34_02676 SM00448 cheY-homologous receiver domain B34_02701 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B34_02707 SM00387 Histidine kinase-like ATPases B34_02708 SM00421 helix_turn_helix, Lux Regulon B34_02708 SM00448 cheY-homologous receiver domain B34_02712 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B34_02715 SM00346 helix_turn_helix isocitrate lyase regulation B34_02719 SM00954 Region found in RelA / SpoT proteins B34_02735 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_02735 SM00895 B34_02735 B34_02741 SM00382 ATPases associated with a variety of cellular activities B34_02747 SM00382 ATPases associated with a variety of cellular activities B34_02753 SM01060 B34_02753 B34_02754 SM01060 B34_02754 B34_02758 SM00382 ATPases associated with a variety of cellular activities B34_02761 SM00382 ATPases associated with a variety of cellular activities B34_02763 SM00530 Helix-turn-helix XRE-family like proteins B34_02766 SM00382 ATPases associated with a variety of cellular activities B34_02767 SM01260 B34_02767 B34_02770 SM01260 B34_02770 B34_02771 SM00656 B34_02771 B34_02773 SM00382 ATPases associated with a variety of cellular activities B34_02774 SM00382 ATPases associated with a variety of cellular activities B34_02779 SM00919 Malic enzyme, NAD binding domain B34_02779 SM01274 B34_02779 B34_02782 SM00870 B34_02782 B34_02783 SM00530 Helix-turn-helix XRE-family like proteins B34_02785 SM00448 cheY-homologous receiver domain B34_02785 SM00862 Transcriptional regulatory protein, C terminal B34_02786 SM00387 Histidine kinase-like ATPases B34_02787 SM00382 ATPases associated with a variety of cellular activities B34_02798 SM00894 Excalibur calcium-binding domain B34_02808 SM00100 Cyclic nucleotide-monophosphate binding domain B34_02808 SM00419 helix_turn_helix, cAMP Regulatory protein B34_02817 SM00382 ATPases associated with a variety of cellular activities B34_02819 SM00640 Glycosyl hydrolases family 32 B34_02824 SM00354 helix_turn _helix lactose operon repressor B34_02834 SM01060 B34_02834 B34_02835 SM00871 Bacterial transcription activator, effector binding domain B34_02838 SM01061 CAT RNA binding domain B34_02840 SM00382 ATPases associated with a variety of cellular activities B34_02849 SM00382 ATPases associated with a variety of cellular activities B34_02850 SM00387 Histidine kinase-like ATPases B34_02851 SM00448 cheY-homologous receiver domain B34_02851 SM00862 Transcriptional regulatory protein, C terminal B34_02859 SM00487 DEAD-like helicases superfamily B34_02859 SM00490 helicase superfamily c-terminal domain B34_02865 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain B34_02867 SM01133 B34_02867 B34_02871 SM00267 diguanylate cyclase B34_02891 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_02891 SM01134 B34_02891 B34_02895 SM00387 Histidine kinase-like ATPases B34_02896 SM00382 ATPases associated with a variety of cellular activities B34_02905 SM00899 B34_02905 B34_02908 SM00382 ATPases associated with a variety of cellular activities B34_02909 SM00387 Histidine kinase-like ATPases B34_02909 SM00388 His Kinase A (phosphoacceptor) domain B34_02910 SM00448 cheY-homologous receiver domain B34_02910 SM00862 Transcriptional regulatory protein, C terminal B34_02912 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_02912 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_02914 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B34_02914 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B34_02920 SM00354 helix_turn _helix lactose operon repressor B34_02924 SM00419 helix_turn_helix, cAMP Regulatory protein B34_02925 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_02925 SM00895 B34_02925 B34_02928 SM01350 B34_02928 B34_02934 SM00465 GIY-YIG type nucleases (URI domain) B34_02936 SM00382 ATPases associated with a variety of cellular activities B34_02940 SM00421 helix_turn_helix, Lux Regulon B34_02940 SM00448 cheY-homologous receiver domain B34_02943 SM00382 ATPases associated with a variety of cellular activities B34_02952 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_02953 SM00849 Metallo-beta-lactamase superfamily B34_02956 SM00091 PAS domain B34_02956 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_02956 SM00387 Histidine kinase-like ATPases B34_02956 SM00388 His Kinase A (phosphoacceptor) domain B34_02957 SM00448 cheY-homologous receiver domain B34_02957 SM00862 Transcriptional regulatory protein, C terminal B34_02963 SM00788 Adenylosuccinate synthetase B34_02965 SM00382 ATPases associated with a variety of cellular activities B34_02972 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_02972 SM00866 B34_02972 B34_02976 SM00267 diguanylate cyclase B34_02989 SM00470 ParB-like nuclease domain B34_02993 SM00470 ParB-like nuclease domain B34_02995 SM01228 B34_02995 B34_02997 SM00393 Putative single-stranded nucleic acids-binding domain B34_02997 SM01245 B34_02997 B34_03000 SM00382 ATPases associated with a variety of cellular activities B34_03000 SM00760 Bacterial dnaA protein helix-turn-helix domain B34_03001 SM00480 DNA polymerase III beta subunit B34_03004 SM00387 Histidine kinase-like ATPases B34_03004 SM00433 TopoisomeraseII B34_03005 SM00434 DNA Topoisomerase IV B34_03012 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_03012 SM01240 B34_03012 B34_03013 SM00936 Penicillin-binding protein 5, C-terminal domain B34_03020 SM00860 SMI1 / KNR4 family B34_03024 SM00257 Lysin motif B34_03024 SM00636 B34_03024 B34_03027 SM00382 ATPases associated with a variety of cellular activities B34_03029 SM00493 B34_03029 B34_03048 SM00465 GIY-YIG type nucleases (URI domain) B34_03050 SM00966 SpoVT / AbrB like domain B34_03053 SM01208 B34_03053 B34_03054 SM00493 B34_03054 B34_03055 SM00650 Ribosomal RNA adenine dimethylases B34_03065 SM01400 B34_03065 B34_03069 SM00487 DEAD-like helicases superfamily B34_03069 SM00490 helicase superfamily c-terminal domain B34_03069 SM00982 B34_03069 B34_03069 SM01058 CarD-like/TRCF domain B34_03070 SM00966 SpoVT / AbrB like domain B34_03073 SM00363 S4 RNA-binding domain B34_03077 SM00316 Ribosomal protein S1-like RNA-binding domain B34_03080 SM00331 Sigma factor PP2C-like phosphatases B34_03080 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain B34_03082 SM00220 Serine/Threonine protein kinases, catalytic domain B34_03083 SM00977 TilS substrate C-terminal domain B34_03085 SM00382 ATPases associated with a variety of cellular activities B34_03094 SM00905 Dihydroneopterin aldolase B34_03096 SM00530 Helix-turn-helix XRE-family like proteins B34_03117 SM00382 ATPases associated with a variety of cellular activities B34_03117 SM01086 C-terminal, D2-small domain, of ClpB protein B34_03118 SM00382 ATPases associated with a variety of cellular activities B34_03120 SM00670 Large family of predicted nucleotide-binding domains B34_03125 SM00840 B34_03125 B34_03126 SM00535 Ribonuclease III family B34_03127 SM00967 RNA 2'-O ribose methyltransferase substrate binding B34_03131 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. B34_03131 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. B34_03132 SM00649 Ribosomal protein L11/L12 B34_03138 SM00663 RNA polymerase I subunit A N-terminus B34_03142 SM00838 Elongation factor G C-terminus B34_03142 SM00889 Elongation factor G, domain IV B34_03144 SM01403 B34_03144 B34_03148 SM01382 B34_03148 B34_03148 SM01383 B34_03148 B34_03151 SM00322 K homology RNA-binding domain B34_03155 SM01374 B34_03155 B34_03156 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. B34_03169 SM00316 Ribosomal protein S1-like RNA-binding domain B34_03173 SM00662 RNA polymerases D B34_03175 SM00382 ATPases associated with a variety of cellular activities B34_03176 SM00382 ATPases associated with a variety of cellular activities B34_03185 SM00382 ATPases associated with a variety of cellular activities B34_03186 SM00530 Helix-turn-helix XRE-family like proteins B34_03189 SM00382 ATPases associated with a variety of cellular activities B34_03191 SM00382 ATPases associated with a variety of cellular activities B34_03192 SM01260 B34_03192 B34_03194 SM01260 B34_03194 B34_03196 SM00387 Histidine kinase-like ATPases B34_03197 SM00793 Accessory gene regulator B B34_03199 SM00448 cheY-homologous receiver domain B34_03199 SM00850 LytTr DNA-binding domain B34_03201 SM00646 B34_03201 B34_03204 SM01251 B34_03204 B34_03238 SM00382 ATPases associated with a variety of cellular activities B34_03239 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_03240 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B34_03243 SM00382 ATPases associated with a variety of cellular activities B34_03253 SM00448 cheY-homologous receiver domain B34_03254 SM00091 PAS domain B34_03254 SM00387 Histidine kinase-like ATPases B34_03273 SM00342 helix_turn_helix, arabinose operon control protein B34_03275 SM00530 Helix-turn-helix XRE-family like proteins B34_03276 SM00421 helix_turn_helix, Lux Regulon B34_03278 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_03278 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_03288 SM00422 helix_turn_helix, mercury resistance B34_03294 SM00387 Histidine kinase-like ATPases B34_03295 SM00448 cheY-homologous receiver domain B34_03303 SM01130 B34_03303 B34_03306 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B34_03307 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_03307 SM00895 B34_03307 B34_03308 SM00858 B34_03308 B34_03309 SM00448 cheY-homologous receiver domain B34_03309 SM00862 Transcriptional regulatory protein, C terminal B34_03310 SM00387 Histidine kinase-like ATPases B34_03310 SM00388 His Kinase A (phosphoacceptor) domain B34_03311 SM00382 ATPases associated with a variety of cellular activities B34_03317 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_03319 SM00093 SERine Proteinase INhibitors B34_03322 SM00422 helix_turn_helix, mercury resistance B34_03330 SM00382 ATPases associated with a variety of cellular activities B34_03333 SM00448 cheY-homologous receiver domain B34_03333 SM00862 Transcriptional regulatory protein, C terminal B34_03334 SM00387 Histidine kinase-like ATPases B34_03334 SM00388 His Kinase A (phosphoacceptor) domain B34_03337 SM00822 B34_03337 B34_03353 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_03353 SM00866 B34_03353 B34_03355 SM00060 Fibronectin type 3 domain B34_03355 SM00495 Chitin-binding domain type 3 B34_03355 SM00636 B34_03355 B34_03357 SM00636 B34_03357 B34_03362 SM00450 Rhodanese Homology Domain B34_03368 SM00382 ATPases associated with a variety of cellular activities B34_03383 SM00422 helix_turn_helix, mercury resistance B34_03399 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_03403 SM00062 Bacterial periplasmic substrate-binding proteins B34_03405 SM00382 ATPases associated with a variety of cellular activities B34_03409 SM00219 Tyrosine kinase, catalytic domain B34_03410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_03411 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_03416 SM00382 ATPases associated with a variety of cellular activities B34_03419 SM00823 Phosphopantetheine attachment site B34_03420 SM00823 Phosphopantetheine attachment site B34_03421 SM00823 Phosphopantetheine attachment site B34_03424 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_03430 SM00382 ATPases associated with a variety of cellular activities B34_03434 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_03434 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_03435 SM00382 ATPases associated with a variety of cellular activities B34_03437 SM00062 Bacterial periplasmic substrate-binding proteins B34_03438 SM00382 ATPases associated with a variety of cellular activities B34_03458 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_03458 SM00387 Histidine kinase-like ATPases B34_03459 SM00342 helix_turn_helix, arabinose operon control protein B34_03459 SM00448 cheY-homologous receiver domain B34_03461 SM00382 ATPases associated with a variety of cellular activities B34_03464 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_03468 SM00710 Parallel beta-helix repeats B34_03473 SM00422 helix_turn_helix, mercury resistance B34_03475 SM00382 ATPases associated with a variety of cellular activities B34_03477 SM00448 cheY-homologous receiver domain B34_03477 SM00862 Transcriptional regulatory protein, C terminal B34_03478 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_03478 SM00387 Histidine kinase-like ATPases B34_03478 SM00388 His Kinase A (phosphoacceptor) domain B34_03479 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_03479 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_03483 SM00382 ATPases associated with a variety of cellular activities B34_03490 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B34_03491 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_03499 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_03501 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B34_03505 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_03505 SM00895 B34_03505 B34_03512 SM00861 Transketolase, pyrimidine binding domain B34_03517 SM00796 Allophanate hydrolase subunit 1 B34_03518 SM00797 Allophanate hydrolase subunit 2 B34_03519 SM00346 helix_turn_helix isocitrate lyase regulation B34_03533 SM00344 helix_turn_helix ASNC type B34_03534 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B34_03534 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B34_03534 SM00493 B34_03534 B34_03553 SM00382 ATPases associated with a variety of cellular activities B34_03563 SM00487 DEAD-like helicases superfamily B34_03563 SM00490 helicase superfamily c-terminal domain B34_03568 SM01005 Alanine racemase, C-terminal domain B34_03573 SM00387 Histidine kinase-like ATPases B34_03574 SM00331 Sigma factor PP2C-like phosphatases B34_03576 SM00387 Histidine kinase-like ATPases B34_03578 SM00331 Sigma factor PP2C-like phosphatases B34_03579 SM00316 Ribosomal protein S1-like RNA-binding domain B34_03579 SM00732 Likely ribonuclease with RNase H fold. B34_03582 SM00731 SprT homologues. B34_03592 SM00530 Helix-turn-helix XRE-family like proteins B34_03612 SM00028 Tetratricopeptide repeats B34_03616 SM00530 Helix-turn-helix XRE-family like proteins B34_03618 SM00357 Cold shock protein domain B34_03619 SM00829 Enoylreductase B34_03622 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_03640 SM00387 Histidine kinase-like ATPases B34_03640 SM00388 His Kinase A (phosphoacceptor) domain B34_03640 SM00448 cheY-homologous receiver domain B34_03641 SM00448 cheY-homologous receiver domain B34_03641 SM00862 Transcriptional regulatory protein, C terminal B34_03657 SM00382 ATPases associated with a variety of cellular activities B34_03659 SM00881 CoA binding domain B34_03664 SM00883 Chaperonin 10 Kd subunit B34_03689 SM00530 Helix-turn-helix XRE-family like proteins B34_03693 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_03696 SM00642 Alpha-amylase domain B34_03698 SM00354 helix_turn _helix lactose operon repressor B34_03699 SM00642 Alpha-amylase domain B34_03705 SM00642 Alpha-amylase domain B34_03707 SM00363 S4 RNA-binding domain B34_03708 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_03719 SM00342 helix_turn_helix, arabinose operon control protein B34_03719 SM00871 Bacterial transcription activator, effector binding domain B34_03726 SM00460 Transglutaminase/protease-like homologues B34_03733 SM01001 AIR carboxylase B34_03735 SM00998 Adenylosuccinate lyase C-terminus B34_03738 SM01211 B34_03738 B34_03743 SM00798 AICARFT/IMPCHase bienzyme B34_03743 SM00851 MGS-like domain B34_03744 SM01209 B34_03744 B34_03744 SM01210 B34_03744 B34_03756 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B34_03756 SM00292 breast cancer carboxy-terminal domain B34_03756 SM00532 Ligase N family B34_03772 SM00845 GatB domain B34_03781 SM00046 Diacylglycerol kinase catalytic domain (presumed) B34_03786 SM01061 CAT RNA binding domain B34_03787 SM00028 Tetratricopeptide repeats B34_03792 SM00530 Helix-turn-helix XRE-family like proteins B34_03795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_03797 SM00382 ATPases associated with a variety of cellular activities B34_03803 SM00833 Cobalamin synthesis protein cobW C-terminal domain B34_03808 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_03808 SM00876 Biotin and Thiamin Synthesis associated domain B34_03811 SM00422 helix_turn_helix, mercury resistance B34_03813 SM00382 ATPases associated with a variety of cellular activities B34_03814 SM00487 DEAD-like helicases superfamily B34_03814 SM00490 helicase superfamily c-terminal domain B34_03815 SM00829 Enoylreductase B34_03819 SM00849 Metallo-beta-lactamase superfamily B34_03820 SM00849 Metallo-beta-lactamase superfamily B34_03821 SM00631 B34_03821 B34_03824 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B34_03834 SM00642 Alpha-amylase domain B34_03835 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_03835 SM00866 B34_03835 B34_03845 SM00028 Tetratricopeptide repeats B34_03848 SM00984 UDP binding domain B34_03856 SM00226 Low molecular weight phosphatase family B34_03870 SM00478 endonuclease III B34_03881 SM01061 CAT RNA binding domain B34_03889 SM00861 Transketolase, pyrimidine binding domain B34_03892 SM00382 ATPases associated with a variety of cellular activities B34_03904 SM00342 helix_turn_helix, arabinose operon control protein B34_03927 SM00478 endonuclease III B34_03927 SM00525 B34_03927 B34_03933 SM00382 ATPases associated with a variety of cellular activities B34_03934 SM00382 ATPases associated with a variety of cellular activities B34_03935 SM00382 ATPases associated with a variety of cellular activities B34_03966 SM00530 Helix-turn-helix XRE-family like proteins B34_03967 SM00530 Helix-turn-helix XRE-family like proteins B34_03975 SM00382 ATPases associated with a variety of cellular activities B34_03994 SM00507 HNH nucleases B34_04012 SM00047 Lysozyme subfamily 2 B34_04013 SM00710 Parallel beta-helix repeats B34_04019 SM00257 Lysin motif B34_04019 SM00641 Glycosyl hydrolases family 25 B34_04022 SM00028 Tetratricopeptide repeats B34_04035 SM00028 Tetratricopeptide repeats B34_04039 SM00382 ATPases associated with a variety of cellular activities B34_04040 SM00062 Bacterial periplasmic substrate-binding proteins B34_04044 SM00530 Helix-turn-helix XRE-family like proteins B34_04046 SM00382 ATPases associated with a variety of cellular activities B34_04053 SM00567 E-Z type HEAT repeats B34_04059 SM00763 PrkA AAA domain B34_04066 SM00382 ATPases associated with a variety of cellular activities B34_04070 SM00357 Cold shock protein domain B34_04071 SM00382 ATPases associated with a variety of cellular activities B34_04071 SM00930 B34_04071 B34_04080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B34_04080 SM00091 PAS domain B34_04080 SM00387 Histidine kinase-like ATPases B34_04080 SM00388 His Kinase A (phosphoacceptor) domain B34_04081 SM00318 Staphylococcal nuclease homologues B34_04085 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_04089 SM00382 ATPases associated with a variety of cellular activities B34_04092 SM00829 Enoylreductase B34_04100 SM00530 Helix-turn-helix XRE-family like proteins B34_04101 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B34_04101 SM00387 Histidine kinase-like ATPases B34_04102 SM00421 helix_turn_helix, Lux Regulon B34_04102 SM00448 cheY-homologous receiver domain B34_04109 SM00257 Lysin motif B34_04116 SM00342 helix_turn_helix, arabinose operon control protein B34_04116 SM00871 Bacterial transcription activator, effector binding domain B34_04117 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_04124 SM00563 Phosphate acyltransferases B34_04129 SM01091 Transporter associated domain B34_04130 SM00422 helix_turn_helix, mercury resistance B34_04132 SM01091 Transporter associated domain B34_04135 SM00646 B34_04135 B34_04152 SM00382 ATPases associated with a variety of cellular activities B34_04153 SM00382 ATPases associated with a variety of cellular activities B34_04158 SM00382 ATPases associated with a variety of cellular activities B34_04166 SM00729 Elongator protein 3, MiaB family, Radical SAM B34_04171 SM00028 Tetratricopeptide repeats B34_04175 SM00382 ATPases associated with a variety of cellular activities B34_04179 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B34_04185 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_04191 SM00382 ATPases associated with a variety of cellular activities B34_04208 SM00849 Metallo-beta-lactamase superfamily B34_04212 SM00530 Helix-turn-helix XRE-family like proteins B34_04221 SM00855 Phosphoglycerate mutase family B34_04222 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_04225 SM00914 B34_04225 B34_04250 SM00354 helix_turn _helix lactose operon repressor B34_04262 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_04262 SM00387 Histidine kinase-like ATPases B34_04262 SM00388 His Kinase A (phosphoacceptor) domain B34_04263 SM00448 cheY-homologous receiver domain B34_04263 SM00862 Transcriptional regulatory protein, C terminal B34_04289 SM00938 Nitrogen regulatory protein P-II B34_04291 SM00342 helix_turn_helix, arabinose operon control protein B34_04293 SM00354 helix_turn _helix lactose operon repressor B34_04301 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_04305 SM01006 Siderophore biosynthesis protein domain B34_04310 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_04311 SM01018 B12 binding domain B34_04314 SM00316 Ribosomal protein S1-like RNA-binding domain B34_04320 SM01240 B34_04320 B34_04325 SM00859 Semialdehyde dehydrogenase, NAD binding domain B34_04329 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain B34_04330 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B34_04341 SM00825 Beta-ketoacyl synthase B34_04343 SM00382 ATPases associated with a variety of cellular activities B34_04344 SM00382 ATPases associated with a variety of cellular activities B34_04356 SM00382 ATPases associated with a variety of cellular activities B34_04357 SM00382 ATPases associated with a variety of cellular activities B34_04365 SM00448 cheY-homologous receiver domain B34_04366 SM00091 PAS domain B34_04366 SM00387 Histidine kinase-like ATPases B34_04373 SM01118 B34_04373 B34_04375 SM00954 Region found in RelA / SpoT proteins B34_04412 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_04418 SM01266 B34_04418 B34_04427 SM00257 Lysin motif B34_04436 SM00530 Helix-turn-helix XRE-family like proteins B34_04437 SM00530 Helix-turn-helix XRE-family like proteins B34_04440 SM00382 ATPases associated with a variety of cellular activities B34_04460 SM00257 Lysin motif B34_04471 SM00644 B34_04471 B34_04472 SM00345 helix_turn_helix gluconate operon transcriptional repressor B34_04472 SM00895 B34_04472 B34_04473 SM00829 Enoylreductase B34_04485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_04485 SM00387 Histidine kinase-like ATPases B34_04486 SM00342 helix_turn_helix, arabinose operon control protein B34_04486 SM00448 cheY-homologous receiver domain B34_04491 SM00342 helix_turn_helix, arabinose operon control protein B34_04509 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B34_04514 SM00382 ATPases associated with a variety of cellular activities B34_04517 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B34_04519 SM00382 ATPases associated with a variety of cellular activities B34_04523 SM00656 B34_04523 B34_04532 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B34_04535 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_04539 SM00855 Phosphoglycerate mutase family B34_04545 SM00116 Domain in cystathionine beta-synthase and other proteins. B34_04545 SM00924 MgtE intracellular N domain B34_04547 SM00422 helix_turn_helix, mercury resistance B34_04551 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_04553 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen B34_04554 SM00267 diguanylate cyclase B34_04567 SM00091 PAS domain B34_04567 SM00387 Histidine kinase-like ATPases B34_04567 SM00388 His Kinase A (phosphoacceptor) domain B34_04575 SM01007 Class II Aldolase and Adducin N-terminal domain B34_04580 SM00387 Histidine kinase-like ATPases B34_04580 SM00388 His Kinase A (phosphoacceptor) domain B34_04581 SM00347 helix_turn_helix multiple antibiotic resistance protein B34_04584 SM00382 ATPases associated with a variety of cellular activities B34_04584 SM01086 C-terminal, D2-small domain, of ClpB protein B34_04599 SM00530 Helix-turn-helix XRE-family like proteins B34_04602 SM00530 Helix-turn-helix XRE-family like proteins B34_04608 SM00530 Helix-turn-helix XRE-family like proteins B34_04635 SM00507 HNH nucleases B34_04644 SM00257 Lysin motif B34_04644 SM00644 B34_04644 B34_04647 SM00530 Helix-turn-helix XRE-family like proteins B34_04654 SM00028 Tetratricopeptide repeats B34_04657 SM00530 Helix-turn-helix XRE-family like proteins B34_04673 SM00354 helix_turn _helix lactose operon repressor B34_04674 SM01061 CAT RNA binding domain B34_04681 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B34_04681 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B34_04686 SM00091 PAS domain B34_04686 SM00387 Histidine kinase-like ATPases B34_04686 SM00388 His Kinase A (phosphoacceptor) domain B34_04691 SM00260 Two component signalling adaptor domain B34_04691 SM00448 cheY-homologous receiver domain B34_04694 SM00257 Lysin motif B34_04697 SM00052 Putative diguanylate phosphodiesterase B34_04717 SM00852 Probable molybdopterin binding domain B34_04722 SM00382 ATPases associated with a variety of cellular activities B34_04723 SM00382 ATPases associated with a variety of cellular activities B34_04726 SM00382 ATPases associated with a variety of cellular activities B34_04727 SM01066 Carbohydrate binding domain B34_04728 SM00420 helix_turn_helix, Deoxyribose operon repressor B34_04728 SM01134 B34_04728 B34_04734 SM00382 ATPases associated with a variety of cellular activities