locus-tag	class	description
D9Y32_00025	COG4608	Belongs to the ABC transporter superfamily
D9Y32_00030	COG0444	Belongs to the ABC transporter superfamily
D9Y32_00040	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D9Y32_00045	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9Y32_00060	COG1744	ABC transporter substrate-binding protein PnrA-like
D9Y32_00070	COG2267	carboxylic ester hydrolase activity
D9Y32_00085	COG1968	undecaprenyl-diphosphatase activity
D9Y32_00090	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
D9Y32_00095	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
D9Y32_00100	COG0505	Belongs to the CarA family
D9Y32_00105	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D9Y32_00110	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
D9Y32_00115	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
D9Y32_00120	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
D9Y32_00130	COG2151	metal-sulfur cluster biosynthetic enzyme
D9Y32_00135	COG1073	alpha beta
D9Y32_00140	COG0561	phosphatase activity
D9Y32_00150	COG0516	GMP reductase activity
D9Y32_00160	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9Y32_00165	COG1307	EDD domain protein, DegV family
D9Y32_00180	COG2996	Protein conserved in bacteria
D9Y32_00185	COG1666	GTP binding
D9Y32_00190	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
D9Y32_00190	COG0646	methionine synthase
D9Y32_00195	COG1410	methionine synthase
D9Y32_00195	COG0646	methionine synthase
D9Y32_00200	COG2378	regulation of single-species biofilm formation
D9Y32_00205	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_00210	COG2153	protein acetylation
D9Y32_00235	COG0076	glutamate decarboxylase activity
D9Y32_00245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9Y32_00275	COG1609	Transcriptional regulator
D9Y32_00285	COG2207	Transcriptional regulator
D9Y32_00285	COG1917	Cupin 2, conserved barrel domain protein
D9Y32_00290	COG0534	Mate efflux family protein
D9Y32_00295	COG0347	Belongs to the P(II) protein family
D9Y32_00300	COG0004	ammonium transporteR
D9Y32_00305	COG0367	asparagine synthase
D9Y32_00325	COG0179	Fumarylacetoacetate (FAA) hydrolase
D9Y32_00335	COG5337	Spore coat protein CotH
D9Y32_00380	COG0419	ATPase involved in DNA repair
D9Y32_00385	COG0420	3'-5' exonuclease activity
D9Y32_00390	COG1074	ATP-dependent DNA helicase activity
D9Y32_00395	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
D9Y32_00400	COG4149	molybdate abc transporter
D9Y32_00405	COG0725	ABC transporter, periplasmic molybdate-binding protein
D9Y32_00415	COG0745	RESPONSE REGULATOR receiver
D9Y32_00420	COG5002	protein histidine kinase activity
D9Y32_00430	COG4533	DNA binding
D9Y32_00435	COG0477	Major facilitator Superfamily
D9Y32_00435	COG2814	Major facilitator Superfamily
D9Y32_00440	COG0318	PFAM AMP-dependent synthetase and ligase
D9Y32_00445	COG3546	catalase activity
D9Y32_00460	COG3180	Ammonia monooxygenase
D9Y32_00465	COG1486	melibiose metabolic process
D9Y32_00505	COG0457	Tetratricopeptide repeat
D9Y32_00515	COG2814	Major facilitator Superfamily
D9Y32_00520	COG0549	Belongs to the carbamate kinase family
D9Y32_00530	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9Y32_00535	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9Y32_00540	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
D9Y32_00545	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
D9Y32_00550	COG3257	ureidoglycine aminohydrolase activity
D9Y32_00555	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9Y32_00570	COG1404	Belongs to the peptidase S8 family
D9Y32_00575	COG0681	Belongs to the peptidase S26 family
D9Y32_00580	COG0398	Pfam SNARE associated Golgi protein
D9Y32_00590	COG4903	ComK protein
D9Y32_00600	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_00605	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D9Y32_00605	COG0723	plastoquinol--plastocyanin reductase activity
D9Y32_00610	COG0840	transmembrane signaling receptor activity
D9Y32_00615	COG0406	alpha-ribazole phosphatase activity
D9Y32_00620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_00625	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_00630	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
D9Y32_00635	COG0697	spore germination
D9Y32_00645	COG0501	Belongs to the peptidase M48B family
D9Y32_00660	COG1396	sequence-specific DNA binding
D9Y32_00670	COG0318	PFAM AMP-dependent synthetase and ligase
D9Y32_00675	COG0095	Lipoate-protein ligase
D9Y32_00680	COG1234	tRNA 3'-trailer cleavage
D9Y32_00690	COG1301	dicarboxylic acid transport
D9Y32_00700	COG1363	Peptidase, m42
D9Y32_00705	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9Y32_00715	COG1309	transcriptional regulator
D9Y32_00730	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
D9Y32_00740	COG2329	Antibiotic biosynthesis monooxygenase
D9Y32_00745	COG3069	C4-dicarboxylate transmembrane transporter activity
D9Y32_00750	COG1473	amidohydrolase
D9Y32_00760	COG4473	ABC transporter
D9Y32_00765	COG1131	(ABC) transporter
D9Y32_00775	COG0537	adenosine 5'-monophosphoramidase activity
D9Y32_00780	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
D9Y32_00795	COG4980	gas vesicle protein
D9Y32_00800	COG1846	Transcriptional regulator
D9Y32_00830	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D9Y32_00840	COG3481	metal-dependent phosphohydrolase, HD sub domain
D9Y32_00845	COG4717	serine-type aminopeptidase activity
D9Y32_00850	COG0420	3'-5' exonuclease activity
D9Y32_00855	COG1668	transmembrane transport
D9Y32_00860	COG4152	abc transporter atp-binding protein
D9Y32_00875	COG1024	Enoyl-CoA hydratase
D9Y32_00885	COG0490	domain, Protein
D9Y32_00890	COG0475	glutathione-regulated potassium exporter activity
D9Y32_00895	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D9Y32_00900	COG0561	phosphatase activity
D9Y32_00910	COG3679	Belongs to the UPF0342 family
D9Y32_00915	COG4399	Belongs to the UPF0754 family
D9Y32_00920	COG0189	ligase activity
D9Y32_00925	COG0189	ligase activity
D9Y32_00935	COG2508	Transcriptional regulator
D9Y32_00940	COG3842	ATPase activity
D9Y32_00955	COG0702	epimerase
D9Y32_00960	COG1132	(ABC) transporter
D9Y32_00970	COG0589	response to stress
D9Y32_01015	COG2017	converts alpha-aldose to the beta-anomer
D9Y32_01020	COG1757	Na H antiporter
D9Y32_01030	COG0726	polysaccharide deacetylase
D9Y32_01040	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
D9Y32_01045	COG0668	transmembrane transport
D9Y32_01055	COG0584	glycerophosphoryl diester phosphodiesterase
D9Y32_01060	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
D9Y32_01065	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
D9Y32_01085	COG1253	flavin adenine dinucleotide binding
D9Y32_01090	COG0789	Transcriptional regulator
D9Y32_01095	COG1253	flavin adenine dinucleotide binding
D9Y32_01100	COG1309	transcriptional regulator
D9Y32_01110	COG3152	Membrane
D9Y32_01115	COG0204	Acyl-transferase
D9Y32_01125	COG0662	Cupin 2, conserved barrel domain protein
D9Y32_01130	COG1595	DNA-templated transcription, initiation
D9Y32_01155	COG3708	Transcriptional regulator
D9Y32_01155	COG2207	Transcriptional regulator
D9Y32_01165	COG0733	neurotransmitter:sodium symporter activity
D9Y32_01170	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_01175	COG2133	pyrroloquinoline quinone binding
D9Y32_01180	COG0372	Belongs to the citrate synthase family
D9Y32_01185	COG0583	DNA-binding transcription factor activity
D9Y32_01190	COG1388	LysM domain
D9Y32_01190	COG0791	NLP P60 protein
D9Y32_01195	COG2719	SpoVR family
D9Y32_01200	COG1017	nitric oxide dioxygenase activity
D9Y32_01200	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D9Y32_01205	COG1959	2 iron, 2 sulfur cluster binding
D9Y32_01220	COG0431	NADPH-dependent FMN reductase
D9Y32_01225	COG2197	response regulator
D9Y32_01230	COG2203	Gaf domain
D9Y32_01230	COG4585	Histidine kinase
D9Y32_01245	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D9Y32_01250	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D9Y32_01255	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
D9Y32_01260	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
D9Y32_01265	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
D9Y32_01270	COG0604	alcohol dehydrogenase
D9Y32_01275	COG0679	Auxin Efflux Carrier
D9Y32_01280	COG2116	formate transmembrane transporter activity
D9Y32_01290	COG0488	(ABC) transporter
D9Y32_01295	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D9Y32_01295	COG3153	acetyltransferase
D9Y32_01300	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9Y32_01305	COG0517	IMP dehydrogenase activity
D9Y32_01315	COG0564	pseudouridine synthase activity
D9Y32_01320	COG3764	Sortase (surface protein transpeptidase)
D9Y32_01325	COG0737	Belongs to the 5'-nucleotidase family
D9Y32_01325	COG1525	nuclease
D9Y32_01325	COG4085	toxin activity
D9Y32_01330	COG5002	protein histidine kinase activity
D9Y32_01335	COG5577	PFAM Coat F domain
D9Y32_01365	COG1464	Belongs to the NlpA lipoprotein family
D9Y32_01370	COG2011	ABC-type metal ion transport system permease component
D9Y32_01375	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D9Y32_01380	COG1278	Cold shock
D9Y32_01390	COG1131	(ABC) transporter
D9Y32_01395	COG1131	(ABC) transporter
D9Y32_01400	COG1131	(ABC) transporter
D9Y32_01415	COG0655	NAD(P)H dehydrogenase (quinone) activity
D9Y32_01420	COG2814	Major facilitator Superfamily
D9Y32_01425	COG1566	PFAM secretion protein HlyD family protein
D9Y32_01430	COG2718	Belongs to the UPF0229 family
D9Y32_01435	COG2766	serine protein kinase
D9Y32_01445	COG1664	Polymer-forming cytoskeletal
D9Y32_01450	COG0789	Transcriptional regulator
D9Y32_01455	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
D9Y32_01465	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
D9Y32_01470	COG3382	B3 4 domain protein
D9Y32_01480	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
D9Y32_01500	COG1131	(ABC) transporter
D9Y32_01510	COG1476	TRANSCRIPTIONal
D9Y32_01520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9Y32_01525	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D9Y32_01530	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D9Y32_01535	COG1116	anion transmembrane transporter activity
D9Y32_01540	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
D9Y32_01545	COG0710	3-dehydroquinate dehydratase activity
D9Y32_01555	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
D9Y32_01560	COG0457	Tetratricopeptide repeat
D9Y32_01625	COG0457	Tetratricopeptide repeat
D9Y32_01735	COG0735	belongs to the Fur family
D9Y32_01740	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
D9Y32_01745	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
D9Y32_01750	COG4129	membrane
D9Y32_01765	COG0747	negative chemotaxis
D9Y32_01770	COG4608	Belongs to the ABC transporter superfamily
D9Y32_01775	COG0444	Belongs to the ABC transporter superfamily
D9Y32_01780	COG1132	(ABC) transporter
D9Y32_01785	COG3557	Belongs to the UPF0374 family
D9Y32_01800	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_01810	COG1194	a g-specific adenine glycosylase
D9Y32_01815	COG1988	membrane-bound metal-dependent
D9Y32_01820	COG4485	Bacterial membrane protein, YfhO
D9Y32_01830	COG0463	Glycosyl transferase, family 2
D9Y32_01860	COG2137	regulation of response to DNA damage stimulus
D9Y32_01865	COG1090	epimerase
D9Y32_01885	COG0778	Nitroreductase
D9Y32_01890	COG0384	phenazine biosynthesis protein PhzF
D9Y32_01895	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
D9Y32_01895	COG0392	lysyltransferase activity
D9Y32_01910	COG2249	NAD(P)H dehydrogenase (quinone) activity
D9Y32_01920	COG1917	Cupin 2, conserved barrel domain protein
D9Y32_01920	COG2207	Transcriptional regulator
D9Y32_01925	COG3507	Belongs to the glycosyl hydrolase 43 family
D9Y32_01935	COG2514	catechol 2,3-dioxygenase activity
D9Y32_01940	COG2259	Doxx family
D9Y32_01945	COG1733	regulation of RNA biosynthetic process
D9Y32_01960	COG1263	PTS System
D9Y32_01960	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_01965	COG1737	Transcriptional regulator
D9Y32_01970	COG1486	melibiose metabolic process
D9Y32_01975	COG1742	UPF0060 membrane protein
D9Y32_01980	COG3284	Transcriptional regulator
D9Y32_01985	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9Y32_01990	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9Y32_01995	COG0022	dehydrogenase e1 component
D9Y32_02000	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D9Y32_02010	COG5609	conserved protein (DUF2294)
D9Y32_02015	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D9Y32_02020	COG3002	Belongs to the UPF0753 family
D9Y32_02025	COG0288	reversible hydration of carbon dioxide
D9Y32_02030	COG3711	transcriptional antiterminator
D9Y32_02035	COG1263	PTS System
D9Y32_02035	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_02040	COG0477	Major facilitator Superfamily
D9Y32_02050	COG1819	glycosyl
D9Y32_02075	COG4637	Psort location Cytoplasmic, score
D9Y32_02080	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D9Y32_02085	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
D9Y32_02090	COG0598	Magnesium transport protein CorA
D9Y32_02100	COG0371	Dehydrogenase
D9Y32_02105	COG0726	polysaccharide deacetylase
D9Y32_02115	COG0535	radical SAM domain protein
D9Y32_02125	COG0387	Pfam Sodium calcium exchanger
D9Y32_02135	COG0477	Major facilitator Superfamily
D9Y32_02140	COG1295	ribonuclease BN
D9Y32_02145	COG4980	gas vesicle protein
D9Y32_02150	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
D9Y32_02155	COG1115	amino acid carrier protein
D9Y32_02160	COG4840	Belongs to the UPF0435 family
D9Y32_02165	COG0693	protein deglycase activity
D9Y32_02175	COG0778	Nitroreductase
D9Y32_02180	COG1733	regulation of RNA biosynthetic process
D9Y32_02195	COG0673	inositol 2-dehydrogenase activity
D9Y32_02205	COG0463	Glycosyl transferase, family 2
D9Y32_02205	COG0457	Tetratricopeptide repeat
D9Y32_02210	COG1215	transferase activity, transferring glycosyl groups
D9Y32_02220	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9Y32_02225	COG1045	serine acetyltransferase
D9Y32_02230	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D9Y32_02255	COG2188	Transcriptional regulator
D9Y32_02260	COG0366	Alpha amylase catalytic
D9Y32_02265	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_02265	COG1263	PTS System
D9Y32_02280	COG1368	sulfuric ester hydrolase activity
D9Y32_02285	COG0024	Methionine aminopeptidase
D9Y32_02295	COG2258	MOSC domain
D9Y32_02300	COG1254	Belongs to the acylphosphatase family
D9Y32_02305	COG0640	Transcriptional regulator
D9Y32_02310	COG5658	integral membrane protein
D9Y32_02315	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
D9Y32_02325	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9Y32_02355	COG0471	metal ion transport
D9Y32_02370	COG2130	NADP-dependent
D9Y32_02375	COG0513	Belongs to the DEAD box helicase family
D9Y32_02380	COG0488	(ABC) transporter
D9Y32_02385	COG2814	Major facilitator Superfamily
D9Y32_02390	COG0789	Transcriptional regulator
D9Y32_02400	COG2124	cytochrome p450
D9Y32_02405	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
D9Y32_02410	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
D9Y32_02415	COG0156	8-amino-7-oxononanoate synthase activity
D9Y32_02420	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D9Y32_02425	COG1424	Catalyzes the transformation of pimelate into pimeloyl- CoA with concomitant hydrolysis of ATP to AMP
D9Y32_02430	COG0523	cobalamin synthesis protein
D9Y32_02445	COG1469	GTP cyclohydrolase I activity
D9Y32_02450	COG0488	(ABC) transporter
D9Y32_02460	COG0840	transmembrane signaling receptor activity
D9Y32_02465	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_02480	COG0217	transcriptional regulatory protein
D9Y32_02495	COG0457	Tetratricopeptide repeat
D9Y32_02545	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D9Y32_02550	COG1597	lipid kinase activity
D9Y32_02555	COG1957	nucleoside hydrolase
D9Y32_02560	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9Y32_02570	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D9Y32_02575	COG1309	transcriptional regulator
D9Y32_02580	COG4124	Belongs to the glycosyl hydrolase 26 family
D9Y32_02595	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
D9Y32_02600	COG0154	amidase activity
D9Y32_02605	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
D9Y32_02610	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9Y32_02615	COG1285	pathogenesis
D9Y32_02620	COG0363	glucosamine-6-phosphate deaminase activity
D9Y32_02625	COG3457	Alanine racemase
D9Y32_02630	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
D9Y32_02635	COG0626	cystathionine gamma-synthase activity
D9Y32_02640	COG1735	metal-dependent hydrolase with the TIM-barrel fold
D9Y32_02660	COG2188	Transcriptional regulator
D9Y32_02665	COG4851	CamS sex pheromone cAM373 precursor
D9Y32_02670	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
D9Y32_02675	COG0210	DNA helicase
D9Y32_02680	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
D9Y32_02685	COG4496	protein, YerC YecD
D9Y32_02690	COG1470	cell adhesion involved in biofilm formation
D9Y32_02695	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
D9Y32_02725	COG0151	Belongs to the GarS family
D9Y32_02730	COG0138	bifunctional purine biosynthesis protein purh
D9Y32_02735	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
D9Y32_02740	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
D9Y32_02745	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
D9Y32_02750	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
D9Y32_02755	COG0047	phosphoribosylformylglycinamidine synthase activity
D9Y32_02760	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
D9Y32_02765	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
D9Y32_02770	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
D9Y32_02775	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
D9Y32_02780	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
D9Y32_02790	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
D9Y32_02805	COG2252	PERMEase
D9Y32_02815	COG0519	Catalyzes the synthesis of GMP from XMP
D9Y32_02815	COG0518	GMP synthase (glutamine-hydrolyzing) activity
D9Y32_02820	COG1305	Transglutaminase-like
D9Y32_02825	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
D9Y32_02830	COG0714	Associated with various cellular activities
D9Y32_02835	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
D9Y32_02850	COG2132	Multicopper oxidase
D9Y32_02860	COG0702	epimerase
D9Y32_02890	COG0823	Involved in the tonB-independent uptake of proteins
D9Y32_02895	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D9Y32_02910	COG1846	Transcriptional regulator
D9Y32_02920	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D9Y32_02925	COG0366	Alpha amylase catalytic
D9Y32_02930	COG1554	hydrolase, family 65, central catalytic
D9Y32_02935	COG5521	maltodextrose utilization protein MalA
D9Y32_02940	COG3833	ABC-type maltose transport systems, permease component
D9Y32_02945	COG1175	transmembrane transport
D9Y32_02950	COG2182	Extracellular solute-binding protein
D9Y32_02955	COG0366	Alpha amylase catalytic
D9Y32_02960	COG1609	Transcriptional regulator
D9Y32_02970	COG0726	polysaccharide deacetylase
D9Y32_02995	COG0772	Belongs to the SEDS family
D9Y32_03000	COG0772	Belongs to the SEDS family
D9Y32_03005	COG3339	Conserved Protein
D9Y32_03010	COG1280	lysine exporter protein (LysE YggA)
D9Y32_03015	COG1378	Sugar-specific transcriptional regulator TrmB
D9Y32_03025	COG4260	virion core protein, lumpy skin disease virus
D9Y32_03030	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
D9Y32_03035	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D9Y32_03040	COG1842	Phage shock protein A
D9Y32_03045	COG2814	Major facilitator Superfamily
D9Y32_03050	COG2272	Belongs to the type-B carboxylesterase lipase family
D9Y32_03055	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
D9Y32_03060	COG3189	MarR family transcriptional regulator
D9Y32_03070	COG3848	Pyruvate phosphate dikinase
D9Y32_03070	COG0574	Belongs to the PEP-utilizing enzyme family
D9Y32_03075	COG1309	transcriptional regulator
D9Y32_03085	COG2135	peptidase activity
D9Y32_03100	COG2720	vancomycin resistance protein
D9Y32_03130	COG0459	protein refolding
D9Y32_03135	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
D9Y32_03140	COG1266	CAAX protease self-immunity
D9Y32_03150	COG0805	protein transport
D9Y32_03155	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9Y32_03160	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
D9Y32_03165	COG0315	cyclic pyranopterin monophosphate synthase activity
D9Y32_03170	COG0488	(ABC) transporter
D9Y32_03175	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
D9Y32_03180	COG0456	acetyltransferase
D9Y32_03185	COG1214	PFAM Peptidase M22, glycoprotease
D9Y32_03190	COG0802	atpase or kinase
D9Y32_03195	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
D9Y32_03235	COG2814	Major facilitator Superfamily
D9Y32_03240	COG3764	Sortase (surface protein transpeptidase)
D9Y32_03260	COG2814	Major facilitator Superfamily
D9Y32_03265	COG2755	lipolytic protein G-D-S-L family
D9Y32_03265	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
D9Y32_03275	COG1595	DNA-templated transcription, initiation
D9Y32_03290	COG1113	amino acid transport
D9Y32_03295	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
D9Y32_03310	COG0583	DNA-binding transcription factor activity
D9Y32_03320	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9Y32_03325	COG1733	regulation of RNA biosynthetic process
D9Y32_03335	COG2808	Putative FMN-binding domain
D9Y32_03340	COG0456	acetyltransferase
D9Y32_03345	COG1846	Transcriptional regulator
D9Y32_03350	COG2364	Membrane
D9Y32_03360	COG1063	alcohol dehydrogenase
D9Y32_03365	COG1278	Cold shock
D9Y32_03375	COG1476	TRANSCRIPTIONal
D9Y32_03420	COG3091	SprT-like family
D9Y32_03430	COG1033	growth of symbiont in host cell
D9Y32_03430	COG2409	Drug exporters of the RND superfamily
D9Y32_03435	COG1309	transcriptional regulator
D9Y32_03440	COG2183	response to ionizing radiation
D9Y32_03445	COG2208	phosphoserine phosphatase activity
D9Y32_03450	COG1191	sigma factor activity
D9Y32_03455	COG2172	sigma factor antagonist activity
D9Y32_03465	COG2208	phosphoserine phosphatase activity
D9Y32_03470	COG2172	sigma factor antagonist activity
D9Y32_03475	COG1366	Belongs to the anti-sigma-factor antagonist family
D9Y32_03480	COG1366	Belongs to the anti-sigma-factor antagonist family
D9Y32_03485	COG2337	Toxic component of a toxin-antitoxin (TA) module
D9Y32_03490	COG0864	Transcriptional regulator
D9Y32_03495	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D9Y32_03500	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
D9Y32_03505	COG0705	Rhomboid family
D9Y32_03510	COG3428	Bacterial PH domain
D9Y32_03515	COG3402	PFAM membrane-flanked domain
D9Y32_03520	COG0513	Belongs to the DEAD box helicase family
D9Y32_03530	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
D9Y32_03535	COG1181	Belongs to the D-alanine--D-alanine ligase family
D9Y32_03540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_03565	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
D9Y32_03570	COG1131	(ABC) transporter
D9Y32_03575	COG1301	dicarboxylic acid transport
D9Y32_03580	COG0628	permease
D9Y32_03590	COG0662	Cupin 2, conserved barrel domain protein
D9Y32_03600	COG2217	Heavy metal translocating P-type atpase
D9Y32_03605	COG4876	unkown
D9Y32_03610	COG1819	glycosyl
D9Y32_03615	COG1027	Aspartate ammonia-lyase
D9Y32_03620	COG2261	transglycosylase associated protein
D9Y32_03625	COG1914	H( )-stimulated, divalent metal cation uptake system
D9Y32_03630	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9Y32_03640	COG3397	chitin binding
D9Y32_03645	COG0028	Belongs to the TPP enzyme family
D9Y32_03650	COG0531	amino acid
D9Y32_03655	COG0551	DNA topoisomerase type I activity
D9Y32_03655	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D9Y32_03660	COG1522	sequence-specific DNA binding
D9Y32_03670	COG2814	Major facilitator Superfamily
D9Y32_03675	COG1316	TRANSCRIPTIONal
D9Y32_03685	COG3871	stress protein (general stress protein 26)
D9Y32_03695	COG1917	Cupin 2, conserved barrel domain protein
D9Y32_03700	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_03705	COG3711	transcriptional antiterminator
D9Y32_03710	COG0246	Mannitol dehydrogenase
D9Y32_03715	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_03720	COG2213	PTS system mannitol-specific
D9Y32_03725	COG2755	lipolytic protein G-D-S-L family
D9Y32_03730	COG1414	Transcriptional regulator
D9Y32_03735	COG1984	allophanate hydrolase subunit 2
D9Y32_03740	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
D9Y32_03745	COG4336	lyase activity
D9Y32_03750	COG1914	H( )-stimulated, divalent metal cation uptake system
D9Y32_03755	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
D9Y32_03760	COG0561	phosphatase activity
D9Y32_03765	COG3958	Transketolase
D9Y32_03770	COG3959	Transketolase, thiamine diphosphate binding domain
D9Y32_03785	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_03800	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
D9Y32_03805	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
D9Y32_03810	COG0471	metal ion transport
D9Y32_03815	COG1802	Transcriptional regulator
D9Y32_03820	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
D9Y32_03820	COG1587	Uroporphyrinogen-III synthase
D9Y32_03825	COG2146	nitrite reductase [NAD(P)H] activity
D9Y32_03830	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D9Y32_03835	COG0243	molybdopterin cofactor binding
D9Y32_03840	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D9Y32_03845	COG1349	DNA-binding transcription factor activity
D9Y32_03850	COG1276	copper resistance
D9Y32_03850	COG2372	response to copper ion
D9Y32_03855	COG4549	nuclear export factor GLE1
D9Y32_03865	COG0697	spore germination
D9Y32_03870	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_03875	COG0531	amino acid
D9Y32_03880	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D9Y32_03885	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9Y32_03890	COG0640	Transcriptional regulator
D9Y32_03895	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D9Y32_03900	COG0778	Nitroreductase
D9Y32_03910	COG1309	transcriptional regulator
D9Y32_03915	COG2814	Major facilitator Superfamily
D9Y32_03920	COG4607	ABC-type enterochelin transport system periplasmic component
D9Y32_03925	COG4604	ABC transporter, ATP-binding protein
D9Y32_03930	COG4605	iron ion homeostasis
D9Y32_03935	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_03940	COG0527	aspartate kinase activity
D9Y32_03950	COG5002	protein histidine kinase activity
D9Y32_03950	COG3850	Histidine kinase
D9Y32_03960	COG0577	efflux transmembrane transporter activity
D9Y32_03965	COG1136	(ABC) transporter
D9Y32_03970	COG0789	Transcriptional regulator
D9Y32_03975	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D9Y32_03985	COG0697	spore germination
D9Y32_03995	COG5434	Belongs to the glycosyl hydrolase 28 family
D9Y32_04000	COG3104	oligopeptide transport
D9Y32_04005	COG4247	3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)
D9Y32_04010	COG1874	Beta-galactosidase
D9Y32_04015	COG1846	Transcriptional regulator
D9Y32_04015	COG0456	acetyltransferase
D9Y32_04020	COG2271	Major facilitator Superfamily
D9Y32_04025	COG4214	carbohydrate transport
D9Y32_04035	COG4213	ABC transporter substrate-binding protein
D9Y32_04040	COG4753	response regulator
D9Y32_04040	COG2207	Transcriptional regulator
D9Y32_04045	COG2972	Histidine kinase
D9Y32_04065	COG5444	nuclease activity
D9Y32_04115	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D9Y32_04120	COG0163	prenyltransferase activity
D9Y32_04125	COG0583	DNA-binding transcription factor activity
D9Y32_04130	COG0010	Belongs to the arginase family
D9Y32_04135	COG0833	amino acid
D9Y32_04140	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D9Y32_04145	COG3829	transcription factor binding
D9Y32_04150	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9Y32_04155	COG0765	amino acid transport
D9Y32_04160	COG1126	abc transporter atp-binding protein
D9Y32_04185	COG1131	(ABC) transporter
D9Y32_04195	COG2364	Membrane
D9Y32_04205	COG2819	hydrolase of the alpha beta superfamily
D9Y32_04215	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D9Y32_04220	COG0697	spore germination
D9Y32_04225	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
D9Y32_04230	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9Y32_04235	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9Y32_04240	COG1177	transmembrane transport
D9Y32_04245	COG1176	ABC-type spermidine putrescine transport system, permease component I
D9Y32_04270	COG5444	nuclease activity
D9Y32_04280	COG3209	COG3209 Rhs family protein
D9Y32_04290	COG2723	6-phospho-beta-galactosidase activity
D9Y32_04300	COG2249	NAD(P)H dehydrogenase (quinone) activity
D9Y32_04305	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9Y32_04310	COG0765	amino acid transport
D9Y32_04330	COG3458	cephalosporin-C deacetylase activity
D9Y32_04340	COG3689	TIGRFAM TIGR03943 family protein
D9Y32_04345	COG2508	Transcriptional regulator
D9Y32_04350	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9Y32_04355	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_04360	COG0506	proline dehydrogenase activity
D9Y32_04365	COG3541	Predicted nucleotidyltransferase
D9Y32_04370	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
D9Y32_04375	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
D9Y32_04380	COG1113	amino acid transport
D9Y32_04385	COG1280	lysine exporter protein (LysE YggA)
D9Y32_04390	COG1620	l-lactate permease
D9Y32_04395	COG0039	L-malate dehydrogenase activity
D9Y32_04400	COG2223	nitrite transmembrane transporter activity
D9Y32_04405	COG0789	Transcriptional regulator
D9Y32_04415	COG0785	Cytochrome C biogenesis protein
D9Y32_04420	COG3853	Toxic anion resistance protein (TelA)
D9Y32_04440	COG0861	Integral membrane protein TerC family
D9Y32_04445	COG2310	stress, protein
D9Y32_04450	COG2310	stress, protein
D9Y32_04455	COG2310	stress, protein
D9Y32_04475	COG1309	transcriptional regulator
D9Y32_04480	COG1131	(ABC) transporter
D9Y32_04490	COG3883	PFAM NLP P60 protein
D9Y32_04490	COG0791	NLP P60 protein
D9Y32_04495	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9Y32_04500	COG3773	Cell wall hydrolase
D9Y32_04510	COG1595	DNA-templated transcription, initiation
D9Y32_04520	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_04525	COG3591	Belongs to the peptidase S1B family
D9Y32_04540	COG3394	polysaccharide catabolic process
D9Y32_04550	COG1486	melibiose metabolic process
D9Y32_04555	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_04560	COG1447	Phosphotransferase system cellobiose-specific component IIA
D9Y32_04565	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_04570	COG0277	FAD linked oxidase domain protein
D9Y32_04575	COG0247	lactate metabolic process
D9Y32_04585	COG2261	transglycosylase associated protein
D9Y32_04600	COG0456	acetyltransferase
D9Y32_04610	COG1288	antiporter activity
D9Y32_04625	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_04630	COG1942	4-Oxalocrotonate Tautomerase
D9Y32_04635	COG0583	DNA-binding transcription factor activity
D9Y32_04665	COG3012	SEC-C Motif Domain Protein
D9Y32_04665	COG1405	negative regulation of cell septum assembly
D9Y32_04670	COG1714	RDD family
D9Y32_04675	COG0697	spore germination
D9Y32_04700	COG0789	Transcriptional regulator
D9Y32_04720	COG0318	PFAM AMP-dependent synthetase and ligase
D9Y32_04725	COG1846	Transcriptional regulator
D9Y32_04730	COG3173	Aminoglycoside phosphotransferase
D9Y32_04755	COG1131	(ABC) transporter
D9Y32_04760	COG2205	protein histidine kinase activity
D9Y32_04770	COG2721	sulfolactate sulfo-lyase activity
D9Y32_04775	COG2186	Transcriptional regulator
D9Y32_04780	COG4948	Mandelate Racemase Muconate Lactonizing
D9Y32_04785	COG2271	Major facilitator Superfamily
D9Y32_04790	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_04795	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D9Y32_04800	COG0805	protein transport
D9Y32_04805	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D9Y32_04810	COG3540	Alkaline phosphatase
D9Y32_04835	COG0784	Response regulator, receiver
D9Y32_04840	COG4191	Histidine kinase
D9Y32_04845	COG2066	Belongs to the glutaminase family
D9Y32_04850	COG1115	amino acid carrier protein
D9Y32_04855	COG2205	protein histidine kinase activity
D9Y32_04870	COG2323	membrane
D9Y32_04875	COG0789	Transcriptional regulator
D9Y32_04880	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_04880	COG2190	(PTS) system
D9Y32_04880	COG1263	PTS System
D9Y32_04890	COG2040	homocysteine
D9Y32_04895	COG0833	amino acid
D9Y32_04920	COG4213	ABC transporter substrate-binding protein
D9Y32_04925	COG0840	transmembrane signaling receptor activity
D9Y32_04930	COG0371	Dehydrogenase
D9Y32_04950	COG1917	Cupin 2, conserved barrel domain protein
D9Y32_04950	COG2207	Transcriptional regulator
D9Y32_04955	COG0697	spore germination
D9Y32_04980	COG4682	membrane
D9Y32_04985	COG1283	sodium-dependent phosphate transmembrane transporter activity
D9Y32_05005	COG0477	Major facilitator Superfamily
D9Y32_05015	COG1331	Highly conserved protein containing a thioredoxin domain
D9Y32_05035	COG2211	Major facilitator Superfamily
D9Y32_05050	COG3290	protein histidine kinase activity
D9Y32_05055	COG4565	transcriptional regulatory protein
D9Y32_05060	COG3181	Tripartite tricarboxylate transporter family receptor
D9Y32_05065	COG2851	Citrate transporter
D9Y32_05070	COG1113	amino acid transport
D9Y32_05075	COG1011	Hydrolase
D9Y32_05100	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
D9Y32_05105	COG1132	(ABC) transporter
D9Y32_05115	COG2814	Major facilitator Superfamily
D9Y32_05120	COG0640	Transcriptional regulator
D9Y32_05125	COG1725	Transcriptional regulator
D9Y32_05145	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D9Y32_05150	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D9Y32_05155	COG4856	YbbR-like protein
D9Y32_05160	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
D9Y32_05165	COG5662	AntiSigma factor
D9Y32_05170	COG1595	DNA-templated transcription, initiation
D9Y32_05205	COG1683	Conserved Protein
D9Y32_05210	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
D9Y32_05215	COG1737	Transcriptional regulator
D9Y32_05220	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_05220	COG1263	PTS System
D9Y32_05225	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9Y32_05230	COG1472	Belongs to the glycosyl hydrolase 3 family
D9Y32_05235	COG3876	Protein conserved in bacteria
D9Y32_05250	COG0385	Bile acid
D9Y32_05260	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9Y32_05290	COG1396	sequence-specific DNA binding
D9Y32_05380	COG4974	Belongs to the 'phage' integrase family
D9Y32_05405	COG0726	polysaccharide deacetylase
D9Y32_05410	COG2194	sulfuric ester hydrolase activity
D9Y32_05420	COG0489	protein tyrosine kinase activity
D9Y32_05425	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9Y32_05435	COG2318	DinB family
D9Y32_05450	COG4824	toxin secretion phage lysis holin
D9Y32_05600	COG0629	single-stranded DNA binding
D9Y32_05615	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
D9Y32_05645	COG1484	DNA-dependent DNA replication
D9Y32_05680	COG3617	BRO family, N-terminal domain
D9Y32_05700	COG3620	sequence-specific DNA binding
D9Y32_05720	COG2856	Zn peptidase
D9Y32_05725	COG0582	viral genome integration into host DNA
D9Y32_05730	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
D9Y32_05735	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
D9Y32_05740	COG0101	tRNA pseudouridine synthase activity
D9Y32_05745	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
D9Y32_05750	COG1122	ATPase activity
D9Y32_05755	COG1122	ATPase activity
D9Y32_05760	COG0203	ribosomal protein L17
D9Y32_05765	COG0202	RNA polymerase activity
D9Y32_05770	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
D9Y32_05780	COG0257	Belongs to the bacterial ribosomal protein bL36 family
D9Y32_05785	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
D9Y32_05790	COG2163	COG2163 Ribosomal protein L14E L6E L27E
D9Y32_05795	COG0024	Methionine aminopeptidase
D9Y32_05800	COG0563	adenylate kinase activity
D9Y32_05805	COG0201	protein transport
D9Y32_05810	COG0200	Binds to the 23S rRNA
D9Y32_05815	COG1841	ribosomal large subunit assembly
D9Y32_05820	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
D9Y32_05825	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
D9Y32_05830	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
D9Y32_05835	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
D9Y32_05840	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
D9Y32_05845	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
D9Y32_05850	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
D9Y32_05855	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
D9Y32_05860	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
D9Y32_05865	COG0255	Belongs to the universal ribosomal protein uL29 family
D9Y32_05870	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
D9Y32_05875	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
D9Y32_05880	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
D9Y32_05885	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
D9Y32_05890	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
D9Y32_05895	COG0089	rRNA binding
D9Y32_05900	COG0088	Forms part of the polypeptide exit tunnel
D9Y32_05905	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
D9Y32_05910	COG0051	transcription antitermination factor activity, RNA binding
D9Y32_05915	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
D9Y32_05920	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D9Y32_05925	COG0049	tRNA binding
D9Y32_05930	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
D9Y32_05935	COG1358	cellular component organization or biogenesis
D9Y32_05940	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
D9Y32_05945	COG0085	RNA polymerase activity
D9Y32_05950	COG2813	Specifically methylates the guanine in position
D9Y32_05955	COG0222	ribosome binding
D9Y32_05960	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
D9Y32_05965	COG0081	regulation of translation
D9Y32_05970	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
D9Y32_05975	COG0250	Participates in transcription elongation, termination and antitermination
D9Y32_05985	COG0267	Belongs to the bacterial ribosomal protein bL33 family
D9Y32_05995	COG3688	RNA-binding protein containing a PIN domain
D9Y32_06000	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D9Y32_06005	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
D9Y32_06010	COG0215	cysteine-tRNA ligase activity
D9Y32_06015	COG1045	serine acetyltransferase
D9Y32_06020	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
D9Y32_06025	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
D9Y32_06030	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
D9Y32_06035	COG4956	integral membrane protein (PIN domain superfamily)
D9Y32_06040	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
D9Y32_06045	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
D9Y32_06050	COG0542	response to heat
D9Y32_06055	COG3869	Catalyzes the specific phosphorylation of arginine residues in
D9Y32_06060	COG3880	PFAM UvrB UvrC protein
D9Y32_06065	COG4463	regulation of RNA biosynthetic process
D9Y32_06145	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
D9Y32_06150	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D9Y32_06155	COG1396	sequence-specific DNA binding
D9Y32_06160	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D9Y32_06165	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D9Y32_06170	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
D9Y32_06175	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9Y32_06180	COG0512	Glutamine amidotransferase of anthranilate synthase
D9Y32_06185	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D9Y32_06195	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9Y32_06200	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D9Y32_06205	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
D9Y32_06210	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
D9Y32_06215	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
D9Y32_06225	COG0037	tRNA processing
D9Y32_06230	COG0515	serine threonine protein kinase
D9Y32_06235	COG2304	oxidoreductase activity
D9Y32_06240	COG2208	phosphoserine phosphatase activity
D9Y32_06255	COG1098	S1 RNA binding domain
D9Y32_06260	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
D9Y32_06275	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
D9Y32_06280	COG3956	TIGRFAM MazG family protein
D9Y32_06285	COG2244	polysaccharide biosynthetic process
D9Y32_06290	COG2002	toxin-antitoxin pair type II binding
D9Y32_06295	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
D9Y32_06305	COG0193	aminoacyl-tRNA hydrolase activity
D9Y32_06310	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
D9Y32_06315	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
D9Y32_06320	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
D9Y32_06325	COG2088	sporulation resulting in formation of a cellular spore
D9Y32_06330	COG0251	oxidation-reduction process
D9Y32_06335	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D9Y32_06340	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
D9Y32_06350	COG4466	Protein conserved in bacteria
D9Y32_06360	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
D9Y32_06365	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
D9Y32_06370	COG3583	domain protein
D9Y32_06370	COG3584	3D domain protein
D9Y32_06375	COG0084	hydrolase, TatD family'
D9Y32_06380	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9Y32_06380	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9Y32_06390	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
D9Y32_06395	COG2827	Endonuclease containing a URI domain
D9Y32_06400	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
D9Y32_06405	COG4467	Involved in initiation control of chromosome replication
D9Y32_06410	COG1774	PSP1 C-terminal conserved region
D9Y32_06415	COG0470	DNA polymerase III
D9Y32_06420	COG1728	Protein conserved in bacteria
D9Y32_06425	COG3870	Protein conserved in bacteria
D9Y32_06430	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
D9Y32_06435	COG1982	Orn Lys Arg decarboxylase major
D9Y32_06440	COG3853	Toxic anion resistance protein (TelA)
D9Y32_06445	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
D9Y32_06490	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
D9Y32_06495	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
D9Y32_06500	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
D9Y32_06510	COG0590	tRNA wobble adenosine to inosine editing
D9Y32_06515	COG1335	isochorismatase
D9Y32_06520	COG3858	chitin binding
D9Y32_06520	COG1388	LysM domain
D9Y32_06525	COG1428	Deoxynucleoside kinase
D9Y32_06530	COG1428	Deoxynucleoside kinase
D9Y32_06550	COG2610	gluconate transmembrane transporter activity
D9Y32_06555	COG1929	Belongs to the glycerate kinase type-1 family
D9Y32_06560	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
D9Y32_06565	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
D9Y32_06570	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
D9Y32_06575	COG1686	Belongs to the peptidase S11 family
D9Y32_06580	COG0516	GMP reductase activity
D9Y32_06580	COG0517	IMP dehydrogenase activity
D9Y32_06615	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D9Y32_06620	COG0187	DNA topoisomerase II activity
D9Y32_06630	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
D9Y32_06635	COG2501	S4 domain
D9Y32_06640	COG0592	DNA-directed DNA polymerase activity
D9Y32_06645	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
D9Y32_06650	COG0230	Belongs to the bacterial ribosomal protein bL34 family
D9Y32_06655	COG0594	ribonuclease P activity
D9Y32_06660	COG0706	membrane insertase activity
D9Y32_06665	COG1847	R3H domain protein
D9Y32_06670	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
D9Y32_06675	COG0445	tRNA wobble uridine modification
D9Y32_06680	COG0357	Ribosomal RNA small subunit methyltransferase G
D9Y32_06685	COG1475	DNA binding
D9Y32_06695	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D9Y32_06700	COG1192	Involved in chromosome partitioning
D9Y32_06705	COG1475	DNA binding
D9Y32_06715	COG3949	Membrane
D9Y32_06720	COG4481	Protein conserved in bacteria
D9Y32_06730	COG0012	GTP binding
D9Y32_06735	COG0360	Binds together with S18 to 16S ribosomal RNA
D9Y32_06740	COG0629	single-stranded DNA binding
D9Y32_06745	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
D9Y32_06750	COG2271	Major facilitator Superfamily
D9Y32_06755	COG0659	secondary active sulfate transmembrane transporter activity
D9Y32_06760	COG0589	response to stress
D9Y32_06765	COG5577	PFAM Coat F domain
D9Y32_06770	COG4241	membrane
D9Y32_06775	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
D9Y32_06785	COG1263	PTS System
D9Y32_06785	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_06790	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
D9Y32_06800	COG0363	glucosamine-6-phosphate deaminase activity
D9Y32_06805	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D9Y32_06810	COG2807	transmembrane transport
D9Y32_06815	COG3093	addiction module antidote protein HigA
D9Y32_06830	COG0305	Participates in initiation and elongation during chromosome replication
D9Y32_06840	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
D9Y32_06845	COG1051	belongs to the nudix hydrolase family
D9Y32_06870	COG0745	RESPONSE REGULATOR receiver
D9Y32_06875	COG5002	protein histidine kinase activity
D9Y32_06880	COG4863	YycH protein
D9Y32_06885	COG4853	Protein conserved in bacteria
D9Y32_06895	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9Y32_06910	COG0456	acetyltransferase
D9Y32_06925	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
D9Y32_06950	COG2197	response regulator
D9Y32_06955	COG4585	Histidine kinase
D9Y32_06960	COG0842	Transport permease protein
D9Y32_06965	COG1131	(ABC) transporter
D9Y32_06990	COG3634	alkyl hydroperoxide reductase activity
D9Y32_06995	COG0450	alkyl hydroperoxide reductase
D9Y32_07000	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_07000	COG1454	alcohol dehydrogenase
D9Y32_07025	COG1940	carbohydrate kinase activity
D9Y32_07030	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
D9Y32_07035	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D9Y32_07045	COG1609	Transcriptional regulator
D9Y32_07050	COG2182	Extracellular solute-binding protein
D9Y32_07055	COG1175	transmembrane transport
D9Y32_07060	COG3833	ABC-type maltose transport systems, permease component
D9Y32_07065	COG1874	Beta-galactosidase
D9Y32_07070	COG3867	Arabinogalactan endo-beta-1,4-galactanase
D9Y32_07075	COG0686	Belongs to the AlaDH PNT family
D9Y32_07080	COG1115	amino acid carrier protein
D9Y32_07095	COG0745	RESPONSE REGULATOR receiver
D9Y32_07100	COG2205	protein histidine kinase activity
D9Y32_07105	COG1136	(ABC) transporter
D9Y32_07110	COG0577	efflux transmembrane transporter activity
D9Y32_07115	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
D9Y32_07145	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_07165	COG0561	phosphatase activity
D9Y32_07170	COG0488	(ABC) transporter
D9Y32_07175	COG0326	Molecular chaperone. Has ATPase activity
D9Y32_07180	COG2271	Major facilitator Superfamily
D9Y32_07185	COG0584	glycerophosphoryl diester phosphodiesterase
D9Y32_07190	COG0667	Aldo Keto reductase
D9Y32_07195	COG1349	DNA-binding transcription factor activity
D9Y32_07205	COG3718	enzyme involved in inositol metabolism
D9Y32_07210	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9Y32_07215	COG3962	Belongs to the TPP enzyme family
D9Y32_07220	COG1082	Xylose isomerase domain protein TIM barrel
D9Y32_07225	COG2814	Major facilitator Superfamily
D9Y32_07230	COG0673	inositol 2-dehydrogenase activity
D9Y32_07235	COG1082	Xylose isomerase domain protein TIM barrel
D9Y32_07240	COG1082	Xylose isomerase domain protein TIM barrel
D9Y32_07245	COG0191	fructose-bisphosphate aldolase activity
D9Y32_07255	COG1181	Belongs to the D-alanine--D-alanine ligase family
D9Y32_07270	COG3977	Valine--pyruvate aminotransferase
D9Y32_07280	COG1215	transferase activity, transferring glycosyl groups
D9Y32_07295	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
D9Y32_07305	COG2390	Transcriptional regulator
D9Y32_07310	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
D9Y32_07315	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9Y32_07320	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
D9Y32_07350	COG0513	Belongs to the DEAD box helicase family
D9Y32_07355	COG3507	Belongs to the glycosyl hydrolase 43 family
D9Y32_07370	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
D9Y32_07380	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_07380	COG2190	(PTS) system
D9Y32_07380	COG1263	PTS System
D9Y32_07385	COG2723	6-phospho-beta-galactosidase activity
D9Y32_07390	COG0745	RESPONSE REGULATOR receiver
D9Y32_07395	COG2205	protein histidine kinase activity
D9Y32_07400	COG1136	(ABC) transporter
D9Y32_07405	COG0577	efflux transmembrane transporter activity
D9Y32_07410	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
D9Y32_07420	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
D9Y32_07425	COG2224	Isocitrate lyase
D9Y32_07435	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
D9Y32_07440	COG4721	ABC-type cobalt transport system, permease component
D9Y32_07445	COG1122	ATPase activity
D9Y32_07450	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
D9Y32_07460	COG2190	(PTS) system
D9Y32_07460	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_07460	COG1263	PTS System
D9Y32_07465	COG2723	6-phospho-beta-galactosidase activity
D9Y32_07480	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9Y32_07510	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D9Y32_07515	COG0463	Glycosyl transferase, family 2
D9Y32_07520	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
D9Y32_07525	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D9Y32_07550	COG1175	transmembrane transport
D9Y32_07555	COG0395	ABC-type sugar transport system, permease component
D9Y32_07560	COG2223	nitrite transmembrane transporter activity
D9Y32_07565	COG1621	beta-fructofuranosidase activity
D9Y32_07575	COG2195	Cleaves the N-terminal amino acid of tripeptides
D9Y32_07585	COG1595	DNA-templated transcription, initiation
D9Y32_07595	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_07600	COG2723	6-phospho-beta-galactosidase activity
D9Y32_07610	COG0549	Belongs to the carbamate kinase family
D9Y32_07620	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
D9Y32_07625	COG2235	arginine
D9Y32_07645	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9Y32_07655	COG1368	sulfuric ester hydrolase activity
D9Y32_07670	COG0584	glycerophosphoryl diester phosphodiesterase
D9Y32_07675	COG3493	citrate carrier protein
D9Y32_07705	COG5294	Protein conserved in bacteria
D9Y32_07715	COG1136	(ABC) transporter
D9Y32_07725	COG2205	protein histidine kinase activity
D9Y32_07730	COG0745	RESPONSE REGULATOR receiver
D9Y32_07735	COG2706	6-phosphogluconolactonase activity
D9Y32_07740	COG1396	sequence-specific DNA binding
D9Y32_07745	COG0252	asparaginase activity
D9Y32_07750	COG1027	Aspartate ammonia-lyase
D9Y32_07755	COG1757	Na H antiporter
D9Y32_07760	COG0281	malic enzyme
D9Y32_07770	COG2116	formate transmembrane transporter activity
D9Y32_07780	COG1271	oxidase subunit
D9Y32_07785	COG1294	oxidase, subunit
D9Y32_07790	COG4988	ABC transporter
D9Y32_07795	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
D9Y32_07800	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
D9Y32_07805	COG3866	Pectate lyase
D9Y32_07855	COG1131	(ABC) transporter
D9Y32_07870	COG1131	(ABC) transporter
D9Y32_07875	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
D9Y32_07885	COG0735	belongs to the Fur family
D9Y32_07890	COG0753	catalase activity
D9Y32_07895	COG0753	catalase activity
D9Y32_07900	COG2814	Major facilitator Superfamily
D9Y32_07905	COG1595	DNA-templated transcription, initiation
D9Y32_07925	COG1131	(ABC) transporter
D9Y32_07930	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
D9Y32_07950	COG2755	lipolytic protein G-D-S-L family
D9Y32_07955	COG1132	(ABC) transporter
D9Y32_07970	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
D9Y32_07975	COG2079	MmgE PrpD family protein
D9Y32_07980	COG0372	Belongs to the citrate synthase family
D9Y32_07990	COG2094	Belongs to the DNA glycosylase MPG family
D9Y32_07995	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_07995	COG3711	transcriptional antiterminator
D9Y32_08000	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_08005	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_08010	COG1447	Phosphotransferase system cellobiose-specific component IIA
D9Y32_08015	COG1486	melibiose metabolic process
D9Y32_08020	COG2814	Major facilitator Superfamily
D9Y32_08025	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9Y32_08030	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
D9Y32_08035	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
D9Y32_08040	COG1696	Membrane protein involved in D-alanine export
D9Y32_08045	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9Y32_08060	COG2357	RelA SpoT domain protein
D9Y32_08070	COG0477	Major facilitator Superfamily
D9Y32_08075	COG2234	aminopeptidase activity
D9Y32_08085	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9Y32_08095	COG2197	response regulator
D9Y32_08110	COG1442	glycosyl transferase family 8
D9Y32_08115	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D9Y32_08120	COG0346	lactoylglutathione lyase activity
D9Y32_08125	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
D9Y32_08130	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9Y32_08140	COG1346	cytolysis
D9Y32_08145	COG1380	Effector of murein hydrolase LrgA
D9Y32_08160	COG0583	DNA-binding transcription factor activity
D9Y32_08165	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
D9Y32_08170	COG0352	thiamine-phosphate diphosphorylase activity
D9Y32_08180	COG2115	Belongs to the xylose isomerase family
D9Y32_08185	COG1070	Carbohydrate kinase
D9Y32_08190	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9Y32_08195	COG3162	membrane
D9Y32_08220	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D9Y32_08225	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D9Y32_08230	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D9Y32_08240	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D9Y32_08275	COG0456	acetyltransferase
D9Y32_08300	COG0772	Belongs to the SEDS family
D9Y32_08305	COG0772	Belongs to the SEDS family
D9Y32_08310	COG1473	amidohydrolase
D9Y32_08315	COG0778	Nitroreductase
D9Y32_08320	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9Y32_08340	COG3711	transcriptional antiterminator
D9Y32_08345	COG1263	PTS System
D9Y32_08345	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_08350	COG1621	beta-fructofuranosidase activity
D9Y32_08360	COG0351	phosphomethylpyrimidine kinase
D9Y32_08365	COG1216	Glycosyl transferase, family 2
D9Y32_08370	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
D9Y32_08375	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_08385	COG2233	PERMEase
D9Y32_08390	COG2363	Small membrane protein
D9Y32_08405	COG1131	(ABC) transporter
D9Y32_08425	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D9Y32_08445	COG0280	phosphate acetyltransferase
D9Y32_08455	COG1414	Transcriptional regulator
D9Y32_08490	COG4844	belongs to the
D9Y32_08495	COG1078	dGTPase activity
D9Y32_08500	COG3465	dGTPase activity
D9Y32_08510	COG1942	4-Oxalocrotonate Tautomerase
D9Y32_08515	COG1994	Peptidase M50
D9Y32_08525	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D9Y32_08540	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
D9Y32_08545	COG0010	Belongs to the arginase family
D9Y32_08550	COG4506	Protein conserved in bacteria
D9Y32_08555	COG0018	arginyl-trna synthetase
D9Y32_08565	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9Y32_08570	COG0247	lactate metabolic process
D9Y32_08570	COG2181	nitrate reductase activity
D9Y32_08575	COG0183	Belongs to the thiolase family
D9Y32_08580	COG1250	3-hydroxyacyl-CoA dehydrogenase
D9Y32_08585	COG1960	acyl-CoA dehydrogenase activity
D9Y32_08590	COG1960	acyl-CoA dehydrogenase activity
D9Y32_08595	COG3343	RNA polymerase activity
D9Y32_08600	COG0504	CTP synthase activity
D9Y32_08605	COG4821	SIS domain
D9Y32_08610	COG2204	response regulator
D9Y32_08615	COG0191	fructose-bisphosphate aldolase activity
D9Y32_08620	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D9Y32_08625	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
D9Y32_08630	COG1494	fructose-1,6-bisphosphatase
D9Y32_08635	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
D9Y32_08640	COG0254	rRNA binding
D9Y32_08645	COG1435	thymidine kinase activity
D9Y32_08650	COG0281	malic enzyme
D9Y32_08655	COG0679	Auxin Efflux Carrier
D9Y32_08660	COG0789	Transcriptional regulator
D9Y32_08665	COG0346	lactoylglutathione lyase activity
D9Y32_08670	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
D9Y32_08675	COG2890	protein-(glutamine-N5) methyltransferase activity
D9Y32_08680	COG1609	Transcriptional regulator
D9Y32_08690	COG0561	phosphatase activity
D9Y32_08695	COG0673	inositol 2-dehydrogenase activity
D9Y32_08700	COG0738	Major facilitator superfamily
D9Y32_08710	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
D9Y32_08715	COG0009	L-threonylcarbamoyladenylate synthase
D9Y32_08720	COG1971	Probably functions as a manganese efflux pump
D9Y32_08725	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
D9Y32_08730	COG0698	ribose 5-phosphate isomerase
D9Y32_08735	COG4475	Protein of unknown function (DUF436)
D9Y32_08740	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
D9Y32_08745	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
D9Y32_08765	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
D9Y32_08770	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
D9Y32_08775	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
D9Y32_08780	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
D9Y32_08785	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
D9Y32_08790	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
D9Y32_08795	COG0355	proton-transporting ATP synthase activity, rotational mechanism
D9Y32_08800	COG4836	Membrane
D9Y32_08815	COG2385	sporulation resulting in formation of a cellular spore
D9Y32_08820	COG2304	oxidoreductase activity
D9Y32_08825	COG2304	oxidoreductase activity
D9Y32_08830	COG3383	formate dehydrogenase (NAD+) activity
D9Y32_08840	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
D9Y32_08845	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
D9Y32_08850	COG1994	Peptidase M50
D9Y32_08860	COG1959	2 iron, 2 sulfur cluster binding
D9Y32_08865	COG2910	NAD(P)H-binding
D9Y32_08875	COG2207	Transcriptional regulator
D9Y32_08875	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_08880	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_08885	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_08890	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_08895	COG2819	hydrolase of the alpha beta superfamily
D9Y32_08900	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_08905	COG1169	isochorismate synthase
D9Y32_08910	COG1021	2,3-dihydroxybenzoate-AMP ligase
D9Y32_08915	COG1535	isochorismatase
D9Y32_08915	COG3433	isochorismatase activity
D9Y32_08920	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D9Y32_08925	COG3251	PFAM MbtH domain protein
D9Y32_08930	COG0477	Major facilitator Superfamily
D9Y32_08935	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9Y32_08945	COG1247	-acetyltransferase
D9Y32_08950	COG0739	heme binding
D9Y32_08960	COG0740	serine-type endopeptidase activity
D9Y32_08965	COG0347	Belongs to the P(II) protein family
D9Y32_08970	COG0004	ammonium transporteR
D9Y32_08975	COG1253	flavin adenine dinucleotide binding
D9Y32_08980	COG0598	Magnesium transport protein CorA
D9Y32_08985	COG0517	IMP dehydrogenase activity
D9Y32_08990	COG3361	conserved protein (COG2071)
D9Y32_09000	COG1227	inorganic diphosphatase activity
D9Y32_09005	COG0671	phosphoesterase, PA-phosphatase related
D9Y32_09015	COG1846	Transcriptional regulator
D9Y32_09025	COG1609	Transcriptional regulator
D9Y32_09030	COG1077	Cell shape determining protein MreB Mrl
D9Y32_09035	COG4786	Flagellar basal body rod
D9Y32_09040	COG4786	Flagellar basal body rod
D9Y32_09045	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
D9Y32_09050	COG1970	mechanosensitive ion channel activity
D9Y32_09065	COG0629	single-stranded DNA binding
D9Y32_09085	COG3732	PTS system glucitol sorbitol-specific
D9Y32_09095	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_09105	COG1349	DNA-binding transcription factor activity
D9Y32_09110	COG0561	phosphatase activity
D9Y32_09115	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
D9Y32_09120	COG4715	Zinc finger, swim domain protein
D9Y32_09135	COG4464	protein tyrosine phosphatase activity
D9Y32_09140	COG2059	Chromate
D9Y32_09145	COG2059	Chromate
D9Y32_09150	COG1522	sequence-specific DNA binding
D9Y32_09155	COG0405	Gamma-glutamyltransferase
D9Y32_09160	COG0583	DNA-binding transcription factor activity
D9Y32_09165	COG0028	Belongs to the TPP enzyme family
D9Y32_09170	COG3527	Alpha-acetolactate decarboxylase
D9Y32_09180	COG1879	ABC-type sugar transport system periplasmic component
D9Y32_09185	COG1172	Belongs to the binding-protein-dependent transport system permease family
D9Y32_09190	COG1129	ABC transporter
D9Y32_09195	COG1869	D-ribose catabolic process
D9Y32_09200	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9Y32_09205	COG1609	Transcriptional regulator
D9Y32_09210	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
D9Y32_09220	COG2843	Capsule synthesis protein
D9Y32_09225	COG0791	NLP P60 protein
D9Y32_09230	COG0561	phosphatase activity
D9Y32_09235	COG1316	TRANSCRIPTIONal
D9Y32_09240	COG2814	Major facilitator Superfamily
D9Y32_09245	COG1063	alcohol dehydrogenase
D9Y32_09250	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_09255	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
D9Y32_09260	COG1609	Transcriptional regulator
D9Y32_09265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D9Y32_09270	COG0800	Aldolase
D9Y32_09290	COG1482	cell wall glycoprotein biosynthetic process
D9Y32_09295	COG4193	domain, Protein
D9Y32_09300	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
D9Y32_09305	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
D9Y32_09310	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
D9Y32_09315	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
D9Y32_09320	COG0463	Glycosyl transferase, family 2
D9Y32_09320	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
D9Y32_09325	COG1682	transport, permease protein
D9Y32_09330	COG1134	teichoic acid transport
D9Y32_09335	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D9Y32_09340	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
D9Y32_09345	COG1316	TRANSCRIPTIONal
D9Y32_09355	COG2247	cell wall binding repeat
D9Y32_09355	COG2385	sporulation resulting in formation of a cellular spore
D9Y32_09360	COG2247	cell wall binding repeat
D9Y32_09360	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9Y32_09370	COG2244	polysaccharide biosynthetic process
D9Y32_09375	COG0438	transferase activity, transferring glycosyl groups
D9Y32_09375	COG0297	glycogen (starch) synthase activity
D9Y32_09380	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
D9Y32_09385	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9Y32_09390	COG3307	-O-antigen
D9Y32_09395	COG3206	protein involved in exopolysaccharide biosynthesis
D9Y32_09400	COG1215	transferase activity, transferring glycosyl groups
D9Y32_09405	COG0438	transferase activity, transferring glycosyl groups
D9Y32_09410	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
D9Y32_09420	COG1316	TRANSCRIPTIONal
D9Y32_09425	COG1739	Uncharacterized protein family UPF0029
D9Y32_09430	COG4585	Histidine kinase
D9Y32_09435	COG2197	response regulator
D9Y32_09440	COG1307	EDD domain protein, DegV family
D9Y32_09445	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
D9Y32_09455	COG1040	competence protein
D9Y32_09465	COG2747	anti-sigma28 factor FlgM
D9Y32_09470	COG3418	PFAM FlgN family protein
D9Y32_09475	COG1256	bacterial-type flagellum assembly
D9Y32_09475	COG4786	Flagellar basal body rod
D9Y32_09480	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9Y32_09490	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
D9Y32_09495	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
D9Y32_09500	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D9Y32_09505	COG1334	flagellar protein FlaG
D9Y32_09510	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
D9Y32_09515	COG1516	flagellar protein fliS
D9Y32_09530	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D9Y32_09535	COG0653	protein targeting
D9Y32_09545	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9Y32_09550	COG2010	Cytochrome c
D9Y32_09560	COG2884	Cell division ATP-binding protein ftsE
D9Y32_09565	COG2177	Part of the ABC transporter FtsEX involved in
D9Y32_09570	COG3883	PFAM NLP P60 protein
D9Y32_09570	COG0791	NLP P60 protein
D9Y32_09575	COG0473	3-isopropylmalate dehydrogenase activity
D9Y32_09580	COG3409	Peptidoglycan-binding domain 1 protein
D9Y32_09580	COG0793	Belongs to the peptidase S41A family
D9Y32_09590	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9Y32_09600	COG4897	Protein conserved in bacteria
D9Y32_09605	COG0556	nucleotide-excision repair
D9Y32_09610	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
D9Y32_09635	COG3595	metallopeptidase activity
D9Y32_09640	COG1983	PspC domain protein
D9Y32_09645	COG1950	PFAM Membrane protein of
D9Y32_09650	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D9Y32_09655	COG2814	Major facilitator Superfamily
D9Y32_09660	COG1846	Transcriptional regulator
D9Y32_09665	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
D9Y32_09670	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
D9Y32_09675	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
D9Y32_09680	COG0546	phosphoglycolate phosphatase activity
D9Y32_09685	COG0110	maltose O-acetyltransferase activity
D9Y32_09690	COG5297	Belongs to the glycosyl hydrolase family 6
D9Y32_09695	COG4990	cell redox homeostasis
D9Y32_09700	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
D9Y32_09705	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
D9Y32_09710	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
D9Y32_09715	COG0131	Imidazoleglycerol-phosphate dehydratase
D9Y32_09720	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
D9Y32_09725	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
D9Y32_09730	COG0107	imidazoleglycerol-phosphate synthase activity
D9Y32_09735	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
D9Y32_09735	COG0140	phosphoribosyl-ATP diphosphatase activity
D9Y32_09745	COG0457	Tetratricopeptide repeat
D9Y32_09750	COG0492	ferredoxin-NADP+ reductase activity
D9Y32_09760	COG1051	belongs to the nudix hydrolase family
D9Y32_09765	COG1660	Displays ATPase and GTPase activities
D9Y32_09770	COG0391	Required for morphogenesis under gluconeogenic growth conditions
D9Y32_09775	COG1481	regulation of sporulation
D9Y32_09780	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_09785	COG2162	N-hydroxyarylamine O-acetyltransferase activity
D9Y32_09790	COG2732	(Barnase) inhibitor
D9Y32_09800	COG0640	Transcriptional regulator
D9Y32_09805	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D9Y32_09810	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D9Y32_09815	COG0288	reversible hydration of carbon dioxide
D9Y32_09820	COG0659	secondary active sulfate transmembrane transporter activity
D9Y32_09825	COG1078	dGTPase activity
D9Y32_09830	COG1694	Mazg nucleotide pyrophosphohydrolase
D9Y32_09835	COG1611	Belongs to the LOG family
D9Y32_09840	COG0740	serine-type endopeptidase activity
D9Y32_09855	COG4974	Belongs to the 'phage' integrase family
D9Y32_09870	COG0582	viral genome integration into host DNA
D9Y32_09985	COG1621	beta-fructofuranosidase activity
D9Y32_09990	COG1621	beta-fructofuranosidase activity
D9Y32_09995	COG1902	pentaerythritol trinitrate reductase activity
D9Y32_10000	COG1733	regulation of RNA biosynthetic process
D9Y32_10010	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D9Y32_10025	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
D9Y32_10035	COG2271	Major facilitator Superfamily
D9Y32_10040	COG2249	NAD(P)H dehydrogenase (quinone) activity
D9Y32_10045	COG1396	sequence-specific DNA binding
D9Y32_10050	COG3944	biosynthesis protein
D9Y32_10055	COG0489	protein tyrosine kinase activity
D9Y32_10060	COG1086	Polysaccharide biosynthesis protein
D9Y32_10065	COG0438	transferase activity, transferring glycosyl groups
D9Y32_10070	COG1215	transferase activity, transferring glycosyl groups
D9Y32_10075	COG0438	transferase activity, transferring glycosyl groups
D9Y32_10085	COG1216	Glycosyl transferase, family 2
D9Y32_10090	COG5039	Polysaccharide pyruvyl transferase
D9Y32_10095	COG1216	Glycosyl transferase, family 2
D9Y32_10100	COG2244	polysaccharide biosynthetic process
D9Y32_10105	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
D9Y32_10110	COG0110	maltose O-acetyltransferase activity
D9Y32_10115	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D9Y32_10120	COG5039	Polysaccharide pyruvyl transferase
D9Y32_10130	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
D9Y32_10135	COG1620	l-lactate permease
D9Y32_10140	COG2186	Transcriptional regulator
D9Y32_10145	COG0247	lactate metabolic process
D9Y32_10150	COG1139	Iron-sulfur cluster binding protein
D9Y32_10155	COG1556	Lactate utilization protein
D9Y32_10175	COG1113	amino acid transport
D9Y32_10180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D9Y32_10185	COG2390	Transcriptional regulator
D9Y32_10190	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D9Y32_10200	COG0126	phosphoglycerate kinase activity
D9Y32_10205	COG0149	triose-phosphate isomerase activity
D9Y32_10210	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
D9Y32_10215	COG0148	phosphopyruvate hydratase activity
D9Y32_10220	COG0693	protein deglycase activity
D9Y32_10235	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_10245	COG3064	Membrane
D9Y32_10250	COG2095	MarC family integral membrane protein
D9Y32_10255	COG1510	regulation of RNA biosynthetic process
D9Y32_10260	COG1125	glycine betaine transport
D9Y32_10260	COG0517	IMP dehydrogenase activity
D9Y32_10265	COG1174	glycine betaine transport
D9Y32_10270	COG1732	Glycine betaine
D9Y32_10275	COG1174	glycine betaine transport
D9Y32_10280	COG1396	sequence-specific DNA binding
D9Y32_10285	COG1396	sequence-specific DNA binding
D9Y32_10290	COG1476	TRANSCRIPTIONal
D9Y32_10295	COG2002	toxin-antitoxin pair type II binding
D9Y32_10300	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D9Y32_10305	COG1647	Serine aminopeptidase, S33
D9Y32_10310	COG0557	exoribonuclease II activity
D9Y32_10315	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
D9Y32_10385	COG2140	Oxalate decarboxylase
D9Y32_10395	COG1191	sigma factor activity
D9Y32_10410	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
D9Y32_10415	COG0673	inositol 2-dehydrogenase activity
D9Y32_10425	COG1846	Transcriptional regulator
D9Y32_10435	COG2124	cytochrome p450
D9Y32_10445	COG2814	Major facilitator Superfamily
D9Y32_10450	COG2814	Major facilitator Superfamily
D9Y32_10455	COG3347	Dehydrogenase
D9Y32_10455	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_10465	COG4952	isomerase
D9Y32_10470	COG1070	Carbohydrate kinase
D9Y32_10475	COG1349	DNA-binding transcription factor activity
D9Y32_10480	COG0693	protein deglycase activity
D9Y32_10485	COG1937	Protein conserved in bacteria
D9Y32_10490	COG2608	mercury ion transmembrane transporter activity
D9Y32_10495	COG2217	Heavy metal translocating P-type atpase
D9Y32_10510	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_10510	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9Y32_10510	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9Y32_10530	COG0803	Belongs to the bacterial solute-binding protein 9 family
D9Y32_10535	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9Y32_10540	COG1121	(ABC) transporter
D9Y32_10550	COG1501	Belongs to the glycosyl hydrolase 31 family
D9Y32_10555	COG0395	ABC-type sugar transport system, permease component
D9Y32_10560	COG1175	transmembrane transport
D9Y32_10565	COG1653	transport
D9Y32_10570	COG2217	Heavy metal translocating P-type atpase
D9Y32_10575	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D9Y32_10580	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
D9Y32_10585	COG0456	acetyltransferase
D9Y32_10590	COG0456	acetyltransferase
D9Y32_10590	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
D9Y32_10595	COG2860	membrane
D9Y32_10600	COG3973	AAA domain
D9Y32_10610	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D9Y32_10615	COG1940	carbohydrate kinase activity
D9Y32_10620	COG0656	L-ascorbic acid biosynthetic process
D9Y32_10625	COG2814	Major facilitator Superfamily
D9Y32_10630	COG1368	sulfuric ester hydrolase activity
D9Y32_10635	COG1988	membrane-bound metal-dependent
D9Y32_10645	COG0531	amino acid
D9Y32_10650	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_10655	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_10660	COG1120	ATPase activity
D9Y32_10665	COG0745	RESPONSE REGULATOR receiver
D9Y32_10670	COG2205	protein histidine kinase activity
D9Y32_10675	COG1904	glucuronate isomerase
D9Y32_10680	COG2211	Major facilitator Superfamily
D9Y32_10685	COG1609	Transcriptional regulator
D9Y32_10690	COG0246	Mannitol dehydrogenase
D9Y32_10695	COG2721	sulfolactate sulfo-lyase activity
D9Y32_10710	COG2258	MOSC domain
D9Y32_10715	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_10720	COG1802	Transcriptional regulator
D9Y32_10725	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_10730	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_10735	COG1120	ATPase activity
D9Y32_10740	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D9Y32_10745	COG1454	alcohol dehydrogenase
D9Y32_10760	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_10765	COG2096	Adenosyltransferase
D9Y32_10770	COG4677	pectinesterase activity
D9Y32_10775	COG4758	membrane
D9Y32_10780	COG1842	Phage shock protein A
D9Y32_10790	COG4758	membrane
D9Y32_10795	COG4585	Histidine kinase
D9Y32_10800	COG2197	response regulator
D9Y32_10815	COG0814	amino acid
D9Y32_10820	COG0697	spore germination
D9Y32_10830	COG0114	fumarate hydratase activity
D9Y32_10835	COG1309	transcriptional regulator
D9Y32_10840	COG2205	protein histidine kinase activity
D9Y32_10840	COG2770	Histidine kinase
D9Y32_10845	COG0745	RESPONSE REGULATOR receiver
D9Y32_10850	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9Y32_10855	COG0783	Belongs to the Dps family
D9Y32_10860	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_10865	COG1686	Belongs to the peptidase S11 family
D9Y32_10880	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_10885	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_10890	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D9Y32_10895	COG1120	ATPase activity
D9Y32_10910	COG5577	PFAM Coat F domain
D9Y32_10925	COG1250	3-hydroxyacyl-CoA dehydrogenase
D9Y32_10925	COG1024	Enoyl-CoA hydratase
D9Y32_10930	COG0183	Belongs to the thiolase family
D9Y32_10935	COG1960	acyl-CoA dehydrogenase activity
D9Y32_10940	COG1393	Belongs to the ArsC family
D9Y32_10945	COG0509	glycine decarboxylation via glycine cleavage system
D9Y32_10955	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
D9Y32_10960	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_10970	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D9Y32_10975	COG2011	ABC-type metal ion transport system permease component
D9Y32_10980	COG1464	Belongs to the NlpA lipoprotein family
D9Y32_10985	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D9Y32_10995	COG0396	ATPase activity
D9Y32_11000	COG0719	Fe-S assembly protein
D9Y32_11005	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D9Y32_11010	COG0822	iron-sulfur transferase activity
D9Y32_11015	COG0719	Fe-S assembly protein
D9Y32_11020	COG0457	Tetratricopeptide repeat
D9Y32_11035	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D9Y32_11045	COG2356	endonuclease I
D9Y32_11055	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D9Y32_11065	COG2814	Major facilitator Superfamily
D9Y32_11070	COG2508	Transcriptional regulator
D9Y32_11075	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9Y32_11080	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
D9Y32_11090	COG3226	Transcriptional regulator
D9Y32_11100	COG1801	Protein of unknown function DUF72
D9Y32_11105	COG0730	response to heat
D9Y32_11110	COG0737	Belongs to the 5'-nucleotidase family
D9Y32_11115	COG3377	Domain of unknown function (DUF1805)
D9Y32_11125	COG0733	neurotransmitter:sodium symporter activity
D9Y32_11135	COG0739	heme binding
D9Y32_11150	COG4470	Protein conserved in bacteria
D9Y32_11155	COG2445	Protein of unknown function DUF86
D9Y32_11160	COG0647	UMP catabolic process
D9Y32_11165	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D9Y32_11170	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9Y32_11180	COG0460	homoserine dehydrogenase
D9Y32_11185	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
D9Y32_11190	COG0083	homoserine kinase activity
D9Y32_11195	COG1506	peptidase
D9Y32_11195	COG4946	Tricorn protease homolog
D9Y32_11195	COG0823	Involved in the tonB-independent uptake of proteins
D9Y32_11200	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
D9Y32_11205	COG4837	Protein of unknown function (DUF1462)
D9Y32_11215	COG3479	Phenolic acid decarboxylase
D9Y32_11220	COG0457	Tetratricopeptide repeat
D9Y32_11230	COG5646	InterPro IPR014922
D9Y32_11235	COG1252	NADH dehydrogenase
D9Y32_11240	COG4844	belongs to the
D9Y32_11245	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D9Y32_11250	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
D9Y32_11255	COG0316	Belongs to the HesB IscA family
D9Y32_11260	COG0456	acetyltransferase
D9Y32_11275	COG0492	ferredoxin-NADP+ reductase activity
D9Y32_11280	COG1252	NADH dehydrogenase
D9Y32_11290	COG3584	3D domain protein
D9Y32_11295	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
D9Y32_11300	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
D9Y32_11305	COG2056	Na+-H+ antiporter family
D9Y32_11310	COG1268	BioY protein
D9Y32_11315	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D9Y32_11325	COG0686	Belongs to the AlaDH PNT family
D9Y32_11330	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
D9Y32_11330	COG2508	Transcriptional regulator
D9Y32_11335	COG1115	amino acid carrier protein
D9Y32_11340	COG4842	Belongs to the WXG100 family
D9Y32_11345	COG5417	Belongs to the EsaB family
D9Y32_11350	COG4499	WXG100 protein secretion system (Wss), protein YukC
D9Y32_11355	COG0433	COG0433 Predicted ATPase
D9Y32_11355	COG1674	ftsk spoiiie
D9Y32_11360	COG1511	domain protein
D9Y32_11370	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_11375	COG1418	mRNA catabolic process
D9Y32_11390	COG1959	2 iron, 2 sulfur cluster binding
D9Y32_11395	COG0628	permease
D9Y32_11410	COG5506	Protein of unknown function (DUF1694)
D9Y32_11415	COG1335	isochorismatase
D9Y32_11420	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
D9Y32_11455	COG4585	Histidine kinase
D9Y32_11460	COG2197	response regulator
D9Y32_11465	COG2050	protein possibly involved in aromatic compounds catabolism
D9Y32_11470	COG1320	monovalent cation:proton antiporter activity
D9Y32_11475	COG2212	antiporter activity
D9Y32_11480	COG1863	multisubunit Na H antiporter MnhE subunit
D9Y32_11485	COG0651	ATP synthesis coupled electron transport
D9Y32_11490	COG1006	Multisubunit Na H antiporter MnhC subunit
D9Y32_11495	COG2111	Na H antiporter
D9Y32_11500	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
D9Y32_11500	COG2111	Na H antiporter
D9Y32_11510	COG3493	citrate carrier protein
D9Y32_11515	COG0688	phosphatidylethanolamine metabolic process
D9Y32_11520	COG0586	Pfam SNARE associated Golgi protein
D9Y32_11525	COG1183	phosphatidylcholine synthase activity
D9Y32_11535	COG4565	transcriptional regulatory protein
D9Y32_11540	COG3290	protein histidine kinase activity
D9Y32_11550	COG3011	Protein conserved in bacteria
D9Y32_11560	COG2814	Major facilitator Superfamily
D9Y32_11565	COG5018	Exonuclease
D9Y32_11580	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
D9Y32_11595	COG2267	carboxylic ester hydrolase activity
D9Y32_11600	COG1522	sequence-specific DNA binding
D9Y32_11605	COG0436	Aminotransferase
D9Y32_11610	COG1098	S1 RNA binding domain
D9Y32_11615	COG2155	Conserved Protein
D9Y32_11620	COG1979	alcohol dehydrogenase
D9Y32_11625	COG0166	Belongs to the GPI family
D9Y32_11635	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
D9Y32_11640	COG2323	membrane
D9Y32_11650	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D9Y32_11665	COG2738	Putative neutral zinc metallopeptidase
D9Y32_11670	COG1253	flavin adenine dinucleotide binding
D9Y32_11675	COG5297	Belongs to the glycosyl hydrolase family 6
D9Y32_11690	COG0366	Alpha amylase catalytic
D9Y32_11695	COG0432	Pfam Uncharacterised protein family UPF0047
D9Y32_11700	COG2070	2-Nitropropane dioxygenase
D9Y32_11710	COG0840	transmembrane signaling receptor activity
D9Y32_11715	COG0840	transmembrane signaling receptor activity
D9Y32_11720	COG0840	transmembrane signaling receptor activity
D9Y32_11725	COG0693	protein deglycase activity
D9Y32_11735	COG0628	permease
D9Y32_11740	COG1968	undecaprenyl-diphosphatase activity
D9Y32_11745	COG1408	metallophosphoesterase
D9Y32_11750	COG0726	polysaccharide deacetylase
D9Y32_11755	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
D9Y32_11765	COG3478	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
D9Y32_11810	COG2140	Oxalate decarboxylase
D9Y32_11815	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D9Y32_11820	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
D9Y32_11830	COG1510	regulation of RNA biosynthetic process
D9Y32_11840	COG1454	alcohol dehydrogenase
D9Y32_11850	COG2318	DinB family
D9Y32_11860	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D9Y32_11865	COG0569	domain protein
D9Y32_11870	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
D9Y32_11875	COG0457	Tetratricopeptide repeat
D9Y32_11890	COG3764	Sortase (surface protein transpeptidase)
D9Y32_11895	COG3859	Proton-coupled thiamine transporter YuaJ
D9Y32_11900	COG1609	Transcriptional regulator
D9Y32_12025	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
D9Y32_12030	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D9Y32_12035	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D9Y32_12040	COG0297	glycogen (starch) synthase activity
D9Y32_12045	COG0058	SHG alpha-glucan phosphorylase activity
D9Y32_12050	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9Y32_12055	COG1575	Belongs to the MenA family. Type 1 subfamily
D9Y32_12060	COG1169	isochorismate synthase
D9Y32_12065	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
D9Y32_12070	COG0596	Alpha beta hydrolase
D9Y32_12075	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
D9Y32_12080	COG0318	PFAM AMP-dependent synthetase and ligase
D9Y32_12085	COG4948	Mandelate Racemase Muconate Lactonizing
D9Y32_12100	COG1294	oxidase, subunit
D9Y32_12105	COG1271	oxidase subunit
D9Y32_12110	COG0254	rRNA binding
D9Y32_12115	COG0803	Belongs to the bacterial solute-binding protein 9 family
D9Y32_12120	COG0523	cobalamin synthesis protein
D9Y32_12125	COG0288	reversible hydration of carbon dioxide
D9Y32_12130	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D9Y32_12135	COG1854	S-ribosylhomocysteine lyase activity
D9Y32_12150	COG0783	Belongs to the Dps family
D9Y32_12155	COG4824	toxin secretion phage lysis holin
D9Y32_12175	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D9Y32_12180	COG1116	anion transmembrane transporter activity
D9Y32_12185	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D9Y32_12190	COG1506	peptidase
D9Y32_12205	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
D9Y32_12210	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
D9Y32_12215	COG0367	asparagine synthase
D9Y32_12220	COG0438	transferase activity, transferring glycosyl groups
D9Y32_12220	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
D9Y32_12225	COG0671	phosphoesterase, PA-phosphatase related
D9Y32_12230	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D9Y32_12235	COG2267	carboxylic ester hydrolase activity
D9Y32_12245	COG1301	dicarboxylic acid transport
D9Y32_12250	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
D9Y32_12255	COG1242	4 iron, 4 sulfur cluster binding
D9Y32_12265	COG1725	Transcriptional regulator
D9Y32_12270	COG1131	(ABC) transporter
D9Y32_12280	COG1136	(ABC) transporter
D9Y32_12285	COG0577	efflux transmembrane transporter activity
D9Y32_12290	COG2433	Pfam Transposase IS66
D9Y32_12300	COG2814	Major facilitator Superfamily
D9Y32_12310	COG0495	leucyl-tRNA aminoacylation
D9Y32_12315	COG0346	lactoylglutathione lyase activity
D9Y32_12320	COG0583	DNA-binding transcription factor activity
D9Y32_12330	COG1073	alpha beta
D9Y32_12335	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D9Y32_12340	COG0395	ABC-type sugar transport system, permease component
D9Y32_12345	COG1653	transport
D9Y32_12350	COG2207	Transcriptional regulator
D9Y32_12355	COG4209	transmembrane transport
D9Y32_12360	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
D9Y32_12365	COG1653	transport
D9Y32_12370	COG0673	inositol 2-dehydrogenase activity
D9Y32_12375	COG5578	integral membrane protein
D9Y32_12390	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9Y32_12400	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D9Y32_12405	COG2081	HI0933 family
D9Y32_12410	COG2244	polysaccharide biosynthetic process
D9Y32_12415	COG1187	pseudouridine synthase activity
D9Y32_12420	COG1349	DNA-binding transcription factor activity
D9Y32_12425	COG2252	PERMEase
D9Y32_12430	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9Y32_12445	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9Y32_12450	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
D9Y32_12460	COG1597	lipid kinase activity
D9Y32_12465	COG1523	belongs to the glycosyl hydrolase 13 family
D9Y32_12480	COG0220	tRNA (guanine-N7-)-methyltransferase activity
D9Y32_12485	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9Y32_12490	COG0281	malic enzyme
D9Y32_12495	COG5584	Small secreted protein
D9Y32_12500	COG1363	Peptidase, m42
D9Y32_12510	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_12515	COG4848	Belongs to the UPF0354 family
D9Y32_12520	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9Y32_12525	COG1674	ftsk spoiiie
D9Y32_12535	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
D9Y32_12540	COG4980	gas vesicle protein
D9Y32_12545	COG3118	belongs to the thioredoxin family
D9Y32_12555	COG1605	Chorismate mutase
D9Y32_12555	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
D9Y32_12560	COG1609	Transcriptional regulator
D9Y32_12565	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D9Y32_12570	COG1360	Flagellar Motor Protein
D9Y32_12575	COG0123	including yeast histone deacetylase and acetoin utilization protein
D9Y32_12580	COG0517	IMP dehydrogenase activity
D9Y32_12585	COG0454	-acetyltransferase
D9Y32_12590	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D9Y32_12595	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
D9Y32_12600	COG1522	sequence-specific DNA binding
D9Y32_12605	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
D9Y32_12610	COG3152	Membrane
D9Y32_12625	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
D9Y32_12635	COG1956	GAF domain-containing protein
D9Y32_12640	COG1309	transcriptional regulator
D9Y32_12645	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
D9Y32_12650	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
D9Y32_12655	COG1114	Component of the transport system for branched-chain amino acids
D9Y32_12660	COG1104	cysteine desulfurase activity
D9Y32_12665	COG0301	tRNA thio-modification
D9Y32_12675	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D9Y32_12685	COG0477	Major facilitator Superfamily
D9Y32_12690	COG1566	PFAM secretion protein HlyD family protein
D9Y32_12695	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
D9Y32_12700	COG0616	signal peptide processing
D9Y32_12705	COG1714	RDD family
D9Y32_12715	COG3874	Sporulation protein YtfJ
D9Y32_12720	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
D9Y32_12725	COG0827	DNA restriction-modification system
D9Y32_12730	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
D9Y32_12735	COG0521	Mo-molybdopterin cofactor biosynthetic process
D9Y32_12740	COG0137	argininosuccinate synthase activity
D9Y32_12745	COG0165	Argininosuccinate lyase
D9Y32_12750	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_12755	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
D9Y32_12760	COG1695	Transcriptional regulator
D9Y32_12765	COG4109	DRTGG domain
D9Y32_12775	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
D9Y32_12795	COG0587	DNA-directed DNA polymerase activity
D9Y32_12800	COG0281	malic enzyme
D9Y32_12805	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
D9Y32_12810	COG0825	malonyl-CoA metabolic process
D9Y32_12815	COG0205	6-phosphofructokinase activity
D9Y32_12825	COG3030	protein affecting phage T7 exclusion by the F plasmid
D9Y32_12830	COG0628	permease
D9Y32_12835	COG2707	UPF0756 membrane protein
D9Y32_12840	COG0372	Belongs to the citrate synthase family
D9Y32_12845	COG0538	isocitrate dehydrogenase activity
D9Y32_12850	COG0039	L-malate dehydrogenase activity
D9Y32_12855	COG0745	RESPONSE REGULATOR receiver
D9Y32_12860	COG5002	protein histidine kinase activity
D9Y32_12865	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9Y32_12865	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9Y32_12870	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
D9Y32_12875	COG1971	Probably functions as a manganese efflux pump
D9Y32_12880	COG0237	dephospho-CoA kinase activity
D9Y32_12890	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D9Y32_12895	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
D9Y32_12910	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
D9Y32_12915	COG3611	Membrane attachment protein
D9Y32_12920	COG1484	DNA-dependent DNA replication
D9Y32_12925	COG0398	Pfam SNARE associated Golgi protein
D9Y32_12935	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
D9Y32_12950	COG3275	phosphorelay sensor kinase activity
D9Y32_12955	COG3279	Response regulator of the LytR AlgR family
D9Y32_12960	COG3540	Alkaline phosphatase
D9Y32_12970	COG1346	cytolysis
D9Y32_12975	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
D9Y32_12980	COG0291	Belongs to the bacterial ribosomal protein bL35 family
D9Y32_12985	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
D9Y32_12990	COG3326	Membrane
D9Y32_13000	COG1363	Peptidase, m42
D9Y32_13005	COG3507	Belongs to the glycosyl hydrolase 43 family
D9Y32_13010	COG2160	L-arabinose isomerase activity
D9Y32_13015	COG1069	ribulokinase activity
D9Y32_13020	COG0235	Class ii aldolase
D9Y32_13025	COG0371	Dehydrogenase
D9Y32_13030	COG1653	transport
D9Y32_13035	COG1175	transmembrane transport
D9Y32_13040	COG0395	ABC-type sugar transport system, permease component
D9Y32_13055	COG1966	Carbon starvation protein
D9Y32_13065	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D9Y32_13070	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
D9Y32_13075	COG0072	phenylalanine-tRNA ligase activity
D9Y32_13075	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9Y32_13090	COG1137	ATPase activity
D9Y32_13115	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
D9Y32_13120	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
D9Y32_13125	COG1286	toxin biosynthetic process
D9Y32_13130	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
D9Y32_13130	COG1796	DNA polymerase
D9Y32_13135	COG1193	negative regulation of DNA recombination
D9Y32_13140	COG3766	membrane
D9Y32_13145	COG0318	PFAM AMP-dependent synthetase and ligase
D9Y32_13150	COG1309	transcriptional regulator
D9Y32_13155	COG1024	Enoyl-CoA hydratase
D9Y32_13160	COG2086	electron transfer activity
D9Y32_13165	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
D9Y32_13170	COG3118	belongs to the thioredoxin family
D9Y32_13175	COG0322	excinuclease ABC activity
D9Y32_13185	COG0527	aspartate kinase activity
D9Y32_13190	COG1719	4-vinyl reductase, 4VR
D9Y32_13195	COG2009	succinate dehydrogenase
D9Y32_13200	COG1053	succinate dehydrogenase
D9Y32_13205	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D9Y32_13210	COG0824	Thioesterase
D9Y32_13215	COG4221	oxidoreductase activity
D9Y32_13220	COG2197	response regulator
D9Y32_13225	COG1846	Transcriptional regulator
D9Y32_13230	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
D9Y32_13235	COG5401	PFAM Sporulation and spore germination
D9Y32_13240	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
D9Y32_13245	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
D9Y32_13250	COG0622	Phosphoesterase
D9Y32_13270	COG0457	Tetratricopeptide repeat
D9Y32_13320	COG1783	phage Terminase large subunit
D9Y32_13325	COG5518	Phage portal protein
D9Y32_13345	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D9Y32_13355	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D9Y32_13360	COG0028	Belongs to the TPP enzyme family
D9Y32_13365	COG0440	acetolactate synthase activity
D9Y32_13370	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
D9Y32_13375	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
D9Y32_13380	COG0473	3-isopropylmalate dehydrogenase activity
D9Y32_13385	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
D9Y32_13390	COG0066	3-isopropylmalate dehydratase activity
D9Y32_13395	COG1477	protein flavinylation
D9Y32_13395	COG0457	Tetratricopeptide repeat
D9Y32_13400	COG0544	peptidyl-prolyl cis-trans isomerase activity
D9Y32_13405	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
D9Y32_13410	COG1067	ATP-dependent peptidase activity
D9Y32_13410	COG0470	DNA polymerase III
D9Y32_13415	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
D9Y32_13420	COG0218	Necessary for normal cell division and for the maintenance of normal septation
D9Y32_13430	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
D9Y32_13435	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D9Y32_13440	COG0181	hydroxymethylbilane synthase activity
D9Y32_13445	COG1587	Uroporphyrinogen-III synthase
D9Y32_13450	COG0113	porphobilinogen synthase activity
D9Y32_13455	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
D9Y32_13460	COG1388	LysM domain
D9Y32_13465	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D9Y32_13475	COG0525	valine-tRNA ligase activity
D9Y32_13480	COG0285	dihydrofolate synthase activity
D9Y32_13485	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
D9Y32_13495	COG0424	maF-like protein
D9Y32_13500	COG2003	Belongs to the UPF0758 family
D9Y32_13505	COG1077	Cell shape determining protein MreB Mrl
D9Y32_13510	COG1792	Involved in formation and maintenance of cell shape
D9Y32_13515	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
D9Y32_13520	COG0850	regulation of cytokinetic process
D9Y32_13525	COG2894	cell division
D9Y32_13530	COG0640	Transcriptional regulator
D9Y32_13535	COG3832	glyoxalase III activity
D9Y32_13540	COG0739	heme binding
D9Y32_13545	COG1994	Peptidase M50
D9Y32_13550	COG0261	This protein binds to 23S rRNA in the presence of protein L20
D9Y32_13555	COG2868	ribosomal protein
D9Y32_13560	COG0211	Belongs to the bacterial ribosomal protein bL27 family
D9Y32_13565	COG3290	protein histidine kinase activity
D9Y32_13570	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
D9Y32_13575	COG4492	Belongs to the UPF0735 family
D9Y32_13580	COG0077	Prephenate dehydratase
D9Y32_13585	COG1827	regulation of RNA biosynthetic process
D9Y32_13590	COG1104	cysteine desulfurase activity
D9Y32_13595	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
D9Y32_13600	COG0157	Belongs to the NadC ModD family
D9Y32_13605	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
D9Y32_13610	COG1388	LysM domain
D9Y32_13620	COG0217	transcriptional regulatory protein
D9Y32_13635	COG4195	phage-related replication protein
D9Y32_13640	COG2318	DinB family
D9Y32_13650	COG2112	serine threonine protein kinase
D9Y32_13660	COG0632	four-way junction helicase activity
D9Y32_13665	COG2255	four-way junction helicase activity
D9Y32_13675	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
D9Y32_13680	COG0343	queuine tRNA-ribosyltransferase activity
D9Y32_13685	COG1862	Preprotein translocase
D9Y32_13695	COG2323	membrane
D9Y32_13700	COG2244	polysaccharide biosynthetic process
D9Y32_13710	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D9Y32_13710	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D9Y32_13715	COG5416	Lipopolysaccharide assembly protein A domain
D9Y32_13720	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D9Y32_13720	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
D9Y32_13725	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D9Y32_13735	COG1490	D-aminoacyl-tRNA deacylase activity
D9Y32_13740	COG4991	sh3 domain protein
D9Y32_13740	COG3103	Sh3 type 3 domain protein
D9Y32_13740	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9Y32_13745	COG0124	histidyl-tRNA synthetase
D9Y32_13750	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
D9Y32_13760	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
D9Y32_13765	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
D9Y32_13770	COG1959	2 iron, 2 sulfur cluster binding
D9Y32_13775	COG1104	cysteine desulfurase activity
D9Y32_13780	COG0482	sulfurtransferase activity
D9Y32_13785	COG0457	Tetratricopeptide repeat
D9Y32_13790	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D9Y32_13795	COG3881	PFAM PRC-barrel domain
D9Y32_13810	COG0628	permease
D9Y32_13815	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
D9Y32_13820	COG4472	Bacterial protein of unknown function (DUF965)
D9Y32_13825	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
D9Y32_13830	COG3906	Belongs to the UPF0473 family
D9Y32_13835	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D9Y32_13855	COG0572	uridine kinase
D9Y32_13860	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D9Y32_13865	COG0768	penicillin binding
D9Y32_13880	COG2226	methyltransferase
D9Y32_13885	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D9Y32_13890	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9Y32_13895	COG0626	cystathionine gamma-synthase activity
D9Y32_13920	COG2226	methyltransferase
D9Y32_13925	COG1404	Belongs to the peptidase S8 family
D9Y32_13930	COG1309	transcriptional regulator
D9Y32_13935	COG2124	cytochrome p450
D9Y32_13935	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
D9Y32_13945	COG2814	Major facilitator Superfamily
D9Y32_13950	COG0583	DNA-binding transcription factor activity
D9Y32_13955	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_13965	COG1587	Uroporphyrinogen-III synthase
D9Y32_13970	COG3340	Belongs to the peptidase S51 family
D9Y32_13975	COG1733	regulation of RNA biosynthetic process
D9Y32_13980	COG2814	Major facilitator Superfamily
D9Y32_13985	COG0656	L-ascorbic acid biosynthetic process
D9Y32_13990	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D9Y32_13995	COG2169	Transcriptional regulator
D9Y32_14015	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D9Y32_14015	COG3933	PFAM sigma-54 factor interaction domain-containing protein
D9Y32_14020	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_14025	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_14030	COG3715	PTS system
D9Y32_14035	COG3716	PTS system mannose fructose sorbose family IID component
D9Y32_14040	COG1621	beta-fructofuranosidase activity
D9Y32_14045	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_14060	COG0730	response to heat
D9Y32_14080	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_14100	COG4608	Belongs to the ABC transporter superfamily
D9Y32_14105	COG0444	Belongs to the ABC transporter superfamily
D9Y32_14115	COG0601	transmembrane transport
D9Y32_14120	COG0747	negative chemotaxis
D9Y32_14125	COG0492	ferredoxin-NADP+ reductase activity
D9Y32_14130	COG2197	response regulator
D9Y32_14135	COG4585	Histidine kinase
D9Y32_14140	COG3239	Fatty acid desaturase
D9Y32_14145	COG1733	regulation of RNA biosynthetic process
D9Y32_14150	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
D9Y32_14155	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
D9Y32_14160	COG0113	porphobilinogen synthase activity
D9Y32_14165	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D9Y32_14210	COG1937	Protein conserved in bacteria
D9Y32_14215	COG2210	Belongs to the sulfur carrier protein TusA family
D9Y32_14220	COG0425	Belongs to the sulfur carrier protein TusA family
D9Y32_14220	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9Y32_14225	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9Y32_14225	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9Y32_14230	COG0425	Belongs to the sulfur carrier protein TusA family
D9Y32_14235	COG0730	response to heat
D9Y32_14240	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_14245	COG4585	Histidine kinase
D9Y32_14250	COG2197	response regulator
D9Y32_14265	COG0789	Transcriptional regulator
D9Y32_14265	COG4978	Transcriptional regulator
D9Y32_14285	COG0251	oxidation-reduction process
D9Y32_14290	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D9Y32_14300	COG0251	oxidation-reduction process
D9Y32_14310	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
D9Y32_14325	COG1247	-acetyltransferase
D9Y32_14340	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9Y32_14370	COG2427	Protein of unknown function (DUF1641)
D9Y32_14375	COG3383	formate dehydrogenase (NAD+) activity
D9Y32_14380	COG5609	conserved protein (DUF2294)
D9Y32_14385	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9Y32_14390	COG2755	lipolytic protein G-D-S-L family
D9Y32_14400	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
D9Y32_14405	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
D9Y32_14410	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D9Y32_14415	COG1534	Rna-binding protein
D9Y32_14420	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
D9Y32_14425	COG1713	HD superfamily hydrolase involved in NAD metabolism
D9Y32_14430	COG0799	negative regulation of ribosome biogenesis
D9Y32_14435	COG2226	methyltransferase
D9Y32_14440	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D9Y32_14445	COG1555	photosystem II stabilization
D9Y32_14445	COG1596	polysaccharide export
D9Y32_14450	COG2131	deaminase
D9Y32_14455	COG0658	competence protein
D9Y32_14455	COG2333	competence protein COMEC
D9Y32_14465	COG1466	dna polymerase III delta subunit
D9Y32_14470	COG0268	Binds directly to 16S ribosomal RNA
D9Y32_14475	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D9Y32_14480	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9Y32_14490	COG0481	GTPase activity
D9Y32_14495	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D9Y32_14500	COG1420	regulation of RNA biosynthetic process
D9Y32_14505	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
D9Y32_14510	COG0443	Heat shock 70 kDa protein
D9Y32_14515	COG0484	heat shock protein binding
D9Y32_14520	COG2264	protein methyltransferase activity
D9Y32_14525	COG1385	rRNA (uridine-N3-)-methyltransferase activity
D9Y32_14530	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
D9Y32_14535	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
D9Y32_14540	COG1283	sodium-dependent phosphate transmembrane transporter activity
D9Y32_14545	COG0828	Belongs to the bacterial ribosomal protein bS21 family
D9Y32_14550	COG1610	YqeY-like protein
D9Y32_14555	COG1030	water channel activity
D9Y32_14560	COG4864	UPF0365 protein
D9Y32_14575	COG0561	phosphatase activity
D9Y32_14580	COG1702	phosphate starvation-inducible protein PhoH
D9Y32_14585	COG1480	7TM receptor with intracellular HD hydrolase
D9Y32_14590	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
D9Y32_14595	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D9Y32_14600	COG0295	cytidine deaminase activity
D9Y32_14605	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
D9Y32_14615	COG1381	Involved in DNA repair and RecF pathway recombination
D9Y32_14620	COG0752	glycyl-tRNA synthetase alpha subunit
D9Y32_14625	COG0751	glycine-tRNA ligase activity
D9Y32_14630	COG0517	IMP dehydrogenase activity
D9Y32_14635	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
D9Y32_14640	COG1671	Belongs to the UPF0178 family
D9Y32_14645	COG0358	DNA primase activity
D9Y32_14650	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D9Y32_14655	COG2010	Cytochrome c
D9Y32_14670	COG5444	nuclease activity
D9Y32_14745	COG3546	catalase activity
D9Y32_14770	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9Y32_14785	COG2323	membrane
D9Y32_14790	COG2323	membrane
D9Y32_14795	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9Y32_14800	COG2323	membrane
D9Y32_14805	COG2027	D-alanyl-D-alanine carboxypeptidase
D9Y32_14815	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D9Y32_14820	COG2404	hydrolase activity, acting on ester bonds
D9Y32_14825	COG1649	PFAM Uncharacterised BCR, COG1649
D9Y32_14840	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
D9Y32_14850	COG0640	Transcriptional regulator
D9Y32_14855	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
D9Y32_14860	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
D9Y32_14865	COG1609	Transcriptional regulator
D9Y32_14875	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
D9Y32_14885	COG1312	Catalyzes the dehydration of D-mannonate
D9Y32_14895	COG1725	Transcriptional regulator
D9Y32_14910	COG3711	transcriptional antiterminator
D9Y32_14910	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_14935	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_14935	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9Y32_14935	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9Y32_14940	COG1482	cell wall glycoprotein biosynthetic process
D9Y32_14945	COG1960	acyl-CoA dehydrogenase activity
D9Y32_14950	COG2084	Dehydrogenase
D9Y32_14955	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_14960	COG1024	Enoyl-CoA hydratase
D9Y32_14985	COG0789	Transcriptional regulator
D9Y32_14990	COG1064	alcohol dehydrogenase
D9Y32_14995	COG1114	Component of the transport system for branched-chain amino acids
D9Y32_15000	COG3420	alginic acid biosynthetic process
D9Y32_15015	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9Y32_15025	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
D9Y32_15035	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
D9Y32_15055	COG2223	nitrite transmembrane transporter activity
D9Y32_15060	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D9Y32_15070	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D9Y32_15090	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
D9Y32_15095	COG1140	nitrate reductase beta subunit
D9Y32_15100	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
D9Y32_15105	COG2181	nitrate reductase activity
D9Y32_15115	COG1115	amino acid carrier protein
D9Y32_15135	COG2160	L-arabinose isomerase activity
D9Y32_15150	COG1609	Transcriptional regulator
D9Y32_15155	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D9Y32_15160	COG0187	DNA topoisomerase II activity
D9Y32_15170	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
D9Y32_15175	COG4841	protein insertion into membrane
D9Y32_15200	COG0824	Thioesterase
D9Y32_15220	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_15225	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
D9Y32_15240	COG0071	Belongs to the small heat shock protein (HSP20) family
D9Y32_15250	COG4846	Membrane protein involved in cytochrome C biogenesis
D9Y32_15255	COG2201	protein-glutamate methylesterase activity
D9Y32_15260	COG0785	Cytochrome C biogenesis protein
D9Y32_15270	COG3763	UPF0154 protein
D9Y32_15280	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D9Y32_15285	COG4224	UPF0291 protein
D9Y32_15290	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
D9Y32_15295	COG1388	LysM domain
D9Y32_15300	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
D9Y32_15305	COG3209	COG3209 Rhs family protein
D9Y32_15310	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
D9Y32_15325	COG0655	NAD(P)H dehydrogenase (quinone) activity
D9Y32_15330	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D9Y32_15335	COG0346	lactoylglutathione lyase activity
D9Y32_15340	COG0778	Nitroreductase
D9Y32_15345	COG1846	Transcriptional regulator
D9Y32_15370	COG3546	catalase activity
D9Y32_15390	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D9Y32_15395	COG2076	Multidrug Resistance protein
D9Y32_15400	COG2076	Multidrug Resistance protein
D9Y32_15405	COG1309	transcriptional regulator
D9Y32_15445	COG1073	alpha beta
D9Y32_15485	COG0174	glutamine synthetase
D9Y32_15490	COG0789	Transcriptional regulator
D9Y32_15495	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
D9Y32_15500	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
D9Y32_15505	COG0464	growth
D9Y32_15560	COG1309	transcriptional regulator
D9Y32_15595	COG0697	spore germination
D9Y32_15600	COG1802	Transcriptional regulator
D9Y32_15610	COG0822	iron-sulfur transferase activity
D9Y32_15620	COG4112	unkown
D9Y32_15625	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9Y32_15630	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9Y32_15635	COG1780	Probably involved in ribonucleotide reductase function
D9Y32_15650	COG1923	regulation of RNA biosynthetic process
D9Y32_15655	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
D9Y32_15670	COG2076	Multidrug Resistance protein
D9Y32_15675	COG2076	Multidrug Resistance protein
D9Y32_15680	COG1764	response to oxidative stress
D9Y32_15690	COG0702	epimerase
D9Y32_15695	COG3631	Ketosteroid isomerase-related protein
D9Y32_15700	COG1309	transcriptional regulator
D9Y32_15705	COG1388	LysM domain
D9Y32_15705	COG3858	chitin binding
D9Y32_15715	COG5577	PFAM Coat F domain
D9Y32_15720	COG0531	amino acid
D9Y32_15725	COG1819	glycosyl
D9Y32_15730	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9Y32_15735	COG0398	Pfam SNARE associated Golgi protein
D9Y32_15750	COG2267	carboxylic ester hydrolase activity
D9Y32_15755	COG2814	Major facilitator Superfamily
D9Y32_15760	COG3263	regulation of cellular component size
D9Y32_15765	COG3619	membrane
D9Y32_15785	COG1247	-acetyltransferase
D9Y32_15795	COG0523	cobalamin synthesis protein
D9Y32_15815	COG5444	nuclease activity
D9Y32_15820	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
D9Y32_15825	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
D9Y32_15830	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
D9Y32_15840	COG4550	Control of competence regulator ComK, YlbF/YmcA
D9Y32_15845	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
D9Y32_15850	COG0156	8-amino-7-oxononanoate synthase activity
D9Y32_15855	COG1063	alcohol dehydrogenase
D9Y32_15865	COG2359	stage V sporulation protein S
D9Y32_15870	COG1692	metallophosphoesterase
D9Y32_15875	COG1418	mRNA catabolic process
D9Y32_15880	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
D9Y32_15885	COG1058	Belongs to the CinA family
D9Y32_15885	COG1546	Belongs to the CinA family
D9Y32_15890	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D9Y32_15895	COG1426	Protein conserved in bacteria
D9Y32_15910	COG0300	oxidoreductase activity
D9Y32_15915	COG0612	Peptidase, M16
D9Y32_15920	COG0612	Peptidase, M16
D9Y32_15925	COG2814	Major facilitator Superfamily
D9Y32_15930	COG2188	Transcriptional regulator
D9Y32_15935	COG4980	gas vesicle protein
D9Y32_15935	COG1674	ftsk spoiiie
D9Y32_15945	COG0740	serine-type endopeptidase activity
D9Y32_15950	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
D9Y32_15960	COG0527	aspartate kinase activity
D9Y32_15965	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D9Y32_15970	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D9Y32_15975	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D9Y32_15980	COG1873	PFAM PRC-barrel domain
D9Y32_15985	COG0612	Peptidase, M16
D9Y32_15990	COG0726	polysaccharide deacetylase
D9Y32_15995	COG1185	polyribonucleotide nucleotidyltransferase activity
D9Y32_16000	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
D9Y32_16005	COG0196	riboflavin kinase activity
D9Y32_16010	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
D9Y32_16015	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
D9Y32_16020	COG1550	Protein conserved in bacteria
D9Y32_16025	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
D9Y32_16030	COG1358	cellular component organization or biogenesis
D9Y32_16035	COG2740	Nucleic-acid-binding protein implicated in transcription termination
D9Y32_16040	COG0195	Participates in both transcription termination and antitermination
D9Y32_16045	COG0779	Required for maturation of 30S ribosomal subunits
D9Y32_16075	COG2176	DNA-directed DNA polymerase activity
D9Y32_16080	COG0442	prolyl-tRNA aminoacylation
D9Y32_16085	COG0750	zinc metalloprotease
D9Y32_16090	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
D9Y32_16095	COG4589	Belongs to the CDS family
D9Y32_16100	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
D9Y32_16105	COG0233	cytoplasmic translational termination
D9Y32_16110	COG0528	UMP kinase activity
D9Y32_16115	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
D9Y32_16120	COG0052	Belongs to the universal ribosomal protein uS2 family
D9Y32_16130	COG1191	sigma factor activity
D9Y32_16135	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
D9Y32_16145	COG0835	chemotaxis
D9Y32_16150	COG2198	Histidine kinase
D9Y32_16150	COG0643	Histidine kinase
D9Y32_16155	COG2201	protein-glutamate methylesterase activity
D9Y32_16160	COG0455	bacterial-type flagellum organization
D9Y32_16165	COG1419	protein localization to endoplasmic reticulum
D9Y32_16170	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
D9Y32_16175	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
D9Y32_16180	COG1684	flagellar biosynthetic protein fliR
D9Y32_16185	COG1987	bacterial-type flagellum assembly
D9Y32_16190	COG1338	Plays a role in the flagellum-specific transport system
D9Y32_16195	COG3190	flagellar
D9Y32_16200	COG2201	protein-glutamate methylesterase activity
D9Y32_16205	COG1776	CheC inhibitor of MCP methylation
D9Y32_16205	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9Y32_16210	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9Y32_16215	COG1580	Controls the rotational direction of flagella during chemotaxis
D9Y32_16220	COG1582	Flagellar protein (FlbD)
D9Y32_16225	COG4786	Flagellar basal body rod
D9Y32_16230	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
D9Y32_16235	COG3144	bacterial-type flagellum assembly
D9Y32_16245	COG2882	bacterial-type flagellum organization
D9Y32_16250	COG1157	protein secretion by the type III secretion system
D9Y32_16255	COG1317	bacterial-type flagellum organization
D9Y32_16260	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D9Y32_16265	COG1766	The M ring may be actively involved in energy transduction
D9Y32_16270	COG1677	Flagellar hook-basal body complex protein FliE
D9Y32_16275	COG1558	bacterial-type flagellum-dependent cell motility
D9Y32_16280	COG1815	bacterial-type flagellum-dependent cell motility
D9Y32_16285	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
D9Y32_16290	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
D9Y32_16295	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
D9Y32_16300	COG4974	Belongs to the 'phage' integrase family
D9Y32_16305	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
D9Y32_16310	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D9Y32_16315	COG0758	DNA mediated transformation
D9Y32_16320	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D9Y32_16325	COG0045	succinate-CoA ligase (ADP-forming) activity
D9Y32_16330	COG2257	FlhB HrpN YscU SpaS Family
D9Y32_16340	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
D9Y32_16345	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
D9Y32_16350	COG0335	large ribosomal subunit rRNA binding
D9Y32_16355	COG0336	Belongs to the RNA methyltransferase TrmD family
D9Y32_16360	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
D9Y32_16370	COG1837	Belongs to the UPF0109 family
D9Y32_16375	COG0228	four-way junction DNA binding
D9Y32_16385	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
D9Y32_16390	COG0552	protein localization to endoplasmic reticulum
D9Y32_16395	COG1196	nuclear chromosome segregation
D9Y32_16400	COG0571	ribonuclease III activity
D9Y32_16405	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
D9Y32_16410	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_16415	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D9Y32_16420	COG0416	fatty acid biosynthetic process
D9Y32_16425	COG1349	DNA-binding transcription factor activity
D9Y32_16430	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
D9Y32_16435	COG1760	l-serine dehydratase
D9Y32_16440	COG1760	l-serine dehydratase
D9Y32_16445	COG1461	Dihydroxyacetone kinase
D9Y32_16450	COG1302	Protein conserved in bacteria
D9Y32_16455	COG0227	Belongs to the bacterial ribosomal protein bL28 family
D9Y32_16465	COG1564	THIamine pyrophosphokinase
D9Y32_16470	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D9Y32_16475	COG1162	GTPase activity
D9Y32_16480	COG2815	serine threonine protein kinase
D9Y32_16480	COG0515	serine threonine protein kinase
D9Y32_16485	COG0631	protein serine/threonine phosphatase activity
D9Y32_16490	COG0820	rRNA (adenine-C2-)-methyltransferase activity
D9Y32_16495	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
D9Y32_16495	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
D9Y32_16500	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
D9Y32_16505	COG0242	peptide deformylase activity
D9Y32_16510	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D9Y32_16515	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D9Y32_16520	COG1758	RNA polymerase activity
D9Y32_16525	COG0194	GDP metabolic process
D9Y32_16530	COG2052	Domain of unknown function (DUF370)
D9Y32_16535	COG1561	YicC-like family, N-terminal region
D9Y32_16540	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
D9Y32_16550	COG1648	precorrin-2 dehydrogenase activity
D9Y32_16555	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
D9Y32_16560	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
D9Y32_16565	COG0529	Catalyzes the synthesis of activated sulfate
D9Y32_16570	COG2046	Belongs to the sulfate adenylyltransferase family
D9Y32_16575	COG0306	phosphate transporter
D9Y32_16580	COG0175	sulfate reduction
D9Y32_16590	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
D9Y32_16595	COG0284	orotidine-5'-phosphate decarboxylase activity
D9Y32_16600	COG0167	dihydroorotate dehydrogenase activity
D9Y32_16605	COG0543	2 iron, 2 sulfur cluster binding
D9Y32_16610	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
D9Y32_16615	COG0505	Belongs to the CarA family
D9Y32_16620	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
D9Y32_16625	COG0540	Belongs to the ATCase OTCase family
D9Y32_16630	COG2233	PERMEase
D9Y32_16635	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
D9Y32_16640	COG0564	pseudouridine synthase activity
D9Y32_16645	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
D9Y32_16650	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9Y32_16655	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
D9Y32_16660	COG3599	regulation of cell shape
D9Y32_16665	COG2302	S4 RNA-binding domain
D9Y32_16670	COG0762	integral membrane protein
D9Y32_16675	COG1799	cell septum assembly
D9Y32_16680	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
D9Y32_16690	COG1873	PFAM PRC-barrel domain
D9Y32_16695	COG0500	methyltransferase
D9Y32_16700	COG1119	ATPase activity
D9Y32_16705	COG1191	sigma factor activity
D9Y32_16710	COG1191	sigma factor activity
D9Y32_16720	COG4412	M6 family metalloprotease domain protein
D9Y32_16720	COG1404	Belongs to the peptidase S8 family
D9Y32_16730	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
D9Y32_16735	COG0849	cell division
D9Y32_16740	COG3856	small basic protein
D9Y32_16745	COG3879	Bacterial protein of unknown function (DUF881)
D9Y32_16750	COG3879	Bacterial protein of unknown function (DUF881)
D9Y32_16760	COG0812	UDP-N-acetylmuramate dehydrogenase activity
D9Y32_16765	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
D9Y32_16770	COG0772	Belongs to the SEDS family
D9Y32_16775	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
D9Y32_16780	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
D9Y32_16785	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D9Y32_16800	COG4839	cell division protein FtsL
D9Y32_16805	COG0275	rRNA processing
D9Y32_16810	COG2001	Belongs to the MraZ family
D9Y32_16815	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
D9Y32_16820	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
D9Y32_16825	COG0454	-acetyltransferase
D9Y32_16835	COG0333	Belongs to the bacterial ribosomal protein bL32 family
D9Y32_16840	COG1399	metal-binding, possibly nucleic acid-binding protein
D9Y32_16845	COG1323	Belongs to the UPF0348 family
D9Y32_16850	COG3480	Lon protease (S16) C-terminal proteolytic domain
D9Y32_16855	COG3314	Sporulation integral membrane protein YlbJ
D9Y32_16860	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
D9Y32_16865	COG0742	ribosomal rna small subunit methyltransferase
D9Y32_16870	COG4471	UPF0298 protein
D9Y32_16875	COG3679	Belongs to the UPF0342 family
D9Y32_16890	COG2340	Cysteine-rich secretory protein family
D9Y32_16895	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
D9Y32_16905	COG3336	cytochrome c oxidase
D9Y32_16910	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D9Y32_16915	COG1845	cytochrome c oxidase, subunit III
D9Y32_16920	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D9Y32_16925	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D9Y32_16925	COG2010	Cytochrome c
D9Y32_16930	COG0109	protoheme IX farnesyltransferase activity
D9Y32_16935	COG1612	heme a metabolic process
D9Y32_16940	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
D9Y32_16945	COG0772	Belongs to the SEDS family
D9Y32_16950	COG4838	Belongs to the UPF0358 family
D9Y32_16955	COG2066	Belongs to the glutaminase family
D9Y32_16960	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D9Y32_16975	COG4896	Protein conserved in bacteria
D9Y32_16980	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D9Y32_16985	COG1846	Transcriptional regulator
D9Y32_17010	COG1595	DNA-templated transcription, initiation
D9Y32_17030	COG0483	inositol monophosphate 1-phosphatase activity
D9Y32_17040	COG4493	Belongs to the UPF0637 family
D9Y32_17045	COG4476	Belongs to the UPF0223 family
D9Y32_17055	COG1982	Orn Lys Arg decarboxylase major
D9Y32_17065	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_17070	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9Y32_17075	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9Y32_17080	COG0022	dehydrogenase e1 component
D9Y32_17085	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D9Y32_17090	COG0497	DNA recombination
D9Y32_17100	COG0242	peptide deformylase activity
D9Y32_17105	COG0561	phosphatase activity
D9Y32_17115	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
D9Y32_17120	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
D9Y32_17125	COG0569	domain protein
D9Y32_17130	COG3852	Histidine kinase
D9Y32_17135	COG2002	toxin-antitoxin pair type II binding
D9Y32_17140	COG1077	Cell shape determining protein MreB Mrl
D9Y32_17150	COG2309	aminopeptidase activity
D9Y32_17160	COG0488	(ABC) transporter
D9Y32_17180	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9Y32_17180	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_17180	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D9Y32_17185	COG1105	Belongs to the carbohydrate kinase PfkB family
D9Y32_17190	COG1349	DNA-binding transcription factor activity
D9Y32_17195	COG0577	efflux transmembrane transporter activity
D9Y32_17200	COG1136	(ABC) transporter
D9Y32_17205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D9Y32_17215	COG1132	(ABC) transporter
D9Y32_17220	COG1132	(ABC) transporter
D9Y32_17230	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
D9Y32_17235	COG0314	molybdopterin synthase activity
D9Y32_17240	COG1763	Mo-molybdopterin cofactor biosynthetic process
D9Y32_17245	COG0303	'Molybdopterin
D9Y32_17250	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D9Y32_17255	COG0746	molybdenum cofactor guanylyltransferase activity
D9Y32_17270	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_17275	COG0450	alkyl hydroperoxide reductase
D9Y32_17285	COG1473	amidohydrolase
D9Y32_17290	COG2171	N-acyltransferase activity
D9Y32_17305	COG0716	FMN binding
D9Y32_17310	COG0583	DNA-binding transcription factor activity
D9Y32_17315	COG0517	IMP dehydrogenase activity
D9Y32_17325	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
D9Y32_17330	COG4703	Protein of unknown function (DUF1797)
D9Y32_17340	COG2200	EAL domain
D9Y32_17345	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_17350	COG1408	metallophosphoesterase
D9Y32_17360	COG1376	ErfK ybiS ycfS ynhG family protein
D9Y32_17365	COG2814	Major facilitator Superfamily
D9Y32_17375	COG0835	chemotaxis
D9Y32_17375	COG0784	Response regulator, receiver
D9Y32_17385	COG1714	RDD family
D9Y32_17390	COG0436	Aminotransferase
D9Y32_17395	COG4191	Histidine kinase
D9Y32_17400	COG0768	penicillin binding
D9Y32_17405	COG2340	Cysteine-rich secretory protein family
D9Y32_17410	COG2084	Dehydrogenase
D9Y32_17415	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_17420	COG0840	transmembrane signaling receptor activity
D9Y32_17425	COG0456	acetyltransferase
D9Y32_17430	COG1533	DNA photolyase activity
D9Y32_17440	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D9Y32_17445	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D9Y32_17450	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D9Y32_17450	COG1263	PTS System
D9Y32_17450	COG2190	(PTS) system
D9Y32_17455	COG3711	transcriptional antiterminator
D9Y32_17460	COG1609	Transcriptional regulator
D9Y32_17470	COG0006	proline dipeptidase activity
D9Y32_17475	COG2217	Heavy metal translocating P-type atpase
D9Y32_17480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_17485	COG2244	polysaccharide biosynthetic process
D9Y32_17490	COG3773	Cell wall hydrolase
D9Y32_17500	COG4873	Protein conserved in bacteria
D9Y32_17530	COG3655	Transcriptional regulator
D9Y32_17535	COG3739	integral membrane protein
D9Y32_17550	COG0582	viral genome integration into host DNA
D9Y32_17565	COG1388	LysM domain
D9Y32_17565	COG3409	Peptidoglycan-binding domain 1 protein
D9Y32_17565	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9Y32_17685	COG0582	viral genome integration into host DNA
D9Y32_17770	COG5444	nuclease activity
D9Y32_17820	COG4974	Belongs to the 'phage' integrase family
D9Y32_17830	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
D9Y32_17835	COG0602	queuosine metabolic process
D9Y32_17840	COG0720	synthase
D9Y32_17845	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
D9Y32_17850	COG3949	Membrane
D9Y32_17855	COG0542	response to heat
D9Y32_17860	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D9Y32_17865	COG1360	Flagellar Motor Protein
D9Y32_17870	COG1846	Transcriptional regulator
D9Y32_17875	COG3852	Histidine kinase
D9Y32_17885	COG3339	Conserved Protein
D9Y32_17890	COG0346	lactoylglutathione lyase activity
D9Y32_17895	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
D9Y32_17900	COG0235	Class ii aldolase
D9Y32_17900	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
D9Y32_17905	COG1850	ribulose-bisphosphate carboxylase activity
D9Y32_17910	COG0436	Aminotransferase
D9Y32_17915	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D9Y32_17920	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
D9Y32_17925	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
D9Y32_17930	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D9Y32_17935	COG5002	protein histidine kinase activity
D9Y32_17940	COG3594	Acyltransferase
D9Y32_17955	COG0768	penicillin binding
D9Y32_17960	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D9Y32_17965	COG0501	Belongs to the peptidase M48B family
D9Y32_17985	COG1191	sigma factor activity
D9Y32_17990	COG0861	Integral membrane protein TerC family
D9Y32_17995	COG0586	Pfam SNARE associated Golgi protein
D9Y32_18000	COG5001	Diguanylate cyclase
D9Y32_18000	COG3300	MHYT domain
D9Y32_18005	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
D9Y32_18010	COG1793	dna ligase
D9Y32_18010	COG3285	dna ligase
D9Y32_18015	COG1846	Transcriptional regulator
D9Y32_18030	COG0789	Transcriptional regulator
D9Y32_18040	COG2239	Acts as a magnesium transporter
D9Y32_18050	COG1404	Belongs to the peptidase S8 family
D9Y32_18070	COG0406	alpha-ribazole phosphatase activity
D9Y32_18075	COG0590	tRNA wobble adenosine to inosine editing
D9Y32_18085	COG1764	response to oxidative stress
D9Y32_18090	COG1846	Transcriptional regulator
D9Y32_18100	COG1764	response to oxidative stress
D9Y32_18105	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
D9Y32_18110	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
D9Y32_18115	COG0788	formyltetrahydrofolate deformylase activity
D9Y32_18120	COG2076	Multidrug Resistance protein
D9Y32_18125	COG2076	Multidrug Resistance protein
D9Y32_18130	COG2318	DinB family
D9Y32_18150	COG3866	Pectate lyase
D9Y32_18155	COG2323	membrane
D9Y32_18160	COG1607	acyl-coa hydrolase
D9Y32_18165	COG1834	amidinotransferase
D9Y32_18170	COG4608	Belongs to the ABC transporter superfamily
D9Y32_18175	COG0791	NLP P60 protein
D9Y32_18180	COG4948	Mandelate Racemase Muconate Lactonizing
D9Y32_18185	COG1619	proteins homologs of microcin C7 resistance protein MccF
D9Y32_18190	COG4166	transmembrane transport
D9Y32_18195	COG0444	Belongs to the ABC transporter superfamily
D9Y32_18200	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9Y32_18205	COG0601	transmembrane transport
D9Y32_18210	COG2362	D-Aminopeptidase
D9Y32_18215	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D9Y32_18220	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D9Y32_18230	COG0346	lactoylglutathione lyase activity
D9Y32_18235	COG0531	amino acid
D9Y32_18240	COG0395	ABC-type sugar transport system, permease component
D9Y32_18245	COG4209	transmembrane transport
D9Y32_18250	COG1653	transport
D9Y32_18260	COG1874	Beta-galactosidase
D9Y32_18265	COG2755	lipolytic protein G-D-S-L family
D9Y32_18270	COG0667	Aldo Keto reductase
D9Y32_18275	COG3401	FG-GAP repeat protein
D9Y32_18280	COG2755	lipolytic protein G-D-S-L family
D9Y32_18290	COG3401	FG-GAP repeat protein
D9Y32_18295	COG5578	integral membrane protein
D9Y32_18305	COG2755	lipolytic protein G-D-S-L family
D9Y32_18310	COG2207	Transcriptional regulator
D9Y32_18315	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
D9Y32_18320	COG1175	transmembrane transport
D9Y32_18325	COG1653	transport
D9Y32_18330	COG2207	Transcriptional regulator
D9Y32_18330	COG4753	response regulator
D9Y32_18335	COG2972	Histidine kinase
D9Y32_18340	COG5578	integral membrane protein
D9Y32_18345	COG0405	Gamma-glutamyltransferase
D9Y32_18350	COG1392	Phosphate transport regulator
D9Y32_18355	COG0306	phosphate transporter
D9Y32_18370	COG2271	Major facilitator Superfamily
D9Y32_18375	COG1063	alcohol dehydrogenase
D9Y32_18380	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_18385	COG1312	Catalyzes the dehydration of D-mannonate
D9Y32_18390	COG1063	alcohol dehydrogenase
D9Y32_18395	COG1802	Transcriptional regulator
D9Y32_18405	COG3594	Acyltransferase
D9Y32_18450	COG3778	Protein conserved in bacteria
D9Y32_18455	COG3299	homolog of phage Mu protein gp47
D9Y32_18460	COG3628	GPW Gp25 family protein
D9Y32_18470	COG4193	domain, Protein
D9Y32_18475	COG1652	LysM domain
D9Y32_18480	COG5412	phage tail tape measure protein
D9Y32_18480	COG3953	SLT domain
D9Y32_18530	COG4653	Phage capsid family
D9Y32_18535	COG0338	D12 class N6 adenine-specific DNA methyltransferase
D9Y32_18540	COG5518	Phage portal protein
D9Y32_18545	COG1783	phage Terminase large subunit
D9Y32_18550	COG5484	DNA packaging
D9Y32_18550	COG3728	DNA packaging
D9Y32_18555	COG1595	DNA-templated transcription, initiation
D9Y32_18570	COG1484	DNA-dependent DNA replication
D9Y32_18575	COG1522	sequence-specific DNA binding
D9Y32_18590	COG1396	sequence-specific DNA binding
D9Y32_18595	COG2856	Zn peptidase
D9Y32_18600	COG4195	phage-related replication protein
D9Y32_18625	COG1309	transcriptional regulator
D9Y32_18630	COG2814	Major facilitator Superfamily
D9Y32_18635	COG3584	3D domain protein
D9Y32_18635	COG1388	LysM domain
D9Y32_18645	COG0346	lactoylglutathione lyase activity
D9Y32_18650	COG0697	spore germination
D9Y32_18655	COG0583	DNA-binding transcription factor activity
D9Y32_18660	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D9Y32_18665	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
D9Y32_18670	COG0583	DNA-binding transcription factor activity
D9Y32_18680	COG0110	maltose O-acetyltransferase activity
D9Y32_18700	COG3507	Belongs to the glycosyl hydrolase 43 family
D9Y32_18705	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
D9Y32_18720	COG5505	Protein of unknown function (DUF819)
D9Y32_18725	COG0626	cystathionine gamma-synthase activity
D9Y32_18730	COG0626	cystathionine gamma-synthase activity
D9Y32_18750	COG2382	esterase
D9Y32_18755	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
D9Y32_18760	COG2153	protein acetylation
D9Y32_18765	COG2246	polysaccharide biosynthetic process
D9Y32_18770	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D9Y32_18775	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D9Y32_18780	COG0586	Pfam SNARE associated Golgi protein
D9Y32_18790	COG0210	DNA helicase
D9Y32_18845	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D9Y32_18850	COG0351	phosphomethylpyrimidine kinase
D9Y32_18855	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D9Y32_18860	COG2022	thiamine diphosphate biosynthetic process
D9Y32_18865	COG2104	thiamine diphosphate biosynthetic process
D9Y32_18875	COG0352	thiamine-phosphate diphosphorylase activity
D9Y32_18885	COG0475	glutathione-regulated potassium exporter activity
D9Y32_18885	COG0569	domain protein
D9Y32_18895	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
D9Y32_18900	COG0564	pseudouridine synthase activity
D9Y32_18905	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
D9Y32_18910	COG2357	RelA SpoT domain protein
D9Y32_18920	COG4116	CYTH
D9Y32_18925	COG0741	lytic transglycosylase activity
D9Y32_18930	COG2346	COG2346, Truncated hemoglobins
D9Y32_18940	COG1164	Oligoendopeptidase f
D9Y32_18945	COG4469	Competence protein
D9Y32_18950	COG3290	protein histidine kinase activity
D9Y32_18955	COG4565	transcriptional regulatory protein
D9Y32_18975	COG4862	establishment of competence for transformation
D9Y32_18985	COG0861	Integral membrane protein TerC family
D9Y32_18990	COG1393	Belongs to the ArsC family
D9Y32_18995	COG0456	acetyltransferase
D9Y32_19000	COG4608	Belongs to the ABC transporter superfamily
D9Y32_19005	COG0444	Belongs to the ABC transporter superfamily
D9Y32_19010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9Y32_19015	COG0601	transmembrane transport
D9Y32_19020	COG4166	transmembrane transport
D9Y32_19030	COG0180	Tryptophanyl-tRNA synthetase
D9Y32_19045	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D9Y32_19050	COG0601	transmembrane transport
D9Y32_19155	COG0582	viral genome integration into host DNA
D9Y32_19215	COG0741	lytic transglycosylase activity
D9Y32_19215	COG0739	heme binding
D9Y32_19215	COG1196	nuclear chromosome segregation
D9Y32_19220	COG0739	heme binding
D9Y32_19220	COG0741	lytic transglycosylase activity
D9Y32_19220	COG1196	nuclear chromosome segregation
D9Y32_19225	COG0739	heme binding
D9Y32_19225	COG0741	lytic transglycosylase activity
D9Y32_19225	COG1196	nuclear chromosome segregation
D9Y32_19245	COG5434	Belongs to the glycosyl hydrolase 28 family
D9Y32_19250	COG5632	N-Acetylmuramoyl-L-alanine amidase
D9Y32_19275	COG0457	Tetratricopeptide repeat
D9Y32_19280	COG2814	Major facilitator Superfamily
D9Y32_19320	COG5444	nuclease activity
D9Y32_19325	COG4282	regulation of fungal-type cell wall biogenesis
D9Y32_19335	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
D9Y32_19340	COG1509	lysine 2,3-aminomutase activity
D9Y32_19345	COG0456	acetyltransferase
D9Y32_19350	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D9Y32_19355	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
D9Y32_19360	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
D9Y32_19365	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D9Y32_19380	COG0456	acetyltransferase
D9Y32_19385	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D9Y32_19390	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D9Y32_19395	COG1846	Transcriptional regulator
D9Y32_19405	COG3706	GGDEF domain
D9Y32_19425	COG4698	Protein conserved in bacteria
D9Y32_19430	COG2755	lipolytic protein G-D-S-L family
D9Y32_19435	COG1999	signal sequence binding
D9Y32_19450	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
D9Y32_19455	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D9Y32_19460	COG1272	protein, Hemolysin III
D9Y32_19465	COG0204	Acyl-transferase
D9Y32_19470	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
D9Y32_19475	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D9Y32_19485	COG2136	Putative SAM-dependent methyltransferase
D9Y32_19485	COG2521	methyltransferase
D9Y32_19495	COG0129	dihydroxy-acid dehydratase activity
D9Y32_19500	COG1413	lyase activity
D9Y32_19505	COG1418	mRNA catabolic process
D9Y32_19510	COG0386	Belongs to the glutathione peroxidase family
D9Y32_19515	COG2759	Belongs to the formate--tetrahydrofolate ligase family
D9Y32_19520	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
D9Y32_19525	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
D9Y32_19535	COG1278	Cold shock
D9Y32_19555	COG0328	RNA-DNA hybrid ribonuclease activity
D9Y32_19560	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
D9Y32_19565	COG0328	RNA-DNA hybrid ribonuclease activity
D9Y32_19575	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D9Y32_19585	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
D9Y32_19600	COG3424	synthase
D9Y32_19605	COG0456	acetyltransferase
D9Y32_19610	COG2233	PERMEase
D9Y32_19615	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D9Y32_19620	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
D9Y32_19625	COG1199	ATP-dependent helicase activity
D9Y32_19635	COG0116	Belongs to the methyltransferase superfamily
D9Y32_19645	COG3599	regulation of cell shape
D9Y32_19650	COG4474	Belongs to the UPF0398 family
D9Y32_19660	COG3359	exonuclease
D9Y32_19665	COG1111	helicase
D9Y32_19665	COG1205	dead DEAH box helicase
D9Y32_19670	COG2190	(PTS) system
D9Y32_19675	COG0071	Belongs to the small heat shock protein (HSP20) family
D9Y32_19710	COG3331	DNA recombination
D9Y32_19715	COG4499	WXG100 protein secretion system (Wss), protein YukC
D9Y32_19715	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D9Y32_19725	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
D9Y32_19730	COG3935	DnaD domain protein
D9Y32_19735	COG0017	Asparaginyl-tRNA synthetase
D9Y32_19740	COG0436	Aminotransferase
D9Y32_19745	COG5353	protein conserved in bacteria
D9Y32_19755	COG1199	ATP-dependent helicase activity
D9Y32_19755	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D9Y32_19760	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
D9Y32_19765	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
D9Y32_19770	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
D9Y32_19785	COG0617	tRNA 3'-terminal CCA addition
D9Y32_19790	COG0438	transferase activity, transferring glycosyl groups
D9Y32_19795	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D9Y32_19800	COG1803	Methylglyoxal synthase
D9Y32_19805	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
D9Y32_19810	COG1694	Mazg nucleotide pyrophosphohydrolase
D9Y32_19815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9Y32_19825	COG4347	Protein of unknown function (DUF1405)
D9Y32_19830	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
D9Y32_19830	COG2010	Cytochrome c
D9Y32_19835	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
D9Y32_19840	COG0723	plastoquinol--plastocyanin reductase activity
D9Y32_19850	COG5582	Belongs to the UPF0302 family
D9Y32_19855	COG0457	Tetratricopeptide repeat
D9Y32_19860	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
D9Y32_19865	COG0287	Prephenate dehydrogenase
D9Y32_19870	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
D9Y32_19880	COG0133	tryptophan synthase activity
D9Y32_19885	COG0135	phosphoribosylanthranilate isomerase activity
D9Y32_19890	COG0134	indole-3-glycerol-phosphate synthase activity
D9Y32_19895	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
D9Y32_19900	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D9Y32_19905	COG4401	Chorismate mutase type I
D9Y32_19910	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
D9Y32_19915	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
D9Y32_19920	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
D9Y32_19925	COG0105	UTP biosynthetic process
D9Y32_19930	COG0142	geranyltranstransferase activity
D9Y32_19935	COG2226	methyltransferase
D9Y32_19940	COG0142	geranyltranstransferase activity
D9Y32_19955	COG0776	regulation of translation
D9Y32_19960	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
D9Y32_19980	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
D9Y32_19985	COG1160	GTP binding
D9Y32_20010	COG1304	FMN binding
D9Y32_20015	COG0539	negative regulation of cytoplasmic translation
D9Y32_20020	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
D9Y32_20025	COG2959	enzyme of heme biosynthesis
D9Y32_20030	COG3773	Cell wall hydrolase
D9Y32_20030	COG3409	Peptidoglycan-binding domain 1 protein
D9Y32_20035	COG2339	peptidase activity
D9Y32_20045	COG0492	ferredoxin-NADP+ reductase activity
D9Y32_20050	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D9Y32_20055	COG4862	establishment of competence for transformation
D9Y32_20060	COG1408	metallophosphoesterase
D9Y32_20070	COG1388	LysM domain
D9Y32_20075	COG1266	CAAX protease self-immunity
D9Y32_20080	COG0514	ATP-dependent DNA helicase (RecQ)
D9Y32_20085	COG4955	Helix-turn-helix domain
D9Y32_20090	COG1141	Ferredoxin
D9Y32_20095	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
D9Y32_20100	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D9Y32_20105	COG0739	heme binding
D9Y32_20115	COG1595	DNA-templated transcription, initiation
D9Y32_20135	COG5002	protein histidine kinase activity
D9Y32_20140	COG0745	RESPONSE REGULATOR receiver
D9Y32_20145	COG5002	protein histidine kinase activity
D9Y32_20150	COG0745	RESPONSE REGULATOR receiver
D9Y32_20155	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D9Y32_20160	COG1333	cytochrome c biogenesis protein
D9Y32_20165	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_20170	COG1187	pseudouridine synthase activity
D9Y32_20175	COG0700	Nucleoside recognition
D9Y32_20180	COG2715	membrane protein required for spore maturation
D9Y32_20185	COG1686	Belongs to the peptidase S11 family
D9Y32_20195	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
D9Y32_20200	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
D9Y32_20210	COG1547	Domain of unknown function (DUF309)
D9Y32_20215	COG0456	acetyltransferase
D9Y32_20220	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
D9Y32_20225	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
D9Y32_20225	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
D9Y32_20230	COG0307	riboflavin synthase, alpha
D9Y32_20235	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D9Y32_20235	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D9Y32_20260	COG0457	Tetratricopeptide repeat
D9Y32_20265	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D9Y32_20270	COG4086	secreted protein
D9Y32_20275	COG4195	phage-related replication protein
D9Y32_20280	COG0019	diaminopimelate decarboxylase activity
D9Y32_20290	COG0697	spore germination
D9Y32_20305	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9Y32_20340	COG1686	Belongs to the peptidase S11 family
D9Y32_20345	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
D9Y32_20350	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
D9Y32_20355	COG4974	Belongs to the 'phage' integrase family
D9Y32_20365	COG0735	belongs to the Fur family
D9Y32_20370	COG1300	Membrane
D9Y32_20375	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_20385	COG1953	Uracil, thiamine, allantoin
D9Y32_20395	COG2153	protein acetylation
D9Y32_20400	COG1379	DNA repair
D9Y32_20405	COG0494	nUDIX hydrolase
D9Y32_20415	COG1309	transcriptional regulator
D9Y32_20425	COG0667	Aldo Keto reductase
D9Y32_20435	COG1073	alpha beta
D9Y32_20445	COG4918	Iron-sulphur cluster biosynthesis
D9Y32_20455	COG0456	acetyltransferase
D9Y32_20455	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
D9Y32_20460	COG2329	Antibiotic biosynthesis monooxygenase
D9Y32_20470	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
D9Y32_20480	COG0747	negative chemotaxis
D9Y32_20485	COG0601	transmembrane transport
D9Y32_20495	COG0444	Belongs to the ABC transporter superfamily
D9Y32_20505	COG0534	Mate efflux family protein
D9Y32_20520	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D9Y32_20530	COG2211	Major facilitator Superfamily
D9Y32_20535	COG0346	lactoylglutathione lyase activity
D9Y32_20540	COG1072	(Pantothenic acid kinase))
D9Y32_20575	COG4195	phage-related replication protein
D9Y32_20585	COG0300	oxidoreductase activity
D9Y32_20590	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9Y32_20595	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D9Y32_20600	COG4187	Peptidase family M20/M25/M40
D9Y32_20605	COG1902	pentaerythritol trinitrate reductase activity
D9Y32_20610	COG0596	Alpha beta hydrolase
D9Y32_20615	COG0267	Belongs to the bacterial ribosomal protein bL33 family
D9Y32_20620	COG1234	tRNA 3'-trailer cleavage
D9Y32_20625	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
D9Y32_20645	COG2188	Transcriptional regulator
D9Y32_20650	COG2723	6-phospho-beta-galactosidase activity
D9Y32_20655	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_20660	COG1447	Phosphotransferase system cellobiose-specific component IIA
D9Y32_20665	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D9Y32_20670	COG1785	Belongs to the alkaline phosphatase family
D9Y32_20675	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_20680	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
D9Y32_20685	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D9Y32_20695	COG0706	membrane insertase activity
D9Y32_20700	COG2195	Cleaves the N-terminal amino acid of tripeptides
D9Y32_20705	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
D9Y32_20710	COG4129	membrane
D9Y32_20715	COG1126	abc transporter atp-binding protein
D9Y32_20720	COG0765	amino acid transport
D9Y32_20725	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D9Y32_20735	COG1597	lipid kinase activity
D9Y32_20740	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9Y32_20745	COG0022	dehydrogenase e1 component
D9Y32_20750	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D9Y32_20755	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D9Y32_20760	COG3426	butyrate kinase activity
D9Y32_20770	COG0280	phosphate acetyltransferase
D9Y32_20775	COG3290	protein histidine kinase activity
D9Y32_20775	COG3829	transcription factor binding
D9Y32_20785	COG0584	glycerophosphoryl diester phosphodiesterase
D9Y32_20790	COG0860	N-Acetylmuramoyl-L-alanine amidase
D9Y32_20805	COG1045	serine acetyltransferase
D9Y32_20815	COG0745	RESPONSE REGULATOR receiver
D9Y32_20820	COG0750	zinc metalloprotease
D9Y32_20825	COG0497	DNA recombination
D9Y32_20830	COG1438	arginine binding
D9Y32_20835	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
D9Y32_20840	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
D9Y32_20845	COG0142	geranyltranstransferase activity
D9Y32_20850	COG1722	exodeoxyribonuclease VII activity
D9Y32_20855	COG1570	exodeoxyribonuclease VII activity
D9Y32_20860	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
D9Y32_20865	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
D9Y32_20870	COG1302	Protein conserved in bacteria
D9Y32_20875	COG0439	Biotin carboxylase
D9Y32_20880	COG0511	ligase activity, forming carbon-carbon bonds
D9Y32_20920	COG3854	ATPases associated with a variety of cellular activities
D9Y32_20930	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
D9Y32_20940	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
D9Y32_20950	COG3872	metal-dependent enzyme
D9Y32_20960	COG1752	Esterase of the alpha-beta hydrolase superfamily
D9Y32_20965	COG1321	iron dependent repressor
D9Y32_20970	COG0095	Lipoate-protein ligase
D9Y32_20975	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D9Y32_20980	COG2113	Glycine betaine
D9Y32_20985	COG4176	ABC-type proline glycine betaine transport system permease component
D9Y32_20990	COG4175	Glycine betaine
D9Y32_20990	COG0517	IMP dehydrogenase activity
D9Y32_20995	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
D9Y32_21000	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
D9Y32_21010	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
D9Y32_21035	COG0681	Belongs to the peptidase S26 family
D9Y32_21060	COG4940	Competence protein ComGF
D9Y32_21070	COG4970	Tfp pilus assembly protein FimT
D9Y32_21075	COG4537	Required for transformation and DNA binding
D9Y32_21080	COG1459	type II secretion system
D9Y32_21085	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D9Y32_21090	COG1366	Belongs to the anti-sigma-factor antagonist family
D9Y32_21100	COG1393	Belongs to the ArsC family
D9Y32_21110	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9Y32_21120	COG0011	TIGRFAM Protein of
D9Y32_21130	COG2866	Carboxypeptidase
D9Y32_21135	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D9Y32_21140	COG1368	sulfuric ester hydrolase activity
D9Y32_21145	COG1940	carbohydrate kinase activity
D9Y32_21155	COG0697	spore germination
D9Y32_21160	COG0457	Tetratricopeptide repeat
D9Y32_21160	COG0705	Rhomboid family
D9Y32_21165	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
D9Y32_21170	COG0267	Belongs to the bacterial ribosomal protein bL33 family
D9Y32_21175	COG0438	transferase activity, transferring glycosyl groups
D9Y32_21190	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D9Y32_21195	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D9Y32_21200	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D9Y32_21205	COG0581	inorganic phosphate transmembrane transporter activity
D9Y32_21210	COG0573	inorganic phosphate transmembrane transporter activity
D9Y32_21215	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D9Y32_21225	COG0477	Major facilitator Superfamily
D9Y32_21230	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D9Y32_21235	COG2839	Protein conserved in bacteria
D9Y32_21240	COG5521	maltodextrose utilization protein MalA
D9Y32_21245	COG1388	LysM domain
D9Y32_21250	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
D9Y32_21255	COG4709	membrane
D9Y32_21260	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
D9Y32_21265	COG0735	belongs to the Fur family
D9Y32_21270	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D9Y32_21275	COG1121	(ABC) transporter
D9Y32_21280	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9Y32_21290	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
D9Y32_21295	COG0513	Belongs to the DEAD box helicase family
D9Y32_21305	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
D9Y32_21310	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
D9Y32_21315	COG2384	SAM-dependent methyltransferase
D9Y32_21330	COG2323	membrane
D9Y32_21335	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D9Y32_21340	COG2323	membrane
D9Y32_21360	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D9Y32_21385	COG3546	catalase activity
D9Y32_21430	COG1252	NADH dehydrogenase
D9Y32_21445	COG0166	Belongs to the GPI family
D9Y32_21455	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D9Y32_21460	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
D9Y32_21465	COG1024	Enoyl-CoA hydratase
D9Y32_21470	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
D9Y32_21475	COG0511	ligase activity, forming carbon-carbon bonds
D9Y32_21480	COG0439	Biotin carboxylase
D9Y32_21485	COG0318	PFAM AMP-dependent synthetase and ligase
D9Y32_21490	COG1960	acyl-CoA dehydrogenase activity
D9Y32_21495	COG2249	NAD(P)H dehydrogenase (quinone) activity
D9Y32_21505	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
D9Y32_21510	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
D9Y32_21520	COG2323	membrane
D9Y32_21530	COG0306	phosphate transporter
D9Y32_21535	COG0175	sulfate reduction
D9Y32_21540	COG1809	phosphosulfolactate synthase activity
D9Y32_21545	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D9Y32_21550	COG4948	Mandelate Racemase Muconate Lactonizing
D9Y32_21555	COG2814	Major facilitator Superfamily
D9Y32_21560	COG0463	Glycosyl transferase, family 2
D9Y32_21575	COG0493	'glutamate synthase
D9Y32_21580	COG0067	glutamate synthase
D9Y32_21580	COG0069	glutamate synthase activity
D9Y32_21580	COG0070	glutamate synthase
D9Y32_21585	COG0583	DNA-binding transcription factor activity
D9Y32_21605	COG1846	Transcriptional regulator
D9Y32_21615	COG1132	(ABC) transporter
D9Y32_21625	COG0300	oxidoreductase activity
D9Y32_21630	COG0574	Belongs to the PEP-utilizing enzyme family
D9Y32_21630	COG3848	Pyruvate phosphate dikinase
D9Y32_21635	COG0477	Major facilitator Superfamily
D9Y32_21640	COG0243	molybdopterin cofactor binding
D9Y32_21645	COG1846	Transcriptional regulator
D9Y32_21655	COG0531	amino acid
D9Y32_21670	COG0531	amino acid
D9Y32_21685	COG0840	transmembrane signaling receptor activity
D9Y32_21690	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D9Y32_21695	COG1404	Belongs to the peptidase S8 family
D9Y32_21705	COG1309	transcriptional regulator
D9Y32_21710	COG1846	Transcriptional regulator
D9Y32_21740	COG1309	transcriptional regulator
D9Y32_21745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9Y32_21750	COG3708	Transcriptional regulator
D9Y32_21760	COG2378	regulation of single-species biofilm formation
D9Y32_21770	COG0640	Transcriptional regulator
D9Y32_21775	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D9Y32_21785	COG0531	amino acid
D9Y32_21790	COG0741	lytic transglycosylase activity
D9Y32_21795	COG1086	Polysaccharide biosynthesis protein
D9Y32_21815	COG2322	membrane
D9Y32_21830	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9Y32_21835	COG1388	LysM domain
D9Y32_21835	COG3584	3D domain protein
D9Y32_21840	COG0514	ATP-dependent DNA helicase (RecQ)
D9Y32_21860	COG2315	Protein conserved in bacteria
D9Y32_21900	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
D9Y32_21950	COG0402	S-adenosylhomocysteine deaminase activity
D9Y32_21965	COG2267	carboxylic ester hydrolase activity
D9Y32_21980	COG1280	lysine exporter protein (LysE YggA)
D9Y32_21985	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
D9Y32_21995	COG0574	Belongs to the PEP-utilizing enzyme family
D9Y32_21995	COG3848	Pyruvate phosphate dikinase
D9Y32_22000	COG1309	transcriptional regulator
D9Y32_22015	COG2318	DinB family
D9Y32_22020	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
D9Y32_22025	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D9Y32_22040	COG1012	belongs to the aldehyde dehydrogenase family
D9Y32_22045	COG2814	Major facilitator Superfamily
D9Y32_22060	COG1657	PFAM Prenyltransferase squalene oxidase
D9Y32_22065	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D9Y32_22075	COG0733	neurotransmitter:sodium symporter activity
D9Y32_22080	COG0385	Bile acid
D9Y32_22085	COG0508	dehydrogenase complex catalyzes the overall conversion of
D9Y32_22090	COG0567	Dehydrogenase, E1 component
D9Y32_22095	COG4548	von Willebrand factor, type A
D9Y32_22100	COG0714	Associated with various cellular activities
D9Y32_22105	COG2032	superoxide dismutase activity
D9Y32_22110	COG1388	LysM domain
D9Y32_22110	COG0791	NLP P60 protein
D9Y32_22120	COG0534	Mate efflux family protein
D9Y32_22125	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D9Y32_22130	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
D9Y32_22150	COG4305	rare lipoprotein A
D9Y32_22160	COG1028	Short-chain dehydrogenase reductase Sdr
D9Y32_22165	COG1733	regulation of RNA biosynthetic process
D9Y32_22170	COG0778	Nitroreductase
D9Y32_22175	COG0400	carboxylic ester hydrolase activity
D9Y32_22185	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D9Y32_22190	COG0793	Belongs to the peptidase S41A family
D9Y32_22190	COG3409	Peptidoglycan-binding domain 1 protein
D9Y32_22195	COG2226	methyltransferase
D9Y32_22205	COG1876	peptidase activity
D9Y32_22210	COG0813	purine-nucleoside phosphorylase activity
D9Y32_22215	COG0701	Predicted permease
D9Y32_22235	COG0671	phosphoesterase, PA-phosphatase related
D9Y32_22250	COG4479	Belongs to the UPF0346 family
D9Y32_22265	COG3331	DNA recombination
D9Y32_22275	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
D9Y32_22300	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D9Y32_22335	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
D9Y32_22350	COG0756	dUTP diphosphatase activity
D9Y32_22360	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D9Y32_22365	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9Y32_22370	COG0270	DNA (cytosine-5-)-methyltransferase activity
D9Y32_22380	COG1372	Participates in initiation and elongation during chromosome replication
D9Y32_22380	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9Y32_22390	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D9Y32_22395	COG1780	Probably involved in ribonucleotide reductase function
D9Y32_22465	COG3584	3D domain protein
D9Y32_22470	COG0587	DNA-directed DNA polymerase activity
D9Y32_22480	COG0587	DNA-directed DNA polymerase activity
D9Y32_22485	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D9Y32_22490	COG0358	DNA primase activity
D9Y32_22495	COG0305	Participates in initiation and elongation during chromosome replication
D9Y32_22505	COG2887	Belongs to the helicase family. UvrD subfamily
D9Y32_22570	COG1793	dna ligase
D9Y32_22610	COG4474	Belongs to the UPF0398 family
D9Y32_22625	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D9Y32_22655	COG0582	viral genome integration into host DNA
D9Y32_22685	COG1404	Belongs to the peptidase S8 family
D9Y32_22780	COG3655	Transcriptional regulator
D9Y32_22885	COG0776	regulation of translation