BMD_0001 SM00382 ATPases associated with a variety of cellular activities BMD_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BMD_0002 SM00480 DNA polymerase III beta subunit BMD_0005 SM00387 Histidine kinase-like ATPases BMD_0005 SM00433 TopoisomeraseII BMD_0006 SM00434 DNA Topoisomerase IV BMD_0013 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_0013 SM01240 BMD_0013 BMD_0014 SM00936 Penicillin-binding protein 5, C-terminal domain BMD_0021 SM00257 Lysin motif BMD_0021 SM00636 BMD_0021 BMD_0024 SM00382 ATPases associated with a variety of cellular activities BMD_0026 SM00493 BMD_0026 BMD_0054 SM00966 SpoVT / AbrB like domain BMD_0057 SM00493 BMD_0057 BMD_0058 SM00650 Ribosomal RNA adenine dimethylases BMD_0068 SM01400 BMD_0068 BMD_0072 SM00487 DEAD-like helicases superfamily BMD_0072 SM00490 helicase superfamily c-terminal domain BMD_0072 SM00982 BMD_0072 BMD_0072 SM01058 CarD-like/TRCF domain BMD_0074 SM00966 SpoVT / AbrB like domain BMD_0077 SM00363 S4 RNA-binding domain BMD_0081 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_0084 SM00331 Sigma factor PP2C-like phosphatases BMD_0084 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BMD_0086 SM00220 Serine/Threonine protein kinases, catalytic domain BMD_0087 SM00977 TilS substrate C-terminal domain BMD_0089 SM00382 ATPases associated with a variety of cellular activities BMD_0096 SM00905 Dihydroneopterin aldolase BMD_0105 SM00382 ATPases associated with a variety of cellular activities BMD_0105 SM01086 C-terminal, D2-small domain, of ClpB protein BMD_0106 SM00382 ATPases associated with a variety of cellular activities BMD_0108 SM00670 Large family of predicted nucleotide-binding domains BMD_0113 SM00840 BMD_0113 BMD_0114 SM00535 Ribonuclease III family BMD_0115 SM00967 RNA 2'-O ribose methyltransferase substrate binding BMD_0117 SM00421 helix_turn_helix, Lux Regulon BMD_0120 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BMD_0120 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BMD_0121 SM00649 Ribosomal protein L11/L12 BMD_0127 SM00663 RNA polymerase I subunit A N-terminus BMD_0131 SM00838 Elongation factor G C-terminus BMD_0131 SM00889 Elongation factor G, domain IV BMD_0133 SM01403 BMD_0133 BMD_0137 SM01382 BMD_0137 BMD_0137 SM01383 BMD_0137 BMD_0140 SM00322 K homology RNA-binding domain BMD_0144 SM01374 BMD_0144 BMD_0145 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BMD_0157 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_0160 SM00662 RNA polymerases D BMD_0162 SM00382 ATPases associated with a variety of cellular activities BMD_0163 SM00382 ATPases associated with a variety of cellular activities BMD_0169 SM00646 BMD_0169 BMD_0173 SM01251 BMD_0173 BMD_0195 SM00287 Bacterial SH3 domain homologues BMD_0203 SM00530 Helix-turn-helix XRE-family like proteins BMD_0204 SM00382 ATPases associated with a variety of cellular activities BMD_0209 SM00448 cheY-homologous receiver domain BMD_0209 SM00862 Transcriptional regulatory protein, C terminal BMD_0210 SM00387 Histidine kinase-like ATPases BMD_0210 SM00388 His Kinase A (phosphoacceptor) domain BMD_0215 SM00487 DEAD-like helicases superfamily BMD_0215 SM00490 helicase superfamily c-terminal domain BMD_0220 SM01005 Alanine racemase, C-terminal domain BMD_0225 SM00387 Histidine kinase-like ATPases BMD_0226 SM00331 Sigma factor PP2C-like phosphatases BMD_0230 SM00331 Sigma factor PP2C-like phosphatases BMD_0231 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_0231 SM00732 Likely ribonuclease with RNase H fold. BMD_0233 SM00731 SprT homologues. BMD_0254 SM00382 ATPases associated with a variety of cellular activities BMD_0255 SM00881 CoA binding domain BMD_0260 SM00883 Chaperonin 10 Kd subunit BMD_0264 SM00460 Transglutaminase/protease-like homologues BMD_0271 SM01001 AIR carboxylase BMD_0273 SM00998 Adenylosuccinate lyase C-terminus BMD_0276 SM01211 BMD_0276 BMD_0281 SM00798 AICARFT/IMPCHase bienzyme BMD_0281 SM00851 MGS-like domain BMD_0282 SM01209 BMD_0282 BMD_0282 SM01210 BMD_0282 BMD_0289 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMD_0289 SM00292 breast cancer carboxy-terminal domain BMD_0289 SM00532 Ligase N family BMD_0294 SM00845 GatB domain BMD_0295 SM00046 Diacylglycerol kinase catalytic domain (presumed) BMD_0303 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_0303 SM00387 Histidine kinase-like ATPases BMD_0303 SM00388 His Kinase A (phosphoacceptor) domain BMD_0307 SM00422 helix_turn_helix, mercury resistance BMD_0311 SM00382 ATPases associated with a variety of cellular activities BMD_0312 SM00062 Bacterial periplasmic substrate-binding proteins BMD_0312 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BMD_0319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_0319 SM00387 Histidine kinase-like ATPases BMD_0319 SM00388 His Kinase A (phosphoacceptor) domain BMD_0320 SM00448 cheY-homologous receiver domain BMD_0320 SM00862 Transcriptional regulatory protein, C terminal BMD_0321 SM00387 Histidine kinase-like ATPases BMD_0321 SM00388 His Kinase A (phosphoacceptor) domain BMD_0322 SM00448 cheY-homologous receiver domain BMD_0322 SM00862 Transcriptional regulatory protein, C terminal BMD_0325 SM00382 ATPases associated with a variety of cellular activities BMD_0326 SM00014 Acid phosphatase homologues BMD_0340 SM00091 PAS domain BMD_0340 SM00387 Histidine kinase-like ATPases BMD_0341 SM00448 cheY-homologous receiver domain BMD_0344 SM00091 PAS domain BMD_0344 SM00387 Histidine kinase-like ATPases BMD_0344 SM00388 His Kinase A (phosphoacceptor) domain BMD_0345 SM00487 DEAD-like helicases superfamily BMD_0345 SM00490 helicase superfamily c-terminal domain BMD_0357 SM01065 Starch binding domain BMD_0361 SM00382 ATPases associated with a variety of cellular activities BMD_0372 SM00226 Low molecular weight phosphatase family BMD_0377 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_0392 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_0392 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_0392 SM00387 Histidine kinase-like ATPases BMD_0392 SM00388 His Kinase A (phosphoacceptor) domain BMD_0398 SM00822 BMD_0398 BMD_0403 SM00478 endonuclease III BMD_0403 SM00525 BMD_0403 BMD_0409 SM00382 ATPases associated with a variety of cellular activities BMD_0412 SM00382 ATPases associated with a variety of cellular activities BMD_0440 SM00873 B3/4 domain BMD_0441 SM00567 E-Z type HEAT repeats BMD_0444 SM00763 PrkA AAA domain BMD_0460 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_0460 SM00876 Biotin and Thiamin Synthesis associated domain BMD_0462 SM00382 ATPases associated with a variety of cellular activities BMD_0469 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMD_0478 SM00257 Lysin motif BMD_0481 SM00287 Bacterial SH3 domain homologues BMD_0484 SM00155 Phospholipase D. Active site motifs. BMD_0489 SM00354 helix_turn _helix lactose operon repressor BMD_0496 SM00354 helix_turn _helix lactose operon repressor BMD_0501 SM00344 helix_turn_helix ASNC type BMD_0507 SM00363 S4 RNA-binding domain BMD_0511 SM00864 Tubulin/FtsZ family, GTPase domain BMD_0511 SM00865 Tubulin/FtsZ family, C-terminal domain BMD_0518 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BMD_0522 SM00829 Enoylreductase BMD_0526 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BMD_0526 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_0543 SM00829 Enoylreductase BMD_0545 SM00382 ATPases associated with a variety of cellular activities BMD_0547 SM00062 Bacterial periplasmic substrate-binding proteins BMD_0547 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BMD_0557 SM00855 Phosphoglycerate mutase family BMD_0560 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_0560 SM01091 Transporter associated domain BMD_0563 SM00382 ATPases associated with a variety of cellular activities BMD_0573 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_0576 SM00411 bacterial (prokaryotic) histone like domain BMD_0578 SM00382 ATPases associated with a variety of cellular activities BMD_0580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_0585 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_0593 SM00382 ATPases associated with a variety of cellular activities BMD_0597 SM00014 Acid phosphatase homologues BMD_0607 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_0608 SM00342 helix_turn_helix, arabinose operon control protein BMD_0608 SM00448 cheY-homologous receiver domain BMD_0610 SM00849 Metallo-beta-lactamase superfamily BMD_0638 SM00914 BMD_0638 BMD_0641 SM00822 BMD_0641 BMD_0660 SM00642 Alpha-amylase domain BMD_0661 SM00354 helix_turn _helix lactose operon repressor BMD_0666 SM00382 ATPases associated with a variety of cellular activities BMD_0677 SM00100 Cyclic nucleotide-monophosphate binding domain BMD_0677 SM00419 helix_turn_helix, cAMP Regulatory protein BMD_0678 SM00859 Semialdehyde dehydrogenase, NAD binding domain BMD_0682 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BMD_0683 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BMD_0687 SM00382 ATPases associated with a variety of cellular activities BMD_0687 SM01086 C-terminal, D2-small domain, of ClpB protein BMD_0688 SM00342 helix_turn_helix, arabinose operon control protein BMD_0697 SM00825 Beta-ketoacyl synthase BMD_0699 SM00382 ATPases associated with a variety of cellular activities BMD_0700 SM00382 ATPases associated with a variety of cellular activities BMD_0710 SM00382 ATPases associated with a variety of cellular activities BMD_0720 SM00155 Phospholipase D. Active site motifs. BMD_0727 SM01118 BMD_0727 BMD_0729 SM00954 Region found in RelA / SpoT proteins BMD_0733 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_0733 SM00924 MgtE intracellular N domain BMD_0753 SM01350 BMD_0753 BMD_0759 SM00344 helix_turn_helix ASNC type BMD_0763 SM00487 DEAD-like helicases superfamily BMD_0763 SM00490 helicase superfamily c-terminal domain BMD_0767 SM00849 Metallo-beta-lactamase superfamily BMD_0774 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMD_0774 SM00387 Histidine kinase-like ATPases BMD_0775 SM00448 cheY-homologous receiver domain BMD_0775 SM00850 LytTr DNA-binding domain BMD_0779 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BMD_0796 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BMD_0802 SM00448 cheY-homologous receiver domain BMD_0803 SM00387 Histidine kinase-like ATPases BMD_0816 SM00382 ATPases associated with a variety of cellular activities BMD_0820 SM00382 ATPases associated with a variety of cellular activities BMD_0835 SM00091 PAS domain BMD_0835 SM00387 Histidine kinase-like ATPases BMD_0836 SM00448 cheY-homologous receiver domain BMD_0843 SM00530 Helix-turn-helix XRE-family like proteins BMD_0853 SM00091 PAS domain BMD_0853 SM00387 Histidine kinase-like ATPases BMD_0854 SM00448 cheY-homologous receiver domain BMD_0860 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_0860 SM00382 ATPases associated with a variety of cellular activities BMD_0877 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BMD_0877 SM01232 BMD_0877 BMD_0886 SM00382 ATPases associated with a variety of cellular activities BMD_0891 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMD_0897 SM00899 BMD_0897 BMD_0902 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_0905 SM00382 ATPases associated with a variety of cellular activities BMD_0906 SM00382 ATPases associated with a variety of cellular activities BMD_0911 SM00346 helix_turn_helix isocitrate lyase regulation BMD_0913 SM00822 BMD_0913 BMD_0915 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_0920 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_0921 SM00354 helix_turn _helix lactose operon repressor BMD_0924 SM00382 ATPases associated with a variety of cellular activities BMD_0928 SM00903 Flavin reductase like domain BMD_0935 SM00267 diguanylate cyclase BMD_0935 SM00448 cheY-homologous receiver domain BMD_0940 SM00448 cheY-homologous receiver domain BMD_0941 SM00387 Histidine kinase-like ATPases BMD_0941 SM00388 His Kinase A (phosphoacceptor) domain BMD_0941 SM00448 cheY-homologous receiver domain BMD_0944 SM00855 Phosphoglycerate mutase family BMD_0951 SM00354 helix_turn _helix lactose operon repressor BMD_0958 SM00642 Alpha-amylase domain BMD_0959 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_0959 SM00866 BMD_0959 BMD_0960 SM00796 Allophanate hydrolase subunit 1 BMD_0961 SM00797 Allophanate hydrolase subunit 2 BMD_0973 SM00829 Enoylreductase BMD_0982 SM00796 Allophanate hydrolase subunit 1 BMD_0982 SM00797 Allophanate hydrolase subunit 2 BMD_0982 SM00878 Biotin carboxylase C-terminal domain BMD_0987 SM00357 Cold shock protein domain BMD_0996 SM00267 diguanylate cyclase BMD_1005 SM00854 Bacterial capsule synthesis protein PGA_cap BMD_1050 SM00052 Putative diguanylate phosphodiesterase BMD_1051 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_1051 SM00091 PAS domain BMD_1051 SM00267 diguanylate cyclase BMD_1060 SM00387 Histidine kinase-like ATPases BMD_1061 SM00448 cheY-homologous receiver domain BMD_1066 SM00646 BMD_1066 BMD_1070 SM00914 BMD_1070 BMD_1072 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMD_1075 SM00382 ATPases associated with a variety of cellular activities BMD_1082 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_1088 SM00052 Putative diguanylate phosphodiesterase BMD_1088 SM00267 diguanylate cyclase BMD_1088 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_1094 SM00854 Bacterial capsule synthesis protein PGA_cap BMD_1108 SM00530 Helix-turn-helix XRE-family like proteins BMD_1122 SM00984 UDP binding domain BMD_1133 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_1133 SM00895 BMD_1133 BMD_1147 SM00465 GIY-YIG type nucleases (URI domain) BMD_1149 SM00835 Cupin BMD_1158 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_1158 SM00866 BMD_1158 BMD_1169 SM00382 ATPases associated with a variety of cellular activities BMD_1170 SM01091 Transporter associated domain BMD_1171 SM00422 helix_turn_helix, mercury resistance BMD_1194 SM00387 Histidine kinase-like ATPases BMD_1195 SM00448 cheY-homologous receiver domain BMD_1195 SM00850 LytTr DNA-binding domain BMD_1196 SM00382 ATPases associated with a variety of cellular activities BMD_1200 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_1205 SM00098 Alkaline phosphatase homologues BMD_1206 SM00448 cheY-homologous receiver domain BMD_1206 SM00850 LytTr DNA-binding domain BMD_1207 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_1207 SM00091 PAS domain BMD_1207 SM00387 Histidine kinase-like ATPases BMD_1207 SM00388 His Kinase A (phosphoacceptor) domain BMD_1207 SM00448 cheY-homologous receiver domain BMD_1215 SM00822 BMD_1215 BMD_1220 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_1221 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_1221 SM00895 BMD_1221 BMD_1227 SM00091 PAS domain BMD_1227 SM00387 Histidine kinase-like ATPases BMD_1227 SM00388 His Kinase A (phosphoacceptor) domain BMD_1236 SM01007 Class II Aldolase and Adducin N-terminal domain BMD_1239 SM00382 ATPases associated with a variety of cellular activities BMD_1245 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_1247 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_1247 SM00091 PAS domain BMD_1247 SM00387 Histidine kinase-like ATPases BMD_1247 SM00388 His Kinase A (phosphoacceptor) domain BMD_1249 SM00382 ATPases associated with a variety of cellular activities BMD_1249 SM01086 C-terminal, D2-small domain, of ClpB protein BMD_1253 SM00822 BMD_1253 BMD_1265 SM00257 Lysin motif BMD_1273 SM01018 B12 binding domain BMD_1281 SM01061 CAT RNA binding domain BMD_1293 SM00914 BMD_1293 BMD_1296 SM00260 Two component signalling adaptor domain BMD_1296 SM00448 cheY-homologous receiver domain BMD_1298 SM00257 Lysin motif BMD_1304 SM00052 Putative diguanylate phosphodiesterase BMD_1316 SM01350 BMD_1316 BMD_1317 SM00382 ATPases associated with a variety of cellular activities BMD_1318 SM00382 ATPases associated with a variety of cellular activities BMD_1320 SM00849 Metallo-beta-lactamase superfamily BMD_1327 SM00861 Transketolase, pyrimidine binding domain BMD_1340 SM00838 Elongation factor G C-terminus BMD_1346 SM00670 Large family of predicted nucleotide-binding domains BMD_1350 SM00878 Biotin carboxylase C-terminal domain BMD_1359 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_1366 SM00851 MGS-like domain BMD_1374 SM00479 BMD_1374 BMD_1374 SM00487 DEAD-like helicases superfamily BMD_1374 SM00491 BMD_1374 BMD_1381 SM00478 endonuclease III BMD_1381 SM00525 BMD_1381 BMD_1404 SM00357 Cold shock protein domain BMD_1407 SM00267 diguanylate cyclase BMD_1409 SM00487 DEAD-like helicases superfamily BMD_1409 SM00490 helicase superfamily c-terminal domain BMD_1418 SM00387 Histidine kinase-like ATPases BMD_1419 SM00421 helix_turn_helix, Lux Regulon BMD_1419 SM00448 cheY-homologous receiver domain BMD_1420 SM00642 Alpha-amylase domain BMD_1421 SM00981 BMD_1421 BMD_1428 SM00382 ATPases associated with a variety of cellular activities BMD_1430 SM00491 BMD_1430 BMD_1450 SM00357 Cold shock protein domain BMD_1453 SM00028 Tetratricopeptide repeats BMD_1463 SM00382 ATPases associated with a variety of cellular activities BMD_1467 SM00052 Putative diguanylate phosphodiesterase BMD_1467 SM00091 PAS domain BMD_1467 SM00267 diguanylate cyclase BMD_1472 SM00421 helix_turn_helix, Lux Regulon BMD_1472 SM00448 cheY-homologous receiver domain BMD_1477 SM00155 Phospholipase D. Active site motifs. BMD_1480 SM00257 Lysin motif BMD_1480 SM00636 BMD_1480 BMD_1491 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_1491 SM00866 BMD_1491 BMD_1496 SM00098 Alkaline phosphatase homologues BMD_1500 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_1503 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_1510 SM00382 ATPases associated with a variety of cellular activities BMD_1519 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMD_1523 SM00382 ATPases associated with a variety of cellular activities BMD_1527 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMD_1527 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_1527 SM00387 Histidine kinase-like ATPases BMD_1527 SM00388 His Kinase A (phosphoacceptor) domain BMD_1527 SM00448 cheY-homologous receiver domain BMD_1528 SM00138 Methyltransferase, chemotaxis proteins BMD_1529 SM00331 Sigma factor PP2C-like phosphatases BMD_1529 SM00448 cheY-homologous receiver domain BMD_1532 SM00100 Cyclic nucleotide-monophosphate binding domain BMD_1537 SM00640 Glycosyl hydrolases family 32 BMD_1547 SM00849 Metallo-beta-lactamase superfamily BMD_1554 SM00849 Metallo-beta-lactamase superfamily BMD_1564 SM00354 helix_turn _helix lactose operon repressor BMD_1566 SM00640 Glycosyl hydrolases family 32 BMD_1569 SM00382 ATPases associated with a variety of cellular activities BMD_1574 SM00640 Glycosyl hydrolases family 32 BMD_1577 SM00062 Bacterial periplasmic substrate-binding proteins BMD_1579 SM00382 ATPases associated with a variety of cellular activities BMD_1579 SM00930 BMD_1579 BMD_1585 SM00382 ATPases associated with a variety of cellular activities BMD_1585 SM00930 BMD_1585 BMD_1601 SM01329 BMD_1601 BMD_1605 SM00382 ATPases associated with a variety of cellular activities BMD_1613 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_1615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_1641 SM00387 Histidine kinase-like ATPases BMD_1641 SM00388 His Kinase A (phosphoacceptor) domain BMD_1642 SM00448 cheY-homologous receiver domain BMD_1642 SM00862 Transcriptional regulatory protein, C terminal BMD_1643 SM00014 Acid phosphatase homologues BMD_1653 SM00091 PAS domain BMD_1653 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_1653 SM00382 ATPases associated with a variety of cellular activities BMD_1656 SM00354 helix_turn _helix lactose operon repressor BMD_1670 SM00091 PAS domain BMD_1671 SM00344 helix_turn_helix ASNC type BMD_1676 SM00287 Bacterial SH3 domain homologues BMD_1682 SM00357 Cold shock protein domain BMD_1694 SM01130 BMD_1694 BMD_1697 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_1700 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_1705 SM00382 ATPases associated with a variety of cellular activities BMD_1706 SM00382 ATPases associated with a variety of cellular activities BMD_1710 SM00387 Histidine kinase-like ATPases BMD_1713 SM00257 Lysin motif BMD_1713 SM00636 BMD_1713 BMD_1721 SM00849 Metallo-beta-lactamase superfamily BMD_1725 SM00710 Parallel beta-helix repeats BMD_1726 SM00382 ATPases associated with a variety of cellular activities BMD_1727 SM00226 Low molecular weight phosphatase family BMD_1730 SM00357 Cold shock protein domain BMD_1744 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_1755 SM00422 helix_turn_helix, mercury resistance BMD_1763 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_1763 SM00387 Histidine kinase-like ATPases BMD_1763 SM00388 His Kinase A (phosphoacceptor) domain BMD_1764 SM00448 cheY-homologous receiver domain BMD_1764 SM00862 Transcriptional regulatory protein, C terminal BMD_1797 SM00642 Alpha-amylase domain BMD_1800 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_1827 SM00860 SMI1 / KNR4 family BMD_1835 SM00382 ATPases associated with a variety of cellular activities BMD_1836 SM00382 ATPases associated with a variety of cellular activities BMD_1848 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BMD_1852 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_1873 SM00861 Transketolase, pyrimidine binding domain BMD_1876 SM00382 ATPases associated with a variety of cellular activities BMD_1877 SM00829 Enoylreductase BMD_1879 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_1890 SM00914 BMD_1890 BMD_1892 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_1892 SM00387 Histidine kinase-like ATPases BMD_1892 SM00388 His Kinase A (phosphoacceptor) domain BMD_1893 SM00448 cheY-homologous receiver domain BMD_1893 SM00862 Transcriptional regulatory protein, C terminal BMD_1905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_1907 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BMD_1907 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BMD_1907 SM00493 BMD_1907 BMD_1914 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_1914 SM00895 BMD_1914 BMD_1915 SM01329 BMD_1915 BMD_1920 SM00028 Tetratricopeptide repeats BMD_1920 SM00530 Helix-turn-helix XRE-family like proteins BMD_1928 SM00450 Rhodanese Homology Domain BMD_1941 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_1942 SM00382 ATPases associated with a variety of cellular activities BMD_1943 SM00567 E-Z type HEAT repeats BMD_1943 SM00932 Scaffold protein Nfu/NifU N terminal BMD_1955 SM00855 Phosphoglycerate mutase family BMD_1959 SM00422 helix_turn_helix, mercury resistance BMD_1961 SM00833 Cobalamin synthesis protein cobW C-terminal domain BMD_1963 SM00465 GIY-YIG type nucleases (URI domain) BMD_1965 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BMD_1965 SM00475 5'-3' exonuclease BMD_1974 SM00966 SpoVT / AbrB like domain BMD_1990 SM00387 Histidine kinase-like ATPases BMD_1990 SM00388 His Kinase A (phosphoacceptor) domain BMD_1993 SM00642 Alpha-amylase domain BMD_2005 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_2009 SM00448 cheY-homologous receiver domain BMD_2009 SM00862 Transcriptional regulatory protein, C terminal BMD_2010 SM00387 Histidine kinase-like ATPases BMD_2010 SM00388 His Kinase A (phosphoacceptor) domain BMD_2014 SM00919 Malic enzyme, NAD binding domain BMD_2014 SM01274 BMD_2014 BMD_2021 SM00062 Bacterial periplasmic substrate-binding proteins BMD_2024 SM00382 ATPases associated with a variety of cellular activities BMD_2025 SM00904 Riboflavin kinase BMD_2028 SM00646 BMD_2028 BMD_2031 SM00644 BMD_2031 BMD_2037 SM00919 Malic enzyme, NAD binding domain BMD_2037 SM01274 BMD_2037 BMD_2047 SM00422 helix_turn_helix, mercury resistance BMD_2062 SM00155 Phospholipase D. Active site motifs. BMD_2064 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2074 SM00448 cheY-homologous receiver domain BMD_2074 SM00862 Transcriptional regulatory protein, C terminal BMD_2075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_2075 SM00387 Histidine kinase-like ATPases BMD_2075 SM00388 His Kinase A (phosphoacceptor) domain BMD_2081 SM00382 ATPases associated with a variety of cellular activities BMD_2086 SM00420 helix_turn_helix, Deoxyribose operon repressor BMD_2086 SM01134 BMD_2086 BMD_2093 SM00422 helix_turn_helix, mercury resistance BMD_2095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_2101 SM00257 Lysin motif BMD_2102 SM00354 helix_turn _helix lactose operon repressor BMD_2119 SM00530 Helix-turn-helix XRE-family like proteins BMD_2123 SM00382 ATPases associated with a variety of cellular activities BMD_2124 SM00327 von Willebrand factor (vWF) type A domain BMD_2126 SM01038 Beta galactosidase small chain BMD_2127 SM00342 helix_turn_helix, arabinose operon control protein BMD_2131 SM00382 ATPases associated with a variety of cellular activities BMD_2145 SM00448 cheY-homologous receiver domain BMD_2145 SM00862 Transcriptional regulatory protein, C terminal BMD_2146 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_2146 SM00387 Histidine kinase-like ATPases BMD_2146 SM00388 His Kinase A (phosphoacceptor) domain BMD_2147 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_2156 SM00530 Helix-turn-helix XRE-family like proteins BMD_2164 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_2171 SM00342 helix_turn_helix, arabinose operon control protein BMD_2173 SM00382 ATPases associated with a variety of cellular activities BMD_2178 SM00382 ATPases associated with a variety of cellular activities BMD_2182 SM00354 helix_turn _helix lactose operon repressor BMD_2189 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BMD_2189 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BMD_2189 SM00493 BMD_2189 BMD_2195 SM00155 Phospholipase D. Active site motifs. BMD_2212 SM00341 Helicase and RNase D C-terminal BMD_2212 SM00487 DEAD-like helicases superfamily BMD_2212 SM00490 helicase superfamily c-terminal domain BMD_2212 SM00956 BMD_2212 BMD_2213 SM00091 PAS domain BMD_2213 SM00382 ATPases associated with a variety of cellular activities BMD_2217 SM00490 helicase superfamily c-terminal domain BMD_2220 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BMD_2225 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_2226 SM00382 ATPases associated with a variety of cellular activities BMD_2232 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2235 SM00849 Metallo-beta-lactamase superfamily BMD_2238 SM00257 Lysin motif BMD_2239 SM00382 ATPases associated with a variety of cellular activities BMD_2242 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_2242 SM00138 Methyltransferase, chemotaxis proteins BMD_2242 SM00387 Histidine kinase-like ATPases BMD_2242 SM00388 His Kinase A (phosphoacceptor) domain BMD_2264 SM00028 Tetratricopeptide repeats BMD_2267 SM01266 BMD_2267 BMD_2275 SM00479 BMD_2275 BMD_2281 SM00641 Glycosyl hydrolases family 25 BMD_2283 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_2283 SM00091 PAS domain BMD_2283 SM00387 Histidine kinase-like ATPases BMD_2283 SM00388 His Kinase A (phosphoacceptor) domain BMD_2292 SM00387 Histidine kinase-like ATPases BMD_2293 SM00448 cheY-homologous receiver domain BMD_2313 SM00091 PAS domain BMD_2313 SM00387 Histidine kinase-like ATPases BMD_2313 SM00388 His Kinase A (phosphoacceptor) domain BMD_2316 SM00822 BMD_2316 BMD_2327 SM00829 Enoylreductase BMD_2331 SM00882 Coenzyme A transferase BMD_2332 SM00882 Coenzyme A transferase BMD_2342 SM00849 Metallo-beta-lactamase superfamily BMD_2349 SM01209 BMD_2349 BMD_2364 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2367 SM00382 ATPases associated with a variety of cellular activities BMD_2373 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_2373 SM00866 BMD_2373 BMD_2376 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_2377 SM00849 Metallo-beta-lactamase superfamily BMD_2379 SM00450 Rhodanese Homology Domain BMD_2389 SM00894 Excalibur calcium-binding domain BMD_2402 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_2403 SM00641 Glycosyl hydrolases family 25 BMD_2406 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_2411 SM00849 Metallo-beta-lactamase superfamily BMD_2413 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_2435 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2441 SM00479 BMD_2441 BMD_2447 SM00838 Elongation factor G C-terminus BMD_2447 SM00889 Elongation factor G, domain IV BMD_2455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BMD_2455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_2463 SM00878 Biotin carboxylase C-terminal domain BMD_2465 SM00797 Allophanate hydrolase subunit 2 BMD_2466 SM00796 Allophanate hydrolase subunit 1 BMD_2470 SM00642 Alpha-amylase domain BMD_2471 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_2486 SM00487 DEAD-like helicases superfamily BMD_2486 SM00490 helicase superfamily c-terminal domain BMD_2489 SM00421 helix_turn_helix, Lux Regulon BMD_2489 SM00448 cheY-homologous receiver domain BMD_2490 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMD_2493 SM00530 Helix-turn-helix XRE-family like proteins BMD_2495 SM00773 Proposed nucleic acid binding domain BMD_2499 SM01131 BMD_2499 BMD_2504 SM00563 Phosphate acyltransferases BMD_2514 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2533 SM00434 DNA Topoisomerase IV BMD_2534 SM00387 Histidine kinase-like ATPases BMD_2534 SM00433 TopoisomeraseII BMD_2535 SM00881 CoA binding domain BMD_2536 SM01207 BMD_2536 BMD_2550 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BMD_2557 SM01092 CO dehydrogenase flavoprotein C-terminal domain BMD_2558 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BMD_2571 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2583 SM00422 helix_turn_helix, mercury resistance BMD_2585 SM00947 Carbonic anhydrase BMD_2587 SM00448 cheY-homologous receiver domain BMD_2587 SM00862 Transcriptional regulatory protein, C terminal BMD_2588 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_2588 SM00387 Histidine kinase-like ATPases BMD_2588 SM00388 His Kinase A (phosphoacceptor) domain BMD_2590 SM00860 SMI1 / KNR4 family BMD_2614 SM00914 BMD_2614 BMD_2620 SM00919 Malic enzyme, NAD binding domain BMD_2620 SM01274 BMD_2620 BMD_2623 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMD_2638 SM00914 BMD_2638 BMD_2643 SM00382 ATPases associated with a variety of cellular activities BMD_2645 SM00421 helix_turn_helix, Lux Regulon BMD_2645 SM00448 cheY-homologous receiver domain BMD_2659 SM00382 ATPases associated with a variety of cellular activities BMD_2663 SM00248 ankyrin repeats BMD_2666 SM00248 ankyrin repeats BMD_2677 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2682 SM00420 helix_turn_helix, Deoxyribose operon repressor BMD_2682 SM01134 BMD_2682 BMD_2692 SM00382 ATPases associated with a variety of cellular activities BMD_2695 SM00357 Cold shock protein domain BMD_2696 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_2698 SM00357 Cold shock protein domain BMD_2705 SM00829 Enoylreductase BMD_2707 SM00850 LytTr DNA-binding domain BMD_2710 SM00257 Lysin motif BMD_2713 SM00835 Cupin BMD_2724 SM00860 SMI1 / KNR4 family BMD_2736 SM00382 ATPases associated with a variety of cellular activities BMD_2741 SM00354 helix_turn _helix lactose operon repressor BMD_2784 SM00411 bacterial (prokaryotic) histone like domain BMD_2787 SM00914 BMD_2787 BMD_2791 SM00357 Cold shock protein domain BMD_2792 SM00487 DEAD-like helicases superfamily BMD_2792 SM00490 helicase superfamily c-terminal domain BMD_2794 SM00357 Cold shock protein domain BMD_2801 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_2806 SM00062 Bacterial periplasmic substrate-binding proteins BMD_2814 SM01133 BMD_2814 BMD_2815 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BMD_2818 SM00507 HNH nucleases BMD_2823 SM01207 BMD_2823 BMD_2827 SM00849 Metallo-beta-lactamase superfamily BMD_2837 SM00854 Bacterial capsule synthesis protein PGA_cap BMD_2839 SM00052 Putative diguanylate phosphodiesterase BMD_2854 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_2854 SM00895 BMD_2854 BMD_2859 SM01091 Transporter associated domain BMD_2864 SM00382 ATPases associated with a variety of cellular activities BMD_2865 SM00382 ATPases associated with a variety of cellular activities BMD_2874 SM00318 Staphylococcal nuclease homologues BMD_2875 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BMD_2888 SM00346 helix_turn_helix isocitrate lyase regulation BMD_2900 SM00382 ATPases associated with a variety of cellular activities BMD_2920 SM00387 Histidine kinase-like ATPases BMD_2920 SM00388 His Kinase A (phosphoacceptor) domain BMD_2921 SM00448 cheY-homologous receiver domain BMD_2921 SM00862 Transcriptional regulatory protein, C terminal BMD_2926 SM00861 Transketolase, pyrimidine binding domain BMD_2934 SM00871 Bacterial transcription activator, effector binding domain BMD_2938 SM00382 ATPases associated with a variety of cellular activities BMD_2939 SM00382 ATPases associated with a variety of cellular activities BMD_2943 SM00938 Nitrogen regulatory protein P-II BMD_2955 SM01324 BMD_2955 BMD_2962 SM00382 ATPases associated with a variety of cellular activities BMD_2971 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMD_2972 SM00354 helix_turn _helix lactose operon repressor BMD_2980 SM00563 Phosphate acyltransferases BMD_2988 SM00988 UreE urease accessory protein, N-terminal domain BMD_2993 SM00257 Lysin motif BMD_2994 SM00257 Lysin motif BMD_3003 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3007 SM00382 ATPases associated with a variety of cellular activities BMD_3020 SM01091 Transporter associated domain BMD_3022 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_3030 SM00830 Chorismate mutase type II BMD_3040 SM01060 BMD_3040 BMD_3056 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_3062 SM00287 Bacterial SH3 domain homologues BMD_3062 SM00646 BMD_3062 BMD_3064 SM00966 SpoVT / AbrB like domain BMD_3067 SM00240 Forkhead associated domain BMD_3067 SM00862 Transcriptional regulatory protein, C terminal BMD_3075 SM00046 Diacylglycerol kinase catalytic domain (presumed) BMD_3081 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3085 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_3097 SM00422 helix_turn_helix, mercury resistance BMD_3100 SM00870 BMD_3100 BMD_3101 SM00530 Helix-turn-helix XRE-family like proteins BMD_3105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_3115 SM00919 Malic enzyme, NAD binding domain BMD_3115 SM01274 BMD_3115 BMD_3126 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_3127 SM00422 helix_turn_helix, mercury resistance BMD_3163 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_3168 SM00257 Lysin motif BMD_3168 SM00646 BMD_3168 BMD_3180 SM00829 Enoylreductase BMD_3182 SM00871 Bacterial transcription activator, effector binding domain BMD_3204 SM00357 Cold shock protein domain BMD_3217 SM00382 ATPases associated with a variety of cellular activities BMD_3220 SM00257 Lysin motif BMD_3229 SM00420 helix_turn_helix, Deoxyribose operon repressor BMD_3229 SM01134 BMD_3229 BMD_3232 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BMD_3232 SM00534 ATPase domain of DNA mismatch repair MUTS family BMD_3235 SM00530 Helix-turn-helix XRE-family like proteins BMD_3238 SM00354 helix_turn _helix lactose operon repressor BMD_3241 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_3256 SM00342 helix_turn_helix, arabinose operon control protein BMD_3258 SM00421 helix_turn_helix, Lux Regulon BMD_3258 SM00448 cheY-homologous receiver domain BMD_3266 SM01350 BMD_3266 BMD_3267 SM00861 Transketolase, pyrimidine binding domain BMD_3273 SM00382 ATPases associated with a variety of cellular activities BMD_3275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_3275 SM00387 Histidine kinase-like ATPases BMD_3275 SM00388 His Kinase A (phosphoacceptor) domain BMD_3276 SM00448 cheY-homologous receiver domain BMD_3276 SM00862 Transcriptional regulatory protein, C terminal BMD_3280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMD_3280 SM00387 Histidine kinase-like ATPases BMD_3280 SM00388 His Kinase A (phosphoacceptor) domain BMD_3286 SM00422 helix_turn_helix, mercury resistance BMD_3292 SM00342 helix_turn_helix, arabinose operon control protein BMD_3301 SM00382 ATPases associated with a variety of cellular activities BMD_3323 SM00062 Bacterial periplasmic substrate-binding proteins BMD_3324 SM00382 ATPases associated with a variety of cellular activities BMD_3333 SM00829 Enoylreductase BMD_3334 SM00448 cheY-homologous receiver domain BMD_3334 SM00862 Transcriptional regulatory protein, C terminal BMD_3335 SM00387 Histidine kinase-like ATPases BMD_3336 SM00382 ATPases associated with a variety of cellular activities BMD_3344 SM00450 Rhodanese Homology Domain BMD_3344 SM00849 Metallo-beta-lactamase superfamily BMD_3345 SM00450 Rhodanese Homology Domain BMD_3346 SM00450 Rhodanese Homology Domain BMD_3347 SM00450 Rhodanese Homology Domain BMD_3358 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3358 SM00866 BMD_3358 BMD_3362 SM00894 Excalibur calcium-binding domain BMD_3364 SM00530 Helix-turn-helix XRE-family like proteins BMD_3402 SM00357 Cold shock protein domain BMD_3404 SM00357 Cold shock protein domain BMD_3409 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_3413 SM00530 Helix-turn-helix XRE-family like proteins BMD_3421 SM01001 AIR carboxylase BMD_3442 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_3442 SM00387 Histidine kinase-like ATPases BMD_3442 SM00388 His Kinase A (phosphoacceptor) domain BMD_3443 SM00448 cheY-homologous receiver domain BMD_3443 SM00862 Transcriptional regulatory protein, C terminal BMD_3446 SM00382 ATPases associated with a variety of cellular activities BMD_3451 SM00530 Helix-turn-helix XRE-family like proteins BMD_3457 SM00342 helix_turn_helix, arabinose operon control protein BMD_3459 SM00354 helix_turn _helix lactose operon repressor BMD_3467 SM00420 helix_turn_helix, Deoxyribose operon repressor BMD_3467 SM01134 BMD_3467 BMD_3473 SM00829 Enoylreductase BMD_3474 SM00422 helix_turn_helix, mercury resistance BMD_3482 SM00357 Cold shock protein domain BMD_3485 SM00287 Bacterial SH3 domain homologues BMD_3498 SM00631 BMD_3498 BMD_3508 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3508 SM00895 BMD_3508 BMD_3515 SM00420 helix_turn_helix, Deoxyribose operon repressor BMD_3515 SM01134 BMD_3515 BMD_3524 SM00530 Helix-turn-helix XRE-family like proteins BMD_3531 SM01007 Class II Aldolase and Adducin N-terminal domain BMD_3533 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3534 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_3538 SM00899 BMD_3538 BMD_3544 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_3573 SM00859 Semialdehyde dehydrogenase, NAD binding domain BMD_3582 SM00100 Cyclic nucleotide-monophosphate binding domain BMD_3585 SM00422 helix_turn_helix, mercury resistance BMD_3588 SM00829 Enoylreductase BMD_3589 SM00028 Tetratricopeptide repeats BMD_3589 SM00382 ATPases associated with a variety of cellular activities BMD_3609 SM00882 Coenzyme A transferase BMD_3612 SM00829 Enoylreductase BMD_3613 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMD_3624 SM00354 helix_turn _helix lactose operon repressor BMD_3625 SM00448 cheY-homologous receiver domain BMD_3625 SM00850 LytTr DNA-binding domain BMD_3626 SM00387 Histidine kinase-like ATPases BMD_3626 SM00388 His Kinase A (phosphoacceptor) domain BMD_3626 SM00448 cheY-homologous receiver domain BMD_3657 SM00877 BMD_3657 BMD_3661 SM00877 BMD_3661 BMD_3663 SM00877 BMD_3663 BMD_3668 SM00877 BMD_3668 BMD_3670 SM00448 cheY-homologous receiver domain BMD_3670 SM01012 BMD_3670 BMD_3671 SM00387 Histidine kinase-like ATPases BMD_3707 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3717 SM00422 helix_turn_helix, mercury resistance BMD_3717 SM00871 Bacterial transcription activator, effector binding domain BMD_3731 SM00860 SMI1 / KNR4 family BMD_3733 SM00870 BMD_3733 BMD_3745 SM00919 Malic enzyme, NAD binding domain BMD_3745 SM01274 BMD_3745 BMD_3758 SM00640 Glycosyl hydrolases family 32 BMD_3759 SM00642 Alpha-amylase domain BMD_3760 SM00354 helix_turn _helix lactose operon repressor BMD_3775 SM00342 helix_turn_helix, arabinose operon control protein BMD_3775 SM00871 Bacterial transcription activator, effector binding domain BMD_3778 SM00530 Helix-turn-helix XRE-family like proteins BMD_3781 SM00852 Probable molybdopterin binding domain BMD_3783 SM00852 Probable molybdopterin binding domain BMD_3803 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_3807 SM00357 Cold shock protein domain BMD_3821 SM00052 Putative diguanylate phosphodiesterase BMD_3821 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_3821 SM00267 diguanylate cyclase BMD_3827 SM00966 SpoVT / AbrB like domain BMD_3843 SM00422 helix_turn_helix, mercury resistance BMD_3846 SM00422 helix_turn_helix, mercury resistance BMD_3852 SM00640 Glycosyl hydrolases family 32 BMD_3860 SM00382 ATPases associated with a variety of cellular activities BMD_3862 SM00387 Histidine kinase-like ATPases BMD_3862 SM00388 His Kinase A (phosphoacceptor) domain BMD_3863 SM00448 cheY-homologous receiver domain BMD_3863 SM00862 Transcriptional regulatory protein, C terminal BMD_3877 SM00984 UDP binding domain BMD_3882 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BMD_3883 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_3897 SM00344 helix_turn_helix ASNC type BMD_3899 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMD_3900 SM00448 cheY-homologous receiver domain BMD_3900 SM00862 Transcriptional regulatory protein, C terminal BMD_3901 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_3901 SM00387 Histidine kinase-like ATPases BMD_3901 SM00388 His Kinase A (phosphoacceptor) domain BMD_3904 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3904 SM00895 BMD_3904 BMD_3915 SM00382 ATPases associated with a variety of cellular activities BMD_3920 SM00387 Histidine kinase-like ATPases BMD_3920 SM00388 His Kinase A (phosphoacceptor) domain BMD_3948 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3963 SM00849 Metallo-beta-lactamase superfamily BMD_3971 SM00257 Lysin motif BMD_3972 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_3972 SM01091 Transporter associated domain BMD_3989 SM00382 ATPases associated with a variety of cellular activities BMD_3990 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_3997 SM00382 ATPases associated with a variety of cellular activities BMD_4003 SM01061 CAT RNA binding domain BMD_4013 SM00014 Acid phosphatase homologues BMD_4016 SM00219 Tyrosine kinase, catalytic domain BMD_4028 SM00882 Coenzyme A transferase BMD_4029 SM00882 Coenzyme A transferase BMD_4033 SM00091 PAS domain BMD_4033 SM00387 Histidine kinase-like ATPases BMD_4033 SM00388 His Kinase A (phosphoacceptor) domain BMD_4040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_4040 SM00387 Histidine kinase-like ATPases BMD_4040 SM00388 His Kinase A (phosphoacceptor) domain BMD_4051 SM01006 Siderophore biosynthesis protein domain BMD_4058 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMD_4058 SM00091 PAS domain BMD_4058 SM00387 Histidine kinase-like ATPases BMD_4058 SM00388 His Kinase A (phosphoacceptor) domain BMD_4062 SM00091 PAS domain BMD_4062 SM00382 ATPases associated with a variety of cellular activities BMD_4069 SM00382 ATPases associated with a variety of cellular activities BMD_4070 SM00382 ATPases associated with a variety of cellular activities BMD_4073 SM00861 Transketolase, pyrimidine binding domain BMD_4075 SM00857 Resolvase, N terminal domain BMD_4084 SM00257 Lysin motif BMD_4084 SM00646 BMD_4084 BMD_4086 SM01230 BMD_4086 BMD_4087 SM00422 helix_turn_helix, mercury resistance BMD_4091 SM00382 ATPases associated with a variety of cellular activities BMD_4094 SM00853 MutL C terminal dimerisation domain BMD_4094 SM01340 BMD_4094 BMD_4095 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BMD_4095 SM00534 ATPase domain of DNA mismatch repair MUTS family BMD_4099 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_4105 SM00322 K homology RNA-binding domain BMD_4105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_4106 SM00382 ATPases associated with a variety of cellular activities BMD_4107 SM00852 Probable molybdopterin binding domain BMD_4109 SM00530 Helix-turn-helix XRE-family like proteins BMD_4117 SM00382 ATPases associated with a variety of cellular activities BMD_4119 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_4119 SM00866 BMD_4119 BMD_4120 SM00382 ATPases associated with a variety of cellular activities BMD_4120 SM00843 BMD_4120 BMD_4123 SM00849 Metallo-beta-lactamase superfamily BMD_4124 SM01130 BMD_4124 BMD_4126 SM00859 Semialdehyde dehydrogenase, NAD binding domain BMD_4132 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_4132 SM00322 K homology RNA-binding domain BMD_4133 SM01387 BMD_4133 BMD_4134 SM00904 Riboflavin kinase BMD_4141 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_4141 SM00322 K homology RNA-binding domain BMD_4143 SM00479 BMD_4143 BMD_4143 SM00481 DNA polymerase alpha chain like domain BMD_4145 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMD_4156 SM00260 Two component signalling adaptor domain BMD_4157 SM00073 Histidine Phosphotransfer domain BMD_4157 SM00260 Two component signalling adaptor domain BMD_4157 SM00387 Histidine kinase-like ATPases BMD_4157 SM01231 BMD_4157 BMD_4158 SM00448 cheY-homologous receiver domain BMD_4160 SM00382 ATPases associated with a variety of cellular activities BMD_4160 SM00962 SRP54-type protein, GTPase domain BMD_4167 SM00448 cheY-homologous receiver domain BMD_4177 SM00382 ATPases associated with a variety of cellular activities BMD_4185 SM00382 ATPases associated with a variety of cellular activities BMD_4185 SM01086 C-terminal, D2-small domain, of ClpB protein BMD_4189 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BMD_4189 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BMD_4189 SM00493 BMD_4189 BMD_4191 SM00881 CoA binding domain BMD_4202 SM00382 ATPases associated with a variety of cellular activities BMD_4202 SM00962 SRP54-type protein, GTPase domain BMD_4202 SM00963 SRP54-type protein, helical bundle domain BMD_4204 SM00382 ATPases associated with a variety of cellular activities BMD_4204 SM00962 SRP54-type protein, GTPase domain BMD_4204 SM00963 SRP54-type protein, helical bundle domain BMD_4205 SM00968 SMC proteins Flexible Hinge Domain BMD_4206 SM00358 Double-stranded RNA binding motif BMD_4206 SM00535 Ribonuclease III family BMD_4208 SM00822 BMD_4208 BMD_4209 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BMD_4212 SM00487 DEAD-like helicases superfamily BMD_4212 SM00490 helicase superfamily c-terminal domain BMD_4216 SM01120 BMD_4216 BMD_4216 SM01121 BMD_4216 BMD_4219 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BMD_4222 SM00220 Serine/Threonine protein kinases, catalytic domain BMD_4222 SM00740 BMD_4222 BMD_4223 SM00331 Sigma factor PP2C-like phosphatases BMD_4223 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BMD_4228 SM00487 DEAD-like helicases superfamily BMD_4228 SM00490 helicase superfamily c-terminal domain BMD_4230 SM01409 BMD_4230 BMD_4231 SM00072 Guanylate kinase homologues. BMD_4234 SM00831 Cation transporter/ATPase, N-terminus BMD_4237 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMD_4240 SM00851 MGS-like domain BMD_4240 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BMD_4240 SM01209 BMD_4240 BMD_4241 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BMD_4246 SM00363 S4 RNA-binding domain BMD_4251 SM00363 S4 RNA-binding domain BMD_4260 SM00864 Tubulin/FtsZ family, GTPase domain BMD_4260 SM00865 Tubulin/FtsZ family, C-terminal domain BMD_4261 SM00842 Cell division protein FtsA BMD_4268 SM00740 BMD_4268 BMD_4269 SM00740 BMD_4269 BMD_4277 SM00878 Biotin carboxylase C-terminal domain BMD_4284 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMD_4300 SM00914 BMD_4300 BMD_4301 SM00028 Tetratricopeptide repeats BMD_4313 SM00138 Methyltransferase, chemotaxis proteins BMD_4314 SM00562 BMD_4314 BMD_4320 SM00411 bacterial (prokaryotic) histone like domain BMD_4329 SM01240 BMD_4329 BMD_4330 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_4331 SM00563 Phosphate acyltransferases BMD_4338 SM00870 BMD_4338 BMD_4340 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_4342 SM00422 helix_turn_helix, mercury resistance BMD_4347 SM00487 DEAD-like helicases superfamily BMD_4347 SM00490 helicase superfamily c-terminal domain BMD_4352 SM00257 Lysin motif BMD_4353 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_4353 SM00387 Histidine kinase-like ATPases BMD_4353 SM00388 His Kinase A (phosphoacceptor) domain BMD_4354 SM00448 cheY-homologous receiver domain BMD_4354 SM00862 Transcriptional regulatory protein, C terminal BMD_4358 SM00363 S4 RNA-binding domain BMD_4378 SM00387 Histidine kinase-like ATPases BMD_4380 SM00936 Penicillin-binding protein 5, C-terminal domain BMD_4391 SM00882 Coenzyme A transferase BMD_4392 SM00882 Coenzyme A transferase BMD_4397 SM00704 CDGSH-type zinc finger. Function unknown. BMD_4399 SM00849 Metallo-beta-lactamase superfamily BMD_4416 SM00382 ATPases associated with a variety of cellular activities BMD_4418 SM00062 Bacterial periplasmic substrate-binding proteins BMD_4418 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BMD_4424 SM00861 Transketolase, pyrimidine binding domain BMD_4428 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMD_4430 SM00091 PAS domain BMD_4430 SM00382 ATPases associated with a variety of cellular activities BMD_4436 SM00448 cheY-homologous receiver domain BMD_4437 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMD_4440 SM00363 S4 RNA-binding domain BMD_4441 SM00861 Transketolase, pyrimidine binding domain BMD_4447 SM00878 Biotin carboxylase C-terminal domain BMD_4456 SM00382 ATPases associated with a variety of cellular activities BMD_4458 SM00841 Elongation factor P, C-terminal BMD_4458 SM01185 BMD_4458 BMD_4465 SM00529 Helix-turn-helix diphteria tox regulatory element BMD_4468 SM00450 Rhodanese Homology Domain BMD_4472 SM00487 DEAD-like helicases superfamily BMD_4472 SM00490 helicase superfamily c-terminal domain BMD_4481 SM00382 ATPases associated with a variety of cellular activities BMD_4484 SM00849 Metallo-beta-lactamase superfamily BMD_4486 SM00631 BMD_4486 BMD_4489 SM00028 Tetratricopeptide repeats BMD_4498 SM00382 ATPases associated with a variety of cellular activities BMD_4518 SM00382 ATPases associated with a variety of cellular activities BMD_4520 SM00518 AP endonuclease family 2 BMD_4521 SM00487 DEAD-like helicases superfamily BMD_4521 SM00490 helicase superfamily c-terminal domain BMD_4529 SM00400 zinc finger BMD_4529 SM00493 BMD_4529 BMD_4532 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_4538 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_4539 SM00322 K homology RNA-binding domain BMD_4543 SM00244 prohibitin homologues BMD_4547 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_4550 SM00271 DnaJ molecular chaperone homology domain BMD_4554 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_4555 SM00838 Elongation factor G C-terminus BMD_4561 SM00849 Metallo-beta-lactamase superfamily BMD_4563 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMD_4567 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_4569 SM01103 BMD_4569 BMD_4589 SM00382 ATPases associated with a variety of cellular activities BMD_4595 SM00732 Likely ribonuclease with RNase H fold. BMD_4597 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BMD_4602 SM00382 ATPases associated with a variety of cellular activities BMD_4603 SM00028 Tetratricopeptide repeats BMD_4607 SM00382 ATPases associated with a variety of cellular activities BMD_4615 SM00287 Bacterial SH3 domain homologues BMD_4615 SM00646 BMD_4615 BMD_4617 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_4617 SM00954 Region found in RelA / SpoT proteins BMD_4625 SM01323 BMD_4625 BMD_4629 SM00382 ATPases associated with a variety of cellular activities BMD_4630 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMD_4635 SM00257 Lysin motif BMD_4644 SM01317 BMD_4644 BMD_4648 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_4666 SM00257 Lysin motif BMD_4668 SM01004 Delta-aminolevulinic acid dehydratase BMD_4675 SM00382 ATPases associated with a variety of cellular activities BMD_4675 SM00464 Found in ATP-dependent protease La (LON) BMD_4676 SM00382 ATPases associated with a variety of cellular activities BMD_4677 SM00382 ATPases associated with a variety of cellular activities BMD_4677 SM00994 ClpX C4-type zinc finger BMD_4677 SM01086 C-terminal, D2-small domain, of ClpB protein BMD_4682 SM01329 BMD_4682 BMD_4683 SM00917 LeuA allosteric (dimerisation) domain BMD_4691 SM00909 Sporulation and spore germination BMD_4693 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_4702 SM00062 Bacterial periplasmic substrate-binding proteins BMD_4703 SM00382 ATPases associated with a variety of cellular activities BMD_4707 SM00421 helix_turn_helix, Lux Regulon BMD_4714 SM00465 GIY-YIG type nucleases (URI domain) BMD_4716 SM00893 Electron transfer flavoprotein domain BMD_4717 SM00893 Electron transfer flavoprotein domain BMD_4723 SM00463 Small MutS-related domain BMD_4723 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BMD_4723 SM00534 ATPase domain of DNA mismatch repair MUTS family BMD_4724 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMD_4724 SM00481 DNA polymerase alpha chain like domain BMD_4724 SM00483 DNA polymerase X family BMD_4728 SM00873 B3/4 domain BMD_4728 SM00874 tRNA synthetase B5 domain BMD_4728 SM00896 Ferredoxin-fold anticodon binding domain BMD_4730 SM00967 RNA 2'-O ribose methyltransferase substrate binding BMD_4739 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BMD_4746 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BMD_4749 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BMD_4749 SM01232 BMD_4749 BMD_4750 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BMD_4750 SM00474 3'-5' exonuclease BMD_4750 SM00475 5'-3' exonuclease BMD_4750 SM00482 DNA polymerase A domain BMD_4751 SM00091 PAS domain BMD_4751 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_4751 SM00387 Histidine kinase-like ATPases BMD_4751 SM00388 His Kinase A (phosphoacceptor) domain BMD_4752 SM00448 cheY-homologous receiver domain BMD_4752 SM00862 Transcriptional regulatory protein, C terminal BMD_4755 SM01329 BMD_4755 BMD_4763 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMD_4764 SM00919 Malic enzyme, NAD binding domain BMD_4764 SM01274 BMD_4764 BMD_4765 SM00481 DNA polymerase alpha chain like domain BMD_4770 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_4772 SM00849 Metallo-beta-lactamase superfamily BMD_4773 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BMD_4773 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BMD_4789 SM00981 BMD_4789 BMD_4794 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMD_4796 SM00363 S4 RNA-binding domain BMD_4796 SM01390 BMD_4796 BMD_4797 SM00363 S4 RNA-binding domain BMD_4800 SM00116 Domain in cystathionine beta-synthase and other proteins. BMD_4804 SM00354 helix_turn _helix lactose operon repressor BMD_4805 SM00830 Chorismate mutase type II BMD_4812 SM00382 ATPases associated with a variety of cellular activities BMD_4812 SM00843 BMD_4812 BMD_4819 SM00849 Metallo-beta-lactamase superfamily BMD_4823 SM00642 Alpha-amylase domain BMD_4828 SM00420 helix_turn_helix, Deoxyribose operon repressor BMD_4829 SM00363 S4 RNA-binding domain BMD_4833 SM00450 Rhodanese Homology Domain BMD_4840 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_4845 SM00014 Acid phosphatase homologues BMD_4852 SM00382 ATPases associated with a variety of cellular activities BMD_4859 SM01234 BMD_4859 BMD_4860 SM00947 Carbonic anhydrase BMD_4861 SM00833 Cobalamin synthesis protein cobW C-terminal domain BMD_4873 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMD_4885 SM00642 Alpha-amylase domain BMD_4933 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_4935 SM00344 helix_turn_helix ASNC type BMD_4940 SM01298 BMD_4940 BMD_4941 SM00479 BMD_4941 BMD_4944 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_4971 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_4980 SM00382 ATPases associated with a variety of cellular activities BMD_4984 SM00382 ATPases associated with a variety of cellular activities BMD_4984 SM00930 BMD_4984 BMD_4986 SM00493 BMD_4986 BMD_4997 SM00382 ATPases associated with a variety of cellular activities BMD_5011 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_5011 SM00387 Histidine kinase-like ATPases BMD_5011 SM00388 His Kinase A (phosphoacceptor) domain BMD_5012 SM00448 cheY-homologous receiver domain BMD_5012 SM00862 Transcriptional regulatory protein, C terminal BMD_5014 SM00014 Acid phosphatase homologues BMD_5015 SM00347 helix_turn_helix multiple antibiotic resistance protein BMD_5020 SM00852 Probable molybdopterin binding domain BMD_5023 SM00729 Elongator protein 3, MiaB family, Radical SAM BMD_5026 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BMD_5026 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BMD_5031 SM00316 Ribosomal protein S1-like RNA-binding domain BMD_5031 SM00357 Cold shock protein domain BMD_5031 SM00955 BMD_5031 BMD_5034 SM01192 BMD_5034 BMD_5034 SM01193 BMD_5034 BMD_5038 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BMD_5051 SM00028 Tetratricopeptide repeats BMD_5069 SM00487 DEAD-like helicases superfamily BMD_5069 SM00490 helicase superfamily c-terminal domain BMD_5070 SM00091 PAS domain BMD_5070 SM00382 ATPases associated with a variety of cellular activities BMD_5073 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMD_5074 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMD_5074 SM00245 tail specific protease BMD_5077 SM00382 ATPases associated with a variety of cellular activities BMD_5083 SM00937 BMD_5083 BMD_5084 SM00957 SecA DEAD-like domain BMD_5084 SM00958 SecA preprotein cross-linking domain BMD_5104 SM00487 DEAD-like helicases superfamily BMD_5104 SM00490 helicase superfamily c-terminal domain BMD_5108 SM00421 helix_turn_helix, Lux Regulon BMD_5108 SM00448 cheY-homologous receiver domain BMD_5109 SM00387 Histidine kinase-like ATPases BMD_5114 SM00244 prohibitin homologues BMD_5116 SM00984 UDP binding domain BMD_5119 SM00487 DEAD-like helicases superfamily BMD_5119 SM00490 helicase superfamily c-terminal domain BMD_5120 SM00257 Lysin motif BMD_5134 SM00382 ATPases associated with a variety of cellular activities BMD_5149 SM00226 Low molecular weight phosphatase family BMD_5155 SM00937 BMD_5155 BMD_5158 SM00357 Cold shock protein domain BMD_5158 SM00382 ATPases associated with a variety of cellular activities BMD_5158 SM00959 Rho termination factor, N-terminal domain BMD_5162 SM00448 cheY-homologous receiver domain BMD_5173 SM00155 Phospholipase D. Active site motifs. BMD_5175 SM00836 DALR anticodon binding domain BMD_5175 SM01016 Arginyl tRNA synthetase N terminal dom BMD_5184 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMD_5194 SM00986 Uracil DNA glycosylase superfamily BMD_5194 SM00987 UreE urease accessory protein, C-terminal domain BMD_5197 SM01350 BMD_5197 BMD_5199 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BMD_5199 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BMD_5214 SM00382 ATPases associated with a variety of cellular activities BMD_5215 SM00382 ATPases associated with a variety of cellular activities BMD_5220 SM00354 helix_turn _helix lactose operon repressor BMD_5226 SM01060 BMD_5226 BMD_5227 SM00387 Histidine kinase-like ATPases BMD_5227 SM00388 His Kinase A (phosphoacceptor) domain BMD_5228 SM00448 cheY-homologous receiver domain BMD_5228 SM00862 Transcriptional regulatory protein, C terminal BMD_5229 SM00642 Alpha-amylase domain BMD_5231 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BMD_5233 SM00448 cheY-homologous receiver domain BMD_5233 SM00862 Transcriptional regulatory protein, C terminal BMD_5234 SM00387 Histidine kinase-like ATPases BMD_5234 SM00388 His Kinase A (phosphoacceptor) domain BMD_5240 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMD_5241 SM00849 Metallo-beta-lactamase superfamily BMD_5244 SM00091 PAS domain BMD_5244 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMD_5244 SM00387 Histidine kinase-like ATPases BMD_5244 SM00388 His Kinase A (phosphoacceptor) domain BMD_5245 SM00448 cheY-homologous receiver domain BMD_5245 SM00862 Transcriptional regulatory protein, C terminal BMD_5250 SM00788 Adenylosuccinate synthetase BMD_5253 SM00267 diguanylate cyclase BMD_5263 SM00470 ParB-like nuclease domain BMD_5265 SM00470 ParB-like nuclease domain BMD_5267 SM01228 BMD_5267 BMD_5269 SM00393 Putative single-stranded nucleic acids-binding domain BMD_5269 SM01245 BMD_5269