locus-tag class description BMD_0001 PF00308 Bacterial dnaA protein BMD_0001 PF08299 Bacterial dnaA protein helix-turn-helix BMD_0001 PF11638 DnaA N-terminal domain BMD_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain BMD_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain BMD_0002 PF02767 DNA polymerase III beta subunit, central domain BMD_0004 PF02463 RecF/RecN/SMC N terminal domain BMD_0005 PF01751 Toprim domain BMD_0005 PF00204 DNA gyrase B BMD_0005 PF00986 DNA gyrase B subunit, carboxyl terminus BMD_0005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0006 PF00521 DNA gyrase/topoisomerase IV, subunit A BMD_0006 PF03989 DNA gyrase C-terminal domain, beta-propeller BMD_0012 PF14175 YaaC-like Protein BMD_0013 PF00478 IMP dehydrogenase / GMP reductase domain BMD_0013 PF00571 CBS domain BMD_0014 PF07943 Penicillin-binding protein 5, C-terminal domain BMD_0014 PF00768 D-alanyl-D-alanine carboxypeptidase BMD_0015 PF01680 SOR/SNZ family BMD_0016 PF01174 SNO glutamine amidotransferase family BMD_0017 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BMD_0017 PF02403 Seryl-tRNA synthetase N-terminal domain BMD_0019 PF01712 Deoxynucleoside kinase BMD_0020 PF01712 Deoxynucleoside kinase BMD_0021 PF00704 Glycosyl hydrolases family 18 BMD_0021 PF01476 LysM domain BMD_0022 PF00857 Isochorismatase family BMD_0023 PF14437 MafB19-like deaminase BMD_0024 PF12169 DNA polymerase III subunits gamma and tau domain III BMD_0025 PF02575 YbaB/EbfC DNA-binding family BMD_0026 PF02132 RecR protein BMD_0026 PF13662 Toprim domain BMD_0027 PF10704 Protein of unknown function (DUF2508) BMD_0028 PF07441 SigmaK-factor processing regulatory protein BofA BMD_0045 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BMD_0045 PF01276 Orn/Lys/Arg decarboxylase, major domain BMD_0046 PF02223 Thymidylate kinase BMD_0047 PF06153 Cyclic-di-AMP receptor BMD_0048 PF09115 DNA polymerase III, delta subunit, C terminal BMD_0049 PF04468 PSP1 C-terminal conserved region BMD_0050 PF06156 Initiation control protein YabA BMD_0051 PF05175 Methyltransferase small domain BMD_0052 PF01541 GIY-YIG catalytic domain BMD_0053 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_0054 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BMD_0054 PF18277 AbrB C-terminal domain BMD_0055 PF09334 tRNA synthetases class I (M) BMD_0055 PF08264 Anticodon-binding domain of tRNA BMD_0055 PF01588 Putative tRNA binding domain BMD_0056 PF01026 TatD related DNase BMD_0057 PF13662 Toprim domain BMD_0057 PF13331 Domain of unknown function (DUF4093) BMD_0058 PF00398 Ribosomal RNA adenine dimethylase BMD_0059 PF05582 YabG peptidase U57 BMD_0061 PF06257 Biofilm formation stimulator VEG BMD_0062 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_0063 PF08544 GHMP kinases C terminal BMD_0063 PF00288 GHMP kinases N terminal domain BMD_0064 PF00156 Phosphoribosyl transferase domain BMD_0064 PF09182 Bacterial purine repressor, N-terminal BMD_0065 PF01042 Endoribonuclease L-PSP BMD_0066 PF04026 SpoVG BMD_0067 PF00132 Bacterial transferase hexapeptide (six repeats) BMD_0067 PF00483 Nucleotidyl transferase BMD_0068 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BMD_0068 PF14572 Phosphoribosyl synthetase-associated domain BMD_0069 PF01386 Ribosomal L25p family BMD_0069 PF14693 Ribosomal protein TL5, C-terminal domain BMD_0070 PF01195 Peptidyl-tRNA hydrolase BMD_0071 PF10955 Protein of unknown function (DUF2757) BMD_0072 PF17757 UvrB interaction domain BMD_0072 PF03461 TRCF domain BMD_0072 PF00270 DEAD/DEAH box helicase BMD_0072 PF00271 Helicase conserved C-terminal domain BMD_0072 PF02559 CarD-like/TRCF domain BMD_0074 PF15714 Stage V sporulation protein T C-terminal, transcription factor BMD_0074 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BMD_0075 PF01943 Polysaccharide biosynthesis protein BMD_0075 PF14667 Polysaccharide biosynthesis C-terminal domain BMD_0076 PF03819 MazG nucleotide pyrophosphohydrolase domain BMD_0076 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_0077 PF01479 S4 domain BMD_0078 PF07873 YabP family BMD_0079 PF09578 Spore cortex protein YabQ (Spore_YabQ) BMD_0080 PF04977 Septum formation initiator BMD_0081 PF00575 S1 RNA binding domain BMD_0084 PF07228 Stage II sporulation protein E (SpoIIE) BMD_0085 PF00092 von Willebrand factor type A domain BMD_0086 PF00069 Protein kinase domain BMD_0087 PF01171 PP-loop family BMD_0087 PF09179 TilS substrate binding domain BMD_0087 PF11734 TilS substrate C-terminal domain BMD_0089 PF06480 FtsH Extracellular BMD_0089 PF00004 ATPase family associated with various cellular activities (AAA) BMD_0089 PF17862 AAA+ lid domain BMD_0089 PF01434 Peptidase family M41 BMD_0090 PF03309 Type III pantothenate kinase BMD_0091 PF01430 Hsp33 protein BMD_0092 PF00291 Pyridoxal-phosphate dependent enzyme BMD_0093 PF04715 Anthranilate synthase component I, N terminal region BMD_0093 PF00425 chorismate binding enzyme BMD_0094 PF00117 Glutamine amidotransferase class-I BMD_0095 PF01063 Amino-transferase class IV BMD_0096 PF02152 Dihydroneopterin aldolase BMD_0097 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BMD_0098 PF00152 tRNA synthetases class II (D, K and N) BMD_0098 PF01336 OB-fold nucleic acid binding domain BMD_0102 PF05848 CtsR N-terminal HTH domain BMD_0102 PF17727 CtsR C-terminal dimerization domain BMD_0103 PF02151 UvrB/uvrC motif BMD_0104 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BMD_0105 PF17871 AAA lid domain BMD_0105 PF02861 Clp amino terminal domain, pathogenicity island component BMD_0105 PF07724 AAA domain (Cdc48 subfamily) BMD_0105 PF00004 ATPase family associated with various cellular activities (AAA) BMD_0105 PF10431 C-terminal, D2-small domain, of ClpB protein BMD_0106 PF18073 Rubredoxin metal binding domain BMD_0107 PF10635 DisA bacterial checkpoint controller linker region BMD_0107 PF02457 DisA bacterial checkpoint controller nucleotide-binding BMD_0109 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BMD_0110 PF02542 YgbB family BMD_0111 PF00749 tRNA synthetases class I (E and Q), catalytic domain BMD_0112 PF06426 Serine acetyltransferase, N-terminal BMD_0112 PF00132 Bacterial transferase hexapeptide (six repeats) BMD_0113 PF09190 DALR domain BMD_0113 PF01406 tRNA synthetases class I (C) catalytic domain BMD_0114 PF00636 Ribonuclease III domain BMD_0115 PF08032 RNA 2'-O ribose methyltransferase substrate binding BMD_0115 PF00588 SpoU rRNA Methylase family BMD_0116 PF05991 YacP-like NYN domain BMD_0117 PF04542 Sigma-70 region 2 BMD_0117 PF08281 Sigma-70, region 4 BMD_0118 PF00471 Ribosomal protein L33 BMD_0119 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BMD_0120 PF00467 KOW motif BMD_0120 PF02357 Transcription termination factor nusG BMD_0121 PF03946 Ribosomal protein L11, N-terminal domain BMD_0121 PF00298 Ribosomal protein L11, RNA binding domain BMD_0122 PF00687 Ribosomal protein L1p/L10e family BMD_0123 PF00466 Ribosomal protein L10 BMD_0125 PF05175 Methyltransferase small domain BMD_0126 PF04561 RNA polymerase Rpb2, domain 2 BMD_0126 PF04565 RNA polymerase Rpb2, domain 3 BMD_0126 PF00562 RNA polymerase Rpb2, domain 6 BMD_0126 PF04560 RNA polymerase Rpb2, domain 7 BMD_0126 PF04563 RNA polymerase beta subunit BMD_0126 PF10385 RNA polymerase beta subunit external 1 domain BMD_0127 PF05000 RNA polymerase Rpb1, domain 4 BMD_0127 PF04997 RNA polymerase Rpb1, domain 1 BMD_0127 PF04983 RNA polymerase Rpb1, domain 3 BMD_0127 PF04998 RNA polymerase Rpb1, domain 5 BMD_0127 PF00623 RNA polymerase Rpb1, domain 2 BMD_0128 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BMD_0129 PF00164 Ribosomal protein S12/S23 BMD_0130 PF00177 Ribosomal protein S7p/S5e BMD_0131 PF00679 Elongation factor G C-terminus BMD_0131 PF14492 Elongation Factor G, domain II BMD_0131 PF03764 Elongation factor G, domain IV BMD_0131 PF00009 Elongation factor Tu GTP binding domain BMD_0131 PF03144 Elongation factor Tu domain 2 BMD_0132 PF03143 Elongation factor Tu C-terminal domain BMD_0132 PF03144 Elongation factor Tu domain 2 BMD_0132 PF00009 Elongation factor Tu GTP binding domain BMD_0133 PF00338 Ribosomal protein S10p/S20e BMD_0134 PF00297 Ribosomal protein L3 BMD_0135 PF00573 Ribosomal protein L4/L1 family BMD_0136 PF00276 Ribosomal protein L23 BMD_0137 PF03947 Ribosomal Proteins L2, C-terminal domain BMD_0137 PF00181 Ribosomal Proteins L2, RNA binding domain BMD_0138 PF00203 Ribosomal protein S19 BMD_0139 PF00237 Ribosomal protein L22p/L17e BMD_0140 PF07650 KH domain BMD_0140 PF00189 Ribosomal protein S3, C-terminal domain BMD_0141 PF00252 Ribosomal protein L16p/L10e BMD_0142 PF00831 Ribosomal L29 protein BMD_0143 PF00366 Ribosomal protein S17 BMD_0144 PF00238 Ribosomal protein L14p/L23e BMD_0145 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BMD_0145 PF00467 KOW motif BMD_0146 PF00281 Ribosomal protein L5 BMD_0146 PF00673 ribosomal L5P family C-terminus BMD_0147 PF00253 Ribosomal protein S14p/S29e BMD_0148 PF00410 Ribosomal protein S8 BMD_0149 PF00347 Ribosomal protein L6 BMD_0150 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BMD_0151 PF03719 Ribosomal protein S5, C-terminal domain BMD_0151 PF00333 Ribosomal protein S5, N-terminal domain BMD_0152 PF00327 Ribosomal protein L30p/L7e BMD_0153 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BMD_0154 PF00344 SecY translocase BMD_0155 PF05191 Adenylate kinase, active site lid BMD_0156 PF00557 Metallopeptidase family M24 BMD_0157 PF01176 Translation initiation factor 1A / IF-1 BMD_0158 PF00416 Ribosomal protein S13/S18 BMD_0159 PF00411 Ribosomal protein S11 BMD_0160 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BMD_0160 PF01000 RNA polymerase Rpb3/RpoA insert domain BMD_0160 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BMD_0161 PF01196 Ribosomal protein L17 BMD_0162 PF00005 ABC transporter BMD_0163 PF00005 ABC transporter BMD_0164 PF02361 Cobalt transport protein BMD_0165 PF01416 tRNA pseudouridine synthase BMD_0166 PF00572 Ribosomal protein L13 BMD_0167 PF00380 Ribosomal protein S9/S16 BMD_0169 PF01520 N-acetylmuramoyl-L-alanine amidase BMD_0170 PF10609 NUBPL iron-transfer P-loop NTPase BMD_0171 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_0171 PF03466 LysR substrate binding domain BMD_0172 PF17898 Spore germination GerD central core domain BMD_0173 PF14089 KinB-signalling pathway activation in sporulation BMD_0174 PF01522 Polysaccharide deacetylase BMD_0185 PF00491 Arginase family BMD_0187 PF04542 Sigma-70 region 2 BMD_0187 PF08281 Sigma-70, region 4 BMD_0188 PF13490 Putative zinc-finger BMD_0189 PF02457 DisA bacterial checkpoint controller nucleotide-binding BMD_0191 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BMD_0191 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BMD_0191 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BMD_0191 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BMD_0192 PF01380 SIS domain BMD_0194 PF01709 Transcriptional regulator BMD_0195 PF01476 LysM domain BMD_0195 PF00877 NlpC/P60 family BMD_0195 PF08239 Bacterial SH3 domain BMD_0196 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BMD_0196 PF02378 Phosphotransferase system, EIIC BMD_0196 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BMD_0197 PF08279 HTH domain BMD_0197 PF00874 PRD domain BMD_0197 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BMD_0197 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BMD_0197 PF05043 Mga helix-turn-helix domain BMD_0198 PF08125 Mannitol dehydrogenase C-terminal domain BMD_0198 PF01232 Mannitol dehydrogenase Rossmann domain BMD_0200 PF03734 L,D-transpeptidase catalytic domain BMD_0201 PF01741 Large-conductance mechanosensitive channel, MscL BMD_0202 PF00884 Sulfatase BMD_0204 PF08402 TOBE domain BMD_0204 PF00005 ABC transporter BMD_0205 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0206 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0207 PF13416 Bacterial extracellular solute-binding protein BMD_0209 PF00486 Transcriptional regulatory protein, C terminal BMD_0209 PF00072 Response regulator receiver domain BMD_0210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0210 PF00512 His Kinase A (phospho-acceptor) domain BMD_0213 PF07478 D-ala D-ala ligase C-terminus BMD_0213 PF01820 D-ala D-ala ligase N-terminus BMD_0214 PF02875 Mur ligase family, glutamate ligase domain BMD_0214 PF08245 Mur ligase middle domain BMD_0214 PF01225 Mur ligase family, catalytic domain BMD_0215 PF00270 DEAD/DEAH box helicase BMD_0215 PF00271 Helicase conserved C-terminal domain BMD_0216 PF03851 UV-endonuclease UvdE BMD_0217 PF01694 Rhomboid family BMD_0218 PF01648 4'-phosphopantetheinyl transferase superfamily BMD_0220 PF00842 Alanine racemase, C-terminal domain BMD_0220 PF01168 Alanine racemase, N-terminal domain BMD_0221 PF01402 Ribbon-helix-helix protein, copG family BMD_0222 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BMD_0223 PF01740 STAS domain BMD_0223 PF08678 Rsbr N terminal BMD_0224 PF01740 STAS domain BMD_0225 PF13581 Histidine kinase-like ATPase domain BMD_0226 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain BMD_0226 PF07228 Stage II sporulation protein E (SpoIIE) BMD_0227 PF01740 STAS domain BMD_0228 PF13581 Histidine kinase-like ATPase domain BMD_0229 PF04545 Sigma-70, region 4 BMD_0229 PF04539 Sigma-70 region 3 BMD_0229 PF04542 Sigma-70 region 2 BMD_0230 PF07228 Stage II sporulation protein E (SpoIIE) BMD_0231 PF00575 S1 RNA binding domain BMD_0231 PF09371 Tex-like protein N-terminal domain BMD_0231 PF17674 HHH domain BMD_0231 PF16921 Tex protein YqgF-like domain BMD_0233 PF10263 SprT-like family BMD_0233 PF17283 SprT-like zinc ribbon domain BMD_0250 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BMD_0251 PF00814 Glycoprotease family BMD_0252 PF00583 Acetyltransferase (GNAT) family BMD_0253 PF00814 Glycoprotease family BMD_0254 PF12848 ABC transporter BMD_0254 PF16326 ABC transporter C-terminal domain BMD_0254 PF00005 ABC transporter BMD_0255 PF06971 Putative DNA-binding protein N-terminus BMD_0255 PF02629 CoA binding domain BMD_0256 PF02416 mttA/Hcf106 family BMD_0257 PF00902 Sec-independent protein translocase protein (TatC) BMD_0259 PF02517 CPBP intramembrane metalloprotease BMD_0260 PF00166 Chaperonin 10 Kd subunit BMD_0261 PF00118 TCP-1/cpn60 chaperonin family BMD_0262 PF07726 ATPase family associated with various cellular activities (AAA) BMD_0262 PF17863 AAA lid domain BMD_0263 PF01882 Protein of unknown function DUF58 BMD_0264 PF11992 Domain of unknown function (DUF3488) BMD_0264 PF13559 Domain of unknown function (DUF4129) BMD_0264 PF01841 Transglutaminase-like superfamily BMD_0265 PF00958 GMP synthase C terminal domain BMD_0265 PF02540 NAD synthase BMD_0265 PF00117 Glutamine amidotransferase class-I BMD_0266 PF00860 Permease family BMD_0270 PF14044 NETI protein BMD_0271 PF00731 AIR carboxylase BMD_0272 PF02222 ATP-grasp domain BMD_0272 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BMD_0273 PF00206 Lyase BMD_0273 PF10397 Adenylosuccinate lyase C-terminus BMD_0274 PF01259 SAICAR synthetase BMD_0275 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BMD_0277 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BMD_0277 PF02769 AIR synthase related protein, C-terminal domain BMD_0277 PF00586 AIR synthase related protein, N-terminal domain BMD_0278 PF00156 Phosphoribosyl transferase domain BMD_0279 PF02769 AIR synthase related protein, C-terminal domain BMD_0279 PF00586 AIR synthase related protein, N-terminal domain BMD_0280 PF00551 Formyl transferase BMD_0281 PF02142 MGS-like domain BMD_0281 PF01808 AICARFT/IMPCHase bienzyme BMD_0282 PF02844 Phosphoribosylglycinamide synthetase, N domain BMD_0282 PF02843 Phosphoribosylglycinamide synthetase, C domain BMD_0282 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BMD_0284 PF13382 Adenine deaminase C-terminal domain BMD_0284 PF01979 Amidohydrolase family BMD_0285 PF01371 Trp repressor protein BMD_0286 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BMD_0286 PF03129 Anticodon binding domain BMD_0287 PF01884 PcrB family BMD_0288 PF00580 UvrD/REP helicase N-terminal domain BMD_0288 PF13361 UvrD-like helicase C-terminal domain BMD_0289 PF12826 Helix-hairpin-helix motif BMD_0289 PF03120 NAD-dependent DNA ligase OB-fold domain BMD_0289 PF01653 NAD-dependent DNA ligase adenylation domain BMD_0289 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BMD_0289 PF00533 BRCA1 C Terminus (BRCT) domain BMD_0290 PF07537 CamS sex pheromone cAM373 precursor BMD_0292 PF02686 Glu-tRNAGln amidotransferase C subunit BMD_0293 PF01425 Amidase BMD_0294 PF02637 GatB domain BMD_0294 PF02934 GatB/GatE catalytic domain BMD_0295 PF00781 Diacylglycerol kinase catalytic domain BMD_0296 PF01938 TRAM domain BMD_0296 PF05958 tRNA (Uracil-5-)-methyltransferase BMD_0296 PF02475 Met-10+ like-protein BMD_0297 PF00082 Subtilase family BMD_0299 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_0299 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_0301 PF12728 Helix-turn-helix domain BMD_0302 PF02608 ABC transporter substrate-binding protein PnrA-like BMD_0303 PF00512 His Kinase A (phospho-acceptor) domain BMD_0303 PF00989 PAS fold BMD_0303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0304 PF00557 Metallopeptidase family M24 BMD_0305 PF10282 Lactonase, 7-bladed beta-propeller BMD_0306 PF03060 Nitronate monooxygenase BMD_0307 PF06445 GyrI-like small molecule binding domain BMD_0307 PF13411 MerR HTH family regulatory protein BMD_0308 PF07690 Major Facilitator Superfamily BMD_0310 PF13539 D-alanyl-D-alanine carboxypeptidase BMD_0311 PF00005 ABC transporter BMD_0312 PF00497 Bacterial extracellular solute-binding proteins, family 3 BMD_0313 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0314 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0315 PF00324 Amino acid permease BMD_0316 PF04286 Protein of unknown function (DUF445) BMD_0317 PF03413 Peptidase propeptide and YPEB domain BMD_0319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0319 PF00512 His Kinase A (phospho-acceptor) domain BMD_0319 PF00672 HAMP domain BMD_0320 PF00072 Response regulator receiver domain BMD_0320 PF00486 Transcriptional regulatory protein, C terminal BMD_0321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0321 PF00512 His Kinase A (phospho-acceptor) domain BMD_0322 PF00486 Transcriptional regulatory protein, C terminal BMD_0322 PF00072 Response regulator receiver domain BMD_0323 PF04235 Protein of unknown function (DUF418) BMD_0325 PF00005 ABC transporter BMD_0326 PF01569 PAP2 superfamily BMD_0327 PF02566 OsmC-like protein BMD_0328 PF03824 High-affinity nickel-transport protein BMD_0329 PF01546 Peptidase family M20/M25/M40 BMD_0329 PF07687 Peptidase dimerisation domain BMD_0330 PF07681 DoxX BMD_0331 PF01965 DJ-1/PfpI family BMD_0333 PF12867 DinB superfamily BMD_0335 PF01235 Sodium:alanine symporter family BMD_0336 PF06081 Aromatic acid exporter family member 1 BMD_0338 PF02915 Rubrerythrin BMD_0339 PF01544 CorA-like Mg2+ transporter protein BMD_0340 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BMD_0340 PF17203 Single cache domain 3 BMD_0340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0340 PF00989 PAS fold BMD_0341 PF00072 Response regulator receiver domain BMD_0344 PF08447 PAS fold BMD_0344 PF00989 PAS fold BMD_0344 PF00512 His Kinase A (phospho-acceptor) domain BMD_0344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0345 PF00271 Helicase conserved C-terminal domain BMD_0345 PF00270 DEAD/DEAH box helicase BMD_0347 PF14436 Bacterial EndoU nuclease BMD_0347 PF04740 LXG domain of WXG superfamily BMD_0349 PF06013 Proteins of 100 residues with WXG BMD_0350 PF08817 WXG100 protein secretion system (Wss), protein YukD BMD_0351 PF10140 WXG100 protein secretion system (Wss), protein YukC BMD_0352 PF01580 FtsK/SpoIIIE family BMD_0352 PF12538 DNA transporter BMD_0354 PF17355 Family of unknown function (DUF5383) BMD_0356 PF04231 Endonuclease I BMD_0357 PF00686 Starch binding domain BMD_0357 PF01373 Glycosyl hydrolase family 14 BMD_0358 PF01625 Peptide methionine sulfoxide reductase BMD_0361 PF00005 ABC transporter BMD_0361 PF12848 ABC transporter BMD_0362 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BMD_0363 PF02898 Nitric oxide synthase, oxygenase domain BMD_0364 PF11121 Protein of unknown function (DUF2639) BMD_0365 PF02082 Transcriptional regulator BMD_0366 PF00042 Globin BMD_0366 PF00970 Oxidoreductase FAD-binding domain BMD_0366 PF00175 Oxidoreductase NAD-binding domain BMD_0367 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BMD_0368 PF01965 DJ-1/PfpI family BMD_0369 PF00188 Cysteine-rich secretory protein family BMD_0370 PF13382 Adenine deaminase C-terminal domain BMD_0370 PF01979 Amidohydrolase family BMD_0371 PF06569 Protein of unknown function (DUF1128) BMD_0372 PF01451 Low molecular weight phosphotyrosine protein phosphatase BMD_0374 PF03631 Virulence factor BrkB BMD_0377 PF01022 Bacterial regulatory protein, arsR family BMD_0378 PF16916 Dimerisation domain of Zinc Transporter BMD_0378 PF01545 Cation efflux family BMD_0379 PF07690 Major Facilitator Superfamily BMD_0380 PF05870 Phenolic acid decarboxylase (PAD) BMD_0382 PF16242 Pyridoxamine 5'-phosphate oxidase like BMD_0383 PF01699 Sodium/calcium exchanger protein BMD_0384 PF14167 YfkD-like protein BMD_0385 PF08756 YfkB-like domain BMD_0385 PF04055 Radical SAM superfamily BMD_0387 PF05681 Fumarate hydratase (Fumerase) BMD_0387 PF05683 Fumarase C-terminus BMD_0388 PF01522 Polysaccharide deacetylase BMD_0389 PF05958 tRNA (Uracil-5-)-methyltransferase BMD_0389 PF01938 TRAM domain BMD_0391 PF00324 Amino acid permease BMD_0392 PF13188 PAS domain BMD_0392 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0392 PF13426 PAS domain BMD_0392 PF00512 His Kinase A (phospho-acceptor) domain BMD_0392 PF00989 PAS fold BMD_0395 PF01979 Amidohydrolase family BMD_0396 PF08338 Domain of unknown function (DUF1731) BMD_0396 PF01370 NAD dependent epimerase/dehydratase family BMD_0397 PF02631 RecX family BMD_0398 PF00106 short chain dehydrogenase BMD_0399 PF08838 Protein of unknown function (DUF1811) BMD_0400 PF08176 Small acid-soluble spore protein K family BMD_0402 PF04307 LexA-binding, inner membrane-associated putative hydrolase BMD_0403 PF00730 HhH-GPD superfamily base excision DNA repair protein BMD_0403 PF14815 NUDIX domain BMD_0406 PF04259 Small, acid-soluble spore protein, gamma-type BMD_0407 PF14182 YgaB-like protein BMD_0408 PF04167 Protein of unknown function (DUF402) BMD_0409 PF00005 ABC transporter BMD_0409 PF00664 ABC transporter transmembrane region BMD_0410 PF06081 Aromatic acid exporter family member 1 BMD_0411 PF00202 Aminotransferase class-III BMD_0412 PF00005 ABC transporter BMD_0415 PF07885 Ion channel BMD_0416 PF00578 AhpC/TSA family BMD_0417 PF01475 Ferric uptake regulator family BMD_0418 PF11023 Zinc-ribbon containing domain BMD_0419 PF18576 Helix-turn-helix domain BMD_0419 PF14540 Nucleotidyltransferase-like BMD_0441 PF08331 Domain of unknown function (DUF1730) BMD_0442 PF12671 Putative amidase domain BMD_0443 PF00588 SpoU rRNA Methylase family BMD_0444 PF06798 PrkA serine protein kinase C-terminal domain BMD_0444 PF08298 PrkA AAA domain BMD_0445 PF04285 Protein of unknown function (DUF444) BMD_0448 PF01545 Cation efflux family BMD_0448 PF16916 Dimerisation domain of Zinc Transporter BMD_0450 PF01964 Radical SAM ThiC family BMD_0450 PF13667 ThiC-associated domain BMD_0452 PF02673 Bacitracin resistance protein BacA BMD_0453 PF00375 Sodium:dicarboxylate symporter family BMD_0455 PF09335 SNARE associated Golgi protein BMD_0456 PF12787 EcsC protein family BMD_0457 PF00324 Amino acid permease BMD_0459 PF16875 Glycosyl hydrolase family 36 N-terminal domain BMD_0459 PF16874 Glycosyl hydrolase family 36 C-terminal domain BMD_0461 PF04309 Glycerol-3-phosphate responsive antiterminator BMD_0463 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0464 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0465 PF13416 Bacterial extracellular solute-binding protein BMD_0466 PF03009 Glycerophosphoryl diester phosphodiesterase family BMD_0469 PF13378 Enolase C-terminal domain-like BMD_0469 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BMD_0470 PF00877 NlpC/P60 family BMD_0470 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain BMD_0477 PF10503 Esterase PHB depolymerase BMD_0478 PF03990 G5-linked-Ubiquitin-like domain BMD_0478 PF07501 G5 domain BMD_0478 PF06725 3D domain BMD_0479 PF02557 D-alanyl-D-alanine carboxypeptidase BMD_0481 PF08239 Bacterial SH3 domain BMD_0483 PF00583 Acetyltransferase (GNAT) family BMD_0484 PF13396 Phospholipase_D-nuclease N-terminal BMD_0484 PF13091 PLD-like domain BMD_0487 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_0489 PF00356 Bacterial regulatory proteins, lacI family BMD_0490 PF07690 Major Facilitator Superfamily BMD_0491 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_0491 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_0492 PF00294 pfkB family carbohydrate kinase BMD_0493 PF00171 Aldehyde dehydrogenase family BMD_0494 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_0494 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_0494 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_0495 PF01261 Xylose isomerase-like TIM barrel BMD_0496 PF00356 Bacterial regulatory proteins, lacI family BMD_0497 PF04962 KduI/IolB family BMD_0500 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_0500 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_0501 PF01037 Lrp/AsnC ligand binding domain BMD_0505 PF07690 Major Facilitator Superfamily BMD_0506 PF00440 Bacterial regulatory proteins, tetR family BMD_0507 PF00849 RNA pseudouridylate synthase BMD_0507 PF01479 S4 domain BMD_0510 PF14552 Tautomerase enzyme BMD_0511 PF00091 Tubulin/FtsZ family, GTPase domain BMD_0511 PF12327 FtsZ family, C-terminal domain BMD_0512 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_0514 PF03600 Citrate transporter BMD_0515 PF10787 Uncharacterised protein from bacillus cereus group BMD_0517 PF01026 TatD related DNase BMD_0519 PF01594 AI-2E family transporter BMD_0522 PF00107 Zinc-binding dehydrogenase BMD_0522 PF08240 Alcohol dehydrogenase GroES-like domain BMD_0523 PF02652 L-lactate permease BMD_0524 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BMD_0524 PF00056 lactate/malate dehydrogenase, NAD binding domain BMD_0525 PF01545 Cation efflux family BMD_0525 PF16916 Dimerisation domain of Zinc Transporter BMD_0526 PF02743 Cache domain BMD_0526 PF00672 HAMP domain BMD_0526 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BMD_0527 PF01479 S4 domain BMD_0527 PF00849 RNA pseudouridylate synthase BMD_0530 PF03734 L,D-transpeptidase catalytic domain BMD_0530 PF17969 L,D-transpeptidase C-terminal domain BMD_0531 PF00795 Carbon-nitrogen hydrolase BMD_0531 PF00583 Acetyltransferase (GNAT) family BMD_0532 PF04309 Glycerol-3-phosphate responsive antiterminator BMD_0533 PF00230 Major intrinsic protein BMD_0534 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BMD_0534 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BMD_0535 PF01266 FAD dependent oxidoreductase BMD_0535 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BMD_0536 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BMD_0536 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BMD_0536 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BMD_0536 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BMD_0537 PF02632 BioY family BMD_0538 PF14148 YhdB-like protein BMD_0540 PF04293 SpoVR like protein BMD_0542 PF02082 Transcriptional regulator BMD_0543 PF08240 Alcohol dehydrogenase GroES-like domain BMD_0543 PF00107 Zinc-binding dehydrogenase BMD_0545 PF00005 ABC transporter BMD_0546 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0547 PF00497 Bacterial extracellular solute-binding proteins, family 3 BMD_0548 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BMD_0549 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BMD_0551 PF02581 Thiamine monophosphate synthase BMD_0552 PF01266 FAD dependent oxidoreductase BMD_0554 PF05690 Thiazole biosynthesis protein ThiG BMD_0555 PF00899 ThiF family BMD_0556 PF08543 Phosphomethylpyrimidine kinase BMD_0557 PF00300 Histidine phosphatase superfamily (branch 1) BMD_0559 PF13460 NAD(P)H-binding BMD_0560 PF00571 CBS domain BMD_0560 PF01595 Cyclin M transmembrane N-terminal domain BMD_0560 PF03471 Transporter associated domain BMD_0561 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_0563 PF03459 TOBE domain BMD_0563 PF17912 MalK OB fold domain BMD_0563 PF00005 ABC transporter BMD_0564 PF13556 PucR C-terminal helix-turn-helix domain BMD_0567 PF14398 YheC/D like ATP-grasp BMD_0568 PF14398 YheC/D like ATP-grasp BMD_0570 PF06133 Control of competence regulator ComK, YlbF/YmcA BMD_0573 PF04055 Radical SAM superfamily BMD_0574 PF13193 AMP-binding enzyme C-terminal domain BMD_0574 PF00501 AMP-binding enzyme BMD_0575 PF00378 Enoyl-CoA hydratase/isomerase BMD_0576 PF00216 Bacterial DNA-binding protein BMD_0578 PF13732 Domain of unknown function (DUF4162) BMD_0578 PF00005 ABC transporter BMD_0580 PF01966 HD domain BMD_0580 PF01336 OB-fold nucleic acid binding domain BMD_0581 PF14147 Sporulation protein YhaL BMD_0582 PF05698 Bacterial trigger factor protein (TF) C-terminus BMD_0585 PF01047 MarR family BMD_0587 PF17099 Tryptophan transporter TrpP BMD_0588 PF00266 Aminotransferase class-V BMD_0589 PF03551 Transcriptional regulator PadR-like family BMD_0589 PF10400 Virulence activator alpha C-term BMD_0590 PF13673 Acetyltransferase (GNAT) domain BMD_0591 PF01757 Acyltransferase family BMD_0592 PF01230 HIT domain BMD_0593 PF00005 ABC transporter BMD_0594 PF05975 Bacterial ABC transporter protein EcsB BMD_0595 PF12787 EcsC protein family BMD_0596 PF07687 Peptidase dimerisation domain BMD_0596 PF01546 Peptidase family M20/M25/M40 BMD_0597 PF01569 PAP2 superfamily BMD_0599 PF03992 Antibiotic biosynthesis monooxygenase BMD_0600 PF00905 Penicillin binding protein transpeptidase domain BMD_0600 PF00912 Transglycosylase BMD_0601 PF01208 Uroporphyrinogen decarboxylase (URO-D) BMD_0604 PF17932 Tetracyclin repressor-like, C-terminal domain BMD_0604 PF00440 Bacterial regulatory proteins, tetR family BMD_0606 PF01547 Bacterial extracellular solute-binding protein BMD_0607 PF02743 Cache domain BMD_0607 PF00672 HAMP domain BMD_0607 PF06580 Histidine kinase BMD_0607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0610 PF12706 Beta-lactamase superfamily domain BMD_0611 PF10437 Bacterial lipoate protein ligase C-terminus BMD_0611 PF03099 Biotin/lipoate A/B protein ligase family BMD_0612 PF00501 AMP-binding enzyme BMD_0612 PF13193 AMP-binding enzyme C-terminal domain BMD_0613 PF00378 Enoyl-CoA hydratase/isomerase BMD_0636 PF01435 Peptidase family M48 BMD_0636 PF16491 CAAX prenyl protease N-terminal, five membrane helices BMD_0637 PF00463 Isocitrate lyase family BMD_0638 PF08858 IDEAL domain BMD_0639 PF07676 WD40-like Beta Propeller Repeat BMD_0639 PF00326 Prolyl oligopeptidase family BMD_0640 PF09335 SNARE associated Golgi protein BMD_0642 PF12705 PD-(D/E)XK nuclease superfamily BMD_0643 PF12705 PD-(D/E)XK nuclease superfamily BMD_0643 PF00580 UvrD/REP helicase N-terminal domain BMD_0643 PF13361 UvrD-like helicase C-terminal domain BMD_0644 PF00149 Calcineurin-like phosphoesterase BMD_0644 PF12320 Type 5 capsule protein repressor C-terminal domain BMD_0645 PF13476 AAA domain BMD_0647 PF10676 Spore germination protein gerPA/gerPF BMD_0650 PF10737 Spore germination protein GerPC BMD_0651 PF10803 Spore germination GerPB BMD_0652 PF10676 Spore germination protein gerPA/gerPF BMD_0653 PF04235 Protein of unknown function (DUF418) BMD_0654 PF07457 Protein of unknown function (DUF1516) BMD_0656 PF13537 Glutamine amidotransferase domain BMD_0656 PF00733 Asparagine synthase BMD_0657 PF01593 Flavin containing amine oxidoreductase BMD_0660 PF00128 Alpha amylase, catalytic domain BMD_0660 PF03423 Carbohydrate binding domain (family 25) BMD_0660 PF01373 Glycosyl hydrolase family 14 BMD_0661 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BMD_0661 PF00356 Bacterial regulatory proteins, lacI family BMD_0662 PF00171 Aldehyde dehydrogenase family BMD_0663 PF00202 Aminotransferase class-III BMD_0664 PF01546 Peptidase family M20/M25/M40 BMD_0665 PF00324 Amino acid permease BMD_0666 PF00158 Sigma-54 interaction domain BMD_0666 PF13426 PAS domain BMD_0666 PF02954 Bacterial regulatory protein, Fis family BMD_0668 PF04461 Protein of unknown function (DUF520) BMD_0669 PF13509 S1 domain BMD_0669 PF17783 CvfB-like winged helix domain BMD_0671 PF02645 Uncharacterised protein, DegV family COG1307 BMD_0672 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_0672 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_0676 PF01883 Iron-sulfur cluster assembly protein BMD_0677 PF00027 Cyclic nucleotide-binding domain BMD_0677 PF00325 Bacterial regulatory proteins, crp family BMD_0678 PF02774 Semialdehyde dehydrogenase, dimerisation domain BMD_0678 PF01118 Semialdehyde dehydrogenase, NAD binding domain BMD_0679 PF01960 ArgJ family BMD_0680 PF00696 Amino acid kinase family BMD_0681 PF00202 Aminotransferase class-III BMD_0682 PF00117 Glutamine amidotransferase class-I BMD_0682 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BMD_0683 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BMD_0683 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BMD_0684 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BMD_0684 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BMD_0686 PF14168 YjzC-like protein BMD_0687 PF17871 AAA lid domain BMD_0687 PF00004 ATPase family associated with various cellular activities (AAA) BMD_0687 PF07724 AAA domain (Cdc48 subfamily) BMD_0687 PF10431 C-terminal, D2-small domain, of ClpB protein BMD_0687 PF02861 Clp amino terminal domain, pathogenicity island component BMD_0688 PF12833 Helix-turn-helix domain BMD_0689 PF00288 GHMP kinases N terminal domain BMD_0689 PF10509 Galactokinase galactose-binding signature BMD_0689 PF08544 GHMP kinases C terminal BMD_0690 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BMD_0690 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BMD_0691 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BMD_0691 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BMD_0695 PF10815 ComZ BMD_0696 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BMD_0696 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BMD_0697 PF00109 Beta-ketoacyl synthase, N-terminal domain BMD_0697 PF02801 Beta-ketoacyl synthase, C-terminal domain BMD_0698 PF10026 Predicted Zn-dependent protease (DUF2268) BMD_0699 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_0699 PF00005 ABC transporter BMD_0700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_0700 PF00005 ABC transporter BMD_0701 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_0702 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0703 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0704 PF12227 Protein of unknown function (DUF3603) BMD_0705 PF00579 tRNA synthetases class I (W and Y) BMD_0706 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_0707 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0708 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0708 PF12911 N-terminal TM domain of oligopeptide transport permease C BMD_0710 PF00005 ABC transporter BMD_0710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_0711 PF13508 Acetyltransferase (GNAT) domain BMD_0712 PF00324 Amino acid permease BMD_0713 PF13520 Amino acid permease BMD_0714 PF03960 ArsC family BMD_0715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_0715 PF03466 LysR substrate binding domain BMD_0718 PF03741 Integral membrane protein TerC family BMD_0719 PF05389 Negative regulator of genetic competence (MecA) BMD_0720 PF13091 PLD-like domain BMD_0720 PF13396 Phospholipase_D-nuclease N-terminal BMD_0722 PF01432 Peptidase family M3 BMD_0722 PF08439 Oligopeptidase F BMD_0725 PF01152 Bacterial-like globin BMD_0726 PF01464 Transglycosylase SLT domain BMD_0727 PF01928 CYTH domain BMD_0729 PF04607 Region found in RelA / SpoT proteins BMD_0730 PF01513 ATP-NAD kinase BMD_0731 PF00849 RNA pseudouridylate synthase BMD_0732 PF00149 Calcineurin-like phosphoesterase BMD_0733 PF03448 MgtE intracellular N domain BMD_0733 PF00571 CBS domain BMD_0733 PF01769 Divalent cation transporter BMD_0734 PF02254 TrkA-N domain BMD_0734 PF00999 Sodium/hydrogen exchanger family BMD_0734 PF02080 TrkA-C domain BMD_0736 PF07098 Protein of unknown function (DUF1360) BMD_0741 PF14069 Stage VI sporulation protein F BMD_0743 PF13361 UvrD-like helicase C-terminal domain BMD_0743 PF00580 UvrD/REP helicase N-terminal domain BMD_0745 PF04239 Protein of unknown function (DUF421) BMD_0746 PF13673 Acetyltransferase (GNAT) domain BMD_0748 PF00756 Putative esterase BMD_0750 PF04608 Phosphatidylglycerophosphatase A BMD_0752 PF01380 SIS domain BMD_0752 PF01418 Helix-turn-helix domain, rpiR family BMD_0753 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BMD_0753 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BMD_0754 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BMD_0754 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BMD_0755 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BMD_0756 PF02447 GntP family permease BMD_0759 PF01037 Lrp/AsnC ligand binding domain BMD_0760 PF00797 N-acetyltransferase BMD_0761 PF01323 DSBA-like thioredoxin domain BMD_0763 PF00271 Helicase conserved C-terminal domain BMD_0763 PF03880 DbpA RNA binding domain BMD_0763 PF00270 DEAD/DEAH box helicase BMD_0764 PF03932 CutC family BMD_0765 PF00324 Amino acid permease BMD_0767 PF00753 Metallo-beta-lactamase superfamily BMD_0768 PF00440 Bacterial regulatory proteins, tetR family BMD_0768 PF13305 Tetracyclin repressor-like, C-terminal domain BMD_0769 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BMD_0769 PF00874 PRD domain BMD_0769 PF05043 Mga helix-turn-helix domain BMD_0769 PF08279 HTH domain BMD_0770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BMD_0771 PF02378 Phosphotransferase system, EIIC BMD_0772 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BMD_0773 PF02056 Family 4 glycosyl hydrolase BMD_0773 PF11975 Family 4 glycosyl hydrolase C-terminal domain BMD_0774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0774 PF13492 GAF domain BMD_0774 PF07694 5TMR of 5TMR-LYT BMD_0774 PF06580 Histidine kinase BMD_0775 PF04397 LytTr DNA-binding domain BMD_0775 PF00072 Response regulator receiver domain BMD_0776 PF03788 LrgA family BMD_0777 PF04172 LrgB-like family BMD_0778 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BMD_0778 PF04324 BFD-like [2Fe-2S] binding domain BMD_0778 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BMD_0778 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_0778 PF18267 Rubredoxin NAD+ reductase C-terminal domain BMD_0779 PF01568 Molydopterin dinucleotide binding domain BMD_0779 PF00384 Molybdopterin oxidoreductase BMD_0779 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BMD_0780 PF07690 Major Facilitator Superfamily BMD_0781 PF17284 Spermidine synthase tetramerisation domain BMD_0784 PF02875 Mur ligase family, glutamate ligase domain BMD_0784 PF01225 Mur ligase family, catalytic domain BMD_0784 PF08245 Mur ligase middle domain BMD_0786 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_0786 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_0788 PF13344 Haloacid dehalogenase-like hydrolase BMD_0788 PF00293 NUDIX domain BMD_0789 PF03306 Alpha-acetolactate decarboxylase BMD_0790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_0790 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_0790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_0791 PF09962 Uncharacterized conserved protein (DUF2196) BMD_0793 PF01638 HxlR-like helix-turn-helix BMD_0794 PF07690 Major Facilitator Superfamily BMD_0795 PF00296 Luciferase-like monooxygenase BMD_0796 PF00698 Acyl transferase domain BMD_0797 PF16957 Malonate decarboxylase, alpha subunit, transporter BMD_0798 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BMD_0799 PF06857 Malonate decarboxylase delta subunit (MdcD) BMD_0800 PF01039 Carboxyl transferase domain BMD_0801 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BMD_0802 PF00072 Response regulator receiver domain BMD_0802 PF08664 YcbB domain BMD_0803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0804 PF04960 Glutaminase BMD_0805 PF01235 Sodium:alanine symporter family BMD_0806 PF00474 Sodium:solute symporter family BMD_0809 PF13520 Amino acid permease BMD_0811 PF03061 Thioesterase superfamily BMD_0812 PF00311 Phosphoenolpyruvate carboxylase BMD_0814 PF00355 Rieske [2Fe-2S] domain BMD_0815 PF03649 Uncharacterised protein family (UPF0014) BMD_0816 PF00005 ABC transporter BMD_0817 PF01053 Cys/Met metabolism PLP-dependent enzyme BMD_0818 PF04893 Yip1 domain BMD_0819 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BMD_0820 PF00005 ABC transporter BMD_0821 PF02687 FtsX-like permease family BMD_0821 PF12704 MacB-like periplasmic core domain BMD_0823 PF00809 Pterin binding enzyme BMD_0826 PF07662 Na+ dependent nucleoside transporter C-terminus BMD_0826 PF01773 Na+ dependent nucleoside transporter N-terminus BMD_0827 PF00324 Amino acid permease BMD_0828 PF02632 BioY family BMD_0830 PF00202 Aminotransferase class-III BMD_0832 PF03741 Integral membrane protein TerC family BMD_0833 PF00375 Sodium:dicarboxylate symporter family BMD_0834 PF03480 Bacterial extracellular solute-binding protein, family 7 BMD_0835 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BMD_0835 PF17203 Single cache domain 3 BMD_0835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0836 PF04703 FaeA-like protein BMD_0836 PF00072 Response regulator receiver domain BMD_0837 PF06800 Sugar transport protein BMD_0843 PF01381 Helix-turn-helix BMD_0845 PF00884 Sulfatase BMD_0848 PF00155 Aminotransferase class I and II BMD_0848 PF00392 Bacterial regulatory proteins, gntR family BMD_0849 PF02574 Homocysteine S-methyltransferase BMD_0850 PF01557 Fumarylacetoacetate (FAA) hydrolase family BMD_0852 PF03600 Citrate transporter BMD_0853 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BMD_0853 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0854 PF08279 HTH domain BMD_0854 PF00072 Response regulator receiver domain BMD_0854 PF12431 Transcriptional regulator BMD_0855 PF03401 Tripartite tricarboxylate transporter family receptor BMD_0856 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_0856 PF03466 LysR substrate binding domain BMD_0857 PF05145 Transition state regulatory protein AbrB BMD_0858 PF08241 Methyltransferase domain BMD_0859 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0860 PF00571 CBS domain BMD_0860 PF00005 ABC transporter BMD_0861 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BMD_0862 PF17934 Tetracyclin repressor-like, C-terminal domain BMD_0862 PF00440 Bacterial regulatory proteins, tetR family BMD_0864 PF00202 Aminotransferase class-III BMD_0865 PF00491 Arginase family BMD_0866 PF00324 Amino acid permease BMD_0867 PF13419 Haloacid dehalogenase-like hydrolase BMD_0868 PF00296 Luciferase-like monooxygenase BMD_0869 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BMD_0869 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_0870 PF00296 Luciferase-like monooxygenase BMD_0871 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BMD_0871 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_0872 PF01497 Periplasmic binding protein BMD_0873 PF01032 FecCD transport family BMD_0874 PF01032 FecCD transport family BMD_0877 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BMD_0877 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BMD_0877 PF06827 Zinc finger found in FPG and IleRS BMD_0880 PF01380 SIS domain BMD_0881 PF01418 Helix-turn-helix domain, rpiR family BMD_0881 PF01380 SIS domain BMD_0882 PF02378 Phosphotransferase system, EIIC BMD_0882 PF00367 phosphotransferase system, EIIB BMD_0884 PF01546 Peptidase family M20/M25/M40 BMD_0884 PF07687 Peptidase dimerisation domain BMD_0885 PF03070 TENA/THI-4/PQQC family BMD_0886 PF00005 ABC transporter BMD_0887 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0888 PF09084 NMT1/THI5 like BMD_0890 PF01380 SIS domain BMD_0891 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BMD_0892 PF01638 HxlR-like helix-turn-helix BMD_0896 PF02421 Ferrous iron transport protein B BMD_0896 PF17910 FeoB cytosolic helical domain BMD_0896 PF07664 Ferrous iron transport protein B C terminus BMD_0896 PF07670 Nucleoside recognition BMD_0900 PF00398 Ribosomal RNA adenine dimethylase BMD_0901 PF04963 Sigma-54 factor, core binding domain BMD_0901 PF04552 Sigma-54, DNA binding domain BMD_0901 PF00309 Sigma-54 factor, Activator interacting domain (AID) BMD_0902 PF01638 HxlR-like helix-turn-helix BMD_0905 PF00664 ABC transporter transmembrane region BMD_0905 PF00005 ABC transporter BMD_0906 PF00005 ABC transporter BMD_0906 PF00664 ABC transporter transmembrane region BMD_0908 PF00474 Sodium:solute symporter family BMD_0909 PF04341 Protein of unknown function, DUF485 BMD_0911 PF09339 IclR helix-turn-helix domain BMD_0911 PF01614 Bacterial transcriptional regulator BMD_0912 PF00248 Aldo/keto reductase family BMD_0913 PF00106 short chain dehydrogenase BMD_0915 PF01047 MarR family BMD_0917 PF07690 Major Facilitator Superfamily BMD_0918 PF03358 NADPH-dependent FMN reductase BMD_0921 PF00356 Bacterial regulatory proteins, lacI family BMD_0922 PF00294 pfkB family carbohydrate kinase BMD_0923 PF05025 RbsD / FucU transport protein family BMD_0924 PF00005 ABC transporter BMD_0925 PF02653 Branched-chain amino acid transport system / permease component BMD_0926 PF13407 Periplasmic binding protein domain BMD_0927 PF06725 3D domain BMD_0927 PF03990 G5-linked-Ubiquitin-like domain BMD_0927 PF07501 G5 domain BMD_0928 PF01613 Flavin reductase like domain BMD_0930 PF01547 Bacterial extracellular solute-binding protein BMD_0931 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0932 PF00528 Binding-protein-dependent transport system inner membrane component BMD_0935 PF00072 Response regulator receiver domain BMD_0935 PF00990 Diguanylate cyclase, GGDEF domain BMD_0937 PF00535 Glycosyl transferase family 2 BMD_0940 PF00486 Transcriptional regulatory protein, C terminal BMD_0940 PF00072 Response regulator receiver domain BMD_0941 PF13426 PAS domain BMD_0941 PF00512 His Kinase A (phospho-acceptor) domain BMD_0941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_0941 PF00672 HAMP domain BMD_0942 PF09350 Domain of unknown function (DUF1992) BMD_0944 PF00300 Histidine phosphatase superfamily (branch 1) BMD_0948 PF01979 Amidohydrolase family BMD_0949 PF00860 Permease family BMD_0952 PF01202 Shikimate kinase BMD_0953 PF00171 Aldehyde dehydrogenase family BMD_0954 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_0954 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_0954 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_0955 PF01487 Type I 3-dehydroquinase BMD_0956 PF13113 Protein of unknown function (DUF3970) BMD_0957 PF02378 Phosphotransferase system, EIIC BMD_0957 PF00367 phosphotransferase system, EIIB BMD_0958 PF00128 Alpha amylase, catalytic domain BMD_0958 PF16657 Maltogenic Amylase, C-terminal domain BMD_0959 PF07702 UTRA domain BMD_0959 PF00392 Bacterial regulatory proteins, gntR family BMD_0960 PF02682 Carboxyltransferase domain, subdomain C and D BMD_0961 PF02626 Carboxyltransferase domain, subdomain A and B BMD_0962 PF03746 LamB/YcsF family BMD_0963 PF01566 Natural resistance-associated macrophage protein BMD_0964 PF03006 Haemolysin-III related BMD_0969 PF00881 Nitroreductase family BMD_0970 PF01594 AI-2E family transporter BMD_0972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_0972 PF03466 LysR substrate binding domain BMD_0973 PF00107 Zinc-binding dehydrogenase BMD_0973 PF08240 Alcohol dehydrogenase GroES-like domain BMD_0975 PF08501 Shikimate dehydrogenase substrate binding domain BMD_0975 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BMD_0976 PF07690 Major Facilitator Superfamily BMD_0977 PF02515 CoA-transferase family III BMD_0978 PF00682 HMGL-like BMD_0979 PF00171 Aldehyde dehydrogenase family BMD_0981 PF01425 Amidase BMD_0982 PF02785 Biotin carboxylase C-terminal domain BMD_0982 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BMD_0982 PF00289 Biotin carboxylase, N-terminal domain BMD_0985 PF00324 Amino acid permease BMD_0986 PF07969 Amidohydrolase family BMD_0987 PF00313 'Cold-shock' DNA-binding domain BMD_0988 PF13460 NAD(P)H-binding BMD_0989 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_0989 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_0990 PF10417 C-terminal domain of 1-Cys peroxiredoxin BMD_0990 PF00578 AhpC/TSA family BMD_0991 PF00578 AhpC/TSA family BMD_0996 PF00360 Phytochrome region BMD_0996 PF00563 EAL domain BMD_0996 PF00990 Diguanylate cyclase, GGDEF domain BMD_0996 PF01590 GAF domain BMD_0997 PF02416 mttA/Hcf106 family BMD_0998 PF00893 Small Multidrug Resistance protein BMD_0999 PF00893 Small Multidrug Resistance protein BMD_1003 PF08245 Mur ligase middle domain BMD_1004 PF14102 Capsule biosynthesis CapC BMD_1005 PF09587 Bacterial capsule synthesis protein PGA_cap BMD_1012 PF13419 Haloacid dehalogenase-like hydrolase BMD_1015 PF02638 Glycosyl hydrolase-like 10 BMD_1016 PF01380 SIS domain BMD_1016 PF01418 Helix-turn-helix domain, rpiR family BMD_1018 PF02378 Phosphotransferase system, EIIC BMD_1020 PF11975 Family 4 glycosyl hydrolase C-terminal domain BMD_1020 PF02056 Family 4 glycosyl hydrolase BMD_1021 PF03702 Anhydro-N-acetylmuramic acid kinase BMD_1022 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BMD_1024 PF01869 BadF/BadG/BcrA/BcrD ATPase family BMD_1025 PF13580 SIS domain BMD_1026 PF13580 SIS domain BMD_1027 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BMD_1029 PF03611 PTS system sugar-specific permease component BMD_1030 PF00795 Carbon-nitrogen hydrolase BMD_1030 PF02540 NAD synthase BMD_1032 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BMD_1035 PF01476 LysM domain BMD_1035 PF03734 L,D-transpeptidase catalytic domain BMD_1037 PF13649 Methyltransferase domain BMD_1038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1038 PF03466 LysR substrate binding domain BMD_1041 PF00248 Aldo/keto reductase family BMD_1044 PF01425 Amidase BMD_1046 PF16363 GDP-mannose 4,6 dehydratase BMD_1050 PF12792 CSS motif domain associated with EAL BMD_1050 PF00563 EAL domain BMD_1051 PF00990 Diguanylate cyclase, GGDEF domain BMD_1051 PF03707 Bacterial signalling protein N terminal repeat BMD_1051 PF00563 EAL domain BMD_1052 PF01638 HxlR-like helix-turn-helix BMD_1053 PF06800 Sugar transport protein BMD_1055 PF01758 Sodium Bile acid symporter family BMD_1056 PF11755 Protein of unknown function (DUF3311) BMD_1057 PF00474 Sodium:solute symporter family BMD_1060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1061 PF00072 Response regulator receiver domain BMD_1061 PF08664 YcbB domain BMD_1062 PF00375 Sodium:dicarboxylate symporter family BMD_1065 PF00877 NlpC/P60 family BMD_1065 PF01476 LysM domain BMD_1067 PF08486 Stage II sporulation protein BMD_1068 PF00248 Aldo/keto reductase family BMD_1070 PF08858 IDEAL domain BMD_1070 PF08864 UPF0302 domain BMD_1071 PF02040 Arsenical pump membrane protein BMD_1072 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BMD_1072 PF13378 Enolase C-terminal domain-like BMD_1075 PF00158 Sigma-54 interaction domain BMD_1078 PF07690 Major Facilitator Superfamily BMD_1080 PF00873 AcrB/AcrD/AcrF family BMD_1082 PF01022 Bacterial regulatory protein, arsR family BMD_1083 PF13630 SdpI/YhfL protein family BMD_1083 PF07853 Protein of unknown function (DUF1648) BMD_1088 PF00563 EAL domain BMD_1088 PF03707 Bacterial signalling protein N terminal repeat BMD_1088 PF00990 Diguanylate cyclase, GGDEF domain BMD_1089 PF01227 GTP cyclohydrolase I BMD_1090 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_1090 PF13192 Thioredoxin domain BMD_1092 PF08245 Mur ligase middle domain BMD_1093 PF14102 Capsule biosynthesis CapC BMD_1094 PF09587 Bacterial capsule synthesis protein PGA_cap BMD_1098 PF00669 Bacterial flagellin N-terminal helical region BMD_1098 PF00700 Bacterial flagellin C-terminal helical region BMD_1099 PF01470 Pyroglutamyl peptidase BMD_1106 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BMD_1106 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BMD_1106 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BMD_1106 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BMD_1108 PF01381 Helix-turn-helix BMD_1108 PF08671 Anti-repressor SinI BMD_1110 PF00005 ABC transporter BMD_1110 PF00664 ABC transporter transmembrane region BMD_1114 PF00483 Nucleotidyl transferase BMD_1115 PF02397 Bacterial sugar transferase BMD_1117 PF00535 Glycosyl transferase family 2 BMD_1117 PF01501 Glycosyl transferase family 8 BMD_1118 PF00535 Glycosyl transferase family 2 BMD_1119 PF00534 Glycosyl transferases group 1 BMD_1119 PF13439 Glycosyltransferase Family 4 BMD_1120 PF00534 Glycosyl transferases group 1 BMD_1120 PF13439 Glycosyltransferase Family 4 BMD_1122 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BMD_1122 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BMD_1122 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BMD_1123 PF13807 G-rich domain on putative tyrosine kinase BMD_1123 PF02706 Chain length determinant protein BMD_1124 PF13614 AAA domain BMD_1126 PF00483 Nucleotidyl transferase BMD_1127 PF03816 Cell envelope-related transcriptional attenuator domain BMD_1131 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_1131 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_1131 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_1132 PF01645 Conserved region in glutamate synthase BMD_1134 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BMD_1134 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BMD_1136 PF02447 GntP family permease BMD_1140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BMD_1140 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BMD_1140 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_1140 PF18267 Rubredoxin NAD+ reductase C-terminal domain BMD_1140 PF04324 BFD-like [2Fe-2S] binding domain BMD_1141 PF00355 Rieske [2Fe-2S] domain BMD_1142 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_1143 PF01226 Formate/nitrite transporter BMD_1144 PF00294 pfkB family carbohydrate kinase BMD_1145 PF06800 Sugar transport protein BMD_1148 PF01554 MatE BMD_1150 PF03816 Cell envelope-related transcriptional attenuator domain BMD_1152 PF01544 CorA-like Mg2+ transporter protein BMD_1153 PF17936 Bacterial Ig domain BMD_1153 PF00082 Subtilase family BMD_1157 PF13580 SIS domain BMD_1159 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BMD_1160 PF01979 Amidohydrolase family BMD_1161 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BMD_1161 PF00367 phosphotransferase system, EIIB BMD_1161 PF02378 Phosphotransferase system, EIIC BMD_1162 PF04474 Protein of unknown function (DUF554) BMD_1169 PF00005 ABC transporter BMD_1170 PF00571 CBS domain BMD_1170 PF01595 Cyclin M transmembrane N-terminal domain BMD_1170 PF03471 Transporter associated domain BMD_1171 PF13411 MerR HTH family regulatory protein BMD_1173 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_1174 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BMD_1177 PF10502 Signal peptidase, peptidase S26 BMD_1187 PF01546 Peptidase family M20/M25/M40 BMD_1190 PF04229 GrpB protein BMD_1190 PF13673 Acetyltransferase (GNAT) domain BMD_1191 PF07690 Major Facilitator Superfamily BMD_1193 PF00860 Permease family BMD_1195 PF00072 Response regulator receiver domain BMD_1195 PF04397 LytTr DNA-binding domain BMD_1196 PF00005 ABC transporter BMD_1197 PF12679 ABC-2 family transporter protein BMD_1198 PF01636 Phosphotransferase enzyme family BMD_1199 PF13411 MerR HTH family regulatory protein BMD_1200 PF01047 MarR family BMD_1201 PF01625 Peptide methionine sulfoxide reductase BMD_1201 PF01641 SelR domain BMD_1202 PF03845 Spore germination protein BMD_1203 PF05504 Spore germination B3/ GerAC like, C-terminal BMD_1204 PF03323 Bacillus/Clostridium GerA spore germination protein BMD_1205 PF00245 Alkaline phosphatase BMD_1206 PF04397 LytTr DNA-binding domain BMD_1206 PF00072 Response regulator receiver domain BMD_1207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1207 PF00072 Response regulator receiver domain BMD_1207 PF09308 LuxQ, periplasmic BMD_1207 PF00512 His Kinase A (phospho-acceptor) domain BMD_1208 PF03741 Integral membrane protein TerC family BMD_1209 PF04542 Sigma-70 region 2 BMD_1210 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_1216 PF00561 alpha/beta hydrolase fold BMD_1217 PF02386 Cation transport protein BMD_1221 PF00392 Bacterial regulatory proteins, gntR family BMD_1221 PF07729 FCD domain BMD_1222 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BMD_1222 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BMD_1222 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BMD_1223 PF02540 NAD synthase BMD_1224 PF02754 Cysteine-rich domain BMD_1225 PF02589 LUD domain BMD_1225 PF13183 4Fe-4S dicluster domain BMD_1225 PF11870 Domain of unknown function (DUF3390) BMD_1226 PF02589 LUD domain BMD_1227 PF13426 PAS domain BMD_1227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1227 PF13188 PAS domain BMD_1227 PF00989 PAS fold BMD_1227 PF00512 His Kinase A (phospho-acceptor) domain BMD_1228 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BMD_1228 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BMD_1230 PF01008 Initiation factor 2 subunit family BMD_1231 PF01636 Phosphotransferase enzyme family BMD_1232 PF00795 Carbon-nitrogen hydrolase BMD_1233 PF00155 Aminotransferase class I and II BMD_1234 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BMD_1234 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BMD_1236 PF00596 Class II Aldolase and Adducin N-terminal domain BMD_1237 PF03079 ARD/ARD' family BMD_1239 PF00005 ABC transporter BMD_1240 PF02653 Branched-chain amino acid transport system / permease component BMD_1241 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BMD_1241 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_1242 PF09388 Spo0E like sporulation regulatory protein BMD_1243 PF02535 ZIP Zinc transporter BMD_1245 PF01047 MarR family BMD_1247 PF00989 PAS fold BMD_1247 PF00512 His Kinase A (phospho-acceptor) domain BMD_1247 PF08447 PAS fold BMD_1247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1249 PF17871 AAA lid domain BMD_1249 PF10431 C-terminal, D2-small domain, of ClpB protein BMD_1249 PF00004 ATPase family associated with various cellular activities (AAA) BMD_1249 PF07724 AAA domain (Cdc48 subfamily) BMD_1253 PF00106 short chain dehydrogenase BMD_1255 PF06508 Queuosine biosynthesis protein QueC BMD_1256 PF01242 6-pyruvoyl tetrahydropterin synthase BMD_1257 PF04055 Radical SAM superfamily BMD_1258 PF14489 QueF-like protein BMD_1259 PF13460 NAD(P)H-binding BMD_1261 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BMD_1262 PF00027 Cyclic nucleotide-binding domain BMD_1262 PF01734 Patatin-like phospholipase BMD_1265 PF07486 Cell Wall Hydrolase BMD_1268 PF00860 Permease family BMD_1273 PF02965 Vitamin B12 dependent methionine synthase, activation domain BMD_1273 PF02574 Homocysteine S-methyltransferase BMD_1273 PF00809 Pterin binding enzyme BMD_1273 PF02607 B12 binding domain BMD_1273 PF02310 B12 binding domain BMD_1274 PF02574 Homocysteine S-methyltransferase BMD_1274 PF02219 Methylenetetrahydrofolate reductase BMD_1277 PF00677 Lumazine binding domain BMD_1278 PF00925 GTP cyclohydrolase II BMD_1278 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BMD_1279 PF00885 6,7-dimethyl-8-ribityllumazine synthase BMD_1281 PF03123 CAT RNA binding domain BMD_1281 PF00874 PRD domain BMD_1282 PF00367 phosphotransferase system, EIIB BMD_1282 PF02378 Phosphotransferase system, EIIC BMD_1282 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BMD_1283 PF00381 PTS HPr component phosphorylation site BMD_1284 PF00391 PEP-utilising enzyme, mobile domain BMD_1284 PF05524 PEP-utilising enzyme, N-terminal BMD_1284 PF02896 PEP-utilising enzyme, TIM barrel domain BMD_1285 PF04172 LrgB-like family BMD_1286 PF03788 LrgA family BMD_1287 PF03466 LysR substrate binding domain BMD_1287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1289 PF00583 Acetyltransferase (GNAT) family BMD_1291 PF00881 Nitroreductase family BMD_1292 PF00155 Aminotransferase class I and II BMD_1296 PF00072 Response regulator receiver domain BMD_1296 PF01584 CheW-like domain BMD_1297 PF14177 YkyB-like protein BMD_1298 PF03734 L,D-transpeptidase catalytic domain BMD_1298 PF01476 LysM domain BMD_1299 PF02541 Ppx/GppA phosphatase family BMD_1300 PF13089 Polyphosphate kinase N-terminal domain BMD_1300 PF17941 Polyphosphate kinase C-terminal domain 1 BMD_1300 PF13090 Polyphosphate kinase C-terminal domain 2 BMD_1300 PF02503 Polyphosphate kinase middle domain BMD_1302 PF10518 TAT (twin-arginine translocation) pathway signal sequence BMD_1302 PF00149 Calcineurin-like phosphoesterase BMD_1304 PF00563 EAL domain BMD_1304 PF10388 EAL-domain associated signalling protein domain BMD_1307 PF08796 Protein of unknown function (DUF1797) BMD_1309 PF03466 LysR substrate binding domain BMD_1309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1310 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BMD_1310 PF00132 Bacterial transferase hexapeptide (six repeats) BMD_1310 PF14602 Hexapeptide repeat of succinyl-transferase BMD_1311 PF01546 Peptidase family M20/M25/M40 BMD_1311 PF07687 Peptidase dimerisation domain BMD_1312 PF03698 Uncharacterised protein family (UPF0180) BMD_1313 PF00924 Mechanosensitive ion channel BMD_1314 PF10417 C-terminal domain of 1-Cys peroxiredoxin BMD_1314 PF00578 AhpC/TSA family BMD_1315 PF00578 AhpC/TSA family BMD_1316 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BMD_1316 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BMD_1317 PF00664 ABC transporter transmembrane region BMD_1317 PF00005 ABC transporter BMD_1318 PF00005 ABC transporter BMD_1318 PF00664 ABC transporter transmembrane region BMD_1319 PF02080 TrkA-C domain BMD_1319 PF02254 TrkA-N domain BMD_1320 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BMD_1320 PF17770 Ribonuclease J C-terminal domain BMD_1320 PF00753 Metallo-beta-lactamase superfamily BMD_1323 PF01327 Polypeptide deformylase BMD_1326 PF00676 Dehydrogenase E1 component BMD_1327 PF02780 Transketolase, C-terminal domain BMD_1327 PF02779 Transketolase, pyrimidine binding domain BMD_1328 PF00364 Biotin-requiring enzyme BMD_1328 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BMD_1328 PF02817 e3 binding domain BMD_1329 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BMD_1329 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_1331 PF02028 BCCT, betaine/carnitine/choline family transporter BMD_1333 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BMD_1333 PF01276 Orn/Lys/Arg decarboxylase, major domain BMD_1334 PF05256 Uncharacterised protein family (UPF0223) BMD_1336 PF06335 Protein of unknown function (DUF1054) BMD_1338 PF00459 Inositol monophosphatase family BMD_1341 PF14036 YlaH-like protein BMD_1343 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BMD_1345 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BMD_1346 PF13638 PIN domain BMD_1346 PF02562 PhoH-like protein BMD_1348 PF07408 Protein of unknown function (DUF1507) BMD_1349 PF01098 Cell cycle protein BMD_1350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BMD_1350 PF00682 HMGL-like BMD_1350 PF02436 Conserved carboxylase domain BMD_1350 PF00364 Biotin-requiring enzyme BMD_1350 PF00289 Biotin carboxylase, N-terminal domain BMD_1350 PF02785 Biotin carboxylase C-terminal domain BMD_1351 PF02628 Cytochrome oxidase assembly protein BMD_1352 PF01040 UbiA prenyltransferase family BMD_1353 PF00034 Cytochrome c BMD_1353 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BMD_1353 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BMD_1354 PF00115 Cytochrome C and Quinol oxidase polypeptide I BMD_1355 PF00510 Cytochrome c oxidase subunit III BMD_1356 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BMD_1357 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BMD_1358 PF08868 YugN-like family BMD_1359 PF00571 CBS domain BMD_1360 PF00188 Cysteine-rich secretory protein family BMD_1360 PF14504 CAP-associated N-terminal BMD_1361 PF09577 Sporulation protein YpjB (SpoYpjB) BMD_1362 PF04298 Putative neutral zinc metallopeptidase BMD_1363 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_1363 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_1364 PF03819 MazG nucleotide pyrophosphohydrolase domain BMD_1365 PF01113 Dihydrodipicolinate reductase, N-terminus BMD_1365 PF05173 Dihydrodipicolinate reductase, C-terminus BMD_1366 PF02142 MGS-like domain BMD_1367 PF02585 GlcNAc-PI de-N-acetylase BMD_1368 PF13439 Glycosyltransferase Family 4 BMD_1368 PF00534 Glycosyl transferases group 1 BMD_1369 PF01743 Poly A polymerase head domain BMD_1369 PF13735 tRNA nucleotidyltransferase domain 2 putative BMD_1369 PF12627 Probable RNA and SrmB- binding site of polymerase A BMD_1370 PF03099 Biotin/lipoate A/B protein ligase family BMD_1370 PF02237 Biotin protein ligase C terminal domain BMD_1370 PF08279 HTH domain BMD_1371 PF02548 Ketopantoate hydroxymethyltransferase BMD_1372 PF02569 Pantoate-beta-alanine ligase BMD_1373 PF02261 Aspartate decarboxylase BMD_1374 PF00929 Exonuclease BMD_1374 PF04851 Type III restriction enzyme, res subunit BMD_1374 PF13307 Helicase C-terminal domain BMD_1376 PF14084 Protein of unknown function (DUF4264) BMD_1378 PF00155 Aminotransferase class I and II BMD_1379 PF00152 tRNA synthetases class II (D, K and N) BMD_1379 PF01336 OB-fold nucleic acid binding domain BMD_1380 PF07261 Replication initiation and membrane attachment BMD_1381 PF10576 Iron-sulfur binding domain of endonuclease III BMD_1381 PF00633 Helix-hairpin-helix motif BMD_1381 PF00730 HhH-GPD superfamily base excision DNA repair protein BMD_1383 PF00905 Penicillin binding protein transpeptidase domain BMD_1383 PF00912 Transglycosylase BMD_1384 PF03838 Recombination protein U BMD_1385 PF10720 Protein of unknown function (DUF2515) BMD_1387 PF08807 Bacterial domain of unknown function (DUF1798) BMD_1390 PF14179 YppG-like protein BMD_1393 PF08757 CotH kinase protein BMD_1396 PF01053 Cys/Met metabolism PLP-dependent enzyme BMD_1397 PF01053 Cys/Met metabolism PLP-dependent enzyme BMD_1402 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BMD_1404 PF00313 'Cold-shock' DNA-binding domain BMD_1407 PF00990 Diguanylate cyclase, GGDEF domain BMD_1409 PF00271 Helicase conserved C-terminal domain BMD_1409 PF00270 DEAD/DEAH box helicase BMD_1409 PF09369 Domain of unknown function (DUF1998) BMD_1410 PF13482 RNase_H superfamily BMD_1412 PF06908 YspA SLOG family BMD_1414 PF05103 DivIVA protein BMD_1418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1418 PF07730 Histidine kinase BMD_1419 PF00196 Bacterial regulatory proteins, luxR family BMD_1419 PF00072 Response regulator receiver domain BMD_1420 PF16657 Maltogenic Amylase, C-terminal domain BMD_1420 PF00128 Alpha amylase, catalytic domain BMD_1421 PF01170 Putative RNA methylase family UPF0020 BMD_1421 PF02926 THUMP domain BMD_1425 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1426 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1428 PF17912 MalK OB fold domain BMD_1428 PF03459 TOBE domain BMD_1428 PF00005 ABC transporter BMD_1430 PF13307 Helicase C-terminal domain BMD_1431 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BMD_1432 PF00156 Phosphoribosyl transferase domain BMD_1433 PF00860 Permease family BMD_1434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1434 PF03466 LysR substrate binding domain BMD_1435 PF00171 Aldehyde dehydrogenase family BMD_1438 PF00195 Chalcone and stilbene synthases, N-terminal domain BMD_1438 PF02797 Chalcone and stilbene synthases, C-terminal domain BMD_1439 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BMD_1440 PF00350 Dynamin family BMD_1441 PF10127 RNA repair pathway DNA polymerase beta family BMD_1442 PF10752 Protein of unknown function (DUF2533) BMD_1446 PF13456 Reverse transcriptase-like BMD_1447 PF13456 Reverse transcriptase-like BMD_1448 PF10782 Zinc-finger BMD_1450 PF00313 'Cold-shock' DNA-binding domain BMD_1452 PF07690 Major Facilitator Superfamily BMD_1454 PF00860 Permease family BMD_1456 PF04951 D-aminopeptidase BMD_1457 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1458 PF12911 N-terminal TM domain of oligopeptide transport permease C BMD_1458 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_1461 PF02016 LD-carboxypeptidase N-terminal domain BMD_1461 PF17676 LD-carboxypeptidase C-terminal domain BMD_1462 PF00877 NlpC/P60 family BMD_1463 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_1463 PF00005 ABC transporter BMD_1466 PF13302 Acetyltransferase (GNAT) domain BMD_1467 PF03707 Bacterial signalling protein N terminal repeat BMD_1467 PF00563 EAL domain BMD_1467 PF00990 Diguanylate cyclase, GGDEF domain BMD_1472 PF00072 Response regulator receiver domain BMD_1472 PF00196 Bacterial regulatory proteins, luxR family BMD_1473 PF07730 Histidine kinase BMD_1474 PF00487 Fatty acid desaturase BMD_1475 PF10990 Protein of unknown function (DUF2809) BMD_1477 PF13396 Phospholipase_D-nuclease N-terminal BMD_1477 PF13091 PLD-like domain BMD_1478 PF06724 Domain of Unknown Function (DUF1206) BMD_1479 PF10676 Spore germination protein gerPA/gerPF BMD_1480 PF01476 LysM domain BMD_1480 PF00877 NlpC/P60 family BMD_1481 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BMD_1482 PF00483 Nucleotidyl transferase BMD_1484 PF07690 Major Facilitator Superfamily BMD_1487 PF01979 Amidohydrolase family BMD_1488 PF03841 L-seryl-tRNA selenium transferase BMD_1489 PF07071 KDGP aldolase BMD_1491 PF07702 UTRA domain BMD_1491 PF00392 Bacterial regulatory proteins, gntR family BMD_1492 PF02447 GntP family permease BMD_1493 PF03437 BtpA family BMD_1494 PF13419 Haloacid dehalogenase-like hydrolase BMD_1496 PF00245 Alkaline phosphatase BMD_1497 PF01323 DSBA-like thioredoxin domain BMD_1498 PF00082 Subtilase family BMD_1500 PF01047 MarR family BMD_1502 PF07690 Major Facilitator Superfamily BMD_1506 PF14151 YfhD-like protein BMD_1507 PF01032 FecCD transport family BMD_1508 PF01032 FecCD transport family BMD_1509 PF01497 Periplasmic binding protein BMD_1510 PF00005 ABC transporter BMD_1512 PF01053 Cys/Met metabolism PLP-dependent enzyme BMD_1513 PF07690 Major Facilitator Superfamily BMD_1514 PF00248 Aldo/keto reductase family BMD_1517 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BMD_1517 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BMD_1518 PF01638 HxlR-like helix-turn-helix BMD_1519 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BMD_1520 PF01266 FAD dependent oxidoreductase BMD_1520 PF01571 Aminomethyltransferase folate-binding domain BMD_1520 PF08669 Glycine cleavage T-protein C-terminal barrel domain BMD_1520 PF16350 FAD dependent oxidoreductase central domain BMD_1521 PF01266 FAD dependent oxidoreductase BMD_1522 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BMD_1522 PF00355 Rieske [2Fe-2S] domain BMD_1523 PF00005 ABC transporter BMD_1523 PF00571 CBS domain BMD_1524 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1526 PF00224 Pyruvate kinase, barrel domain BMD_1526 PF02887 Pyruvate kinase, alpha/beta domain BMD_1526 PF00391 PEP-utilising enzyme, mobile domain BMD_1527 PF09308 LuxQ, periplasmic BMD_1527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1527 PF00512 His Kinase A (phospho-acceptor) domain BMD_1527 PF00072 Response regulator receiver domain BMD_1528 PF01739 CheR methyltransferase, SAM binding domain BMD_1528 PF03705 CheR methyltransferase, all-alpha domain BMD_1529 PF07228 Stage II sporulation protein E (SpoIIE) BMD_1529 PF13426 PAS domain BMD_1531 PF13520 Amino acid permease BMD_1533 PF13419 Haloacid dehalogenase-like hydrolase BMD_1536 PF02435 Levansucrase/Invertase BMD_1537 PF00251 Glycosyl hydrolases family 32 N-terminal domain BMD_1537 PF08244 Glycosyl hydrolases family 32 C terminal BMD_1538 PF00210 Ferritin-like domain BMD_1539 PF07690 Major Facilitator Superfamily BMD_1540 PF00155 Aminotransferase class I and II BMD_1541 PF01370 NAD dependent epimerase/dehydratase family BMD_1542 PF09021 HutP BMD_1543 PF07690 Major Facilitator Superfamily BMD_1546 PF00171 Aldehyde dehydrogenase family BMD_1547 PF00753 Metallo-beta-lactamase superfamily BMD_1550 PF01810 LysE type translocator BMD_1551 PF00324 Amino acid permease BMD_1553 PF14139 YpzG-like protein BMD_1554 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BMD_1554 PF17770 Ribonuclease J C-terminal domain BMD_1554 PF00753 Metallo-beta-lactamase superfamily BMD_1560 PF00324 Amino acid permease BMD_1563 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_1564 PF00356 Bacterial regulatory proteins, lacI family BMD_1565 PF01306 LacY proton/sugar symporter BMD_1566 PF08244 Glycosyl hydrolases family 32 C terminal BMD_1566 PF00251 Glycosyl hydrolases family 32 N-terminal domain BMD_1567 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BMD_1568 PF02435 Levansucrase/Invertase BMD_1569 PF00158 Sigma-54 interaction domain BMD_1569 PF00874 PRD domain BMD_1569 PF03610 PTS system fructose IIA component BMD_1570 PF03610 PTS system fructose IIA component BMD_1571 PF03830 PTS system sorbose subfamily IIB component BMD_1572 PF03609 PTS system sorbose-specific iic component BMD_1573 PF03613 PTS system mannose/fructose/sorbose family IID component BMD_1574 PF00251 Glycosyl hydrolases family 32 N-terminal domain BMD_1574 PF08244 Glycosyl hydrolases family 32 C terminal BMD_1575 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1576 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1577 PF00497 Bacterial extracellular solute-binding proteins, family 3 BMD_1578 PF03180 NLPA lipoprotein BMD_1579 PF09383 NIL domain BMD_1579 PF00005 ABC transporter BMD_1580 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1582 PF00296 Luciferase-like monooxygenase BMD_1583 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BMD_1583 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_1584 PF03180 NLPA lipoprotein BMD_1585 PF09383 NIL domain BMD_1585 PF00005 ABC transporter BMD_1586 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1588 PF03180 NLPA lipoprotein BMD_1590 PF00557 Metallopeptidase family M24 BMD_1593 PF04073 Aminoacyl-tRNA editing domain BMD_1595 PF00248 Aldo/keto reductase family BMD_1596 PF00221 Aromatic amino acid lyase BMD_1597 PF01175 Urocanase Rossmann-like domain BMD_1597 PF17391 Urocanase N-terminal domain BMD_1597 PF17392 Urocanase C-terminal domain BMD_1598 PF01979 Amidohydrolase family BMD_1599 PF00491 Arginase family BMD_1600 PF01156 Inosine-uridine preferring nucleoside hydrolase BMD_1601 PF00180 Isocitrate/isopropylmalate dehydrogenase BMD_1602 PF03606 C4-dicarboxylate anaerobic carrier BMD_1603 PF01979 Amidohydrolase family BMD_1604 PF03575 Peptidase family S51 BMD_1605 PF00158 Sigma-54 interaction domain BMD_1605 PF02954 Bacterial regulatory protein, Fis family BMD_1605 PF13426 PAS domain BMD_1613 PF01047 MarR family BMD_1614 PF00583 Acetyltransferase (GNAT) family BMD_1615 PF01022 Bacterial regulatory protein, arsR family BMD_1621 PF13419 Haloacid dehalogenase-like hydrolase BMD_1625 PF01476 LysM domain BMD_1625 PF00877 NlpC/P60 family BMD_1629 PF05163 DinB family BMD_1634 PF03466 LysR substrate binding domain BMD_1634 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1635 PF12697 Alpha/beta hydrolase family BMD_1638 PF00561 alpha/beta hydrolase fold BMD_1641 PF00512 His Kinase A (phospho-acceptor) domain BMD_1641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1641 PF00672 HAMP domain BMD_1642 PF00072 Response regulator receiver domain BMD_1642 PF00486 Transcriptional regulatory protein, C terminal BMD_1643 PF09335 SNARE associated Golgi protein BMD_1644 PF04101 Glycosyltransferase family 28 C-terminal domain BMD_1644 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BMD_1645 PF13739 Deacetylase PdaC BMD_1645 PF01522 Polysaccharide deacetylase BMD_1645 PF11738 Protein of unknown function (DUF3298) BMD_1649 PF03845 Spore germination protein BMD_1650 PF05504 Spore germination B3/ GerAC like, C-terminal BMD_1651 PF03323 Bacillus/Clostridium GerA spore germination protein BMD_1652 PF01699 Sodium/calcium exchanger protein BMD_1653 PF13426 PAS domain BMD_1653 PF02954 Bacterial regulatory protein, Fis family BMD_1653 PF00158 Sigma-54 interaction domain BMD_1654 PF00465 Iron-containing alcohol dehydrogenase BMD_1655 PF00171 Aldehyde dehydrogenase family BMD_1656 PF00356 Bacterial regulatory proteins, lacI family BMD_1660 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BMD_1660 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BMD_1661 PF00892 EamA-like transporter family BMD_1662 PF03466 LysR substrate binding domain BMD_1662 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1664 PF03176 MMPL family BMD_1665 PF00440 Bacterial regulatory proteins, tetR family BMD_1665 PF08361 MAATS-type transcriptional repressor, C-terminal region BMD_1666 PF03741 Integral membrane protein TerC family BMD_1668 PF07875 Coat F domain BMD_1670 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_1670 PF01740 STAS domain BMD_1671 PF01037 Lrp/AsnC ligand binding domain BMD_1672 PF06906 Protein of unknown function (DUF1272) BMD_1678 PF00893 Small Multidrug Resistance protein BMD_1679 PF00893 Small Multidrug Resistance protein BMD_1680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1680 PF03466 LysR substrate binding domain BMD_1682 PF00313 'Cold-shock' DNA-binding domain BMD_1683 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_1683 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_1683 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_1691 PF08141 Small acid-soluble spore protein H family BMD_1694 PF00701 Dihydrodipicolinate synthetase family BMD_1695 PF00892 EamA-like transporter family BMD_1697 PF00571 CBS domain BMD_1698 PF04239 Protein of unknown function (DUF421) BMD_1699 PF07690 Major Facilitator Superfamily BMD_1700 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_1700 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BMD_1701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_1701 PF03466 LysR substrate binding domain BMD_1702 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_1703 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1704 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1705 PF00005 ABC transporter BMD_1705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_1706 PF00005 ABC transporter BMD_1706 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_1707 PF01554 MatE BMD_1710 PF13581 Histidine kinase-like ATPase domain BMD_1712 PF07690 Major Facilitator Superfamily BMD_1713 PF01476 LysM domain BMD_1713 PF00704 Glycosyl hydrolases family 18 BMD_1714 PF01476 LysM domain BMD_1714 PF03734 L,D-transpeptidase catalytic domain BMD_1715 PF00682 HMGL-like BMD_1715 PF07836 DmpG-like communication domain BMD_1716 PF03601 Conserved hypothetical protein 698 BMD_1719 PF08241 Methyltransferase domain BMD_1720 PF01638 HxlR-like helix-turn-helix BMD_1721 PF00753 Metallo-beta-lactamase superfamily BMD_1722 PF00795 Carbon-nitrogen hydrolase BMD_1724 PF13302 Acetyltransferase (GNAT) domain BMD_1725 PF13229 Right handed beta helix region BMD_1726 PF00154 recA bacterial DNA recombination protein BMD_1727 PF01451 Low molecular weight phosphotyrosine protein phosphatase BMD_1730 PF00313 'Cold-shock' DNA-binding domain BMD_1741 PF00324 Amino acid permease BMD_1742 PF05163 DinB family BMD_1743 PF07690 Major Facilitator Superfamily BMD_1747 PF03323 Bacillus/Clostridium GerA spore germination protein BMD_1748 PF05504 Spore germination B3/ GerAC like, C-terminal BMD_1749 PF03845 Spore germination protein BMD_1750 PF03845 Spore germination protein BMD_1751 PF03845 Spore germination protein BMD_1754 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_1754 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_1755 PF13411 MerR HTH family regulatory protein BMD_1755 PF07739 TipAS antibiotic-recognition domain BMD_1756 PF05504 Spore germination B3/ GerAC like, C-terminal BMD_1757 PF07885 Ion channel BMD_1757 PF02254 TrkA-N domain BMD_1758 PF13520 Amino acid permease BMD_1759 PF06146 Phosphate-starvation-inducible E BMD_1761 PF11181 Heat induced stress protein YflT BMD_1761 PF09557 Domain of unknown function (DUF2382) BMD_1762 PF01740 STAS domain BMD_1763 PF00672 HAMP domain BMD_1763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1763 PF00512 His Kinase A (phospho-acceptor) domain BMD_1764 PF00072 Response regulator receiver domain BMD_1764 PF00486 Transcriptional regulatory protein, C terminal BMD_1766 PF00873 AcrB/AcrD/AcrF family BMD_1768 PF00324 Amino acid permease BMD_1769 PF09021 HutP BMD_1770 PF00221 Aromatic amino acid lyase BMD_1771 PF17391 Urocanase N-terminal domain BMD_1771 PF01175 Urocanase Rossmann-like domain BMD_1771 PF17392 Urocanase C-terminal domain BMD_1772 PF01979 Amidohydrolase family BMD_1773 PF00491 Arginase family BMD_1774 PF07690 Major Facilitator Superfamily BMD_1776 PF04226 Transglycosylase associated protein BMD_1777 PF00375 Sodium:dicarboxylate symporter family BMD_1778 PF10415 Fumarase C C-terminus BMD_1778 PF00206 Lyase BMD_1779 PF07875 Coat F domain BMD_1782 PF09557 Domain of unknown function (DUF2382) BMD_1782 PF11181 Heat induced stress protein YflT BMD_1783 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_1783 PF01740 STAS domain BMD_1784 PF02586 SOS response associated peptidase (SRAP) BMD_1785 PF02586 SOS response associated peptidase (SRAP) BMD_1788 PF11181 Heat induced stress protein YflT BMD_1788 PF09557 Domain of unknown function (DUF2382) BMD_1793 PF11181 Heat induced stress protein YflT BMD_1798 PF03358 NADPH-dependent FMN reductase BMD_1798 PF01566 Natural resistance-associated macrophage protein BMD_1799 PF11181 Heat induced stress protein YflT BMD_1800 PF00571 CBS domain BMD_1801 PF01910 Thiamine-binding protein BMD_1802 PF09557 Domain of unknown function (DUF2382) BMD_1802 PF11181 Heat induced stress protein YflT BMD_1805 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_1805 PF01740 STAS domain BMD_1806 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_1806 PF01740 STAS domain BMD_1808 PF07987 Domain of unkown function (DUF1775) BMD_1809 PF09323 Domain of unknown function (DUF1980) BMD_1810 PF03773 Predicted permease BMD_1813 PF03773 Predicted permease BMD_1817 PF00403 Heavy-metal-associated domain BMD_1820 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_1820 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_1825 PF05525 Branched-chain amino acid transport protein BMD_1826 PF00248 Aldo/keto reductase family BMD_1830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BMD_1830 PF00391 PEP-utilising enzyme, mobile domain BMD_1831 PF07722 Peptidase C26 BMD_1832 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_1833 PF00528 Binding-protein-dependent transport system inner membrane component BMD_1835 PF00005 ABC transporter BMD_1835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_1836 PF00005 ABC transporter BMD_1836 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_1838 PF04073 Aminoacyl-tRNA editing domain BMD_1839 PF17247 Family of unknown function (DUF5316) BMD_1840 PF00083 Sugar (and other) transporter BMD_1844 PF00171 Aldehyde dehydrogenase family BMD_1847 PF00923 Transaldolase/Fructose-6-phosphate aldolase BMD_1850 PF01263 Aldose 1-epimerase BMD_1852 PF00571 CBS domain BMD_1855 PF00067 Cytochrome P450 BMD_1856 PF00440 Bacterial regulatory proteins, tetR family BMD_1856 PF08361 MAATS-type transcriptional repressor, C-terminal region BMD_1857 PF00480 ROK family BMD_1859 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BMD_1859 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BMD_1860 PF00083 Sugar (and other) transporter BMD_1861 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BMD_1862 PF00115 Cytochrome C and Quinol oxidase polypeptide I BMD_1863 PF00510 Cytochrome c oxidase subunit III BMD_1864 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BMD_1865 PF00582 Universal stress protein family BMD_1867 PF02628 Cytochrome oxidase assembly protein BMD_1868 PF13454 FAD-NAD(P)-binding BMD_1870 PF00860 Permease family BMD_1871 PF03600 Citrate transporter BMD_1872 PF00676 Dehydrogenase E1 component BMD_1873 PF02780 Transketolase, C-terminal domain BMD_1873 PF02779 Transketolase, pyrimidine binding domain BMD_1874 PF02817 e3 binding domain BMD_1874 PF00364 Biotin-requiring enzyme BMD_1874 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BMD_1875 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_1875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BMD_1876 PF02954 Bacterial regulatory protein, Fis family BMD_1876 PF00158 Sigma-54 interaction domain BMD_1876 PF01590 GAF domain BMD_1877 PF00107 Zinc-binding dehydrogenase BMD_1877 PF08240 Alcohol dehydrogenase GroES-like domain BMD_1878 PF01053 Cys/Met metabolism PLP-dependent enzyme BMD_1879 PF01047 MarR family BMD_1884 PF01594 AI-2E family transporter BMD_1885 PF02416 mttA/Hcf106 family BMD_1886 PF02449 Beta-galactosidase BMD_1886 PF08533 Beta-galactosidase C-terminal domain BMD_1886 PF08532 Beta-galactosidase trimerisation domain BMD_1890 PF08858 IDEAL domain BMD_1890 PF08864 UPF0302 domain BMD_1891 PF00582 Universal stress protein family BMD_1892 PF00672 HAMP domain BMD_1892 PF00512 His Kinase A (phospho-acceptor) domain BMD_1892 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1892 PF13426 PAS domain BMD_1893 PF00486 Transcriptional regulatory protein, C terminal BMD_1893 PF00072 Response regulator receiver domain BMD_1894 PF02583 Metal-sensitive transcriptional repressor BMD_1895 PF00403 Heavy-metal-associated domain BMD_1896 PF00403 Heavy-metal-associated domain BMD_1898 PF07563 Protein of unknown function (DUF1541) BMD_1899 PF07690 Major Facilitator Superfamily BMD_1905 PF01022 Bacterial regulatory protein, arsR family BMD_1906 PF02040 Arsenical pump membrane protein BMD_1908 PF03061 Thioesterase superfamily BMD_1909 PF00293 NUDIX domain BMD_1910 PF04239 Protein of unknown function (DUF421) BMD_1913 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BMD_1913 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BMD_1914 PF00392 Bacterial regulatory proteins, gntR family BMD_1914 PF07729 FCD domain BMD_1915 PF00180 Isocitrate/isopropylmalate dehydrogenase BMD_1916 PF07690 Major Facilitator Superfamily BMD_1917 PF01638 HxlR-like helix-turn-helix BMD_1918 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BMD_1918 PF00925 GTP cyclohydrolase II BMD_1919 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BMD_1919 PF01872 RibD C-terminal domain BMD_1928 PF00581 Rhodanese-like domain BMD_1930 PF13539 D-alanyl-D-alanine carboxypeptidase BMD_1932 PF01522 Polysaccharide deacetylase BMD_1937 PF04204 Homoserine O-succinyltransferase BMD_1938 PF01268 Formate--tetrahydrofolate ligase BMD_1940 PF00255 Glutathione peroxidase BMD_1941 PF01966 HD domain BMD_1942 PF00005 ABC transporter BMD_1942 PF12848 ABC transporter BMD_1942 PF16326 ABC transporter C-terminal domain BMD_1943 PF13769 Virulence factor BMD_1943 PF08712 Scaffold protein Nfu/NifU N terminal BMD_1944 PF01522 Polysaccharide deacetylase BMD_1944 PF11738 Protein of unknown function (DUF3298) BMD_1944 PF13739 Deacetylase PdaC BMD_1945 PF06491 Disulphide isomerase BMD_1946 PF04445 Putative SAM-dependent methyltransferase BMD_1947 PF14005 YpjP-like protein BMD_1948 PF00085 Thioredoxin BMD_1949 PF01497 Periplasmic binding protein BMD_1951 PF03186 CobD/Cbib protein BMD_1952 PF00155 Aminotransferase class I and II BMD_1954 PF02654 Cobalamin-5-phosphate synthase BMD_1955 PF00300 Histidine phosphatase superfamily (branch 1) BMD_1957 PF01923 Cobalamin adenosyltransferase BMD_1958 PF00892 EamA-like transporter family BMD_1959 PF13411 MerR HTH family regulatory protein BMD_1961 PF07683 Cobalamin synthesis protein cobW C-terminal domain BMD_1961 PF02492 CobW/HypB/UreG, nucleotide-binding domain BMD_1962 PF08546 Ketopantoate reductase PanE/ApbA C terminal BMD_1962 PF02558 Ketopantoate reductase PanE/ApbA BMD_1963 PF01541 GIY-YIG catalytic domain BMD_1963 PF02151 UvrB/uvrC motif BMD_1963 PF08459 UvrC Helix-hairpin-helix N-terminal BMD_1965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BMD_1965 PF01367 5'-3' exonuclease, C-terminal SAM fold BMD_1966 PF08830 Protein of unknown function (DUF1806) BMD_1967 PF02585 GlcNAc-PI de-N-acetylase BMD_1968 PF14748 Pyrroline-5-carboxylate reductase dimerisation BMD_1968 PF03807 NADP oxidoreductase coenzyme F420-dependent BMD_1969 PF04134 Protein of unknown function, DUF393 BMD_1970 PF04542 Sigma-70 region 2 BMD_1970 PF08281 Sigma-70, region 4 BMD_1972 PF00011 Hsp20/alpha crystallin family BMD_1973 PF02334 Replication terminator protein BMD_1974 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BMD_1974 PF18277 AbrB C-terminal domain BMD_1975 PF01554 MatE BMD_1977 PF01593 Flavin containing amine oxidoreductase BMD_1978 PF00535 Glycosyl transferase family 2 BMD_1981 PF00884 Sulfatase BMD_1983 PF05816 Toxic anion resistance protein (TelA) BMD_1987 PF01522 Polysaccharide deacetylase BMD_1987 PF11738 Protein of unknown function (DUF3298) BMD_1987 PF13739 Deacetylase PdaC BMD_1988 PF00999 Sodium/hydrogen exchanger family BMD_1988 PF03471 Transporter associated domain BMD_1988 PF02080 TrkA-C domain BMD_1989 PF02225 PA domain BMD_1989 PF04389 Peptidase family M28 BMD_1990 PF00512 His Kinase A (phospho-acceptor) domain BMD_1990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_1990 PF13188 PAS domain BMD_1990 PF13426 PAS domain BMD_1990 PF00989 PAS fold BMD_1992 PF00375 Sodium:dicarboxylate symporter family BMD_1993 PF03714 Bacterial pullanase-associated domain BMD_1993 PF00128 Alpha amylase, catalytic domain BMD_1993 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BMD_1994 PF00171 Aldehyde dehydrogenase family BMD_1995 PF00258 Flavodoxin BMD_1995 PF00067 Cytochrome P450 BMD_1995 PF00667 FAD binding domain BMD_1995 PF00175 Oxidoreductase NAD-binding domain BMD_1998 PF01618 MotA/TolQ/ExbB proton channel family BMD_1999 PF00691 OmpA family BMD_1999 PF13677 Membrane MotB of proton-channel complex MotA/MotB BMD_2001 PF01593 Flavin containing amine oxidoreductase BMD_2002 PF09844 Uncharacterized conserved protein (COG2071) BMD_2003 PF01625 Peptide methionine sulfoxide reductase BMD_2004 PF03553 Na+/H+ antiporter family BMD_2005 PF07729 FCD domain BMD_2005 PF00392 Bacterial regulatory proteins, gntR family BMD_2006 PF00324 Amino acid permease BMD_2007 PF01757 Acyltransferase family BMD_2008 PF05698 Bacterial trigger factor protein (TF) C-terminus BMD_2009 PF00072 Response regulator receiver domain BMD_2009 PF00486 Transcriptional regulatory protein, C terminal BMD_2010 PF00512 His Kinase A (phospho-acceptor) domain BMD_2010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2011 PF01979 Amidohydrolase family BMD_2012 PF00854 POT family BMD_2014 PF03949 Malic enzyme, NAD binding domain BMD_2014 PF00390 Malic enzyme, N-terminal domain BMD_2015 PF03390 2-hydroxycarboxylate transporter family BMD_2017 PF00296 Luciferase-like monooxygenase BMD_2020 PF00462 Glutaredoxin BMD_2021 PF00497 Bacterial extracellular solute-binding proteins, family 3 BMD_2022 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2023 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2024 PF00005 ABC transporter BMD_2025 PF01687 Riboflavin kinase BMD_2026 PF00296 Luciferase-like monooxygenase BMD_2028 PF05036 Sporulation related domain BMD_2028 PF01520 N-acetylmuramoyl-L-alanine amidase BMD_2035 PF00067 Cytochrome P450 BMD_2036 PF03641 Possible lysine decarboxylase BMD_2037 PF00390 Malic enzyme, N-terminal domain BMD_2037 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BMD_2037 PF03949 Malic enzyme, NAD binding domain BMD_2038 PF03703 Bacterial PH domain BMD_2039 PF03703 Bacterial PH domain BMD_2040 PF00291 Pyridoxal-phosphate dependent enzyme BMD_2041 PF00294 pfkB family carbohydrate kinase BMD_2042 PF01040 UbiA prenyltransferase family BMD_2043 PF05908 Poly-gamma-glutamate hydrolase BMD_2047 PF13411 MerR HTH family regulatory protein BMD_2052 PF08141 Small acid-soluble spore protein H family BMD_2053 PF13039 Protein of unknown function (DUF3900) BMD_2053 PF13037 Domain of unknown function (DUF3898) BMD_2054 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_2054 PF03466 LysR substrate binding domain BMD_2055 PF01493 GXGXG motif BMD_2055 PF01645 Conserved region in glutamate synthase BMD_2055 PF04898 Glutamate synthase central domain BMD_2055 PF00310 Glutamine amidotransferases class-II BMD_2056 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_2056 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BMD_2060 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BMD_2060 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BMD_2062 PF13091 PLD-like domain BMD_2064 PF01047 MarR family BMD_2065 PF03788 LrgA family BMD_2066 PF04172 LrgB-like family BMD_2067 PF01740 STAS domain BMD_2067 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_2070 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BMD_2071 PF00535 Glycosyl transferase family 2 BMD_2072 PF04138 GtrA-like protein BMD_2073 PF00483 Nucleotidyl transferase BMD_2074 PF00486 Transcriptional regulatory protein, C terminal BMD_2074 PF00072 Response regulator receiver domain BMD_2075 PF00512 His Kinase A (phospho-acceptor) domain BMD_2075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2075 PF00672 HAMP domain BMD_2076 PF10055 Uncharacterized small protein (DUF2292) BMD_2079 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2080 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2081 PF00005 ABC transporter BMD_2081 PF17850 CysA C-terminal regulatory domain BMD_2081 PF12857 TOBE-like domain BMD_2082 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BMD_2082 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BMD_2083 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_2083 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_2086 PF08220 DeoR-like helix-turn-helix domain BMD_2086 PF00455 DeoR C terminal sensor domain BMD_2087 PF00294 pfkB family carbohydrate kinase BMD_2088 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BMD_2088 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BMD_2089 PF13840 ACT domain BMD_2089 PF00696 Amino acid kinase family BMD_2091 PF00080 Copper/zinc superoxide dismutase (SODC) BMD_2092 PF01593 Flavin containing amine oxidoreductase BMD_2094 PF00106 short chain dehydrogenase BMD_2095 PF01022 Bacterial regulatory protein, arsR family BMD_2096 PF00171 Aldehyde dehydrogenase family BMD_2097 PF03070 TENA/THI-4/PQQC family BMD_2100 PF00209 Sodium:neurotransmitter symporter family BMD_2101 PF07486 Cell Wall Hydrolase BMD_2102 PF00356 Bacterial regulatory proteins, lacI family BMD_2104 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_2104 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_2105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_2105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_2106 PF01261 Xylose isomerase-like TIM barrel BMD_2107 PF02245 Methylpurine-DNA glycosylase (MPG) BMD_2109 PF08245 Mur ligase middle domain BMD_2109 PF02875 Mur ligase family, glutamate ligase domain BMD_2109 PF01225 Mur ligase family, catalytic domain BMD_2110 PF01225 Mur ligase family, catalytic domain BMD_2110 PF02875 Mur ligase family, glutamate ligase domain BMD_2110 PF08245 Mur ligase middle domain BMD_2112 PF00583 Acetyltransferase (GNAT) family BMD_2113 PF08360 QacR-like protein, C-terminal region BMD_2113 PF00440 Bacterial regulatory proteins, tetR family BMD_2114 PF07690 Major Facilitator Superfamily BMD_2115 PF02110 Hydroxyethylthiazole kinase family BMD_2116 PF02581 Thiamine monophosphate synthase BMD_2117 PF16242 Pyridoxamine 5'-phosphate oxidase like BMD_2121 PF08281 Sigma-70, region 4 BMD_2121 PF04542 Sigma-70 region 2 BMD_2123 PF07728 AAA domain (dynein-related subfamily) BMD_2124 PF00092 von Willebrand factor type A domain BMD_2125 PF00892 EamA-like transporter family BMD_2126 PF02837 Glycosyl hydrolases family 2, sugar binding domain BMD_2126 PF02929 Beta galactosidase small chain BMD_2126 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BMD_2126 PF16353 Domain of unknown function(DUF4981) BMD_2126 PF00703 Glycosyl hydrolases family 2 BMD_2127 PF12833 Helix-turn-helix domain BMD_2130 PF13302 Acetyltransferase (GNAT) domain BMD_2131 PF00005 ABC transporter BMD_2134 PF13243 Squalene-hopene cyclase C-terminal domain BMD_2134 PF13249 Squalene-hopene cyclase N-terminal domain BMD_2136 PF01256 Carbohydrate kinase BMD_2136 PF03853 YjeF-related protein N-terminus BMD_2138 PF02567 Phenazine biosynthesis-like protein BMD_2140 PF01925 Sulfite exporter TauE/SafE BMD_2141 PF11495 Archaeal transcriptional regulator TrmB BMD_2141 PF01978 Sugar-specific transcriptional regulator TrmB BMD_2142 PF02525 Flavodoxin-like fold BMD_2145 PF00486 Transcriptional regulatory protein, C terminal BMD_2145 PF00072 Response regulator receiver domain BMD_2146 PF00512 His Kinase A (phospho-acceptor) domain BMD_2146 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2147 PF00155 Aminotransferase class I and II BMD_2147 PF00392 Bacterial regulatory proteins, gntR family BMD_2148 PF01810 LysE type translocator BMD_2149 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_2152 PF07690 Major Facilitator Superfamily BMD_2154 PF10127 RNA repair pathway DNA polymerase beta family BMD_2156 PF08671 Anti-repressor SinI BMD_2156 PF01381 Helix-turn-helix BMD_2157 PF01494 FAD binding domain BMD_2159 PF00293 NUDIX domain BMD_2160 PF00857 Isochorismatase family BMD_2161 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BMD_2161 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BMD_2161 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BMD_2162 PF01467 Cytidylyltransferase-like BMD_2163 PF02540 NAD synthase BMD_2164 PF00575 S1 RNA binding domain BMD_2165 PF05922 Peptidase inhibitor I9 BMD_2165 PF13860 FlgD Ig-like domain BMD_2165 PF02225 PA domain BMD_2165 PF00082 Subtilase family BMD_2167 PF00708 Acylphosphatase BMD_2168 PF07690 Major Facilitator Superfamily BMD_2169 PF00296 Luciferase-like monooxygenase BMD_2171 PF12833 Helix-turn-helix domain BMD_2171 PF07883 Cupin domain BMD_2172 PF00892 EamA-like transporter family BMD_2173 PF12848 ABC transporter BMD_2173 PF00005 ABC transporter BMD_2174 PF03323 Bacillus/Clostridium GerA spore germination protein BMD_2175 PF03845 Spore germination protein BMD_2177 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ BMD_2178 PF00005 ABC transporter BMD_2180 PF03553 Na+/H+ antiporter family BMD_2182 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BMD_2182 PF00356 Bacterial regulatory proteins, lacI family BMD_2183 PF11132 Transcriptional regulator protein (SplA) BMD_2189 PF01131 DNA topoisomerase BMD_2189 PF01751 Toprim domain BMD_2191 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_2191 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BMD_2194 PF00107 Zinc-binding dehydrogenase BMD_2194 PF13823 Alcohol dehydrogenase GroES-associated BMD_2194 PF08240 Alcohol dehydrogenase GroES-like domain BMD_2195 PF13091 PLD-like domain BMD_2199 PF03553 Na+/H+ antiporter family BMD_2201 PF13302 Acetyltransferase (GNAT) domain BMD_2202 PF09680 Family of unknown function BMD_2203 PF04294 VanW like protein BMD_2208 PF11181 Heat induced stress protein YflT BMD_2212 PF00271 Helicase conserved C-terminal domain BMD_2212 PF00570 HRDC domain BMD_2212 PF16124 RecQ zinc-binding BMD_2212 PF09382 RQC domain BMD_2212 PF00270 DEAD/DEAH box helicase BMD_2213 PF00158 Sigma-54 interaction domain BMD_2214 PF00491 Arginase family BMD_2216 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BMD_2219 PF01040 UbiA prenyltransferase family BMD_2220 PF01411 tRNA synthetases class II (A) BMD_2220 PF02272 DHHA1 domain BMD_2220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BMD_2221 PF01061 ABC-2 type transporter BMD_2222 PF08000 Bacterial PH domain BMD_2223 PF07690 Major Facilitator Superfamily BMD_2224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_2224 PF03466 LysR substrate binding domain BMD_2225 PF00392 Bacterial regulatory proteins, gntR family BMD_2226 PF00005 ABC transporter BMD_2228 PF04542 Sigma-70 region 2 BMD_2228 PF08281 Sigma-70, region 4 BMD_2230 PF00817 impB/mucB/samB family BMD_2230 PF11798 IMS family HHH motif BMD_2230 PF11799 impB/mucB/samB family C-terminal domain BMD_2231 PF02566 OsmC-like protein BMD_2232 PF01047 MarR family BMD_2236 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) BMD_2238 PF01476 LysM domain BMD_2238 PF06725 3D domain BMD_2242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2242 PF13426 PAS domain BMD_2242 PF13188 PAS domain BMD_2242 PF00989 PAS fold BMD_2242 PF00512 His Kinase A (phospho-acceptor) domain BMD_2243 PF03807 NADP oxidoreductase coenzyme F420-dependent BMD_2243 PF14748 Pyrroline-5-carboxylate reductase dimerisation BMD_2244 PF00696 Amino acid kinase family BMD_2244 PF01472 PUA domain BMD_2245 PF00171 Aldehyde dehydrogenase family BMD_2248 PF03737 Aldolase/RraA BMD_2251 PF03176 MMPL family BMD_2253 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_2254 PF03631 Virulence factor BrkB BMD_2256 PF07859 alpha/beta hydrolase fold BMD_2265 PF01850 PIN domain BMD_2267 PF12464 Maltose acetyltransferase BMD_2267 PF14602 Hexapeptide repeat of succinyl-transferase BMD_2268 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_2270 PF01740 STAS domain BMD_2271 PF11755 Protein of unknown function (DUF3311) BMD_2272 PF00474 Sodium:solute symporter family BMD_2275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BMD_2275 PF07733 Bacterial DNA polymerase III alpha NTPase domain BMD_2275 PF14579 Helix-hairpin-helix motif BMD_2275 PF02811 PHP domain BMD_2275 PF00929 Exonuclease BMD_2275 PF14480 DNA polymerase III polC-type N-terminus I BMD_2275 PF11490 DNA polymerase III polC-type N-terminus II BMD_2278 PF05547 Immune inhibitor A peptidase M6 BMD_2279 PF10415 Fumarase C C-terminus BMD_2279 PF00206 Lyase BMD_2281 PF01471 Putative peptidoglycan binding domain BMD_2281 PF01183 Glycosyl hydrolases family 25 BMD_2283 PF13426 PAS domain BMD_2283 PF00989 PAS fold BMD_2283 PF00512 His Kinase A (phospho-acceptor) domain BMD_2283 PF13188 PAS domain BMD_2283 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2285 PF02868 Thermolysin metallopeptidase, alpha-helical domain BMD_2285 PF01447 Thermolysin metallopeptidase, catalytic domain BMD_2285 PF03413 Peptidase propeptide and YPEB domain BMD_2285 PF07504 Fungalysin/Thermolysin Propeptide Motif BMD_2287 PF00923 Transaldolase/Fructose-6-phosphate aldolase BMD_2289 PF00881 Nitroreductase family BMD_2291 PF00106 short chain dehydrogenase BMD_2292 PF17203 Single cache domain 3 BMD_2292 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BMD_2292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2292 PF00989 PAS fold BMD_2293 PF12431 Transcriptional regulator BMD_2293 PF00072 Response regulator receiver domain BMD_2294 PF03600 Citrate transporter BMD_2298 PF01546 Peptidase family M20/M25/M40 BMD_2298 PF07687 Peptidase dimerisation domain BMD_2301 PF03551 Transcriptional regulator PadR-like family BMD_2303 PF01596 O-methyltransferase BMD_2304 PF03466 LysR substrate binding domain BMD_2304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_2307 PF00375 Sodium:dicarboxylate symporter family BMD_2308 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BMD_2308 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BMD_2311 PF01266 FAD dependent oxidoreductase BMD_2312 PF10925 Protein of unknown function (DUF2680) BMD_2313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2313 PF00512 His Kinase A (phospho-acceptor) domain BMD_2313 PF00989 PAS fold BMD_2313 PF08447 PAS fold BMD_2315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BMD_2315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_2315 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_2317 PF00501 AMP-binding enzyme BMD_2317 PF13193 AMP-binding enzyme C-terminal domain BMD_2318 PF00440 Bacterial regulatory proteins, tetR family BMD_2318 PF16925 Tetracyclin repressor-like, C-terminal domain BMD_2319 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BMD_2319 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BMD_2320 PF00378 Enoyl-CoA hydratase/isomerase BMD_2323 PF04029 2-phosphosulpholactate phosphatase BMD_2324 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BMD_2324 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_2324 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_2326 PF00378 Enoyl-CoA hydratase/isomerase BMD_2327 PF00107 Zinc-binding dehydrogenase BMD_2327 PF08240 Alcohol dehydrogenase GroES-like domain BMD_2328 PF01680 SOR/SNZ family BMD_2331 PF01144 Coenzyme A transferase BMD_2332 PF01144 Coenzyme A transferase BMD_2333 PF02803 Thiolase, C-terminal domain BMD_2333 PF00108 Thiolase, N-terminal domain BMD_2334 PF00202 Aminotransferase class-III BMD_2336 PF00171 Aldehyde dehydrogenase family BMD_2339 PF12544 Lysine-2,3-aminomutase BMD_2340 PF14122 YokU-like protein, putative antitoxin BMD_2341 PF00324 Amino acid permease BMD_2342 PF00753 Metallo-beta-lactamase superfamily BMD_2345 PF00465 Iron-containing alcohol dehydrogenase BMD_2346 PF07690 Major Facilitator Superfamily BMD_2347 PF12833 Helix-turn-helix domain BMD_2347 PF02311 AraC-like ligand binding domain BMD_2348 PF02525 Flavodoxin-like fold BMD_2349 PF07478 D-ala D-ala ligase C-terminus BMD_2349 PF01820 D-ala D-ala ligase N-terminus BMD_2351 PF00892 EamA-like transporter family BMD_2353 PF00155 Aminotransferase class I and II BMD_2355 PF00253 Ribosomal protein S14p/S29e BMD_2356 PF07486 Cell Wall Hydrolase BMD_2358 PF00884 Sulfatase BMD_2358 PF16347 Domain of unknown function (DUF4976) BMD_2359 PF03129 Anticodon binding domain BMD_2359 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BMD_2359 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BMD_2359 PF02824 TGS domain BMD_2360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BMD_2360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BMD_2360 PF02824 TGS domain BMD_2360 PF03129 Anticodon binding domain BMD_2362 PF13520 Amino acid permease BMD_2363 PF07690 Major Facilitator Superfamily BMD_2364 PF01047 MarR family BMD_2365 PF03176 MMPL family BMD_2367 PF00005 ABC transporter BMD_2367 PF17912 MalK OB fold domain BMD_2367 PF03459 TOBE domain BMD_2368 PF01380 SIS domain BMD_2369 PF01547 Bacterial extracellular solute-binding protein BMD_2370 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2371 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2372 PF00294 pfkB family carbohydrate kinase BMD_2373 PF07702 UTRA domain BMD_2373 PF00392 Bacterial regulatory proteins, gntR family BMD_2374 PF13426 PAS domain BMD_2374 PF01740 STAS domain BMD_2375 PF08327 Activator of Hsp90 ATPase homolog 1-like protein BMD_2376 PF01022 Bacterial regulatory protein, arsR family BMD_2378 PF12697 Alpha/beta hydrolase family BMD_2380 PF08450 SMP-30/Gluconolactonase/LRE-like region BMD_2381 PF01152 Bacterial-like globin BMD_2382 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal BMD_2382 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal BMD_2383 PF05675 Protein of unknown function (DUF817) BMD_2385 PF00183 Hsp90 protein BMD_2386 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BMD_2386 PF01842 ACT domain BMD_2386 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BMD_2390 PF14470 Bacterial PH domain BMD_2398 PF06146 Phosphate-starvation-inducible E BMD_2402 PF04607 Region found in RelA / SpoT proteins BMD_2402 PF13291 ACT domain BMD_2402 PF02824 TGS domain BMD_2403 PF01183 Glycosyl hydrolases family 25 BMD_2403 PF01471 Putative peptidoglycan binding domain BMD_2405 PF00892 EamA-like transporter family BMD_2406 PF00155 Aminotransferase class I and II BMD_2406 PF00392 Bacterial regulatory proteins, gntR family BMD_2410 PF06150 ChaB BMD_2411 PF14864 Alkyl sulfatase C-terminal BMD_2411 PF00753 Metallo-beta-lactamase superfamily BMD_2411 PF14863 Alkyl sulfatase dimerisation BMD_2413 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_2413 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BMD_2429 PF01497 Periplasmic binding protein BMD_2430 PF07977 FabA-like domain BMD_2432 PF00293 NUDIX domain BMD_2433 PF13460 NAD(P)H-binding BMD_2434 PF00501 AMP-binding enzyme BMD_2434 PF13193 AMP-binding enzyme C-terminal domain BMD_2435 PF01047 MarR family BMD_2436 PF04294 VanW like protein BMD_2437 PF00501 AMP-binding enzyme BMD_2437 PF13193 AMP-binding enzyme C-terminal domain BMD_2444 PF00282 Pyridoxal-dependent decarboxylase conserved domain BMD_2447 PF14492 Elongation Factor G, domain II BMD_2447 PF00679 Elongation factor G C-terminus BMD_2447 PF03764 Elongation factor G, domain IV BMD_2447 PF00009 Elongation factor Tu GTP binding domain BMD_2450 PF01226 Formate/nitrite transporter BMD_2451 PF10057 Uncharacterized conserved protein (DUF2294) BMD_2453 PF07690 Major Facilitator Superfamily BMD_2454 PF01565 FAD binding domain BMD_2455 PF00672 HAMP domain BMD_2455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BMD_2455 PF02743 Cache domain BMD_2458 PF00149 Calcineurin-like phosphoesterase BMD_2459 PF03167 Uracil DNA glycosylase superfamily BMD_2460 PF00877 NlpC/P60 family BMD_2461 PF02602 Uroporphyrinogen-III synthase HemD BMD_2462 PF01614 Bacterial transcriptional regulator BMD_2462 PF09339 IclR helix-turn-helix domain BMD_2463 PF02785 Biotin carboxylase C-terminal domain BMD_2463 PF00289 Biotin carboxylase, N-terminal domain BMD_2463 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BMD_2464 PF00364 Biotin-requiring enzyme BMD_2465 PF02626 Carboxyltransferase domain, subdomain A and B BMD_2466 PF02682 Carboxyltransferase domain, subdomain C and D BMD_2467 PF07286 Protein of unknown function (DUF1445) BMD_2468 PF01566 Natural resistance-associated macrophage protein BMD_2469 PF03746 LamB/YcsF family BMD_2470 PF00128 Alpha amylase, catalytic domain BMD_2470 PF11941 Domain of unknown function (DUF3459) BMD_2472 PF07690 Major Facilitator Superfamily BMD_2476 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_2476 PF01740 STAS domain BMD_2478 PF02525 Flavodoxin-like fold BMD_2482 PF00501 AMP-binding enzyme BMD_2482 PF13193 AMP-binding enzyme C-terminal domain BMD_2483 PF02632 BioY family BMD_2484 PF02803 Thiolase, C-terminal domain BMD_2484 PF00108 Thiolase, N-terminal domain BMD_2486 PF00271 Helicase conserved C-terminal domain BMD_2486 PF00176 SNF2 family N-terminal domain BMD_2486 PF04434 SWIM zinc finger BMD_2488 PF03358 NADPH-dependent FMN reductase BMD_2489 PF00072 Response regulator receiver domain BMD_2489 PF00196 Bacterial regulatory proteins, luxR family BMD_2490 PF13185 GAF domain BMD_2490 PF07730 Histidine kinase BMD_2494 PF13536 Putative multidrug resistance efflux transporter BMD_2496 PF13673 Acetyltransferase (GNAT) domain BMD_2497 PF00920 Dehydratase family BMD_2498 PF12146 Serine aminopeptidase, S33 BMD_2499 PF01368 DHH family BMD_2499 PF02833 DHHA2 domain BMD_2502 PF01063 Amino-transferase class IV BMD_2504 PF01553 Acyltransferase BMD_2505 PF00860 Permease family BMD_2506 PF09349 OHCU decarboxylase BMD_2506 PF01014 Uricase BMD_2507 PF00576 HIUase/Transthyretin family BMD_2508 PF13302 Acetyltransferase (GNAT) domain BMD_2511 PF01566 Natural resistance-associated macrophage protein BMD_2514 PF01047 MarR family BMD_2516 PF02899 Phage integrase, N-terminal SAM-like domain BMD_2516 PF00589 Phage integrase family BMD_2520 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BMD_2521 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BMD_2522 PF06277 Ethanolamine utilisation protein EutA BMD_2523 PF09515 Thiamine transporter protein (Thia_YuaJ) BMD_2525 PF00324 Amino acid permease BMD_2527 PF00583 Acetyltransferase (GNAT) family BMD_2528 PF00857 Isochorismatase family BMD_2530 PF08892 YqcI/YcgG family BMD_2531 PF01810 LysE type translocator BMD_2532 PF08386 TAP-like protein BMD_2532 PF00561 alpha/beta hydrolase fold BMD_2533 PF03989 DNA gyrase C-terminal domain, beta-propeller BMD_2533 PF00521 DNA gyrase/topoisomerase IV, subunit A BMD_2534 PF01751 Toprim domain BMD_2534 PF00204 DNA gyrase B BMD_2534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2534 PF00986 DNA gyrase B subunit, carboxyl terminus BMD_2535 PF13380 CoA binding domain BMD_2536 PF02660 Glycerol-3-phosphate acyltransferase BMD_2538 PF01521 Iron-sulphur cluster biosynthesis BMD_2539 PF03061 Thioesterase superfamily BMD_2543 PF08177 Small acid-soluble spore protein N family BMD_2545 PF00578 AhpC/TSA family BMD_2546 PF00694 Aconitase C-terminal domain BMD_2546 PF00330 Aconitase family (aconitate hydratase) BMD_2548 PF08179 Small acid-soluble spore protein P family BMD_2549 PF00011 Hsp20/alpha crystallin family BMD_2550 PF02735 Ku70/Ku80 beta-barrel domain BMD_2556 PF00111 2Fe-2S iron-sulfur cluster binding domain BMD_2556 PF01799 [2Fe-2S] binding domain BMD_2557 PF03450 CO dehydrogenase flavoprotein C-terminal domain BMD_2557 PF00941 FAD binding domain in molybdopterin dehydrogenase BMD_2558 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BMD_2558 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BMD_2559 PF12804 MobA-like NTP transferase domain BMD_2560 PF02625 XdhC and CoxI family BMD_2560 PF13478 XdhC Rossmann domain BMD_2572 PF01066 CDP-alcohol phosphatidyltransferase BMD_2574 PF07690 Major Facilitator Superfamily BMD_2575 PF04463 Protein of unknown function (DUF523) BMD_2576 PF03780 Asp23 family, cell envelope-related function BMD_2579 PF03631 Virulence factor BrkB BMD_2581 PF07690 Major Facilitator Superfamily BMD_2582 PF07690 Major Facilitator Superfamily BMD_2583 PF13411 MerR HTH family regulatory protein BMD_2585 PF00484 Carbonic anhydrase BMD_2586 PF00916 Sulfate permease family BMD_2586 PF01740 STAS domain BMD_2587 PF00072 Response regulator receiver domain BMD_2587 PF00486 Transcriptional regulatory protein, C terminal BMD_2588 PF00512 His Kinase A (phospho-acceptor) domain BMD_2588 PF00672 HAMP domain BMD_2588 PF13426 PAS domain BMD_2588 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2590 PF09346 SMI1 / KNR4 family (SUKH-1) BMD_2591 PF13520 Amino acid permease BMD_2593 PF07454 Stage II sporulation protein P (SpoIIP) BMD_2594 PF12557 Cob(I)alamin adenosyltransferase N terminal BMD_2594 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BMD_2596 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_2597 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BMD_2597 PF07685 CobB/CobQ-like glutamine amidotransferase domain BMD_2598 PF01890 Cobalamin synthesis G C-terminus BMD_2598 PF11760 Cobalamin synthesis G N-terminal BMD_2598 PF11761 Cobalamin biosynthesis central region BMD_2599 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_2600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_2601 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_2602 PF01888 CbiD BMD_2603 PF02570 Precorrin-8X methylmutase BMD_2604 PF02571 Precorrin-6x reductase CbiJ/CobK BMD_2605 PF01903 CbiX BMD_2606 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BMD_2606 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_2609 PF05343 M42 glutamyl aminopeptidase BMD_2610 PF00375 Sodium:dicarboxylate symporter family BMD_2611 PF05525 Branched-chain amino acid transport protein BMD_2615 PF00909 Ammonium Transporter Family BMD_2617 PF07849 Protein of unknown function (DUF1641) BMD_2618 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_2619 PF03547 Membrane transport protein BMD_2620 PF03949 Malic enzyme, NAD binding domain BMD_2620 PF00390 Malic enzyme, N-terminal domain BMD_2621 PF01546 Peptidase family M20/M25/M40 BMD_2622 PF07690 Major Facilitator Superfamily BMD_2626 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BMD_2627 PF02441 Flavoprotein BMD_2628 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_2628 PF03466 LysR substrate binding domain BMD_2629 PF03547 Membrane transport protein BMD_2633 PF00296 Luciferase-like monooxygenase BMD_2634 PF13183 4Fe-4S dicluster domain BMD_2634 PF02754 Cysteine-rich domain BMD_2635 PF01565 FAD binding domain BMD_2635 PF02913 FAD linked oxidases, C-terminal domain BMD_2636 PF05651 Putative sugar diacid recognition BMD_2636 PF13556 PucR C-terminal helix-turn-helix domain BMD_2636 PF17853 GGDEF-like domain BMD_2637 PF01965 DJ-1/PfpI family BMD_2640 PF00465 Iron-containing alcohol dehydrogenase BMD_2643 PF00005 ABC transporter BMD_2644 PF13185 GAF domain BMD_2644 PF07730 Histidine kinase BMD_2644 PF13492 GAF domain BMD_2644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2645 PF00196 Bacterial regulatory proteins, luxR family BMD_2645 PF00072 Response regulator receiver domain BMD_2652 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase BMD_2653 PF00296 Luciferase-like monooxygenase BMD_2655 PF09335 SNARE associated Golgi protein BMD_2656 PF04493 Endonuclease V BMD_2657 PF03009 Glycerophosphoryl diester phosphodiesterase family BMD_2658 PF00795 Carbon-nitrogen hydrolase BMD_2658 PF00583 Acetyltransferase (GNAT) family BMD_2659 PF00158 Sigma-54 interaction domain BMD_2659 PF02954 Bacterial regulatory protein, Fis family BMD_2659 PF13426 PAS domain BMD_2660 PF00795 Carbon-nitrogen hydrolase BMD_2661 PF00324 Amino acid permease BMD_2670 PF14431 YwqJ-like deaminase BMD_2670 PF04740 LXG domain of WXG superfamily BMD_2670 PF14449 Pre-toxin TG BMD_2674 PF01554 MatE BMD_2677 PF01047 MarR family BMD_2678 PF03372 Endonuclease/Exonuclease/phosphatase family BMD_2679 PF00156 Phosphoribosyl transferase domain BMD_2679 PF05139 Erythromycin esterase BMD_2680 PF03928 Haem-degrading BMD_2681 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_2681 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_2682 PF08220 DeoR-like helix-turn-helix domain BMD_2682 PF00455 DeoR C terminal sensor domain BMD_2683 PF05816 Toxic anion resistance protein (TelA) BMD_2684 PF14266 Putative component of 'biosynthetic module' BMD_2685 PF02342 TerD domain BMD_2686 PF02342 TerD domain BMD_2687 PF02342 TerD domain BMD_2688 PF00149 Calcineurin-like phosphoesterase BMD_2688 PF02872 5'-nucleotidase, C-terminal domain BMD_2691 PF12679 ABC-2 family transporter protein BMD_2692 PF00005 ABC transporter BMD_2694 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BMD_2694 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BMD_2695 PF00313 'Cold-shock' DNA-binding domain BMD_2696 PF00392 Bacterial regulatory proteins, gntR family BMD_2696 PF00155 Aminotransferase class I and II BMD_2697 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_2697 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_2697 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_2698 PF00313 'Cold-shock' DNA-binding domain BMD_2705 PF00107 Zinc-binding dehydrogenase BMD_2705 PF08240 Alcohol dehydrogenase GroES-like domain BMD_2706 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BMD_2706 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BMD_2707 PF00072 Response regulator receiver domain BMD_2707 PF04397 LytTr DNA-binding domain BMD_2708 PF04239 Protein of unknown function (DUF421) BMD_2709 PF07690 Major Facilitator Superfamily BMD_2710 PF01476 LysM domain BMD_2710 PF06725 3D domain BMD_2711 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BMD_2711 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BMD_2718 PF08264 Anticodon-binding domain of tRNA BMD_2718 PF00133 tRNA synthetases class I (I, L, M and V) BMD_2719 PF08031 Berberine and berberine like BMD_2719 PF01565 FAD binding domain BMD_2720 PF01734 Patatin-like phospholipase BMD_2721 PF08264 Anticodon-binding domain of tRNA BMD_2721 PF00133 tRNA synthetases class I (I, L, M and V) BMD_2731 PF06039 Malate:quinone oxidoreductase (Mqo) BMD_2737 PF02056 Family 4 glycosyl hydrolase BMD_2737 PF11975 Family 4 glycosyl hydrolase C-terminal domain BMD_2746 PF00561 alpha/beta hydrolase fold BMD_2747 PF02595 Glycerate kinase family BMD_2748 PF02447 GntP family permease BMD_2749 PF05651 Putative sugar diacid recognition BMD_2749 PF13556 PucR C-terminal helix-turn-helix domain BMD_2749 PF17853 GGDEF-like domain BMD_2750 PF00465 Iron-containing alcohol dehydrogenase BMD_2751 PF05656 Protein of unknown function (DUF805) BMD_2755 PF00905 Penicillin binding protein transpeptidase domain BMD_2755 PF00912 Transglycosylase BMD_2759 PF16916 Dimerisation domain of Zinc Transporter BMD_2759 PF01545 Cation efflux family BMD_2760 PF04239 Protein of unknown function (DUF421) BMD_2762 PF03239 Iron permease FTR1 family BMD_2766 PF02525 Flavodoxin-like fold BMD_2770 PF00266 Aminotransferase class-V BMD_2771 PF01592 NifU-like N terminal domain BMD_2772 PF04443 Acyl-protein synthetase, LuxE BMD_2775 PF00501 AMP-binding enzyme BMD_2776 PF02627 Carboxymuconolactone decarboxylase family BMD_2777 PF00440 Bacterial regulatory proteins, tetR family BMD_2782 PF13520 Amino acid permease BMD_2783 PF05525 Branched-chain amino acid transport protein BMD_2784 PF00216 Bacterial DNA-binding protein BMD_2785 PF05504 Spore germination B3/ GerAC like, C-terminal BMD_2786 PF03845 Spore germination protein BMD_2791 PF00313 'Cold-shock' DNA-binding domain BMD_2792 PF00270 DEAD/DEAH box helicase BMD_2792 PF00271 Helicase conserved C-terminal domain BMD_2794 PF00313 'Cold-shock' DNA-binding domain BMD_2796 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_2797 PF00132 Bacterial transferase hexapeptide (six repeats) BMD_2800 PF07690 Major Facilitator Superfamily BMD_2801 PF01047 MarR family BMD_2801 PF00583 Acetyltransferase (GNAT) family BMD_2803 PF00892 EamA-like transporter family BMD_2806 PF00497 Bacterial extracellular solute-binding proteins, family 3 BMD_2807 PF00296 Luciferase-like monooxygenase BMD_2811 PF02293 AmiS/UreI family transporter BMD_2812 PF01773 Na+ dependent nucleoside transporter N-terminus BMD_2812 PF07662 Na+ dependent nucleoside transporter C-terminus BMD_2813 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BMD_2814 PF01791 DeoC/LacD family aldolase BMD_2815 PF00591 Glycosyl transferase family, a/b domain BMD_2815 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BMD_2815 PF02885 Glycosyl transferase family, helical bundle domain BMD_2817 PF04198 Putative sugar-binding domain BMD_2823 PF02660 Glycerol-3-phosphate acyltransferase BMD_2825 PF03551 Transcriptional regulator PadR-like family BMD_2826 PF01435 Peptidase family M48 BMD_2827 PF00753 Metallo-beta-lactamase superfamily BMD_2828 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BMD_2830 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2831 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2832 PF00106 short chain dehydrogenase BMD_2833 PF02667 Short chain fatty acid transporter BMD_2837 PF09587 Bacterial capsule synthesis protein PGA_cap BMD_2838 PF04143 Sulphur transport BMD_2839 PF00563 EAL domain BMD_2839 PF12792 CSS motif domain associated with EAL BMD_2841 PF00465 Iron-containing alcohol dehydrogenase BMD_2842 PF03466 LysR substrate binding domain BMD_2842 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_2845 PF00583 Acetyltransferase (GNAT) family BMD_2845 PF00814 Glycoprotease family BMD_2846 PF07690 Major Facilitator Superfamily BMD_2853 PF08240 Alcohol dehydrogenase GroES-like domain BMD_2853 PF00107 Zinc-binding dehydrogenase BMD_2854 PF07729 FCD domain BMD_2854 PF00392 Bacterial regulatory proteins, gntR family BMD_2858 PF00999 Sodium/hydrogen exchanger family BMD_2859 PF00571 CBS domain BMD_2859 PF01595 Cyclin M transmembrane N-terminal domain BMD_2859 PF03471 Transporter associated domain BMD_2864 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BMD_2864 PF00005 ABC transporter BMD_2865 PF00005 ABC transporter BMD_2866 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2867 PF00528 Binding-protein-dependent transport system inner membrane component BMD_2868 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_2870 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_2870 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_2874 PF00565 Staphylococcal nuclease homologue BMD_2876 PF06039 Malate:quinone oxidoreductase (Mqo) BMD_2877 PF03618 Kinase/pyrophosphorylase BMD_2887 PF02073 Thermophilic metalloprotease (M29) BMD_2888 PF09339 IclR helix-turn-helix domain BMD_2888 PF01614 Bacterial transcriptional regulator BMD_2889 PF01557 Fumarylacetoacetate (FAA) hydrolase family BMD_2890 PF01274 Malate synthase BMD_2891 PF01565 FAD binding domain BMD_2891 PF02913 FAD linked oxidases, C-terminal domain BMD_2892 PF13183 4Fe-4S dicluster domain BMD_2892 PF02754 Cysteine-rich domain BMD_2893 PF01565 FAD binding domain BMD_2893 PF02913 FAD linked oxidases, C-terminal domain BMD_2894 PF02652 L-lactate permease BMD_2898 PF10997 Alternate to MurJ BMD_2899 PF12679 ABC-2 family transporter protein BMD_2900 PF13732 Domain of unknown function (DUF4162) BMD_2900 PF00005 ABC transporter BMD_2901 PF13396 Phospholipase_D-nuclease N-terminal BMD_2904 PF04542 Sigma-70 region 2 BMD_2904 PF08281 Sigma-70, region 4 BMD_2907 PF10676 Spore germination protein gerPA/gerPF BMD_2909 PF05360 yiaA/B two helix domain BMD_2911 PF12146 Serine aminopeptidase, S33 BMD_2912 PF00296 Luciferase-like monooxygenase BMD_2913 PF01740 STAS domain BMD_2916 PF04239 Protein of unknown function (DUF421) BMD_2917 PF02557 D-alanyl-D-alanine carboxypeptidase BMD_2920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_2920 PF00512 His Kinase A (phospho-acceptor) domain BMD_2920 PF00989 PAS fold BMD_2920 PF16736 Single Cache-like BMD_2921 PF00486 Transcriptional regulatory protein, C terminal BMD_2921 PF00072 Response regulator receiver domain BMD_2922 PF01494 FAD binding domain BMD_2925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BMD_2925 PF02817 e3 binding domain BMD_2925 PF00364 Biotin-requiring enzyme BMD_2926 PF16870 2-oxoglutarate dehydrogenase C-terminal BMD_2926 PF02779 Transketolase, pyrimidine binding domain BMD_2926 PF00676 Dehydrogenase E1 component BMD_2928 PF07690 Major Facilitator Superfamily BMD_2929 PF02566 OsmC-like protein BMD_2931 PF04235 Protein of unknown function (DUF418) BMD_2938 PF00005 ABC transporter BMD_2939 PF12399 Branched-chain amino acid ATP-binding cassette transporter BMD_2939 PF00005 ABC transporter BMD_2940 PF02653 Branched-chain amino acid transport system / permease component BMD_2940 PF11862 Domain of unknown function (DUF3382) BMD_2941 PF02653 Branched-chain amino acid transport system / permease component BMD_2942 PF13458 Periplasmic binding protein BMD_2943 PF00543 Nitrogen regulatory protein P-II BMD_2944 PF00909 Ammonium Transporter Family BMD_2949 PF00561 alpha/beta hydrolase fold BMD_2952 PF13673 Acetyltransferase (GNAT) domain BMD_2952 PF04229 GrpB protein BMD_2954 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BMD_2954 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_2954 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_2957 PF10676 Spore germination protein gerPA/gerPF BMD_2958 PF10676 Spore germination protein gerPA/gerPF BMD_2962 PF00005 ABC transporter BMD_2963 PF01032 FecCD transport family BMD_2964 PF07685 CobB/CobQ-like glutamine amidotransferase domain BMD_2964 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BMD_2966 PF13520 Amino acid permease BMD_2970 PF01380 SIS domain BMD_2972 PF00356 Bacterial regulatory proteins, lacI family BMD_2974 PF07690 Major Facilitator Superfamily BMD_2975 PF00294 pfkB family carbohydrate kinase BMD_2978 PF01593 Flavin containing amine oxidoreductase BMD_2979 PF00535 Glycosyl transferase family 2 BMD_2983 PF13386 Cytochrome C biogenesis protein transmembrane region BMD_2985 PF01774 UreD urease accessory protein BMD_2986 PF02492 CobW/HypB/UreG, nucleotide-binding domain BMD_2987 PF01730 UreF BMD_2988 PF02814 UreE urease accessory protein, N-terminal domain BMD_2988 PF05194 UreE urease accessory protein, C-terminal domain BMD_2989 PF00449 Urease alpha-subunit, N-terminal domain BMD_2989 PF01979 Amidohydrolase family BMD_2990 PF00699 Urease beta subunit BMD_2991 PF00547 Urease, gamma subunit BMD_2992 PF00591 Glycosyl transferase family, a/b domain BMD_2992 PF02885 Glycosyl transferase family, helical bundle domain BMD_2993 PF01476 LysM domain BMD_2993 PF00877 NlpC/P60 family BMD_2994 PF06725 3D domain BMD_2994 PF03990 G5-linked-Ubiquitin-like domain BMD_2994 PF07501 G5 domain BMD_2995 PF00881 Nitroreductase family BMD_2996 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BMD_2997 PF09335 SNARE associated Golgi protein BMD_2999 PF01738 Dienelactone hydrolase family BMD_3000 PF00905 Penicillin binding protein transpeptidase domain BMD_3000 PF00912 Transglycosylase BMD_3001 PF01943 Polysaccharide biosynthesis protein BMD_3002 PF00892 EamA-like transporter family BMD_3003 PF00392 Bacterial regulatory proteins, gntR family BMD_3003 PF00155 Aminotransferase class I and II BMD_3007 PF00664 ABC transporter transmembrane region BMD_3007 PF00005 ABC transporter BMD_3012 PF05908 Poly-gamma-glutamate hydrolase BMD_3016 PF00210 Ferritin-like domain BMD_3017 PF00210 Ferritin-like domain BMD_3019 PF07875 Coat F domain BMD_3020 PF00571 CBS domain BMD_3020 PF03471 Transporter associated domain BMD_3020 PF01595 Cyclin M transmembrane N-terminal domain BMD_3022 PF00571 CBS domain BMD_3022 PF00478 IMP dehydrogenase / GMP reductase domain BMD_3024 PF10503 Esterase PHB depolymerase BMD_3025 PF01266 FAD dependent oxidoreductase BMD_3025 PF00355 Rieske [2Fe-2S] domain BMD_3027 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BMD_3028 PF02153 Prephenate dehydrogenase BMD_3028 PF01842 ACT domain BMD_3029 PF01264 Chorismate synthase BMD_3030 PF00793 DAHP synthetase I family BMD_3030 PF01817 Chorismate mutase type II BMD_3032 PF02417 Chromate transporter BMD_3033 PF02417 Chromate transporter BMD_3035 PF00266 Aminotransferase class-V BMD_3036 PF01546 Peptidase family M20/M25/M40 BMD_3037 PF17853 GGDEF-like domain BMD_3037 PF13556 PucR C-terminal helix-turn-helix domain BMD_3037 PF07905 Purine catabolism regulatory protein-like family BMD_3038 PF01910 Thiamine-binding protein BMD_3039 PF01476 LysM domain BMD_3039 PF00877 NlpC/P60 family BMD_3040 PF06628 Catalase-related immune-responsive BMD_3040 PF00199 Catalase BMD_3042 PF00209 Sodium:neurotransmitter symporter family BMD_3050 PF01925 Sulfite exporter TauE/SafE BMD_3051 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BMD_3052 PF10502 Signal peptidase, peptidase S26 BMD_3054 PF03033 Glycosyltransferase family 28 N-terminal domain BMD_3054 PF04101 Glycosyltransferase family 28 C-terminal domain BMD_3056 PF01022 Bacterial regulatory protein, arsR family BMD_3058 PF00881 Nitroreductase family BMD_3061 PF04229 GrpB protein BMD_3062 PF01520 N-acetylmuramoyl-L-alanine amidase BMD_3062 PF08239 Bacterial SH3 domain BMD_3063 PF00253 Ribosomal protein S14p/S29e BMD_3064 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BMD_3064 PF18277 AbrB C-terminal domain BMD_3065 PF05163 DinB family BMD_3066 PF05958 tRNA (Uracil-5-)-methyltransferase BMD_3066 PF01938 TRAM domain BMD_3069 PF02277 Phosphoribosyltransferase BMD_3070 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_3070 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_3073 PF07690 Major Facilitator Superfamily BMD_3074 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_3074 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_3075 PF00781 Diacylglycerol kinase catalytic domain BMD_3077 PF00285 Citrate synthase, C-terminal domain BMD_3079 PF03466 LysR substrate binding domain BMD_3079 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3080 PF00892 EamA-like transporter family BMD_3081 PF00155 Aminotransferase class I and II BMD_3081 PF00392 Bacterial regulatory proteins, gntR family BMD_3085 PF13426 PAS domain BMD_3085 PF01740 STAS domain BMD_3086 PF01740 STAS domain BMD_3092 PF01740 STAS domain BMD_3092 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_3093 PF04226 Transglycosylase associated protein BMD_3096 PF00574 Clp protease BMD_3099 PF10415 Fumarase C C-terminus BMD_3099 PF00206 Lyase BMD_3100 PF00710 Asparaginase, N-terminal BMD_3100 PF17763 Glutaminase/Asparaginase C-terminal domain BMD_3101 PF01381 Helix-turn-helix BMD_3109 PF13520 Amino acid permease BMD_3110 PF02082 Transcriptional regulator BMD_3115 PF03949 Malic enzyme, NAD binding domain BMD_3115 PF00390 Malic enzyme, N-terminal domain BMD_3116 PF02522 Aminoglycoside 3-N-acetyltransferase BMD_3118 PF13302 Acetyltransferase (GNAT) domain BMD_3121 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BMD_3121 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BMD_3122 PF00175 Oxidoreductase NAD-binding domain BMD_3122 PF00258 Flavodoxin BMD_3122 PF00667 FAD binding domain BMD_3125 PF07690 Major Facilitator Superfamily BMD_3126 PF01047 MarR family BMD_3127 PF07739 TipAS antibiotic-recognition domain BMD_3127 PF13411 MerR HTH family regulatory protein BMD_3128 PF13302 Acetyltransferase (GNAT) domain BMD_3136 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BMD_3139 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BMD_3141 PF00873 AcrB/AcrD/AcrF family BMD_3143 PF00440 Bacterial regulatory proteins, tetR family BMD_3144 PF12823 Domain of unknown function (DUF3817) BMD_3146 PF01979 Amidohydrolase family BMD_3148 PF03816 Cell envelope-related transcriptional attenuator domain BMD_3149 PF13302 Acetyltransferase (GNAT) domain BMD_3151 PF02673 Bacitracin resistance protein BacA BMD_3153 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BMD_3154 PF00510 Cytochrome c oxidase subunit III BMD_3155 PF00115 Cytochrome C and Quinol oxidase polypeptide I BMD_3156 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BMD_3163 PF01022 Bacterial regulatory protein, arsR family BMD_3164 PF00403 Heavy-metal-associated domain BMD_3165 PF08241 Methyltransferase domain BMD_3168 PF01520 N-acetylmuramoyl-L-alanine amidase BMD_3168 PF05036 Sporulation related domain BMD_3169 PF01810 LysE type translocator BMD_3170 PF13520 Amino acid permease BMD_3175 PF04203 Sortase domain BMD_3176 PF01925 Sulfite exporter TauE/SafE BMD_3177 PF13302 Acetyltransferase (GNAT) domain BMD_3178 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BMD_3180 PF00107 Zinc-binding dehydrogenase BMD_3180 PF16884 N-terminal domain of oxidoreductase BMD_3185 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_3185 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_3189 PF02600 Disulfide bond formation protein DsbB BMD_3190 PF13462 Thioredoxin BMD_3191 PF01435 Peptidase family M48 BMD_3199 PF08645 Polynucleotide kinase 3 phosphatase BMD_3199 PF00475 Imidazoleglycerol-phosphate dehydratase BMD_3201 PF00440 Bacterial regulatory proteins, tetR family BMD_3202 PF00893 Small Multidrug Resistance protein BMD_3203 PF00009 Elongation factor Tu GTP binding domain BMD_3203 PF16658 Class II release factor RF3, C-terminal domain BMD_3203 PF03144 Elongation factor Tu domain 2 BMD_3204 PF00313 'Cold-shock' DNA-binding domain BMD_3205 PF04239 Protein of unknown function (DUF421) BMD_3208 PF13460 NAD(P)H-binding BMD_3214 PF11553 Protein of unknown function (DUF3231) BMD_3215 PF05067 Manganese containing catalase BMD_3216 PF01497 Periplasmic binding protein BMD_3217 PF00005 ABC transporter BMD_3218 PF01032 FecCD transport family BMD_3219 PF01032 FecCD transport family BMD_3220 PF07486 Cell Wall Hydrolase BMD_3223 PF02525 Flavodoxin-like fold BMD_3224 PF10502 Signal peptidase, peptidase S26 BMD_3229 PF08220 DeoR-like helix-turn-helix domain BMD_3229 PF00455 DeoR C terminal sensor domain BMD_3230 PF00266 Aminotransferase class-V BMD_3231 PF13419 Haloacid dehalogenase-like hydrolase BMD_3232 PF00488 MutS domain V BMD_3232 PF01713 Smr domain BMD_3234 PF03591 AzlC protein BMD_3235 PF07883 Cupin domain BMD_3235 PF01381 Helix-turn-helix BMD_3236 PF03741 Integral membrane protein TerC family BMD_3238 PF13407 Periplasmic binding protein domain BMD_3238 PF00356 Bacterial regulatory proteins, lacI family BMD_3239 PF02082 Transcriptional regulator BMD_3245 PF07486 Cell Wall Hydrolase BMD_3246 PF01872 RibD C-terminal domain BMD_3248 PF00258 Flavodoxin BMD_3248 PF00667 FAD binding domain BMD_3248 PF00067 Cytochrome P450 BMD_3248 PF00175 Oxidoreductase NAD-binding domain BMD_3249 PF16295 Tetracyclin repressor-like, C-terminal domain BMD_3249 PF00440 Bacterial regulatory proteins, tetR family BMD_3251 PF05067 Manganese containing catalase BMD_3252 PF12652 CotJB protein BMD_3253 PF11007 Spore coat associated protein JA (CotJA) BMD_3255 PF01810 LysE type translocator BMD_3256 PF12833 Helix-turn-helix domain BMD_3256 PF02311 AraC-like ligand binding domain BMD_3257 PF07730 Histidine kinase BMD_3257 PF13185 GAF domain BMD_3258 PF00196 Bacterial regulatory proteins, luxR family BMD_3258 PF00072 Response regulator receiver domain BMD_3261 PF14040 Deoxyribonuclease NucA/NucB BMD_3265 PF00923 Transaldolase/Fructose-6-phosphate aldolase BMD_3266 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BMD_3266 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BMD_3267 PF02780 Transketolase, C-terminal domain BMD_3267 PF02779 Transketolase, pyrimidine binding domain BMD_3267 PF00456 Transketolase, thiamine diphosphate binding domain BMD_3268 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BMD_3268 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BMD_3272 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_3273 PF00005 ABC transporter BMD_3274 PF02687 FtsX-like permease family BMD_3275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3275 PF00672 HAMP domain BMD_3275 PF00512 His Kinase A (phospho-acceptor) domain BMD_3276 PF00486 Transcriptional regulatory protein, C terminal BMD_3276 PF00072 Response regulator receiver domain BMD_3277 PF02567 Phenazine biosynthesis-like protein BMD_3280 PF13188 PAS domain BMD_3280 PF00512 His Kinase A (phospho-acceptor) domain BMD_3280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3280 PF00989 PAS fold BMD_3280 PF13426 PAS domain BMD_3281 PF13302 Acetyltransferase (GNAT) domain BMD_3282 PF01266 FAD dependent oxidoreductase BMD_3288 PF00248 Aldo/keto reductase family BMD_3291 PF00892 EamA-like transporter family BMD_3292 PF02311 AraC-like ligand binding domain BMD_3292 PF12833 Helix-turn-helix domain BMD_3295 PF00741 Gas vesicle protein BMD_3296 PF05121 Gas vesicle protein K BMD_3296 PF00741 Gas vesicle protein BMD_3297 PF00741 Gas vesicle protein BMD_3301 PF07728 AAA domain (dynein-related subfamily) BMD_3303 PF00741 Gas vesicle protein BMD_3306 PF00741 Gas vesicle protein BMD_3307 PF11181 Heat induced stress protein YflT BMD_3307 PF09557 Domain of unknown function (DUF2382) BMD_3309 PF03466 LysR substrate binding domain BMD_3309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3311 PF00375 Sodium:dicarboxylate symporter family BMD_3312 PF08274 PhnA Zinc-Ribbon BMD_3312 PF03831 PhnA domain BMD_3319 PF12146 Serine aminopeptidase, S33 BMD_3319 PF13026 Protein of unknown function (DUF3887) BMD_3321 PF02910 Fumarate reductase flavoprotein C-term BMD_3321 PF00890 FAD binding domain BMD_3322 PF00528 Binding-protein-dependent transport system inner membrane component BMD_3323 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BMD_3324 PF00005 ABC transporter BMD_3325 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BMD_3326 PF07690 Major Facilitator Superfamily BMD_3327 PF13302 Acetyltransferase (GNAT) domain BMD_3329 PF07687 Peptidase dimerisation domain BMD_3329 PF01546 Peptidase family M20/M25/M40 BMD_3330 PF00296 Luciferase-like monooxygenase BMD_3331 PF00296 Luciferase-like monooxygenase BMD_3332 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_3332 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BMD_3332 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_3333 PF00107 Zinc-binding dehydrogenase BMD_3333 PF08240 Alcohol dehydrogenase GroES-like domain BMD_3334 PF00486 Transcriptional regulatory protein, C terminal BMD_3334 PF00072 Response regulator receiver domain BMD_3335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3336 PF00005 ABC transporter BMD_3337 PF02687 FtsX-like permease family BMD_3339 PF01738 Dienelactone hydrolase family BMD_3340 PF00155 Aminotransferase class I and II BMD_3342 PF01925 Sulfite exporter TauE/SafE BMD_3343 PF01206 Sulfurtransferase TusA BMD_3344 PF00753 Metallo-beta-lactamase superfamily BMD_3344 PF00581 Rhodanese-like domain BMD_3345 PF00581 Rhodanese-like domain BMD_3345 PF01206 Sulfurtransferase TusA BMD_3348 PF13686 DsrE/DsrF/DrsH-like family BMD_3349 PF01206 Sulfurtransferase TusA BMD_3350 PF02583 Metal-sensitive transcriptional repressor BMD_3354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3354 PF03466 LysR substrate binding domain BMD_3358 PF00392 Bacterial regulatory proteins, gntR family BMD_3358 PF07702 UTRA domain BMD_3359 PF00232 Glycosyl hydrolase family 1 BMD_3361 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BMD_3362 PF05901 Excalibur calcium-binding domain BMD_3364 PF07883 Cupin domain BMD_3365 PF01810 LysE type translocator BMD_3366 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BMD_3368 PF03466 LysR substrate binding domain BMD_3368 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3369 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_3371 PF12706 Beta-lactamase superfamily domain BMD_3373 PF13170 Protein of unknown function (DUF4003) BMD_3375 PF00881 Nitroreductase family BMD_3376 PF00171 Aldehyde dehydrogenase family BMD_3379 PF04011 LemA family BMD_3380 PF01522 Polysaccharide deacetylase BMD_3380 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain BMD_3381 PF00535 Glycosyl transferase family 2 BMD_3381 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 BMD_3383 PF01638 HxlR-like helix-turn-helix BMD_3384 PF02525 Flavodoxin-like fold BMD_3385 PF02525 Flavodoxin-like fold BMD_3386 PF13302 Acetyltransferase (GNAT) domain BMD_3389 PF00264 Common central domain of tyrosinase BMD_3391 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_3392 PF04299 Putative FMN-binding domain BMD_3395 PF00561 alpha/beta hydrolase fold BMD_3398 PF07308 Protein of unknown function (DUF1456) BMD_3400 PF06874 Firmicute fructose-1,6-bisphosphatase BMD_3401 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_3401 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_3402 PF00313 'Cold-shock' DNA-binding domain BMD_3404 PF00313 'Cold-shock' DNA-binding domain BMD_3405 PF07690 Major Facilitator Superfamily BMD_3406 PF00291 Pyridoxal-phosphate dependent enzyme BMD_3407 PF00375 Sodium:dicarboxylate symporter family BMD_3410 PF07690 Major Facilitator Superfamily BMD_3415 PF02126 Phosphotriesterase family BMD_3416 PF00916 Sulfate permease family BMD_3416 PF01740 STAS domain BMD_3420 PF01969 Protein of unknown function DUF111 BMD_3421 PF00731 AIR carboxylase BMD_3422 PF02540 NAD synthase BMD_3423 PF00106 short chain dehydrogenase BMD_3425 PF02614 Glucuronate isomerase BMD_3426 PF00480 ROK family BMD_3430 PF00005 ABC transporter BMD_3438 PF05139 Erythromycin esterase BMD_3441 PF03992 Antibiotic biosynthesis monooxygenase BMD_3442 PF00672 HAMP domain BMD_3442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3442 PF13426 PAS domain BMD_3442 PF00512 His Kinase A (phospho-acceptor) domain BMD_3443 PF00486 Transcriptional regulatory protein, C terminal BMD_3443 PF00072 Response regulator receiver domain BMD_3446 PF00005 ABC transporter BMD_3449 PF11188 Protein of unknown function (DUF2975) BMD_3450 PF11188 Protein of unknown function (DUF2975) BMD_3451 PF13443 Cro/C1-type HTH DNA-binding domain BMD_3453 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3453 PF03466 LysR substrate binding domain BMD_3456 PF01261 Xylose isomerase-like TIM barrel BMD_3457 PF02311 AraC-like ligand binding domain BMD_3457 PF12833 Helix-turn-helix domain BMD_3459 PF00356 Bacterial regulatory proteins, lacI family BMD_3460 PF01261 Xylose isomerase-like TIM barrel BMD_3461 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_3461 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_3463 PF00171 Aldehyde dehydrogenase family BMD_3464 PF00294 pfkB family carbohydrate kinase BMD_3465 PF04962 KduI/IolB family BMD_3466 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_3466 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_3466 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_3467 PF08220 DeoR-like helix-turn-helix domain BMD_3467 PF00455 DeoR C terminal sensor domain BMD_3468 PF01116 Fructose-bisphosphate aldolase class-II BMD_3469 PF01261 Xylose isomerase-like TIM barrel BMD_3470 PF00083 Sugar (and other) transporter BMD_3471 PF01261 Xylose isomerase-like TIM barrel BMD_3472 PF00381 PTS HPr component phosphorylation site BMD_3473 PF08240 Alcohol dehydrogenase GroES-like domain BMD_3473 PF00107 Zinc-binding dehydrogenase BMD_3474 PF13411 MerR HTH family regulatory protein BMD_3477 PF07883 Cupin domain BMD_3481 PF01740 STAS domain BMD_3481 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_3482 PF00313 'Cold-shock' DNA-binding domain BMD_3485 PF02557 D-alanyl-D-alanine carboxypeptidase BMD_3490 PF01544 CorA-like Mg2+ transporter protein BMD_3491 PF01740 STAS domain BMD_3500 PF08713 DNA alkylation repair enzyme BMD_3501 PF00583 Acetyltransferase (GNAT) family BMD_3503 PF03845 Spore germination protein BMD_3505 PF07690 Major Facilitator Superfamily BMD_3506 PF00391 PEP-utilising enzyme, mobile domain BMD_3506 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BMD_3507 PF00391 PEP-utilising enzyme, mobile domain BMD_3507 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BMD_3508 PF07729 FCD domain BMD_3508 PF00392 Bacterial regulatory proteins, gntR family BMD_3513 PF06912 Protein of unknown function (DUF1275) BMD_3515 PF08220 DeoR-like helix-turn-helix domain BMD_3515 PF00455 DeoR C terminal sensor domain BMD_3518 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BMD_3518 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BMD_3520 PF01810 LysE type translocator BMD_3527 PF01717 Cobalamin-independent synthase, Catalytic domain BMD_3527 PF08267 Cobalamin-independent synthase, N-terminal domain BMD_3529 PF00083 Sugar (and other) transporter BMD_3530 PF02610 L-arabinose isomerase BMD_3530 PF11762 L-arabinose isomerase C-terminal domain BMD_3531 PF00596 Class II Aldolase and Adducin N-terminal domain BMD_3532 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BMD_3532 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BMD_3533 PF00392 Bacterial regulatory proteins, gntR family BMD_3534 PF01966 HD domain BMD_3536 PF07670 Nucleoside recognition BMD_3536 PF07664 Ferrous iron transport protein B C terminus BMD_3536 PF17910 FeoB cytosolic helical domain BMD_3536 PF02421 Ferrous iron transport protein B BMD_3537 PF02421 Ferrous iron transport protein B BMD_3537 PF17910 FeoB cytosolic helical domain BMD_3537 PF07664 Ferrous iron transport protein B C terminus BMD_3537 PF07670 Nucleoside recognition BMD_3538 PF07664 Ferrous iron transport protein B C terminus BMD_3538 PF17910 FeoB cytosolic helical domain BMD_3538 PF04023 FeoA domain BMD_3538 PF07670 Nucleoside recognition BMD_3538 PF02421 Ferrous iron transport protein B BMD_3541 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_3542 PF13115 YtkA-like BMD_3544 PF01047 MarR family BMD_3550 PF01476 LysM domain BMD_3550 PF00877 NlpC/P60 family BMD_3551 PF03473 MOSC domain BMD_3551 PF03475 3-alpha domain BMD_3552 PF07662 Na+ dependent nucleoside transporter C-terminus BMD_3552 PF01773 Na+ dependent nucleoside transporter N-terminus BMD_3560 PF08141 Small acid-soluble spore protein H family BMD_3564 PF11611 Domain of unknown function (DUF4352) BMD_3565 PF00440 Bacterial regulatory proteins, tetR family BMD_3566 PF00266 Aminotransferase class-V BMD_3567 PF00324 Amino acid permease BMD_3568 PF03301 Tryptophan 2,3-dioxygenase BMD_3569 PF04199 Putative cyclase BMD_3570 PF01361 Tautomerase enzyme BMD_3572 PF00682 HMGL-like BMD_3572 PF07836 DmpG-like communication domain BMD_3573 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation BMD_3573 PF01118 Semialdehyde dehydrogenase, NAD binding domain BMD_3574 PF01557 Fumarylacetoacetate (FAA) hydrolase family BMD_3575 PF00171 Aldehyde dehydrogenase family BMD_3576 PF01042 Endoribonuclease L-PSP BMD_3578 PF06052 3-hydroxyanthranilic acid dioxygenase BMD_3579 PF03358 NADPH-dependent FMN reductase BMD_3580 PF06574 FAD synthetase BMD_3581 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal BMD_3581 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal BMD_3585 PF13411 MerR HTH family regulatory protein BMD_3586 PF00294 pfkB family carbohydrate kinase BMD_3588 PF08240 Alcohol dehydrogenase GroES-like domain BMD_3588 PF00107 Zinc-binding dehydrogenase BMD_3589 PF00931 NB-ARC domain BMD_3589 PF13176 Tetratricopeptide repeat BMD_3595 PF08818 Domain of unknown function (DU1801) BMD_3596 PF08818 Domain of unknown function (DU1801) BMD_3598 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3598 PF03466 LysR substrate binding domain BMD_3601 PF01544 CorA-like Mg2+ transporter protein BMD_3602 PF02386 Cation transport protein BMD_3604 PF02868 Thermolysin metallopeptidase, alpha-helical domain BMD_3604 PF07504 Fungalysin/Thermolysin Propeptide Motif BMD_3604 PF01447 Thermolysin metallopeptidase, catalytic domain BMD_3604 PF03413 Peptidase propeptide and YPEB domain BMD_3605 PF01220 Dehydroquinase class II BMD_3607 PF08546 Ketopantoate reductase PanE/ApbA C terminal BMD_3607 PF02558 Ketopantoate reductase PanE/ApbA BMD_3608 PF01575 MaoC like domain BMD_3609 PF01144 Coenzyme A transferase BMD_3610 PF08501 Shikimate dehydrogenase substrate binding domain BMD_3610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BMD_3611 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3611 PF03466 LysR substrate binding domain BMD_3612 PF00107 Zinc-binding dehydrogenase BMD_3612 PF08240 Alcohol dehydrogenase GroES-like domain BMD_3613 PF01022 Bacterial regulatory protein, arsR family BMD_3614 PF01494 FAD binding domain BMD_3619 PF07690 Major Facilitator Superfamily BMD_3620 PF01261 Xylose isomerase-like TIM barrel BMD_3621 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_3621 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_3622 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BMD_3622 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BMD_3623 PF01261 Xylose isomerase-like TIM barrel BMD_3624 PF00356 Bacterial regulatory proteins, lacI family BMD_3625 PF04397 LytTr DNA-binding domain BMD_3625 PF00072 Response regulator receiver domain BMD_3626 PF00072 Response regulator receiver domain BMD_3626 PF09308 LuxQ, periplasmic BMD_3626 PF00512 His Kinase A (phospho-acceptor) domain BMD_3626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3627 PF01451 Low molecular weight phosphotyrosine protein phosphatase BMD_3629 PF07875 Coat F domain BMD_3630 PF00107 Zinc-binding dehydrogenase BMD_3630 PF08240 Alcohol dehydrogenase GroES-like domain BMD_3630 PF13823 Alcohol dehydrogenase GroES-associated BMD_3632 PF07875 Coat F domain BMD_3633 PF01740 STAS domain BMD_3633 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_3634 PF01740 STAS domain BMD_3634 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BMD_3635 PF01740 STAS domain BMD_3640 PF14552 Tautomerase enzyme BMD_3641 PF03466 LysR substrate binding domain BMD_3641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3649 PF00561 alpha/beta hydrolase fold BMD_3651 PF00857 Isochorismatase family BMD_3652 PF03358 NADPH-dependent FMN reductase BMD_3653 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_3654 PF07681 DoxX BMD_3656 PF00056 lactate/malate dehydrogenase, NAD binding domain BMD_3656 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BMD_3658 PF03319 Ethanolamine utilisation protein EutN/carboxysome BMD_3660 PF06130 Phosphate propanoyltransferase BMD_3661 PF00936 BMC domain BMD_3662 PF00465 Iron-containing alcohol dehydrogenase BMD_3662 PF00171 Aldehyde dehydrogenase family BMD_3663 PF00936 BMC domain BMD_3664 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BMD_3665 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BMD_3666 PF06277 Ethanolamine utilisation protein EutA BMD_3667 PF10662 Ethanolamine utilisation - propanediol utilisation BMD_3668 PF00936 BMC domain BMD_3669 PF04346 Ethanolamine utilisation protein, EutH BMD_3670 PF03861 ANTAR domain BMD_3670 PF00072 Response regulator receiver domain BMD_3671 PF12282 Signal transduction histidine kinase BMD_3671 PF07568 Histidine kinase BMD_3671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3676 PF00440 Bacterial regulatory proteins, tetR family BMD_3677 PF00893 Small Multidrug Resistance protein BMD_3678 PF17314 Family of unknown function (DUF5360) BMD_3681 PF03737 Aldolase/RraA BMD_3683 PF03600 Citrate transporter BMD_3685 PF07690 Major Facilitator Superfamily BMD_3687 PF07690 Major Facilitator Superfamily BMD_3688 PF00440 Bacterial regulatory proteins, tetR family BMD_3693 PF00155 Aminotransferase class I and II BMD_3694 PF00561 alpha/beta hydrolase fold BMD_3695 PF13649 Methyltransferase domain BMD_3696 PF02378 Phosphotransferase system, EIIC BMD_3696 PF00367 phosphotransferase system, EIIB BMD_3697 PF13580 SIS domain BMD_3698 PF11495 Archaeal transcriptional regulator TrmB BMD_3698 PF01978 Sugar-specific transcriptional regulator TrmB BMD_3699 PF00892 EamA-like transporter family BMD_3700 PF00465 Iron-containing alcohol dehydrogenase BMD_3703 PF04657 Putative inner membrane exporter, YdcZ BMD_3704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3704 PF03466 LysR substrate binding domain BMD_3706 PF00892 EamA-like transporter family BMD_3707 PF00155 Aminotransferase class I and II BMD_3708 PF00206 Lyase BMD_3708 PF10415 Fumarase C C-terminus BMD_3709 PF07486 Cell Wall Hydrolase BMD_3711 PF04226 Transglycosylase associated protein BMD_3714 PF00106 short chain dehydrogenase BMD_3715 PF00248 Aldo/keto reductase family BMD_3716 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_3718 PF07690 Major Facilitator Superfamily BMD_3721 PF00367 phosphotransferase system, EIIB BMD_3721 PF02378 Phosphotransferase system, EIIC BMD_3723 PF01494 FAD binding domain BMD_3728 PF02517 CPBP intramembrane metalloprotease BMD_3733 PF00710 Asparaginase, N-terminal BMD_3733 PF17763 Glutaminase/Asparaginase C-terminal domain BMD_3737 PF03551 Transcriptional regulator PadR-like family BMD_3739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3739 PF03466 LysR substrate binding domain BMD_3741 PF07690 Major Facilitator Superfamily BMD_3742 PF14145 YrhK-like protein BMD_3743 PF11181 Heat induced stress protein YflT BMD_3743 PF09557 Domain of unknown function (DUF2382) BMD_3744 PF10710 Protein of unknown function (DUF2512) BMD_3745 PF03949 Malic enzyme, NAD binding domain BMD_3745 PF00390 Malic enzyme, N-terminal domain BMD_3755 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_3757 PF01674 Lipase (class 2) BMD_3758 PF00251 Glycosyl hydrolases family 32 N-terminal domain BMD_3758 PF08244 Glycosyl hydrolases family 32 C terminal BMD_3760 PF00356 Bacterial regulatory proteins, lacI family BMD_3761 PF01306 LacY proton/sugar symporter BMD_3767 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_3768 PF11553 Protein of unknown function (DUF3231) BMD_3772 PF12867 DinB superfamily BMD_3775 PF12833 Helix-turn-helix domain BMD_3775 PF06445 GyrI-like small molecule binding domain BMD_3778 PF06803 Protein of unknown function (DUF1232) BMD_3781 PF03454 MoeA C-terminal region (domain IV) BMD_3781 PF03453 MoeA N-terminal region (domain I and II) BMD_3781 PF00994 Probable molybdopterin binding domain BMD_3782 PF01967 MoaC family BMD_3783 PF00994 Probable molybdopterin binding domain BMD_3784 PF00174 Oxidoreductase molybdopterin binding domain BMD_3786 PF14667 Polysaccharide biosynthesis C-terminal domain BMD_3786 PF01943 Polysaccharide biosynthesis protein BMD_3787 PF14172 Domain of unknown function (DUF4309) BMD_3790 PF04303 PrpF protein BMD_3791 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3791 PF03466 LysR substrate binding domain BMD_3792 PF03600 Citrate transporter BMD_3797 PF01027 Inhibitor of apoptosis-promoting Bax1 BMD_3798 PF00574 Clp protease BMD_3801 PF00877 NlpC/P60 family BMD_3802 PF07690 Major Facilitator Superfamily BMD_3803 PF01047 MarR family BMD_3805 PF08281 Sigma-70, region 4 BMD_3805 PF04542 Sigma-70 region 2 BMD_3807 PF00313 'Cold-shock' DNA-binding domain BMD_3809 PF09680 Family of unknown function BMD_3811 PF00324 Amino acid permease BMD_3812 PF00324 Amino acid permease BMD_3813 PF00171 Aldehyde dehydrogenase family BMD_3814 PF01619 Proline dehydrogenase BMD_3815 PF09234 Domain of unknown function (DUF1963) BMD_3819 PF07454 Stage II sporulation protein P (SpoIIP) BMD_3821 PF00563 EAL domain BMD_3821 PF03707 Bacterial signalling protein N terminal repeat BMD_3821 PF00990 Diguanylate cyclase, GGDEF domain BMD_3822 PF01522 Polysaccharide deacetylase BMD_3824 PF00535 Glycosyl transferase family 2 BMD_3825 PF00210 Ferritin-like domain BMD_3830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BMD_3831 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BMD_3832 PF10057 Uncharacterized conserved protein (DUF2294) BMD_3833 PF06146 Phosphate-starvation-inducible E BMD_3834 PF00248 Aldo/keto reductase family BMD_3843 PF13411 MerR HTH family regulatory protein BMD_3844 PF00248 Aldo/keto reductase family BMD_3846 PF13411 MerR HTH family regulatory protein BMD_3852 PF00251 Glycosyl hydrolases family 32 N-terminal domain BMD_3852 PF08244 Glycosyl hydrolases family 32 C terminal BMD_3853 PF12732 YtxH-like protein BMD_3858 PF01734 Patatin-like phospholipase BMD_3859 PF02687 FtsX-like permease family BMD_3860 PF00005 ABC transporter BMD_3862 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3863 PF00486 Transcriptional regulatory protein, C terminal BMD_3863 PF00072 Response regulator receiver domain BMD_3866 PF02583 Metal-sensitive transcriptional repressor BMD_3867 PF14040 Deoxyribonuclease NucA/NucB BMD_3868 PF11033 Competence protein J (ComJ) BMD_3869 PF13538 UvrD-like helicase C-terminal domain BMD_3870 PF00378 Enoyl-CoA hydratase/isomerase BMD_3871 PF01638 HxlR-like helix-turn-helix BMD_3874 PF00067 Cytochrome P450 BMD_3875 PF07681 DoxX BMD_3876 PF00535 Glycosyl transferase family 2 BMD_3877 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BMD_3877 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BMD_3877 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BMD_3878 PF01501 Glycosyl transferase family 8 BMD_3878 PF00535 Glycosyl transferase family 2 BMD_3881 PF01476 LysM domain BMD_3881 PF00877 NlpC/P60 family BMD_3882 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BMD_3883 PF01047 MarR family BMD_3884 PF13739 Deacetylase PdaC BMD_3884 PF11738 Protein of unknown function (DUF3298) BMD_3885 PF08281 Sigma-70, region 4 BMD_3885 PF04542 Sigma-70 region 2 BMD_3886 PF11738 Protein of unknown function (DUF3298) BMD_3886 PF13739 Deacetylase PdaC BMD_3886 PF01522 Polysaccharide deacetylase BMD_3887 PF03845 Spore germination protein BMD_3890 PF00324 Amino acid permease BMD_3891 PF00491 Arginase family BMD_3894 PF02386 Cation transport protein BMD_3895 PF02254 TrkA-N domain BMD_3895 PF02080 TrkA-C domain BMD_3897 PF01037 Lrp/AsnC ligand binding domain BMD_3899 PF13180 PDZ domain BMD_3900 PF00486 Transcriptional regulatory protein, C terminal BMD_3900 PF00072 Response regulator receiver domain BMD_3901 PF00672 HAMP domain BMD_3901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3901 PF00512 His Kinase A (phospho-acceptor) domain BMD_3902 PF00291 Pyridoxal-phosphate dependent enzyme BMD_3903 PF03061 Thioesterase superfamily BMD_3904 PF07729 FCD domain BMD_3904 PF00392 Bacterial regulatory proteins, gntR family BMD_3905 PF13536 Putative multidrug resistance efflux transporter BMD_3906 PF05076 Suppressor of fused protein (SUFU) BMD_3907 PF01321 Creatinase/Prolidase N-terminal domain BMD_3907 PF00557 Metallopeptidase family M24 BMD_3909 PF03816 Cell envelope-related transcriptional attenuator domain BMD_3911 PF02525 Flavodoxin-like fold BMD_3912 PF09529 Integral membrane protein (intg_mem_TP0381) BMD_3914 PF00528 Binding-protein-dependent transport system inner membrane component BMD_3915 PF00005 ABC transporter BMD_3915 PF00571 CBS domain BMD_3918 PF07690 Major Facilitator Superfamily BMD_3919 PF00440 Bacterial regulatory proteins, tetR family BMD_3920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_3920 PF00512 His Kinase A (phospho-acceptor) domain BMD_3921 PF01925 Sulfite exporter TauE/SafE BMD_3922 PF00375 Sodium:dicarboxylate symporter family BMD_3924 PF03060 Nitronate monooxygenase BMD_3929 PF03816 Cell envelope-related transcriptional attenuator domain BMD_3930 PF00884 Sulfatase BMD_3932 PF00892 EamA-like transporter family BMD_3933 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BMD_3936 PF00324 Amino acid permease BMD_3937 PF05684 Protein of unknown function (DUF819) BMD_3938 PF00440 Bacterial regulatory proteins, tetR family BMD_3940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_3940 PF03466 LysR substrate binding domain BMD_3941 PF01925 Sulfite exporter TauE/SafE BMD_3942 PF00583 Acetyltransferase (GNAT) family BMD_3943 PF13460 NAD(P)H-binding BMD_3944 PF02308 MgtC family BMD_3945 PF01209 ubiE/COQ5 methyltransferase family BMD_3946 PF05908 Poly-gamma-glutamate hydrolase BMD_3948 PF00392 Bacterial regulatory proteins, gntR family BMD_3948 PF00155 Aminotransferase class I and II BMD_3951 PF00324 Amino acid permease BMD_3956 PF00535 Glycosyl transferase family 2 BMD_3962 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_3966 PF01810 LysE type translocator BMD_3967 PF01235 Sodium:alanine symporter family BMD_3969 PF01758 Sodium Bile acid symporter family BMD_3970 PF00924 Mechanosensitive ion channel BMD_3971 PF00188 Cysteine-rich secretory protein family BMD_3972 PF00571 CBS domain BMD_3972 PF03471 Transporter associated domain BMD_3972 PF01595 Cyclin M transmembrane N-terminal domain BMD_3974 PF02146 Sir2 family BMD_3975 PF00582 Universal stress protein family BMD_3977 PF00365 Phosphofructokinase BMD_3978 PF00877 NlpC/P60 family BMD_3978 PF01476 LysM domain BMD_3982 PF01894 Uncharacterised protein family UPF0047 BMD_3983 PF03323 Bacillus/Clostridium GerA spore germination protein BMD_3984 PF03845 Spore germination protein BMD_3985 PF05504 Spore germination B3/ GerAC like, C-terminal BMD_3989 PF00005 ABC transporter BMD_3992 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BMD_3992 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_3995 PF03009 Glycerophosphoryl diester phosphodiesterase family BMD_3997 PF00005 ABC transporter BMD_4002 PF02378 Phosphotransferase system, EIIC BMD_4002 PF00367 phosphotransferase system, EIIB BMD_4003 PF00874 PRD domain BMD_4003 PF03123 CAT RNA binding domain BMD_4004 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BMD_4005 PF02525 Flavodoxin-like fold BMD_4008 PF01098 Cell cycle protein BMD_4009 PF01740 STAS domain BMD_4009 PF00916 Sulfate permease family BMD_4010 PF01048 Phosphorylase superfamily BMD_4012 PF14191 YodL-like BMD_4013 PF01569 PAP2 superfamily BMD_4015 PF07070 SpoOM protein BMD_4016 PF00069 Protein kinase domain BMD_4016 PF03793 PASTA domain BMD_4018 PF10720 Protein of unknown function (DUF2515) BMD_4019 PF14162 YozD-like protein BMD_4021 PF06855 YozE SAM-like fold BMD_4022 PF01757 Acyltransferase family BMD_4023 PF01063 Amino-transferase class IV BMD_4024 PF14122 YokU-like protein, putative antitoxin BMD_4025 PF12544 Lysine-2,3-aminomutase BMD_4026 PF00583 Acetyltransferase (GNAT) family BMD_4027 PF07687 Peptidase dimerisation domain BMD_4027 PF01546 Peptidase family M20/M25/M40 BMD_4028 PF01144 Coenzyme A transferase BMD_4029 PF01144 Coenzyme A transferase BMD_4030 PF00202 Aminotransferase class-III BMD_4031 PF00375 Sodium:dicarboxylate symporter family BMD_4033 PF08447 PAS fold BMD_4033 PF00989 PAS fold BMD_4033 PF00512 His Kinase A (phospho-acceptor) domain BMD_4033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_4038 PF13472 GDSL-like Lipase/Acylhydrolase family BMD_4039 PF02630 SCO1/SenC BMD_4040 PF00512 His Kinase A (phospho-acceptor) domain BMD_4040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_4041 PF02645 Uncharacterised protein, DegV family COG1307 BMD_4042 PF10751 Protein of unknown function (DUF2535) BMD_4043 PF00291 Pyridoxal-phosphate dependent enzyme BMD_4043 PF00585 C-terminal regulatory domain of Threonine dehydratase BMD_4044 PF00186 Dihydrofolate reductase BMD_4045 PF00303 Thymidylate synthase BMD_4046 PF01842 ACT domain BMD_4046 PF00551 Formyl transferase BMD_4048 PF04183 IucA / IucC family BMD_4048 PF06276 Ferric iron reductase FhuF-like transporter BMD_4050 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BMD_4052 PF06276 Ferric iron reductase FhuF-like transporter BMD_4052 PF04183 IucA / IucC family BMD_4053 PF00282 Pyridoxal-dependent decarboxylase conserved domain BMD_4054 PF00202 Aminotransferase class-III BMD_4057 PF03441 FAD binding domain of DNA photolyase BMD_4057 PF00875 DNA photolyase BMD_4058 PF00512 His Kinase A (phospho-acceptor) domain BMD_4058 PF00989 PAS fold BMD_4058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_4061 PF00171 Aldehyde dehydrogenase family BMD_4062 PF00158 Sigma-54 interaction domain BMD_4063 PF00202 Aminotransferase class-III BMD_4064 PF11084 Protein of unknown function (DUF2621) BMD_4065 PF07301 Protein of unknown function (DUF1453) BMD_4066 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BMD_4067 PF02683 Cytochrome C biogenesis protein transmembrane region BMD_4068 PF09388 Spo0E like sporulation regulatory protein BMD_4069 PF00664 ABC transporter transmembrane region BMD_4069 PF00005 ABC transporter BMD_4070 PF00005 ABC transporter BMD_4070 PF00664 ABC transporter transmembrane region BMD_4071 PF03672 Uncharacterised protein family (UPF0154) BMD_4072 PF10747 Sporulation inhibitor of replication protein SirA BMD_4073 PF02779 Transketolase, pyrimidine binding domain BMD_4073 PF02780 Transketolase, C-terminal domain BMD_4073 PF00456 Transketolase, thiamine diphosphate binding domain BMD_4074 PF05979 Bacterial protein of unknown function (DUF896) BMD_4075 PF00239 Resolvase, N terminal domain BMD_4076 PF01476 LysM domain BMD_4077 PF00717 Peptidase S24-like BMD_4077 PF01726 LexA DNA binding domain BMD_4081 PF00535 Glycosyl transferase family 2 BMD_4082 PF01545 Cation efflux family BMD_4082 PF16916 Dimerisation domain of Zinc Transporter BMD_4083 PF13520 Amino acid permease BMD_4084 PF05036 Sporulation related domain BMD_4084 PF01520 N-acetylmuramoyl-L-alanine amidase BMD_4086 PF03951 Glutamine synthetase, beta-Grasp domain BMD_4086 PF00120 Glutamine synthetase, catalytic domain BMD_4087 PF13411 MerR HTH family regulatory protein BMD_4088 PF06838 Methionine gamma-lyase BMD_4089 PF16360 GTP-binding GTPase Middle Region BMD_4089 PF01926 50S ribosome-binding GTPase BMD_4089 PF13167 GTP-binding GTPase N-terminal BMD_4090 PF03458 UPF0126 domain BMD_4091 PF17866 AAA lid domain BMD_4091 PF00004 ATPase family associated with various cellular activities (AAA) BMD_4092 PF17209 Hfq protein BMD_4094 PF01119 DNA mismatch repair protein, C-terminal domain BMD_4094 PF08676 MutL C terminal dimerisation domain BMD_4095 PF05190 MutS family domain IV BMD_4095 PF05188 MutS domain II BMD_4095 PF05192 MutS domain III BMD_4095 PF01624 MutS domain I BMD_4095 PF00488 MutS domain V BMD_4096 PF13520 Amino acid permease BMD_4097 PF10628 Outer spore coat protein E (CotE) BMD_4098 PF06133 Control of competence regulator ComK, YlbF/YmcA BMD_4099 PF04055 Radical SAM superfamily BMD_4099 PF00919 Uncharacterized protein family UPF0004 BMD_4099 PF01938 TRAM domain BMD_4100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_4101 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BMD_4101 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BMD_4101 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BMD_4103 PF04232 Stage V sporulation protein S (SpoVS) BMD_4104 PF13277 YmdB-like protein BMD_4105 PF12072 Domain of unknown function (DUF3552) BMD_4105 PF01966 HD domain BMD_4105 PF00013 KH domain BMD_4106 PF00154 recA bacterial DNA recombination protein BMD_4107 PF18146 Damage-inducible protein CinA KH domain BMD_4107 PF00994 Probable molybdopterin binding domain BMD_4107 PF02464 Competence-damaged protein BMD_4108 PF01066 CDP-alcohol phosphatidyltransferase BMD_4109 PF13464 Domain of unknown function (DUF4115) BMD_4110 PF11868 Protein of unknown function (DUF3388) BMD_4111 PF11588 Protein of unknown function (DUF3243) BMD_4113 PF05193 Peptidase M16 inactive domain BMD_4113 PF00675 Insulinase (Peptidase family M16) BMD_4114 PF05193 Peptidase M16 inactive domain BMD_4119 PF07702 UTRA domain BMD_4119 PF00392 Bacterial regulatory proteins, gntR family BMD_4120 PF01580 FtsK/SpoIIIE family BMD_4120 PF17854 FtsK alpha domain BMD_4120 PF09397 Ftsk gamma domain BMD_4121 PF14035 YlzJ-like protein BMD_4122 PF00574 Clp protease BMD_4123 PF00753 Metallo-beta-lactamase superfamily BMD_4123 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BMD_4123 PF17770 Ribonuclease J C-terminal domain BMD_4124 PF00701 Dihydrodipicolinate synthetase family BMD_4125 PF00696 Amino acid kinase family BMD_4125 PF13840 ACT domain BMD_4126 PF02774 Semialdehyde dehydrogenase, dimerisation domain BMD_4126 PF01118 Semialdehyde dehydrogenase, NAD binding domain BMD_4127 PF02441 Flavoprotein BMD_4128 PF16924 Dipicolinate synthase subunit A N-terminal domain BMD_4128 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BMD_4129 PF05239 PRC-barrel domain BMD_4130 PF00675 Insulinase (Peptidase family M16) BMD_4130 PF05193 Peptidase M16 inactive domain BMD_4131 PF01522 Polysaccharide deacetylase BMD_4132 PF00575 S1 RNA binding domain BMD_4132 PF03725 3' exoribonuclease family, domain 2 BMD_4132 PF00013 KH domain BMD_4132 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BMD_4132 PF01138 3' exoribonuclease family, domain 1 BMD_4133 PF00312 Ribosomal protein S15 BMD_4134 PF01687 Riboflavin kinase BMD_4134 PF06574 FAD synthetase BMD_4135 PF16198 tRNA pseudouridylate synthase B C-terminal domain BMD_4135 PF01509 TruB family pseudouridylate synthase (N terminal domain) BMD_4136 PF02033 Ribosome-binding factor A BMD_4137 PF04456 Protein of unknown function (DUF503) BMD_4138 PF00009 Elongation factor Tu GTP binding domain BMD_4138 PF11987 Translation-initiation factor 2 BMD_4138 PF04760 Translation initiation factor IF-2, N-terminal region BMD_4139 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BMD_4140 PF04296 Protein of unknown function (DUF448) BMD_4141 PF00575 S1 RNA binding domain BMD_4141 PF08529 NusA N-terminal domain BMD_4141 PF13184 NusA-like KH domain BMD_4142 PF17384 RimP C-terminal SH3 domain BMD_4142 PF02576 RimP N-terminal domain BMD_4143 PF02811 PHP domain BMD_4143 PF00929 Exonuclease BMD_4143 PF11490 DNA polymerase III polC-type N-terminus II BMD_4143 PF07733 Bacterial DNA polymerase III alpha NTPase domain BMD_4143 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BMD_4143 PF14579 Helix-hairpin-helix motif BMD_4143 PF14480 DNA polymerase III polC-type N-terminus I BMD_4144 PF04073 Aminoacyl-tRNA editing domain BMD_4144 PF03129 Anticodon binding domain BMD_4144 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BMD_4145 PF13180 PDZ domain BMD_4145 PF02163 Peptidase family M50 BMD_4146 PF13288 DXP reductoisomerase C-terminal domain BMD_4146 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BMD_4146 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BMD_4148 PF01255 Putative undecaprenyl diphosphate synthase BMD_4149 PF01765 Ribosome recycling factor BMD_4150 PF00696 Amino acid kinase family BMD_4151 PF00889 Elongation factor TS BMD_4152 PF00318 Ribosomal protein S2 BMD_4154 PF04539 Sigma-70 region 3 BMD_4154 PF04545 Sigma-70, region 4 BMD_4154 PF04542 Sigma-70 region 2 BMD_4155 PF03975 CheD chemotactic sensory transduction BMD_4156 PF01584 CheW-like domain BMD_4157 PF01627 Hpt domain BMD_4157 PF02895 Signal transducing histidine kinase, homodimeric domain BMD_4157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_4157 PF07194 P2 response regulator binding domain BMD_4157 PF01584 CheW-like domain BMD_4158 PF01339 CheB methylesterase BMD_4158 PF00072 Response regulator receiver domain BMD_4159 PF10609 NUBPL iron-transfer P-loop NTPase BMD_4160 PF00448 SRP54-type protein, GTPase domain BMD_4161 PF00771 FHIPEP family BMD_4162 PF01312 FlhB HrpN YscU SpaS Family BMD_4163 PF01311 Bacterial export proteins, family 1 BMD_4164 PF01313 Bacterial export proteins, family 3 BMD_4165 PF00813 FliP family BMD_4166 PF04347 Flagellar biosynthesis protein, FliO BMD_4167 PF00072 Response regulator receiver domain BMD_4168 PF04509 CheC-like family BMD_4168 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BMD_4169 PF02154 Flagellar motor switch protein FliM BMD_4169 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BMD_4171 PF06289 Flagellar and Swarming motility proteins BMD_4172 PF00460 Flagella basal body rod protein BMD_4172 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BMD_4173 PF03963 Flagellar hook capping protein - N-terminal region BMD_4176 PF02050 Flagellar FliJ protein BMD_4177 PF02874 ATP synthase alpha/beta family, beta-barrel domain BMD_4177 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BMD_4177 PF18269 T3SS EscN ATPase C-terminal domain BMD_4178 PF02108 Flagellar assembly protein FliH BMD_4179 PF14842 FliG N-terminal domain BMD_4179 PF14841 FliG middle domain BMD_4179 PF01706 FliG C-terminal domain BMD_4180 PF08345 Flagellar M-ring protein C-terminal BMD_4180 PF01514 Secretory protein of YscJ/FliF family BMD_4181 PF02049 Flagellar hook-basal body complex protein FliE BMD_4182 PF00460 Flagella basal body rod protein BMD_4182 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BMD_4183 PF00460 Flagella basal body rod protein BMD_4184 PF08222 CodY helix-turn-helix domain BMD_4184 PF06018 CodY GAF-like domain BMD_4185 PF07724 AAA domain (Cdc48 subfamily) BMD_4185 PF10431 C-terminal, D2-small domain, of ClpB protein BMD_4185 PF00004 ATPase family associated with various cellular activities (AAA) BMD_4186 PF00227 Proteasome subunit BMD_4187 PF00589 Phage integrase family BMD_4187 PF02899 Phage integrase, N-terminal SAM-like domain BMD_4189 PF01131 DNA topoisomerase BMD_4189 PF01751 Toprim domain BMD_4189 PF01396 Topoisomerase DNA binding C4 zinc finger BMD_4190 PF02481 DNA recombination-mediator protein A BMD_4191 PF00549 CoA-ligase BMD_4191 PF02629 CoA binding domain BMD_4192 PF00549 CoA-ligase BMD_4192 PF08442 ATP-grasp domain BMD_4193 PF01351 Ribonuclease HII BMD_4194 PF01926 50S ribosome-binding GTPase BMD_4195 PF10502 Signal peptidase, peptidase S26 BMD_4196 PF01245 Ribosomal protein L19 BMD_4197 PF01746 tRNA (Guanine-1)-methyltransferase BMD_4198 PF05239 PRC-barrel domain BMD_4198 PF01782 RimM N-terminal domain BMD_4201 PF00886 Ribosomal protein S16 BMD_4202 PF02978 Signal peptide binding domain BMD_4202 PF02881 SRP54-type protein, helical bundle domain BMD_4202 PF00448 SRP54-type protein, GTPase domain BMD_4203 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BMD_4204 PF02881 SRP54-type protein, helical bundle domain BMD_4204 PF00448 SRP54-type protein, GTPase domain BMD_4205 PF02463 RecF/RecN/SMC N terminal domain BMD_4205 PF06470 SMC proteins Flexible Hinge Domain BMD_4207 PF00550 Phosphopantetheine attachment site BMD_4209 PF00698 Acyl transferase domain BMD_4210 PF02504 Fatty acid synthesis protein BMD_4211 PF01575 MaoC like domain BMD_4211 PF08279 HTH domain BMD_4212 PF17191 RecG wedge domain BMD_4212 PF00271 Helicase conserved C-terminal domain BMD_4212 PF00270 DEAD/DEAH box helicase BMD_4213 PF03313 Serine dehydratase alpha chain BMD_4214 PF01842 ACT domain BMD_4214 PF03315 Serine dehydratase beta chain BMD_4216 PF13684 Dihydroxyacetone kinase family BMD_4216 PF02734 DAK2 domain BMD_4217 PF03780 Asp23 family, cell envelope-related function BMD_4218 PF00830 Ribosomal L28 family BMD_4219 PF04263 Thiamin pyrophosphokinase, catalytic domain BMD_4219 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BMD_4220 PF00834 Ribulose-phosphate 3 epimerase family BMD_4221 PF03193 RsgA GTPase BMD_4221 PF16745 RsgA N-terminal domain BMD_4222 PF03793 PASTA domain BMD_4222 PF00069 Protein kinase domain BMD_4224 PF04055 Radical SAM superfamily BMD_4225 PF01029 NusB family BMD_4225 PF01189 16S rRNA methyltransferase RsmB/F BMD_4226 PF02911 Formyl transferase, C-terminal domain BMD_4226 PF00551 Formyl transferase BMD_4227 PF01327 Polypeptide deformylase BMD_4228 PF00271 Helicase conserved C-terminal domain BMD_4228 PF17764 3′ DNA-binding domain (3′BD) BMD_4228 PF18074 Primosomal protein N C-terminal domain BMD_4228 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BMD_4228 PF04851 Type III restriction enzyme, res subunit BMD_4229 PF02441 Flavoprotein BMD_4229 PF04127 DNA / pantothenate metabolism flavoprotein BMD_4230 PF01192 RNA polymerase Rpb6 BMD_4231 PF00625 Guanylate kinase BMD_4232 PF04025 Domain of unknown function (DUF370) BMD_4233 PF08340 Domain of unknown function (DUF1732) BMD_4233 PF03755 YicC-like family, N-terminal region BMD_4234 PF00690 Cation transporter/ATPase, N-terminus BMD_4234 PF00689 Cation transporting ATPase, C-terminus BMD_4236 PF00156 Phosphoribosyl transferase domain BMD_4237 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BMD_4238 PF01180 Dihydroorotate dehydrogenase BMD_4239 PF00175 Oxidoreductase NAD-binding domain BMD_4239 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BMD_4240 PF02142 MGS-like domain BMD_4240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BMD_4240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BMD_4241 PF00117 Glutamine amidotransferase class-I BMD_4241 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BMD_4242 PF01979 Amidohydrolase family BMD_4244 PF00860 Permease family BMD_4245 PF00156 Phosphoribosyl transferase domain BMD_4246 PF00849 RNA pseudouridylate synthase BMD_4246 PF01479 S4 domain BMD_4247 PF01252 Signal peptidase (SPase) II BMD_4249 PF08264 Anticodon-binding domain of tRNA BMD_4249 PF00133 tRNA synthetases class I (I, L, M and V) BMD_4249 PF06827 Zinc finger found in FPG and IleRS BMD_4250 PF05103 DivIVA protein BMD_4251 PF17774 Putative RNA-binding domain in YlmH BMD_4251 PF01479 S4 domain BMD_4252 PF02325 YGGT family BMD_4253 PF04472 Cell division protein SepF BMD_4254 PF01168 Alanine racemase, N-terminal domain BMD_4256 PF05239 PRC-barrel domain BMD_4257 PF04545 Sigma-70, region 4 BMD_4257 PF04539 Sigma-70 region 3 BMD_4257 PF04542 Sigma-70 region 2 BMD_4258 PF04542 Sigma-70 region 2 BMD_4258 PF04545 Sigma-70, region 4 BMD_4259 PF03419 Sporulation factor SpoIIGA BMD_4260 PF12327 FtsZ family, C-terminal domain BMD_4260 PF00091 Tubulin/FtsZ family, GTPase domain BMD_4261 PF02491 SHS2 domain inserted in FTSA BMD_4262 PF08478 POTRA domain, FtsQ-type BMD_4263 PF01565 FAD binding domain BMD_4263 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BMD_4264 PF01098 Cell cycle protein BMD_4265 PF02875 Mur ligase family, glutamate ligase domain BMD_4265 PF08245 Mur ligase middle domain BMD_4266 PF00953 Glycosyl transferase family 4 BMD_4267 PF01225 Mur ligase family, catalytic domain BMD_4267 PF08245 Mur ligase middle domain BMD_4267 PF02875 Mur ligase family, glutamate ligase domain BMD_4268 PF03793 PASTA domain BMD_4268 PF03717 Penicillin-binding Protein dimerisation domain BMD_4268 PF00905 Penicillin binding protein transpeptidase domain BMD_4270 PF04977 Septum formation initiator BMD_4271 PF01795 MraW methylase family BMD_4272 PF10079 Bacillithiol biosynthesis BshC BMD_4274 PF08546 Ketopantoate reductase PanE/ApbA C terminal BMD_4274 PF02558 Ketopantoate reductase PanE/ApbA BMD_4275 PF01039 Carboxyl transferase domain BMD_4276 PF00364 Biotin-requiring enzyme BMD_4277 PF02785 Biotin carboxylase C-terminal domain BMD_4277 PF00289 Biotin carboxylase, N-terminal domain BMD_4277 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BMD_4278 PF13508 Acetyltransferase (GNAT) domain BMD_4280 PF00378 Enoyl-CoA hydratase/isomerase BMD_4281 PF01783 Ribosomal L32p protein family BMD_4282 PF02620 Large ribosomal RNA subunit accumulation protein YceD BMD_4283 PF05636 HIGH Nucleotidyl Transferase BMD_4284 PF13180 PDZ domain BMD_4284 PF05362 Lon protease (S16) C-terminal proteolytic domain BMD_4285 PF01734 Patatin-like phospholipase BMD_4286 PF07670 Nucleoside recognition BMD_4287 PF01467 Cytidylyltransferase-like BMD_4290 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BMD_4291 PF06133 Control of competence regulator ComK, YlbF/YmcA BMD_4293 PF14003 YlbE-like protein BMD_4294 PF14071 Putative coat protein BMD_4295 PF07187 Protein of unknown function (DUF1405) BMD_4296 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BMD_4296 PF00032 Cytochrome b(C-terminal)/b6/petD BMD_4297 PF00033 Cytochrome b/b6/petB BMD_4298 PF00355 Rieske [2Fe-2S] domain BMD_4299 PF10673 Protein of unknown function (DUF2487) BMD_4300 PF08858 IDEAL domain BMD_4300 PF08864 UPF0302 domain BMD_4302 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BMD_4303 PF02153 Prephenate dehydrogenase BMD_4303 PF01842 ACT domain BMD_4304 PF00155 Aminotransferase class I and II BMD_4305 PF00290 Tryptophan synthase alpha chain BMD_4306 PF00291 Pyridoxal-phosphate dependent enzyme BMD_4307 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BMD_4308 PF00218 Indole-3-glycerol phosphate synthase BMD_4309 PF00591 Glycosyl transferase family, a/b domain BMD_4309 PF02885 Glycosyl transferase family, helical bundle domain BMD_4310 PF04715 Anthranilate synthase component I, N terminal region BMD_4310 PF00425 chorismate binding enzyme BMD_4311 PF01761 3-dehydroquinate synthase BMD_4312 PF01264 Chorismate synthase BMD_4313 PF01739 CheR methyltransferase, SAM binding domain BMD_4313 PF03705 CheR methyltransferase, all-alpha domain BMD_4314 PF00334 Nucleoside diphosphate kinase BMD_4315 PF00348 Polyprenyl synthetase BMD_4316 PF01209 ubiE/COQ5 methyltransferase family BMD_4317 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BMD_4318 PF02081 Tryptophan RNA-binding attenuator protein BMD_4319 PF01227 GTP cyclohydrolase I BMD_4320 PF00216 Bacterial DNA-binding protein BMD_4321 PF09547 Stage IV sporulation protein A (spore_IV_A) BMD_4323 PF10966 Protein of unknown function (DUF2768) BMD_4324 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BMD_4324 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BMD_4325 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BMD_4325 PF01926 50S ribosome-binding GTPase BMD_4327 PF14140 YpzI-like protein BMD_4329 PF01070 FMN-dependent dehydrogenase BMD_4330 PF00575 S1 RNA binding domain BMD_4331 PF01553 Acyltransferase BMD_4332 PF02224 Cytidylate kinase BMD_4335 PF03413 Peptidase propeptide and YPEB domain BMD_4335 PF14620 YpeB sporulation BMD_4336 PF01471 Putative peptidoglycan binding domain BMD_4336 PF07486 Cell Wall Hydrolase BMD_4337 PF13367 PrsW family intramembrane metalloprotease BMD_4338 PF00710 Asparaginase, N-terminal BMD_4338 PF17763 Glutaminase/Asparaginase C-terminal domain BMD_4340 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BMD_4340 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_4341 PF05389 Negative regulator of genetic competence (MecA) BMD_4342 PF13411 MerR HTH family regulatory protein BMD_4343 PF00149 Calcineurin-like phosphoesterase BMD_4346 PF02517 CPBP intramembrane metalloprotease BMD_4347 PF00270 DEAD/DEAH box helicase BMD_4347 PF00271 Helicase conserved C-terminal domain BMD_4350 PF12822 ECF transporter, substrate-specific component BMD_4351 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BMD_4351 PF01842 ACT domain BMD_4351 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BMD_4352 PF01551 Peptidase family M23 BMD_4353 PF18698 Histidine kinase sensor domain BMD_4353 PF00989 PAS fold BMD_4353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_4353 PF00512 His Kinase A (phospho-acceptor) domain BMD_4353 PF00672 HAMP domain BMD_4354 PF00486 Transcriptional regulatory protein, C terminal BMD_4354 PF00072 Response regulator receiver domain BMD_4355 PF01578 Cytochrome C assembly protein BMD_4356 PF05140 ResB-like family BMD_4357 PF00578 AhpC/TSA family BMD_4358 PF00849 RNA pseudouridylate synthase BMD_4358 PF01479 S4 domain BMD_4359 PF07670 Nucleoside recognition BMD_4360 PF07670 Nucleoside recognition BMD_4361 PF07943 Penicillin-binding protein 5, C-terminal domain BMD_4361 PF00768 D-alanyl-D-alanine carboxypeptidase BMD_4362 PF04079 Segregation and condensation complex subunit ScpB BMD_4363 PF02616 Segregation and condensation protein ScpA BMD_4365 PF03745 Domain of unknown function (DUF309) BMD_4366 PF00583 Acetyltransferase (GNAT) family BMD_4367 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BMD_4368 PF06207 Protein of unknown function (DUF1002) BMD_4369 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BMD_4369 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BMD_4370 PF03323 Bacillus/Clostridium GerA spore germination protein BMD_4371 PF14097 Stage V sporulation protein AE1 BMD_4372 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BMD_4373 PF07451 Stage V sporulation protein AD (SpoVAD) BMD_4374 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BMD_4375 PF13782 Stage V sporulation protein AB BMD_4376 PF12164 Stage V sporulation protein AA BMD_4377 PF04542 Sigma-70 region 2 BMD_4377 PF04545 Sigma-70, region 4 BMD_4377 PF04539 Sigma-70 region 3 BMD_4378 PF13581 Histidine kinase-like ATPase domain BMD_4379 PF01740 STAS domain BMD_4380 PF07943 Penicillin-binding protein 5, C-terminal domain BMD_4380 PF00768 D-alanyl-D-alanine carboxypeptidase BMD_4381 PF01048 Phosphorylase superfamily BMD_4382 PF01676 Metalloenzyme superfamily BMD_4383 PF02899 Phage integrase, N-terminal SAM-like domain BMD_4383 PF00589 Phage integrase family BMD_4384 PF14004 Protein of unknown function (DUF4227) BMD_4385 PF01475 Ferric uptake regulator family BMD_4386 PF01944 Stage II sporulation protein M BMD_4387 PF00293 NUDIX domain BMD_4388 PF13072 Mother cell inhibitor of FtsZ BMD_4389 PF00248 Aldo/keto reductase family BMD_4391 PF01144 Coenzyme A transferase BMD_4392 PF01144 Coenzyme A transferase BMD_4393 PF00108 Thiolase, N-terminal domain BMD_4393 PF02803 Thiolase, C-terminal domain BMD_4394 PF00682 HMGL-like BMD_4395 PF12146 Serine aminopeptidase, S33 BMD_4398 PF00106 short chain dehydrogenase BMD_4399 PF00753 Metallo-beta-lactamase superfamily BMD_4400 PF03807 NADP oxidoreductase coenzyme F420-dependent BMD_4400 PF14748 Pyrroline-5-carboxylate reductase dimerisation BMD_4401 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BMD_4402 PF00753 Metallo-beta-lactamase superfamily BMD_4402 PF12706 Beta-lactamase superfamily domain BMD_4403 PF00202 Aminotransferase class-III BMD_4404 PF00171 Aldehyde dehydrogenase family BMD_4405 PF07905 Purine catabolism regulatory protein-like family BMD_4405 PF17853 GGDEF-like domain BMD_4405 PF13556 PucR C-terminal helix-turn-helix domain BMD_4408 PF01979 Amidohydrolase family BMD_4409 PF01180 Dihydroorotate dehydrogenase BMD_4410 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_4410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BMD_4411 PF01546 Peptidase family M20/M25/M40 BMD_4411 PF07687 Peptidase dimerisation domain BMD_4412 PF01039 Carboxyl transferase domain BMD_4414 PF03734 L,D-transpeptidase catalytic domain BMD_4415 PF11728 Putative aromatic acid exporter C-terminal domain BMD_4415 PF06081 Aromatic acid exporter family member 1 BMD_4416 PF00005 ABC transporter BMD_4417 PF00528 Binding-protein-dependent transport system inner membrane component BMD_4418 PF00497 Bacterial extracellular solute-binding proteins, family 3 BMD_4419 PF06491 Disulphide isomerase BMD_4421 PF02310 B12 binding domain BMD_4421 PF01642 Methylmalonyl-CoA mutase BMD_4423 PF02817 e3 binding domain BMD_4423 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BMD_4423 PF00364 Biotin-requiring enzyme BMD_4424 PF02780 Transketolase, C-terminal domain BMD_4424 PF02779 Transketolase, pyrimidine binding domain BMD_4425 PF00676 Dehydrogenase E1 component BMD_4426 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_4426 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BMD_4427 PF00871 Acetokinase family BMD_4428 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_4428 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BMD_4429 PF01515 Phosphate acetyl/butaryl transferase BMD_4430 PF00158 Sigma-54 interaction domain BMD_4430 PF00989 PAS fold BMD_4430 PF02954 Bacterial regulatory protein, Fis family BMD_4431 PF11118 Protein of unknown function (DUF2627) BMD_4432 PF03009 Glycerophosphoryl diester phosphodiesterase family BMD_4433 PF14174 YycC-like protein BMD_4434 PF00854 POT family BMD_4436 PF00072 Response regulator receiver domain BMD_4436 PF08769 Sporulation initiation factor Spo0A C terminal BMD_4437 PF05580 SpoIVB peptidase S55 BMD_4437 PF17820 PDZ domain BMD_4438 PF13476 AAA domain BMD_4439 PF02863 Arginine repressor, C-terminal domain BMD_4439 PF01316 Arginine repressor, DNA binding domain BMD_4440 PF01479 S4 domain BMD_4440 PF01728 FtsJ-like methyltransferase BMD_4441 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BMD_4441 PF02780 Transketolase, C-terminal domain BMD_4441 PF02779 Transketolase, pyrimidine binding domain BMD_4442 PF00348 Polyprenyl synthetase BMD_4443 PF02609 Exonuclease VII small subunit BMD_4444 PF13742 OB-fold nucleic acid binding domain BMD_4444 PF02601 Exonuclease VII, large subunit BMD_4445 PF01029 NusB family BMD_4446 PF03780 Asp23 family, cell envelope-related function BMD_4447 PF02785 Biotin carboxylase C-terminal domain BMD_4447 PF00289 Biotin carboxylase, N-terminal domain BMD_4447 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BMD_4448 PF00364 Biotin-requiring enzyme BMD_4449 PF12685 SpoIIIAH-like protein BMD_4451 PF09581 Stage III sporulation protein AF (Spore_III_AF) BMD_4452 PF09546 Stage III sporulation protein AE (spore_III_AE) BMD_4453 PF06686 Stage III sporulation protein AC/AD protein family BMD_4454 PF06686 Stage III sporulation protein AC/AD protein family BMD_4455 PF09548 Stage III sporulation protein AB (spore_III_AB) BMD_4457 PF10942 Protein of unknown function (DUF2619) BMD_4458 PF01132 Elongation factor P (EF-P) OB domain BMD_4458 PF08207 Elongation factor P (EF-P) KOW-like domain BMD_4458 PF09285 Elongation factor P, C-terminal BMD_4459 PF01321 Creatinase/Prolidase N-terminal domain BMD_4459 PF00557 Metallopeptidase family M24 BMD_4460 PF01220 Dehydroquinase class II BMD_4461 PF11085 Conserved membrane protein YqhR BMD_4462 PF07136 Protein of unknown function (DUF1385) BMD_4464 PF01734 Patatin-like phospholipase BMD_4465 PF01325 Iron dependent repressor, N-terminal DNA binding domain BMD_4465 PF02742 Iron dependent repressor, metal binding and dimerisation domain BMD_4467 PF03099 Biotin/lipoate A/B protein ligase family BMD_4468 PF00581 Rhodanese-like domain BMD_4469 PF02347 Glycine cleavage system P-protein BMD_4470 PF02347 Glycine cleavage system P-protein BMD_4471 PF01571 Aminomethyltransferase folate-binding domain BMD_4471 PF08669 Glycine cleavage T-protein C-terminal barrel domain BMD_4472 PF00271 Helicase conserved C-terminal domain BMD_4472 PF00176 SNF2 family N-terminal domain BMD_4473 PF11079 Bacterial protein YqhG of unknown function BMD_4474 PF14038 YqzE-like protein BMD_4478 PF07963 Prokaryotic N-terminal methylation motif BMD_4479 PF07963 Prokaryotic N-terminal methylation motif BMD_4480 PF00482 Type II secretion system (T2SS), protein F BMD_4481 PF00437 Type II/IV secretion system protein BMD_4482 PF03960 ArsC family BMD_4483 PF11117 Protein of unknown function (DUF2626) BMD_4484 PF00753 Metallo-beta-lactamase superfamily BMD_4486 PF00246 Zinc carboxypeptidase BMD_4487 PF00480 ROK family BMD_4488 PF06014 Bacterial protein of unknown function (DUF910) BMD_4489 PF01694 Rhomboid family BMD_4492 PF01812 5-formyltetrahydrofolate cyclo-ligase family BMD_4493 PF00471 Ribosomal protein L33 BMD_4494 PF00483 Nucleotidyl transferase BMD_4495 PF00534 Glycosyl transferases group 1 BMD_4495 PF13439 Glycosyltransferase Family 4 BMD_4497 PF01895 PhoU domain BMD_4498 PF00005 ABC transporter BMD_4501 PF07690 Major Facilitator Superfamily BMD_4502 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BMD_4502 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BMD_4508 PF04306 Protein of unknown function (DUF456) BMD_4511 PF07690 Major Facilitator Superfamily BMD_4513 PF04551 GcpE protein BMD_4516 PF01475 Ferric uptake regulator family BMD_4517 PF00950 ABC 3 transport family BMD_4518 PF00005 ABC transporter BMD_4520 PF01261 Xylose isomerase-like TIM barrel BMD_4521 PF00270 DEAD/DEAH box helicase BMD_4521 PF00271 Helicase conserved C-terminal domain BMD_4523 PF02401 LytB protein BMD_4524 PF01784 NIF3 (NGG1p interacting factor 3) BMD_4525 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BMD_4526 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BMD_4527 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_4527 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BMD_4527 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_4528 PF04542 Sigma-70 region 2 BMD_4528 PF04545 Sigma-70, region 4 BMD_4528 PF00140 Sigma-70 factor, region 1.2 BMD_4528 PF03979 Sigma-70 factor, region 1.1 BMD_4528 PF04539 Sigma-70 region 3 BMD_4529 PF08275 DNA primase catalytic core, N-terminal domain BMD_4529 PF01807 CHC2 zinc finger BMD_4529 PF10410 DnaB-helicase binding domain of primase BMD_4530 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BMD_4531 PF03618 Kinase/pyrophosphorylase BMD_4532 PF08279 HTH domain BMD_4532 PF00571 CBS domain BMD_4533 PF11967 Recombination protein O N terminal BMD_4533 PF02565 Recombination protein O C terminal BMD_4534 PF01926 50S ribosome-binding GTPase BMD_4534 PF07650 KH domain BMD_4535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BMD_4536 PF01219 Prokaryotic diacylglycerol kinase BMD_4537 PF02130 Uncharacterized protein family UPF0054 BMD_4538 PF07697 7TM-HD extracellular BMD_4538 PF01966 HD domain BMD_4538 PF07698 7TM receptor with intracellular HD hydrolase BMD_4539 PF02562 PhoH-like protein BMD_4540 PF06898 Putative stage IV sporulation protein YqfD BMD_4541 PF07873 YabP family BMD_4543 PF12127 SigmaW regulon antibacterial BMD_4544 PF01957 NfeD-like C-terminal, partner-binding BMD_4544 PF01972 Serine dehydrogenase proteinase BMD_4545 PF09424 Yqey-like protein BMD_4546 PF01165 Ribosomal protein S21 BMD_4547 PF04055 Radical SAM superfamily BMD_4547 PF01938 TRAM domain BMD_4547 PF00919 Uncharacterized protein family UPF0004 BMD_4548 PF04452 RNA methyltransferase BMD_4550 PF00226 DnaJ domain BMD_4550 PF00684 DnaJ central domain BMD_4550 PF01556 DnaJ C terminal domain BMD_4551 PF00012 Hsp70 protein BMD_4552 PF01025 GrpE BMD_4553 PF01628 HrcA protein C terminal domain BMD_4554 PF06969 HemN C-terminal domain BMD_4554 PF04055 Radical SAM superfamily BMD_4555 PF00679 Elongation factor G C-terminus BMD_4555 PF00009 Elongation factor Tu GTP binding domain BMD_4555 PF03144 Elongation factor Tu domain 2 BMD_4555 PF06421 GTP-binding protein LepA C-terminus BMD_4557 PF03418 Germination protease BMD_4558 PF01649 Ribosomal protein S20 BMD_4559 PF06144 DNA polymerase III, delta subunit BMD_4560 PF14141 YqzM-like protein BMD_4561 PF13567 Domain of unknown function (DUF4131) BMD_4561 PF00753 Metallo-beta-lactamase superfamily BMD_4561 PF03772 Competence protein BMD_4562 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BMD_4563 PF10531 SLBB domain BMD_4564 PF14748 Pyrroline-5-carboxylate reductase dimerisation BMD_4564 PF03807 NADP oxidoreductase coenzyme F420-dependent BMD_4565 PF13649 Methyltransferase domain BMD_4567 PF01966 HD domain BMD_4568 PF01467 Cytidylyltransferase-like BMD_4569 PF01985 CRS1 / YhbY (CRM) domain BMD_4570 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BMD_4570 PF01488 Shikimate / quinate 5-dehydrogenase BMD_4570 PF08501 Shikimate dehydrogenase substrate binding domain BMD_4571 PF01926 50S ribosome-binding GTPase BMD_4573 PF08970 Sporulation inhibitor A BMD_4574 PF02666 Phosphatidylserine decarboxylase BMD_4575 PF01066 CDP-alcohol phosphatidyltransferase BMD_4577 PF04542 Sigma-70 region 2 BMD_4577 PF04545 Sigma-70, region 4 BMD_4578 PF09501 Probable sporulation protein (Bac_small_yrzI) BMD_4580 PF01053 Cys/Met metabolism PLP-dependent enzyme BMD_4581 PF00291 Pyridoxal-phosphate dependent enzyme BMD_4582 PF01048 Phosphorylase superfamily BMD_4583 PF13649 Methyltransferase domain BMD_4584 PF10750 Protein of unknown function (DUF2536) BMD_4586 PF03717 Penicillin-binding Protein dimerisation domain BMD_4586 PF00905 Penicillin binding protein transpeptidase domain BMD_4587 PF00857 Isochorismatase family BMD_4588 PF01272 Transcription elongation factor, GreA/GreB, C-term BMD_4588 PF03449 Transcription elongation factor, N-terminal BMD_4589 PF00485 Phosphoribulokinase / Uridine kinase family BMD_4593 PF02618 YceG-like family BMD_4594 PF06949 Protein of unknown function (DUF1292) BMD_4595 PF03652 Holliday junction resolvase BMD_4596 PF06135 IreB regulatory phosphoprotein BMD_4597 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BMD_4597 PF01411 tRNA synthetases class II (A) BMD_4597 PF02272 DHHA1 domain BMD_4599 PF01594 AI-2E family transporter BMD_4602 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BMD_4602 PF14490 Helix-hairpin-helix containing domain BMD_4602 PF13538 UvrD-like helicase C-terminal domain BMD_4605 PF00266 Aminotransferase class-V BMD_4606 PF02082 Transcriptional regulator BMD_4607 PF05496 Holliday junction DNA helicase RuvB P-loop domain BMD_4607 PF16193 AAA C-terminal domain BMD_4607 PF12002 MgsA AAA+ ATPase C terminal BMD_4608 PF00528 Binding-protein-dependent transport system inner membrane component BMD_4609 PF00528 Binding-protein-dependent transport system inner membrane component BMD_4610 PF12849 PBP superfamily domain BMD_4611 PF00899 ThiF family BMD_4612 PF00152 tRNA synthetases class II (D, K and N) BMD_4612 PF01336 OB-fold nucleic acid binding domain BMD_4612 PF02938 GAD domain BMD_4613 PF13393 Histidyl-tRNA synthetase BMD_4613 PF03129 Anticodon binding domain BMD_4615 PF01520 N-acetylmuramoyl-L-alanine amidase BMD_4615 PF08239 Bacterial SH3 domain BMD_4616 PF02580 D-Tyr-tRNA(Tyr) deacylase BMD_4617 PF13291 ACT domain BMD_4617 PF04607 Region found in RelA / SpoT proteins BMD_4617 PF02824 TGS domain BMD_4618 PF00156 Phosphoribosyl transferase domain BMD_4619 PF17768 RecJ OB domain BMD_4619 PF02272 DHHA1 domain BMD_4619 PF01368 DHH family BMD_4619 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BMD_4620 PF07549 SecD/SecF GG Motif BMD_4620 PF02355 Protein export membrane protein BMD_4621 PF13797 Post-transcriptional regulator BMD_4622 PF14667 Polysaccharide biosynthesis C-terminal domain BMD_4622 PF01943 Polysaccharide biosynthesis protein BMD_4623 PF04239 Protein of unknown function (DUF421) BMD_4624 PF12670 Protein of unknown function (DUF3792) BMD_4625 PF02699 Preprotein translocase subunit BMD_4627 PF02547 Queuosine biosynthesis protein BMD_4628 PF11146 Protein of unknown function (DUF2905) BMD_4629 PF17864 RuvB AAA lid domain BMD_4629 PF05491 RuvB C-terminal winged helix domain BMD_4629 PF05496 Holliday junction DNA helicase RuvB P-loop domain BMD_4635 PF01476 LysM domain BMD_4636 PF02445 Quinolinate synthetase A protein BMD_4637 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BMD_4637 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BMD_4638 PF00890 FAD binding domain BMD_4638 PF02910 Fumarate reductase flavoprotein C-term BMD_4639 PF00266 Aminotransferase class-V BMD_4640 PF02829 3H domain BMD_4640 PF08279 HTH domain BMD_4641 PF00800 Prephenate dehydratase BMD_4641 PF01842 ACT domain BMD_4642 PF01842 ACT domain BMD_4643 PF01926 50S ribosome-binding GTPase BMD_4643 PF01018 GTP1/OBG BMD_4643 PF09269 Domain of unknown function (DUF1967) BMD_4644 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BMD_4644 PF14682 Sporulation initiation phospho-transferase B, C-terminal BMD_4645 PF01016 Ribosomal L27 protein BMD_4646 PF04327 Cysteine protease Prp BMD_4647 PF00829 Ribosomal prokaryotic L21 protein BMD_4648 PF00575 S1 RNA binding domain BMD_4648 PF10150 Ribonuclease E/G family BMD_4649 PF02163 Peptidase family M50 BMD_4650 PF01551 Peptidase family M23 BMD_4651 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BMD_4652 PF03775 Septum formation inhibitor MinC, C-terminal domain BMD_4653 PF04093 rod shape-determining protein MreD BMD_4654 PF04085 rod shape-determining protein MreC BMD_4656 PF04002 RadC-like JAB domain BMD_4657 PF02545 Maf-like protein BMD_4659 PF06750 Bacterial Peptidase A24 N-terminal domain BMD_4659 PF01478 Type IV leader peptidase family BMD_4661 PF04238 Protein of unknown function (DUF420) BMD_4662 PF08245 Mur ligase middle domain BMD_4662 PF02875 Mur ligase family, glutamate ligase domain BMD_4663 PF08264 Anticodon-binding domain of tRNA BMD_4663 PF00133 tRNA synthetases class I (I, L, M and V) BMD_4663 PF10458 Valyl tRNA synthetase tRNA binding arm BMD_4666 PF01476 LysM domain BMD_4667 PF00202 Aminotransferase class-III BMD_4668 PF00490 Delta-aminolevulinic acid dehydratase BMD_4669 PF02602 Uroporphyrinogen-III synthase HemD BMD_4670 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BMD_4670 PF03900 Porphobilinogen deaminase, C-terminal domain BMD_4671 PF01578 Cytochrome C assembly protein BMD_4672 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BMD_4672 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BMD_4672 PF01488 Shikimate / quinate 5-dehydrogenase BMD_4674 PF01926 50S ribosome-binding GTPase BMD_4675 PF00004 ATPase family associated with various cellular activities (AAA) BMD_4675 PF05362 Lon protease (S16) C-terminal proteolytic domain BMD_4675 PF02190 ATP-dependent protease La (LON) substrate-binding domain BMD_4676 PF00004 ATPase family associated with various cellular activities (AAA) BMD_4676 PF05362 Lon protease (S16) C-terminal proteolytic domain BMD_4677 PF07724 AAA domain (Cdc48 subfamily) BMD_4677 PF10431 C-terminal, D2-small domain, of ClpB protein BMD_4677 PF06689 ClpX C4-type zinc finger BMD_4678 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BMD_4678 PF05697 Bacterial trigger factor protein (TF) BMD_4678 PF05698 Bacterial trigger factor protein (TF) C-terminus BMD_4680 PF00694 Aconitase C-terminal domain BMD_4681 PF00330 Aconitase family (aconitate hydratase) BMD_4682 PF00180 Isocitrate/isopropylmalate dehydrogenase BMD_4683 PF08502 LeuA allosteric (dimerisation) domain BMD_4683 PF00682 HMGL-like BMD_4684 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BMD_4684 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BMD_4685 PF10369 Small subunit of acetolactate synthase BMD_4685 PF01842 ACT domain BMD_4686 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_4686 PF00205 Thiamine pyrophosphate enzyme, central domain BMD_4686 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_4688 PF12850 Calcineurin-like phosphoesterase superfamily domain BMD_4689 PF01725 Ham1 family BMD_4690 PF01138 3' exoribonuclease family, domain 1 BMD_4690 PF03725 3' exoribonuclease family, domain 2 BMD_4691 PF10646 Sporulation and spore germination BMD_4692 PF01177 Asp/Glu/Hydantoin racemase BMD_4693 PF01047 MarR family BMD_4694 PF11724 YvbH-like oligomerisation region BMD_4694 PF08000 Bacterial PH domain BMD_4695 PF01384 Phosphate transporter family BMD_4696 PF01865 Protein of unknown function DUF47 BMD_4697 PF00905 Penicillin binding protein transpeptidase domain BMD_4697 PF03717 Penicillin-binding Protein dimerisation domain BMD_4697 PF05223 NTF2-like N-terminal transpeptidase domain BMD_4699 PF00296 Luciferase-like monooxygenase BMD_4700 PF03358 NADPH-dependent FMN reductase BMD_4701 PF00528 Binding-protein-dependent transport system inner membrane component BMD_4702 PF09084 NMT1/THI5 like BMD_4703 PF00005 ABC transporter BMD_4704 PF00999 Sodium/hydrogen exchanger family BMD_4705 PF02080 TrkA-C domain BMD_4707 PF00196 Bacterial regulatory proteins, luxR family BMD_4708 PF03061 Thioesterase superfamily BMD_4709 PF13085 2Fe-2S iron-sulfur cluster binding domain BMD_4709 PF13183 4Fe-4S dicluster domain BMD_4710 PF00890 FAD binding domain BMD_4710 PF02910 Fumarate reductase flavoprotein C-term BMD_4711 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BMD_4712 PF10702 Protein of unknown function (DUF2507) BMD_4713 PF00696 Amino acid kinase family BMD_4713 PF01842 ACT domain BMD_4713 PF13840 ACT domain BMD_4714 PF02151 UvrB/uvrC motif BMD_4714 PF01541 GIY-YIG catalytic domain BMD_4714 PF08459 UvrC Helix-hairpin-helix N-terminal BMD_4715 PF00085 Thioredoxin BMD_4716 PF00766 Electron transfer flavoprotein FAD-binding domain BMD_4716 PF01012 Electron transfer flavoprotein domain BMD_4717 PF01012 Electron transfer flavoprotein domain BMD_4718 PF00378 Enoyl-CoA hydratase/isomerase BMD_4719 PF08359 YsiA-like protein, C-terminal region BMD_4719 PF00440 Bacterial regulatory proteins, tetR family BMD_4720 PF13193 AMP-binding enzyme C-terminal domain BMD_4720 PF00501 AMP-binding enzyme BMD_4721 PF01717 Cobalamin-independent synthase, Catalytic domain BMD_4722 PF03994 Domain of Unknown Function (DUF350) BMD_4723 PF01713 Smr domain BMD_4723 PF00488 MutS domain V BMD_4724 PF14791 DNA polymerase beta thumb BMD_4724 PF02811 PHP domain BMD_4724 PF14716 Helix-hairpin-helix domain BMD_4725 PF02674 Colicin V production protein BMD_4726 PF05164 Cell division protein ZapA BMD_4727 PF01351 Ribonuclease HII BMD_4727 PF11858 Domain of unknown function (DUF3378) BMD_4728 PF01588 Putative tRNA binding domain BMD_4728 PF03147 Ferredoxin-fold anticodon binding domain BMD_4728 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BMD_4728 PF03484 tRNA synthetase B5 domain BMD_4728 PF03483 B3/4 domain BMD_4730 PF08032 RNA 2'-O ribose methyltransferase substrate binding BMD_4730 PF00588 SpoU rRNA Methylase family BMD_4731 PF14098 Small, acid-soluble spore protein I BMD_4732 PF05343 M42 glutamyl aminopeptidase BMD_4736 PF00453 Ribosomal protein L20 BMD_4737 PF01632 Ribosomal protein L35 BMD_4738 PF00707 Translation initiation factor IF-3, C-terminal domain BMD_4738 PF05198 Translation initiation factor IF-3, N-terminal domain BMD_4739 PF02824 TGS domain BMD_4739 PF03129 Anticodon binding domain BMD_4739 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BMD_4739 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BMD_4740 PF08812 YtxC-like family BMD_4741 PF07319 Primosomal protein DnaI N-terminus BMD_4741 PF01695 IstB-like ATP binding protein BMD_4742 PF07261 Replication initiation and membrane attachment BMD_4743 PF03477 ATP cone domain BMD_4745 PF02675 S-adenosylmethionine decarboxylase BMD_4746 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BMD_4746 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BMD_4747 PF01121 Dephospho-CoA kinase BMD_4748 PF02659 Putative manganese efflux pump BMD_4749 PF06827 Zinc finger found in FPG and IleRS BMD_4749 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BMD_4749 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BMD_4750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BMD_4750 PF00476 DNA polymerase family A BMD_4750 PF01367 5'-3' exonuclease, C-terminal SAM fold BMD_4751 PF00512 His Kinase A (phospho-acceptor) domain BMD_4751 PF00989 PAS fold BMD_4751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_4751 PF16736 Single Cache-like BMD_4752 PF00486 Transcriptional regulatory protein, C terminal BMD_4752 PF00072 Response regulator receiver domain BMD_4754 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BMD_4754 PF00056 lactate/malate dehydrogenase, NAD binding domain BMD_4755 PF00180 Isocitrate/isopropylmalate dehydrogenase BMD_4756 PF00285 Citrate synthase, C-terminal domain BMD_4757 PF04284 Protein of unknown function (DUF441) BMD_4758 PF01594 AI-2E family transporter BMD_4759 PF04186 FxsA cytoplasmic membrane protein BMD_4760 PF00224 Pyruvate kinase, barrel domain BMD_4760 PF02887 Pyruvate kinase, alpha/beta domain BMD_4760 PF00391 PEP-utilising enzyme, mobile domain BMD_4761 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BMD_4762 PF17848 Acetyl-coA carboxylase zinc finger domain BMD_4762 PF01039 Carboxyl transferase domain BMD_4763 PF00392 Bacterial regulatory proteins, gntR family BMD_4763 PF07729 FCD domain BMD_4764 PF03949 Malic enzyme, NAD binding domain BMD_4764 PF00390 Malic enzyme, N-terminal domain BMD_4765 PF07733 Bacterial DNA polymerase III alpha NTPase domain BMD_4765 PF14579 Helix-hairpin-helix motif BMD_4765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BMD_4765 PF01336 OB-fold nucleic acid binding domain BMD_4765 PF02811 PHP domain BMD_4766 PF14034 Sporulation protein YtrH BMD_4768 PF01368 DHH family BMD_4768 PF02272 DHHA1 domain BMD_4769 PF14007 YtpI-like protein BMD_4770 PF00392 Bacterial regulatory proteins, gntR family BMD_4770 PF00571 CBS domain BMD_4770 PF03061 Thioesterase superfamily BMD_4770 PF07085 DRTGG domain BMD_4773 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BMD_4773 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BMD_4775 PF00206 Lyase BMD_4775 PF14698 Argininosuccinate lyase C-terminal BMD_4776 PF00764 Arginosuccinate synthase BMD_4779 PF00871 Acetokinase family BMD_4780 PF02384 N-6 DNA Methylase BMD_4781 PF08534 Redoxin BMD_4782 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BMD_4783 PF11167 Protein of unknown function (DUF2953) BMD_4784 PF06271 RDD family BMD_4785 PF01343 Peptidase family S49 BMD_4786 PF01513 ATP-NAD kinase BMD_4787 PF07969 Amidohydrolase family BMD_4788 PF00269 Small, acid-soluble spore proteins, alpha/beta type BMD_4789 PF02568 Thiamine biosynthesis protein (ThiI) BMD_4789 PF02926 THUMP domain BMD_4790 PF00266 Aminotransferase class-V BMD_4791 PF06160 Septation ring formation regulator, EzrA BMD_4792 PF02811 PHP domain BMD_4793 PF00440 Bacterial regulatory proteins, tetR family BMD_4794 PF13185 GAF domain BMD_4796 PF00163 Ribosomal protein S4/S9 N-terminal domain BMD_4796 PF01479 S4 domain BMD_4797 PF00579 tRNA synthetases class I (W and Y) BMD_4797 PF01479 S4 domain BMD_4798 PF13193 AMP-binding enzyme C-terminal domain BMD_4798 PF00501 AMP-binding enzyme BMD_4799 PF00583 Acetyltransferase (GNAT) family BMD_4800 PF00571 CBS domain BMD_4801 PF00850 Histone deacetylase domain BMD_4802 PF00691 OmpA family BMD_4802 PF13677 Membrane MotB of proton-channel complex MotA/MotB BMD_4803 PF01618 MotA/TolQ/ExbB proton channel family BMD_4804 PF00356 Bacterial regulatory proteins, lacI family BMD_4805 PF00793 DAHP synthetase I family BMD_4805 PF01817 Chorismate mutase type II BMD_4806 PF11009 Protein of unknown function (DUF2847) BMD_4807 PF12732 YtxH-like protein BMD_4809 PF02073 Thermophilic metalloprotease (M29) BMD_4810 PF01225 Mur ligase family, catalytic domain BMD_4810 PF02875 Mur ligase family, glutamate ligase domain BMD_4810 PF08245 Mur ligase middle domain BMD_4812 PF09397 Ftsk gamma domain BMD_4812 PF17854 FtsK alpha domain BMD_4812 PF01580 FtsK/SpoIIIE family BMD_4813 PF01588 Putative tRNA binding domain BMD_4813 PF14794 Domain of unknown function (DUF4479) BMD_4814 PF07285 Protein of unknown function (DUF1444) BMD_4815 PF00085 Thioredoxin BMD_4816 PF01931 Protein of unknown function DUF84 BMD_4817 PF05343 M42 glutamyl aminopeptidase BMD_4818 PF03413 Peptidase propeptide and YPEB domain BMD_4819 PF00753 Metallo-beta-lactamase superfamily BMD_4820 PF02390 Putative methyltransferase BMD_4821 PF14165 YtzH-like protein BMD_4822 PF01636 Phosphotransferase enzyme family BMD_4823 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BMD_4823 PF17999 Pullulanase N1-terminal domain BMD_4823 PF00128 Alpha amylase, catalytic domain BMD_4826 PF00291 Pyridoxal-phosphate dependent enzyme BMD_4827 PF01546 Peptidase family M20/M25/M40 BMD_4828 PF08220 DeoR-like helix-turn-helix domain BMD_4829 PF00849 RNA pseudouridylate synthase BMD_4829 PF01479 S4 domain BMD_4830 PF01943 Polysaccharide biosynthesis protein BMD_4830 PF14667 Polysaccharide biosynthesis C-terminal domain BMD_4833 PF00581 Rhodanese-like domain BMD_4834 PF08264 Anticodon-binding domain of tRNA BMD_4834 PF00133 tRNA synthetases class I (I, L, M and V) BMD_4834 PF13603 Leucyl-tRNA synthetase, Domain 2 BMD_4834 PF09334 tRNA synthetases class I (M) BMD_4837 PF07690 Major Facilitator Superfamily BMD_4839 PF10732 Protein of unknown function (DUF2524) BMD_4840 PF04055 Radical SAM superfamily BMD_4840 PF16199 Radical_SAM C-terminal domain BMD_4841 PF06962 Putative rRNA methylase BMD_4842 PF10776 Protein of unknown function (DUF2600) BMD_4843 PF12146 Serine aminopeptidase, S33 BMD_4844 PF00132 Bacterial transferase hexapeptide (six repeats) BMD_4845 PF01569 PAP2 superfamily BMD_4846 PF00534 Glycosyl transferases group 1 BMD_4846 PF13439 Glycosyltransferase Family 4 BMD_4847 PF02772 S-adenosylmethionine synthetase, central domain BMD_4847 PF02773 S-adenosylmethionine synthetase, C-terminal domain BMD_4847 PF00438 S-adenosylmethionine synthetase, N-terminal domain BMD_4848 PF01293 Phosphoenolpyruvate carboxykinase BMD_4849 PF10763 Protein of unknown function (DUF2584) BMD_4850 PF00326 Prolyl oligopeptidase family BMD_4852 PF00005 ABC transporter BMD_4853 PF00528 Binding-protein-dependent transport system inner membrane component BMD_4854 PF00293 NUDIX domain BMD_4856 PF05105 Bacteriophage holin family BMD_4857 PF00210 Ferritin-like domain BMD_4858 PF02664 S-Ribosylhomocysteinase (LuxS) BMD_4859 PF01809 Putative membrane protein insertion efficiency factor BMD_4860 PF00484 Carbonic anhydrase BMD_4861 PF07683 Cobalamin synthesis protein cobW C-terminal domain BMD_4861 PF02492 CobW/HypB/UreG, nucleotide-binding domain BMD_4862 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BMD_4862 PF01297 Zinc-uptake complex component A periplasmic BMD_4863 PF01197 Ribosomal protein L31 BMD_4864 PF01654 Cytochrome bd terminal oxidase subunit I BMD_4865 PF02322 Cytochrome bd terminal oxidase subunit II BMD_4866 PF00258 Flavodoxin BMD_4869 PF07561 Domain of Unknown Function (DUF1540) BMD_4871 PF00268 Ribonucleotide reductase, small chain BMD_4872 PF03477 ATP cone domain BMD_4872 PF02867 Ribonucleotide reductase, barrel domain BMD_4872 PF00317 Ribonucleotide reductase, all-alpha domain BMD_4873 PF13378 Enolase C-terminal domain-like BMD_4873 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BMD_4874 PF13193 AMP-binding enzyme C-terminal domain BMD_4874 PF00501 AMP-binding enzyme BMD_4875 PF00378 Enoyl-CoA hydratase/isomerase BMD_4876 PF00561 alpha/beta hydrolase fold BMD_4877 PF16582 Middle domain of thiamine pyrophosphate BMD_4877 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BMD_4877 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BMD_4878 PF00425 chorismate binding enzyme BMD_4879 PF01258 Prokaryotic dksA/traR C4-type zinc finger BMD_4881 PF00343 Carbohydrate phosphorylase BMD_4882 PF00534 Glycosyl transferases group 1 BMD_4882 PF08323 Starch synthase catalytic domain BMD_4883 PF00483 Nucleotidyl transferase BMD_4885 PF00128 Alpha amylase, catalytic domain BMD_4885 PF02806 Alpha amylase, C-terminal all-beta domain BMD_4885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BMD_4910 PF00501 AMP-binding enzyme BMD_4910 PF13193 AMP-binding enzyme C-terminal domain BMD_4911 PF02308 MgtC family BMD_4912 PF14824 Sirohaem biosynthesis protein central BMD_4913 PF01903 CbiX BMD_4914 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BMD_4916 PF01747 ATP-sulfurylase BMD_4916 PF14306 PUA-like domain BMD_4917 PF01384 Phosphate transporter family BMD_4918 PF01507 Phosphoadenosine phosphosulfate reductase family BMD_4919 PF10372 Bacterial membrane-spanning protein N-terminus BMD_4919 PF02457 DisA bacterial checkpoint controller nucleotide-binding BMD_4920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BMD_4921 PF02254 TrkA-N domain BMD_4921 PF07885 Ion channel BMD_4922 PF08868 YugN-like family BMD_4923 PF00342 Phosphoglucose isomerase BMD_4924 PF00361 Proton-conducting membrane transporter BMD_4924 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BMD_4924 PF13244 Domain of unknown function (DUF4040) BMD_4925 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BMD_4926 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BMD_4927 PF00361 Proton-conducting membrane transporter BMD_4928 PF01899 Na+/H+ ion antiporter subunit BMD_4929 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BMD_4930 PF03334 Na+/H+ antiporter subunit BMD_4931 PF00465 Iron-containing alcohol dehydrogenase BMD_4932 PF04070 Domain of unknown function (DUF378) BMD_4933 PF00575 S1 RNA binding domain BMD_4934 PF00155 Aminotransferase class I and II BMD_4935 PF01037 Lrp/AsnC ligand binding domain BMD_4936 PF00561 alpha/beta hydrolase fold BMD_4936 PF08386 TAP-like protein BMD_4937 PF00155 Aminotransferase class I and II BMD_4938 PF00080 Copper/zinc superoxide dismutase (SODC) BMD_4940 PF08810 Kinase associated protein B BMD_4941 PF00929 Exonuclease BMD_4942 PF03061 Thioesterase superfamily BMD_4944 PF01966 HD domain BMD_4946 PF13726 Na+-H+ antiporter family BMD_4946 PF03553 Na+/H+ antiporter family BMD_4947 PF00883 Cytosol aminopeptidase family, catalytic domain BMD_4947 PF02789 Cytosol aminopeptidase family, N-terminal domain BMD_4948 PF02681 Divergent PAP2 family BMD_4949 PF06725 3D domain BMD_4950 PF14068 Putative membrane protein BMD_4951 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_4952 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_4954 PF01521 Iron-sulphur cluster biosynthesis BMD_4955 PF01678 Diaminopimelate epimerase BMD_4956 PF07293 Protein of unknown function (DUF1450) BMD_4957 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_4958 PF07315 Protein of unknown function (DUF1462) BMD_4959 PF01106 NifU-like domain BMD_4960 PF00288 GHMP kinases N terminal domain BMD_4960 PF08544 GHMP kinases C terminal BMD_4961 PF00291 Pyridoxal-phosphate dependent enzyme BMD_4962 PF03447 Homoserine dehydrogenase, NAD binding domain BMD_4962 PF01842 ACT domain BMD_4962 PF00742 Homoserine dehydrogenase BMD_4963 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BMD_4963 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BMD_4965 PF04608 Phosphatidylglycerophosphatase A BMD_4966 PF13344 Haloacid dehalogenase-like hydrolase BMD_4967 PF01934 Protein of unknown function DUF86 BMD_4969 PF06265 Protein of unknown function (DUF1027) BMD_4970 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BMD_4971 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BMD_4971 PF04055 Radical SAM superfamily BMD_4972 PF01551 Peptidase family M23 BMD_4973 PF09560 Sporulation protein YunB (Spo_YunB) BMD_4974 PF08827 Domain of unknown function (DUF1805) BMD_4975 PF01904 Protein of unknown function DUF72 BMD_4976 PF01458 Uncharacterized protein family (UPF0051) BMD_4977 PF01592 NifU-like N terminal domain BMD_4978 PF00266 Aminotransferase class-V BMD_4979 PF01458 Uncharacterized protein family (UPF0051) BMD_4980 PF00005 ABC transporter BMD_4981 PF02627 Carboxymuconolactone decarboxylase family BMD_4982 PF03180 NLPA lipoprotein BMD_4983 PF00528 Binding-protein-dependent transport system inner membrane component BMD_4984 PF00005 ABC transporter BMD_4984 PF09383 NIL domain BMD_4985 PF00085 Thioredoxin BMD_4986 PF01751 Toprim domain BMD_4988 PF01597 Glycine cleavage H-protein BMD_4989 PF03960 ArsC family BMD_4990 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_4990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BMD_4990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_4991 PF02803 Thiolase, C-terminal domain BMD_4991 PF00108 Thiolase, N-terminal domain BMD_4992 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BMD_4992 PF00378 Enoyl-CoA hydratase/isomerase BMD_4992 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BMD_4993 PF14115 YuzL-like protein BMD_4994 PF01619 Proline dehydrogenase BMD_4995 PF10835 Protein of unknown function (DUF2573) BMD_4997 PF00005 ABC transporter BMD_4998 PF01032 FecCD transport family BMD_4999 PF01032 FecCD transport family BMD_5000 PF01497 Periplasmic binding protein BMD_5001 PF13217 Protein of unknown function (DUF4025) BMD_5002 PF00873 AcrB/AcrD/AcrF family BMD_5003 PF00440 Bacterial regulatory proteins, tetR family BMD_5006 PF07690 Major Facilitator Superfamily BMD_5007 PF02627 Carboxymuconolactone decarboxylase family BMD_5008 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BMD_5008 PF03466 LysR substrate binding domain BMD_5009 PF02525 Flavodoxin-like fold BMD_5010 PF02525 Flavodoxin-like fold BMD_5011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_5011 PF00672 HAMP domain BMD_5011 PF00512 His Kinase A (phospho-acceptor) domain BMD_5012 PF00486 Transcriptional regulatory protein, C terminal BMD_5012 PF00072 Response regulator receiver domain BMD_5013 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BMD_5014 PF01569 PAP2 superfamily BMD_5015 PF01047 MarR family BMD_5016 PF00881 Nitroreductase family BMD_5017 PF02597 ThiS family BMD_5018 PF02391 MoaE protein BMD_5019 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BMD_5020 PF03453 MoeA N-terminal region (domain I and II) BMD_5020 PF00994 Probable molybdopterin binding domain BMD_5020 PF03454 MoeA C-terminal region (domain IV) BMD_5021 PF00899 ThiF family BMD_5022 PF12804 MobA-like NTP transferase domain BMD_5023 PF04055 Radical SAM superfamily BMD_5023 PF06463 Molybdenum Cofactor Synthesis C BMD_5024 PF02634 FdhD/NarQ family BMD_5025 PF10057 Uncharacterized conserved protein (DUF2294) BMD_5026 PF00037 4Fe-4S binding domain BMD_5026 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BMD_5026 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BMD_5026 PF00384 Molybdopterin oxidoreductase BMD_5026 PF01568 Molydopterin dinucleotide binding domain BMD_5027 PF07849 Protein of unknown function (DUF1641) BMD_5029 PF00528 Binding-protein-dependent transport system inner membrane component BMD_5030 PF01668 SmpB protein BMD_5031 PF00773 RNB domain BMD_5031 PF17876 Cold shock domain BMD_5031 PF08206 Ribonuclease B OB domain BMD_5031 PF00575 S1 RNA binding domain BMD_5032 PF12146 Serine aminopeptidase, S33 BMD_5033 PF03840 Preprotein translocase SecG subunit BMD_5034 PF00113 Enolase, C-terminal TIM barrel domain BMD_5034 PF03952 Enolase, N-terminal domain BMD_5035 PF01676 Metalloenzyme superfamily BMD_5035 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BMD_5036 PF00121 Triosephosphate isomerase BMD_5037 PF00162 Phosphoglycerate kinase BMD_5038 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BMD_5038 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BMD_5039 PF04198 Putative sugar-binding domain BMD_5041 PF04552 Sigma-54, DNA binding domain BMD_5041 PF00309 Sigma-54 factor, Activator interacting domain (AID) BMD_5041 PF04963 Sigma-54 factor, core binding domain BMD_5044 PF00574 Clp protease BMD_5045 PF00381 PTS HPr component phosphorylation site BMD_5046 PF14527 WhiA LAGLIDADG-like domain BMD_5046 PF02650 WhiA C-terminal HTH domain BMD_5046 PF10298 WhiA N-terminal LAGLIDADG-like domain BMD_5047 PF01933 Uncharacterised protein family UPF0052 BMD_5048 PF03668 P-loop ATPase protein family BMD_5049 PF00293 NUDIX domain BMD_5050 PF07992 Pyridine nucleotide-disulphide oxidoreductase BMD_5052 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BMD_5052 PF01502 Phosphoribosyl-AMP cyclohydrolase BMD_5053 PF00977 Histidine biosynthesis protein BMD_5054 PF00977 Histidine biosynthesis protein BMD_5055 PF00117 Glutamine amidotransferase class-I BMD_5056 PF00475 Imidazoleglycerol-phosphate dehydratase BMD_5057 PF00815 Histidinol dehydrogenase BMD_5058 PF01634 ATP phosphoribosyltransferase BMD_5059 PF13393 Histidyl-tRNA synthetase BMD_5060 PF14602 Hexapeptide repeat of succinyl-transferase BMD_5061 PF13419 Haloacid dehalogenase-like hydrolase BMD_5062 PF01790 Prolipoprotein diacylglyceryl transferase BMD_5063 PF02603 HPr Serine kinase N terminus BMD_5063 PF07475 HPr Serine kinase C-terminal domain BMD_5064 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BMD_5065 PF04024 PspC domain BMD_5066 PF13349 Putative adhesin BMD_5068 PF17755 UvrA DNA-binding domain BMD_5068 PF00005 ABC transporter BMD_5068 PF17760 UvrA interaction domain BMD_5069 PF04851 Type III restriction enzyme, res subunit BMD_5069 PF02151 UvrB/uvrC motif BMD_5069 PF17757 UvrB interaction domain BMD_5069 PF00271 Helicase conserved C-terminal domain BMD_5069 PF12344 Ultra-violet resistance protein B BMD_5070 PF00072 Response regulator receiver domain BMD_5070 PF00158 Sigma-54 interaction domain BMD_5070 PF02954 Bacterial regulatory protein, Fis family BMD_5071 PF01619 Proline dehydrogenase BMD_5072 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) BMD_5073 PF17820 PDZ domain BMD_5074 PF17820 PDZ domain BMD_5074 PF03572 Peptidase family S41 BMD_5074 PF01471 Putative peptidoglycan binding domain BMD_5075 PF00877 NlpC/P60 family BMD_5076 PF02687 FtsX-like permease family BMD_5076 PF18075 FtsX extracellular domain BMD_5077 PF00005 ABC transporter BMD_5078 PF03358 NADPH-dependent FMN reductase BMD_5079 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BMD_5080 PF00902 Sec-independent protein translocase protein (TatC) BMD_5081 PF02416 mttA/Hcf106 family BMD_5082 PF09423 PhoD-like phosphatase BMD_5082 PF16655 PhoD-like phosphatase, N-terminal domain BMD_5083 PF00472 RF-1 domain BMD_5083 PF03462 PCRF domain BMD_5084 PF01043 SecA preprotein cross-linking domain BMD_5084 PF07516 SecA Wing and Scaffold domain BMD_5084 PF07517 SecA DEAD-like domain BMD_5084 PF02810 SEC-C motif BMD_5085 PF09500 Putative thioesterase (yiiD_Cterm) BMD_5085 PF00583 Acetyltransferase (GNAT) family BMD_5086 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BMD_5086 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BMD_5088 PF02561 Flagellar protein FliS BMD_5089 PF07196 Flagellin hook IN motif BMD_5089 PF07195 Flagellar hook-associated protein 2 C-terminus BMD_5089 PF02465 Flagellar hook-associated protein 2 N-terminus BMD_5091 PF00324 Amino acid permease BMD_5094 PF00465 Iron-containing alcohol dehydrogenase BMD_5096 PF02599 Global regulator protein family BMD_5097 PF02623 FliW protein BMD_5098 PF00669 Bacterial flagellin N-terminal helical region BMD_5098 PF00700 Bacterial flagellin C-terminal helical region BMD_5099 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BMD_5099 PF00460 Flagella basal body rod protein BMD_5104 PF04851 Type III restriction enzyme, res subunit BMD_5104 PF00271 Helicase conserved C-terminal domain BMD_5105 PF02645 Uncharacterised protein, DegV family COG1307 BMD_5106 PF03885 Protein of unknown function (DUF327) BMD_5108 PF00196 Bacterial regulatory proteins, luxR family BMD_5108 PF00072 Response regulator receiver domain BMD_5109 PF05384 Sensor protein DegS BMD_5109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_5109 PF07730 Histidine kinase BMD_5110 PF09186 Domain of unknown function (DUF1949) BMD_5110 PF01205 Uncharacterized protein family UPF0029 BMD_5111 PF03816 Cell envelope-related transcriptional attenuator domain BMD_5112 PF00953 Glycosyl transferase family 4 BMD_5114 PF01145 SPFH domain / Band 7 family BMD_5114 PF15975 Flotillin BMD_5115 PF03808 Glycosyl transferase WecB/TagA/CpsF family BMD_5116 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BMD_5116 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BMD_5116 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BMD_5117 PF00483 Nucleotidyl transferase BMD_5119 PF00176 SNF2 family N-terminal domain BMD_5119 PF00271 Helicase conserved C-terminal domain BMD_5119 PF12419 SNF2 Helicase protein BMD_5120 PF01476 LysM domain BMD_5120 PF00877 NlpC/P60 family BMD_5121 PF00436 Single-strand binding protein family BMD_5122 PF14183 YwpF-like protein BMD_5123 PF07977 FabA-like domain BMD_5124 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BMD_5124 PF00460 Flagella basal body rod protein BMD_5125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BMD_5125 PF00460 Flagella basal body rod protein BMD_5127 PF12116 Stage III sporulation protein D BMD_5128 PF01551 Peptidase family M23 BMD_5129 PF08486 Stage II sporulation protein BMD_5130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BMD_5132 PF06612 Protein of unknown function (DUF1146) BMD_5133 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BMD_5133 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BMD_5134 PF02874 ATP synthase alpha/beta family, beta-barrel domain BMD_5134 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BMD_5135 PF00231 ATP synthase BMD_5136 PF02874 ATP synthase alpha/beta family, beta-barrel domain BMD_5136 PF00306 ATP synthase alpha/beta chain, C terminal domain BMD_5136 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BMD_5137 PF00213 ATP synthase delta (OSCP) subunit BMD_5138 PF00430 ATP synthase B/B' CF(0) BMD_5139 PF00137 ATP synthase subunit C BMD_5140 PF00119 ATP synthase A chain BMD_5141 PF03899 ATP synthase I chain BMD_5143 PF00082 Subtilase family BMD_5143 PF05922 Peptidase inhibitor I9 BMD_5143 PF02225 PA domain BMD_5143 PF13860 FlgD Ig-like domain BMD_5144 PF02350 UDP-N-acetylglucosamine 2-epimerase BMD_5146 PF00464 Serine hydroxymethyltransferase BMD_5147 PF04260 Protein of unknown function (DUF436) BMD_5148 PF02502 Ribose/Galactose Isomerase BMD_5149 PF01451 Low molecular weight phosphotyrosine protein phosphatase BMD_5150 PF02659 Putative manganese efflux pump BMD_5151 PF03481 Putative GTP-binding controlling metal-binding BMD_5151 PF01300 Telomere recombination BMD_5153 PF09551 Stage II sporulation protein R (spore_II_R) BMD_5154 PF17827 PrmC N-terminal domain BMD_5154 PF13847 Methyltransferase domain BMD_5155 PF00472 RF-1 domain BMD_5155 PF03462 PCRF domain BMD_5156 PF00265 Thymidine kinase BMD_5157 PF01197 Ribosomal protein L31 BMD_5158 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BMD_5158 PF07498 Rho termination factor, N-terminal domain BMD_5158 PF07497 Rho termination factor, RNA-binding domain BMD_5159 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BMD_5160 PF00923 Transaldolase/Fructose-6-phosphate aldolase BMD_5161 PF01116 Fructose-bisphosphate aldolase class-II BMD_5162 PF00072 Response regulator receiver domain BMD_5163 PF10740 Domain of unknown function (DUF2529) BMD_5164 PF00117 Glutamine amidotransferase class-I BMD_5164 PF06418 CTP synthase N-terminus BMD_5165 PF05066 HB1, ASXL, restriction endonuclease HTH domain BMD_5166 PF01642 Methylmalonyl-CoA mutase BMD_5166 PF02310 B12 binding domain BMD_5168 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BMD_5168 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_5168 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_5169 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BMD_5169 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BMD_5169 PF02770 Acyl-CoA dehydrogenase, middle domain BMD_5170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BMD_5170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BMD_5171 PF02803 Thiolase, C-terminal domain BMD_5171 PF00108 Thiolase, N-terminal domain BMD_5172 PF02754 Cysteine-rich domain BMD_5172 PF13183 4Fe-4S dicluster domain BMD_5173 PF13091 PLD-like domain BMD_5174 PF03851 UV-endonuclease UvdE BMD_5175 PF00750 tRNA synthetases class I (R) BMD_5175 PF03485 Arginyl tRNA synthetase N terminal domain BMD_5175 PF05746 DALR anticodon binding domain BMD_5176 PF09148 Domain of unknown function (DUF1934) BMD_5177 PF00491 Arginase family BMD_5178 PF17284 Spermidine synthase tetramerisation domain BMD_5179 PF00912 Transglycosylase BMD_5179 PF00905 Penicillin binding protein transpeptidase domain BMD_5180 PF08741 YwhD family BMD_5181 PF02163 Peptidase family M50 BMD_5182 PF01361 Tautomerase enzyme BMD_5184 PF01966 HD domain BMD_5185 PF07293 Protein of unknown function (DUF1450) BMD_5187 PF03099 Biotin/lipoate A/B protein ligase family BMD_5188 PF01515 Phosphate acetyl/butaryl transferase BMD_5190 PF07486 Cell Wall Hydrolase BMD_5191 PF09671 Spore coat protein (Spore_GerQ) BMD_5192 PF04241 Protein of unknown function (DUF423) BMD_5194 PF03167 Uracil DNA glycosylase superfamily BMD_5196 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BMD_5196 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BMD_5197 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BMD_5197 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BMD_5198 PF13556 PucR C-terminal helix-turn-helix domain BMD_5198 PF06018 CodY GAF-like domain BMD_5198 PF17853 GGDEF-like domain BMD_5199 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BMD_5199 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BMD_5201 PF08543 Phosphomethylpyrimidine kinase BMD_5203 PF13419 Haloacid dehalogenase-like hydrolase BMD_5204 PF02378 Phosphotransferase system, EIIC BMD_5204 PF00367 phosphotransferase system, EIIB BMD_5204 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BMD_5205 PF03372 Endonuclease/Exonuclease/phosphatase family BMD_5206 PF13439 Glycosyltransferase Family 4 BMD_5206 PF00534 Glycosyl transferases group 1 BMD_5209 PF00892 EamA-like transporter family BMD_5211 PF03023 Lipid II flippase MurJ BMD_5214 PF00664 ABC transporter transmembrane region BMD_5214 PF00005 ABC transporter BMD_5215 PF00005 ABC transporter BMD_5215 PF00664 ABC transporter transmembrane region BMD_5216 PF02322 Cytochrome bd terminal oxidase subunit II BMD_5217 PF01654 Cytochrome bd terminal oxidase subunit I BMD_5218 PF12821 Threonine/Serine exporter, ThrE BMD_5219 PF06738 Putative threonine/serine exporter BMD_5220 PF00356 Bacterial regulatory proteins, lacI family BMD_5222 PF00083 Sugar (and other) transporter BMD_5223 PF00171 Aldehyde dehydrogenase family BMD_5224 PF00696 Amino acid kinase family BMD_5225 PF02554 Carbon starvation protein CstA BMD_5225 PF13722 5TM C-terminal transporter carbon starvation CstA BMD_5226 PF06628 Catalase-related immune-responsive BMD_5226 PF00199 Catalase BMD_5227 PF00989 PAS fold BMD_5227 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_5227 PF00512 His Kinase A (phospho-acceptor) domain BMD_5227 PF16736 Single Cache-like BMD_5228 PF00486 Transcriptional regulatory protein, C terminal BMD_5228 PF00072 Response regulator receiver domain BMD_5229 PF00128 Alpha amylase, catalytic domain BMD_5229 PF09154 Domain of unknown function (DUF1939) BMD_5230 PF00939 Sodium:sulfate symporter transmembrane region BMD_5231 PF10672 S-adenosylmethionine-dependent methyltransferase BMD_5231 PF17785 PUA-like domain BMD_5233 PF00486 Transcriptional regulatory protein, C terminal BMD_5233 PF00072 Response regulator receiver domain BMD_5234 PF00672 HAMP domain BMD_5234 PF00512 His Kinase A (phospho-acceptor) domain BMD_5234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_5237 PF01207 Dihydrouridine synthase (Dus) BMD_5238 PF02590 Predicted SPOUT methyltransferase BMD_5240 PF13180 PDZ domain BMD_5241 PF00753 Metallo-beta-lactamase superfamily BMD_5242 PF09648 YycH protein BMD_5244 PF00672 HAMP domain BMD_5244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BMD_5244 PF00512 His Kinase A (phospho-acceptor) domain BMD_5244 PF13426 PAS domain BMD_5245 PF00486 Transcriptional regulatory protein, C terminal BMD_5245 PF00072 Response regulator receiver domain BMD_5250 PF00709 Adenylosuccinate synthetase BMD_5251 PF03796 DnaB-like helicase C terminal domain BMD_5251 PF00772 DnaB-like helicase N terminal domain BMD_5252 PF01281 Ribosomal protein L9, N-terminal domain BMD_5252 PF03948 Ribosomal protein L9, C-terminal domain BMD_5253 PF02272 DHHA1 domain BMD_5253 PF01368 DHH family BMD_5255 PF01084 Ribosomal protein S18 BMD_5256 PF00436 Single-strand binding protein family BMD_5257 PF01250 Ribosomal protein S6 BMD_5258 PF06071 Protein of unknown function (DUF933) BMD_5258 PF01926 50S ribosome-binding GTPase BMD_5259 PF06107 Bacterial protein of unknown function (DUF951) BMD_5260 PF00924 Mechanosensitive ion channel BMD_5262 PF06866 Protein of unknown function (DUF1256) BMD_5263 PF02195 ParB-like nuclease domain BMD_5263 PF17762 HTH domain found in ParB protein BMD_5264 PF13614 AAA domain BMD_5265 PF17762 HTH domain found in ParB protein BMD_5265 PF02195 ParB-like nuclease domain BMD_5266 PF02527 rRNA small subunit methyltransferase G BMD_5267 PF13932 GidA associated domain BMD_5267 PF01134 Glucose inhibited division protein A BMD_5268 PF12631 MnmE helical domain BMD_5268 PF10396 GTP-binding protein TrmE N-terminus BMD_5268 PF01926 50S ribosome-binding GTPase BMD_5269 PF01424 R3H domain BMD_5269 PF14804 Jag N-terminus BMD_5270 PF02096 60Kd inner membrane protein BMD_5271 PF00825 Ribonuclease P BMD_5272 PF00468 Ribosomal protein L34