BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 Gene3D G3DSA:1.10.1280.10 1 297 3.5E-115 T 13-10-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 PRINTS PR00092 Tyrosinase copper-binding domain signature 223 241 2.2E-19 T 13-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 PRINTS PR00092 Tyrosinase copper-binding domain signature 89 94 2.2E-19 T 13-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 PRINTS PR00092 Tyrosinase copper-binding domain signature 203 214 2.2E-19 T 13-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 PRINTS PR00092 Tyrosinase copper-binding domain signature 60 77 2.2E-19 T 13-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 Pfam PF00264 Common central domain of tyrosinase 34 242 1.0E-45 T 13-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 SUPERFAMILY SSF48056 3 287 1.31E-69 T 13-10-2018 IPR008922 Uncharacterised domain, di-copper centre Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 ProSitePatterns PS00498 Tyrosinase and hemocyanins CuB-binding region signature. 224 235 - T 13-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 BMD_3389 73ffc0f612cac49a656b85f243868ac4 297 ProSitePatterns PS00497 Tyrosinase CuA-binding region signature. 60 77 - T 13-10-2018 IPR002227 Tyrosinase copper-binding domain GO:0016491 Reactome: R-HSA-5662702 BMD_5099 94464dfa922a762aa4ba433f58a85dd5 507 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 500 1.0E-112 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BMD_5099 94464dfa922a762aa4ba433f58a85dd5 507 Pfam PF00460 Flagella basal body rod protein 8 38 3.1E-8 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BMD_5099 94464dfa922a762aa4ba433f58a85dd5 507 PRINTS PR01005 Flagellar hook-associated protein signature 14 37 2.8E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BMD_5099 94464dfa922a762aa4ba433f58a85dd5 507 PRINTS PR01005 Flagellar hook-associated protein signature 134 154 2.8E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BMD_5099 94464dfa922a762aa4ba433f58a85dd5 507 PRINTS PR01005 Flagellar hook-associated protein signature 167 191 2.8E-7 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BMD_5099 94464dfa922a762aa4ba433f58a85dd5 507 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 439 500 4.7E-15 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BMD_5099 94464dfa922a762aa4ba433f58a85dd5 507 SUPERFAMILY SSF64518 148 501 1.31E-17 T 13-10-2018 BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 Gene3D G3DSA:3.30.230.70 1 244 9.2E-62 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 43.678 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 13-10-2018 IPR018336 Ribonuclease PH, conserved site BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 SUPERFAMILY SSF55666 152 236 8.25E-25 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 1.3E-116 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 Pfam PF03725 3' exoribonuclease family, domain 2 159 224 2.3E-13 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 Pfam PF01138 3' exoribonuclease family, domain 1 10 139 8.9E-24 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4690 2d6e32dda3ba36299aedf9f7701f381a 248 SUPERFAMILY SSF54211 1 181 7.09E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_1053 3b3671f755e19d9596c7de50a67a9084 283 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 1 282 4.9E-112 T 13-10-2018 BMD_1053 3b3671f755e19d9596c7de50a67a9084 283 Pfam PF06800 Sugar transport protein 4 280 5.3E-110 T 13-10-2018 IPR010651 Sugar transport protein GO:0015144|GO:0016021|GO:0034219 BMD_1053 3b3671f755e19d9596c7de50a67a9084 283 SUPERFAMILY SSF103481 37 138 1.16E-7 T 13-10-2018 BMD_1053 3b3671f755e19d9596c7de50a67a9084 283 SUPERFAMILY SSF103481 197 278 1.27E-5 T 13-10-2018 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 23 376 9.1E-146 T 13-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 207 217 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 Gene3D G3DSA:3.90.550.10 5 291 1.2E-92 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 29 48 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 20 394 48.824 T 13-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 SUPERFAMILY SSF51161 245 378 3.53E-22 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 116 124 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 Pfam PF00483 Nucleotidyl transferase 25 276 2.4E-69 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 Gene3D G3DSA:2.160.10.10 292 399 1.0E-23 T 13-10-2018 BMD_4884 700ea1d1a9b9dae09367e9af7fd0915f 400 SUPERFAMILY SSF53448 18 280 8.05E-83 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 109 132 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 172 195 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 146 171 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 309 331 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 269 288 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 398 416 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 364 382 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PRINTS PR00303 Preprotein translocase SecY subunit signature 67 87 2.0E-99 T 13-10-2018 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 ProSitePatterns PS00755 Protein secY signature 1. 68 87 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 Gene3D G3DSA:1.10.3370.10 1 425 6.8E-160 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 429 29.203 T 13-10-2018 IPR026593 Protein translocase subunit SecY BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 Pfam PF00344 SecY translocase 68 413 1.4E-114 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 SUPERFAMILY SSF103491 1 420 1.96E-129 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 425 7.3E-149 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 ProSitePatterns PS00756 Protein secY signature 2. 165 182 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0154 dd8ce61a0cab282dc9a1dd2ba65edb35 430 PIRSF PIRSF004557 1 430 8.7E-128 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 Gene3D G3DSA:3.40.50.2300 69 329 1.5E-79 T 13-10-2018 BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 Gene3D G3DSA:1.10.260.40 1 65 2.2E-20 T 13-10-2018 BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 Gene3D G3DSA:3.40.50.2300 168 334 1.5E-79 T 13-10-2018 BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 53 6.9E-15 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 SMART SM00354 8 78 1.1E-25 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 SUPERFAMILY SSF53822 68 338 3.37E-78 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 SUPERFAMILY SSF47413 7 66 1.35E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_0951 9dec125f541ddccf58fd0cd97b069d1a 343 Pfam PF13377 Periplasmic binding protein-like domain 176 337 2.3E-39 T 13-10-2018 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 253 1.0E-14 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 SUPERFAMILY SSF53738 3 180 2.12E-46 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 SUPERFAMILY SSF55957 357 446 9.42E-28 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 SUPERFAMILY SSF53738 158 256 3.69E-25 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 1.2E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 93 107 1.2E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 1.2E-11 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Gene3D G3DSA:3.30.310.50 370 448 1.0E-29 T 13-10-2018 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 94 103 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 369 2.4E-36 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 443 2.0E-184 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 SUPERFAMILY SSF53738 257 366 5.49E-33 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Gene3D G3DSA:3.40.120.10 174 362 1.3E-70 T 13-10-2018 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 6.7E-19 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Gene3D G3DSA:3.40.120.10 256 339 1.3E-70 T 13-10-2018 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Gene3D G3DSA:3.40.120.10 3 155 7.7E-58 T 13-10-2018 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 444 45.095 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0191 bf6015648cada90a8ec5ecd85fa65855 448 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 4.3E-43 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_4427 f7f3f832dda336995de1438e797285e3 361 PIRSF PIRSF036458 4 359 7.4E-173 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 BMD_4427 f7f3f832dda336995de1438e797285e3 361 Gene3D G3DSA:3.30.420.40 7 358 8.5E-158 T 13-10-2018 BMD_4427 f7f3f832dda336995de1438e797285e3 361 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 8 356 2.9E-172 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 BMD_4427 f7f3f832dda336995de1438e797285e3 361 SUPERFAMILY SSF53067 120 350 1.5E-57 T 13-10-2018 BMD_4427 f7f3f832dda336995de1438e797285e3 361 Hamap MF_00542 Probable butyrate kinase [buk]. 1 361 166.51 T 13-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 BMD_4427 f7f3f832dda336995de1438e797285e3 361 PRINTS PR00471 Acetate kinase family signature 277 290 3.7E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 PRINTS PR00471 Acetate kinase family signature 300 316 3.7E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 PRINTS PR00471 Acetate kinase family signature 345 357 3.7E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 PRINTS PR00471 Acetate kinase family signature 182 203 3.7E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 PRINTS PR00471 Acetate kinase family signature 8 19 3.7E-18 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 Pfam PF00871 Acetokinase family 8 355 1.1E-75 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 SUPERFAMILY SSF53067 6 174 2.74E-70 T 13-10-2018 BMD_4427 f7f3f832dda336995de1438e797285e3 361 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 8 19 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 182 199 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4427 f7f3f832dda336995de1438e797285e3 361 Gene3D G3DSA:3.30.420.40 140 335 8.5E-158 T 13-10-2018 BMD_3465 7c001f851fe674fd590405a26c3ba522 272 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 265 2.2E-115 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 BMD_3465 7c001f851fe674fd590405a26c3ba522 272 SUPERFAMILY SSF51182 13 253 5.11E-72 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_3465 7c001f851fe674fd590405a26c3ba522 272 PIRSF PIRSF036628 1 270 5.0E-114 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 BMD_3465 7c001f851fe674fd590405a26c3ba522 272 Pfam PF04962 KduI/IolB family 6 264 1.7E-114 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 BMD_3465 7c001f851fe674fd590405a26c3ba522 272 Gene3D G3DSA:2.60.120.10 123 270 1.3E-65 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3465 7c001f851fe674fd590405a26c3ba522 272 Gene3D G3DSA:2.60.120.10 15 122 7.4E-44 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 Pfam PF03123 CAT RNA binding domain 7 61 3.8E-22 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 Gene3D G3DSA:1.10.1790.10 71 169 3.2E-33 T 13-10-2018 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 SUPERFAMILY SSF50151 5 57 1.96E-15 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 Gene3D G3DSA:1.20.58.1950 226 277 1.9E-23 T 13-10-2018 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 SUPERFAMILY SSF63520 180 276 1.44E-23 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 Gene3D G3DSA:1.20.890.100 170 224 3.0E-19 T 13-10-2018 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 Pfam PF00874 PRD domain 185 275 1.7E-19 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 Pfam PF00874 PRD domain 80 167 3.0E-26 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 ProSitePatterns PS00654 PRD domain signature. 102 114 - T 13-10-2018 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 Gene3D G3DSA:2.30.24.10 1 70 6.1E-26 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 SUPERFAMILY SSF63520 58 171 1.96E-32 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_1281 b6213f501c070a40df2ec1dcf0b94c73 282 SMART SM01061 5 63 1.2E-23 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 BMD_0336 8ca42f5a245276a9c1f21cecdbd68b68 351 Pfam PF06081 Aromatic acid exporter family member 1 10 147 9.1E-34 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 BMD_0135 5ee515af0eff35dbe60256dc6457b8a9 207 SUPERFAMILY SSF52166 1 206 1.44E-86 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0135 5ee515af0eff35dbe60256dc6457b8a9 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 17 204 1.6E-85 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0135 5ee515af0eff35dbe60256dc6457b8a9 207 Pfam PF00573 Ribosomal protein L4/L1 family 17 204 1.4E-74 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 BMD_0135 5ee515af0eff35dbe60256dc6457b8a9 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 207 38.776 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0135 5ee515af0eff35dbe60256dc6457b8a9 207 Gene3D G3DSA:3.40.1370.10 3 207 2.2E-85 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 2 49 1.7E-21 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 Gene3D G3DSA:1.20.5.710 1 50 6.2E-22 T 13-10-2018 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 55 120 3.0E-17 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 TIGRFAM TIGR00855 L12: ribosomal protein bL12 2 120 2.9E-50 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 54 120 1.6E-30 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 120 25.709 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 SUPERFAMILY SSF54736 50 120 2.27E-25 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 SUPERFAMILY SSF48300 1 55 1.83E-16 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0124 2e3cf4ed71a16182aca5995053d08923 120 Gene3D G3DSA:3.30.1390.10 51 120 1.3E-31 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 Gene3D G3DSA:3.40.50.720 3 90 7.4E-20 T 13-10-2018 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 Pfam PF08245 Mur ligase middle domain 107 276 1.1E-24 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 SUPERFAMILY SSF51984 4 82 1.16E-18 T 13-10-2018 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 Gene3D G3DSA:3.40.1190.10 92 292 4.1E-51 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 4 424 3.1E-131 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 1 433 32.922 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 SUPERFAMILY SSF53623 88 293 1.31E-56 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 SUPERFAMILY SSF53244 295 425 4.21E-36 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 Gene3D G3DSA:3.90.190.20 293 432 2.9E-40 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 Pfam PF02875 Mur ligase family, glutamate ligase domain 296 377 3.4E-19 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BMD_4810 679b9f31f0065cf2750a5e8e62f1ac50 433 Pfam PF01225 Mur ligase family, catalytic domain 4 102 2.2E-21 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 Gene3D G3DSA:1.20.120.1810 20 126 3.8E-24 T 13-10-2018 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 PIRSF PIRSF000770 1 242 3.9E-93 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 Gene3D G3DSA:1.10.10.10 160 237 8.0E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 PRINTS PR00046 Major sigma-70 factor signature 197 212 4.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 PRINTS PR00046 Major sigma-70 factor signature 78 91 4.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 PRINTS PR00046 Major sigma-70 factor signature 176 188 4.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 PRINTS PR00046 Major sigma-70 factor signature 212 223 4.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 223 8.7E-31 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 Pfam PF04545 Sigma-70, region 4 173 223 2.8E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 SUPERFAMILY SSF88946 10 120 1.96E-34 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 197 223 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 SUPERFAMILY SSF88659 139 225 5.45E-19 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 Pfam PF04542 Sigma-70 region 2 54 123 9.0E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4577 574d6499093089ca7ebffa0fd84fba5f 242 TIGRFAM TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor 5 228 6.4E-114 T 13-10-2018 IPR014209 RNA polymerase sigma-K type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_3976 0d5769093f0a3abc68b8fcfe34c94ffb 47 SUPERFAMILY SSF57938 7 39 5.23E-5 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BMD_1075 184efaae833f4929fdce230814072e57 456 Gene3D G3DSA:3.40.50.300 137 320 8.3E-63 T 13-10-2018 BMD_1075 184efaae833f4929fdce230814072e57 456 SMART SM00382 168 312 1.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1075 184efaae833f4929fdce230814072e57 456 SUPERFAMILY SSF52540 148 391 4.81E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1075 184efaae833f4929fdce230814072e57 456 Pfam PF13426 PAS domain 20 113 3.0E-6 T 13-10-2018 IPR000014 PAS domain BMD_1075 184efaae833f4929fdce230814072e57 456 SUPERFAMILY SSF46689 361 454 1.52E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1075 184efaae833f4929fdce230814072e57 456 SUPERFAMILY SSF55785 8 106 1.74E-7 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1075 184efaae833f4929fdce230814072e57 456 Pfam PF00158 Sigma-54 interaction domain 148 315 1.1E-64 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_1075 184efaae833f4929fdce230814072e57 456 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 172 185 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_1075 184efaae833f4929fdce230814072e57 456 Gene3D G3DSA:3.30.450.20 2 131 8.5E-12 T 13-10-2018 BMD_1075 184efaae833f4929fdce230814072e57 456 Gene3D G3DSA:1.10.8.60 321 397 1.1E-21 T 13-10-2018 BMD_1075 184efaae833f4929fdce230814072e57 456 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 235 250 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_1075 184efaae833f4929fdce230814072e57 456 Gene3D G3DSA:1.10.10.60 399 455 2.7E-5 T 13-10-2018 BMD_4926 110be429ae07ab697785b5edec336615 113 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 5 107 9.4E-33 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like BMD_4914 31ade3eca613c3e081507552055ed06c 259 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 214 9.8E-50 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_4914 31ade3eca613c3e081507552055ed06c 259 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_4914 31ade3eca613c3e081507552055ed06c 259 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 2 238 1.9E-102 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_4914 31ade3eca613c3e081507552055ed06c 259 Gene3D G3DSA:3.40.1010.10 1 117 9.3E-45 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_4914 31ade3eca613c3e081507552055ed06c 259 SUPERFAMILY SSF53790 1 249 1.1E-84 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_4914 31ade3eca613c3e081507552055ed06c 259 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 82 115 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_4914 31ade3eca613c3e081507552055ed06c 259 Gene3D G3DSA:3.30.950.10 118 257 1.0E-51 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 Gene3D G3DSA:2.30.40.10 4 432 2.5E-151 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 TIGRFAM TIGR03178 allantoinase: allantoinase 3 447 7.4E-165 T 13-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 15 434 7.9E-84 T 13-10-2018 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 Pfam PF01979 Amidohydrolase family 50 430 8.2E-29 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 Hamap MF_01645 Allantoinase [allB]. 1 449 48.228 T 13-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 SUPERFAMILY SSF51338 1 447 8.96E-29 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 Gene3D G3DSA:3.20.20.140 53 417 2.5E-151 T 13-10-2018 BMD_2011 6747adbac57b64d6d0d3ed820a7363a5 454 SUPERFAMILY SSF51556 54 377 1.05E-97 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_2040 d1df4d5e13075cdeda2d28f030cc4a11 452 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 15 442 3.0E-203 T 13-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 BMD_2040 d1df4d5e13075cdeda2d28f030cc4a11 452 Gene3D G3DSA:3.40.50.1100 29 442 4.1E-193 T 13-10-2018 BMD_2040 d1df4d5e13075cdeda2d28f030cc4a11 452 SUPERFAMILY SSF53686 76 443 1.83E-55 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_2040 d1df4d5e13075cdeda2d28f030cc4a11 452 Gene3D G3DSA:3.40.50.1100 121 243 4.1E-193 T 13-10-2018 BMD_2040 d1df4d5e13075cdeda2d28f030cc4a11 452 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 452 235.695 T 13-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 BMD_2040 d1df4d5e13075cdeda2d28f030cc4a11 452 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 113 127 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BMD_2040 d1df4d5e13075cdeda2d28f030cc4a11 452 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 99 399 3.4E-54 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_3983 579e3a2b413ac0acfb52a61a6280e680 476 PIRSF PIRSF005690 2 476 4.1E-162 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_3983 579e3a2b413ac0acfb52a61a6280e680 476 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 19 470 5.4E-158 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Gene3D G3DSA:2.30.130.40 1 114 7.8E-32 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 PIRSF PIRSF001174 1 773 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 SUPERFAMILY SSF52540 308 586 1.17E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Gene3D G3DSA:1.20.58.1480 119 243 7.6E-42 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Gene3D G3DSA:3.30.230.10 591 774 3.0E-85 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Gene3D G3DSA:3.40.50.300 311 489 1.9E-68 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 350 488 7.6E-23 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 TIGRFAM TIGR00763 lon: endopeptidase La 10 769 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Hamap MF_01973 Lon protease [lon]. 9 770 72.346 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Gene3D G3DSA:1.10.8.60 490 582 1.3E-33 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 SUPERFAMILY SSF88697 8 199 7.95E-46 T 13-10-2018 IPR015947 PUA-like superfamily BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 SUPERFAMILY SSF54211 593 768 3.68E-56 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 8 199 2.2E-42 T 13-10-2018 IPR003111 Lon, substrate-binding domain BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 SMART SM00464 8 200 7.3E-70 T 13-10-2018 IPR003111 Lon, substrate-binding domain BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 SMART SM00382 346 491 1.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 568 770 8.1E-100 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 593 609 1.8E-52 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 701 720 1.8E-52 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 724 742 1.8E-52 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 671 690 1.8E-52 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 354 373 1.8E-52 T 13-10-2018 BMD_4675 f2446d4196a93ff6558a93aac9b15276 774 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 674 682 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 BMD_4482 46d52c0d34863a6a5ac43321adae722b 127 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 115 1.2E-35 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR BMD_4482 46d52c0d34863a6a5ac43321adae722b 127 Gene3D G3DSA:3.40.30.10 3 121 1.5E-37 T 13-10-2018 BMD_4482 46d52c0d34863a6a5ac43321adae722b 127 SUPERFAMILY SSF52833 4 116 1.08E-32 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4482 46d52c0d34863a6a5ac43321adae722b 127 Pfam PF03960 ArsC family 7 113 4.4E-21 T 13-10-2018 IPR006660 Arsenate reductase-like BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 TIGRFAM TIGR01391 dnaG: DNA primase 4 420 1.4E-153 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Gene3D G3DSA:3.40.1360.10 244 368 3.4E-40 T 13-10-2018 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Hamap MF_00974 DNA primase [dnaG]. 4 592 30.041 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 SMART SM00493 262 333 8.7E-13 T 13-10-2018 IPR006171 TOPRIM domain BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 SUPERFAMILY SSF56731 115 426 2.88E-101 T 13-10-2018 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Pfam PF10410 DnaB-helicase binding domain of primase 371 424 3.1E-12 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Pfam PF01807 CHC2 zinc finger 6 99 2.0E-39 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 255 3.1E-43 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 SUPERFAMILY SSF57783 4 98 2.72E-38 T 13-10-2018 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 PIRSF PIRSF002811 2 602 3.5E-194 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Gene3D G3DSA:3.90.580.10 1 101 4.4E-43 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Gene3D G3DSA:3.90.980.10 111 243 4.3E-48 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 SUPERFAMILY SSF48024 462 540 4.58E-6 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Pfam PF13155 Toprim-like 265 350 2.9E-19 T 13-10-2018 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 SMART SM00400 36 90 7.5E-37 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BMD_4529 da38d184d96a27837936b0c6a4f28b7f 602 Gene3D G3DSA:1.10.860.10 466 561 5.8E-36 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 4 284 37.242 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 67 81 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 SUPERFAMILY SSF54506 2 283 2.75E-50 T 13-10-2018 BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 Gene3D G3DSA:3.10.310.10 126 274 2.8E-105 T 13-10-2018 BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 5 283 3.3E-92 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 Gene3D G3DSA:3.10.310.10 6 280 2.8E-105 T 13-10-2018 BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 Pfam PF01678 Diaminopimelate epimerase 6 128 3.2E-31 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BMD_4955 4472fd6733e6c35cd0566c5b0c80404d 284 Pfam PF01678 Diaminopimelate epimerase 161 276 2.5E-31 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 PRINTS PR00046 Major sigma-70 factor signature 238 249 5.2E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 PRINTS PR00046 Major sigma-70 factor signature 206 218 5.2E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 PRINTS PR00046 Major sigma-70 factor signature 223 238 5.2E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 PRINTS PR00046 Major sigma-70 factor signature 58 71 5.2E-10 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 Pfam PF04545 Sigma-70, region 4 203 250 6.1E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 Gene3D G3DSA:1.20.120.1810 1 102 7.2E-17 T 13-10-2018 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 Gene3D G3DSA:1.10.10.10 104 157 8.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 Pfam PF04539 Sigma-70 region 3 113 186 2.0E-16 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 Gene3D G3DSA:1.10.10.10 198 256 3.3E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 SUPERFAMILY SSF88659 107 181 6.1E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 SUPERFAMILY SSF88659 180 255 3.74E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 TIGRFAM TIGR02941 Sigma_B: RNA polymerase sigma-B factor 1 254 2.3E-133 T 13-10-2018 IPR014288 RNA polymerase sigma-B factor GO:0016987 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 28 253 1.5E-90 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 Pfam PF04542 Sigma-70 region 2 34 103 1.1E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 SUPERFAMILY SSF88946 11 103 1.57E-26 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 29 252 3.8E-34 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_0229 50b28862bbb82515dc58482ba3e8f173 264 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 58 71 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Pfam PF00990 Diguanylate cyclase, GGDEF domain 490 646 2.8E-46 T 13-10-2018 IPR000160 GGDEF domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 486 647 8.6E-44 T 13-10-2018 IPR000160 GGDEF domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Gene3D G3DSA:3.20.20.450 664 913 1.0E-97 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Pfam PF00989 PAS fold 258 331 7.2E-7 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SUPERFAMILY SSF55785 264 360 4.05E-9 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Gene3D G3DSA:3.30.70.270 485 663 1.5E-58 T 13-10-2018 BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Gene3D G3DSA:3.30.450.20 254 352 2.2E-9 T 13-10-2018 BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Pfam PF03707 Bacterial signalling protein N terminal repeat 58 113 1.7E-17 T 13-10-2018 IPR005330 MHYT domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Pfam PF03707 Bacterial signalling protein N terminal repeat 121 168 4.7E-13 T 13-10-2018 IPR005330 MHYT domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Pfam PF03707 Bacterial signalling protein N terminal repeat 188 240 4.4E-7 T 13-10-2018 IPR005330 MHYT domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SUPERFAMILY SSF55073 495 652 1.18E-47 T 13-10-2018 IPR029787 Nucleotide cyclase BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SMART SM00091 257 319 4.2 T 13-10-2018 IPR000014 PAS domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SMART SM00091 365 430 1.8E-7 T 13-10-2018 IPR000014 PAS domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SMART SM00267 479 650 1.2E-62 T 13-10-2018 IPR000160 GGDEF domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 257 325 5.5E-7 T 13-10-2018 IPR000014 PAS domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 364 486 1.6E-16 T 13-10-2018 IPR000014 PAS domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SUPERFAMILY SSF141868 665 913 6.02E-88 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SUPERFAMILY SSF55785 351 477 8.55E-14 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Gene3D G3DSA:3.30.450.20 353 477 3.8E-18 T 13-10-2018 BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 SMART SM00052 660 906 1.5E-109 T 13-10-2018 IPR001633 EAL domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Pfam PF13426 PAS domain 378 478 2.9E-8 T 13-10-2018 IPR000014 PAS domain BMD_1467 3be109a9281ebd5172c04d4afdb0ad7b 922 Pfam PF00563 EAL domain 668 901 3.4E-69 T 13-10-2018 IPR001633 EAL domain BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 Gene3D G3DSA:3.30.930.10 1 296 6.2E-127 T 13-10-2018 BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 91 295 1.6E-37 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 PRINTS PR01047 Threonyl-tRNA synthetase signature 97 125 1.7E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 PRINTS PR01047 Threonyl-tRNA synthetase signature 231 259 1.7E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 PRINTS PR01047 Threonyl-tRNA synthetase signature 130 153 1.7E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 PRINTS PR01047 Threonyl-tRNA synthetase signature 274 287 1.7E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 SUPERFAMILY SSF55681 11 293 7.08E-96 T 13-10-2018 BMD_2359 ca3ebb46b7f0a81a2083de0231d0b58d 296 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 3 295 1.4E-127 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_1380 2d0a80f58aa0387ec6a4ce7cdbd39a00 235 SUPERFAMILY SSF158499 130 195 4.84E-19 T 13-10-2018 IPR034829 DnaD-like domain superfamily BMD_1380 2d0a80f58aa0387ec6a4ce7cdbd39a00 235 SUPERFAMILY SSF46785 16 118 5.82E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1380 2d0a80f58aa0387ec6a4ce7cdbd39a00 235 Gene3D G3DSA:1.10.10.630 125 201 1.8E-31 T 13-10-2018 IPR034829 DnaD-like domain superfamily BMD_1380 2d0a80f58aa0387ec6a4ce7cdbd39a00 235 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 129 200 5.0E-25 T 13-10-2018 IPR006343 DnaD domain BMD_1380 2d0a80f58aa0387ec6a4ce7cdbd39a00 235 Pfam PF07261 Replication initiation and membrane attachment 130 202 1.9E-25 T 13-10-2018 IPR006343 DnaD domain BMD_1380 2d0a80f58aa0387ec6a4ce7cdbd39a00 235 Gene3D G3DSA:1.10.10.10 1 116 5.7E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 SUPERFAMILY SSF53448 4 307 8.79E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 Pfam PF00483 Nucleotidyl transferase 6 212 5.9E-25 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 3 452 42.138 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 266 300 1.1E-8 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 428 1.0E-6 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 318 352 6.1E-7 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 Gene3D G3DSA:3.90.550.10 1 252 1.0E-80 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 SUPERFAMILY SSF51161 254 447 8.1E-50 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 Gene3D G3DSA:2.160.10.10 253 439 1.6E-52 T 13-10-2018 BMD_0067 bd2901b92b7984f908cc54c39f8444a2 459 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 452 5.0E-189 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 BMD_1827 dad77ef2ef2f857901a9308e50ea2436 171 SUPERFAMILY SSF160631 4 167 1.96E-19 T 13-10-2018 BMD_1827 dad77ef2ef2f857901a9308e50ea2436 171 Gene3D G3DSA:3.40.1580.10 2 170 3.2E-15 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily BMD_1827 dad77ef2ef2f857901a9308e50ea2436 171 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 27 162 4.2E-24 T 13-10-2018 IPR018958 Knr4/Smi1-like domain BMD_1827 dad77ef2ef2f857901a9308e50ea2436 171 SMART SM00860 26 164 9.4E-11 T 13-10-2018 IPR018958 Knr4/Smi1-like domain BMD_3539 c18bbb6d403e7e1cfd13e23c6e00ea20 309 Gene3D G3DSA:3.30.565.40 110 227 2.0E-26 T 13-10-2018 BMD_3539 c18bbb6d403e7e1cfd13e23c6e00ea20 309 Pfam PF13739 Domain of unknown function (DUF4163) 120 211 3.3E-18 T 13-10-2018 IPR025303 Deacetylase PdaC BMD_3539 c18bbb6d403e7e1cfd13e23c6e00ea20 309 Pfam PF11738 Protein of unknown function (DUF3298) 230 305 2.3E-11 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 BMD_3539 c18bbb6d403e7e1cfd13e23c6e00ea20 309 Gene3D G3DSA:3.90.640.20 228 309 9.7E-14 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 Gene3D G3DSA:3.40.190.10 165 267 2.6E-34 T 13-10-2018 BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 SUPERFAMILY SSF46785 1 111 7.21E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 Gene3D G3DSA:3.40.190.10 91 289 2.6E-34 T 13-10-2018 BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 SUPERFAMILY SSF53850 88 298 5.07E-38 T 13-10-2018 BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 Pfam PF03466 LysR substrate binding domain 87 294 3.5E-40 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 Gene3D G3DSA:1.10.10.10 2 90 2.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.8E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.3E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.3E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3704 e0a9efe7fdcb3946ad57119057bbf8c2 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.3E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_4387 d4654ca6a597b9f0b2a81eb0200a332f 183 Pfam PF00293 NUDIX domain 42 157 1.7E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_4387 d4654ca6a597b9f0b2a81eb0200a332f 183 Gene3D G3DSA:3.90.79.10 4 180 1.1E-55 T 13-10-2018 BMD_4387 d4654ca6a597b9f0b2a81eb0200a332f 183 ProSitePatterns PS00893 Nudix box signature. 77 98 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BMD_4387 d4654ca6a597b9f0b2a81eb0200a332f 183 SUPERFAMILY SSF55811 7 177 2.98E-50 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_2489 852efc6d12971a1d1c997273d016296c 212 SUPERFAMILY SSF52172 1 133 2.28E-37 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2489 852efc6d12971a1d1c997273d016296c 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2489 852efc6d12971a1d1c997273d016296c 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 8.7E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2489 852efc6d12971a1d1c997273d016296c 212 Gene3D G3DSA:3.40.50.12740 3 211 5.4E-78 T 13-10-2018 BMD_2489 852efc6d12971a1d1c997273d016296c 212 SMART SM00421 149 206 9.3E-28 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2489 852efc6d12971a1d1c997273d016296c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 2.1E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2489 852efc6d12971a1d1c997273d016296c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 2.1E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2489 852efc6d12971a1d1c997273d016296c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 2.1E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2489 852efc6d12971a1d1c997273d016296c 212 SMART SM00448 3 116 8.7E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2489 852efc6d12971a1d1c997273d016296c 212 SUPERFAMILY SSF46894 141 211 6.8E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_2489 852efc6d12971a1d1c997273d016296c 212 Pfam PF00072 Response regulator receiver domain 5 117 1.8E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 Gene3D G3DSA:3.40.50.720 1 284 8.7E-89 T 13-10-2018 BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 SUPERFAMILY SSF51735 42 284 1.08E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 211 5.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 131 5.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 180 5.2E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 211 3.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 182 3.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 230 3.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 247 267 3.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 45 62 3.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 131 3.7E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 53 282 8.1E-63 T 13-10-2018 BMD_0667 3daa933acb74d7b58739cf42f80ceceb 287 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 179 207 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 Gene3D G3DSA:1.10.246.230 234 335 6.4E-26 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 127 146 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 393 408 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 417 434 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 343 361 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 247 266 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 55 80 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 109 127 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 218 234 4.1E-49 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 Gene3D G3DSA:3.60.20.40 343 516 3.1E-55 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 Pfam PF01019 Gamma-glutamyltranspeptidase 48 513 4.4E-110 T 13-10-2018 BMD_1006 fe31d08aaffb1d5893726cf2087f26d9 520 SUPERFAMILY SSF56235 23 514 6.66E-128 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 606 708 9.0E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Gene3D G3DSA:1.10.287.130 490 563 1.1E-18 T 13-10-2018 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SMART SM00387 606 712 1.0E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SUPERFAMILY SSF55785 361 484 1.08E-14 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SUPERFAMILY SSF55874 561 710 3.8E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 369 493 5.3E-17 T 13-10-2018 IPR000014 PAS domain BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SUPERFAMILY SSF103190 199 262 7.06E-7 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SUPERFAMILY SSF47384 494 561 2.75E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SMART SM00388 501 564 1.1E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Gene3D G3DSA:3.30.450.20 363 489 1.1E-21 T 13-10-2018 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Gene3D G3DSA:3.30.450.20 147 271 5.0E-16 T 13-10-2018 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Pfam PF13426 PAS domain 389 485 2.6E-9 T 13-10-2018 IPR000014 PAS domain BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SUPERFAMILY SSF158472 305 356 3.53E-7 T 13-10-2018 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Pfam PF00672 HAMP domain 305 355 1.6E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SMART SM00304 305 359 3.4E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Gene3D G3DSA:1.20.1480.50 272 362 5.5E-12 T 13-10-2018 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Pfam PF02743 Cache domain 39 267 6.5E-29 T 13-10-2018 IPR033479 Double Cache domain 1 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Gene3D G3DSA:3.30.565.10 564 713 1.3E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 SMART SM00086 444 486 0.0053 T 13-10-2018 IPR001610 PAC motif BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 696 709 1.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 657 1.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 672 690 1.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 PRINTS PR00344 Bacterial sensor protein C-terminal signature 661 671 1.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0392 7c7d1cb24d472b4639425bcc15c369ac 713 Pfam PF00512 His Kinase A (phospho-acceptor) domain 503 560 5.6E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 Gene3D G3DSA:3.40.50.2300 168 291 1.0E-58 T 13-10-2018 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 SMART SM00354 5 78 2.9E-26 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 SUPERFAMILY SSF47413 6 63 2.91E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 Gene3D G3DSA:3.40.50.2300 62 308 1.0E-58 T 13-10-2018 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 Gene3D G3DSA:1.10.260.40 1 61 4.6E-21 T 13-10-2018 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 6.5E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 6.5E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 55 8.0E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 Pfam PF13377 Periplasmic binding protein-like domain 176 332 3.0E-34 T 13-10-2018 BMD_5220 e631a8708d51cc39097862f6b5be2bde 336 SUPERFAMILY SSF53822 68 333 3.7E-56 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_3397 eaccd74e400a3f3d59511c16694e42d8 176 Gene3D G3DSA:1.10.1760.20 9 173 1.4E-46 T 13-10-2018 BMD_3397 eaccd74e400a3f3d59511c16694e42d8 176 Pfam PF07155 ECF-type riboflavin transporter, S component 12 170 3.7E-42 T 13-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 Gene3D G3DSA:3.40.50.1820 2 281 3.1E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00412 Epoxide hydrolase signature 251 273 3.9E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00412 Epoxide hydrolase signature 114 127 3.9E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00412 Epoxide hydrolase signature 100 113 3.9E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00412 Epoxide hydrolase signature 36 54 3.9E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 55 70 2.1E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 2.1E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 220 234 2.1E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 PRINTS PR00111 Alpha/beta hydrolase fold signature 100 113 2.1E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 SUPERFAMILY SSF53474 7 274 7.03E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4936 990b9ba041756ea935b432a92b0f87c4 282 Pfam PF00561 alpha/beta hydrolase fold 30 257 1.3E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4669 8e0a6639b3fa078f55248eed501feb14 257 Pfam PF02602 Uroporphyrinogen-III synthase HemD 23 249 4.5E-57 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4669 8e0a6639b3fa078f55248eed501feb14 257 SUPERFAMILY SSF69618 10 256 2.49E-63 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4669 8e0a6639b3fa078f55248eed501feb14 257 Gene3D G3DSA:3.40.50.10090 155 255 3.4E-21 T 13-10-2018 BMD_4669 8e0a6639b3fa078f55248eed501feb14 257 Gene3D G3DSA:3.40.50.10090 9 137 4.3E-29 T 13-10-2018 BMD_4515 d6e4dda2af3d5fef5fb972c1490befce 191 SUPERFAMILY SSF56784 3 163 1.5E-17 T 13-10-2018 IPR036412 HAD-like superfamily BMD_4515 d6e4dda2af3d5fef5fb972c1490befce 191 Pfam PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 7 182 3.9E-8 T 13-10-2018 IPR010708 5'(3')-deoxyribonucleotidase GO:0008253|GO:0009264 Reactome: R-HSA-73621 BMD_4515 d6e4dda2af3d5fef5fb972c1490befce 191 PIRSF PIRSF021362 2 191 3.0E-68 T 13-10-2018 IPR009206 Nucleotidase, putative BMD_4515 d6e4dda2af3d5fef5fb972c1490befce 191 Gene3D G3DSA:3.40.50.1000 2 156 4.6E-8 T 13-10-2018 IPR023214 HAD superfamily BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 SUPERFAMILY SSF51316 173 303 2.04E-31 T 13-10-2018 IPR011057 Mss4-like superfamily BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 SUPERFAMILY SSF55068 3 164 6.8E-53 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 2 161 28.067 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 Pfam PF01625 Peptide methionine sulfoxide reductase 5 155 2.4E-45 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 Gene3D G3DSA:3.30.1060.10 1 166 1.1E-48 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 Gene3D G3DSA:2.170.150.20 172 305 8.7E-29 T 13-10-2018 BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 Pfam PF01641 SelR domain 178 289 4.5E-22 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BMD_2003 d2e33c569a1ed3d852993ebffe7c59c5 305 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 4 154 1.7E-45 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_0660 5a19d5537b8e85a055412067013de5ad 497 Pfam PF00128 Alpha amylase, catalytic domain 63 135 6.4E-27 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_0660 5a19d5537b8e85a055412067013de5ad 497 Pfam PF00128 Alpha amylase, catalytic domain 145 341 1.7E-6 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_0660 5a19d5537b8e85a055412067013de5ad 497 Pfam PF16657 Maltogenic Amylase, C-terminal domain 377 448 1.1E-6 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal BMD_0660 5a19d5537b8e85a055412067013de5ad 497 Gene3D G3DSA:3.20.20.80 22 372 1.8E-87 T 13-10-2018 BMD_0660 5a19d5537b8e85a055412067013de5ad 497 SUPERFAMILY SSF51011 377 456 2.83E-11 T 13-10-2018 BMD_0660 5a19d5537b8e85a055412067013de5ad 497 SMART SM00642 35 368 2.7E-30 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_0660 5a19d5537b8e85a055412067013de5ad 497 Gene3D G3DSA:2.60.40.1180 373 468 4.6E-28 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_0660 5a19d5537b8e85a055412067013de5ad 497 SUPERFAMILY SSF51445 25 377 3.52E-62 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_3075 bf13d516b0f657674546e45ed7ed8149 318 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 26 315 2.1E-67 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase BMD_3075 bf13d516b0f657674546e45ed7ed8149 318 SUPERFAMILY SSF111331 24 316 5.23E-67 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BMD_3075 bf13d516b0f657674546e45ed7ed8149 318 Gene3D G3DSA:2.60.200.40 147 301 9.9E-79 T 13-10-2018 BMD_3075 bf13d516b0f657674546e45ed7ed8149 318 SMART SM00046 26 153 1.9E-11 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BMD_3075 bf13d516b0f657674546e45ed7ed8149 318 Gene3D G3DSA:3.40.50.10330 29 146 9.9E-79 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 BMD_3075 bf13d516b0f657674546e45ed7ed8149 318 Pfam PF00781 Diacylglycerol kinase catalytic domain 27 148 1.8E-31 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BMD_4218 67b0206f6ae6b14dbf3a7999db8b4d54 62 Gene3D G3DSA:2.30.170.40 19 62 2.1E-18 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4218 67b0206f6ae6b14dbf3a7999db8b4d54 62 SUPERFAMILY SSF143800 1 61 1.06E-22 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4218 67b0206f6ae6b14dbf3a7999db8b4d54 62 Pfam PF00830 Ribosomal L28 family 3 58 2.0E-19 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4218 67b0206f6ae6b14dbf3a7999db8b4d54 62 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 62 19.152 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4218 67b0206f6ae6b14dbf3a7999db8b4d54 62 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 56 1.0E-21 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 Pfam PF07690 Major Facilitator Superfamily 8 178 1.4E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 Pfam PF07690 Major Facilitator Superfamily 228 379 2.7E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 Gene3D G3DSA:1.20.1250.20 197 388 2.2E-20 T 13-10-2018 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 PRINTS PR01988 Putative bacilysin exporter bacE signature 92 110 4.3E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 PRINTS PR01988 Putative bacilysin exporter bacE signature 131 152 4.3E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 PRINTS PR01988 Putative bacilysin exporter bacE signature 347 370 4.3E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 PRINTS PR01988 Putative bacilysin exporter bacE signature 7 29 4.3E-6 T 13-10-2018 IPR022324 Bacilysin exporter BacE, putative GO:0016020|GO:0042891 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 Gene3D G3DSA:1.20.1250.20 1 194 3.9E-24 T 13-10-2018 BMD_4837 707e538fc075045f58f22c1d055ebfeb 395 SUPERFAMILY SSF103473 3 387 1.57E-52 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 193 8.9E-22 T 13-10-2018 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 Gene3D G3DSA:3.40.50.1000 6 207 4.0E-69 T 13-10-2018 IPR023214 HAD superfamily BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 TIGRFAM TIGR01428 HAD_type_II: haloacid dehalogenase, type II 4 198 1.2E-63 T 13-10-2018 IPR006328 L-2-Haloacid dehalogenase GO:0019120 KEGG: 00361+3.8.1.2|KEGG: 00625+3.8.1.2|MetaCyc: PWY-7425 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 SUPERFAMILY SSF56784 2 218 3.87E-53 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 TIGRFAM TIGR01493 HAD-SF-IA-v2: HAD hydrolase, family IA, variant 2 6 185 3.6E-27 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 Gene3D G3DSA:1.10.150.240 17 91 4.0E-69 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 46 187 4.7E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 182 195 1.1E-32 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 1.1E-32 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 1.1E-32 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 1.1E-32 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 29 42 1.1E-32 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 1.1E-32 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1012 5cb38e814cfc40d09caa5efd83c32381 219 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 43 56 1.1E-32 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1420 fc7c43fc0d1cf16536da40f1a6aa33ea 539 Pfam PF00128 Alpha amylase, catalytic domain 28 373 6.4E-118 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_1420 fc7c43fc0d1cf16536da40f1a6aa33ea 539 Gene3D G3DSA:3.90.400.10 102 173 5.4E-198 T 13-10-2018 BMD_1420 fc7c43fc0d1cf16536da40f1a6aa33ea 539 Gene3D G3DSA:2.60.40.1180 477 539 1.9E-14 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_1420 fc7c43fc0d1cf16536da40f1a6aa33ea 539 SUPERFAMILY SSF51445 3 473 1.98E-158 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_1420 fc7c43fc0d1cf16536da40f1a6aa33ea 539 SUPERFAMILY SSF51011 476 535 2.21E-12 T 13-10-2018 BMD_1420 fc7c43fc0d1cf16536da40f1a6aa33ea 539 Gene3D G3DSA:3.20.20.80 5 468 5.4E-198 T 13-10-2018 BMD_1420 fc7c43fc0d1cf16536da40f1a6aa33ea 539 SMART SM00642 13 415 2.5E-159 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_2032 580a932507dc0df02edc46e0225ce594 300 Pfam PF00583 Acetyltransferase (GNAT) family 40 133 4.3E-10 T 13-10-2018 IPR000182 GNAT domain BMD_2032 580a932507dc0df02edc46e0225ce594 300 SUPERFAMILY SSF55729 2 283 7.34E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2032 580a932507dc0df02edc46e0225ce594 300 Gene3D G3DSA:3.40.630.30 16 160 4.0E-17 T 13-10-2018 BMD_4773 40856dc060e82c943caadf5d165cdb10 373 PIRSF PIRSF000183 1 371 8.2E-192 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 BMD_4773 40856dc060e82c943caadf5d165cdb10 373 SUPERFAMILY SSF52283 2 360 7.06E-68 T 13-10-2018 BMD_4773 40856dc060e82c943caadf5d165cdb10 373 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 1.1E-46 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BMD_4773 40856dc060e82c943caadf5d165cdb10 373 SUPERFAMILY SSF51735 136 303 1.56E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4773 40856dc060e82c943caadf5d165cdb10 373 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 13-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 BMD_4773 40856dc060e82c943caadf5d165cdb10 373 SMART SM01003 4 136 5.0E-78 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BMD_4773 40856dc060e82c943caadf5d165cdb10 373 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 2 370 6.7E-180 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 BMD_4773 40856dc060e82c943caadf5d165cdb10 373 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 BMD_4773 40856dc060e82c943caadf5d165cdb10 373 SMART SM01002 148 297 7.2E-88 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BMD_4773 40856dc060e82c943caadf5d165cdb10 373 Gene3D G3DSA:3.40.50.720 3 352 1.0E-139 T 13-10-2018 BMD_4773 40856dc060e82c943caadf5d165cdb10 373 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 142 352 6.8E-84 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BMD_4773 40856dc060e82c943caadf5d165cdb10 373 Gene3D G3DSA:3.40.50.720 129 305 1.0E-139 T 13-10-2018 BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 Gene3D G3DSA:3.20.80.10 189 271 8.7E-10 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 Gene3D G3DSA:1.10.1660.10 7 154 2.0E-23 T 13-10-2018 BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 Pfam PF06445 GyrI-like small molecule binding domain 203 269 6.5E-9 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 SMART SM00422 9 78 1.5E-16 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 SUPERFAMILY SSF55136 124 268 2.44E-18 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 ProSitePatterns PS00552 MerR-type HTH domain signature. 12 34 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 SUPERFAMILY SSF46955 9 118 2.82E-20 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 Pfam PF13411 MerR HTH family regulatory protein 10 77 9.0E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3717 1264d3a2876c9ae6501fa8179f3c65bb 275 SMART SM00871 123 269 6.3E-5 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding BMD_4131 ffed91a492f13b3f9426e2c32b4ce30c 326 TIGRFAM TIGR02873 spore_ylxY: probable sporulation protein, polysaccharide deacetylase family 46 313 7.5E-132 T 13-10-2018 IPR014228 Sporulation protein, polysaccharide deacetylase, YlxY BMD_4131 ffed91a492f13b3f9426e2c32b4ce30c 326 Gene3D G3DSA:3.20.20.370 115 322 3.1E-60 T 13-10-2018 BMD_4131 ffed91a492f13b3f9426e2c32b4ce30c 326 Pfam PF01522 Polysaccharide deacetylase 126 245 8.7E-31 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_4131 ffed91a492f13b3f9426e2c32b4ce30c 326 SUPERFAMILY SSF88713 103 313 2.22E-59 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 Pfam PF00448 SRP54-type protein, GTPase domain 101 297 1.9E-78 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 SMART SM00963 2 87 9.0E-34 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 Gene3D G3DSA:1.20.120.140 6 307 6.2E-128 T 13-10-2018 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 270 283 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 Gene3D G3DSA:3.40.50.300 91 286 6.2E-128 T 13-10-2018 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 Pfam PF02978 Signal peptide binding domain 329 427 1.2E-34 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 6 442 35.189 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 SMART SM00962 101 297 1.4E-119 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 SMART SM00382 100 275 2.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 Gene3D G3DSA:1.10.260.30 328 445 1.1E-45 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 Pfam PF02881 SRP54-type protein, helical bundle domain 6 83 4.9E-23 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 SUPERFAMILY SSF47446 329 430 8.67E-39 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 429 3.4E-191 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 BMD_4202 5d219f4a8284a900dc93ccb49448f441 447 SUPERFAMILY SSF52540 43 355 6.11E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4992 4ab9bc75bddd99466450560373172023 792 Gene3D G3DSA:3.40.50.720 1 206 1.4E-64 T 13-10-2018 BMD_4992 4ab9bc75bddd99466450560373172023 792 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 203 3.0E-42 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_4992 4ab9bc75bddd99466450560373172023 792 Pfam PF00378 Enoyl-CoA hydratase/isomerase 488 620 6.6E-11 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_4992 4ab9bc75bddd99466450560373172023 792 Gene3D G3DSA:3.90.226.10 483 684 9.5E-27 T 13-10-2018 BMD_4992 4ab9bc75bddd99466450560373172023 792 SUPERFAMILY SSF52096 480 789 4.97E-38 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4992 4ab9bc75bddd99466450560373172023 792 SUPERFAMILY SSF48179 355 446 1.11E-17 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4992 4ab9bc75bddd99466450560373172023 792 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 362 412 2.5E-6 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_4992 4ab9bc75bddd99466450560373172023 792 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 206 303 3.8E-9 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_4992 4ab9bc75bddd99466450560373172023 792 SUPERFAMILY SSF48179 204 324 1.19E-20 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4992 4ab9bc75bddd99466450560373172023 792 SUPERFAMILY SSF51735 1 204 3.55E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4992 4ab9bc75bddd99466450560373172023 792 Gene3D G3DSA:1.10.1040.10 357 471 8.5E-9 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_4992 4ab9bc75bddd99466450560373172023 792 Gene3D G3DSA:1.10.1040.10 207 332 3.7E-17 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_3616 9977b491d50b7876ca454ac7a4121068 365 SUPERFAMILY SSF63829 23 333 1.9E-23 T 13-10-2018 BMD_3616 9977b491d50b7876ca454ac7a4121068 365 Pfam PF03022 Major royal jelly protein 80 342 1.0E-33 T 13-10-2018 IPR017996 Major royal jelly protein/protein yellow BMD_3616 9977b491d50b7876ca454ac7a4121068 365 Gene3D G3DSA:2.120.10.30 9 359 6.1E-122 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 Pfam PF04542 Sigma-70 region 2 10 76 1.5E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 Pfam PF08281 Sigma-70, region 4 111 156 1.5E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 159 2.0E-26 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 SUPERFAMILY SSF88659 107 159 8.78E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 TIGRFAM TIGR02950 SigM_subfam: RNA polymerase sigma factor, SigM family 7 160 4.0E-56 T 13-10-2018 IPR014296 RNA polymerase sigma-M, bacillaceae GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 Gene3D G3DSA:1.10.1740.10 1 79 8.4E-21 T 13-10-2018 BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 Gene3D G3DSA:1.10.10.10 107 163 4.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2121 824fa79a91dc4c7b857079569aeca6f0 164 SUPERFAMILY SSF88946 4 93 9.42E-21 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 Gene3D G3DSA:1.20.140.10 256 419 5.9E-46 T 13-10-2018 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 SUPERFAMILY SSF47203 250 419 3.38E-41 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 146 239 5.6E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 Gene3D G3DSA:1.20.140.10 420 592 4.0E-35 T 13-10-2018 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 148 160 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 Gene3D G3DSA:2.40.110.10 145 255 1.2E-32 T 13-10-2018 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 SUPERFAMILY SSF56645 23 262 4.32E-72 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 Gene3D G3DSA:1.10.540.10 2 143 5.0E-42 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 251 412 1.9E-34 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BMD_2324 30003f3d089a994ec1e8825d1f0c24c8 592 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 30 142 1.7E-30 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_1201 778d4394457fd217674dddc8ce847989 320 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 180 311 1.8E-63 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BMD_1201 778d4394457fd217674dddc8ce847989 320 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 5 164 36.539 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_1201 778d4394457fd217674dddc8ce847989 320 Pfam PF01625 Peptide methionine sulfoxide reductase 8 158 3.1E-60 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_1201 778d4394457fd217674dddc8ce847989 320 SUPERFAMILY SSF55068 3 170 6.8E-72 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_1201 778d4394457fd217674dddc8ce847989 320 Gene3D G3DSA:3.30.1060.10 1 164 1.7E-65 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_1201 778d4394457fd217674dddc8ce847989 320 Gene3D G3DSA:2.170.150.20 174 320 4.7E-58 T 13-10-2018 BMD_1201 778d4394457fd217674dddc8ce847989 320 Pfam PF01641 SelR domain 183 302 4.6E-48 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BMD_1201 778d4394457fd217674dddc8ce847989 320 SUPERFAMILY SSF51316 179 317 6.28E-59 T 13-10-2018 IPR011057 Mss4-like superfamily BMD_1201 778d4394457fd217674dddc8ce847989 320 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 6 157 5.9E-64 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_1201 778d4394457fd217674dddc8ce847989 320 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 170 303 36.727 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BMD_4633 1d4ea39a45cfa963bfe705976f8f8e79 219 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 16 210 3.1E-22 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00086 318 359 66.0 T 13-10-2018 IPR001610 PAC motif BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00086 441 483 1.2E-6 T 13-10-2018 IPR001610 PAC motif BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00086 195 237 1.5 T 13-10-2018 IPR001610 PAC motif BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Pfam PF00990 Diguanylate cyclase, GGDEF domain 494 651 1.9E-49 T 13-10-2018 IPR000160 GGDEF domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SUPERFAMILY SSF55785 385 483 1.19E-20 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SUPERFAMILY SSF55785 114 235 5.76E-20 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00267 483 655 5.6E-63 T 13-10-2018 IPR000160 GGDEF domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 117 244 2.5E-20 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 380 490 2.0E-11 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 246 366 4.1E-9 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00091 121 189 3.9E-5 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00091 373 439 0.0044 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00091 249 316 0.065 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SMART SM00091 5 80 220.0 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Gene3D G3DSA:3.30.450.20 381 491 1.9E-23 T 13-10-2018 BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SUPERFAMILY SSF55073 499 656 1.33E-45 T 13-10-2018 IPR029787 Nucleotide cyclase BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Gene3D G3DSA:3.30.450.20 3 116 6.3E-7 T 13-10-2018 BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Pfam PF13426 PAS domain 132 235 2.1E-12 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Pfam PF13426 PAS domain 261 357 5.7E-7 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Pfam PF13426 PAS domain 385 482 2.1E-13 T 13-10-2018 IPR000014 PAS domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 491 653 2.3E-44 T 13-10-2018 IPR000160 GGDEF domain BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 SUPERFAMILY SSF55785 234 357 9.6E-17 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Gene3D G3DSA:3.30.70.270 492 657 1.9E-56 T 13-10-2018 BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Gene3D G3DSA:3.30.450.20 246 365 2.9E-16 T 13-10-2018 BMD_1051 81f1dea547e4284a1c189d22dd54beb9 657 Gene3D G3DSA:3.30.450.20 117 245 6.5E-24 T 13-10-2018 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 SUPERFAMILY SSF103263 1 387 1.14E-149 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 TIGRFAM TIGR00033 aroC: chorismate synthase 1 367 1.6E-132 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 ProSitePatterns PS00789 Chorismate synthase signature 3. 337 353 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 PIRSF PIRSF001456 1 385 4.2E-130 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 Gene3D G3DSA:3.60.150.10 1 388 1.7E-155 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 Hamap MF_00300 Chorismate synthase [aroC]. 1 370 36.86 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 ProSitePatterns PS00787 Chorismate synthase signature 1. 7 22 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 Pfam PF01264 Chorismate synthase 1 362 7.1E-125 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3029 88b7114f3ddd9ba59177eeb13d7e80bd 388 ProSitePatterns PS00788 Chorismate synthase signature 2. 129 145 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 141 224 1.6E-12 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 Gene3D G3DSA:1.20.140.10 247 393 6.2E-25 T 13-10-2018 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 Gene3D G3DSA:1.10.540.10 24 126 1.1E-27 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 PIRSF PIRSF016578 6 398 4.4E-30 T 13-10-2018 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 SUPERFAMILY SSF56645 20 235 2.36E-50 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 123 7.3E-23 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 SUPERFAMILY SSF47203 249 397 5.48E-24 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 253 393 6.4E-18 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BMD_3332 44e1b845fcc72d84dc8a283890423b46 406 Gene3D G3DSA:2.40.110.10 130 244 2.9E-20 T 13-10-2018 BMD_0791 3923570e44ba3153e8341f64e9aa164a 65 TIGRFAM TIGR03833 TIGR03833: conserved hypothetical protein 2 63 3.4E-34 T 13-10-2018 IPR019240 Protein of unknown function DUF2196 BMD_0791 3923570e44ba3153e8341f64e9aa164a 65 Pfam PF09962 Uncharacterized conserved protein (DUF2196) 2 62 1.9E-32 T 13-10-2018 IPR019240 Protein of unknown function DUF2196 BMD_3404 a819c917440d7520bed7762daaa3519a 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.5E-29 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3404 a819c917440d7520bed7762daaa3519a 67 Gene3D G3DSA:2.40.50.140 1 66 8.1E-30 T 13-10-2018 BMD_3404 a819c917440d7520bed7762daaa3519a 67 SMART SM00357 3 66 1.2E-29 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_3404 a819c917440d7520bed7762daaa3519a 67 SUPERFAMILY SSF50249 1 65 2.91E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_3404 a819c917440d7520bed7762daaa3519a 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_3404 a819c917440d7520bed7762daaa3519a 67 PIRSF PIRSF002599 1 67 2.1E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_3404 a819c917440d7520bed7762daaa3519a 67 PRINTS PR00050 Cold shock protein signature 24 33 4.8E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3404 a819c917440d7520bed7762daaa3519a 67 PRINTS PR00050 Cold shock protein signature 4 19 4.8E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3404 a819c917440d7520bed7762daaa3519a 67 PRINTS PR00050 Cold shock protein signature 39 57 4.8E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Pfam PF03793 PASTA domain 425 483 1.3E-8 T 13-10-2018 IPR005543 PASTA domain BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Pfam PF03793 PASTA domain 352 412 7.1E-11 T 13-10-2018 IPR005543 PASTA domain BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Pfam PF03793 PASTA domain 489 549 1.1E-10 T 13-10-2018 IPR005543 PASTA domain BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Pfam PF00069 Protein kinase domain 2 240 4.9E-51 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 SMART SM00220 1 250 8.8E-61 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Gene3D G3DSA:1.10.510.10 71 261 2.1E-54 T 13-10-2018 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 SUPERFAMILY SSF56112 2 248 5.8E-78 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Gene3D G3DSA:3.30.10.20 351 418 2.8E-12 T 13-10-2018 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Gene3D G3DSA:3.30.10.20 487 552 1.8E-13 T 13-10-2018 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Gene3D G3DSA:3.30.10.20 423 485 3.3E-10 T 13-10-2018 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Gene3D G3DSA:3.30.200.20 1 69 7.2E-23 T 13-10-2018 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 SMART SM00740 484 550 1.0E-14 T 13-10-2018 IPR005543 PASTA domain BMD_4222 f1f099b55680b2998601f0530ca119f3 660 SMART SM00740 348 415 1.5E-10 T 13-10-2018 IPR005543 PASTA domain BMD_4222 f1f099b55680b2998601f0530ca119f3 660 SMART SM00740 416 483 0.0026 T 13-10-2018 IPR005543 PASTA domain BMD_4222 f1f099b55680b2998601f0530ca119f3 660 Gene3D G3DSA:2.60.40.2560 581 658 6.2E-24 T 13-10-2018 BMD_4222 f1f099b55680b2998601f0530ca119f3 660 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 109 121 - T 13-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 SMART SM00930 260 336 1.0E-22 T 13-10-2018 IPR018449 NIL domain BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 SUPERFAMILY SSF52540 1 240 2.8E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 Pfam PF09383 NIL domain 263 335 4.9E-16 T 13-10-2018 IPR018449 NIL domain BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 SMART SM00382 30 218 3.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 Pfam PF00005 ABC transporter 21 169 8.2E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 SUPERFAMILY SSF55021 251 337 1.6E-17 T 13-10-2018 BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 Gene3D G3DSA:3.30.70.260 233 337 2.4E-20 T 13-10-2018 BMD_1579 05aab515ca7c27d8abb5e38b0581ab56 337 Gene3D G3DSA:3.40.50.300 1 232 1.4E-76 T 13-10-2018 BMD_5106 921fe248c78818e5fd57d080cbb97517 145 Pfam PF03885 Protein of unknown function (DUF327) 18 144 5.5E-39 T 13-10-2018 IPR005585 Protein of unknown function DUF327 BMD_5106 921fe248c78818e5fd57d080cbb97517 145 Gene3D G3DSA:1.20.120.490 24 145 2.5E-39 T 13-10-2018 IPR024042 TM1646-like domain superfamily BMD_5106 921fe248c78818e5fd57d080cbb97517 145 SUPERFAMILY SSF158397 26 145 6.54E-35 T 13-10-2018 IPR024042 TM1646-like domain superfamily BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 SMART SM01086 614 702 1.7E-29 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Pfam PF07724 AAA domain (Cdc48 subfamily) 442 608 8.1E-54 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 213 225 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 SUPERFAMILY SSF52540 392 681 1.2E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 123 254 1.8E-12 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 554 568 2.1E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 447 465 2.1E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 521 539 2.1E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 492 510 2.1E-36 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Gene3D G3DSA:1.10.8.60 263 383 6.1E-37 T 13-10-2018 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Gene3D G3DSA:3.40.50.300 396 613 3.8E-84 T 13-10-2018 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Gene3D G3DSA:1.10.8.60 614 704 5.7E-25 T 13-10-2018 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Gene3D G3DSA:4.10.860.10 326 376 6.1E-37 T 13-10-2018 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Pfam PF02151 UvrB/uvrC motif 334 367 2.6E-5 T 13-10-2018 IPR001943 UVR domain GO:0005515 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Gene3D G3DSA:3.40.50.300 72 260 1.4E-65 T 13-10-2018 BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 614 685 8.7E-22 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 SUPERFAMILY SSF52540 80 378 1.0E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 SMART SM00382 443 615 8.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 SMART SM00382 118 261 8.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1249 0ce7c7a5ccd8ce3224553b46f65c6539 704 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 477 495 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 BMD_3812 d729b15c6dd7e4592b414d616184771a 464 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_3812 d729b15c6dd7e4592b414d616184771a 464 PIRSF PIRSF006060 1 460 2.0E-82 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3812 d729b15c6dd7e4592b414d616184771a 464 Pfam PF00324 Amino acid permease 16 450 7.8E-121 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_3812 d729b15c6dd7e4592b414d616184771a 464 Gene3D G3DSA:1.20.1740.10 7 460 5.0E-74 T 13-10-2018 BMD_3425 58f80ca90f1423b099ee14a599a03925 467 Pfam PF02614 Glucuronate isomerase 1 464 5.1E-212 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 BMD_3425 58f80ca90f1423b099ee14a599a03925 467 Hamap MF_00675 Uronate isomerase [uxaC]. 2 466 47.049 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 BMD_3425 58f80ca90f1423b099ee14a599a03925 467 SUPERFAMILY SSF51556 2 464 8.84E-172 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_3425 58f80ca90f1423b099ee14a599a03925 467 Gene3D G3DSA:3.20.20.140 7 464 5.0E-196 T 13-10-2018 BMD_3425 58f80ca90f1423b099ee14a599a03925 467 Gene3D G3DSA:1.10.2020.10 46 136 5.0E-196 T 13-10-2018 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 3 489 5.8E-157 T 13-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 SUPERFAMILY SSF51905 2 404 3.59E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 SUPERFAMILY SSF56425 220 329 1.42E-31 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 Gene3D G3DSA:3.50.50.60 5 381 5.6E-141 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 Pfam PF00890 FAD binding domain 5 369 4.4E-86 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 Gene3D G3DSA:3.90.700.10 230 335 5.6E-141 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 Gene3D G3DSA:1.20.58.100 402 505 3.1E-19 T 13-10-2018 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 SUPERFAMILY SSF46977 411 501 1.83E-19 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 PIRSF PIRSF000171 449 513 0.012 T 13-10-2018 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 PIRSF PIRSF000171 1 422 1.7E-30 T 13-10-2018 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 Pfam PF02910 Fumarate reductase flavoprotein C-term 411 503 6.7E-11 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.2E-9 T 13-10-2018 BMD_4638 0548febe055f99cf925ce068d67ee5e5 514 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 332 354 4.2E-9 T 13-10-2018 BMD_2857 84d711f1c5a0d597056adaf12e53cb1f 178 Gene3D G3DSA:3.40.50.1240 1 173 2.8E-12 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_2857 84d711f1c5a0d597056adaf12e53cb1f 178 SUPERFAMILY SSF53254 47 175 1.26E-12 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_2857 84d711f1c5a0d597056adaf12e53cb1f 178 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 45 165 1.3E-10 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_2430 98649bae0705032d6b58aa0eba4cf402 141 SUPERFAMILY SSF54637 2 138 4.39E-42 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_2430 98649bae0705032d6b58aa0eba4cf402 141 Pfam PF07977 FabA-like domain 13 133 4.3E-31 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_2430 98649bae0705032d6b58aa0eba4cf402 141 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 141 30.578 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_2430 98649bae0705032d6b58aa0eba4cf402 141 Gene3D G3DSA:3.10.129.10 1 140 9.9E-54 T 13-10-2018 BMD_2430 98649bae0705032d6b58aa0eba4cf402 141 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 3 138 9.3E-51 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_2302 b3b73c5bcf14a67a629e2ec48da68c54 239 Pfam PF13599 Pentapeptide repeats (9 copies) 146 220 3.4E-15 T 13-10-2018 IPR001646 Pentapeptide repeat BMD_2302 b3b73c5bcf14a67a629e2ec48da68c54 239 Pfam PF13599 Pentapeptide repeats (9 copies) 83 143 3.6E-8 T 13-10-2018 IPR001646 Pentapeptide repeat BMD_2302 b3b73c5bcf14a67a629e2ec48da68c54 239 Gene3D G3DSA:2.160.20.100 45 238 1.1E-33 T 13-10-2018 BMD_2302 b3b73c5bcf14a67a629e2ec48da68c54 239 SUPERFAMILY SSF141571 81 231 2.35E-32 T 13-10-2018 BMD_1551 61e190b9f2461407c7426cb86628dd38 447 Pfam PF00324 Amino acid permease 21 387 2.6E-53 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_1551 61e190b9f2461407c7426cb86628dd38 447 Gene3D G3DSA:1.20.1740.10 11 446 2.8E-49 T 13-10-2018 BMD_1551 61e190b9f2461407c7426cb86628dd38 447 PIRSF PIRSF006060 8 443 1.5E-49 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 Pfam PF13353 4Fe-4S single cluster domain 22 128 1.3E-8 T 13-10-2018 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 SMART SM00729 14 222 1.6E-14 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 SUPERFAMILY SSF102114 6 282 1.96E-78 T 13-10-2018 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 Pfam PF06463 Molybdenum Cofactor Synthesis C 190 316 1.0E-36 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 5 338 40.706 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 Gene3D G3DSA:3.20.20.70 2 338 1.6E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 6 338 1.0E-119 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5023 c04c6b9e96dbc2dd28875271e9e655c4 338 Pfam PF04055 Radical SAM superfamily 19 181 3.6E-30 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_2184 25c05f1e13eeb7ad055e5419a2e862e7 343 SUPERFAMILY SSF102114 85 232 6.15E-5 T 13-10-2018 BMD_2184 25c05f1e13eeb7ad055e5419a2e862e7 343 TIGRFAM TIGR04070 photo_TT_lyase: spore photoproduct lyase 6 343 5.8E-156 T 13-10-2018 IPR023897 Spore photoproduct lyase GO:0003913 BMD_2184 25c05f1e13eeb7ad055e5419a2e862e7 343 Gene3D G3DSA:3.80.30.30 117 343 3.3E-91 T 13-10-2018 BMD_2184 25c05f1e13eeb7ad055e5419a2e862e7 343 Gene3D G3DSA:3.40.50.12110 4 116 1.2E-45 T 13-10-2018 BMD_5123 c9b2f587347cb0c360d43340bdde244d 144 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 138 2.5E-59 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_5123 c9b2f587347cb0c360d43340bdde244d 144 Pfam PF07977 FabA-like domain 11 133 7.8E-37 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_5123 c9b2f587347cb0c360d43340bdde244d 144 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 141 35.564 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_5123 c9b2f587347cb0c360d43340bdde244d 144 SUPERFAMILY SSF54637 1 138 7.65E-49 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_5123 c9b2f587347cb0c360d43340bdde244d 144 Gene3D G3DSA:3.10.129.10 1 144 3.6E-60 T 13-10-2018 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 Gene3D G3DSA:3.20.20.70 311 633 5.7E-135 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PIRSF PIRSF005536 1 741 0.0 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 SUPERFAMILY SSF51445 325 669 2.2E-113 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_0459 aa2caebe3db9379e99211e80be432eca 741 Gene3D G3DSA:2.60.40.1180 634 741 7.2E-36 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 467 482 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 293 313 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 546 562 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 331 345 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 242 257 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 521 537 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 409 431 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 PRINTS PR00743 Glycosyl hydrolase family 36 signature 359 374 1.5E-63 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 Pfam PF16875 Glycosyl hydrolase family 36 N-terminal domain 29 286 8.9E-93 T 13-10-2018 IPR031704 Glycosyl hydrolase family 36, N-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 Pfam PF02065 Melibiase 290 636 5.7E-171 T 13-10-2018 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 Pfam PF16874 Glycosyl hydrolase family 36 C-terminal domain 652 738 1.6E-24 T 13-10-2018 IPR031705 Glycosyl hydrolase family 36, C-terminal KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 ProSitePatterns PS00512 Alpha-galactosidase signature. 360 375 - T 13-10-2018 IPR000111 Glycoside hydrolase family 27/36, conserved site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0459 aa2caebe3db9379e99211e80be432eca 741 Gene3D G3DSA:2.70.98.60 1 310 1.7E-118 T 13-10-2018 IPR038417 Alpha-galactosidase, N-terminal domain superfamily KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 SMART SM00845 326 473 6.4E-78 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 474 39.036 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 Gene3D G3DSA:1.10.150.380 298 411 4.4E-37 T 13-10-2018 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 473 2.5E-180 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 SUPERFAMILY SSF55931 4 294 1.63E-119 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 Gene3D G3DSA:1.10.10.410 413 476 5.3E-25 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal BMD_0294 7b5260c4e5f0552d5005765162534b87 476 Pfam PF02637 GatB domain 326 473 3.4E-55 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 Pfam PF02934 GatB/GatE catalytic domain 6 286 3.7E-111 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 142 156 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 BMD_0294 7b5260c4e5f0552d5005765162534b87 476 SUPERFAMILY SSF89095 295 400 4.45E-36 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 BMD_0692 19a36ef78b9616db2e20556fdc232cbf 62 Pfam PF11151 Protein of unknown function (DUF2929) 1 54 9.4E-19 T 13-10-2018 IPR021324 Protein of unknown function DUF2929 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SMART SM00278 475 494 1.2 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SMART SM00278 539 558 2.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SMART SM00278 441 460 93.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 PIRSF PIRSF001604 1 668 3.1E-265 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SUPERFAMILY SSF50249 313 396 1.58E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Gene3D G3DSA:1.10.150.20 500 581 1.1E-28 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Pfam PF14520 Helix-hairpin-helix domain 443 495 2.5E-6 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 318 394 3.6E-34 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Gene3D G3DSA:3.30.470.90 73 313 1.3E-101 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SMART SM00292 592 668 8.6E-12 T 13-10-2018 IPR001357 BRCT domain BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Gene3D G3DSA:2.40.50.140 314 386 7.9E-30 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SMART SM00532 5 443 4.5E-286 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SUPERFAMILY SSF52113 593 664 1.6E-18 T 13-10-2018 IPR036420 BRCT domain superfamily BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 5 314 1.6E-132 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Gene3D G3DSA:2.20.70.80 387 424 1.4E-11 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Gene3D G3DSA:1.10.287.610 1 72 7.5E-28 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 662 2.6E-279 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Gene3D G3DSA:1.10.150.20 427 499 1.2E-32 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 403 429 5.9E-11 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SUPERFAMILY SSF47781 400 580 1.07E-67 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 SUPERFAMILY SSF56091 2 312 1.13E-122 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Gene3D G3DSA:3.40.50.10190 582 667 1.8E-26 T 13-10-2018 IPR036420 BRCT domain superfamily BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 327 342 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Hamap MF_01588 DNA ligase [ligA]. 4 666 54.262 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 593 662 1.9E-13 T 13-10-2018 IPR001357 BRCT domain BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 Pfam PF12826 Helix-hairpin-helix motif 505 568 1.9E-25 T 13-10-2018 BMD_0289 2bc1372c17d1fff72374596eae19bc2f 668 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 SUPERFAMILY SSF55890 325 423 9.29E-14 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 Pfam PF17203 Single cache domain 3 54 173 5.7E-18 T 13-10-2018 IPR033463 Single cache domain 3 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 Gene3D G3DSA:3.30.450.20 36 176 2.2E-36 T 13-10-2018 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 420 525 5.5E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 Gene3D G3DSA:3.30.450.20 204 312 2.7E-12 T 13-10-2018 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 321 370 5.2E-11 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 SUPERFAMILY SSF103190 41 174 4.97E-30 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 Gene3D G3DSA:1.10.287.130 313 376 2.0E-6 T 13-10-2018 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 Gene3D G3DSA:3.30.565.10 385 530 2.9E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 SMART SM00387 419 527 5.4E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 1.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 471 1.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 524 1.2E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2292 941218d7f7811c67a9a19b3e0e478fe2 535 SUPERFAMILY SSF55874 396 524 5.11E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0295 2a6297b740d6b4cf6d44f6f62802baec 310 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 298 8.4E-113 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase BMD_0295 2a6297b740d6b4cf6d44f6f62802baec 310 Gene3D G3DSA:3.40.50.10330 6 124 8.8E-90 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 BMD_0295 2a6297b740d6b4cf6d44f6f62802baec 310 Gene3D G3DSA:2.60.200.40 125 282 8.8E-90 T 13-10-2018 BMD_0295 2a6297b740d6b4cf6d44f6f62802baec 310 SUPERFAMILY SSF111331 1 298 3.27E-85 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BMD_0295 2a6297b740d6b4cf6d44f6f62802baec 310 Pfam PF00781 Diacylglycerol kinase catalytic domain 4 126 1.6E-36 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BMD_0295 2a6297b740d6b4cf6d44f6f62802baec 310 SMART SM00046 3 125 6.9E-5 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 BMD_2525 3e09c99328e16cafdf3a6b4082c0354f 479 Pfam PF00324 Amino acid permease 15 464 4.5E-138 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_2525 3e09c99328e16cafdf3a6b4082c0354f 479 Gene3D G3DSA:1.20.1740.10 5 474 7.5E-63 T 13-10-2018 BMD_2525 3e09c99328e16cafdf3a6b4082c0354f 479 ProSitePatterns PS00218 Amino acid permeases signature. 40 71 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_2525 3e09c99328e16cafdf3a6b4082c0354f 479 PIRSF PIRSF006060 1 470 8.6E-88 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3143 707a2c5fe0d94903a9a4813fcb093705 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 1.5E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3143 707a2c5fe0d94903a9a4813fcb093705 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 1.5E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3143 707a2c5fe0d94903a9a4813fcb093705 189 Gene3D G3DSA:1.10.357.10 54 186 9.3E-14 T 13-10-2018 BMD_3143 707a2c5fe0d94903a9a4813fcb093705 189 Gene3D G3DSA:1.10.10.60 6 53 1.6E-20 T 13-10-2018 BMD_3143 707a2c5fe0d94903a9a4813fcb093705 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 8.3E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3143 707a2c5fe0d94903a9a4813fcb093705 189 SUPERFAMILY SSF46689 3 82 3.39E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2529 a143d899ac2a110e7c03223e612087df 105 SUPERFAMILY SSF51182 45 103 7.78E-14 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_2529 a143d899ac2a110e7c03223e612087df 105 Gene3D G3DSA:2.60.120.10 40 104 2.1E-13 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_2529 a143d899ac2a110e7c03223e612087df 105 Pfam PF07883 Cupin domain 44 89 2.3E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_1365 fbfe898475b49342b5682f8768dd498f 266 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 128 1.6E-33 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 131 264 5.2E-32 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 4 266 2.2E-90 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 PIRSF PIRSF000161 2 266 4.3E-70 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 Gene3D G3DSA:3.30.360.10 130 235 1.5E-76 T 13-10-2018 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 SUPERFAMILY SSF55347 129 237 1.2E-36 T 13-10-2018 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 SUPERFAMILY SSF51735 3 154 5.0E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1365 fbfe898475b49342b5682f8768dd498f 266 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 4 266 30.58 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1365 fbfe898475b49342b5682f8768dd498f 266 Gene3D G3DSA:3.40.50.720 5 263 1.5E-76 T 13-10-2018 BMD_0395 00f9d08a628540edfb974329c0bdcbf5 375 Gene3D G3DSA:3.20.20.140 57 334 4.7E-110 T 13-10-2018 BMD_0395 00f9d08a628540edfb974329c0bdcbf5 375 SUPERFAMILY SSF51338 3 372 2.62E-26 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0395 00f9d08a628540edfb974329c0bdcbf5 375 Gene3D G3DSA:2.30.40.10 6 368 4.7E-110 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0395 00f9d08a628540edfb974329c0bdcbf5 375 Pfam PF01979 Amidohydrolase family 53 370 4.9E-19 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_0395 00f9d08a628540edfb974329c0bdcbf5 375 SUPERFAMILY SSF51556 56 338 8.17E-42 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 SUPERFAMILY SSF100879 249 345 8.32E-23 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 SUPERFAMILY SSF56672 9 242 2.13E-73 T 13-10-2018 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Gene3D G3DSA:1.10.150.20 176 243 2.3E-15 T 13-10-2018 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Pfam PF11799 impB/mucB/samB family C-terminal domain 249 350 1.6E-18 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Gene3D G3DSA:3.30.70.270 12 172 8.8E-53 T 13-10-2018 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Pfam PF00817 impB/mucB/samB family 15 162 4.0E-45 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Gene3D G3DSA:3.30.1490.100 251 358 3.9E-23 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Hamap MF_01113 DNA polymerase IV [dinB]. 9 361 34.909 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Gene3D G3DSA:2.30.40.20 29 82 8.8E-53 T 13-10-2018 BMD_2230 79e5ddd49f9eac863a4ce67ff90e30e4 402 Pfam PF11798 IMS family HHH motif 176 205 9.0E-7 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 BMD_3680 39e14ee07c7dd05a9c3530ff1227e984 296 Pfam PF09130 Domain of unknown function (DUF1932) 194 262 2.0E-10 T 13-10-2018 IPR015814 Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal BMD_3680 39e14ee07c7dd05a9c3530ff1227e984 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 124 1.0E-8 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_3680 39e14ee07c7dd05a9c3530ff1227e984 296 Gene3D G3DSA:3.40.50.720 2 172 1.2E-30 T 13-10-2018 BMD_3680 39e14ee07c7dd05a9c3530ff1227e984 296 SUPERFAMILY SSF51735 2 162 1.66E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3680 39e14ee07c7dd05a9c3530ff1227e984 296 Gene3D G3DSA:1.10.1040.10 174 293 3.0E-27 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_3680 39e14ee07c7dd05a9c3530ff1227e984 296 SUPERFAMILY SSF48179 166 274 9.18E-23 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 Gene3D G3DSA:3.40.30.10 1 158 1.5E-71 T 13-10-2018 BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 PIRSF PIRSF000303 1 158 2.1E-67 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 PRINTS PR01011 Glutathione peroxidase family signature 21 38 1.5E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 PRINTS PR01011 Glutathione peroxidase family signature 56 72 1.5E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 PRINTS PR01011 Glutathione peroxidase family signature 122 131 1.5E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 SUPERFAMILY SSF52833 1 158 7.13E-62 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 13-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 BMD_1940 f8e7f91a0cbbc62fdc22a8ebef3d49a8 158 Pfam PF00255 Glutathione peroxidase 3 109 4.8E-42 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 SMART SM00382 329 473 8.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1876 cba4e8119345cc650590503a5270a2fa 625 Gene3D G3DSA:3.30.450.40 16 203 3.4E-59 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_1876 cba4e8119345cc650590503a5270a2fa 625 SUPERFAMILY SSF46689 575 625 1.76E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 Gene3D G3DSA:3.40.50.300 298 480 6.2E-64 T 13-10-2018 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 Pfam PF02954 Bacterial regulatory protein, Fis family 583 623 5.0E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 Gene3D G3DSA:1.10.10.60 562 625 1.5E-11 T 13-10-2018 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 SUPERFAMILY SSF55781 66 206 1.33E-5 T 13-10-2018 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 SUPERFAMILY SSF52540 311 533 1.84E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1876 cba4e8119345cc650590503a5270a2fa 625 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 333 346 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 Pfam PF00158 Sigma-54 interaction domain 312 476 1.9E-69 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 518 527 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BMD_1876 cba4e8119345cc650590503a5270a2fa 625 Pfam PF01590 GAF domain 87 202 6.0E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 Gene3D G3DSA:1.10.8.60 481 541 6.6E-16 T 13-10-2018 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 606 625 1.5E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_1876 cba4e8119345cc650590503a5270a2fa 625 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 589 606 1.5E-8 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_0752 2eecec752ffe9af0e6ad60f6c2d49f2e 281 Pfam PF01418 Helix-turn-helix domain, rpiR family 4 76 9.7E-25 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BMD_0752 2eecec752ffe9af0e6ad60f6c2d49f2e 281 Pfam PF01380 SIS domain 126 255 8.0E-22 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0752 2eecec752ffe9af0e6ad60f6c2d49f2e 281 Gene3D G3DSA:3.40.50.10490 94 280 2.4E-52 T 13-10-2018 BMD_0752 2eecec752ffe9af0e6ad60f6c2d49f2e 281 Gene3D G3DSA:1.10.10.10 1 83 1.1E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0752 2eecec752ffe9af0e6ad60f6c2d49f2e 281 SUPERFAMILY SSF46689 2 79 1.34E-22 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0752 2eecec752ffe9af0e6ad60f6c2d49f2e 281 SUPERFAMILY SSF53697 94 278 6.15E-47 T 13-10-2018 BMD_4483 8990228114e1f9c88d113749b0ac4909 85 ProDom PD059814 YQGY TRANSMEMBRANE MEMBRANE PRECURSOR BH2821 SIGNAL 9 85 1.0E-29 T 13-10-2018 IPR020254 Protein of unknown function DUF2626 BMD_4483 8990228114e1f9c88d113749b0ac4909 85 Pfam PF11117 Protein of unknown function (DUF2626) 9 81 1.8E-36 T 13-10-2018 IPR020254 Protein of unknown function DUF2626 BMD_4470 7394a025361e78bb949d940803df88a0 448 PIRSF PIRSF006815 3 447 8.1E-188 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 BMD_4470 7394a025361e78bb949d940803df88a0 448 Gene3D G3DSA:3.40.640.10 84 349 4.8E-164 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4470 7394a025361e78bb949d940803df88a0 448 SUPERFAMILY SSF53383 3 443 1.55E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4470 7394a025361e78bb949d940803df88a0 448 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 3 446 49.99 T 13-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 BMD_4470 7394a025361e78bb949d940803df88a0 448 Pfam PF02347 Glycine cleavage system P-protein 3 442 5.8E-165 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BMD_4470 7394a025361e78bb949d940803df88a0 448 Gene3D G3DSA:3.90.1150.10 73 443 4.8E-164 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_5058 3303120c1118f4b4f7a91263f1098bad 210 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 4 208 56.494 T 13-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 BMD_5058 3303120c1118f4b4f7a91263f1098bad 210 Gene3D G3DSA:3.40.190.10 95 176 1.3E-79 T 13-10-2018 BMD_5058 3303120c1118f4b4f7a91263f1098bad 210 SUPERFAMILY SSF53850 2 207 5.86E-66 T 13-10-2018 BMD_5058 3303120c1118f4b4f7a91263f1098bad 210 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 143 164 - T 13-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 BMD_5058 3303120c1118f4b4f7a91263f1098bad 210 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 5 184 4.4E-62 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BMD_5058 3303120c1118f4b4f7a91263f1098bad 210 Pfam PF01634 ATP phosphoribosyltransferase 54 204 1.3E-50 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BMD_5058 3303120c1118f4b4f7a91263f1098bad 210 Gene3D G3DSA:3.40.190.10 6 199 1.3E-79 T 13-10-2018 BMD_4677 83e026d795536075eebd651cbc269172 421 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 311 389 1.2E-17 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_4677 83e026d795536075eebd651cbc269172 421 Gene3D G3DSA:3.30.50.30 3 50 1.4E-21 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily BMD_4677 83e026d795536075eebd651cbc269172 421 Gene3D G3DSA:1.10.8.60 310 417 2.4E-37 T 13-10-2018 BMD_4677 83e026d795536075eebd651cbc269172 421 SUPERFAMILY SSF57716 11 46 2.85E-11 T 13-10-2018 BMD_4677 83e026d795536075eebd651cbc269172 421 Pfam PF06689 ClpX C4-type zinc finger 12 48 5.2E-20 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BMD_4677 83e026d795536075eebd651cbc269172 421 SMART SM00994 10 49 5.4E-23 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BMD_4677 83e026d795536075eebd651cbc269172 421 SUPERFAMILY SSF52540 59 394 1.86E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4677 83e026d795536075eebd651cbc269172 421 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 2 405 1.3E-214 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BMD_4677 83e026d795536075eebd651cbc269172 421 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 409 53.347 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BMD_4677 83e026d795536075eebd651cbc269172 421 SMART SM00382 108 269 3.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4677 83e026d795536075eebd651cbc269172 421 Pfam PF07724 AAA domain (Cdc48 subfamily) 109 304 1.9E-51 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_4677 83e026d795536075eebd651cbc269172 421 Gene3D G3DSA:3.40.50.300 53 309 7.9E-108 T 13-10-2018 BMD_4677 83e026d795536075eebd651cbc269172 421 SMART SM01086 311 405 5.1E-33 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_1300 2be8557a581589758f66089fc8c851d1 707 SUPERFAMILY SSF56024 521 701 6.5E-69 T 13-10-2018 BMD_1300 2be8557a581589758f66089fc8c851d1 707 Pfam PF02503 Polyphosphate kinase middle domain 138 341 3.9E-67 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 SUPERFAMILY SSF56024 337 517 2.47E-56 T 13-10-2018 BMD_1300 2be8557a581589758f66089fc8c851d1 707 PIRSF PIRSF015589 2 707 2.0E-273 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 Pfam PF13089 Polyphosphate kinase N-terminal domain 20 127 3.8E-40 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 Gene3D G3DSA:3.30.1840.10 13 330 2.7E-108 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 Pfam PF13090 Polyphosphate kinase C-terminal domain 351 698 1.9E-152 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 SUPERFAMILY SSF143724 125 324 2.16E-56 T 13-10-2018 BMD_1300 2be8557a581589758f66089fc8c851d1 707 SUPERFAMILY SSF140356 17 121 6.15E-38 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 19 699 1.3E-272 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 Hamap MF_00347 Polyphosphate kinase [ppk]. 17 703 28.385 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BMD_1300 2be8557a581589758f66089fc8c851d1 707 Gene3D G3DSA:3.30.870.10 338 520 1.2E-73 T 13-10-2018 BMD_1300 2be8557a581589758f66089fc8c851d1 707 Gene3D G3DSA:3.30.870.10 521 706 8.0E-69 T 13-10-2018 BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 SUPERFAMILY SSF52540 296 529 4.14E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 SUPERFAMILY SSF52540 2 250 1.27E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 Pfam PF00005 ABC transporter 18 184 7.1E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 Pfam PF00005 ABC transporter 335 468 5.1E-14 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 Gene3D G3DSA:3.40.50.300 1 281 1.4E-56 T 13-10-2018 BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 Pfam PF12848 ABC transporter 224 308 2.6E-19 T 13-10-2018 IPR032781 ABC-transporter extension domain BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 Gene3D G3DSA:3.40.50.300 284 538 9.2E-42 T 13-10-2018 BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 SMART SM00382 344 513 0.087 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2173 d86c30f7bbc4909f33040eb5b29cb12f 539 SMART SM00382 26 238 3.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0781 d839490ec3c9191bd6f36632c7bd44af 295 SUPERFAMILY SSF53335 28 290 6.3E-73 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0781 d839490ec3c9191bd6f36632c7bd44af 295 Pfam PF17284 Spermidine synthase tetramerisation domain 28 68 2.4E-12 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_0781 d839490ec3c9191bd6f36632c7bd44af 295 TIGRFAM TIGR00417 speE: spermidine synthase 29 285 1.8E-79 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_0781 d839490ec3c9191bd6f36632c7bd44af 295 Gene3D G3DSA:2.30.140.10 20 71 3.3E-13 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_0781 d839490ec3c9191bd6f36632c7bd44af 295 Gene3D G3DSA:3.40.50.150 73 292 2.3E-62 T 13-10-2018 BMD_0781 d839490ec3c9191bd6f36632c7bd44af 295 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 18 291 33.453 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_0781 d839490ec3c9191bd6f36632c7bd44af 295 Pfam PF01564 Spermine/spermidine synthase domain 75 252 8.0E-44 T 13-10-2018 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 SUPERFAMILY SSF55620 32 211 6.45E-72 T 13-10-2018 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 Pfam PF01227 GTP cyclohydrolase I 36 210 2.0E-71 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 Gene3D G3DSA:1.10.286.10 13 79 1.4E-15 T 13-10-2018 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 30 211 38.031 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 90 106 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 Gene3D G3DSA:3.30.1130.10 81 214 7.1E-57 T 13-10-2018 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 35 212 3.0E-69 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_1089 c4078d777862818f9d106ccf2fb071cf 214 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 138 148 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_1230 0fd8489ed89837301e855222c366601e 352 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 7 347 38.744 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BMD_1230 0fd8489ed89837301e855222c366601e 352 Gene3D G3DSA:1.20.120.420 1 148 5.6E-52 T 13-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BMD_1230 0fd8489ed89837301e855222c366601e 352 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 36 336 7.1E-127 T 13-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BMD_1230 0fd8489ed89837301e855222c366601e 352 SUPERFAMILY SSF100950 3 341 1.0E-115 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_1230 0fd8489ed89837301e855222c366601e 352 Gene3D G3DSA:3.40.50.10470 149 351 6.3E-69 T 13-10-2018 BMD_1230 0fd8489ed89837301e855222c366601e 352 Pfam PF01008 Initiation factor 2 subunit family 49 336 2.9E-87 T 13-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 BMD_1230 0fd8489ed89837301e855222c366601e 352 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 9 336 4.4E-138 T 13-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BMD_3811 6656a42d34cd58a2b9a79a2c15e863b1 462 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_3811 6656a42d34cd58a2b9a79a2c15e863b1 462 Gene3D G3DSA:1.20.1740.10 5 461 2.1E-58 T 13-10-2018 BMD_3811 6656a42d34cd58a2b9a79a2c15e863b1 462 Pfam PF00324 Amino acid permease 14 430 1.3E-106 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_3811 6656a42d34cd58a2b9a79a2c15e863b1 462 PIRSF PIRSF006060 1 461 6.3E-66 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 Hamap MF_01249 HPr kinase/phosphorylase [hprK]. 3 306 42.366 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 TIGRFAM TIGR00679 hpr-ser: HPr(Ser) kinase/phosphatase 6 301 5.0E-120 T 13-10-2018 IPR003755 HPr(Ser) kinase/phosphorylase GO:0000155|GO:0000160|GO:0005524|GO:0006109 BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 Pfam PF02603 HPr Serine kinase N terminus 4 127 1.3E-40 T 13-10-2018 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 Pfam PF07475 HPr Serine kinase C-terminal domain 130 298 8.6E-78 T 13-10-2018 IPR011104 HPr kinase/phosphorylase, C-terminal GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109 BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 Gene3D G3DSA:3.40.1390.20 1 131 7.9E-44 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 SUPERFAMILY SSF75138 3 131 1.44E-40 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 Gene3D G3DSA:3.40.50.300 132 311 1.2E-75 T 13-10-2018 BMD_5063 dadc01ab286e97df96bf6222faefcf50 311 SUPERFAMILY SSF53795 132 297 3.66E-42 T 13-10-2018 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 Pfam PF13396 Phospholipase_D-nuclease N-terminal 17 59 1.3E-10 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 7 483 4.2E-177 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 SUPERFAMILY SSF56024 272 469 8.3E-48 T 13-10-2018 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 SUPERFAMILY SSF56024 101 312 2.11E-55 T 13-10-2018 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 Gene3D G3DSA:3.30.870.10 316 458 4.8E-25 T 13-10-2018 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 Pfam PF13091 PLD-like domain 324 450 3.2E-26 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 Pfam PF13091 PLD-like domain 137 279 2.7E-15 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 SMART SM00155 219 246 1.3E-6 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 SMART SM00155 396 423 1.9E-6 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 PIRSF PIRSF000850 288 399 0.0052 T 13-10-2018 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 PIRSF PIRSF000850 384 483 0.043 T 13-10-2018 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 PIRSF PIRSF000850 98 292 0.001 T 13-10-2018 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 Hamap MF_01916 Cardiolipin synthase. 11 483 43.937 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 BMD_0484 d8f65f75e35c3270433ac8829d8a17c7 483 Gene3D G3DSA:3.30.870.10 115 315 1.3E-47 T 13-10-2018 BMD_0334 15d465eef46bd203b49c3c5ac4cbce42 250 Pfam PF01764 Lipase (class 3) 67 196 8.8E-31 T 13-10-2018 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 BMD_0334 15d465eef46bd203b49c3c5ac4cbce42 250 SUPERFAMILY SSF53474 15 211 1.32E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0334 15d465eef46bd203b49c3c5ac4cbce42 250 Gene3D G3DSA:3.40.50.1820 21 244 7.0E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 SUPERFAMILY SSF50685 273 321 1.92E-9 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 SUPERFAMILY SSF54106 77 120 1.57E-12 T 13-10-2018 BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 SUPERFAMILY SSF54106 29 71 2.62E-11 T 13-10-2018 BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 Pfam PF01476 LysM domain 79 120 1.9E-15 T 13-10-2018 IPR018392 LysM domain BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 Pfam PF01476 LysM domain 30 71 9.8E-13 T 13-10-2018 IPR018392 LysM domain BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 Pfam PF06725 3D domain 272 332 7.5E-21 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 Gene3D G3DSA:3.10.350.10 76 129 1.8E-20 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 Gene3D G3DSA:3.10.350.10 25 75 8.0E-18 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 SMART SM00257 78 121 3.0E-17 T 13-10-2018 IPR018392 LysM domain BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 SMART SM00257 29 72 7.6E-14 T 13-10-2018 IPR018392 LysM domain BMD_2994 ed995fc2ae99d0f9a6bdbaa187e981f5 333 Gene3D G3DSA:2.40.40.10 159 325 9.8E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 187 1.4E-4 T 13-10-2018 BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 SUPERFAMILY SSF51735 5 247 2.12E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.6E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.8E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 6.8E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 6.8E-17 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 Gene3D G3DSA:3.40.50.720 1 246 3.9E-86 T 13-10-2018 BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 TIGRFAM TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase 7 247 1.2E-92 T 13-10-2018 IPR011283 Acetoacetyl-CoA reductase GO:0005737|GO:0018454|GO:0042619|GO:0055114 KEGG: 00630+1.1.1.36|KEGG: 00650+1.1.1.36|MetaCyc: PWY-5676|MetaCyc: PWY-5741|MetaCyc: PWY-7216|MetaCyc: PWY-7948 BMD_1215 c42e34bb0183251ae748611bd7b1b4fa 247 Pfam PF00106 short chain dehydrogenase 7 200 8.3E-65 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4978 8aac5aafd32e291eaacddb8f12383fa4 406 Gene3D G3DSA:3.90.1150.10 6 395 2.7E-185 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4978 8aac5aafd32e291eaacddb8f12383fa4 406 PIRSF PIRSF005572 20 404 3.3E-52 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BMD_4978 8aac5aafd32e291eaacddb8f12383fa4 406 Gene3D G3DSA:3.40.640.10 34 294 2.7E-185 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4978 8aac5aafd32e291eaacddb8f12383fa4 406 SUPERFAMILY SSF53383 2 398 3.42E-134 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4978 8aac5aafd32e291eaacddb8f12383fa4 406 Pfam PF00266 Aminotransferase class-V 23 391 9.0E-165 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_4978 8aac5aafd32e291eaacddb8f12383fa4 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 215 234 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BMD_4978 8aac5aafd32e291eaacddb8f12383fa4 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 5 402 5.6E-192 T 13-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BMD_2990 440bce873d74d3a87aa64bc98429e895 108 Pfam PF00699 Urease beta subunit 3 98 1.4E-42 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2990 440bce873d74d3a87aa64bc98429e895 108 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 30.835 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2990 440bce873d74d3a87aa64bc98429e895 108 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 101 2.1E-44 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2990 440bce873d74d3a87aa64bc98429e895 108 SUPERFAMILY SSF51278 1 105 7.59E-46 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2990 440bce873d74d3a87aa64bc98429e895 108 Gene3D G3DSA:2.10.150.10 1 108 6.3E-47 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_4010 a7e4a21e4fd66ede0c6c5a4479dce24f 234 Pfam PF01048 Phosphorylase superfamily 16 218 1.7E-40 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BMD_4010 a7e4a21e4fd66ede0c6c5a4479dce24f 234 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 4 231 8.9E-109 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 BMD_4010 a7e4a21e4fd66ede0c6c5a4479dce24f 234 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 1 233 47.859 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 BMD_4010 a7e4a21e4fd66ede0c6c5a4479dce24f 234 Gene3D G3DSA:3.40.50.1580 1 233 4.1E-74 T 13-10-2018 BMD_4010 a7e4a21e4fd66ede0c6c5a4479dce24f 234 SUPERFAMILY SSF53167 2 232 4.32E-90 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BMD_4010 a7e4a21e4fd66ede0c6c5a4479dce24f 234 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 Gene3D G3DSA:3.30.450.20 32 193 7.8E-7 T 13-10-2018 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 Pfam PF00512 His Kinase A (phospho-acceptor) domain 326 388 1.5E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 SMART SM00388 324 390 1.5E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 SUPERFAMILY SSF158472 222 273 2.62E-7 T 13-10-2018 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 535 1.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 1.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 516 1.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 SMART SM00387 432 538 5.7E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 Pfam PF00672 HAMP domain 222 271 1.0E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 SUPERFAMILY SSF55874 381 535 8.38E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 Gene3D G3DSA:3.30.565.10 386 536 1.6E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 SMART SM00304 222 274 1.2E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 Gene3D G3DSA:1.10.287.130 221 291 4.3E-8 T 13-10-2018 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 Gene3D G3DSA:1.10.287.130 309 385 1.1E-20 T 13-10-2018 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 SUPERFAMILY SSF47384 311 389 2.55E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_4040 45a9c61999df1f3bb60e4dec2bc344b6 538 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 434 535 9.6E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 SUPERFAMILY SSF54001 170 289 3.24E-39 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 Pfam PF00877 NlpC/P60 family 50 158 2.1E-19 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 Pfam PF00877 NlpC/P60 family 311 413 4.0E-18 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 Pfam PF00877 NlpC/P60 family 181 288 2.0E-29 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 Gene3D G3DSA:3.90.1720.10 292 416 1.5E-31 T 13-10-2018 BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 Gene3D G3DSA:3.90.1720.10 164 291 2.7E-44 T 13-10-2018 BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 Gene3D G3DSA:3.90.1720.10 28 162 2.6E-33 T 13-10-2018 BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 SUPERFAMILY SSF54001 301 415 1.77E-28 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_3801 7a1b178ed69f6acdfe4c8b4f5d6c5492 416 SUPERFAMILY SSF54001 38 162 5.23E-29 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_1974 c339c812119f3da92b3d40ed56b15586 98 SMART SM00966 14 57 1.5E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_1974 c339c812119f3da92b3d40ed56b15586 98 SUPERFAMILY SSF89447 7 57 1.01E-16 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily BMD_1974 c339c812119f3da92b3d40ed56b15586 98 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 14 54 9.6E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_1974 c339c812119f3da92b3d40ed56b15586 98 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 14 55 1.2E-11 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_1974 c339c812119f3da92b3d40ed56b15586 98 Gene3D G3DSA:2.10.260.10 2 56 3.8E-25 T 13-10-2018 BMD_2719 51794828923e4d913a80b1d998987c9d 449 SUPERFAMILY SSF56176 6 204 6.54E-50 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_2719 51794828923e4d913a80b1d998987c9d 449 Gene3D G3DSA:3.30.43.10 8 86 7.7E-25 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 BMD_2719 51794828923e4d913a80b1d998987c9d 449 Pfam PF01565 FAD binding domain 33 158 7.8E-29 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BMD_2719 51794828923e4d913a80b1d998987c9d 449 Gene3D G3DSA:3.30.465.50 93 443 9.6E-97 T 13-10-2018 BMD_2719 51794828923e4d913a80b1d998987c9d 449 Gene3D G3DSA:3.40.462.20 206 397 9.6E-97 T 13-10-2018 BMD_2719 51794828923e4d913a80b1d998987c9d 449 Pfam PF08031 Berberine and berberine like 400 443 2.7E-18 T 13-10-2018 IPR012951 Berberine/berberine-like GO:0016491|GO:0050660|GO:0055114 BMD_3647 482e939d25a1d99d352d35749df7be84 299 SUPERFAMILY SSF53474 49 264 1.89E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3647 482e939d25a1d99d352d35749df7be84 299 Pfam PF12740 Chlorophyllase enzyme 57 166 3.9E-9 T 13-10-2018 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164 BMD_3647 482e939d25a1d99d352d35749df7be84 299 Gene3D G3DSA:3.40.50.1820 33 272 3.1E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3647 482e939d25a1d99d352d35749df7be84 299 PIRSF PIRSF031982 1 299 1.6E-63 T 13-10-2018 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 SUPERFAMILY SSF101386 365 461 4.65E-24 T 13-10-2018 BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 TIGRFAM TIGR00444 mazG: MazG family protein 239 482 2.7E-104 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 PIRSF PIRSF002845 1 485 1.5E-223 T 13-10-2018 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 255 328 3.0E-29 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 392 451 4.8E-9 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 Gene3D G3DSA:1.10.287.1080 356 485 2.0E-43 T 13-10-2018 BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 SUPERFAMILY SSF53790 3 263 5.23E-32 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 Gene3D G3DSA:1.10.287.1080 229 352 6.0E-44 T 13-10-2018 BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 206 7.6E-23 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 SUPERFAMILY SSF101386 231 332 4.36E-25 T 13-10-2018 BMD_0076 e32c15da8efb11b01cea1110febb91e1 486 Gene3D G3DSA:3.40.1010.10 1 119 1.4E-11 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 Pfam PF01476 LysM domain 4 47 2.7E-13 T 13-10-2018 IPR018392 LysM domain BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 Pfam PF01476 LysM domain 53 96 5.5E-12 T 13-10-2018 IPR018392 LysM domain BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 SMART SM00257 52 96 4.7E-10 T 13-10-2018 IPR018392 LysM domain BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 SMART SM00257 3 47 8.2E-14 T 13-10-2018 IPR018392 LysM domain BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 Gene3D G3DSA:3.10.50.10 324 383 1.3E-111 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 SUPERFAMILY SSF54106 51 96 1.83E-9 T 13-10-2018 BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 Pfam PF00704 Glycosyl hydrolases family 18 132 412 1.6E-24 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 SMART SM00636 104 412 7.2E-29 T 13-10-2018 IPR011583 Chitinase II GO:0008061 BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 Gene3D G3DSA:3.20.20.80 130 417 1.3E-111 T 13-10-2018 BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 Gene3D G3DSA:3.10.350.10 51 105 5.1E-13 T 13-10-2018 IPR036779 LysM domain superfamily BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 Gene3D G3DSA:3.10.350.10 1 50 1.4E-13 T 13-10-2018 IPR036779 LysM domain superfamily BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 SUPERFAMILY SSF54106 2 47 1.11E-10 T 13-10-2018 BMD_0021 04ff3d8ae9e4f3f67b5bbdd2fc2bca7a 433 SUPERFAMILY SSF51445 124 429 2.93E-45 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_4969 b69d228277a10a062f151635733725ab 91 Gene3D G3DSA:3.50.4.20 1 91 1.3E-41 T 13-10-2018 IPR038141 YutD-like superfamily BMD_4969 b69d228277a10a062f151635733725ab 91 PIRSF PIRSF012565 1 91 1.1E-47 T 13-10-2018 IPR009370 Protein of unknown function DUF1027 BMD_4969 b69d228277a10a062f151635733725ab 91 Pfam PF06265 Protein of unknown function (DUF1027) 4 87 1.4E-38 T 13-10-2018 IPR009370 Protein of unknown function DUF1027 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 PIRSF PIRSF000445 1 433 1.9E-157 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 Gene3D G3DSA:3.40.50.720 161 313 5.7E-49 T 13-10-2018 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 171 305 9.4E-48 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 417 30.029 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 Gene3D G3DSA:3.30.460.30 1 158 1.5E-54 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 SUPERFAMILY SSF69742 1 158 3.66E-47 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 SUPERFAMILY SSF69075 317 420 4.05E-16 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 420 4.0E-159 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 2.4E-46 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 321 419 1.6E-20 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BMD_4672 12c4ba8d0e127ab5ec3639795650d314 446 SUPERFAMILY SSF51735 162 315 1.69E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3025 3971d54bc617a5e203572563c2354662 514 PRINTS PR00162 Rieske 2Fe-2S subunit signature 488 500 8.4E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BMD_3025 3971d54bc617a5e203572563c2354662 514 PRINTS PR00162 Rieske 2Fe-2S subunit signature 455 466 8.4E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BMD_3025 3971d54bc617a5e203572563c2354662 514 PRINTS PR00162 Rieske 2Fe-2S subunit signature 476 488 8.4E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BMD_3025 3971d54bc617a5e203572563c2354662 514 Gene3D G3DSA:2.102.10.10 405 513 1.8E-26 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_3025 3971d54bc617a5e203572563c2354662 514 SUPERFAMILY SSF51905 30 387 9.58E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3025 3971d54bc617a5e203572563c2354662 514 Gene3D G3DSA:3.30.9.10 124 335 5.3E-44 T 13-10-2018 BMD_3025 3971d54bc617a5e203572563c2354662 514 Pfam PF01266 FAD dependent oxidoreductase 31 374 2.1E-40 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BMD_3025 3971d54bc617a5e203572563c2354662 514 Gene3D G3DSA:3.50.50.60 31 377 5.3E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3025 3971d54bc617a5e203572563c2354662 514 SUPERFAMILY SSF50022 424 506 4.58E-25 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_3025 3971d54bc617a5e203572563c2354662 514 Pfam PF00355 Rieske [2Fe-2S] domain 427 501 8.0E-14 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BMD_1262 5400bf0b144b16aa42388f280eb338cd 281 SUPERFAMILY SSF52151 4 271 5.23E-51 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BMD_1262 5400bf0b144b16aa42388f280eb338cd 281 Gene3D G3DSA:3.40.1090.10 2 91 4.1E-12 T 13-10-2018 BMD_1262 5400bf0b144b16aa42388f280eb338cd 281 Gene3D G3DSA:3.40.1090.10 92 229 8.1E-17 T 13-10-2018 BMD_1262 5400bf0b144b16aa42388f280eb338cd 281 Pfam PF01734 Patatin-like phospholipase 6 170 1.3E-22 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 319 422 1.6E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 SUPERFAMILY SSF55874 276 422 3.89E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 Pfam PF00512 His Kinase A (phospho-acceptor) domain 213 270 1.7E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 SUPERFAMILY SSF47384 205 271 2.16E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 Gene3D G3DSA:3.30.565.10 269 423 2.6E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 SMART SM00388 210 275 6.6E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 SMART SM00387 318 424 3.9E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 Pfam PF07694 5TMR of 5TMR-LYT 47 172 4.1E-6 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 Gene3D G3DSA:1.10.287.130 213 268 3.3E-16 T 13-10-2018 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 369 3.9E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 421 3.9E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 383 3.9E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3920 c4e194e5fcc0ddf4727a7317a8432daf 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 402 3.9E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3882 e07a66c94d2894b9386a1a93d43f1bb2 429 SUPERFAMILY SSF58104 196 426 1.31E-50 T 13-10-2018 BMD_3882 e07a66c94d2894b9386a1a93d43f1bb2 429 Gene3D G3DSA:1.10.287.950 202 429 6.0E-44 T 13-10-2018 BMD_3882 e07a66c94d2894b9386a1a93d43f1bb2 429 Gene3D G3DSA:1.10.490.10 18 174 1.4E-39 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BMD_3882 e07a66c94d2894b9386a1a93d43f1bb2 429 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 262 355 1.7E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BMD_3882 e07a66c94d2894b9386a1a93d43f1bb2 429 Pfam PF11563 Protoglobin 29 182 1.7E-38 T 13-10-2018 BMD_3882 e07a66c94d2894b9386a1a93d43f1bb2 429 SUPERFAMILY SSF46458 20 173 6.33E-32 T 13-10-2018 IPR009050 Globin-like superfamily BMD_3882 e07a66c94d2894b9386a1a93d43f1bb2 429 SMART SM00283 193 428 1.3E-22 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 12 260 33.818 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 Pfam PF02110 Hydroxyethylthiazole kinase family 10 255 3.3E-96 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 10 258 1.0E-98 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 PIRSF PIRSF000513 4 268 2.3E-100 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 31 52 2.4E-43 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 88 105 2.4E-43 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 62 70 2.4E-43 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 119 133 2.4E-43 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 163 180 2.4E-43 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 18 25 2.4E-43 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 SUPERFAMILY SSF53613 6 265 1.45E-64 T 13-10-2018 IPR029056 Ribokinase-like BMD_2115 c1fb373f208f1b38fbe3c4b7d280ca56 268 Gene3D G3DSA:3.40.1190.20 1 268 4.2E-103 T 13-10-2018 IPR029056 Ribokinase-like BMD_3070 afa0f677b983be46b89b02830f02b6e6 288 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 18 221 3.0E-65 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3070 afa0f677b983be46b89b02830f02b6e6 288 PIRSF PIRSF006483 1 287 1.9E-93 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3070 afa0f677b983be46b89b02830f02b6e6 288 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 226 280 1.3E-22 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_3070 afa0f677b983be46b89b02830f02b6e6 288 Gene3D G3DSA:3.30.70.120 198 273 2.2E-25 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 73 86 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 38 53 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 528 540 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 424 438 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 116 130 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 570 586 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 272 285 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 508 525 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR00418 DNA topoisomerase II family signature 490 506 6.3E-73 T 13-10-2018 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Pfam PF00204 DNA gyrase B 225 394 1.7E-63 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 6 638 99.067 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 SUPERFAMILY SSF54211 225 395 3.6E-63 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 36 176 3.6E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Gene3D G3DSA:3.30.230.10 224 402 6.3E-74 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 199 212 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 591 603 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 607 623 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 224 246 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 9 19 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 316 332 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 364 378 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 184 199 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 378 398 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 PRINTS PR01159 DNA gyrase subunit B signature 474 483 2.2E-79 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 ProSitePatterns PS00177 DNA topoisomerase II signature. 426 434 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Gene3D G3DSA:3.40.50.670 403 638 3.5E-111 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 SUPERFAMILY SSF56719 398 630 5.75E-93 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 SUPERFAMILY SSF55874 9 217 4.71E-73 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Pfam PF01751 Toprim domain 423 534 5.4E-19 T 13-10-2018 IPR006171 TOPRIM domain BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 SMART SM00387 34 178 4.8E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 9 638 0.0 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 SMART SM00433 38 631 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 567 627 1.8E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_0005 584ce63e62ace612d01c8d2530223ac3 638 Gene3D G3DSA:3.30.565.10 6 223 3.4E-92 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1168 0c44a8a869b0b63f345e016a48b718ba 380 Pfam PF12698 ABC-2 family transporter protein 16 373 6.7E-26 T 13-10-2018 BMD_1168 0c44a8a869b0b63f345e016a48b718ba 380 Gene3D G3DSA:3.40.1710.10 35 143 2.1E-7 T 13-10-2018 BMD_4416 d26986c0a517e3e05850b1b2a4bde4e0 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4416 d26986c0a517e3e05850b1b2a4bde4e0 240 Pfam PF00005 ABC transporter 17 165 1.1E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4416 d26986c0a517e3e05850b1b2a4bde4e0 240 Gene3D G3DSA:3.40.50.300 1 240 1.6E-80 T 13-10-2018 BMD_4416 d26986c0a517e3e05850b1b2a4bde4e0 240 PIRSF PIRSF039085 1 240 3.7E-113 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BMD_4416 d26986c0a517e3e05850b1b2a4bde4e0 240 SUPERFAMILY SSF52540 1 235 4.84E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4416 d26986c0a517e3e05850b1b2a4bde4e0 240 SMART SM00382 26 213 2.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5117 7c1a9f7859c2872fa18be5d7b0c17c69 294 SUPERFAMILY SSF53448 3 276 2.09E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_5117 7c1a9f7859c2872fa18be5d7b0c17c69 294 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 265 7.2E-120 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BMD_5117 7c1a9f7859c2872fa18be5d7b0c17c69 294 Gene3D G3DSA:3.90.550.10 1 293 1.3E-89 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_5117 7c1a9f7859c2872fa18be5d7b0c17c69 294 Pfam PF00483 Nucleotidyl transferase 5 266 1.0E-31 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 Gene3D G3DSA:2.30.170.50 1 66 1.5E-31 T 13-10-2018 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 PRINTS PR01249 Ribosomal protein L31 signature 30 45 6.6E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 PRINTS PR01249 Ribosomal protein L31 signature 2 19 6.6E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 PRINTS PR01249 Ribosomal protein L31 signature 45 63 6.6E-22 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 ProSitePatterns PS01143 Ribosomal protein L31 signature. 34 55 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 1.7E-30 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 Pfam PF01197 Ribosomal protein L31 1 64 3.0E-31 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 66 26.686 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5157 7ea507007afbd9694984d05d8f3ff852 66 SUPERFAMILY SSF143800 1 65 1.02E-25 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_3852 03965c25439d260249313652be6920c5 521 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 47 492 6.5E-165 T 13-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BMD_3852 03965c25439d260249313652be6920c5 521 SMART SM00640 63 481 8.0E-137 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 BMD_3852 03965c25439d260249313652be6920c5 521 Gene3D G3DSA:2.60.120.560 378 512 4.5E-28 T 13-10-2018 BMD_3852 03965c25439d260249313652be6920c5 521 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 63 364 8.2E-104 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BMD_3852 03965c25439d260249313652be6920c5 521 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 63 76 - T 13-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BMD_3852 03965c25439d260249313652be6920c5 521 Gene3D G3DSA:2.115.10.20 27 377 1.5E-115 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_3852 03965c25439d260249313652be6920c5 521 SUPERFAMILY SSF75005 54 365 1.49E-112 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_3852 03965c25439d260249313652be6920c5 521 SUPERFAMILY SSF49899 364 506 7.91E-30 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BMD_3852 03965c25439d260249313652be6920c5 521 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 367 506 3.1E-25 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal BMD_4626 ecd7f63b33b41d4f6ddccaf39bc9f33c 379 SUPERFAMILY SSF51713 2 369 3.01E-163 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BMD_4626 ecd7f63b33b41d4f6ddccaf39bc9f33c 379 Pfam PF01702 Queuine tRNA-ribosyltransferase 132 365 1.1E-92 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BMD_4626 ecd7f63b33b41d4f6ddccaf39bc9f33c 379 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 368 57.933 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BMD_4626 ecd7f63b33b41d4f6ddccaf39bc9f33c 379 Gene3D G3DSA:3.20.20.105 2 372 8.8E-172 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BMD_4626 ecd7f63b33b41d4f6ddccaf39bc9f33c 379 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 6 371 6.0E-176 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BMD_4626 ecd7f63b33b41d4f6ddccaf39bc9f33c 379 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 6 372 2.0E-186 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BMD_1098 4550aa466716fa0fe7f1296d77a94535 242 Gene3D G3DSA:1.20.1330.10 42 236 9.8E-76 T 13-10-2018 BMD_1098 4550aa466716fa0fe7f1296d77a94535 242 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 139 5.4E-44 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BMD_1098 4550aa466716fa0fe7f1296d77a94535 242 SUPERFAMILY SSF64518 1 239 3.4E-79 T 13-10-2018 BMD_1098 4550aa466716fa0fe7f1296d77a94535 242 PRINTS PR00207 Flagellin signature 74 93 2.3E-24 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BMD_1098 4550aa466716fa0fe7f1296d77a94535 242 PRINTS PR00207 Flagellin signature 109 132 2.3E-24 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BMD_1098 4550aa466716fa0fe7f1296d77a94535 242 PRINTS PR00207 Flagellin signature 35 52 2.3E-24 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BMD_1098 4550aa466716fa0fe7f1296d77a94535 242 Pfam PF00700 Bacterial flagellin C-terminal helical region 188 241 7.0E-16 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BMD_2201 1504fad47b93cdf94ab223dd4a113c69 170 SUPERFAMILY SSF55729 2 165 2.17E-44 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2201 1504fad47b93cdf94ab223dd4a113c69 170 Gene3D G3DSA:3.40.630.30 1 168 2.8E-52 T 13-10-2018 BMD_2201 1504fad47b93cdf94ab223dd4a113c69 170 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 6.2E-30 T 13-10-2018 IPR000182 GNAT domain BMD_3022 c2b9f8d391d57a53abb40ff60feca9d8 139 Gene3D G3DSA:3.10.580.10 1 139 5.6E-43 T 13-10-2018 BMD_3022 c2b9f8d391d57a53abb40ff60feca9d8 139 SUPERFAMILY SSF54631 1 130 3.03E-29 T 13-10-2018 BMD_3022 c2b9f8d391d57a53abb40ff60feca9d8 139 Pfam PF00571 CBS domain 96 129 9.3E-4 T 13-10-2018 IPR000644 CBS domain BMD_3022 c2b9f8d391d57a53abb40ff60feca9d8 139 Pfam PF00571 CBS domain 9 59 1.2E-12 T 13-10-2018 IPR000644 CBS domain BMD_3022 c2b9f8d391d57a53abb40ff60feca9d8 139 SMART SM00116 12 60 3.2E-6 T 13-10-2018 IPR000644 CBS domain BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 Gene3D G3DSA:3.30.700.10 9 67 7.4E-9 T 13-10-2018 BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 28 9.6E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 SUPERFAMILY SSF54523 9 84 1.57E-11 T 13-10-2018 BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 5.1E-10 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 5.1E-10 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 PIRSF PIRSF029928 1 100 2.7E-33 T 13-10-2018 IPR016940 ComG operon protein C GO:0030420 BMD_4479 448a0b171dc991d9facd3dd4f7f9fea0 103 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 28 1.3E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 5.2E-68 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 5.2E-68 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 5.2E-68 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 5.2E-68 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 5.2E-68 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 5.2E-68 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 Gene3D G3DSA:1.10.275.10 26 230 2.5E-194 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 Hamap MF_00006 Argininosuccinate lyase [argH]. 3 454 44.09 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 SUPERFAMILY SSF48557 4 456 5.18E-148 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 Gene3D G3DSA:1.10.40.30 361 433 2.5E-194 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 Pfam PF14698 Argininosuccinate lyase C-terminal 364 432 1.1E-24 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 6.7E-29 T 13-10-2018 IPR000362 Fumarate lyase family BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 6.7E-29 T 13-10-2018 IPR000362 Fumarate lyase family BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 6.7E-29 T 13-10-2018 IPR000362 Fumarate lyase family BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 6.7E-29 T 13-10-2018 IPR000362 Fumarate lyase family BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 TIGRFAM TIGR00838 argH: argininosuccinate lyase 4 456 1.8E-205 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 Gene3D G3DSA:1.20.200.10 120 449 2.5E-194 T 13-10-2018 BMD_4775 84de0378bb5b5aca01974101b71c21bd 462 Pfam PF00206 Lyase 7 301 2.4E-76 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal BMD_0446 b243293daa76a95c6c1913c6edafb818 75 Gene3D G3DSA:1.20.1260.10 8 75 3.1E-6 T 13-10-2018 IPR012347 Ferritin-like BMD_0446 b243293daa76a95c6c1913c6edafb818 75 Pfam PF11553 Protein of unknown function (DUF3231) 11 74 3.0E-16 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_0142 06274079f78247660a35799193303c37 66 Gene3D G3DSA:1.10.287.310 1 66 1.5E-30 T 13-10-2018 BMD_0142 06274079f78247660a35799193303c37 66 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 5.0E-24 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0142 06274079f78247660a35799193303c37 66 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.685 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0142 06274079f78247660a35799193303c37 66 SUPERFAMILY SSF46561 1 63 7.19E-24 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0142 06274079f78247660a35799193303c37 66 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 13-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0142 06274079f78247660a35799193303c37 66 Pfam PF00831 Ribosomal L29 protein 4 60 4.3E-26 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4094 651fef3f75d996e47745dd169fa43782 625 Pfam PF08676 MutL C terminal dimerisation domain 440 581 9.5E-48 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BMD_4094 651fef3f75d996e47745dd169fa43782 625 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 209 325 3.6E-36 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 BMD_4094 651fef3f75d996e47745dd169fa43782 625 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 2 621 27.333 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 BMD_4094 651fef3f75d996e47745dd169fa43782 625 Gene3D G3DSA:3.30.230.10 213 325 4.7E-32 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_4094 651fef3f75d996e47745dd169fa43782 625 Gene3D G3DSA:2.30.42.20 440 623 2.5E-65 T 13-10-2018 BMD_4094 651fef3f75d996e47745dd169fa43782 625 SUPERFAMILY SSF118116 435 623 3.53E-56 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily BMD_4094 651fef3f75d996e47745dd169fa43782 625 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 99 1.2E-10 T 13-10-2018 BMD_4094 651fef3f75d996e47745dd169fa43782 625 SMART SM00853 439 581 3.5E-55 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BMD_4094 651fef3f75d996e47745dd169fa43782 625 SMART SM01340 208 326 2.8E-53 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 BMD_4094 651fef3f75d996e47745dd169fa43782 625 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 3 306 1.2E-97 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 BMD_4094 651fef3f75d996e47745dd169fa43782 625 SUPERFAMILY SSF55874 4 213 1.18E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4094 651fef3f75d996e47745dd169fa43782 625 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site BMD_4094 651fef3f75d996e47745dd169fa43782 625 Gene3D G3DSA:3.30.565.10 1 212 6.8E-59 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4094 651fef3f75d996e47745dd169fa43782 625 Gene3D G3DSA:3.30.1370.100 481 574 2.5E-65 T 13-10-2018 BMD_4094 651fef3f75d996e47745dd169fa43782 625 SUPERFAMILY SSF54211 190 326 9.1E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_3552 69c3155121e217e7ffdc7a65c7aaff8c 391 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 2.8E-20 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 BMD_3552 69c3155121e217e7ffdc7a65c7aaff8c 391 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 190 390 4.5E-54 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 BMD_4497 194471a99da8b582589ac27ff06117c2 219 Pfam PF01895 PhoU domain 122 206 3.3E-20 T 13-10-2018 IPR026022 PhoU domain BMD_4497 194471a99da8b582589ac27ff06117c2 219 Pfam PF01895 PhoU domain 18 105 3.9E-20 T 13-10-2018 IPR026022 PhoU domain BMD_4497 194471a99da8b582589ac27ff06117c2 219 Gene3D G3DSA:1.20.58.220 3 219 7.8E-73 T 13-10-2018 IPR038078 PhoU-like domain superfamily BMD_4497 194471a99da8b582589ac27ff06117c2 219 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 6 214 6.1E-63 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BMD_4497 194471a99da8b582589ac27ff06117c2 219 SUPERFAMILY SSF109755 4 218 1.36E-63 T 13-10-2018 BMD_4497 194471a99da8b582589ac27ff06117c2 219 PIRSF PIRSF003107 1 219 1.2E-62 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 Pfam PF07497 Rho termination factor, RNA-binding domain 53 126 2.1E-31 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 157 361 9.5E-19 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 SMART SM00959 7 49 3.3E-17 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 Gene3D G3DSA:2.40.50.140 48 124 4.7E-29 T 13-10-2018 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 Gene3D G3DSA:1.10.720.10 1 47 4.0E-20 T 13-10-2018 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 SMART SM00357 54 119 7.8E-20 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 Gene3D G3DSA:3.40.50.300 131 419 8.2E-124 T 13-10-2018 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 Pfam PF07498 Rho termination factor, N-terminal domain 8 49 3.9E-16 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 SUPERFAMILY SSF50249 51 126 4.28E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 TIGRFAM TIGR00767 rho: transcription termination factor Rho 5 413 4.9E-204 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 SUPERFAMILY SSF52540 91 369 1.82E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 418 222.55 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 SMART SM00382 168 353 4.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5158 d217dc36be96f1bd6e9a3c7b61947c09 424 SUPERFAMILY SSF68912 4 49 3.61E-11 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily BMD_2467 1967f314436c49f446b06f6afa483834 263 Gene3D G3DSA:3.30.2040.10 122 234 1.2E-100 T 13-10-2018 BMD_2467 1967f314436c49f446b06f6afa483834 263 Gene3D G3DSA:3.40.1640.10 17 250 1.2E-100 T 13-10-2018 BMD_2467 1967f314436c49f446b06f6afa483834 263 Pfam PF07286 Protein of unknown function (DUF1445) 112 254 6.4E-69 T 13-10-2018 IPR009906 D-glutamate cyclase BMD_2467 1967f314436c49f446b06f6afa483834 263 PIRSF PIRSF029755 1 263 2.7E-129 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 BMD_2467 1967f314436c49f446b06f6afa483834 263 Hamap MF_01830 Putative hydro-lyase . 8 262 55.181 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 BMD_2467 1967f314436c49f446b06f6afa483834 263 SUPERFAMILY SSF160920 3 255 3.92E-118 T 13-10-2018 IPR038021 Putative hydro-lyase BMD_2104 8d464acfb696aebab8a9fd1706147c67 275 SUPERFAMILY SSF51735 3 155 1.02E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2104 8d464acfb696aebab8a9fd1706147c67 275 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 239 6.1E-7 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BMD_2104 8d464acfb696aebab8a9fd1706147c67 275 SUPERFAMILY SSF55347 131 250 4.41E-27 T 13-10-2018 BMD_2104 8d464acfb696aebab8a9fd1706147c67 275 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 123 6.6E-35 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_2104 8d464acfb696aebab8a9fd1706147c67 275 Gene3D G3DSA:3.30.360.10 134 261 1.3E-29 T 13-10-2018 BMD_2104 8d464acfb696aebab8a9fd1706147c67 275 Gene3D G3DSA:3.40.50.720 1 133 3.7E-48 T 13-10-2018 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 Pfam PF13377 Periplasmic binding protein-like domain 167 328 1.5E-39 T 13-10-2018 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 Gene3D G3DSA:3.40.50.2300 159 288 3.7E-87 T 13-10-2018 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 3.9E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 Gene3D G3DSA:3.40.50.2300 61 305 3.7E-87 T 13-10-2018 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 SMART SM00354 1 71 4.0E-34 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 Gene3D G3DSA:1.10.260.40 4 59 2.6E-23 T 13-10-2018 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 SUPERFAMILY SSF47413 1 58 2.34E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3624 7cabebe06ae9e061deec9daef6037914 333 SUPERFAMILY SSF53822 60 329 7.61E-92 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 13-10-2018 BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 SUPERFAMILY SSF47413 3 63 9.01E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 Gene3D G3DSA:1.10.260.40 3 63 3.2E-21 T 13-10-2018 BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 Gene3D G3DSA:3.40.50.2300 66 325 1.3E-74 T 13-10-2018 BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 Gene3D G3DSA:3.40.50.2300 166 330 1.3E-74 T 13-10-2018 BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 SUPERFAMILY SSF53822 65 334 3.7E-73 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 52 6.1E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 SMART SM00354 4 75 7.2E-32 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2972 571d8f16903ed5e9aa189898b56ec047 336 Pfam PF13377 Periplasmic binding protein-like domain 176 333 6.7E-30 T 13-10-2018 BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 Pfam PF06426 Serine acetyltransferase, N-terminal 4 35 1.3E-5 T 13-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 1.4E-4 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 151 3.8E-7 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 1.0E-78 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 Gene3D G3DSA:1.10.3130.10 1 66 3.6E-26 T 13-10-2018 BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 Gene3D G3DSA:2.160.10.10 67 181 1.7E-36 T 13-10-2018 BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 SUPERFAMILY SSF51161 3 168 2.5E-57 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_0112 44931fbfbe479e6682e183da5772cdcb 218 PIRSF PIRSF000441 1 216 1.2E-85 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BMD_3637 d2b65df77e13122a2597fb215527a69f 215 Gene3D G3DSA:3.40.630.30 20 153 5.4E-17 T 13-10-2018 BMD_3637 d2b65df77e13122a2597fb215527a69f 215 SUPERFAMILY SSF55729 2 138 1.8E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3637 d2b65df77e13122a2597fb215527a69f 215 Pfam PF00583 Acetyltransferase (GNAT) family 38 121 9.6E-10 T 13-10-2018 IPR000182 GNAT domain BMD_4257 db49fc243a058efe767af5a49aadcf34 259 SUPERFAMILY SSF88659 175 258 2.43E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4257 db49fc243a058efe767af5a49aadcf34 259 SUPERFAMILY SSF88659 114 190 4.05E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4257 db49fc243a058efe767af5a49aadcf34 259 Gene3D G3DSA:1.10.10.10 111 164 1.4E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4257 db49fc243a058efe767af5a49aadcf34 259 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 227 253 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 TIGRFAM TIGR02850 spore_sigG: RNA polymerase sigma-G factor 4 257 1.9E-155 T 13-10-2018 IPR014212 RNA polymerase sigma-G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 PRINTS PR00046 Major sigma-70 factor signature 227 242 2.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 PRINTS PR00046 Major sigma-70 factor signature 90 98 2.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 PRINTS PR00046 Major sigma-70 factor signature 242 253 2.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 PRINTS PR00046 Major sigma-70 factor signature 66 79 2.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 PRINTS PR00046 Major sigma-70 factor signature 210 222 2.7E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 Pfam PF04542 Sigma-70 region 2 42 110 3.0E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 SUPERFAMILY SSF88946 6 110 1.83E-33 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 Pfam PF04545 Sigma-70, region 4 207 253 6.8E-13 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 PIRSF PIRSF000770 15 259 8.1E-33 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 66 79 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 Gene3D G3DSA:1.10.601.10 11 110 5.7E-27 T 13-10-2018 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 38 256 5.2E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 37 257 1.7E-82 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4257 db49fc243a058efe767af5a49aadcf34 259 Gene3D G3DSA:1.10.10.10 185 259 7.8E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4257 db49fc243a058efe767af5a49aadcf34 259 Pfam PF04539 Sigma-70 region 3 124 173 1.8E-6 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 PIRSF PIRSF016578 4 365 1.0E-20 T 13-10-2018 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 374 3.5E-54 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 SUPERFAMILY SSF47203 226 376 3.38E-62 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 SUPERFAMILY SSF56645 3 240 8.12E-94 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 Gene3D G3DSA:1.10.540.10 1 120 9.4E-47 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 4.0E-43 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 215 1.8E-27 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 Gene3D G3DSA:2.40.110.10 121 232 1.2E-45 T 13-10-2018 BMD_5168 456631e8a273df9901b2f06ec91d671e 377 Gene3D G3DSA:1.20.140.10 233 377 1.5E-58 T 13-10-2018 BMD_2163 0ee8e8f9e69502e7481873b3514d8355 273 SUPERFAMILY SSF52402 4 272 1.38E-81 T 13-10-2018 BMD_2163 0ee8e8f9e69502e7481873b3514d8355 273 TIGRFAM TIGR00552 nadE: NAD+ synthetase 20 273 6.2E-80 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 BMD_2163 0ee8e8f9e69502e7481873b3514d8355 273 Pfam PF02540 NAD synthase 24 264 6.1E-75 T 13-10-2018 IPR022310 NAD/GMP synthase BMD_2163 0ee8e8f9e69502e7481873b3514d8355 273 Gene3D G3DSA:3.40.50.620 2 273 2.3E-86 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_2163 0ee8e8f9e69502e7481873b3514d8355 273 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 19 267 49.7 T 13-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 BMD_4266 ad5e749a6f83ef696cd8002b5283d818 324 ProSitePatterns PS01348 MraY family signature 2. 168 179 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_4266 ad5e749a6f83ef696cd8002b5283d818 324 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 17 324 1.7E-121 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_4266 ad5e749a6f83ef696cd8002b5283d818 324 ProSitePatterns PS01347 MraY family signature 1. 48 60 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_4266 ad5e749a6f83ef696cd8002b5283d818 324 Pfam PF00953 Glycosyl transferase family 4 83 248 1.2E-40 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 BMD_4266 ad5e749a6f83ef696cd8002b5283d818 324 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 48 60 1.4E-5 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_4266 ad5e749a6f83ef696cd8002b5283d818 324 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 5 322 25.114 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_4866 57a0d291b28189f68411ab628980f116 152 SUPERFAMILY SSF52218 1 146 6.44E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_4866 57a0d291b28189f68411ab628980f116 152 Pfam PF00258 Flavodoxin 7 134 5.4E-28 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BMD_4866 57a0d291b28189f68411ab628980f116 152 TIGRFAM TIGR01753 flav_short: flavodoxin 4 143 9.8E-46 T 13-10-2018 IPR010087 Flavodoxin, short chain GO:0010181 BMD_4866 57a0d291b28189f68411ab628980f116 152 Gene3D G3DSA:3.40.50.360 1 145 2.0E-36 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3787 13cd2ae1a6c6a4ec665fe6d450b46e76 194 Pfam PF14172 Domain of unknown function (DUF4309) 54 190 2.2E-30 T 13-10-2018 IPR025453 Protein of unknown function DUF4309 BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 SUPERFAMILY SSF52540 3 227 2.04E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 Pfam PF00005 ABC transporter 275 429 4.4E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 SUPERFAMILY SSF52540 256 489 2.34E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 SMART SM00382 29 218 2.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 Gene3D G3DSA:3.40.50.300 1 236 4.9E-56 T 13-10-2018 BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 Gene3D G3DSA:3.40.50.300 252 494 9.6E-41 T 13-10-2018 BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 Pfam PF00005 ABC transporter 21 169 1.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4117 27748d267f6c7b28a5d98c285d9022cd 509 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_3731 d788f4d99a5ce09d605162e81e33bc31 186 Gene3D G3DSA:3.40.1580.10 6 172 1.4E-18 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily BMD_3731 d788f4d99a5ce09d605162e81e33bc31 186 SMART SM00860 24 167 9.5E-7 T 13-10-2018 IPR018958 Knr4/Smi1-like domain BMD_3731 d788f4d99a5ce09d605162e81e33bc31 186 Pfam PF14568 SMI1-KNR4 cell-wall 27 165 7.5E-12 T 13-10-2018 BMD_3731 d788f4d99a5ce09d605162e81e33bc31 186 SUPERFAMILY SSF160631 23 169 1.57E-15 T 13-10-2018 BMD_1995 87128998c46c0477850a974559ec87b9 399 PRINTS PR00465 E-class P450 group IV signature 287 301 2.7E-7 T 13-10-2018 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1995 87128998c46c0477850a974559ec87b9 399 PRINTS PR00465 E-class P450 group IV signature 303 321 2.7E-7 T 13-10-2018 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1995 87128998c46c0477850a974559ec87b9 399 PRINTS PR00465 E-class P450 group IV signature 254 270 2.7E-7 T 13-10-2018 IPR002403 Cytochrome P450, E-class, group IV GO:0004497|GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1995 87128998c46c0477850a974559ec87b9 399 Pfam PF00067 Cytochrome P450 6 337 2.5E-30 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1995 87128998c46c0477850a974559ec87b9 399 SUPERFAMILY SSF48264 5 393 2.1E-49 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1995 87128998c46c0477850a974559ec87b9 399 Gene3D G3DSA:1.10.630.10 1 396 1.9E-58 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_4059 5c65e76c6ee2b9380bd61c14efd09e54 161 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 4 150 5.9E-30 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase BMD_4059 5c65e76c6ee2b9380bd61c14efd09e54 161 PIRSF PIRSF030780 2 157 3.1E-16 T 13-10-2018 IPR016956 Inner membrane protein YdjM BMD_1404 8a8e3f32c970d68189371df07c156caf 67 SUPERFAMILY SSF50249 3 66 7.0E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_1404 8a8e3f32c970d68189371df07c156caf 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 34 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_1404 8a8e3f32c970d68189371df07c156caf 67 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 8.5E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1404 8a8e3f32c970d68189371df07c156caf 67 Gene3D G3DSA:2.40.50.140 2 66 9.8E-30 T 13-10-2018 BMD_1404 8a8e3f32c970d68189371df07c156caf 67 PRINTS PR00050 Cold shock protein signature 5 20 4.9E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1404 8a8e3f32c970d68189371df07c156caf 67 PRINTS PR00050 Cold shock protein signature 40 58 4.9E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1404 8a8e3f32c970d68189371df07c156caf 67 PRINTS PR00050 Cold shock protein signature 25 34 4.9E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1404 8a8e3f32c970d68189371df07c156caf 67 SMART SM00357 4 67 2.8E-32 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_1404 8a8e3f32c970d68189371df07c156caf 67 PIRSF PIRSF002599 1 67 3.0E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 3.5E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 3.5E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 3.5E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 SMART SM00421 144 201 3.6E-27 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 SUPERFAMILY SSF52172 1 134 4.7E-34 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1419 63d1a39529414f4c9b0e351697b45339 208 Gene3D G3DSA:3.40.50.12740 2 207 5.6E-75 T 13-10-2018 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 SUPERFAMILY SSF46894 138 206 5.78E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 Pfam PF00072 Response regulator receiver domain 4 115 2.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 8.6E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1419 63d1a39529414f4c9b0e351697b45339 208 SMART SM00448 2 115 6.2E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0173 10c1d4c86e5e9d42a903000b5e5e7205 208 PIRSF PIRSF029886 3 201 1.9E-75 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 BMD_0173 10c1d4c86e5e9d42a903000b5e5e7205 208 SMART SM01251 19 198 3.4E-107 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 BMD_0173 10c1d4c86e5e9d42a903000b5e5e7205 208 Pfam PF14089 KinB-signalling pathway activation in sporulation 19 197 5.6E-77 T 13-10-2018 IPR024164 KinB-signalling pathway activation protein GO:0045881 BMD_0497 d298333eb39a0d01524387c806e2106b 262 Pfam PF04962 KduI/IolB family 10 251 1.3E-61 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 BMD_0497 d298333eb39a0d01524387c806e2106b 262 PIRSF PIRSF036628 1 257 2.2E-84 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 BMD_0497 d298333eb39a0d01524387c806e2106b 262 SUPERFAMILY SSF51182 3 239 7.86E-45 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_0497 d298333eb39a0d01524387c806e2106b 262 Gene3D G3DSA:2.60.120.10 15 118 3.6E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_0497 d298333eb39a0d01524387c806e2106b 262 Gene3D G3DSA:2.60.120.10 119 257 3.4E-44 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 Gene3D G3DSA:3.30.70.580 65 223 3.8E-54 T 13-10-2018 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 SMART SM00363 4 64 1.9E-13 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 Gene3D G3DSA:3.30.70.1560 129 202 3.8E-54 T 13-10-2018 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 SUPERFAMILY SSF55120 61 225 4.8E-40 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 Pfam PF01479 S4 domain 5 49 2.4E-15 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 68 221 2.8E-47 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 Pfam PF00849 RNA pseudouridylate synthase 64 189 1.4E-14 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 SUPERFAMILY SSF55174 4 77 2.02E-14 T 13-10-2018 BMD_0507 b279e0b301b1db37d1f314258cca4d12 238 Gene3D G3DSA:3.10.290.10 3 57 1.0E-21 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_1952 3129c66aa267efe3c48897034bdc8ed3 359 SUPERFAMILY SSF53383 21 354 4.52E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1952 3129c66aa267efe3c48897034bdc8ed3 359 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 212 225 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BMD_1952 3129c66aa267efe3c48897034bdc8ed3 359 Pfam PF00155 Aminotransferase class I and II 49 352 1.0E-49 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_1952 3129c66aa267efe3c48897034bdc8ed3 359 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 6 352 1.3E-89 T 13-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 BMD_1952 3129c66aa267efe3c48897034bdc8ed3 359 Gene3D G3DSA:3.40.640.10 37 260 7.8E-108 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1952 3129c66aa267efe3c48897034bdc8ed3 359 Gene3D G3DSA:3.90.1150.10 25 352 7.8E-108 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 Gene3D G3DSA:2.10.109.10 61 184 5.7E-37 T 13-10-2018 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 ProSitePatterns PS00761 Signal peptidases I signature 3. 141 154 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 ProSitePatterns PS00501 Signal peptidases I serine active site. 40 47 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 136 155 3.0E-22 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 82 94 3.0E-22 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 31 47 3.0E-22 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 ProSitePatterns PS00760 Signal peptidases I lysine active site. 84 96 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 BMD_3052 c7198cab02807c1963a4541d859d1e36 184 Pfam PF00717 Peptidase S24-like 38 106 1.7E-20 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BMD_3052 c7198cab02807c1963a4541d859d1e36 184 SUPERFAMILY SSF51306 29 181 3.14E-49 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BMD_3052 c7198cab02807c1963a4541d859d1e36 184 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 15 177 4.0E-55 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_1954 4214c8a0c14cb853203f03525a203e29 257 Pfam PF02654 Cobalamin-5-phosphate synthase 12 244 2.5E-46 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BMD_1954 4214c8a0c14cb853203f03525a203e29 257 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 257 33.686 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BMD_1954 4214c8a0c14cb853203f03525a203e29 257 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 8 242 2.0E-34 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BMD_2016 c09df0b0eb13e86033e24140d1f976a1 273 SUPERFAMILY SSF56784 1 267 5.9E-75 T 13-10-2018 IPR036412 HAD-like superfamily BMD_2016 c09df0b0eb13e86033e24140d1f976a1 273 Gene3D G3DSA:3.40.50.1000 4 263 2.2E-84 T 13-10-2018 IPR023214 HAD superfamily BMD_2016 c09df0b0eb13e86033e24140d1f976a1 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 13-10-2018 BMD_2016 c09df0b0eb13e86033e24140d1f976a1 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 261 7.4E-65 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_2016 c09df0b0eb13e86033e24140d1f976a1 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 235 3.4E-28 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_2016 c09df0b0eb13e86033e24140d1f976a1 273 Gene3D G3DSA:3.30.1240.10 87 191 2.2E-84 T 13-10-2018 BMD_2016 c09df0b0eb13e86033e24140d1f976a1 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 261 1.4E-66 T 13-10-2018 BMD_4075 4fb52abcaa5631279cfcfe42a1c08a4b 232 SMART SM00857 13 159 5.3E-31 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BMD_4075 4fb52abcaa5631279cfcfe42a1c08a4b 232 Gene3D G3DSA:3.40.50.1390 8 166 1.7E-26 T 13-10-2018 BMD_4075 4fb52abcaa5631279cfcfe42a1c08a4b 232 Pfam PF00239 Resolvase, N terminal domain 13 157 3.3E-25 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BMD_4075 4fb52abcaa5631279cfcfe42a1c08a4b 232 SUPERFAMILY SSF53041 13 158 1.96E-23 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 BMD_4611 9c08ee2d2667a14c34fe672411dd397c 254 Gene3D G3DSA:3.40.50.720 1 253 2.7E-80 T 13-10-2018 BMD_4611 9c08ee2d2667a14c34fe672411dd397c 254 SUPERFAMILY SSF69572 4 244 6.54E-62 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BMD_4611 9c08ee2d2667a14c34fe672411dd397c 254 Pfam PF00899 ThiF family 6 158 7.6E-38 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SUPERFAMILY SSF48452 126 247 6.45E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Gene3D G3DSA:1.25.40.10 504 859 1.1E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Gene3D G3DSA:1.25.40.10 1017 1091 5.7E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SUPERFAMILY SSF48452 619 983 6.95E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 1047 1080 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 599 632 150.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 736 769 0.49 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 190 223 57.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 667 700 160.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 1281 1314 0.064 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 1012 1046 0.51 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 880 913 0.92 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 1247 1280 340.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 633 666 20.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 565 598 0.23 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 914 946 0.048 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SMART SM00028 701 735 180.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SUPERFAMILY SSF48452 520 629 1.02E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Pfam PF13529 Peptidase_C39 like family 316 421 1.4E-7 T 13-10-2018 IPR039564 Peptidase C39-like BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Gene3D G3DSA:3.90.70.10 319 455 4.8E-10 T 13-10-2018 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Gene3D G3DSA:1.25.40.10 1297 1392 1.8E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Gene3D G3DSA:1.25.40.10 22 284 2.1E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Pfam PF13181 Tetratricopeptide repeat 916 945 8.8E-7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Pfam PF13181 Tetratricopeptide repeat 568 595 0.099 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Pfam PF14559 Tetratricopeptide repeat 1027 1087 3.5E-9 T 13-10-2018 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SUPERFAMILY SSF48452 1162 1344 3.79E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Gene3D G3DSA:1.25.40.10 1158 1296 1.7E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Gene3D G3DSA:1.25.40.10 863 995 1.1E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Pfam PF13432 Tetratricopeptide repeat 638 686 2.6E-7 T 13-10-2018 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 Pfam PF13432 Tetratricopeptide repeat 742 798 3.4E-4 T 13-10-2018 BMD_1453 b7bece34e92abe481cf5934a6b790eea 1401 SUPERFAMILY SSF48452 1014 1082 6.42E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SMART SM00388 645 713 2.9E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF03707 Bacterial signalling protein N terminal repeat 117 167 3.6E-10 T 13-10-2018 IPR005330 MHYT domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF03707 Bacterial signalling protein N terminal repeat 183 240 1.7E-4 T 13-10-2018 IPR005330 MHYT domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF03707 Bacterial signalling protein N terminal repeat 58 106 5.5E-10 T 13-10-2018 IPR005330 MHYT domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF13188 PAS domain 499 545 0.005 T 13-10-2018 IPR000014 PAS domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SUPERFAMILY SSF52172 892 1010 4.55E-26 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SMART SM00448 892 1006 2.4E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SUPERFAMILY SSF55785 361 484 1.92E-8 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SUPERFAMILY SSF55874 702 871 7.2E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 761 866 1.5E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF00512 His Kinase A (phospho-acceptor) domain 645 713 1.8E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SUPERFAMILY SSF55785 242 362 2.79E-16 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SMART SM00387 760 869 4.6E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF00072 Response regulator receiver domain 894 1005 3.6E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Gene3D G3DSA:1.10.287.130 634 711 7.4E-26 T 13-10-2018 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SMART SM00086 577 618 39.0 T 13-10-2018 IPR001610 PAC motif BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SMART SM00086 323 364 3.5 T 13-10-2018 IPR001610 PAC motif BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SUPERFAMILY SSF55785 483 616 1.12E-15 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 829 847 4.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 797 811 4.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 815 825 4.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 PRINTS PR00344 Bacterial sensor protein C-terminal signature 853 866 4.6E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Gene3D G3DSA:3.30.450.20 485 624 4.2E-16 T 13-10-2018 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF13426 PAS domain 267 363 1.6E-6 T 13-10-2018 IPR000014 PAS domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Gene3D G3DSA:3.30.450.20 391 484 2.8E-7 T 13-10-2018 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Gene3D G3DSA:3.40.50.12740 890 1012 3.9E-28 T 13-10-2018 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Gene3D G3DSA:3.30.565.10 712 868 3.9E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SUPERFAMILY SSF47384 631 714 4.32E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Gene3D G3DSA:3.30.450.20 241 390 1.7E-19 T 13-10-2018 BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SMART SM00091 498 568 0.0036 T 13-10-2018 IPR000014 PAS domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 SMART SM00091 254 320 0.0062 T 13-10-2018 IPR000014 PAS domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 495 625 8.8E-7 T 13-10-2018 IPR000014 PAS domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 252 371 1.2E-17 T 13-10-2018 IPR000014 PAS domain BMD_1207 08bfda7aaf3f24a23311baba8bf7297f 1012 Pfam PF08448 PAS fold 412 487 5.4E-5 T 13-10-2018 IPR013656 PAS fold-4 BMD_1157 1db45f887a95739ad3cd620fdbd7f2e4 241 Pfam PF13580 SIS domain 5 139 2.1E-41 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_1157 1db45f887a95739ad3cd620fdbd7f2e4 241 Gene3D G3DSA:3.40.50.10490 2 236 1.4E-80 T 13-10-2018 BMD_1157 1db45f887a95739ad3cd620fdbd7f2e4 241 Hamap MF_01240 UPF0309 protein . 1 241 38.291 T 13-10-2018 IPR022951 Uncharacterised protein family UPF0309 BMD_1157 1db45f887a95739ad3cd620fdbd7f2e4 241 SUPERFAMILY SSF53697 6 171 3.64E-23 T 13-10-2018 BMD_5151 cc7ee384adfb9982b5731b85d736ccf9 346 PIRSF PIRSF004930 1 346 3.9E-131 T 13-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 BMD_5151 cc7ee384adfb9982b5731b85d736ccf9 346 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 19 213 2.7E-65 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 BMD_5151 cc7ee384adfb9982b5731b85d736ccf9 346 Pfam PF01300 Telomere recombination 27 202 1.6E-56 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 BMD_5151 cc7ee384adfb9982b5731b85d736ccf9 346 SUPERFAMILY SSF55821 20 215 5.8E-67 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BMD_5151 cc7ee384adfb9982b5731b85d736ccf9 346 Gene3D G3DSA:3.90.870.10 3 218 1.6E-84 T 13-10-2018 BMD_5151 cc7ee384adfb9982b5731b85d736ccf9 346 Gene3D G3DSA:3.40.50.11030 221 346 9.3E-42 T 13-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily BMD_5151 cc7ee384adfb9982b5731b85d736ccf9 346 Pfam PF03481 Putative GTP-binding controlling metal-binding 204 340 1.7E-26 T 13-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 Pfam PF01037 Lrp/AsnC ligand binding domain 74 118 2.4E-12 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 SUPERFAMILY SSF54909 63 133 5.77E-15 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 Gene3D G3DSA:1.10.10.10 1 52 1.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 SMART SM00344 1 105 5.9E-33 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 Gene3D G3DSA:3.30.70.920 53 134 1.5E-18 T 13-10-2018 BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 1.4E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 SUPERFAMILY SSF46785 1 58 4.32E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 7.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 7.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_1671 ab8f422e93d1fb827477bcf431764d48 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 7.1E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 PIRSF PIRSF000538 1 496 8.3E-168 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 TIGRFAM TIGR01312 XylB: xylulokinase 5 484 2.2E-191 T 13-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 SUPERFAMILY SSF53067 2 249 2.32E-79 T 13-10-2018 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 Gene3D G3DSA:3.30.420.40 249 491 1.0E-77 T 13-10-2018 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 247 1.6E-74 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 SUPERFAMILY SSF53067 249 489 4.09E-70 T 13-10-2018 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 257 442 2.9E-36 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 355 375 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_1859 c2604cc1630aab3cc42e48e1405a04db 500 Gene3D G3DSA:3.30.420.40 1 239 2.7E-82 T 13-10-2018 BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 Pfam PF00210 Ferritin-like domain 8 146 2.4E-32 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 SUPERFAMILY SSF47240 6 145 4.2E-46 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 PIRSF PIRSF005900 2 146 1.4E-47 T 13-10-2018 IPR002177 DNA-binding protein Dps BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 Gene3D G3DSA:1.20.1260.10 2 146 3.2E-53 T 13-10-2018 IPR012347 Ferritin-like BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 122 140 3.4E-14 T 13-10-2018 IPR002177 DNA-binding protein Dps BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 3.4E-14 T 13-10-2018 IPR002177 DNA-binding protein Dps BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 27 43 3.4E-14 T 13-10-2018 IPR002177 DNA-binding protein Dps BMD_4857 d82da3bfdd95d067c9e6d75edf1eb88e 146 ProSitePatterns PS00818 Dps protein family signature 1. 27 43 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 BMD_0252 12c1c2357f2b7f43704fad5d146fefc8 149 Pfam PF00583 Acetyltransferase (GNAT) family 16 125 2.3E-19 T 13-10-2018 IPR000182 GNAT domain BMD_0252 12c1c2357f2b7f43704fad5d146fefc8 149 Gene3D G3DSA:3.40.630.30 6 149 7.9E-45 T 13-10-2018 BMD_0252 12c1c2357f2b7f43704fad5d146fefc8 149 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 14 145 5.2E-46 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 BMD_0252 12c1c2357f2b7f43704fad5d146fefc8 149 SUPERFAMILY SSF55729 5 149 6.06E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3191 d267b0f0a21ae6b306da8230822a9e17 283 Pfam PF05569 BlaR1 peptidase M56 62 246 8.3E-18 T 13-10-2018 IPR008756 Peptidase M56 BMD_3191 d267b0f0a21ae6b306da8230822a9e17 283 Gene3D G3DSA:3.30.2010.10 80 171 5.8E-10 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 151 171 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 208 229 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 286 305 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 325 343 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 81 100 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 16 34 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 105 121 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 PRINTS PR00681 Ribosomal protein S1 signature 122 139 3.3E-53 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Gene3D G3DSA:2.40.50.140 95 173 4.5E-13 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SMART SM00316 186 256 2.8E-29 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SMART SM00316 271 342 1.4E-24 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SMART SM00316 100 167 1.2E-11 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SMART SM00316 14 84 3.6E-16 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SUPERFAMILY SSF50249 252 348 4.26E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Gene3D G3DSA:2.40.50.140 267 351 2.2E-27 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Gene3D G3DSA:2.40.50.140 183 265 1.2E-29 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Gene3D G3DSA:2.40.50.140 3 94 3.0E-17 T 13-10-2018 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Pfam PF00575 S1 RNA binding domain 13 77 1.0E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Pfam PF00575 S1 RNA binding domain 270 342 5.0E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Pfam PF00575 S1 RNA binding domain 99 167 2.8E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 Pfam PF00575 S1 RNA binding domain 185 256 6.8E-25 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SUPERFAMILY SSF50249 8 109 2.06E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SUPERFAMILY SSF50249 185 273 1.66E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4330 85358a9ad5f559f8c7b70b527352e7cb 378 SUPERFAMILY SSF50249 87 171 1.52E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_3931 f8d72bb2fca4418d4fcfb01b7ba107cf 117 Pfam PF07883 Cupin domain 33 100 3.3E-12 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_3931 f8d72bb2fca4418d4fcfb01b7ba107cf 117 SUPERFAMILY SSF51182 9 103 1.41E-17 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_3931 f8d72bb2fca4418d4fcfb01b7ba107cf 117 Gene3D G3DSA:2.60.120.10 19 112 2.1E-15 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_2466 d005b4c87a351c772ad23cdf052cd5ea 251 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 15 233 2.7E-79 T 13-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BMD_2466 d005b4c87a351c772ad23cdf052cd5ea 251 SUPERFAMILY SSF50891 112 241 8.72E-49 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_2466 d005b4c87a351c772ad23cdf052cd5ea 251 SMART SM00796 10 225 1.1E-96 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BMD_2466 d005b4c87a351c772ad23cdf052cd5ea 251 Gene3D G3DSA:3.30.1360.40 6 108 1.9E-26 T 13-10-2018 BMD_2466 d005b4c87a351c772ad23cdf052cd5ea 251 SUPERFAMILY SSF160467 12 116 1.96E-13 T 13-10-2018 BMD_2466 d005b4c87a351c772ad23cdf052cd5ea 251 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 12 225 2.3E-74 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BMD_2466 d005b4c87a351c772ad23cdf052cd5ea 251 Gene3D G3DSA:2.40.100.10 110 250 1.1E-61 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 Gene3D G3DSA:2.60.260.20 1 73 4.9E-23 T 13-10-2018 BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 Pfam PF02814 UreE urease accessory protein, N-terminal domain 16 69 3.3E-17 T 13-10-2018 IPR004029 UreE urease accessory, N-terminal BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 SMART SM00988 6 69 2.6E-16 T 13-10-2018 IPR004029 UreE urease accessory, N-terminal BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 PIRSF PIRSF036402 1 148 4.9E-46 T 13-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 SUPERFAMILY SSF69287 1 73 8.11E-21 T 13-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 Gene3D G3DSA:3.30.70.790 75 147 3.3E-29 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 SUPERFAMILY SSF69737 76 141 6.8E-17 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 Pfam PF05194 UreE urease accessory protein, C-terminal domain 77 138 2.3E-8 T 13-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 BMD_2988 a38262e75d39cef02e0735bf631bcb29 148 Hamap MF_00822 Urease accessory protein UreE [ureE]. 1 147 23.362 T 13-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Gene3D G3DSA:1.10.1030.10 402 546 5.5E-43 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1057 13.178 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 2.1E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 2.1E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 2.1E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 2.1E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.1E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.1E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 2.1E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Gene3D G3DSA:3.40.50.1380 931 1066 3.2E-36 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 702 716 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SMART SM01209 674 836 0.0067 T 13-10-2018 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SUPERFAMILY SSF52440 1 127 2.59E-50 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Gene3D G3DSA:3.40.50.20 547 655 1.8E-46 T 13-10-2018 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 540 9.5E-39 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 830 837 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Pfam PF02142 MGS-like domain 951 1036 4.5E-18 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SMART SM01096 420 540 2.3E-62 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SUPERFAMILY SSF56059 666 927 3.71E-101 T 13-10-2018 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 333 1.7E-80 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 666 867 5.5E-39 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1047 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Gene3D G3DSA:3.30.470.20 120 401 9.2E-125 T 13-10-2018 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Gene3D G3DSA:3.40.50.20 1 116 9.8E-49 T 13-10-2018 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Gene3D G3DSA:3.30.470.20 659 929 2.3E-106 T 13-10-2018 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SUPERFAMILY SSF56059 128 399 2.12E-108 T 13-10-2018 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SMART SM00851 949 1036 3.1E-25 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SUPERFAMILY SSF52440 549 668 3.74E-48 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SUPERFAMILY SSF48108 395 546 2.09E-48 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1064 13.477 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4240 020a7b63a59ad23cbcc6557ae4f319a1 1070 SUPERFAMILY SSF52335 929 1051 6.93E-31 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BMD_0380 609f8b5d075d010ee8b4acce3e11ec7c 162 Gene3D G3DSA:2.40.128.20 1 161 6.1E-83 T 13-10-2018 IPR012674 Calycin BMD_0380 609f8b5d075d010ee8b4acce3e11ec7c 162 ProDom PD022010 DECARBOXYLASE ACID PHENOLIC P-COUMARIC LYASE 4.1.1.- PAD PADC FERULATE PROBABLE 1 161 5.0E-83 T 13-10-2018 IPR008729 Phenolic acid decarboxylase GO:0016831 BMD_0380 609f8b5d075d010ee8b4acce3e11ec7c 162 SUPERFAMILY SSF50814 2 161 2.17E-76 T 13-10-2018 IPR012674 Calycin BMD_0380 609f8b5d075d010ee8b4acce3e11ec7c 162 Pfam PF05870 Phenolic acid decarboxylase (PAD) 1 158 1.9E-82 T 13-10-2018 IPR008729 Phenolic acid decarboxylase GO:0016831 BMD_0380 609f8b5d075d010ee8b4acce3e11ec7c 162 PIRSF PIRSF011561 1 162 8.8E-96 T 13-10-2018 IPR008729 Phenolic acid decarboxylase GO:0016831 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 Gene3D G3DSA:1.20.140.10 248 407 7.6E-40 T 13-10-2018 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 SUPERFAMILY SSF47203 245 402 7.25E-45 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 10 130 3.3E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 Gene3D G3DSA:1.10.540.10 1 132 2.9E-55 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 229 1.5E-20 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 Gene3D G3DSA:2.40.110.10 133 247 1.5E-49 T 13-10-2018 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 SUPERFAMILY SSF56645 3 260 1.44E-71 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_2315 e81213e3c31c1d977fec4f2f36329675 414 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 395 2.0E-35 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BMD_0250 e4390259c0188d5269c21ac0a1f0f647 156 SUPERFAMILY SSF52540 28 127 1.66E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0250 e4390259c0188d5269c21ac0a1f0f647 156 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 12 136 1.0E-40 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BMD_0250 e4390259c0188d5269c21ac0a1f0f647 156 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 14 142 3.8E-46 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BMD_0250 e4390259c0188d5269c21ac0a1f0f647 156 Gene3D G3DSA:3.40.50.300 5 154 5.2E-44 T 13-10-2018 BMD_0400 b3b8c7eefef83e4342be8513d8cac1ac 51 Pfam PF08176 Small acid-soluble spore protein K family 1 47 6.9E-30 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 BMD_0400 b3b8c7eefef83e4342be8513d8cac1ac 51 TIGRFAM TIGR03091 SASP_sspK: small, acid-soluble spore protein K 16 47 1.2E-23 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 BMD_0400 b3b8c7eefef83e4342be8513d8cac1ac 51 Hamap MF_01504 Small, acid-soluble spore protein K [sspK]. 1 49 19.081 T 13-10-2018 IPR012611 Small acid-soluble spore protein, SspK GO:0030436|GO:0042601 BMD_0231 5e944db602f25248091012d06c3923bd 724 SUPERFAMILY SSF50249 635 719 2.76E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0231 5e944db602f25248091012d06c3923bd 724 Gene3D G3DSA:2.40.50.140 635 721 1.5E-22 T 13-10-2018 BMD_0231 5e944db602f25248091012d06c3923bd 724 SUPERFAMILY SSF53098 319 466 6.83E-50 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_0231 5e944db602f25248091012d06c3923bd 724 SUPERFAMILY SSF47781 557 632 5.11E-15 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_0231 5e944db602f25248091012d06c3923bd 724 SUPERFAMILY SSF47781 467 553 1.33E-27 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_0231 5e944db602f25248091012d06c3923bd 724 Pfam PF16921 Tex protein YqgF-like domain 323 448 4.4E-57 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain BMD_0231 5e944db602f25248091012d06c3923bd 724 SMART SM00732 323 421 1.8E-35 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 BMD_0231 5e944db602f25248091012d06c3923bd 724 SMART SM00316 649 720 1.9E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_0231 5e944db602f25248091012d06c3923bd 724 Gene3D G3DSA:1.10.150.310 496 630 1.0E-48 T 13-10-2018 BMD_0231 5e944db602f25248091012d06c3923bd 724 Gene3D G3DSA:1.10.3500.10 118 494 4.9E-157 T 13-10-2018 IPR023323 Tex-like domain superfamily BMD_0231 5e944db602f25248091012d06c3923bd 724 SUPERFAMILY SSF158832 8 318 5.36E-117 T 13-10-2018 BMD_0231 5e944db602f25248091012d06c3923bd 724 Gene3D G3DSA:3.30.420.140 322 448 4.9E-157 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 BMD_0231 5e944db602f25248091012d06c3923bd 724 Pfam PF00575 S1 RNA binding domain 649 719 2.7E-16 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_0231 5e944db602f25248091012d06c3923bd 724 Pfam PF12836 Helix-hairpin-helix motif 488 552 1.8E-28 T 13-10-2018 BMD_0231 5e944db602f25248091012d06c3923bd 724 Pfam PF09371 Tex-like protein N-terminal domain 15 198 1.3E-71 T 13-10-2018 IPR018974 Tex-like protein, N-terminal BMD_0231 5e944db602f25248091012d06c3923bd 724 Gene3D G3DSA:1.10.10.650 3 115 1.3E-39 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily BMD_0487 a11eeea454cbd78d92511d1354d30978 70 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 44 58 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_0487 a11eeea454cbd78d92511d1354d30978 70 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 11 65 6.1E-22 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_0487 a11eeea454cbd78d92511d1354d30978 70 Gene3D G3DSA:1.10.8.910 11 69 7.6E-31 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_0487 a11eeea454cbd78d92511d1354d30978 70 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 26 35 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 SUPERFAMILY SSF47384 114 196 2.75E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 SMART SM00388 129 196 5.8E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 SUPERFAMILY SSF158472 70 118 4.97E-8 T 13-10-2018 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 Gene3D G3DSA:1.10.287.130 125 199 5.7E-19 T 13-10-2018 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 Pfam PF00672 HAMP domain 69 117 3.6E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 Gene3D G3DSA:1.20.1480.50 32 124 7.6E-10 T 13-10-2018 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 Pfam PF00512 His Kinase A (phospho-acceptor) domain 130 195 7.8E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 312 330 2.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 348 2.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 306 2.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 SMART SM00304 69 121 9.4E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 SUPERFAMILY SSF55874 186 351 1.7E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 350 7.3E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 SMART SM00387 241 351 2.8E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2146 7275e6f4e88d7dd95eb7dc16f9c1f21f 358 Gene3D G3DSA:3.30.565.10 200 355 1.7E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4657 6ddf3d2ce2de1c31715eda8620352a08 189 SUPERFAMILY SSF52972 2 184 4.19E-63 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BMD_4657 6ddf3d2ce2de1c31715eda8620352a08 189 Gene3D G3DSA:3.90.950.10 1 188 7.0E-73 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BMD_4657 6ddf3d2ce2de1c31715eda8620352a08 189 Hamap MF_00528 Septum formation protein Maf [maf]. 4 189 32.32 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 BMD_4657 6ddf3d2ce2de1c31715eda8620352a08 189 PIRSF PIRSF006305 1 188 2.9E-61 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 BMD_4657 6ddf3d2ce2de1c31715eda8620352a08 189 TIGRFAM TIGR00172 maf: septum formation protein Maf 1 183 8.3E-66 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 BMD_4657 6ddf3d2ce2de1c31715eda8620352a08 189 Pfam PF02545 Maf-like protein 5 184 9.5E-60 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 Gene3D G3DSA:1.10.150.870 758 852 1.2E-7 T 13-10-2018 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 Pfam PF02811 PHP domain 5 166 7.7E-37 T 13-10-2018 IPR004013 PHP domain GO:0003824 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 SUPERFAMILY SSF89550 4 244 1.2E-12 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 Pfam PF14579 Helix-hairpin-helix motif 779 866 1.2E-25 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 Gene3D G3DSA:1.10.10.1600 416 493 1.2E-22 T 13-10-2018 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 Pfam PF01336 OB-fold nucleic acid binding domain 964 1029 2.1E-6 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 284 705 8.8E-174 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 SUPERFAMILY SSF160975 803 839 2.09E-6 T 13-10-2018 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 SMART SM00481 4 71 2.4E-23 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 Gene3D G3DSA:3.20.20.140 1 261 6.0E-80 T 13-10-2018 BMD_4765 c58d41a4c8bce9301aa754207dabb3b9 1116 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 991 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 TIGRFAM TIGR01229 rocF_arginase: arginase 6 298 4.9E-110 T 13-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 Pfam PF00491 Arginase family 4 294 4.8E-81 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 ProSitePatterns PS01053 Arginase family signature. 224 245 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 PIRSF PIRSF036979 1 295 4.2E-39 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 PRINTS PR00116 Arginase signature 96 111 5.2E-43 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 PRINTS PR00116 Arginase signature 173 191 5.2E-43 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 PRINTS PR00116 Arginase signature 221 250 5.2E-43 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 PRINTS PR00116 Arginase signature 256 270 5.2E-43 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 PRINTS PR00116 Arginase signature 119 146 5.2E-43 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 SUPERFAMILY SSF52768 4 295 7.38E-94 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_3891 ed06f2c82de0038b2732a8ef8b7375e2 299 Gene3D G3DSA:3.40.800.10 2 299 1.1E-116 T 13-10-2018 BMD_4671 e94ae0b5b114d3028eae8f2cce4910fd 277 Pfam PF01578 Cytochrome C assembly protein 69 270 7.8E-33 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 SUPERFAMILY SSF52540 123 461 6.26E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 709 1079 4.4E-92 T 13-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 Pfam PF02310 B12 binding domain 10 111 1.3E-11 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 Hamap MF_02050 Fused isobutyryl-CoA mutase [icmF]. 7 1080 16.686 T 13-10-2018 IPR033669 Fused isobutyryl-CoA mutase GO:0003924|GO:0005525|GO:0006637|GO:0031419|GO:0034784|GO:0047727 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 Pfam PF03308 ArgK protein 161 432 6.9E-41 T 13-10-2018 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 Gene3D G3DSA:3.40.50.300 197 406 5.3E-58 T 13-10-2018 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 SUPERFAMILY SSF51703 498 1076 2.25E-148 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 Gene3D G3DSA:3.40.50.280 3 143 1.2E-56 T 13-10-2018 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 Pfam PF01642 Methylmalonyl-CoA mutase 554 1072 9.7E-139 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 Gene3D G3DSA:3.20.20.240 479 1080 5.5E-187 T 13-10-2018 BMD_5166 e70ead22b6e1c1b0dfa78998b319a9a7 1080 SUPERFAMILY SSF52242 3 138 1.31E-38 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_0162 47096699caf77f5b7fcb34a3992fec4c 279 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0162 47096699caf77f5b7fcb34a3992fec4c 279 Gene3D G3DSA:3.40.50.300 2 277 3.4E-76 T 13-10-2018 BMD_0162 47096699caf77f5b7fcb34a3992fec4c 279 SMART SM00382 32 217 3.7E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0162 47096699caf77f5b7fcb34a3992fec4c 279 Pfam PF00005 ABC transporter 23 169 1.9E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0162 47096699caf77f5b7fcb34a3992fec4c 279 SUPERFAMILY SSF52540 6 229 4.44E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0162 47096699caf77f5b7fcb34a3992fec4c 279 TIGRFAM TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase 7 273 3.1E-116 T 13-10-2018 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 BMD_1242 e47a9b1054dc35bb8dfea8fac955ff4b 79 Pfam PF09388 Spo0E like sporulation regulatory protein 13 54 1.7E-15 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 BMD_1242 e47a9b1054dc35bb8dfea8fac955ff4b 79 SUPERFAMILY SSF140500 10 59 1.44E-14 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_1242 e47a9b1054dc35bb8dfea8fac955ff4b 79 Gene3D G3DSA:1.20.58.990 9 66 1.9E-11 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_1887 1cfc7b2299b75dcf877ed20552427a80 454 Gene3D G3DSA:1.20.1250.20 10 209 2.1E-15 T 13-10-2018 BMD_1887 1cfc7b2299b75dcf877ed20552427a80 454 Pfam PF13347 MFS/sugar transport protein 16 427 7.4E-103 T 13-10-2018 BMD_1887 1cfc7b2299b75dcf877ed20552427a80 454 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 15 440 2.3E-131 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 BMD_1887 1cfc7b2299b75dcf877ed20552427a80 454 Gene3D G3DSA:1.20.1250.20 214 427 7.6E-15 T 13-10-2018 BMD_1887 1cfc7b2299b75dcf877ed20552427a80 454 SUPERFAMILY SSF103473 12 425 3.66E-44 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1887 1cfc7b2299b75dcf877ed20552427a80 454 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 65 90 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 BMD_1246 4e08e38d74ddc4987a960cf84bd55c00 565 TIGRFAM TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family 14 561 2.5E-217 T 13-10-2018 IPR011976 Peptidase M3B, oligoendopeptidase-related BMD_1246 4e08e38d74ddc4987a960cf84bd55c00 565 Gene3D G3DSA:1.10.1370.30 1 565 1.4E-212 T 13-10-2018 BMD_1246 4e08e38d74ddc4987a960cf84bd55c00 565 SUPERFAMILY SSF55486 35 561 8.79E-125 T 13-10-2018 BMD_2320 e5533b2541822dc212e4a9ebda6b41eb 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 259 1.0E-60 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_2320 e5533b2541822dc212e4a9ebda6b41eb 260 Gene3D G3DSA:1.10.12.10 204 259 2.2E-19 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BMD_2320 e5533b2541822dc212e4a9ebda6b41eb 260 SUPERFAMILY SSF52096 1 259 2.72E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_2320 e5533b2541822dc212e4a9ebda6b41eb 260 Gene3D G3DSA:3.90.226.10 2 199 6.6E-65 T 13-10-2018 BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 SMART SM00357 3 66 2.2E-31 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.3E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 PRINTS PR00050 Cold shock protein signature 4 19 5.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 PRINTS PR00050 Cold shock protein signature 24 33 5.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 PRINTS PR00050 Cold shock protein signature 39 57 5.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 PIRSF PIRSF002599 1 67 3.5E-26 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 SUPERFAMILY SSF50249 1 66 1.07E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_1450 4a9fcfab8f569ba84f366cead2a89f67 67 Gene3D G3DSA:2.40.50.140 1 66 2.1E-31 T 13-10-2018 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 364 2.1E-73 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 PIRSF PIRSF039088 1 501 1.3E-252 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 SUPERFAMILY SSF47917 372 499 1.86E-46 T 13-10-2018 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 3 499 1.8E-258 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 Gene3D G3DSA:2.40.30.20 1 93 9.5E-38 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 499 51.491 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 371 484 1.1E-45 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 355 364 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 Gene3D G3DSA:1.20.150.20 372 499 6.7E-51 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 SUPERFAMILY SSF52540 95 370 3.93E-98 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 25 92 3.6E-21 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 Gene3D G3DSA:3.40.50.300 94 371 5.8E-128 T 13-10-2018 BMD_5136 6896c0ed14ac67e39f1c3128c1f088d0 502 SUPERFAMILY SSF50615 10 94 3.53E-31 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_1577 7a1e835a97fd457499027c92635e0f6f 281 Gene3D G3DSA:3.40.190.10 42 261 1.3E-49 T 13-10-2018 BMD_1577 7a1e835a97fd457499027c92635e0f6f 281 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 262 2.7E-37 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_1577 7a1e835a97fd457499027c92635e0f6f 281 SUPERFAMILY SSF53850 36 265 1.5E-39 T 13-10-2018 BMD_1577 7a1e835a97fd457499027c92635e0f6f 281 Gene3D G3DSA:3.40.190.10 104 226 1.3E-49 T 13-10-2018 BMD_1577 7a1e835a97fd457499027c92635e0f6f 281 SMART SM00062 34 264 1.6E-25 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 4.5E-12 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 320 339 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 Pfam PF04552 Sigma-54, DNA binding domain 273 431 1.9E-56 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 412 419 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 Pfam PF04963 Sigma-54 factor, core binding domain 74 259 4.7E-53 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 PIRSF PIRSF000774 1 433 5.9E-125 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 Gene3D G3DSA:1.10.10.60 372 432 2.7E-21 T 13-10-2018 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 431 1.6E-128 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 Gene3D G3DSA:1.10.10.1330 79 207 3.8E-25 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 PRINTS PR00045 Sigma-54 factor signature 332 344 6.8E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 PRINTS PR00045 Sigma-54 factor signature 407 425 6.8E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 PRINTS PR00045 Sigma-54 factor signature 348 359 6.8E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5041 79c1b86d86e1b8fc97a19ef45e60264a 436 PRINTS PR00045 Sigma-54 factor signature 145 162 6.8E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 Pfam PF02225 PA domain 341 404 3.4E-7 T 13-10-2018 IPR003137 PA domain BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 Gene3D G3DSA:3.50.30.30 300 428 5.7E-12 T 13-10-2018 BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 136 147 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 465 475 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 Pfam PF00082 Subtilase family 131 519 6.4E-67 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 SUPERFAMILY SSF52743 123 529 2.09E-84 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 180 190 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 SUPERFAMILY SSF52025 342 414 6.8E-6 T 13-10-2018 BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 PRINTS PR00723 Subtilisin serine protease family (S8) signature 176 189 3.1E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 PRINTS PR00723 Subtilisin serine protease family (S8) signature 464 480 3.1E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_5143 4a2b5b758eb72e166a68c6da17b636ba 730 PRINTS PR00723 Subtilisin serine protease family (S8) signature 131 150 3.1E-20 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_2101 07f4246d9e9b718f9c666f1c90cf4a54 191 Gene3D G3DSA:2.40.10.420 158 191 5.9E-12 T 13-10-2018 BMD_2101 07f4246d9e9b718f9c666f1c90cf4a54 191 Gene3D G3DSA:3.10.350.10 18 78 1.8E-15 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2101 07f4246d9e9b718f9c666f1c90cf4a54 191 SMART SM00257 28 71 3.0E-13 T 13-10-2018 IPR018392 LysM domain BMD_2101 07f4246d9e9b718f9c666f1c90cf4a54 191 Pfam PF07486 Cell Wall Hydrolase 92 189 5.8E-27 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_2101 07f4246d9e9b718f9c666f1c90cf4a54 191 SUPERFAMILY SSF54106 27 71 1.28E-9 T 13-10-2018 BMD_2101 07f4246d9e9b718f9c666f1c90cf4a54 191 Gene3D G3DSA:1.10.10.2520 79 154 1.2E-31 T 13-10-2018 BMD_2101 07f4246d9e9b718f9c666f1c90cf4a54 191 Pfam PF01476 LysM domain 29 71 5.2E-11 T 13-10-2018 IPR018392 LysM domain BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.4E-9 T 13-10-2018 IPR004176 Clp, N-terminal BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 97 150 3.2E-10 T 13-10-2018 IPR004176 Clp, N-terminal BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Pfam PF07724 AAA domain (Cdc48 subfamily) 604 769 3.2E-56 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 776 856 1.9E-25 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_0687 f631e15c83e6548ae3f04777f343325a 867 SMART SM00382 605 758 2.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0687 f631e15c83e6548ae3f04777f343325a 867 SMART SM00382 203 348 6.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0687 f631e15c83e6548ae3f04777f343325a 867 SUPERFAMILY SSF52540 162 553 3.09E-98 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Gene3D G3DSA:1.10.1780.10 1 153 2.1E-34 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 865 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Gene3D G3DSA:3.40.50.300 154 347 5.7E-74 T 13-10-2018 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 SMART SM01086 776 865 8.7E-35 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Gene3D G3DSA:3.40.50.300 348 552 1.7E-69 T 13-10-2018 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 639 657 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 299 311 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Gene3D G3DSA:3.40.50.300 558 774 9.6E-87 T 13-10-2018 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 609 627 9.5E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 683 701 9.5E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 654 672 9.5E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 716 730 9.5E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 SUPERFAMILY SSF81923 4 160 1.77E-36 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Gene3D G3DSA:1.10.8.60 776 867 1.2E-27 T 13-10-2018 BMD_0687 f631e15c83e6548ae3f04777f343325a 867 SUPERFAMILY SSF52540 554 864 1.48E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0687 f631e15c83e6548ae3f04777f343325a 867 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 208 340 1.3E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_2498 f22b16c56b676b4242a90e30d36ca8a4 314 SUPERFAMILY SSF53474 25 303 1.71E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2498 f22b16c56b676b4242a90e30d36ca8a4 314 Gene3D G3DSA:3.40.50.1820 1 311 2.3E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2498 f22b16c56b676b4242a90e30d36ca8a4 314 Pfam PF12146 Serine aminopeptidase, S33 26 290 9.2E-55 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_2640 aa08f8eb32187db2fe2086a911850f42 366 Gene3D G3DSA:3.40.50.1970 2 184 2.0E-55 T 13-10-2018 BMD_2640 aa08f8eb32187db2fe2086a911850f42 366 Gene3D G3DSA:1.20.1090.10 185 363 1.2E-60 T 13-10-2018 BMD_2640 aa08f8eb32187db2fe2086a911850f42 366 SUPERFAMILY SSF56796 6 353 8.11E-113 T 13-10-2018 BMD_2640 aa08f8eb32187db2fe2086a911850f42 366 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_2640 aa08f8eb32187db2fe2086a911850f42 366 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 350 4.1E-118 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 SMART SM00436 125 215 3.1E-33 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 Gene3D G3DSA:1.10.460.10 159 560 1.3E-134 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 Gene3D G3DSA:3.40.50.140 2 153 1.7E-52 T 13-10-2018 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 SMART SM00437 258 516 1.5E-80 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 672 1.2E-199 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 Pfam PF01131 DNA topoisomerase 152 550 5.3E-130 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 Gene3D G3DSA:1.10.290.10 267 395 1.3E-134 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 SUPERFAMILY SSF56712 1 589 2.49E-175 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 Pfam PF01751 Toprim domain 4 132 5.8E-15 T 13-10-2018 IPR006171 TOPRIM domain BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 2.0E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 479 493 2.0E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 381 397 2.0E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 301 310 2.0E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 185 203 2.0E-28 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 295 310 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 SMART SM00493 2 125 2.7E-22 T 13-10-2018 IPR006171 TOPRIM domain BMD_2189 05b26a14bf7f9c6f5d31999ef98fb435 693 Gene3D G3DSA:2.70.20.10 209 463 1.3E-134 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BMD_3456 513d17afb53c8dc492eecd2bada57fde 313 Pfam PF01261 Xylose isomerase-like TIM barrel 20 263 1.4E-30 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_3456 513d17afb53c8dc492eecd2bada57fde 313 SUPERFAMILY SSF51658 1 309 2.76E-40 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_3456 513d17afb53c8dc492eecd2bada57fde 313 Pfam PF07582 AP endonuclease family 2 C terminus 269 311 3.5E-9 T 13-10-2018 IPR011418 AP endonuclease, family 2, C-terminal BMD_3456 513d17afb53c8dc492eecd2bada57fde 313 Gene3D G3DSA:3.20.20.150 1 311 3.8E-60 T 13-10-2018 BMD_3792 173f50fd3cd177d7d2eabb5e11722c71 438 Pfam PF03600 Citrate transporter 13 383 4.6E-53 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BMD_3792 173f50fd3cd177d7d2eabb5e11722c71 438 TIGRFAM TIGR00784 citMHS: citrate transporter 1 437 2.3E-202 T 13-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 BMD_0955 9aa4bfa015caae9a81521dba1fc9a8d1 261 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 12 244 31.078 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_0955 9aa4bfa015caae9a81521dba1fc9a8d1 261 SUPERFAMILY SSF51569 7 243 8.79E-66 T 13-10-2018 BMD_0955 9aa4bfa015caae9a81521dba1fc9a8d1 261 Pfam PF01487 Type I 3-dehydroquinase 14 240 2.0E-60 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_0955 9aa4bfa015caae9a81521dba1fc9a8d1 261 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 13 240 9.8E-61 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_0955 9aa4bfa015caae9a81521dba1fc9a8d1 261 Gene3D G3DSA:3.20.20.70 5 248 3.3E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4703 c667d61049e5a6f8c4501de75fabfd0e 265 SMART SM00382 49 227 2.4E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4703 c667d61049e5a6f8c4501de75fabfd0e 265 SUPERFAMILY SSF52540 23 251 8.05E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4703 c667d61049e5a6f8c4501de75fabfd0e 265 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4703 c667d61049e5a6f8c4501de75fabfd0e 265 Pfam PF00005 ABC transporter 40 176 1.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4703 c667d61049e5a6f8c4501de75fabfd0e 265 Gene3D G3DSA:3.40.50.300 20 263 3.0E-61 T 13-10-2018 BMD_3653 d0c01c0f368cc1c6eb518aaf01de73e1 312 SUPERFAMILY SSF54593 5 283 1.15E-45 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3653 d0c01c0f368cc1c6eb518aaf01de73e1 312 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 266 3.6E-36 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_3653 d0c01c0f368cc1c6eb518aaf01de73e1 312 Gene3D G3DSA:3.10.180.10 67 210 2.0E-124 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3653 d0c01c0f368cc1c6eb518aaf01de73e1 312 Gene3D G3DSA:3.10.180.10 7 303 2.0E-124 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 Pfam PF00815 Histidinol dehydrogenase 15 418 1.3E-138 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 9 419 33.013 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 25 418 6.2E-139 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 Gene3D G3DSA:3.40.50.1980 225 341 8.7E-105 T 13-10-2018 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 192 217 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 243 262 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 25 49 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 100 127 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 162 188 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 353 371 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 312 337 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PRINTS PR00083 Histidinol dehydrogenase signature 221 242 1.0E-68 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 Gene3D G3DSA:3.40.50.1980 22 223 8.7E-105 T 13-10-2018 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 SUPERFAMILY SSF53720 21 419 1.04E-71 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 PIRSF PIRSF000099 2 422 1.3E-120 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_1657 28d27361093935c5fa0f7ed7753d1592 428 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 221 253 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 BMD_3836 6d70afbeeb39b79580605bf7a1837271 213 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 14 208 2.2E-75 T 13-10-2018 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent BMD_3836 6d70afbeeb39b79580605bf7a1837271 213 Gene3D G3DSA:2.30.110.10 27 153 2.3E-26 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BMD_3836 6d70afbeeb39b79580605bf7a1837271 213 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 35 128 4.9E-16 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BMD_3836 6d70afbeeb39b79580605bf7a1837271 213 SUPERFAMILY SSF50475 29 178 2.89E-18 T 13-10-2018 BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 422 432 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 SUPERFAMILY SSF89260 501 592 4.45E-9 T 13-10-2018 BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 SUPERFAMILY SSF52743 189 481 1.83E-72 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 Gene3D G3DSA:2.60.120.380 495 597 1.5E-15 T 13-10-2018 BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 509 581 3.8E-10 T 13-10-2018 IPR007280 Peptidase, C-terminal, archaeal/bacterial BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 Gene3D G3DSA:2.60.120.260 605 721 3.8E-8 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 207 218 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 269 279 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 PRINTS PR00723 Subtilisin serine protease family (S8) signature 421 437 2.0E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 PRINTS PR00723 Subtilisin serine protease family (S8) signature 265 278 2.0E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 PRINTS PR00723 Subtilisin serine protease family (S8) signature 202 221 2.0E-17 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 Gene3D G3DSA:3.40.50.200 159 484 7.7E-105 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_0297 7247d9a6852d5b6b05ff79dcf9801a93 723 Pfam PF00082 Subtilase family 205 461 1.0E-47 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 3.2E-102 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 4.7E-42 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 Pfam PF00303 Thymidylate synthase 2 264 4.3E-132 T 13-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 41.445 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.0E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 1.0E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 1.0E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 1.0E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 1.0E-51 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 SUPERFAMILY SSF55831 2 264 2.36E-134 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 13-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_4045 cf3dac31149f953bb7f044a6893c9dce 264 Gene3D G3DSA:3.30.572.10 1 264 5.8E-138 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 PIRSF PIRSF001423 1 552 1.5E-296 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 TIGRFAM TIGR01228 hutU: urocanate hydratase 7 549 7.9E-302 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 Pfam PF17392 Urocanase C-terminal domain 348 542 2.5E-95 T 13-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 Pfam PF17391 Urocanase N-terminal domain 8 134 9.8E-62 T 13-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 ProSitePatterns PS01233 Urocanase signature. 438 453 - T 13-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 Pfam PF01175 Urocanase Rossmann-like domain 137 345 8.0E-90 T 13-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 SUPERFAMILY SSF111326 4 551 6.28E-260 T 13-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 Gene3D G3DSA:3.40.50.10730 138 345 2.9E-255 T 13-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 Gene3D G3DSA:3.40.1770.10 16 538 2.9E-255 T 13-10-2018 BMD_1771 ca6f6b51f2ba9ba9a6ef3cbb0704f040 552 Hamap MF_00577 Urocanate hydratase [hutU]. 3 552 50.506 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_2429 ae12bc3b44966d79a2ddd4ca17533da4 268 Gene3D G3DSA:3.40.50.1980 1 118 1.3E-23 T 13-10-2018 BMD_2429 ae12bc3b44966d79a2ddd4ca17533da4 268 SUPERFAMILY SSF53807 2 256 2.8E-57 T 13-10-2018 BMD_2429 ae12bc3b44966d79a2ddd4ca17533da4 268 Pfam PF01497 Periplasmic binding protein 3 231 1.5E-32 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain BMD_2429 ae12bc3b44966d79a2ddd4ca17533da4 268 Gene3D G3DSA:3.40.50.1980 125 255 3.7E-26 T 13-10-2018 BMD_0102 9a6c2925a101b3bcb3557968ac2072fe 153 Gene3D G3DSA:1.10.10.1240 2 72 6.7E-36 T 13-10-2018 BMD_0102 9a6c2925a101b3bcb3557968ac2072fe 153 Pfam PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) 3 150 1.1E-58 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 BMD_0102 9a6c2925a101b3bcb3557968ac2072fe 153 PIRSF PIRSF010607 1 153 5.6E-66 T 13-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 BMD_0102 9a6c2925a101b3bcb3557968ac2072fe 153 Gene3D G3DSA:1.10.1200.150 73 153 3.7E-30 T 13-10-2018 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 Gene3D G3DSA:3.30.230.10 21 201 3.8E-138 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 TIGRFAM TIGR00131 gal_kin: galactokinase 5 386 6.9E-132 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 ProSitePatterns PS00106 Galactokinase signature. 26 37 - T 13-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 Pfam PF08544 GHMP kinases C terminal 285 366 4.0E-15 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 Gene3D G3DSA:3.30.70.890 202 362 3.8E-138 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00959 Mevalonate kinase family signature 24 48 3.1E-42 T 13-10-2018 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00959 Mevalonate kinase family signature 119 141 3.1E-42 T 13-10-2018 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00959 Mevalonate kinase family signature 162 181 3.1E-42 T 13-10-2018 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00959 Mevalonate kinase family signature 333 350 3.1E-42 T 13-10-2018 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 Pfam PF10509 Galactokinase galactose-binding signature 7 56 7.9E-21 T 13-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PIRSF PIRSF000530 1 389 2.4E-125 T 13-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 SUPERFAMILY SSF54211 4 202 2.96E-62 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 Pfam PF00288 GHMP kinases N terminal domain 115 181 9.8E-14 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00473 Galactokinase signature 112 130 1.9E-26 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00473 Galactokinase signature 91 102 1.9E-26 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00473 Galactokinase signature 269 283 1.9E-26 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 PRINTS PR00473 Galactokinase signature 26 44 1.9E-26 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 Hamap MF_00246 Galactokinase [galK]. 24 386 46.507 T 13-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 SUPERFAMILY SSF55060 205 385 2.06E-55 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BMD_0689 6b0155606694eccfba6d1ee55268bf0a 392 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 BMD_4785 f5959a85156cd6bfb3abbd19c79ace44 336 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 60 280 1.4E-83 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 BMD_4785 f5959a85156cd6bfb3abbd19c79ace44 336 Gene3D G3DSA:3.40.1750.20 173 239 3.2E-87 T 13-10-2018 BMD_4785 f5959a85156cd6bfb3abbd19c79ace44 336 Gene3D G3DSA:3.90.226.10 62 276 3.2E-87 T 13-10-2018 BMD_4785 f5959a85156cd6bfb3abbd19c79ace44 336 SUPERFAMILY SSF52096 56 270 5.97E-42 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4785 f5959a85156cd6bfb3abbd19c79ace44 336 Pfam PF01343 Peptidase family S49 133 283 2.2E-57 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BMD_0457 1f226b4d5832a5b4f3b877dccf8c8f25 437 Pfam PF00324 Amino acid permease 15 381 1.9E-32 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_0457 1f226b4d5832a5b4f3b877dccf8c8f25 437 Gene3D G3DSA:1.20.1740.10 8 433 2.7E-69 T 13-10-2018 BMD_0457 1f226b4d5832a5b4f3b877dccf8c8f25 437 PIRSF PIRSF006060 1 431 2.2E-65 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_4793 1e095adba0da9e902b692a7b9d89d885 215 Gene3D G3DSA:1.10.357.10 2 207 2.1E-39 T 13-10-2018 BMD_4793 1e095adba0da9e902b692a7b9d89d885 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 2.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_4793 1e095adba0da9e902b692a7b9d89d885 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 2.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_4793 1e095adba0da9e902b692a7b9d89d885 215 SUPERFAMILY SSF48498 79 173 1.33E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_4793 1e095adba0da9e902b692a7b9d89d885 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 56 5.9E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_4793 1e095adba0da9e902b692a7b9d89d885 215 SUPERFAMILY SSF46689 5 76 1.65E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_4793 1e095adba0da9e902b692a7b9d89d885 215 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_0828 8e1a876dead658aa3e4ad39e49e8c116 187 Pfam PF02632 BioY family 27 172 2.4E-34 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 BMD_0828 8e1a876dead658aa3e4ad39e49e8c116 187 Gene3D G3DSA:1.10.1760.20 1 179 5.3E-47 T 13-10-2018 BMD_0828 8e1a876dead658aa3e4ad39e49e8c116 187 PIRSF PIRSF016661 1 181 2.4E-48 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 SMART SM00448 5 115 2.7E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 SUPERFAMILY SSF52172 3 125 8.25E-43 T 13-10-2018 IPR011006 CheY-like superfamily BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 Gene3D G3DSA:3.40.50.2300 1 132 6.4E-41 T 13-10-2018 BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 Pfam PF00072 Response regulator receiver domain 8 115 6.3E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 SUPERFAMILY SSF46894 135 235 1.21E-31 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 SMART SM00862 156 233 8.5E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 Gene3D G3DSA:1.10.10.10 136 238 8.4E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4354 2fe28ae756c1d94742d44ae4290fd436 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 233 2.0E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_1532 765b4d969223ad2f5363f53ae407af42 230 SMART SM00100 15 133 1.2E-5 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain BMD_1532 765b4d969223ad2f5363f53ae407af42 230 Pfam PF00027 Cyclic nucleotide-binding domain 36 116 1.7E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain BMD_1532 765b4d969223ad2f5363f53ae407af42 230 Gene3D G3DSA:1.10.10.10 156 228 8.1E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1532 765b4d969223ad2f5363f53ae407af42 230 Gene3D G3DSA:2.60.120.10 13 155 2.0E-21 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_1532 765b4d969223ad2f5363f53ae407af42 230 SUPERFAMILY SSF51206 19 138 1.57E-24 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like BMD_1532 765b4d969223ad2f5363f53ae407af42 230 SUPERFAMILY SSF46785 151 224 5.77E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1532 765b4d969223ad2f5363f53ae407af42 230 Pfam PF13545 Crp-like helix-turn-helix domain 154 221 4.9E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BMD_1383 5285db8691b399d013547c140b9f940b 948 SUPERFAMILY SSF56601 246 703 5.43E-106 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_1383 5285db8691b399d013547c140b9f940b 948 SUPERFAMILY SSF53955 76 288 3.94E-74 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily BMD_1383 5285db8691b399d013547c140b9f940b 948 Gene3D G3DSA:1.10.3810.10 98 292 1.7E-211 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_1383 5285db8691b399d013547c140b9f940b 948 Gene3D G3DSA:3.40.710.10 328 659 1.7E-211 T 13-10-2018 BMD_1383 5285db8691b399d013547c140b9f940b 948 Pfam PF00912 Transglycosylase 89 264 1.4E-65 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_1383 5285db8691b399d013547c140b9f940b 948 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 98 648 1.1E-176 T 13-10-2018 BMD_1383 5285db8691b399d013547c140b9f940b 948 Gene3D G3DSA:3.90.1310.20 82 541 1.7E-211 T 13-10-2018 BMD_1383 5285db8691b399d013547c140b9f940b 948 Pfam PF00905 Penicillin binding protein transpeptidase domain 355 643 2.9E-45 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 SUPERFAMILY SSF46689 4 76 3.33E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 Pfam PF08360 QacR-like protein, C-terminal region 68 194 9.4E-25 T 13-10-2018 IPR013571 Transcription regulator QacR, C-terminal GO:0003700|GO:0045892 BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 6.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 6.0E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 Gene3D G3DSA:1.10.10.60 10 58 2.9E-21 T 13-10-2018 BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 SUPERFAMILY SSF48498 81 194 1.78E-27 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 1.3E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2113 c71b594223a57b6e560b8faf8c9fcc2f 199 Gene3D G3DSA:1.10.357.10 59 198 2.5E-39 T 13-10-2018 BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 23 738 0.0 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 SUPERFAMILY SSF56042 204 430 2.39E-58 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Gene3D G3DSA:3.30.1330.10 389 565 4.3E-63 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 743 324.977 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 SUPERFAMILY SSF55326 18 202 4.93E-51 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 SUPERFAMILY SSF55326 399 570 1.7E-59 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Pfam PF00586 AIR synthase related protein, N-terminal domain 445 562 5.2E-26 T 13-10-2018 IPR016188 PurM-like, N-terminal domain BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Pfam PF00586 AIR synthase related protein, N-terminal domain 89 194 9.9E-25 T 13-10-2018 IPR016188 PurM-like, N-terminal domain BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Gene3D G3DSA:3.30.1330.10 49 197 9.7E-136 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Gene3D G3DSA:3.90.650.10 34 362 9.7E-136 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 PIRSF PIRSF001587 7 742 0.0 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Pfam PF02769 AIR synthase related protein, C-terminal domain 576 712 1.4E-14 T 13-10-2018 IPR010918 PurM-like, C-terminal domain BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Pfam PF02769 AIR synthase related protein, C-terminal domain 208 360 5.3E-34 T 13-10-2018 IPR010918 PurM-like, C-terminal domain BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 SUPERFAMILY SSF56042 573 739 1.64E-35 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BMD_0277 48a7f5f43fbda48586e5f00e65aeb2d9 743 Gene3D G3DSA:3.90.650.10 570 741 1.9E-36 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 Gene3D G3DSA:3.50.30.20 2 148 5.9E-57 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00097 Anthranilate synthase component II signature 327 340 1.2E-6 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00097 Anthranilate synthase component II signature 214 223 1.2E-6 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00097 Anthranilate synthase component II signature 241 252 1.2E-6 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 SUPERFAMILY SSF52317 140 355 3.25E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 SMART SM01097 1 131 6.3E-88 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 356 48.99 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 4 353 1.2E-148 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00096 Glutamine amidotransferase superfamily signature 214 223 7.1E-12 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00096 Glutamine amidotransferase superfamily signature 327 340 7.1E-12 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00096 Glutamine amidotransferase superfamily signature 241 252 7.1E-12 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 Pfam PF00117 Glutamine amidotransferase class-I 174 350 1.2E-47 T 13-10-2018 IPR017926 Glutamine amidotransferase BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 Gene3D G3DSA:3.40.50.880 165 360 3.1E-35 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 172 186 1.8E-36 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 258 275 1.8E-36 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 241 257 1.8E-36 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 283 294 1.8E-36 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 211 225 1.8E-36 T 13-10-2018 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 4 129 1.6E-52 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4241 965a1b76c39f2b859524ee202c1364d8 361 SUPERFAMILY SSF52021 2 146 2.48E-57 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_2471 944d8601847bbbfc92501eb5a0819e79 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 4.1E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2471 944d8601847bbbfc92501eb5a0819e79 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 4.1E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2471 944d8601847bbbfc92501eb5a0819e79 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 15 30 4.1E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2471 944d8601847bbbfc92501eb5a0819e79 95 Gene3D G3DSA:1.10.10.10 1 93 4.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2471 944d8601847bbbfc92501eb5a0819e79 95 SMART SM00418 13 93 6.2E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2471 944d8601847bbbfc92501eb5a0819e79 95 Pfam PF12840 Helix-turn-helix domain 13 72 5.1E-10 T 13-10-2018 BMD_2471 944d8601847bbbfc92501eb5a0819e79 95 SUPERFAMILY SSF46785 6 91 5.73E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3989 138ba0b104491cd93551088f3a54bc44 289 Pfam PF00005 ABC transporter 18 154 3.4E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3989 138ba0b104491cd93551088f3a54bc44 289 Gene3D G3DSA:3.40.50.300 1 240 1.3E-41 T 13-10-2018 BMD_3989 138ba0b104491cd93551088f3a54bc44 289 SUPERFAMILY SSF52540 3 218 2.57E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3989 138ba0b104491cd93551088f3a54bc44 289 SMART SM00382 27 205 5.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5089 b944ccb311742fed485efe1bf63e427f 600 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 329 590 2.3E-55 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 BMD_5089 b944ccb311742fed485efe1bf63e427f 600 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 9 104 3.2E-23 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 SUPERFAMILY SSF53850 88 286 1.02E-19 T 13-10-2018 BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 Gene3D G3DSA:1.10.10.10 1 89 1.4E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.3E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 Gene3D G3DSA:3.40.190.290 90 284 5.6E-20 T 13-10-2018 BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 Pfam PF03466 LysR substrate binding domain 87 282 8.4E-23 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1038 7529d8df12b74a5d4173cb34e7d2e1bf 289 SUPERFAMILY SSF46785 1 80 1.65E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4820 39c440bd3a621d08a38326585b573a3b 216 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 1 212 31.136 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 BMD_4820 39c440bd3a621d08a38326585b573a3b 216 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 25 211 1.1E-63 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 BMD_4820 39c440bd3a621d08a38326585b573a3b 216 Pfam PF02390 Putative methyltransferase 39 207 8.6E-51 T 13-10-2018 BMD_4820 39c440bd3a621d08a38326585b573a3b 216 Gene3D G3DSA:3.40.50.150 1 211 1.9E-76 T 13-10-2018 BMD_4820 39c440bd3a621d08a38326585b573a3b 216 SUPERFAMILY SSF53335 8 207 6.92E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_3640 786de5ade8f8dba59ba4095c60bc9168 136 SUPERFAMILY SSF55331 2 133 3.5E-39 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_3640 786de5ade8f8dba59ba4095c60bc9168 136 Gene3D G3DSA:3.30.429.10 2 135 5.2E-43 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_3640 786de5ade8f8dba59ba4095c60bc9168 136 Pfam PF14552 Tautomerase enzyme 39 123 1.7E-26 T 13-10-2018 IPR037479 Tautomerase, MSAD family BMD_0836 d0aaff33f5b8047a4105a99d5a9a91eb 228 SUPERFAMILY SSF52172 6 136 2.28E-37 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0836 d0aaff33f5b8047a4105a99d5a9a91eb 228 SMART SM00448 6 119 1.5E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0836 d0aaff33f5b8047a4105a99d5a9a91eb 228 Pfam PF00072 Response regulator receiver domain 8 119 1.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0836 d0aaff33f5b8047a4105a99d5a9a91eb 228 Pfam PF04703 FaeA-like protein 167 208 1.6E-4 T 13-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 BMD_0836 d0aaff33f5b8047a4105a99d5a9a91eb 228 SUPERFAMILY SSF46785 164 210 1.82E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0836 d0aaff33f5b8047a4105a99d5a9a91eb 228 PIRSF PIRSF006171 4 228 7.3E-84 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 BMD_0836 d0aaff33f5b8047a4105a99d5a9a91eb 228 Gene3D G3DSA:3.40.50.2300 3 141 7.9E-35 T 13-10-2018 BMD_0890 a45e2255d755a0dead44fd687f2a72a8 185 Gene3D G3DSA:3.40.50.10490 1 185 1.4E-53 T 13-10-2018 BMD_0890 a45e2255d755a0dead44fd687f2a72a8 185 SUPERFAMILY SSF53697 5 184 8.23E-38 T 13-10-2018 BMD_0890 a45e2255d755a0dead44fd687f2a72a8 185 Pfam PF01380 SIS domain 33 155 9.2E-18 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0890 a45e2255d755a0dead44fd687f2a72a8 185 TIGRFAM TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase 8 185 2.0E-70 T 13-10-2018 IPR017552 3-hexulose-6-phosphate isomerase GO:0016853 BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 Gene3D G3DSA:3.40.190.290 91 290 2.2E-44 T 13-10-2018 BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 SUPERFAMILY SSF46785 3 111 2.73E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.4E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 SUPERFAMILY SSF53850 89 289 5.43E-43 T 13-10-2018 BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 Gene3D G3DSA:1.10.10.10 1 90 7.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2224 fdee2edc14ce658d5d0441aabe228952 290 Pfam PF03466 LysR substrate binding domain 88 289 1.4E-48 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 SUPERFAMILY SSF55874 276 428 2.49E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 Gene3D G3DSA:3.30.565.10 281 433 3.6E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 278 3.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 SMART SM00388 217 280 7.1E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 SUPERFAMILY SSF47384 213 276 3.34E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 SMART SM00387 323 429 1.2E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 Pfam PF08448 PAS fold 97 201 1.2E-9 T 13-10-2018 IPR013656 PAS fold-4 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 SUPERFAMILY SSF55785 77 200 1.05E-19 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 SMART SM00091 90 156 1.3E-9 T 13-10-2018 IPR000014 PAS domain BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 324 426 5.6E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 Gene3D G3DSA:3.30.450.20 77 200 9.7E-21 T 13-10-2018 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 Gene3D G3DSA:1.10.287.130 203 279 1.2E-15 T 13-10-2018 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 87 207 1.1E-18 T 13-10-2018 IPR000014 PAS domain BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 407 5.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 388 5.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 374 5.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0344 42a847b1124db8b72f0c063d18b2f2c3 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 426 5.9E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0479 50e4dc515a4719089a108b57c860f22d 253 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 96 225 2.3E-43 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 BMD_0479 50e4dc515a4719089a108b57c860f22d 253 SUPERFAMILY SSF55166 81 231 8.37E-36 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_0479 50e4dc515a4719089a108b57c860f22d 253 Gene3D G3DSA:3.30.1380.10 36 249 9.9E-78 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_4082 08f7f33fe0f1be42a337ac343546792d 325 Pfam PF01545 Cation efflux family 16 224 2.4E-28 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_4082 08f7f33fe0f1be42a337ac343546792d 325 Gene3D G3DSA:1.20.1510.10 11 226 6.7E-25 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_4082 08f7f33fe0f1be42a337ac343546792d 325 SUPERFAMILY SSF160240 232 307 1.83E-13 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BMD_4082 08f7f33fe0f1be42a337ac343546792d 325 SUPERFAMILY SSF161111 10 229 8.37E-30 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_4082 08f7f33fe0f1be42a337ac343546792d 325 Pfam PF16916 Dimerisation domain of Zinc Transporter 233 306 5.9E-12 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain BMD_4082 08f7f33fe0f1be42a337ac343546792d 325 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 13 308 3.1E-38 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_4082 08f7f33fe0f1be42a337ac343546792d 325 Gene3D G3DSA:3.30.70.1350 230 308 4.1E-10 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 626 760 6.8E-26 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 SUPERFAMILY SSF51905 147 302 1.19E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Pfam PF04324 BFD-like [2Fe-2S] binding domain 416 465 8.3E-14 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Pfam PF04324 BFD-like [2Fe-2S] binding domain 481 530 3.9E-11 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Gene3D G3DSA:3.90.480.20 540 632 3.7E-5 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 6.8E-23 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.8E-23 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 6.8E-23 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 6.8E-23 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 6.8E-23 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 556 618 7.5E-14 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 SUPERFAMILY SSF55124 517 635 1.42E-23 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Gene3D G3DSA:1.10.10.1100 416 470 8.2E-11 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Gene3D G3DSA:3.30.390.30 316 398 4.1E-12 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Gene3D G3DSA:3.30.413.10 633 761 9.7E-32 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 280 2.3E-57 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Gene3D G3DSA:3.50.50.60 7 280 4.1E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 4.5E-14 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 4.5E-14 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 4.5E-14 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 4.5E-14 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 Gene3D G3DSA:3.50.50.60 110 244 4.1E-93 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 791 0.0 T 13-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 SUPERFAMILY SSF56014 627 794 2.75E-49 T 13-10-2018 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00397 Sirohaem Fe-binding site signature 673 691 6.0E-7 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PRINTS PR00397 Sirohaem Fe-binding site signature 630 648 6.0E-7 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 SUPERFAMILY SSF51905 2 193 5.18E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1140 45ecc3bd382a3c57aa09ff54ea2fc509 804 PIRSF PIRSF037149 1 804 0.0 T 13-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 180 192 6.3E-16 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 209 6.3E-16 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 345 361 6.3E-16 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 PRINTS PR01042 Aspartyl-tRNA synthetase signature 385 399 6.3E-16 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 Gene3D G3DSA:2.40.50.140 2 100 1.2E-24 T 13-10-2018 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 Pfam PF01336 OB-fold nucleic acid binding domain 16 95 8.9E-15 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 Pfam PF00152 tRNA synthetases class II (D, K and N) 111 424 2.4E-85 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 2 429 5.5E-168 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 SUPERFAMILY SSF55681 110 424 7.26E-100 T 13-10-2018 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 SUPERFAMILY SSF50249 9 102 7.93E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_1379 11be329b3a30f51010ad68366c0b021c 430 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 1 430 42.413 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 BMD_1379 11be329b3a30f51010ad68366c0b021c 430 Gene3D G3DSA:3.30.930.10 101 430 1.6E-119 T 13-10-2018 BMD_1292 472c1049550eb1946ca58c1a03fb7657 387 Gene3D G3DSA:3.90.1150.10 29 377 2.1E-127 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1292 472c1049550eb1946ca58c1a03fb7657 387 Gene3D G3DSA:3.40.640.10 58 280 2.1E-127 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1292 472c1049550eb1946ca58c1a03fb7657 387 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 230 243 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BMD_1292 472c1049550eb1946ca58c1a03fb7657 387 Pfam PF00155 Aminotransferase class I and II 29 377 5.0E-65 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_1292 472c1049550eb1946ca58c1a03fb7657 387 SUPERFAMILY SSF53383 4 381 1.48E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 SUPERFAMILY SSF46600 183 235 1.44E-13 T 13-10-2018 IPR036876 UVR domain superfamily BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 Hamap MF_00203 UvrABC system protein C [uvrC]. 2 585 28.446 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 SUPERFAMILY SSF82771 14 97 8.63E-23 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 SUPERFAMILY SSF47781 500 587 1.43E-21 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 Gene3D G3DSA:3.30.420.340 363 521 2.5E-61 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 Pfam PF02151 UvrB/uvrC motif 200 230 2.6E-10 T 13-10-2018 IPR001943 UVR domain GO:0005515 BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 Gene3D G3DSA:1.10.150.20 525 587 6.7E-22 T 13-10-2018 BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 5 567 2.1E-211 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 Pfam PF01541 GIY-YIG catalytic domain 16 90 3.3E-9 T 13-10-2018 IPR000305 GIY-YIG endonuclease BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 Gene3D G3DSA:3.40.1440.10 1 99 1.8E-36 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 SMART SM00465 15 95 5.4E-21 T 13-10-2018 IPR000305 GIY-YIG endonuclease BMD_4714 7775ce6cce0f498010118651eb4ab5f2 588 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 371 521 3.0E-54 T 13-10-2018 IPR001162 UvrC family homology region BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Pfam PF03061 Thioesterase superfamily 351 424 8.3E-9 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Pfam PF00571 CBS domain 253 307 7.7E-9 T 13-10-2018 IPR000644 CBS domain BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Pfam PF00571 CBS domain 197 247 2.1E-5 T 13-10-2018 IPR000644 CBS domain BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 SUPERFAMILY SSF46785 5 54 5.17E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Gene3D G3DSA:1.10.10.10 5 69 6.6E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Pfam PF07085 DRTGG domain 76 178 1.4E-29 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Gene3D G3DSA:3.10.580.10 187 310 2.4E-24 T 13-10-2018 BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 SUPERFAMILY SSF75138 72 185 3.66E-29 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 SMART SM00116 259 307 2.2E-5 T 13-10-2018 IPR000644 CBS domain BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 SMART SM00116 200 248 7.8 T 13-10-2018 IPR000644 CBS domain BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 SUPERFAMILY SSF54637 338 431 3.66E-17 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Gene3D G3DSA:3.40.1390.20 70 178 4.8E-25 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 SUPERFAMILY SSF54631 182 307 2.53E-29 T 13-10-2018 BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Gene3D G3DSA:3.10.129.10 311 433 3.4E-9 T 13-10-2018 BMD_4770 ac76435897b2b7349d4fca63b81e6d98 438 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 50 4.2E-6 T 13-10-2018 BMD_0343 f7ff8cbb864455ad96260abb309f140d 250 Pfam PF01740 STAS domain 150 234 2.3E-11 T 13-10-2018 IPR002645 STAS domain BMD_0343 f7ff8cbb864455ad96260abb309f140d 250 SUPERFAMILY SSF52091 138 245 5.49E-15 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0343 f7ff8cbb864455ad96260abb309f140d 250 Gene3D G3DSA:3.30.750.24 134 248 1.9E-21 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1257 e7cad075478832b6b10b50ba8094ac2f 243 SUPERFAMILY SSF102114 25 176 2.35E-12 T 13-10-2018 BMD_1257 e7cad075478832b6b10b50ba8094ac2f 243 PIRSF PIRSF000370 3 243 2.9E-50 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BMD_1257 e7cad075478832b6b10b50ba8094ac2f 243 TIGRFAM TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 4 243 2.5E-115 T 13-10-2018 IPR017742 7-carboxy-7-deazaguanine synthase KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BMD_1257 e7cad075478832b6b10b50ba8094ac2f 243 Pfam PF13353 4Fe-4S single cluster domain 15 116 6.3E-10 T 13-10-2018 BMD_1257 e7cad075478832b6b10b50ba8094ac2f 243 Gene3D G3DSA:3.20.20.70 4 236 1.5E-29 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1257 e7cad075478832b6b10b50ba8094ac2f 243 Pfam PF04055 Radical SAM superfamily 29 125 4.9E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_1257 e7cad075478832b6b10b50ba8094ac2f 243 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 5 240 36.565 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 PIRSF PIRSF001123 263 372 0.0087 T 13-10-2018 IPR008007 Peptidase M42 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 PIRSF PIRSF001123 4 98 0.052 T 13-10-2018 IPR008007 Peptidase M42 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 PIRSF PIRSF001123 80 184 1.4E-4 T 13-10-2018 IPR008007 Peptidase M42 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 SUPERFAMILY SSF53187 5 371 4.28E-62 T 13-10-2018 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 Pfam PF07687 Peptidase dimerisation domain 181 274 2.5E-15 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 6 367 9.1E-165 T 13-10-2018 IPR010162 Peptidase M20B, peptidase T-like BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 Pfam PF01546 Peptidase family M20/M25/M40 74 368 8.7E-22 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 105 143 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 SUPERFAMILY SSF55031 180 285 7.72E-22 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 72 81 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 Gene3D G3DSA:3.30.70.360 177 288 3.4E-133 T 13-10-2018 BMD_4411 247e2a8de908e813d7baf46a51b12f30 372 Gene3D G3DSA:3.40.630.10 14 363 3.4E-133 T 13-10-2018 BMD_3878 34271343a6a0a590bd5d2807bc9e3573 508 SUPERFAMILY SSF53448 260 420 3.67E-16 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3878 34271343a6a0a590bd5d2807bc9e3573 508 SUPERFAMILY SSF53448 2 109 7.15E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3878 34271343a6a0a590bd5d2807bc9e3573 508 Pfam PF00535 Glycosyl transferase family 2 262 369 3.3E-9 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_3878 34271343a6a0a590bd5d2807bc9e3573 508 Pfam PF00535 Glycosyl transferase family 2 4 107 3.7E-19 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_3878 34271343a6a0a590bd5d2807bc9e3573 508 Gene3D G3DSA:3.90.550.10 244 492 5.6E-19 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3878 34271343a6a0a590bd5d2807bc9e3573 508 Gene3D G3DSA:3.90.550.10 1 180 1.2E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SMART SM00091 352 422 0.0021 T 13-10-2018 IPR000014 PAS domain BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SMART SM00091 219 284 2.0E-7 T 13-10-2018 IPR000014 PAS domain BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 695 6.8E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Pfam PF13426 PAS domain 230 332 4.4E-15 T 13-10-2018 IPR000014 PAS domain BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 348 474 1.3E-12 T 13-10-2018 IPR000014 PAS domain BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 218 340 2.6E-23 T 13-10-2018 IPR000014 PAS domain BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SUPERFAMILY SSF55785 342 464 1.71E-16 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 PRINTS PR00344 Bacterial sensor protein C-terminal signature 656 674 8.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 641 8.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 PRINTS PR00344 Bacterial sensor protein C-terminal signature 680 693 8.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 PRINTS PR00344 Bacterial sensor protein C-terminal signature 645 655 8.0E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SUPERFAMILY SSF55874 542 694 3.8E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SUPERFAMILY SSF55785 210 331 7.5E-22 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Pfam PF07694 5TMR of 5TMR-LYT 28 144 1.3E-7 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SMART SM00387 589 695 2.7E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SUPERFAMILY SSF47384 476 545 1.94E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SMART SM00086 291 333 1.0E-6 T 13-10-2018 IPR001610 PAC motif BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SMART SM00086 428 468 53.0 T 13-10-2018 IPR001610 PAC motif BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Gene3D G3DSA:3.30.450.20 212 347 8.8E-27 T 13-10-2018 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Gene3D G3DSA:3.30.565.10 548 695 1.1E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Gene3D G3DSA:1.10.287.130 469 546 9.7E-20 T 13-10-2018 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Pfam PF00512 His Kinase A (phospho-acceptor) domain 484 544 1.0E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Pfam PF13188 PAS domain 353 411 1.6E-6 T 13-10-2018 IPR000014 PAS domain BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 Gene3D G3DSA:3.30.450.20 348 465 1.7E-19 T 13-10-2018 BMD_2283 3c122e9894e075cdbae99a67b53758ec 695 SMART SM00388 483 547 1.1E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4644 6af2b8570bf8c847b70da74cf2aacc92 178 Gene3D G3DSA:1.10.287.130 1 57 3.5E-23 T 13-10-2018 BMD_4644 6af2b8570bf8c847b70da74cf2aacc92 178 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 4 57 4.0E-21 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain BMD_4644 6af2b8570bf8c847b70da74cf2aacc92 178 Pfam PF14682 Sporulation initiation phospho-transferase B, C-terminal 62 171 4.7E-28 T 13-10-2018 IPR016122 Sporulation initiation phosphotransferase B, C-terminal BMD_4644 6af2b8570bf8c847b70da74cf2aacc92 178 SMART SM01317 59 173 2.8E-22 T 13-10-2018 IPR016122 Sporulation initiation phosphotransferase B, C-terminal BMD_4644 6af2b8570bf8c847b70da74cf2aacc92 178 Gene3D G3DSA:3.30.565.30 58 176 1.3E-31 T 13-10-2018 IPR037100 Sporulation initiation phosphotransferase B, C-terminal domain superfamily BMD_4644 6af2b8570bf8c847b70da74cf2aacc92 178 SUPERFAMILY SSF55890 1 152 1.03E-40 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 BMD_2516 4725d03cdd9c94ee033e80bce36a2d19 360 SUPERFAMILY SSF56349 40 347 8.54E-41 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BMD_2516 4725d03cdd9c94ee033e80bce36a2d19 360 Gene3D G3DSA:1.10.443.10 163 350 2.4E-38 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BMD_2516 4725d03cdd9c94ee033e80bce36a2d19 360 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 43 115 1.6E-7 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BMD_2516 4725d03cdd9c94ee033e80bce36a2d19 360 Pfam PF00589 Phage integrase family 172 345 6.7E-27 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BMD_2516 4725d03cdd9c94ee033e80bce36a2d19 360 Gene3D G3DSA:1.10.150.130 32 146 2.0E-9 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 Pfam PF00390 Malic enzyme, N-terminal domain 82 263 2.9E-68 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 SUPERFAMILY SSF53223 6 273 4.96E-98 T 13-10-2018 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 SMART SM01274 82 264 2.2E-82 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 Gene3D G3DSA:3.40.50.10380 16 271 1.9E-100 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 SUPERFAMILY SSF51735 274 563 1.66E-91 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PIRSF PIRSF000106 2 565 1.6E-224 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 SMART SM00919 274 534 2.4E-122 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 Gene3D G3DSA:3.40.50.720 272 567 1.5E-109 T 13-10-2018 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PRINTS PR00072 Malic enzyme signature 270 286 9.6E-67 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PRINTS PR00072 Malic enzyme signature 186 208 9.6E-67 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PRINTS PR00072 Malic enzyme signature 150 179 9.6E-67 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PRINTS PR00072 Malic enzyme signature 301 317 9.6E-67 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PRINTS PR00072 Malic enzyme signature 412 428 9.6E-67 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PRINTS PR00072 Malic enzyme signature 88 112 9.6E-67 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 PRINTS PR00072 Malic enzyme signature 245 263 9.6E-67 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 Pfam PF03949 Malic enzyme, NAD binding domain 274 533 1.1E-104 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_2620 b436e3e34245c9e584c4dd28bf3669e9 567 ProSitePatterns PS00331 Malic enzymes signature. 270 286 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BMD_3815 f9f1e501b6e6bd18d608261c503d66b3 267 Gene3D G3DSA:2.30.320.10 5 267 1.8E-86 T 13-10-2018 IPR035948 YwqG-like superfamily BMD_3815 f9f1e501b6e6bd18d608261c503d66b3 267 Pfam PF09234 Domain of unknown function (DUF1963) 42 266 1.2E-61 T 13-10-2018 IPR015315 Protein of unknown function DUF1963 BMD_3815 f9f1e501b6e6bd18d608261c503d66b3 267 SUPERFAMILY SSF103032 7 267 6.67E-69 T 13-10-2018 IPR035948 YwqG-like superfamily BMD_3603 f82f7dc8acff871223c8b870efd4909a 143 SUPERFAMILY SSF88697 1 139 1.79E-21 T 13-10-2018 IPR015947 PUA-like superfamily BMD_3603 f82f7dc8acff871223c8b870efd4909a 143 Gene3D G3DSA:2.30.130.30 1 141 1.1E-29 T 13-10-2018 BMD_3603 f82f7dc8acff871223c8b870efd4909a 143 Pfam PF04266 ASCH domain 4 91 1.2E-5 T 13-10-2018 IPR007374 ASCH domain BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 11 357 3.7E-144 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 Gene3D G3DSA:3.40.50.300 201 384 1.1E-32 T 13-10-2018 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 SUPERFAMILY SSF52540 201 370 5.53E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 PIRSF PIRSF006809 3 419 1.0E-147 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 Hamap MF_00900 GTPase HflX [hflX]. 30 387 47.098 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 203 223 1.6E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 270 288 1.6E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 Pfam PF13167 GTP-binding GTPase N-terminal 27 115 8.3E-33 T 13-10-2018 IPR025121 GTPase HflX, N-terminal BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 Gene3D G3DSA:3.40.50.11060 22 141 1.6E-41 T 13-10-2018 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 Pfam PF01926 50S ribosome-binding GTPase 202 321 9.5E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4089 a9d3e596c0f428bc5a50b1664dfdf030 420 Pfam PF16360 GTP-binding GTPase Middle Region 117 195 8.7E-32 T 13-10-2018 IPR032305 GTP-binding protein, middle domain BMD_0696 daf055d938de31d343b427669660ffdf 312 SUPERFAMILY SSF53901 4 310 7.07E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_0696 daf055d938de31d343b427669660ffdf 312 Gene3D G3DSA:3.40.47.10 1 312 3.1E-132 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_0696 daf055d938de31d343b427669660ffdf 312 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 310 71.108 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_0696 daf055d938de31d343b427669660ffdf 312 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 221 310 7.5E-35 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_0696 daf055d938de31d343b427669660ffdf 312 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 310 7.6E-134 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_0696 daf055d938de31d343b427669660ffdf 312 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 184 2.7E-31 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 67 8.5E-25 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 SMART SM00357 5 69 5.4E-20 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 PRINTS PR00050 Cold shock protein signature 27 36 2.6E-13 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 PRINTS PR00050 Cold shock protein signature 42 60 2.6E-13 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 PRINTS PR00050 Cold shock protein signature 6 21 2.6E-13 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 Gene3D G3DSA:2.40.50.140 1 67 2.1E-24 T 13-10-2018 BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 SUPERFAMILY SSF50249 3 69 1.2E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_3482 79eb4abc808f86e4a7e320739aa94f01 70 PIRSF PIRSF002599 1 70 3.5E-21 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_1625 5d4d43c70faaab487fd033fad224e542 303 SUPERFAMILY SSF54001 181 300 1.13E-39 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_1625 5d4d43c70faaab487fd033fad224e542 303 SUPERFAMILY SSF47090 26 91 3.14E-17 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_1625 5d4d43c70faaab487fd033fad224e542 303 Gene3D G3DSA:3.90.1720.10 179 303 2.5E-40 T 13-10-2018 BMD_1625 5d4d43c70faaab487fd033fad224e542 303 Pfam PF00877 NlpC/P60 family 199 298 1.8E-29 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_1625 5d4d43c70faaab487fd033fad224e542 303 Gene3D G3DSA:1.10.101.10 99 178 3.2E-22 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_1625 5d4d43c70faaab487fd033fad224e542 303 Gene3D G3DSA:1.10.101.10 22 98 1.9E-20 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_1625 5d4d43c70faaab487fd033fad224e542 303 Pfam PF01471 Putative peptidoglycan binding domain 36 91 8.7E-14 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_1625 5d4d43c70faaab487fd033fad224e542 303 Pfam PF01471 Putative peptidoglycan binding domain 111 166 1.3E-16 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_1625 5d4d43c70faaab487fd033fad224e542 303 SUPERFAMILY SSF47090 98 168 8.63E-21 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SUPERFAMILY SSF55785 217 336 3.66E-15 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Pfam PF00989 PAS fold 237 339 2.4E-13 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Pfam PF00989 PAS fold 118 218 5.8E-13 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 392 405 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SUPERFAMILY SSF51735 1 133 2.34E-10 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4430 27ce01268e2672a9030e224868ef2c41 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 117 224 3.8E-11 T 13-10-2018 IPR000014 PAS domain BMD_4430 27ce01268e2672a9030e224868ef2c41 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 233 349 4.1E-16 T 13-10-2018 IPR000014 PAS domain BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Pfam PF00158 Sigma-54 interaction domain 368 536 2.4E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Gene3D G3DSA:3.30.450.20 104 219 1.9E-21 T 13-10-2018 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Gene3D G3DSA:3.30.450.20 223 339 8.9E-18 T 13-10-2018 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SUPERFAMILY SSF55785 104 215 1.31E-18 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SUPERFAMILY SSF52540 367 606 8.42E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Gene3D G3DSA:1.10.10.60 627 686 1.7E-13 T 13-10-2018 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Gene3D G3DSA:1.10.8.60 540 618 1.3E-21 T 13-10-2018 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Gene3D G3DSA:3.40.50.300 355 539 7.5E-64 T 13-10-2018 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 Pfam PF02954 Bacterial regulatory protein, Fis family 642 681 1.2E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 455 470 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SMART SM00091 117 184 1.6E-9 T 13-10-2018 IPR000014 PAS domain BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SMART SM00091 236 301 2.0E-6 T 13-10-2018 IPR000014 PAS domain BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SMART SM00382 388 532 3.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4430 27ce01268e2672a9030e224868ef2c41 689 SUPERFAMILY SSF46689 582 683 4.3E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 647 664 1.1E-6 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 664 684 1.1E-6 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_4430 27ce01268e2672a9030e224868ef2c41 689 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 582 591 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BMD_3998 d74788aec76880ea5df455124c3545fd 169 Gene3D G3DSA:3.40.630.30 1 168 4.6E-43 T 13-10-2018 BMD_3998 d74788aec76880ea5df455124c3545fd 169 SUPERFAMILY SSF55729 1 164 1.89E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3998 d74788aec76880ea5df455124c3545fd 169 Pfam PF00583 Acetyltransferase (GNAT) family 29 140 5.8E-19 T 13-10-2018 IPR000182 GNAT domain BMD_3633 8b0611101d013b88112f6ef6826f45f5 272 Gene3D G3DSA:3.30.750.24 156 272 6.4E-33 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3633 8b0611101d013b88112f6ef6826f45f5 272 Pfam PF01740 STAS domain 163 266 4.0E-12 T 13-10-2018 IPR002645 STAS domain BMD_3633 8b0611101d013b88112f6ef6826f45f5 272 SUPERFAMILY SSF52091 162 269 1.61E-15 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 PRINTS PR01035 Tetracycline resistance protein signature 276 296 4.6E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 PRINTS PR01035 Tetracycline resistance protein signature 43 59 4.6E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 PRINTS PR01035 Tetracycline resistance protein signature 162 184 4.6E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 PRINTS PR01035 Tetracycline resistance protein signature 132 153 4.6E-7 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 Pfam PF07690 Major Facilitator Superfamily 38 318 1.3E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 SUPERFAMILY SSF103473 26 416 1.7E-74 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 Gene3D G3DSA:1.20.1250.20 232 416 6.1E-30 T 13-10-2018 BMD_2581 02a4a2cf54bb8407330b83e1862f6393 425 Gene3D G3DSA:1.20.1250.20 27 231 8.9E-43 T 13-10-2018 BMD_1608 d866976184908714243970f36015d2c0 248 Gene3D G3DSA:3.40.50.1580 16 245 3.4E-32 T 13-10-2018 BMD_1608 d866976184908714243970f36015d2c0 248 SUPERFAMILY SSF53167 16 242 1.44E-37 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BMD_1608 d866976184908714243970f36015d2c0 248 Pfam PF01048 Phosphorylase superfamily 55 215 6.5E-16 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 Pfam PF00753 Metallo-beta-lactamase superfamily 110 339 1.1E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 SUPERFAMILY SSF55718 525 640 3.24E-15 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 Pfam PF14863 Alkyl sulfatase dimerisation 376 512 4.8E-54 T 13-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 Gene3D G3DSA:3.30.1050.10 520 643 1.2E-19 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 Gene3D G3DSA:1.25.40.880 375 514 2.1E-56 T 13-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 SUPERFAMILY SSF56281 12 516 3.08E-131 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 Pfam PF14864 Alkyl sulfatase C-terminal 522 640 5.7E-24 T 13-10-2018 IPR029229 Alkyl sulfatase, C-terminal BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 SMART SM00849 114 339 1.1E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2411 4a5f1fb9cd6d565d6d4b2d94d27bf723 644 Gene3D G3DSA:3.60.15.30 11 374 1.5E-136 T 13-10-2018 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 SUPERFAMILY SSF142695 203 374 3.79E-74 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 208 395 1.2E-82 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 Gene3D G3DSA:3.40.50.10990 205 374 4.3E-78 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 201 38.023 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 6 196 1.7E-82 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 Pfam PF00925 GTP cyclohydrolase II 206 371 1.6E-77 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 1 197 3.9E-79 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 1 393 55.502 T 13-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 Gene3D G3DSA:3.90.870.10 1 204 2.5E-86 T 13-10-2018 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 SUPERFAMILY SSF55821 2 204 6.18E-84 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BMD_1278 72b21a687873aa91591b2f375245f9dc 397 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 202 397 42.375 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1278 72b21a687873aa91591b2f375245f9dc 397 PIRSF PIRSF001259 1 397 2.2E-188 T 13-10-2018 BMD_3065 5c0cf49afbaace68ea9c02c7bcfd5819 153 Pfam PF05163 DinB family 4 147 9.6E-24 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB BMD_3065 5c0cf49afbaace68ea9c02c7bcfd5819 153 SUPERFAMILY SSF109854 2 147 3.21E-31 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_3065 5c0cf49afbaace68ea9c02c7bcfd5819 153 Gene3D G3DSA:1.20.120.450 1 143 2.5E-35 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_0144 8eada0b75c72827fa03b28cb9aa01aaa 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0144 8eada0b75c72827fa03b28cb9aa01aaa 122 SMART SM01374 1 122 1.0E-84 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BMD_0144 8eada0b75c72827fa03b28cb9aa01aaa 122 SUPERFAMILY SSF50193 1 122 4.45E-50 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0144 8eada0b75c72827fa03b28cb9aa01aaa 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.8E-58 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 BMD_0144 8eada0b75c72827fa03b28cb9aa01aaa 122 Gene3D G3DSA:2.40.150.20 1 122 2.4E-53 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0144 8eada0b75c72827fa03b28cb9aa01aaa 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 6.3E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BMD_0144 8eada0b75c72827fa03b28cb9aa01aaa 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 25.814 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BMD_2582 8bc539b4178deadd7cc5ef51d3c0e2d3 390 Gene3D G3DSA:1.20.1250.20 6 380 1.6E-58 T 13-10-2018 BMD_2582 8bc539b4178deadd7cc5ef51d3c0e2d3 390 Pfam PF07690 Major Facilitator Superfamily 16 334 2.1E-36 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2582 8bc539b4178deadd7cc5ef51d3c0e2d3 390 SUPERFAMILY SSF103473 12 382 1.16E-60 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2582 8bc539b4178deadd7cc5ef51d3c0e2d3 390 PRINTS PR01035 Tetracycline resistance protein signature 134 156 6.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2582 8bc539b4178deadd7cc5ef51d3c0e2d3 390 PRINTS PR01035 Tetracycline resistance protein signature 162 182 6.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2582 8bc539b4178deadd7cc5ef51d3c0e2d3 390 PRINTS PR01035 Tetracycline resistance protein signature 21 37 6.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1669 63a6ae58cd746a6e61493a301b389131 108 Pfam PF11181 Heat induced stress protein YflT 4 102 1.6E-18 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 SUPERFAMILY SSF52374 163 374 1.27E-88 T 13-10-2018 BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 Gene3D G3DSA:3.10.400.10 21 159 4.4E-47 T 13-10-2018 BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 SUPERFAMILY SSF88697 4 156 6.46E-49 T 13-10-2018 IPR015947 PUA-like superfamily BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 Pfam PF01747 ATP-sulfurylase 163 373 1.8E-96 T 13-10-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 TIGRFAM TIGR00339 sopT: sulfate adenylyltransferase 25 373 3.7E-136 T 13-10-2018 IPR002650 Sulphate adenylyltransferase GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 Hamap MF_00066 Sulfate adenylyltransferase [sat]. 21 377 50.993 T 13-10-2018 IPR020792 Sulphate adenylyltransferase, prokaryotic-type GO:0000103|GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 Gene3D G3DSA:3.40.50.620 164 375 1.7E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4916 f1c4903bb5c370826f0de24f18dc71ab 383 Pfam PF14306 PUA-like domain 5 154 1.9E-50 T 13-10-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BMD_0672 09a9a31bf3940f72833a0a5cb6c14fa1 281 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 11 216 1.3E-55 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_0672 09a9a31bf3940f72833a0a5cb6c14fa1 281 PIRSF PIRSF006483 1 281 5.0E-92 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_0672 09a9a31bf3940f72833a0a5cb6c14fa1 281 Gene3D G3DSA:3.30.70.120 194 269 4.1E-19 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_0672 09a9a31bf3940f72833a0a5cb6c14fa1 281 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 222 276 5.9E-19 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 SUPERFAMILY SSF53067 1 194 1.49E-73 T 13-10-2018 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 PIRSF PIRSF000722 1 396 2.7E-155 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 TIGRFAM TIGR00016 ackA: acetate kinase 2 394 1.8E-178 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 Gene3D G3DSA:3.30.420.40 2 194 1.6E-76 T 13-10-2018 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 Gene3D G3DSA:3.30.420.40 195 396 3.6E-83 T 13-10-2018 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 SUPERFAMILY SSF53067 157 393 8.07E-95 T 13-10-2018 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 PRINTS PR00471 Acetate kinase family signature 172 185 2.8E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 PRINTS PR00471 Acetate kinase family signature 299 312 2.8E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 PRINTS PR00471 Acetate kinase family signature 4 15 2.8E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 PRINTS PR00471 Acetate kinase family signature 321 337 2.8E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 PRINTS PR00471 Acetate kinase family signature 375 387 2.8E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 PRINTS PR00471 Acetate kinase family signature 202 223 2.8E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 Hamap MF_00020 Acetate kinase [ackA]. 1 396 199.903 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4779 91d7a2b6fd832c0d4f5fec3b948bd39e 396 Pfam PF00871 Acetokinase family 3 388 1.5E-173 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BMD_4755 afc1f6ebe6dc587798cb3990cf8de2f7 428 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 307 326 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BMD_4755 afc1f6ebe6dc587798cb3990cf8de2f7 428 SUPERFAMILY SSF53659 3 422 9.54E-142 T 13-10-2018 BMD_4755 afc1f6ebe6dc587798cb3990cf8de2f7 428 SMART SM01329 21 418 1.2E-187 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_4755 afc1f6ebe6dc587798cb3990cf8de2f7 428 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 2 422 7.2E-223 T 13-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BMD_4755 afc1f6ebe6dc587798cb3990cf8de2f7 428 Gene3D G3DSA:3.40.718.10 1 423 6.4E-183 T 13-10-2018 BMD_4755 afc1f6ebe6dc587798cb3990cf8de2f7 428 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 22 417 1.6E-124 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 116 129 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 230 250 6.6E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 356 367 6.6E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 188 210 6.6E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 108 122 6.6E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 Gene3D G3DSA:3.40.50.720 204 357 2.8E-176 T 13-10-2018 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 Gene3D G3DSA:1.10.8.1210 382 430 1.7E-14 T 13-10-2018 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 52 179 1.4E-54 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 Gene3D G3DSA:3.40.50.10860 49 184 2.8E-176 T 13-10-2018 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 SUPERFAMILY SSF51735 197 429 4.33E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 197 428 5.2E-74 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 Gene3D G3DSA:1.10.8.1210 25 358 2.8E-176 T 13-10-2018 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 PIRSF PIRSF000185 7 430 5.3E-167 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 SMART SM00839 199 428 5.2E-86 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2413 68f660a6d6fbfa3133355a1ea19f12f3 430 SUPERFAMILY SSF53223 21 199 6.72E-66 T 13-10-2018 BMD_2461 003f8d249472d72a6f5f523d7d0f74ab 269 Gene3D G3DSA:3.40.50.10090 13 257 3.6E-74 T 13-10-2018 BMD_2461 003f8d249472d72a6f5f523d7d0f74ab 269 SUPERFAMILY SSF69618 6 267 1.12E-54 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_2461 003f8d249472d72a6f5f523d7d0f74ab 269 Pfam PF02602 Uroporphyrinogen-III synthase HemD 19 256 2.1E-38 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_2461 003f8d249472d72a6f5f523d7d0f74ab 269 Gene3D G3DSA:3.40.50.10090 37 173 3.6E-74 T 13-10-2018 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 Pfam PF01471 Putative peptidoglycan binding domain 398 453 4.8E-14 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 SUPERFAMILY SSF52096 49 379 2.65E-71 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 Pfam PF03572 Peptidase family S41 212 374 8.9E-49 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 Pfam PF13180 PDZ domain 112 191 4.5E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 SMART SM00228 111 182 3.3E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 Gene3D G3DSA:1.10.101.10 385 466 1.9E-15 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 SMART SM00245 184 375 7.1E-68 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 Gene3D G3DSA:3.30.750.44 58 350 8.6E-94 T 13-10-2018 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 SUPERFAMILY SSF50156 82 204 5.53E-23 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 64 386 2.4E-120 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 Gene3D G3DSA:3.90.226.10 199 372 8.6E-94 T 13-10-2018 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 Gene3D G3DSA:2.30.42.10 111 198 8.6E-94 T 13-10-2018 BMD_5074 88ae0259870c78d1a21b43cefa0918bd 479 SUPERFAMILY SSF47090 385 456 2.22E-16 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_0664 976c7cc07c7e1a28ca620b232f924096 559 SUPERFAMILY SSF53187 15 530 4.98E-30 T 13-10-2018 BMD_0664 976c7cc07c7e1a28ca620b232f924096 559 Pfam PF01546 Peptidase family M20/M25/M40 132 202 1.7E-8 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_0664 976c7cc07c7e1a28ca620b232f924096 559 PIRSF PIRSF010386 3 555 2.1E-210 T 13-10-2018 IPR012166 Uncharacterised protein family RocB BMD_0664 976c7cc07c7e1a28ca620b232f924096 559 Gene3D G3DSA:3.40.630.10 8 230 2.2E-29 T 13-10-2018 BMD_3962 034aeec105f8b99116738f147715c397 283 SUPERFAMILY SSF54593 7 168 3.03E-40 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3962 034aeec105f8b99116738f147715c397 283 Gene3D G3DSA:3.10.180.10 168 283 4.9E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3962 034aeec105f8b99116738f147715c397 283 Gene3D G3DSA:3.10.180.10 10 134 1.5E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3962 034aeec105f8b99116738f147715c397 283 ProSitePatterns PS00934 Glyoxalase I signature 1. 172 193 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 BMD_3962 034aeec105f8b99116738f147715c397 283 SUPERFAMILY SSF54593 170 282 1.4E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3962 034aeec105f8b99116738f147715c397 283 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 170 267 2.4E-5 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_3962 034aeec105f8b99116738f147715c397 283 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 14 124 9.0E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 174 5.7E-54 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 Gene3D G3DSA:1.10.1040.10 181 436 3.5E-114 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 8.8E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 67 96 8.8E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 358 380 8.8E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 8.8E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 250 277 8.8E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 120 145 8.8E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 SMART SM01350 179 469 6.3E-235 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 469 3.1E-235 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 468 1.9E-139 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 SUPERFAMILY SSF48179 177 469 3.8E-135 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 Gene3D G3DSA:3.40.50.720 1 180 5.6E-60 T 13-10-2018 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 254 266 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 PIRSF PIRSF000109 1 470 6.4E-249 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 SUPERFAMILY SSF51735 4 177 2.18E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5197 eae4c7f20ffa83b8a16f0796c213bab9 470 Gene3D G3DSA:1.20.5.320 437 470 1.7E-21 T 13-10-2018 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 SUPERFAMILY SSF103190 99 193 9.42E-11 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_2455 12450c00aba71659bb05b487d927fd2b 641 Gene3D G3DSA:3.30.450.20 72 183 1.8E-37 T 13-10-2018 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 Gene3D G3DSA:1.10.8.500 303 353 1.3E-10 T 13-10-2018 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 SUPERFAMILY SSF58104 323 638 3.01E-70 T 13-10-2018 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 Pfam PF02743 Cache domain 43 265 1.1E-28 T 13-10-2018 IPR033479 Double Cache domain 1 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 SMART SM00283 384 641 4.1E-67 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 Pfam PF00672 HAMP domain 304 351 9.2E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 SMART SM00304 303 355 1.9E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 Gene3D G3DSA:1.10.287.950 354 641 5.7E-68 T 13-10-2018 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 Gene3D G3DSA:3.30.450.20 60 273 1.8E-37 T 13-10-2018 BMD_2455 12450c00aba71659bb05b487d927fd2b 641 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 429 610 3.0E-49 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 SUPERFAMILY SSF52794 410 488 2.41E-12 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 SUPERFAMILY SSF63520 193 292 1.44E-10 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 SUPERFAMILY SSF63520 309 400 2.09E-19 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Gene3D G3DSA:1.10.1790.10 199 296 3.4E-9 T 13-10-2018 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Gene3D G3DSA:1.10.10.10 5 89 1.2E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Gene3D G3DSA:3.40.930.10 534 683 3.8E-13 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Pfam PF08279 HTH domain 8 50 2.3E-8 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Pfam PF08279 HTH domain 95 148 6.8E-6 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 SUPERFAMILY SSF55804 545 682 1.7E-15 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Pfam PF00874 PRD domain 313 399 3.7E-17 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Pfam PF00874 PRD domain 207 289 1.3E-8 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 552 681 7.8E-13 T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Gene3D G3DSA:3.40.50.2300 410 496 6.3E-13 T 13-10-2018 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 412 474 2.0E-7 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BMD_0197 f58b5632d56e4b5f45753360cd34ec23 696 Gene3D G3DSA:1.10.1790.10 306 401 1.4E-16 T 13-10-2018 BMD_3491 bb737d869e259bf4aca107cd8533e491 285 Gene3D G3DSA:3.30.750.24 162 278 1.8E-34 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3491 bb737d869e259bf4aca107cd8533e491 285 Pfam PF01740 STAS domain 168 270 1.2E-15 T 13-10-2018 IPR002645 STAS domain BMD_3491 bb737d869e259bf4aca107cd8533e491 285 SUPERFAMILY SSF52091 165 273 1.06E-17 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2812 0fa516d4be7536d4a8f0587d8cf2dc41 393 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 80 6.1E-21 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 BMD_2812 0fa516d4be7536d4a8f0587d8cf2dc41 393 Pfam PF07670 Nucleoside recognition 91 188 1.3E-6 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_2812 0fa516d4be7536d4a8f0587d8cf2dc41 393 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 391 2.2E-57 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 BMD_5176 de92a8d941f92c88d402419278f10043 149 SUPERFAMILY SSF50814 10 146 1.71E-33 T 13-10-2018 IPR012674 Calycin BMD_5176 de92a8d941f92c88d402419278f10043 149 Gene3D G3DSA:2.40.128.20 2 149 1.5E-43 T 13-10-2018 IPR012674 Calycin BMD_5176 de92a8d941f92c88d402419278f10043 149 Pfam PF09148 Domain of unknown function (DUF1934) 16 142 2.5E-32 T 13-10-2018 IPR015231 Protein of unknown function DUF1934 BMD_0094 2022700ae4bd864667c679a9fce92070 193 Pfam PF00117 Glutamine amidotransferase class-I 4 185 6.2E-58 T 13-10-2018 IPR017926 Glutamine amidotransferase BMD_0094 2022700ae4bd864667c679a9fce92070 193 Gene3D G3DSA:3.40.50.880 1 189 2.3E-63 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 2.3E-13 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 2.3E-13 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 2.3E-13 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 SUPERFAMILY SSF52317 1 188 1.3E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0094 2022700ae4bd864667c679a9fce92070 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 186 4.4E-90 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00097 Anthranilate synthase component II signature 47 56 4.8E-35 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00097 Anthranilate synthase component II signature 119 131 4.8E-35 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00097 Anthranilate synthase component II signature 164 177 4.8E-35 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00097 Anthranilate synthase component II signature 74 85 4.8E-35 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00097 Anthranilate synthase component II signature 99 107 4.8E-35 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00097 Anthranilate synthase component II signature 2 16 4.8E-35 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 2.7E-7 T 13-10-2018 BMD_0094 2022700ae4bd864667c679a9fce92070 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 2.7E-7 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 PRINTS PR00988 Uridine kinase signature 136 146 4.4E-35 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 PRINTS PR00988 Uridine kinase signature 80 95 4.4E-35 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 PRINTS PR00988 Uridine kinase signature 35 46 4.4E-35 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 PRINTS PR00988 Uridine kinase signature 172 185 4.4E-35 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 PRINTS PR00988 Uridine kinase signature 5 22 4.4E-35 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 PRINTS PR00988 Uridine kinase signature 150 161 4.4E-35 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 SMART SM00382 4 154 0.0029 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 Gene3D G3DSA:3.40.50.300 3 210 2.4E-65 T 13-10-2018 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 TIGRFAM TIGR00235 udk: uridine kinase 4 206 6.0E-90 T 13-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 SUPERFAMILY SSF52540 3 197 2.29E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 192 6.9E-41 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 BMD_4589 b4435128bf6a60544cb3a0e43a86113f 211 Hamap MF_00551 Uridine kinase [udk]. 2 206 41.099 T 13-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 BMD_5229 aea99adddc6e8e43fb58c605116764de 483 Pfam PF09154 Domain of unknown function (DUF1939) 426 480 6.0E-5 T 13-10-2018 IPR015237 Alpha-amylase C-terminal, prokaryotic GO:0004553 BMD_5229 aea99adddc6e8e43fb58c605116764de 483 SMART SM00642 5 391 9.4E-67 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_5229 aea99adddc6e8e43fb58c605116764de 483 Gene3D G3DSA:2.60.40.1180 397 483 1.1E-34 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_5229 aea99adddc6e8e43fb58c605116764de 483 Pfam PF00128 Alpha amylase, catalytic domain 32 373 2.3E-32 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_5229 aea99adddc6e8e43fb58c605116764de 483 SUPERFAMILY SSF51445 6 375 4.45E-102 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_5229 aea99adddc6e8e43fb58c605116764de 483 PIRSF PIRSF001021 1 483 1.2E-220 T 13-10-2018 IPR013776 Alpha-amylase, thermostable GO:0004553|GO:0005509|GO:0005975 KEGG: 00500+3.2.1.1 BMD_5229 aea99adddc6e8e43fb58c605116764de 483 Gene3D G3DSA:3.20.20.80 6 372 4.1E-160 T 13-10-2018 BMD_5229 aea99adddc6e8e43fb58c605116764de 483 SUPERFAMILY SSF51011 395 482 2.01E-35 T 13-10-2018 BMD_5229 aea99adddc6e8e43fb58c605116764de 483 Gene3D G3DSA:2.40.30.140 104 207 4.1E-160 T 13-10-2018 BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 Pfam PF03471 Transporter associated domain 356 430 4.7E-13 T 13-10-2018 IPR005170 Transporter-associated domain BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 SMART SM01091 355 432 6.7E-17 T 13-10-2018 IPR005170 Transporter-associated domain BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 SUPERFAMILY SSF56176 353 430 2.7E-13 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 Gene3D G3DSA:3.10.580.10 195 348 4.4E-51 T 13-10-2018 BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 Gene3D G3DSA:3.30.465.10 349 434 5.4E-14 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 SUPERFAMILY SSF54631 204 342 1.89E-28 T 13-10-2018 BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 Pfam PF00571 CBS domain 293 339 5.1E-5 T 13-10-2018 IPR000644 CBS domain BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 Pfam PF00571 CBS domain 218 272 5.6E-6 T 13-10-2018 IPR000644 CBS domain BMD_1170 f19a2ae92264653ee5e2f3717582542c 451 Pfam PF01595 Domain of unknown function DUF21 7 201 5.6E-49 T 13-10-2018 IPR002550 CNNM, transmembrane domain BMD_1932 a86af3cf8111d671b25357691611897d 243 Pfam PF01522 Polysaccharide deacetylase 46 157 8.4E-34 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_1932 a86af3cf8111d671b25357691611897d 243 SUPERFAMILY SSF88713 40 240 1.56E-63 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_1932 a86af3cf8111d671b25357691611897d 243 Gene3D G3DSA:3.20.20.370 29 241 1.2E-73 T 13-10-2018 BMD_5014 56b154d7b149aeab9d8a54f06a095559 208 SMART SM00014 58 166 1.3E-16 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_5014 56b154d7b149aeab9d8a54f06a095559 208 Gene3D G3DSA:1.20.144.10 3 91 5.6E-7 T 13-10-2018 BMD_5014 56b154d7b149aeab9d8a54f06a095559 208 Gene3D G3DSA:1.20.144.10 92 179 5.0E-18 T 13-10-2018 BMD_5014 56b154d7b149aeab9d8a54f06a095559 208 SUPERFAMILY SSF48317 2 178 3.01E-37 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BMD_5014 56b154d7b149aeab9d8a54f06a095559 208 Pfam PF01569 PAP2 superfamily 59 169 6.3E-22 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_1074 a3e833a07f7375c866639bdf6ac44839 268 Pfam PF01380 SIS domain 120 231 3.3E-15 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_1074 a3e833a07f7375c866639bdf6ac44839 268 SUPERFAMILY SSF46689 3 77 1.79E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1074 a3e833a07f7375c866639bdf6ac44839 268 Gene3D G3DSA:3.40.50.10490 93 259 1.0E-28 T 13-10-2018 BMD_1074 a3e833a07f7375c866639bdf6ac44839 268 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 72 3.6E-11 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BMD_1074 a3e833a07f7375c866639bdf6ac44839 268 Gene3D G3DSA:1.10.10.10 3 77 6.0E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1074 a3e833a07f7375c866639bdf6ac44839 268 SUPERFAMILY SSF53697 103 245 4.0E-23 T 13-10-2018 BMD_3151 2e0d1f44a6ab31ac00030779c6004500 259 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 254 16.576 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BMD_3151 2e0d1f44a6ab31ac00030779c6004500 259 Pfam PF02673 Bacitracin resistance protein BacA 6 249 1.4E-73 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 SUPERFAMILY SSF52313 6 233 1.01E-101 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 Gene3D G3DSA:3.40.50.10490 8 219 4.4E-98 T 13-10-2018 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 9.3E-115 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 Gene3D G3DSA:1.10.287.610 103 150 4.4E-98 T 13-10-2018 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 Pfam PF00318 Ribosomal protein S2 9 224 7.0E-104 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 228 44.326 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 PRINTS PR00395 Ribosomal protein S2 signature 87 104 5.6E-41 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 PRINTS PR00395 Ribosomal protein S2 signature 175 186 5.6E-41 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 PRINTS PR00395 Ribosomal protein S2 signature 6 24 5.6E-41 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 PRINTS PR00395 Ribosomal protein S2 signature 37 46 5.6E-41 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 PRINTS PR00395 Ribosomal protein S2 signature 158 175 5.6E-41 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4152 f5dc6e0d7ba5ce8e9c17da4a99eb029e 239 PRINTS PR00395 Ribosomal protein S2 signature 196 210 5.6E-41 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_2758 10672c55ebd8f0e8e22074f6d11c145d 266 Pfam PF11155 Domain of unknown function (DUF2935) 9 116 8.9E-19 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 BMD_2758 10672c55ebd8f0e8e22074f6d11c145d 266 Pfam PF11155 Domain of unknown function (DUF2935) 129 247 1.2E-27 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 BMD_2758 10672c55ebd8f0e8e22074f6d11c145d 266 SUPERFAMILY SSF158430 5 125 1.44E-29 T 13-10-2018 BMD_2758 10672c55ebd8f0e8e22074f6d11c145d 266 SUPERFAMILY SSF158430 127 260 1.7E-40 T 13-10-2018 BMD_2758 10672c55ebd8f0e8e22074f6d11c145d 266 Gene3D G3DSA:1.20.1260.120 1 266 4.0E-93 T 13-10-2018 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 SUPERFAMILY SSF158472 177 227 2.09E-5 T 13-10-2018 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 SMART SM00304 176 230 0.003 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 SUPERFAMILY SSF55874 297 446 9.43E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 Gene3D G3DSA:3.30.565.10 301 450 4.4E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 448 1.9E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 SUPERFAMILY SSF47384 214 296 1.65E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 232 296 5.5E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 7.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 7.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 7.2E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 SMART SM00387 340 450 1.4E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 SMART SM00388 231 298 3.8E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1763 74b8a2b51ff50c9b875ee425aa64af99 450 Gene3D G3DSA:1.10.287.130 180 298 4.3E-25 T 13-10-2018 BMD_3322 7d5b25a8c02404e806e22b2388751e05 262 SUPERFAMILY SSF161098 65 248 1.11E-29 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3322 7d5b25a8c02404e806e22b2388751e05 262 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 254 5.7E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_3322 7d5b25a8c02404e806e22b2388751e05 262 Gene3D G3DSA:1.10.3720.10 61 255 4.2E-24 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1886 0ce12371e1274b43ed6e43acbf7e7023 651 Gene3D G3DSA:3.20.20.80 1 386 1.3E-116 T 13-10-2018 BMD_1886 0ce12371e1274b43ed6e43acbf7e7023 651 SUPERFAMILY SSF51445 3 381 2.26E-96 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_1886 0ce12371e1274b43ed6e43acbf7e7023 651 Gene3D G3DSA:3.40.50.880 390 605 1.3E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1886 0ce12371e1274b43ed6e43acbf7e7023 651 Pfam PF02449 Beta-galactosidase 6 379 3.3E-119 T 13-10-2018 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BMD_1886 0ce12371e1274b43ed6e43acbf7e7023 651 PIRSF PIRSF001084 1 646 8.9E-178 T 13-10-2018 IPR003476 Glycoside hydrolase, family 42 GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BMD_1886 0ce12371e1274b43ed6e43acbf7e7023 651 Pfam PF08532 Beta-galactosidase trimerisation domain 393 599 6.1E-52 T 13-10-2018 IPR013738 Beta-galactosidase trimerisation GO:0004565|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BMD_1886 0ce12371e1274b43ed6e43acbf7e7023 651 SUPERFAMILY SSF52317 391 599 3.43E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 SUPERFAMILY SSF52821 2 110 5.37E-19 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 Pfam PF00581 Rhodanese-like domain 7 105 6.6E-11 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 Gene3D G3DSA:3.60.15.10 119 355 1.3E-47 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 Gene3D G3DSA:3.40.250.10 2 111 8.2E-19 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 SMART SM00849 130 294 4.9E-28 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 SUPERFAMILY SSF56281 124 369 1.76E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 Pfam PF00753 Metallo-beta-lactamase superfamily 130 294 6.4E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_3344 73ef35db1b0a9ef064b7e5d40dad619c 375 SMART SM00450 7 109 1.2E-12 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 Gene3D G3DSA:1.10.10.10 129 227 1.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 SMART SM00862 150 224 1.4E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 SMART SM00448 7 117 4.2E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 Pfam PF00072 Response regulator receiver domain 9 118 6.1E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 SUPERFAMILY SSF52172 3 124 2.28E-39 T 13-10-2018 IPR011006 CheY-like superfamily BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 Gene3D G3DSA:3.40.50.2300 1 127 1.4E-35 T 13-10-2018 BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 224 2.2E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_5233 ad879de740d26498b184e31aee5c1ba5 227 SUPERFAMILY SSF46894 132 225 2.44E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 SUPERFAMILY SSF51338 14 356 2.59E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 Pfam PF01979 Amidohydrolase family 68 342 9.6E-30 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 TIGRFAM TIGR01178 ade: adenine deaminase 22 575 3.1E-199 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 Pfam PF13382 Adenine deaminase C-terminal domain 404 572 1.6E-64 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 Hamap MF_01518 Adenine deaminase [ade]. 22 575 39.227 T 13-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 Gene3D G3DSA:2.30.40.10 14 352 1.5E-129 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 Gene3D G3DSA:3.20.20.140 72 315 1.5E-129 T 13-10-2018 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 Pfam PF00449 Urease alpha-subunit, N-terminal domain 15 63 1.3E-4 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_0370 67e64175d7743d72a718566bcc0b2bef 578 SUPERFAMILY SSF51556 73 320 1.68E-41 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_0141 6a508786dba87f5d827bffc095f94c57 144 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 2.7E-53 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 SUPERFAMILY SSF54686 1 137 1.96E-59 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 1.8E-63 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 Gene3D G3DSA:3.90.1170.10 1 143 1.1E-55 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 41.202 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.4E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.4E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.4E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.4E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0141 6a508786dba87f5d827bffc095f94c57 144 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 Gene3D G3DSA:3.40.140.10 2 136 1.4E-44 T 13-10-2018 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 100 2.2E-20 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 PIRSF PIRSF006769 2 361 4.1E-132 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 Gene3D G3DSA:3.40.430.10 137 362 1.6E-73 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 356 5.8E-122 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 SUPERFAMILY SSF53597 145 360 3.11E-59 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 357 3.8E-67 T 13-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 SUPERFAMILY SSF53927 4 143 7.74E-46 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BMD_1919 871e7b780fb14cbff79293187bc1fa9f 363 Pfam PF01872 RibD C-terminal domain 148 354 9.4E-54 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 BMD_4197 9c6811c4d2d191d1fd9abc4994dcae3e 246 SUPERFAMILY SSF75217 1 243 1.15E-102 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases BMD_4197 9c6811c4d2d191d1fd9abc4994dcae3e 246 Gene3D G3DSA:1.10.1270.20 165 246 8.4E-36 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BMD_4197 9c6811c4d2d191d1fd9abc4994dcae3e 246 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 234 4.5E-105 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BMD_4197 9c6811c4d2d191d1fd9abc4994dcae3e 246 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 246 113.23 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BMD_4197 9c6811c4d2d191d1fd9abc4994dcae3e 246 PIRSF PIRSF000386 1 246 5.2E-107 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BMD_4197 9c6811c4d2d191d1fd9abc4994dcae3e 246 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 4.5E-75 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BMD_4197 9c6811c4d2d191d1fd9abc4994dcae3e 246 Gene3D G3DSA:3.40.1280.10 1 164 2.9E-69 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 Gene3D G3DSA:3.30.300.20 59 140 9.6E-24 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 Gene3D G3DSA:3.30.30.80 1 56 1.9E-17 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 SMART SM00393 126 205 2.7E-22 T 13-10-2018 IPR001374 R3H domain GO:0003676 BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 SUPERFAMILY SSF82708 147 204 1.18E-8 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 Pfam PF14804 Jag N-terminus 6 55 1.7E-17 T 13-10-2018 IPR032782 Jag, N-terminal BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 Pfam PF13083 KH domain 66 128 8.0E-14 T 13-10-2018 BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 SMART SM01245 5 57 4.9E-19 T 13-10-2018 IPR032782 Jag, N-terminal BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 Gene3D G3DSA:3.30.1370.50 141 209 3.2E-23 T 13-10-2018 IPR036867 R3H domain superfamily GO:0003676 BMD_5269 76d809d1d4c0f8b512b436a244294c6b 209 Pfam PF01424 R3H domain 144 202 4.4E-16 T 13-10-2018 IPR001374 R3H domain GO:0003676 BMD_1621 62e8af35c3373aa706743b71a249e1be 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 185 3.8E-15 T 13-10-2018 BMD_1621 62e8af35c3373aa706743b71a249e1be 223 SUPERFAMILY SSF56784 1 217 5.87E-41 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1621 62e8af35c3373aa706743b71a249e1be 223 Gene3D G3DSA:1.10.150.240 16 89 7.5E-33 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_1621 62e8af35c3373aa706743b71a249e1be 223 Gene3D G3DSA:3.40.50.1000 5 205 7.5E-33 T 13-10-2018 IPR023214 HAD superfamily BMD_1517 2c161a76668853358d6238a2b6a31970 504 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 24 504 74.839 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 351 377 3.0E-42 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 260 276 3.0E-42 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 179 3.0E-42 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 190 218 3.0E-42 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 242 259 3.0E-42 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 SUPERFAMILY SSF55347 205 504 1.21E-98 T 13-10-2018 BMD_1517 2c161a76668853358d6238a2b6a31970 504 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 25 504 4.1E-165 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 SUPERFAMILY SSF51735 18 213 4.33E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1517 2c161a76668853358d6238a2b6a31970 504 Gene3D G3DSA:3.40.50.720 22 198 1.9E-59 T 13-10-2018 BMD_1517 2c161a76668853358d6238a2b6a31970 504 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 215 503 4.3E-99 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 28 210 2.2E-61 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 PIRSF PIRSF000110 9 504 7.5E-177 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1517 2c161a76668853358d6238a2b6a31970 504 Gene3D G3DSA:3.30.360.10 199 504 5.2E-109 T 13-10-2018 BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 Gene3D G3DSA:3.40.50.300 3 222 3.5E-66 T 13-10-2018 BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 SUPERFAMILY SSF50331 237 353 2.33E-26 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 SMART SM00382 29 212 1.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 Gene3D G3DSA:2.40.50.940 223 346 3.7E-29 T 13-10-2018 BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 Gene3D G3DSA:2.40.50.140 282 337 3.7E-29 T 13-10-2018 BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 Pfam PF08402 TOBE domain 275 345 6.6E-8 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 SUPERFAMILY SSF52540 4 244 4.09E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0462 5b66cf908ebcc5cb197821b10c7abe45 369 Pfam PF00005 ABC transporter 21 162 1.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 Gene3D G3DSA:3.30.160.70 13 72 6.7E-10 T 13-10-2018 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 126 132 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 SUPERFAMILY SSF46767 75 157 3.27E-28 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 76 156 5.9E-33 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 SUPERFAMILY SSF53155 13 80 1.63E-11 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 77 157 9.1E-29 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 157 36.676 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 BMD_1228 6cbb286e3ba34edeafc820d259365cd4 167 Gene3D G3DSA:1.10.10.10 75 161 1.8E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4518 a552e9fed0db15a2c56adb97f11b0e27 259 Pfam PF00005 ABC transporter 22 170 1.6E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4518 a552e9fed0db15a2c56adb97f11b0e27 259 SUPERFAMILY SSF52540 4 231 7.89E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4518 a552e9fed0db15a2c56adb97f11b0e27 259 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4518 a552e9fed0db15a2c56adb97f11b0e27 259 SMART SM00382 31 220 2.6E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4518 a552e9fed0db15a2c56adb97f11b0e27 259 Gene3D G3DSA:3.40.50.300 1 247 3.2E-67 T 13-10-2018 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 402 6.6E-130 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 Gene3D G3DSA:3.40.50.720 1 197 7.9E-58 T 13-10-2018 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 SUPERFAMILY SSF51735 3 194 3.4E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 179 3.2E-38 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 201 291 4.7E-29 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 PIRSF PIRSF500136 1 407 2.4E-148 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 Gene3D G3DSA:3.40.50.720 200 407 1.5E-59 T 13-10-2018 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 PIRSF PIRSF000124 3 407 1.6E-67 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 SUPERFAMILY SSF52413 305 406 4.45E-22 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 SMART SM00984 313 407 6.0E-27 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 406 9.9E-21 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_3877 2432213275bb6b518cd69cdd781ddc19 407 SUPERFAMILY SSF48179 200 293 4.76E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4736 160dd5697182c30e11f7738980f29509 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.7E-41 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.7E-41 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.7E-41 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 Gene3D G3DSA:1.10.1900.20 56 118 1.0E-28 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 1.0E-11 T 13-10-2018 BMD_4736 160dd5697182c30e11f7738980f29509 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 8.0E-52 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.522 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 SUPERFAMILY SSF74731 2 115 1.29E-50 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4736 160dd5697182c30e11f7738980f29509 119 Gene3D G3DSA:1.10.720.90 2 55 1.7E-26 T 13-10-2018 BMD_4736 160dd5697182c30e11f7738980f29509 119 Pfam PF00453 Ribosomal protein L20 3 109 2.6E-50 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_3426 5203a486920fe35a5267256ea53f10fb 395 Pfam PF00480 ROK family 84 373 3.8E-54 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BMD_3426 5203a486920fe35a5267256ea53f10fb 395 Gene3D G3DSA:1.10.10.10 11 76 3.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3426 5203a486920fe35a5267256ea53f10fb 395 Gene3D G3DSA:3.30.420.40 81 374 3.8E-86 T 13-10-2018 BMD_3426 5203a486920fe35a5267256ea53f10fb 395 ProSitePatterns PS01125 ROK family signature. 212 239 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BMD_3426 5203a486920fe35a5267256ea53f10fb 395 SUPERFAMILY SSF53067 80 375 1.46E-38 T 13-10-2018 BMD_3426 5203a486920fe35a5267256ea53f10fb 395 SUPERFAMILY SSF46785 8 73 3.11E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3426 5203a486920fe35a5267256ea53f10fb 395 Gene3D G3DSA:3.30.420.40 203 355 3.8E-86 T 13-10-2018 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 SUPERFAMILY SSF55874 315 484 6.81E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 464 1.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 439 1.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 425 1.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 483 1.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 374 485 4.6E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 SMART SM00387 374 486 7.2E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 Gene3D G3DSA:1.10.287.130 254 328 5.0E-16 T 13-10-2018 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 Gene3D G3DSA:3.30.565.10 330 487 6.5E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 SUPERFAMILY SSF158472 200 248 1.02E-6 T 13-10-2018 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 SUPERFAMILY SSF47384 244 326 1.82E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 324 1.0E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 SMART SM00388 259 326 2.6E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 Gene3D G3DSA:1.20.1480.50 159 253 6.8E-6 T 13-10-2018 BMD_3442 10bbd06f9831ab976d9cc205994d99cd 487 SMART SM00304 198 251 3.1E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 SUPERFAMILY SSF52518 294 477 9.82E-57 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 Gene3D G3DSA:3.40.50.970 315 489 6.6E-64 T 13-10-2018 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 ProSitePatterns PS00801 Transketolase signature 1. 28 47 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 4 623 1.0E-293 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 Pfam PF02780 Transketolase, C-terminal domain 493 615 2.5E-36 T 13-10-2018 IPR033248 Transketolase, C-terminal domain BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 3 278 1.2E-117 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 SUPERFAMILY SSF52922 490 623 2.36E-38 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 SUPERFAMILY SSF52518 14 359 1.84E-72 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 SMART SM00861 316 481 3.9E-61 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 2 624 44.808 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 Pfam PF02779 Transketolase, pyrimidine binding domain 315 477 4.5E-38 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 ProSitePatterns PS00802 Transketolase signature 2. 422 438 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4441 4f46f2b427a5ded93419e8a21a0d7e3a 633 Gene3D G3DSA:3.40.50.920 493 628 7.0E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_4245 6d1942d0856feef8264e247b01b3161f 180 Gene3D G3DSA:3.40.50.2020 2 180 6.0E-62 T 13-10-2018 BMD_4245 6d1942d0856feef8264e247b01b3161f 180 SUPERFAMILY SSF53271 6 174 8.78E-44 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_4245 6d1942d0856feef8264e247b01b3161f 180 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 4 179 39.372 T 13-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 BMD_4245 6d1942d0856feef8264e247b01b3161f 180 Pfam PF00156 Phosphoribosyl transferase domain 6 152 1.5E-24 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 Gene3D G3DSA:3.90.228.20 215 514 1.1E-225 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 SUPERFAMILY SSF53795 214 518 6.87E-135 T 13-10-2018 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 Pfam PF01293 Phosphoenolpyruvate carboxykinase 19 482 6.3E-225 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 Gene3D G3DSA:2.170.8.10 38 331 1.1E-225 T 13-10-2018 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 PIRSF PIRSF006294 2 528 4.7E-240 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 SUPERFAMILY SSF68923 5 212 8.55E-76 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 4 529 2.8E-246 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 Gene3D G3DSA:3.40.449.10 28 214 1.1E-225 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 BMD_4848 c757d6564878881fb6fea9b6591faf6c 529 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 12 529 55.04 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BMD_3237 9d12b5f5c9672095fb79a54048e2c62d 386 SUPERFAMILY SSF89260 94 202 4.32E-8 T 13-10-2018 BMD_3237 9d12b5f5c9672095fb79a54048e2c62d 386 Gene3D G3DSA:2.60.40.10 304 379 6.8E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_3237 9d12b5f5c9672095fb79a54048e2c62d 386 Gene3D G3DSA:2.60.40.10 221 297 3.4E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_3237 9d12b5f5c9672095fb79a54048e2c62d 386 Gene3D G3DSA:2.60.120.380 93 215 4.7E-14 T 13-10-2018 BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 3 182 25.605 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 179 1.2E-51 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 SUPERFAMILY SSF50715 1 188 4.53E-53 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 99 182 1.5E-24 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 3 91 2.0E-24 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 Gene3D G3DSA:2.170.120.20 97 188 4.1E-28 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 Gene3D G3DSA:2.40.240.10 2 94 1.6E-26 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BMD_0069 bcb67e76b398aab0a434511ad0c3ddd1 209 Pfam PF01386 Ribosomal L25p family 5 91 2.6E-22 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BMD_3597 da53e3ece6a4578dbceec16bd6854a0d 369 Gene3D G3DSA:3.30.360.10 140 355 1.2E-103 T 13-10-2018 BMD_3597 da53e3ece6a4578dbceec16bd6854a0d 369 Gene3D G3DSA:3.40.50.720 6 348 1.2E-103 T 13-10-2018 BMD_3597 da53e3ece6a4578dbceec16bd6854a0d 369 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 122 3.0E-14 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_3597 da53e3ece6a4578dbceec16bd6854a0d 369 SUPERFAMILY SSF51735 4 160 9.03E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3597 da53e3ece6a4578dbceec16bd6854a0d 369 SUPERFAMILY SSF55347 134 298 8.28E-15 T 13-10-2018 BMD_2105 29c6ff4c0d9a65166062fc2eb133caed 337 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 123 1.0E-30 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_2105 29c6ff4c0d9a65166062fc2eb133caed 337 Gene3D G3DSA:3.30.360.10 128 333 1.4E-84 T 13-10-2018 BMD_2105 29c6ff4c0d9a65166062fc2eb133caed 337 SUPERFAMILY SSF51735 4 150 6.43E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2105 29c6ff4c0d9a65166062fc2eb133caed 337 SUPERFAMILY SSF55347 132 311 1.37E-22 T 13-10-2018 BMD_2105 29c6ff4c0d9a65166062fc2eb133caed 337 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 200 1.2E-7 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BMD_2105 29c6ff4c0d9a65166062fc2eb133caed 337 Gene3D G3DSA:3.40.50.720 7 317 1.4E-84 T 13-10-2018 BMD_0140 333f74970d252288b5a7197528688f48 218 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 205 38.7 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BMD_0140 333f74970d252288b5a7197528688f48 218 Gene3D G3DSA:3.30.300.20 17 106 2.4E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_0140 333f74970d252288b5a7197528688f48 218 SMART SM00322 59 124 3.5E-8 T 13-10-2018 IPR004087 K Homology domain GO:0003676 BMD_0140 333f74970d252288b5a7197528688f48 218 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 201 2.9E-39 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0140 333f74970d252288b5a7197528688f48 218 Pfam PF07650 KH domain 37 109 2.6E-20 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0140 333f74970d252288b5a7197528688f48 218 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 4.9E-97 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BMD_0140 333f74970d252288b5a7197528688f48 218 ProSitePatterns PS00548 Ribosomal protein S3 signature. 162 196 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0140 333f74970d252288b5a7197528688f48 218 Gene3D G3DSA:3.30.1140.32 107 207 1.0E-40 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0140 333f74970d252288b5a7197528688f48 218 SUPERFAMILY SSF54821 107 205 5.62E-38 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0140 333f74970d252288b5a7197528688f48 218 SUPERFAMILY SSF54814 2 105 1.86E-38 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BMD_1353 c1ff70f20e2401374e068725956fc951 351 PRINTS PR01166 Cytochrome c oxidase subunit II signature 87 99 1.1E-8 T 13-10-2018 BMD_1353 c1ff70f20e2401374e068725956fc951 351 PRINTS PR01166 Cytochrome c oxidase subunit II signature 215 232 1.1E-8 T 13-10-2018 BMD_1353 c1ff70f20e2401374e068725956fc951 351 PRINTS PR01166 Cytochrome c oxidase subunit II signature 197 214 1.1E-8 T 13-10-2018 BMD_1353 c1ff70f20e2401374e068725956fc951 351 PRINTS PR01166 Cytochrome c oxidase subunit II signature 99 119 1.1E-8 T 13-10-2018 BMD_1353 c1ff70f20e2401374e068725956fc951 351 SUPERFAMILY SSF46626 249 350 3.25E-18 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 34 242 2.5E-56 T 13-10-2018 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 151 233 1.5E-15 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 SUPERFAMILY SSF81464 17 120 2.45E-21 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 Gene3D G3DSA:2.60.40.2600 124 351 7.0E-66 T 13-10-2018 BMD_1353 c1ff70f20e2401374e068725956fc951 351 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 172 226 - T 13-10-2018 IPR001505 Copper centre Cu(A) GO:0005507 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 Gene3D G3DSA:1.10.287.90 28 119 1.0E-24 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 50 110 1.3E-8 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 Pfam PF00034 Cytochrome c 257 349 1.4E-11 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1353 c1ff70f20e2401374e068725956fc951 351 SUPERFAMILY SSF49503 125 275 8.3E-41 T 13-10-2018 IPR008972 Cupredoxin BMD_0326 d230e8c5adfa462df739c11274575cc0 197 SMART SM00014 58 167 2.6E-13 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_0326 d230e8c5adfa462df739c11274575cc0 197 SUPERFAMILY SSF48317 14 174 4.32E-36 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BMD_0326 d230e8c5adfa462df739c11274575cc0 197 Pfam PF01569 PAP2 superfamily 62 171 9.0E-19 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_0326 d230e8c5adfa462df739c11274575cc0 197 Gene3D G3DSA:1.20.144.10 88 195 4.8E-19 T 13-10-2018 BMD_2626 ed758404df5ad41c1d1f8c6fe91b652c 473 SUPERFAMILY SSF143968 311 462 9.02E-40 T 13-10-2018 BMD_2626 ed758404df5ad41c1d1f8c6fe91b652c 473 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 441 2.0E-154 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 BMD_2626 ed758404df5ad41c1d1f8c6fe91b652c 473 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 415 3.0E-114 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 BMD_2626 ed758404df5ad41c1d1f8c6fe91b652c 473 Gene3D G3DSA:3.40.1670.10 326 440 2.9E-27 T 13-10-2018 BMD_2626 ed758404df5ad41c1d1f8c6fe91b652c 473 SUPERFAMILY SSF50475 3 308 3.53E-85 T 13-10-2018 BMD_2626 ed758404df5ad41c1d1f8c6fe91b652c 473 Hamap MF_01985 Phenolic acid decarboxylase subunit C. 1 472 73.24 T 13-10-2018 IPR032902 Phenolic acid decarboxylase subunit C GO:0016831 BMD_3186 1660abbe6eb807b82610467c119b1123 252 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 22 244 1.2E-54 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related BMD_0374 44e4e39ea7ac91f9c60bfbca6c43c222 279 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 12 270 5.1E-62 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_0374 44e4e39ea7ac91f9c60bfbca6c43c222 279 PIRSF PIRSF035875 3 279 2.0E-80 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_0374 44e4e39ea7ac91f9c60bfbca6c43c222 279 Pfam PF03631 Virulence factor BrkB 22 273 2.9E-69 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_4372 395c0457f162786837a30ccc5705f426 116 TIGRFAM TIGR02839 spore_V_AE: stage V sporulation protein AE 3 116 1.2E-54 T 13-10-2018 IPR014204 Sporulation stage V, protein AE BMD_4372 395c0457f162786837a30ccc5705f426 116 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 2 111 2.6E-41 T 13-10-2018 IPR005562 SpoVA BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 SUPERFAMILY SSF141868 593 841 2.35E-84 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 Gene3D G3DSA:1.20.1480.50 319 409 1.3E-13 T 13-10-2018 BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 414 576 3.7E-34 T 13-10-2018 IPR000160 GGDEF domain BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 Gene3D G3DSA:3.20.20.450 592 842 3.8E-95 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 Pfam PF00563 EAL domain 595 830 3.9E-72 T 13-10-2018 IPR001633 EAL domain BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 SUPERFAMILY SSF55073 421 580 2.35E-45 T 13-10-2018 IPR029787 Nucleotide cyclase BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 Pfam PF00990 Diguanylate cyclase, GGDEF domain 416 573 2.3E-42 T 13-10-2018 IPR000160 GGDEF domain BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 Pfam PF00672 HAMP domain 352 395 6.8E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 SMART SM00052 588 835 3.3E-99 T 13-10-2018 IPR001633 EAL domain BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 SUPERFAMILY SSF158472 352 401 1.31E-8 T 13-10-2018 BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 SMART SM00304 351 403 2.5E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 SMART SM00267 405 578 2.2E-53 T 13-10-2018 IPR000160 GGDEF domain BMD_1088 a5c8edfd8022e4bf9caed17009d94269 843 Gene3D G3DSA:3.30.70.270 411 591 2.9E-52 T 13-10-2018 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 Pfam PF01584 CheW-like domain 18 152 6.0E-37 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 Gene3D G3DSA:3.40.50.2300 159 300 1.9E-24 T 13-10-2018 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 SUPERFAMILY SSF50341 7 153 1.96E-38 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 Pfam PF00072 Response regulator receiver domain 176 296 3.6E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 SMART SM00448 174 296 1.3E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 Gene3D G3DSA:2.30.30.40 19 143 2.4E-37 T 13-10-2018 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 PIRSF PIRSF002867 1 301 9.0E-104 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 Gene3D G3DSA:2.40.50.180 34 149 2.4E-37 T 13-10-2018 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 SMART SM00260 13 149 5.3E-35 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BMD_1296 aa35e04ee3c40083a7fa5f24e86e499b 301 SUPERFAMILY SSF52172 171 298 6.69E-24 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 4 348 2.7E-140 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 SUPERFAMILY SSF52021 1 139 4.71E-47 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 253 270 6.1E-32 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 167 181 6.1E-32 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 278 289 6.1E-32 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 236 252 6.1E-32 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 206 220 6.1E-32 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 SMART SM01097 1 132 1.3E-63 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 351 44.216 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 Gene3D G3DSA:3.50.30.20 1 157 2.8E-50 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 Pfam PF00117 Glutamine amidotransferase class-I 169 345 1.7E-45 T 13-10-2018 IPR017926 Glutamine amidotransferase BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00096 Glutamine amidotransferase superfamily signature 322 335 1.6E-11 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 247 1.6E-11 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 PRINTS PR00096 Glutamine amidotransferase superfamily signature 209 218 1.6E-11 T 13-10-2018 BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 SUPERFAMILY SSF52317 148 348 9.17E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 Gene3D G3DSA:3.40.50.880 159 352 1.7E-33 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0682 2bbbcfe988368e22f5c49048f48ce4dd 357 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 3 129 9.5E-46 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 Pfam PF01312 FlhB HrpN YscU SpaS Family 13 353 1.5E-129 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 308 329 3.8E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 234 251 3.8E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 16 38 3.8E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 214 232 3.8E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 278 293 3.8E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 Gene3D G3DSA:3.40.1690.10 224 360 3.5E-56 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 14 359 1.5E-129 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 BMD_4162 19d07b48258f6cb234dc3db08624fbc2 360 SUPERFAMILY SSF160544 250 357 1.26E-40 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BMD_1796 25651de8ceacd0045eb56b11978411cd 261 SUPERFAMILY SSF51735 6 251 1.09E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1796 25651de8ceacd0045eb56b11978411cd 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 2.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 251 8.4E-66 T 13-10-2018 BMD_1796 25651de8ceacd0045eb56b11978411cd 261 Gene3D G3DSA:3.40.50.720 1 261 1.9E-90 T 13-10-2018 BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1796 25651de8ceacd0045eb56b11978411cd 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0307 b53089e49d3b2291e944767a44019a84 273 Gene3D G3DSA:1.10.1660.10 1 117 2.4E-24 T 13-10-2018 BMD_0307 b53089e49d3b2291e944767a44019a84 273 SMART SM00422 5 75 1.8E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_0307 b53089e49d3b2291e944767a44019a84 273 Gene3D G3DSA:3.20.80.10 120 273 4.6E-15 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_0307 b53089e49d3b2291e944767a44019a84 273 Pfam PF13411 MerR HTH family regulatory protein 5 73 2.7E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_0307 b53089e49d3b2291e944767a44019a84 273 SUPERFAMILY SSF46955 5 107 1.72E-25 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_0307 b53089e49d3b2291e944767a44019a84 273 SUPERFAMILY SSF55136 123 271 6.8E-21 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_0882 bd6c82c2310d86021e0dafb885754ed0 453 Gene3D G3DSA:3.30.1360.60 3 78 5.5E-22 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_0882 bd6c82c2310d86021e0dafb885754ed0 453 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_0882 bd6c82c2310d86021e0dafb885754ed0 453 Pfam PF02378 Phosphotransferase system, EIIC 118 387 1.3E-39 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_0882 bd6c82c2310d86021e0dafb885754ed0 453 SUPERFAMILY SSF55604 8 82 1.29E-17 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_0882 bd6c82c2310d86021e0dafb885754ed0 453 Pfam PF00367 phosphotransferase system, EIIB 12 42 9.5E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_1756 2326aad3294336b378fb7f4fe674594f 395 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 216 381 2.9E-38 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1756 2326aad3294336b378fb7f4fe674594f 395 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 2 383 2.4E-97 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1756 2326aad3294336b378fb7f4fe674594f 395 Gene3D G3DSA:3.30.300.210 234 385 2.5E-39 T 13-10-2018 IPR038501 Spore germination GerAC superfamily BMD_1261 1e0406bcf183e9fd03db2deb621b2103 61 Pfam PF09953 Uncharacterized protein conserved in bacteria (DUF2187) 2 57 2.3E-28 T 13-10-2018 IPR018690 Protein of unknown function DUF2187 BMD_3452 3c48366d5ef10621b0412419567f2584 139 Pfam PF13673 Acetyltransferase (GNAT) domain 29 121 6.6E-13 T 13-10-2018 IPR000182 GNAT domain BMD_3452 3c48366d5ef10621b0412419567f2584 139 SUPERFAMILY SSF55729 13 126 5.74E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3452 3c48366d5ef10621b0412419567f2584 139 Gene3D G3DSA:3.40.630.30 1 131 3.5E-29 T 13-10-2018 BMD_2676 d21f14e439d3038113bbcb66b0008e3e 551 SUPERFAMILY SSF103473 27 526 4.19E-33 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2676 d21f14e439d3038113bbcb66b0008e3e 551 Pfam PF07690 Major Facilitator Superfamily 39 422 4.1E-24 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2676 d21f14e439d3038113bbcb66b0008e3e 551 Gene3D G3DSA:1.20.1250.20 17 203 1.5E-19 T 13-10-2018 BMD_0493 a8e7085d70546e015e1feb28f1c990d6 485 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 3 485 74.462 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 BMD_0493 a8e7085d70546e015e1feb28f1c990d6 485 Pfam PF00171 Aldehyde dehydrogenase family 17 481 1.3E-156 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_0493 a8e7085d70546e015e1feb28f1c990d6 485 Gene3D G3DSA:3.40.605.10 4 260 4.6E-92 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_0493 a8e7085d70546e015e1feb28f1c990d6 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_0493 a8e7085d70546e015e1feb28f1c990d6 485 SUPERFAMILY SSF53720 4 485 1.05E-157 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_0493 a8e7085d70546e015e1feb28f1c990d6 485 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 9 485 5.9E-187 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 BMD_0493 a8e7085d70546e015e1feb28f1c990d6 485 Gene3D G3DSA:3.40.309.10 261 484 2.2E-69 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_0880 680b411e81b5f52e014afb76337e5b42 301 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 4 297 42.204 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BMD_0880 680b411e81b5f52e014afb76337e5b42 301 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 187 204 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 BMD_0880 680b411e81b5f52e014afb76337e5b42 301 SUPERFAMILY SSF53697 8 250 1.82E-70 T 13-10-2018 BMD_0880 680b411e81b5f52e014afb76337e5b42 301 Pfam PF01380 SIS domain 127 197 2.8E-10 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0880 680b411e81b5f52e014afb76337e5b42 301 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 8 298 3.9E-130 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BMD_0880 680b411e81b5f52e014afb76337e5b42 301 Gene3D G3DSA:3.40.50.10490 2 220 2.6E-80 T 13-10-2018 BMD_0880 680b411e81b5f52e014afb76337e5b42 301 Gene3D G3DSA:1.10.8.1080 221 299 8.6E-30 T 13-10-2018 BMD_0387 9df7dee76115092995f22f5970b7ff8d 513 Gene3D G3DSA:3.20.130.10 309 494 3.7E-65 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BMD_0387 9df7dee76115092995f22f5970b7ff8d 513 PIRSF PIRSF001394 1 512 1.6E-196 T 13-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 BMD_0387 9df7dee76115092995f22f5970b7ff8d 513 SUPERFAMILY SSF117457 322 493 1.44E-51 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BMD_0387 9df7dee76115092995f22f5970b7ff8d 513 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 7 281 4.4E-62 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BMD_0387 9df7dee76115092995f22f5970b7ff8d 513 Pfam PF05683 Fumarase C-terminus 290 495 1.3E-62 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BMD_0387 9df7dee76115092995f22f5970b7ff8d 513 Pfam PF05681 Fumarate hydratase (Fumerase) 7 283 1.1E-72 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BMD_0387 9df7dee76115092995f22f5970b7ff8d 513 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 332 493 2.6E-51 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BMD_4459 030156108720afe2354f18337afa5597 352 SUPERFAMILY SSF55920 82 346 1.31E-83 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like BMD_4459 030156108720afe2354f18337afa5597 352 Gene3D G3DSA:3.40.350.10 1 124 3.3E-37 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BMD_4459 030156108720afe2354f18337afa5597 352 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 282 294 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BMD_4459 030156108720afe2354f18337afa5597 352 Pfam PF00557 Metallopeptidase family M24 135 336 6.2E-69 T 13-10-2018 IPR000994 Peptidase M24 BMD_4459 030156108720afe2354f18337afa5597 352 PRINTS PR00599 Methionine aminopeptidase-1 signature 304 316 1.1E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_4459 030156108720afe2354f18337afa5597 352 PRINTS PR00599 Methionine aminopeptidase-1 signature 206 222 1.1E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_4459 030156108720afe2354f18337afa5597 352 SUPERFAMILY SSF53092 2 124 3.77E-24 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BMD_4459 030156108720afe2354f18337afa5597 352 Pfam PF01321 Creatinase/Prolidase N-terminal domain 3 126 5.5E-26 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 BMD_4459 030156108720afe2354f18337afa5597 352 Gene3D G3DSA:3.90.230.10 125 352 1.4E-86 T 13-10-2018 BMD_1244 a42b1ffa6dfdf418d1c72e6f6c07e7d0 255 Pfam PF16285 Domain of unknown function (DUF4931) 8 254 9.5E-111 T 13-10-2018 BMD_1244 a42b1ffa6dfdf418d1c72e6f6c07e7d0 255 SUPERFAMILY SSF54197 15 130 4.35E-23 T 13-10-2018 IPR036265 HIT-like superfamily BMD_1244 a42b1ffa6dfdf418d1c72e6f6c07e7d0 255 Gene3D G3DSA:3.30.428.10 53 130 1.5E-12 T 13-10-2018 IPR036265 HIT-like superfamily BMD_1244 a42b1ffa6dfdf418d1c72e6f6c07e7d0 255 PIRSF PIRSF031505 1 255 1.6E-97 T 13-10-2018 IPR012361 Galactose-1-phosphate uridylyltransferase, short form, putative BMD_0829 e529098208b8101ce643592383417e88 240 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 174 1.3E-35 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BMD_0829 e529098208b8101ce643592383417e88 240 SUPERFAMILY SSF52540 1 207 6.07E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0829 e529098208b8101ce643592383417e88 240 Pfam PF13500 AAA domain 3 204 9.2E-33 T 13-10-2018 BMD_0829 e529098208b8101ce643592383417e88 240 Gene3D G3DSA:3.40.50.300 2 220 2.2E-48 T 13-10-2018 BMD_0829 e529098208b8101ce643592383417e88 240 PIRSF PIRSF006755 1 230 2.2E-48 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BMD_0829 e529098208b8101ce643592383417e88 240 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 205 23.055 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BMD_4665 a64c445ce5a6050fe2722c30bc6b6789 349 Gene3D G3DSA:3.90.1200.10 99 326 7.4E-22 T 13-10-2018 BMD_4665 a64c445ce5a6050fe2722c30bc6b6789 349 SUPERFAMILY SSF56112 13 324 2.89E-14 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_4665 a64c445ce5a6050fe2722c30bc6b6789 349 TIGRFAM TIGR02904 spore_ysxE: spore coat protein YsxE 8 315 2.7E-100 T 13-10-2018 IPR014253 Spore coat protein YsxE BMD_4665 a64c445ce5a6050fe2722c30bc6b6789 349 Gene3D G3DSA:3.30.200.20 4 94 2.6E-15 T 13-10-2018 BMD_4294 63c39f8a6d2810c5f617114084038548 136 Pfam PF14071 Putative coat protein 14 136 1.8E-41 T 13-10-2018 IPR025953 Putative coat protein YlbD BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 209 1.7E-27 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 177 204 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 60 73 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 TIGRFAM TIGR02859 spore_sigH: RNA polymerase sigma-H factor 13 210 5.7E-112 T 13-10-2018 IPR014218 RNA polymerase sigma-H type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 Pfam PF08281 Sigma-70, region 4 159 205 2.1E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 SMART SM00421 160 209 0.0054 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 SUPERFAMILY SSF88946 13 105 6.67E-24 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 Pfam PF04542 Sigma-70 region 2 36 105 1.5E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 PIRSF PIRSF002939 1 216 1.8E-109 T 13-10-2018 IPR016371 RNA polymerase sigma-H factor GO:0003677|GO:0006351|GO:0016987 BMD_0117 633eee648ef2594666ec1e2c65c33d6c 216 SUPERFAMILY SSF88659 123 209 9.15E-12 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 Gene3D G3DSA:3.40.190.10 161 263 1.3E-29 T 13-10-2018 BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 Pfam PF03466 LysR substrate binding domain 90 268 2.6E-29 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.9E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 Gene3D G3DSA:3.40.190.10 91 269 1.3E-29 T 13-10-2018 BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 SUPERFAMILY SSF46785 1 83 1.02E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 SUPERFAMILY SSF53850 91 269 1.22E-26 T 13-10-2018 BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1434 9a995dbae7730bbdd2c471913a7779bf 286 Gene3D G3DSA:1.10.10.10 1 83 4.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4124 ab869836b5027a187de94a241d63e8b6 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 105 121 3.6E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 3.6E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 3.6E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 3.6E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 7 289 1.6E-113 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 SMART SM01130 3 290 1.3E-138 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 Pfam PF00701 Dihydrodipicolinate synthetase family 4 288 6.2E-114 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 PIRSF PIRSF001365 1 290 2.6E-100 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 289 64.508 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 SUPERFAMILY SSF51569 2 288 9.84E-105 T 13-10-2018 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 135 165 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 Gene3D G3DSA:3.20.20.70 1 290 5.8E-118 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4124 ab869836b5027a187de94a241d63e8b6 290 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_2710 a649524004a7e6d9d794c1320f9af890 185 Pfam PF01476 LysM domain 29 70 1.6E-16 T 13-10-2018 IPR018392 LysM domain BMD_2710 a649524004a7e6d9d794c1320f9af890 185 SUPERFAMILY SSF50685 126 171 4.88E-6 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_2710 a649524004a7e6d9d794c1320f9af890 185 Gene3D G3DSA:3.10.350.10 24 77 1.2E-21 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2710 a649524004a7e6d9d794c1320f9af890 185 SMART SM00257 28 71 1.1E-17 T 13-10-2018 IPR018392 LysM domain BMD_2710 a649524004a7e6d9d794c1320f9af890 185 SUPERFAMILY SSF54106 27 71 3.92E-13 T 13-10-2018 BMD_2710 a649524004a7e6d9d794c1320f9af890 185 Pfam PF06725 3D domain 125 185 8.7E-20 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 BMD_3518 e7caf5e2d707480d9268cff31c101e21 321 SUPERFAMILY SSF52283 3 134 3.21E-33 T 13-10-2018 BMD_3518 e7caf5e2d707480d9268cff31c101e21 321 Gene3D G3DSA:3.40.50.720 5 304 1.2E-112 T 13-10-2018 BMD_3518 e7caf5e2d707480d9268cff31c101e21 321 SUPERFAMILY SSF51735 104 283 6.08E-60 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3518 e7caf5e2d707480d9268cff31c101e21 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 283 2.4E-64 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BMD_3518 e7caf5e2d707480d9268cff31c101e21 321 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 222 238 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BMD_3518 e7caf5e2d707480d9268cff31c101e21 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 18 315 9.2E-29 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BMD_3518 e7caf5e2d707480d9268cff31c101e21 321 Gene3D G3DSA:3.40.50.720 99 284 1.2E-112 T 13-10-2018 BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Gene3D G3DSA:3.10.350.10 87 139 2.5E-20 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Gene3D G3DSA:3.10.350.10 24 78 1.7E-17 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Gene3D G3DSA:3.10.350.10 161 212 3.8E-19 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 SUPERFAMILY SSF54106 28 70 6.28E-11 T 13-10-2018 BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 SMART SM00257 28 71 6.2E-16 T 13-10-2018 IPR018392 LysM domain BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 SMART SM00257 165 208 1.6E-16 T 13-10-2018 IPR018392 LysM domain BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 SMART SM00257 91 134 1.0E-17 T 13-10-2018 IPR018392 LysM domain BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 SUPERFAMILY SSF50685 280 326 3.84E-9 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 SUPERFAMILY SSF54106 89 134 4.32E-13 T 13-10-2018 BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Pfam PF01476 LysM domain 29 70 4.2E-12 T 13-10-2018 IPR018392 LysM domain BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Pfam PF01476 LysM domain 166 207 1.4E-14 T 13-10-2018 IPR018392 LysM domain BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Pfam PF01476 LysM domain 92 133 5.0E-16 T 13-10-2018 IPR018392 LysM domain BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 SUPERFAMILY SSF54106 164 207 5.1E-13 T 13-10-2018 BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Pfam PF06725 3D domain 279 339 5.5E-21 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 BMD_2238 d60e095d930bb7e7b3621bc3da77eb19 340 Gene3D G3DSA:2.40.40.10 213 332 3.2E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_2760 a781a8838b8347b24b51c79c40323990 227 Gene3D G3DSA:3.30.240.20 80 162 4.0E-24 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_2760 a781a8838b8347b24b51c79c40323990 227 Gene3D G3DSA:3.30.240.20 169 227 4.4E-16 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_2760 a781a8838b8347b24b51c79c40323990 227 Pfam PF04239 Protein of unknown function (DUF421) 88 204 2.4E-33 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_1543 692c50355c9b17e1747273306bb367d5 406 Gene3D G3DSA:1.20.1250.20 2 203 7.8E-45 T 13-10-2018 BMD_1543 692c50355c9b17e1747273306bb367d5 406 Pfam PF07690 Major Facilitator Superfamily 14 265 2.3E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1543 692c50355c9b17e1747273306bb367d5 406 Gene3D G3DSA:1.20.1250.20 204 402 2.7E-29 T 13-10-2018 BMD_1543 692c50355c9b17e1747273306bb367d5 406 SUPERFAMILY SSF103473 3 391 2.22E-82 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_5077 011eb3056ca3430aa1d1af5340d1ecce 228 Gene3D G3DSA:3.40.50.300 1 224 2.1E-67 T 13-10-2018 BMD_5077 011eb3056ca3430aa1d1af5340d1ecce 228 SMART SM00382 27 214 2.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5077 011eb3056ca3430aa1d1af5340d1ecce 228 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 4.4E-90 T 13-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 BMD_5077 011eb3056ca3430aa1d1af5340d1ecce 228 Pfam PF00005 ABC transporter 19 165 2.4E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_5077 011eb3056ca3430aa1d1af5340d1ecce 228 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_5077 011eb3056ca3430aa1d1af5340d1ecce 228 SUPERFAMILY SSF52540 1 220 5.45E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3551 07ab6382f517f367a74036332a54998c 221 Pfam PF03473 MOSC domain 53 162 2.7E-22 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 BMD_3551 07ab6382f517f367a74036332a54998c 221 Gene3D G3DSA:2.40.33.20 1 220 5.9E-68 T 13-10-2018 BMD_3551 07ab6382f517f367a74036332a54998c 221 SUPERFAMILY SSF50800 5 214 7.85E-65 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BMD_3551 07ab6382f517f367a74036332a54998c 221 Pfam PF03475 3-alpha domain 172 214 6.5E-13 T 13-10-2018 IPR005163 3-alpha domain BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 Gene3D G3DSA:1.10.246.130 252 376 4.4E-39 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 285 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 381 399 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 436 451 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 140 159 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 236 252 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 47 72 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 460 477 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 122 140 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 423 6.4E-62 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 25 553 1.3E-165 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 SUPERFAMILY SSF56235 15 559 4.82E-158 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 Pfam PF01019 Gamma-glutamyltranspeptidase 40 555 3.9E-144 T 13-10-2018 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 381 405 - T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BMD_1534 e8e6dd8cf9daf68f575a6044ac303a9f 562 Gene3D G3DSA:3.60.20.40 381 559 2.3E-61 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 SUPERFAMILY SSF55008 88 156 6.54E-13 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 297 598 8.0E-98 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 296 848 2.8E-185 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00941 Cadmium-transporting ATPase signature 351 367 8.2E-28 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00941 Cadmium-transporting ATPase signature 260 277 8.2E-28 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00941 Cadmium-transporting ATPase signature 431 445 8.2E-28 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00941 Cadmium-transporting ATPase signature 331 351 8.2E-28 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00941 Cadmium-transporting ATPase signature 174 195 8.2E-28 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00941 Cadmium-transporting ATPase signature 412 428 8.2E-28 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00941 Cadmium-transporting ATPase signature 91 100 8.2E-28 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Gene3D G3DSA:3.30.70.100 161 223 2.6E-17 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 SUPERFAMILY SSF56784 545 846 6.31E-53 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Pfam PF00403 Heavy-metal-associated domain 91 149 2.8E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Pfam PF00403 Heavy-metal-associated domain 162 220 2.6E-13 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 SUPERFAMILY SSF55008 156 226 2.75E-17 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 SUPERFAMILY SSF81665 296 839 8.63E-19 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 548 554 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 769 781 2.2E-25 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 745 764 2.2E-25 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 692 702 2.2E-25 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 396 410 2.2E-25 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 546 560 2.2E-25 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 669 680 2.2E-25 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 ProSitePatterns PS01229 Hypothetical cof family signature 2. 745 767 - T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 319 825 2.0E-89 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Gene3D G3DSA:3.40.1110.10 557 676 3.7E-88 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Gene3D G3DSA:3.40.50.1000 527 797 3.7E-88 T 13-10-2018 IPR023214 HAD superfamily BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 283 848 1.1E-122 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Pfam PF00702 haloacid dehalogenase-like hydrolase 542 759 7.7E-43 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Pfam PF00122 E1-E2 ATPase 347 526 9.4E-56 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 SUPERFAMILY SSF81653 349 446 1.44E-25 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Gene3D G3DSA:2.70.150.20 334 450 2.0E-34 T 13-10-2018 BMD_3164 f778aa5996421931c2ff9cf6f2f52c97 853 Gene3D G3DSA:3.30.70.100 86 160 8.3E-13 T 13-10-2018 BMD_3651 8a376dba70e614e5e80c94a4b3fe9fb6 214 Gene3D G3DSA:3.40.50.850 1 209 2.3E-54 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_3651 8a376dba70e614e5e80c94a4b3fe9fb6 214 SUPERFAMILY SSF52499 5 203 3.14E-54 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_3651 8a376dba70e614e5e80c94a4b3fe9fb6 214 Pfam PF00857 Isochorismatase family 14 165 1.3E-23 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 BMD_4769 0f147806d3777edaafcbdb40a0567230 98 Pfam PF14007 YtpI-like protein 5 90 1.5E-33 T 13-10-2018 IPR025618 YtpI-like protein BMD_4092 253cd8131b148d0e098c23e961279c79 74 SUPERFAMILY SSF50182 6 65 8.18E-25 T 13-10-2018 IPR010920 LSM domain superfamily BMD_4092 253cd8131b148d0e098c23e961279c79 74 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 65 2.6E-33 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BMD_4092 253cd8131b148d0e098c23e961279c79 74 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 65 30.651 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BMD_4092 253cd8131b148d0e098c23e961279c79 74 Pfam PF17209 Hfq protein 7 69 2.8E-33 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BMD_4092 253cd8131b148d0e098c23e961279c79 74 Gene3D G3DSA:2.30.30.100 1 74 6.2E-35 T 13-10-2018 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 SUPERFAMILY SSF51735 29 212 5.31E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 248 265 1.0E-43 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 172 185 1.0E-43 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 196 224 1.0E-43 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 266 282 1.0E-43 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 357 383 1.0E-43 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 Gene3D G3DSA:3.30.360.10 205 514 4.3E-112 T 13-10-2018 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 SUPERFAMILY SSF55347 211 512 1.5E-101 T 13-10-2018 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 Gene3D G3DSA:3.40.50.720 29 204 3.0E-59 T 13-10-2018 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 32 513 77.823 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 36 216 5.4E-61 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 33 512 1.7E-170 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 219 511 1.5E-101 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1913 8dff18a5ef36cfd6c1d10b05f25cb064 528 PIRSF PIRSF000110 15 515 1.3E-180 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 6.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 6.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 6.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 6.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 6.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 Gene3D G3DSA:3.40.50.720 2 249 1.2E-72 T 13-10-2018 BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 245 1.6E-54 T 13-10-2018 BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 4.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 4.3E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1976 d24085c22fbf5d54e93d6a1933ff991a 250 SUPERFAMILY SSF51735 7 247 1.87E-72 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1026 58919d657d472f68ee3a5b5c7051a720 181 Gene3D G3DSA:1.10.8.1080 96 172 7.8E-25 T 13-10-2018 BMD_1026 58919d657d472f68ee3a5b5c7051a720 181 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 62 79 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 BMD_1026 58919d657d472f68ee3a5b5c7051a720 181 Pfam PF01380 SIS domain 5 87 5.9E-8 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_1026 58919d657d472f68ee3a5b5c7051a720 181 Gene3D G3DSA:3.40.50.10490 1 95 7.5E-30 T 13-10-2018 BMD_1026 58919d657d472f68ee3a5b5c7051a720 181 SUPERFAMILY SSF53697 2 125 1.31E-37 T 13-10-2018 BMD_2317 d870d12c2c39b836e82eda911edf2136 538 Gene3D G3DSA:3.40.50.980 52 205 6.2E-127 T 13-10-2018 BMD_2317 d870d12c2c39b836e82eda911edf2136 538 Pfam PF13193 AMP-binding enzyme C-terminal domain 449 523 5.9E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_2317 d870d12c2c39b836e82eda911edf2136 538 Gene3D G3DSA:2.30.38.10 354 432 6.2E-127 T 13-10-2018 BMD_2317 d870d12c2c39b836e82eda911edf2136 538 Pfam PF00501 AMP-binding enzyme 31 439 3.3E-110 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_2317 d870d12c2c39b836e82eda911edf2136 538 SUPERFAMILY SSF56801 15 534 2.35E-156 T 13-10-2018 BMD_2317 d870d12c2c39b836e82eda911edf2136 538 ProSitePatterns PS00455 Putative AMP-binding domain signature. 189 200 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_2317 d870d12c2c39b836e82eda911edf2136 538 Gene3D G3DSA:3.30.300.310 435 537 4.9E-33 T 13-10-2018 BMD_2317 d870d12c2c39b836e82eda911edf2136 538 Gene3D G3DSA:3.40.50.980 49 353 6.2E-127 T 13-10-2018 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 SMART SM00729 60 268 4.9E-33 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 SUPERFAMILY SSF102114 20 327 1.15E-71 T 13-10-2018 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 SMART SM00876 236 326 3.8E-35 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 TIGRFAM TIGR00433 bioB: biotin synthase 33 325 1.9E-118 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 236 325 8.4E-14 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 Hamap MF_01694 Biotin synthase [bioB]. 20 327 39.989 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 PIRSF PIRSF001619 3 331 2.7E-123 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 Gene3D G3DSA:3.20.20.70 21 329 4.5E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0460 443e2b1d65e5a22783cdadfe4b406246 331 Pfam PF04055 Radical SAM superfamily 69 223 3.3E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_3662 883cb13e565974a66b8535bbbf224ef7 509 Pfam PF00171 Aldehyde dehydrogenase family 11 417 5.3E-26 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_3662 883cb13e565974a66b8535bbbf224ef7 509 TIGRFAM TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating) 4 485 2.2E-187 T 13-10-2018 IPR013357 Acetaldehyde dehydrogenase, acetylating BMD_3662 883cb13e565974a66b8535bbbf224ef7 509 SUPERFAMILY SSF53720 10 450 2.09E-78 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_3662 883cb13e565974a66b8535bbbf224ef7 509 Gene3D G3DSA:3.40.309.10 222 406 2.6E-179 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_3662 883cb13e565974a66b8535bbbf224ef7 509 Gene3D G3DSA:3.40.605.10 16 445 2.6E-179 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_3737 eca34f35a7ed00517ceeff5d4ffd3347 109 Pfam PF03551 Transcriptional regulator PadR-like family 14 82 1.8E-21 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal BMD_3737 eca34f35a7ed00517ceeff5d4ffd3347 109 Gene3D G3DSA:1.10.10.10 1 108 6.1E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3737 eca34f35a7ed00517ceeff5d4ffd3347 109 SUPERFAMILY SSF46785 10 100 3.25E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 TIGRFAM TIGR04502 microcomp_EutL: microcompartment protein EutL 5 217 2.5E-110 T 13-10-2018 IPR030983 Ethanolamine utilization protein EutL GO:0005198 BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 PIRSF PIRSF012290 1 217 6.1E-71 T 13-10-2018 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0031469 BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 Gene3D G3DSA:3.30.70.1810 7 106 8.9E-39 T 13-10-2018 BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 Gene3D G3DSA:3.30.70.1810 107 217 2.5E-48 T 13-10-2018 BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 SMART SM00877 34 131 1.7E-4 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 SMART SM00877 145 214 6.6E-6 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 Pfam PF00936 BMC domain 35 107 1.3E-9 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3663 b056642470b9a40978e1bfd3bc9a6545 217 SUPERFAMILY SSF143414 156 210 5.76E-5 T 13-10-2018 IPR037233 CcmK-like superfamily BMD_2987 e24dfe9fd894f2fa7e0b68f257013b5b 228 Pfam PF01730 UreF 37 183 1.9E-28 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 BMD_2987 e24dfe9fd894f2fa7e0b68f257013b5b 228 Hamap MF_01385 Urease accessory protein UreF [ureF]. 4 228 27.237 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 BMD_2987 e24dfe9fd894f2fa7e0b68f257013b5b 228 PIRSF PIRSF009467 1 228 3.4E-75 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 BMD_2987 e24dfe9fd894f2fa7e0b68f257013b5b 228 Gene3D G3DSA:1.10.4190.10 1 206 2.2E-65 T 13-10-2018 IPR038277 UreF domain superfamily BMD_4737 831864fe81b0614ab32fbd52d601f589 66 PRINTS PR00064 Ribosomal protein L35 signature 3 20 5.6E-23 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 PRINTS PR00064 Ribosomal protein L35 signature 21 35 5.6E-23 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 PRINTS PR00064 Ribosomal protein L35 signature 36 54 5.6E-23 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 Gene3D G3DSA:2.40.50.530 1 63 2.9E-22 T 13-10-2018 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 Pfam PF01632 Ribosomal protein L35 2 62 7.4E-26 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 4.1E-26 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 19.256 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BMD_4737 831864fe81b0614ab32fbd52d601f589 66 SUPERFAMILY SSF143034 2 62 6.02E-22 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_1370 72300a514115b9483732c5175d4c9c89 329 SUPERFAMILY SSF55681 73 277 5.96E-62 T 13-10-2018 BMD_1370 72300a514115b9483732c5175d4c9c89 329 Gene3D G3DSA:1.10.10.10 2 62 4.5E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1370 72300a514115b9483732c5175d4c9c89 329 Gene3D G3DSA:3.30.930.10 71 277 1.6E-68 T 13-10-2018 BMD_1370 72300a514115b9483732c5175d4c9c89 329 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 8 326 37.797 T 13-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 BMD_1370 72300a514115b9483732c5175d4c9c89 329 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 11 77 3.4E-21 T 13-10-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 BMD_1370 72300a514115b9483732c5175d4c9c89 329 Gene3D G3DSA:2.30.30.100 280 326 5.1E-7 T 13-10-2018 BMD_1370 72300a514115b9483732c5175d4c9c89 329 Pfam PF02237 Biotin protein ligase C terminal domain 280 326 1.2E-9 T 13-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_1370 72300a514115b9483732c5175d4c9c89 329 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 86 325 4.7E-68 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_1370 72300a514115b9483732c5175d4c9c89 329 Pfam PF08279 HTH domain 6 60 3.7E-16 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_1370 72300a514115b9483732c5175d4c9c89 329 SUPERFAMILY SSF46785 3 62 1.63E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1370 72300a514115b9483732c5175d4c9c89 329 Pfam PF03099 Biotin/lipoate A/B protein ligase family 90 214 2.2E-19 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 Gene3D G3DSA:3.30.70.100 1 67 2.5E-27 T 13-10-2018 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 Pfam PF00403 Heavy-metal-associated domain 5 66 6.5E-18 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 4 68 9.7E-28 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 PRINTS PR00944 Copper ion binding protein signature 15 28 1.1E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 PRINTS PR00944 Copper ion binding protein signature 28 41 1.1E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 PRINTS PR00944 Copper ion binding protein signature 3 15 1.1E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 PRINTS PR00944 Copper ion binding protein signature 54 67 1.1E-9 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 BMD_1895 fe05a9ffd01458da09b201574a36f632 68 SUPERFAMILY SSF55008 2 67 3.14E-22 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BMD_2017 c52657c2d6068c656b4840f231bddaf1 341 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 3 325 3.7E-111 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 BMD_2017 c52657c2d6068c656b4840f231bddaf1 341 Gene3D G3DSA:3.20.20.30 1 329 1.9E-89 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2017 c52657c2d6068c656b4840f231bddaf1 341 SUPERFAMILY SSF51679 2 324 2.12E-61 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2017 c52657c2d6068c656b4840f231bddaf1 341 Pfam PF00296 Luciferase-like monooxygenase 16 295 4.9E-34 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_3572 7e6878a4c473629a010958cf696e378b 341 Pfam PF07836 DmpG-like communication domain 275 336 5.9E-31 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 BMD_3572 7e6878a4c473629a010958cf696e378b 341 SUPERFAMILY SSF89000 289 337 6.67E-18 T 13-10-2018 BMD_3572 7e6878a4c473629a010958cf696e378b 341 Gene3D G3DSA:1.10.8.60 276 341 5.6E-29 T 13-10-2018 BMD_3572 7e6878a4c473629a010958cf696e378b 341 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 274 335 3.0E-25 T 13-10-2018 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 BMD_3572 7e6878a4c473629a010958cf696e378b 341 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 8 337 4.3E-160 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 BMD_3572 7e6878a4c473629a010958cf696e378b 341 Pfam PF00682 HMGL-like 9 264 4.1E-59 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BMD_3572 7e6878a4c473629a010958cf696e378b 341 SUPERFAMILY SSF51569 6 267 1.01E-66 T 13-10-2018 BMD_3572 7e6878a4c473629a010958cf696e378b 341 Gene3D G3DSA:3.20.20.70 4 269 1.3E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3572 7e6878a4c473629a010958cf696e378b 341 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 341 173.712 T 13-10-2018 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 BMD_1043 5a5ac5f8f1be42d582482e0971a8ba09 236 Pfam PF13398 Peptidase M50B-like 36 230 1.3E-37 T 13-10-2018 BMD_0771 40b82de8a295a7cd4906b687ef557db1 452 Pfam PF02378 Phosphotransferase system, EIIC 29 359 5.0E-78 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_0771 40b82de8a295a7cd4906b687ef557db1 452 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 434 5.3E-193 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 BMD_0771 40b82de8a295a7cd4906b687ef557db1 452 PIRSF PIRSF006351 1 442 8.4E-157 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 BMD_0771 40b82de8a295a7cd4906b687ef557db1 452 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 434 5.3E-193 T 13-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 Pfam PF00392 Bacterial regulatory proteins, gntR family 1 49 6.0E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 SUPERFAMILY SSF48008 55 194 5.49E-20 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 SMART SM00345 2 50 3.4E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 SUPERFAMILY SSF46785 2 53 3.59E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 Gene3D G3DSA:1.20.120.530 46 198 6.5E-19 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 SMART SM00895 59 188 1.9E-7 T 13-10-2018 IPR011711 GntR, C-terminal BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 10 24 3.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 24 40 3.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 Gene3D G3DSA:1.10.10.10 1 45 3.6E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2854 6ded992f3266ed9affab1ca477af37c2 201 Pfam PF07729 FCD domain 59 187 8.9E-16 T 13-10-2018 IPR011711 GntR, C-terminal BMD_4684 908235631127bd5759a3980d91c4737d 341 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 15 177 5.5E-77 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BMD_4684 908235631127bd5759a3980d91c4737d 341 PIRSF PIRSF000116 202 333 5.7E-15 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BMD_4684 908235631127bd5759a3980d91c4737d 341 PIRSF PIRSF000116 1 208 4.4E-43 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BMD_4684 908235631127bd5759a3980d91c4737d 341 Gene3D G3DSA:1.10.3730.40 182 341 2.3E-70 T 13-10-2018 BMD_4684 908235631127bd5759a3980d91c4737d 341 Gene3D G3DSA:3.40.50.720 1 181 1.0E-80 T 13-10-2018 BMD_4684 908235631127bd5759a3980d91c4737d 341 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 15 327 7.4E-147 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BMD_4684 908235631127bd5759a3980d91c4737d 341 SUPERFAMILY SSF48179 183 331 2.04E-71 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4684 908235631127bd5759a3980d91c4737d 341 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 2 328 45.317 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BMD_4684 908235631127bd5759a3980d91c4737d 341 SUPERFAMILY SSF51735 3 182 5.37E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4684 908235631127bd5759a3980d91c4737d 341 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 325 5.1E-67 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BMD_0798 7f6f2eecac98d11a99fd9b2cbe9e4991 288 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 21 280 7.6E-71 T 13-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BMD_0798 7f6f2eecac98d11a99fd9b2cbe9e4991 288 Gene3D G3DSA:1.10.4200.10 167 283 1.5E-9 T 13-10-2018 BMD_0798 7f6f2eecac98d11a99fd9b2cbe9e4991 288 Hamap MF_01883 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [mdcB]. 1 288 123.928 T 13-10-2018 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BMD_0798 7f6f2eecac98d11a99fd9b2cbe9e4991 288 TIGRFAM TIGR03132 malonate_mdcB: triphosphoribosyl-dephospho-CoA synthase MdcB 20 282 2.7E-91 T 13-10-2018 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BMD_5149 fbd2611862344eac61afa8dd3ab8c5ee 142 SUPERFAMILY SSF52788 2 142 2.62E-36 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily BMD_5149 fbd2611862344eac61afa8dd3ab8c5ee 142 Gene3D G3DSA:3.40.50.2300 2 142 1.1E-50 T 13-10-2018 BMD_5149 fbd2611862344eac61afa8dd3ab8c5ee 142 SMART SM00226 2 141 3.2E-28 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BMD_5149 fbd2611862344eac61afa8dd3ab8c5ee 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 1.1E-7 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BMD_5149 fbd2611862344eac61afa8dd3ab8c5ee 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 1.1E-7 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BMD_5149 fbd2611862344eac61afa8dd3ab8c5ee 142 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 137 2.5E-30 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BMD_0311 01878adcf4d5660483d0969ea9a5f9c1 242 PIRSF PIRSF039085 1 241 7.2E-116 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BMD_0311 01878adcf4d5660483d0969ea9a5f9c1 242 SMART SM00382 26 213 1.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0311 01878adcf4d5660483d0969ea9a5f9c1 242 Gene3D G3DSA:3.40.50.300 1 241 7.5E-77 T 13-10-2018 BMD_0311 01878adcf4d5660483d0969ea9a5f9c1 242 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0311 01878adcf4d5660483d0969ea9a5f9c1 242 Pfam PF00005 ABC transporter 17 165 2.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0311 01878adcf4d5660483d0969ea9a5f9c1 242 SUPERFAMILY SSF52540 1 234 1.06E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1152 85bf4ab8500aabfbd52daf03dab87f6c 323 Gene3D G3DSA:3.30.460.20 1 132 1.5E-30 T 13-10-2018 BMD_1152 85bf4ab8500aabfbd52daf03dab87f6c 323 Pfam PF01544 CorA-like Mg2+ transporter protein 32 318 2.5E-64 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BMD_1152 85bf4ab8500aabfbd52daf03dab87f6c 323 SUPERFAMILY SSF143865 1 257 2.62E-62 T 13-10-2018 BMD_1152 85bf4ab8500aabfbd52daf03dab87f6c 323 Gene3D G3DSA:1.20.58.340 247 323 1.3E-15 T 13-10-2018 BMD_1152 85bf4ab8500aabfbd52daf03dab87f6c 323 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 12 320 1.8E-62 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 BMD_1152 85bf4ab8500aabfbd52daf03dab87f6c 323 Gene3D G3DSA:1.20.58.340 133 246 8.7E-29 T 13-10-2018 BMD_1152 85bf4ab8500aabfbd52daf03dab87f6c 323 SUPERFAMILY SSF144083 262 320 6.54E-15 T 13-10-2018 BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 SMART SM00116 154 205 0.0018 T 13-10-2018 IPR000644 CBS domain BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 SMART SM00116 87 135 1.7E-4 T 13-10-2018 IPR000644 CBS domain BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 SUPERFAMILY SSF54631 73 205 9.35E-24 T 13-10-2018 BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 Pfam PF00571 CBS domain 88 134 2.6E-7 T 13-10-2018 IPR000644 CBS domain BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 Pfam PF00571 CBS domain 148 205 7.0E-6 T 13-10-2018 IPR000644 CBS domain BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 PIRSF PIRSF026546 5 211 2.0E-101 T 13-10-2018 IPR016842 Protein of unknown function UCP026546, HtH-CBS BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 Gene3D G3DSA:3.10.580.10 65 213 5.1E-59 T 13-10-2018 BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 SUPERFAMILY SSF46785 6 82 7.21E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 Gene3D G3DSA:1.10.10.10 2 64 1.6E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4532 fd48f3882f18ae9c4a7ccca12f25c537 213 Pfam PF08279 HTH domain 10 62 1.5E-12 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_3902 77074e28b2c2561c94fd4b861f5eabb5 330 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 13 326 4.3E-98 T 13-10-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 BMD_3902 77074e28b2c2561c94fd4b861f5eabb5 330 Gene3D G3DSA:3.40.50.1100 48 155 1.2E-111 T 13-10-2018 BMD_3902 77074e28b2c2561c94fd4b861f5eabb5 330 SUPERFAMILY SSF53686 5 329 9.33E-86 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_3902 77074e28b2c2561c94fd4b861f5eabb5 330 PIRSF PIRSF006278 1 330 1.5E-95 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase BMD_3902 77074e28b2c2561c94fd4b861f5eabb5 330 Gene3D G3DSA:3.40.50.1100 14 323 1.2E-111 T 13-10-2018 BMD_3902 77074e28b2c2561c94fd4b861f5eabb5 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 14 317 8.8E-57 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_4580 8d28bf73ca95d5626d02e32689828f19 377 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 187 201 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_4580 8d28bf73ca95d5626d02e32689828f19 377 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 377 1.8E-155 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_4580 8d28bf73ca95d5626d02e32689828f19 377 SUPERFAMILY SSF53383 15 377 1.93E-119 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4580 8d28bf73ca95d5626d02e32689828f19 377 Gene3D G3DSA:3.90.1150.10 246 377 3.4E-53 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4580 8d28bf73ca95d5626d02e32689828f19 377 PIRSF PIRSF001434 1 377 7.5E-146 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_4580 8d28bf73ca95d5626d02e32689828f19 377 Gene3D G3DSA:3.40.640.10 2 245 2.7E-92 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_5267 59e7517b2183489ec08d9869812956ce 629 Pfam PF13932 GidA associated domain 401 615 8.4E-81 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 BMD_5267 59e7517b2183489ec08d9869812956ce 629 Gene3D G3DSA:1.10.10.1800 459 549 6.3E-27 T 13-10-2018 BMD_5267 59e7517b2183489ec08d9869812956ce 629 Gene3D G3DSA:3.50.50.60 296 458 5.8E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_5267 59e7517b2183489ec08d9869812956ce 629 Gene3D G3DSA:3.50.50.60 2 221 2.1E-84 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_5267 59e7517b2183489ec08d9869812956ce 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 BMD_5267 59e7517b2183489ec08d9869812956ce 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 BMD_5267 59e7517b2183489ec08d9869812956ce 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 8 620 8.9E-297 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 BMD_5267 59e7517b2183489ec08d9869812956ce 629 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 3.4E-6 T 13-10-2018 BMD_5267 59e7517b2183489ec08d9869812956ce 629 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 152 161 3.4E-6 T 13-10-2018 BMD_5267 59e7517b2183489ec08d9869812956ce 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 6 623 42.409 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 BMD_5267 59e7517b2183489ec08d9869812956ce 629 SMART SM01228 545 616 3.1E-42 T 13-10-2018 BMD_5267 59e7517b2183489ec08d9869812956ce 629 Pfam PF01134 Glucose inhibited division protein A 9 398 3.9E-172 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 BMD_5267 59e7517b2183489ec08d9869812956ce 629 SUPERFAMILY SSF51905 7 261 6.8E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_5267 59e7517b2183489ec08d9869812956ce 629 Gene3D G3DSA:1.10.150.570 568 620 4.4E-24 T 13-10-2018 BMD_5160 d232804578e863847e882bfd71e9077c 214 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 211 9.8E-101 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_5160 d232804578e863847e882bfd71e9077c 214 ProSitePatterns PS00958 Transaldolase active site. 80 97 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_5160 d232804578e863847e882bfd71e9077c 214 SUPERFAMILY SSF51569 1 211 2.93E-77 T 13-10-2018 BMD_5160 d232804578e863847e882bfd71e9077c 214 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 201 5.6E-54 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_5160 d232804578e863847e882bfd71e9077c 214 Gene3D G3DSA:3.20.20.70 1 213 1.5E-86 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_5160 d232804578e863847e882bfd71e9077c 214 Hamap MF_00494 Probable transaldolase [tal]. 1 214 46.476 T 13-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_5160 d232804578e863847e882bfd71e9077c 214 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_4696 ce237309966b264530c058751f0e67e1 205 Pfam PF01865 Protein of unknown function DUF47 6 202 4.0E-23 T 13-10-2018 IPR018445 Putative phosphate transport regulator BMD_4696 ce237309966b264530c058751f0e67e1 205 Gene3D G3DSA:1.20.58.220 9 205 2.8E-54 T 13-10-2018 IPR038078 PhoU-like domain superfamily BMD_4696 ce237309966b264530c058751f0e67e1 205 SUPERFAMILY SSF109755 6 196 1.23E-6 T 13-10-2018 BMD_2217 b6ff15a96645d3f55f2aab0ddc29da4b 870 Gene3D G3DSA:3.40.50.300 382 523 2.4E-101 T 13-10-2018 BMD_2217 b6ff15a96645d3f55f2aab0ddc29da4b 870 SMART SM00490 555 644 3.6E-20 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2217 b6ff15a96645d3f55f2aab0ddc29da4b 870 SUPERFAMILY SSF52540 385 652 1.05E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2217 b6ff15a96645d3f55f2aab0ddc29da4b 870 Gene3D G3DSA:3.40.50.300 524 668 2.4E-101 T 13-10-2018 BMD_2217 b6ff15a96645d3f55f2aab0ddc29da4b 870 Pfam PF00271 Helicase conserved C-terminal domain 539 644 1.0E-14 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2217 b6ff15a96645d3f55f2aab0ddc29da4b 870 Gene3D G3DSA:1.20.272.40 669 737 2.4E-101 T 13-10-2018 BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 Gene3D G3DSA:3.40.50.300 1257 1484 9.9E-20 T 13-10-2018 BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 Pfam PF01580 FtsK/SpoIIIE family 964 1160 3.7E-26 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 Pfam PF01580 FtsK/SpoIIIE family 642 857 3.8E-30 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 SUPERFAMILY SSF52540 638 897 8.89E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 SUPERFAMILY SSF52540 977 1186 6.21E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 Gene3D G3DSA:3.40.50.300 618 958 1.3E-79 T 13-10-2018 BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 Gene3D G3DSA:3.40.50.300 959 1244 3.9E-66 T 13-10-2018 BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 TIGRFAM TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC 207 1482 0.0 T 13-10-2018 IPR023839 Firmicutes EssC, C-terminal BMD_0352 6b435ff3620165ad23de22f6e304a77c 1492 Pfam PF12538 DNA transporter 4 120 2.4E-12 T 13-10-2018 IPR022206 Firmicutes EssC, N-terminal BMD_1641 341d56641e13a101f4500fd98a588792 451 SMART SM00388 231 298 5.8E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1641 341d56641e13a101f4500fd98a588792 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 1.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1641 341d56641e13a101f4500fd98a588792 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 1.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1641 341d56641e13a101f4500fd98a588792 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 1.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1641 341d56641e13a101f4500fd98a588792 451 SMART SM00387 340 450 1.6E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1641 341d56641e13a101f4500fd98a588792 451 Gene3D G3DSA:1.10.287.130 180 299 4.2E-24 T 13-10-2018 BMD_1641 341d56641e13a101f4500fd98a588792 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 449 7.8E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1641 341d56641e13a101f4500fd98a588792 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 232 296 4.2E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1641 341d56641e13a101f4500fd98a588792 451 SUPERFAMILY SSF158472 177 227 1.96E-5 T 13-10-2018 BMD_1641 341d56641e13a101f4500fd98a588792 451 SUPERFAMILY SSF55874 300 446 5.89E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1641 341d56641e13a101f4500fd98a588792 451 Gene3D G3DSA:3.30.565.10 302 451 3.0E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1641 341d56641e13a101f4500fd98a588792 451 SUPERFAMILY SSF47384 214 298 3.34E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_5258 8d0ace2e777535867611f165690a0910 366 SUPERFAMILY SSF52540 3 304 1.11E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5258 8d0ace2e777535867611f165690a0910 366 PIRSF PIRSF006641 1 366 5.6E-167 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BMD_5258 8d0ace2e777535867611f165690a0910 366 Gene3D G3DSA:3.10.20.30 48 364 5.4E-159 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_5258 8d0ace2e777535867611f165690a0910 366 Pfam PF01926 50S ribosome-binding GTPase 5 125 1.2E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_5258 8d0ace2e777535867611f165690a0910 366 SUPERFAMILY SSF81271 282 363 1.94E-35 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BMD_5258 8d0ace2e777535867611f165690a0910 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 1.9E-39 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 BMD_5258 8d0ace2e777535867611f165690a0910 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 46.785 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BMD_5258 8d0ace2e777535867611f165690a0910 366 Gene3D G3DSA:3.40.50.300 4 281 5.4E-159 T 13-10-2018 BMD_5258 8d0ace2e777535867611f165690a0910 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 5.1E-161 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BMD_5258 8d0ace2e777535867611f165690a0910 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_5258 8d0ace2e777535867611f165690a0910 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_5258 8d0ace2e777535867611f165690a0910 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_5258 8d0ace2e777535867611f165690a0910 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.6E-36 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_5258 8d0ace2e777535867611f165690a0910 366 Gene3D G3DSA:1.10.150.300 113 200 5.4E-159 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 Gene3D G3DSA:3.40.1030.10 77 330 2.6E-154 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 Pfam PF00591 Glycosyl transferase family, a/b domain 78 306 2.8E-48 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 SMART SM00941 345 419 6.2E-31 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 SUPERFAMILY SSF47648 1 69 4.32E-24 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 Pfam PF02885 Glycosyl transferase family, helical bundle domain 4 66 4.1E-23 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 13-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 PIRSF PIRSF000478 1 433 8.5E-172 T 13-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 345 416 6.1E-27 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 Gene3D G3DSA:1.20.970.10 1 67 7.7E-31 T 13-10-2018 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 3 411 6.0E-185 T 13-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 SUPERFAMILY SSF52418 69 329 1.96E-93 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 Gene3D G3DSA:3.90.1170.30 331 417 2.6E-154 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2815 d552df29bd5e67535e55983d24656dc6 433 SUPERFAMILY SSF54680 332 432 6.54E-29 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_3588 87718aeb8cafd219c14611f526abb64d 353 SMART SM00829 16 349 7.4E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_3588 87718aeb8cafd219c14611f526abb64d 353 SUPERFAMILY SSF51735 147 316 5.71E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3588 87718aeb8cafd219c14611f526abb64d 353 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 141 1.3E-34 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_3588 87718aeb8cafd219c14611f526abb64d 353 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BMD_3588 87718aeb8cafd219c14611f526abb64d 353 SUPERFAMILY SSF50129 8 180 2.43E-61 T 13-10-2018 IPR011032 GroES-like superfamily BMD_3588 87718aeb8cafd219c14611f526abb64d 353 Pfam PF00107 Zinc-binding dehydrogenase 183 311 2.3E-33 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_3588 87718aeb8cafd219c14611f526abb64d 353 Gene3D G3DSA:3.40.50.720 160 297 4.8E-121 T 13-10-2018 BMD_3588 87718aeb8cafd219c14611f526abb64d 353 Gene3D G3DSA:3.90.180.10 17 336 4.8E-121 T 13-10-2018 BMD_0580 404381a5c8eb007b0fa4a45ec5ca5280 313 Gene3D G3DSA:1.10.3210.10 117 296 3.8E-8 T 13-10-2018 BMD_0580 404381a5c8eb007b0fa4a45ec5ca5280 313 Pfam PF01966 HD domain 161 278 6.9E-11 T 13-10-2018 IPR006674 HD domain BMD_0580 404381a5c8eb007b0fa4a45ec5ca5280 313 SMART SM00471 156 288 7.8E-5 T 13-10-2018 IPR003607 HD/PDEase domain BMD_0580 404381a5c8eb007b0fa4a45ec5ca5280 313 SUPERFAMILY SSF109604 140 279 3.77E-10 T 13-10-2018 BMD_0580 404381a5c8eb007b0fa4a45ec5ca5280 313 SUPERFAMILY SSF50249 31 92 6.43E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0580 404381a5c8eb007b0fa4a45ec5ca5280 313 Gene3D G3DSA:2.40.50.140 22 104 1.8E-7 T 13-10-2018 BMD_5231 1f8a398c418d7f044f18a8bdac7daa6e 399 Gene3D G3DSA:3.40.50.150 182 399 1.3E-63 T 13-10-2018 BMD_5231 1f8a398c418d7f044f18a8bdac7daa6e 399 SMART SM00359 5 90 1.2E-4 T 13-10-2018 IPR002478 PUA domain GO:0003723 BMD_5231 1f8a398c418d7f044f18a8bdac7daa6e 399 SUPERFAMILY SSF88697 7 74 1.96E-17 T 13-10-2018 IPR015947 PUA-like superfamily BMD_5231 1f8a398c418d7f044f18a8bdac7daa6e 399 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 117 381 1.4E-32 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 BMD_5231 1f8a398c418d7f044f18a8bdac7daa6e 399 Gene3D G3DSA:2.30.130.10 5 73 2.4E-21 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 BMD_5231 1f8a398c418d7f044f18a8bdac7daa6e 399 SUPERFAMILY SSF53335 81 393 2.96E-68 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_5231 1f8a398c418d7f044f18a8bdac7daa6e 399 Gene3D G3DSA:3.30.750.80 74 181 1.4E-35 T 13-10-2018 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 Gene3D G3DSA:1.20.1720.10 12 200 1.0E-48 T 13-10-2018 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 PRINTS PR01036 Tetracycline resistance protein TetB signature 398 417 9.9E-14 T 13-10-2018 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 PRINTS PR01036 Tetracycline resistance protein TetB signature 300 324 9.9E-14 T 13-10-2018 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 PRINTS PR01036 Tetracycline resistance protein TetB signature 15 39 9.9E-14 T 13-10-2018 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 9.9E-14 T 13-10-2018 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 9.9E-14 T 13-10-2018 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 ProSitePatterns PS00216 Sugar transport proteins signature 1. 65 81 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 SUPERFAMILY SSF103473 5 524 4.71E-78 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 11 467 5.3E-87 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 Pfam PF07690 Major Facilitator Superfamily 16 407 3.2E-55 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3125 0b6c714a013516c40d31a7bed11b1f5a 535 Gene3D G3DSA:1.20.1250.20 254 429 4.2E-24 T 13-10-2018 BMD_0388 c0ac5cad2fa80c64536d22a33bb34c06 269 TIGRFAM TIGR02884 spore_pdaA: delta-lactam-biosynthetic de-N-acetylase 33 255 4.1E-111 T 13-10-2018 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA BMD_0388 c0ac5cad2fa80c64536d22a33bb34c06 269 Pfam PF01522 Polysaccharide deacetylase 64 186 2.4E-34 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_0388 c0ac5cad2fa80c64536d22a33bb34c06 269 SUPERFAMILY SSF88713 55 256 8.4E-66 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_0388 c0ac5cad2fa80c64536d22a33bb34c06 269 Gene3D G3DSA:3.20.20.370 17 260 4.4E-87 T 13-10-2018 BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 Gene3D G3DSA:3.40.50.300 2 299 1.5E-81 T 13-10-2018 BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 SUPERFAMILY SSF50331 239 351 3.83E-12 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 2.9E-121 T 13-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 Pfam PF12857 TOBE-like domain 290 345 4.4E-17 T 13-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 SMART SM00382 27 214 4.4E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 Pfam PF00005 ABC transporter 18 164 5.4E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2081 16b4c3b5d923e85e4fa19f6cb34c2107 357 SUPERFAMILY SSF52540 3 246 2.53E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 571 2.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 519 2.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 2.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 552 2.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Gene3D G3DSA:3.30.450.20 225 346 1.1E-25 T 13-10-2018 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Pfam PF13426 PAS domain 246 347 9.9E-11 T 13-10-2018 IPR000014 PAS domain BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Pfam PF13426 PAS domain 121 221 2.6E-8 T 13-10-2018 IPR000014 PAS domain BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SMART SM00388 363 425 6.3E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SUPERFAMILY SSF55785 121 232 1.03E-19 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SUPERFAMILY SSF55874 416 572 2.26E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SMART SM00091 235 301 8.6E-11 T 13-10-2018 IPR000014 PAS domain BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SMART SM00091 110 175 0.0031 T 13-10-2018 IPR000014 PAS domain BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 231 353 2.2E-26 T 13-10-2018 IPR000014 PAS domain BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 113 229 1.3E-19 T 13-10-2018 IPR000014 PAS domain BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SMART SM00387 467 574 4.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Gene3D G3DSA:1.10.287.130 348 424 1.6E-17 T 13-10-2018 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Gene3D G3DSA:3.30.450.20 105 224 3.5E-19 T 13-10-2018 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Gene3D G3DSA:3.30.565.10 426 574 1.3E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SUPERFAMILY SSF47384 356 424 9.61E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 SUPERFAMILY SSF55785 220 346 1.48E-25 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Pfam PF00512 His Kinase A (phospho-acceptor) domain 365 424 3.6E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2313 6f90ae984c36cbfd6094b2cb9261763d 574 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 573 2.6E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 Pfam PF01131 DNA topoisomerase 157 586 7.8E-124 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 Pfam PF13342 C-terminal repeat of topoisomerase 659 716 1.7E-16 T 13-10-2018 IPR025589 Topoisomerase C-terminal repeat BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 SMART SM00436 130 225 3.3E-33 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 Gene3D G3DSA:2.70.20.10 219 481 2.4E-154 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 715 5.5E-187 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 SMART SM00437 273 551 2.0E-84 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 SMART SM00493 1 130 7.8E-12 T 13-10-2018 IPR006171 TOPRIM domain BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 Gene3D G3DSA:3.40.50.140 1 157 5.7E-52 T 13-10-2018 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 Gene3D G3DSA:1.10.460.10 164 596 2.4E-154 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 Pfam PF01751 Toprim domain 3 138 3.9E-11 T 13-10-2018 IPR006171 TOPRIM domain BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 310 324 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 Gene3D G3DSA:1.10.290.10 282 411 2.4E-154 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 195 213 7.2E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 397 413 7.2E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 514 528 7.2E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 315 324 7.2E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 104 117 7.2E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_1907 8907f539299f4e6a8c0062d2880e3006 717 SUPERFAMILY SSF56712 1 601 5.36E-177 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 SUPERFAMILY SSF55347 151 315 1.44E-53 T 13-10-2018 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 Gene3D G3DSA:3.30.360.10 149 315 6.0E-131 T 13-10-2018 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 160 318 1.8E-28 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 5 347 1.1E-137 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 SUPERFAMILY SSF51735 2 178 4.4E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 141 4.0E-34 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 4 341 43.456 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 146 162 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 Gene3D G3DSA:3.40.50.720 5 333 6.0E-131 T 13-10-2018 BMD_0678 c04ff75e1e0ac727e84a05d7578a5c79 347 SMART SM00859 5 143 3.8E-50 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 SUPERFAMILY SSF53633 11 267 2.36E-68 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_5224 c5811e4e61a467e31f47febda337e0be 274 PIRSF PIRSF000729 6 274 2.9E-96 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 TIGRFAM TIGR01027 proB: glutamate 5-kinase 11 270 5.9E-95 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 ProSitePatterns PS00902 Glutamate 5-kinase signature. 217 234 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 Hamap MF_00456 Glutamate 5-kinase [proB]. 11 271 37.235 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 PRINTS PR00474 Glutamate 5-kinase family signature 158 185 1.1E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 PRINTS PR00474 Glutamate 5-kinase family signature 82 110 1.1E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 PRINTS PR00474 Glutamate 5-kinase family signature 219 239 1.1E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 PRINTS PR00474 Glutamate 5-kinase family signature 48 62 1.1E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 PRINTS PR00474 Glutamate 5-kinase family signature 122 143 1.1E-52 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_5224 c5811e4e61a467e31f47febda337e0be 274 Gene3D G3DSA:3.40.1160.10 1 273 1.9E-91 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_5224 c5811e4e61a467e31f47febda337e0be 274 Pfam PF00696 Amino acid kinase family 11 245 2.8E-36 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BMD_0969 1168b07d39f91135848eb4a4cac66fd3 217 Gene3D G3DSA:3.40.109.10 1 186 4.1E-51 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_0969 1168b07d39f91135848eb4a4cac66fd3 217 Pfam PF00881 Nitroreductase family 16 182 6.4E-27 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_0969 1168b07d39f91135848eb4a4cac66fd3 217 SUPERFAMILY SSF55469 11 213 1.19E-46 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_0969 1168b07d39f91135848eb4a4cac66fd3 217 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 4 206 4.9E-71 T 13-10-2018 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5523 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 136 155 2.9E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 28 44 2.9E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 78 90 2.9E-21 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 ProSitePatterns PS00761 Signal peptidases I signature 3. 141 154 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 Pfam PF00717 Peptidase S24-like 35 102 5.9E-20 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 ProSitePatterns PS00501 Signal peptidases I serine active site. 37 44 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 SUPERFAMILY SSF51306 26 181 3.56E-53 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 Gene3D G3DSA:2.10.109.10 58 183 8.1E-48 T 13-10-2018 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 11 176 1.8E-56 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_4195 2365aabebe2e6aa8a426dcafda6a2872 183 ProSitePatterns PS00760 Signal peptidases I lysine active site. 80 92 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 BMD_2924 76308c4d110e5f2d0d66ff4b7527b1df 202 SUPERFAMILY SSF46689 7 75 7.7E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2924 76308c4d110e5f2d0d66ff4b7527b1df 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2924 76308c4d110e5f2d0d66ff4b7527b1df 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.7E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2924 76308c4d110e5f2d0d66ff4b7527b1df 202 Gene3D G3DSA:1.10.357.10 4 192 5.2E-53 T 13-10-2018 BMD_2924 76308c4d110e5f2d0d66ff4b7527b1df 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 61 2.4E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2924 76308c4d110e5f2d0d66ff4b7527b1df 202 Pfam PF14278 Transcriptional regulator C-terminal region 94 171 1.6E-21 T 13-10-2018 IPR039532 Transcriptional regulator TetR, C-terminal, Firmicutes type BMD_3791 d7a2fa3079f278c007361df508724359 286 Gene3D G3DSA:1.10.10.10 1 82 5.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3791 d7a2fa3079f278c007361df508724359 286 Gene3D G3DSA:3.40.190.290 83 283 1.1E-72 T 13-10-2018 BMD_3791 d7a2fa3079f278c007361df508724359 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 2.2E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3791 d7a2fa3079f278c007361df508724359 286 Pfam PF03466 LysR substrate binding domain 87 282 1.2E-30 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3791 d7a2fa3079f278c007361df508724359 286 SUPERFAMILY SSF46785 1 111 1.63E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3791 d7a2fa3079f278c007361df508724359 286 SUPERFAMILY SSF53850 89 282 1.9E-28 T 13-10-2018 BMD_3791 d7a2fa3079f278c007361df508724359 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3791 d7a2fa3079f278c007361df508724359 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3791 d7a2fa3079f278c007361df508724359 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.0E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_4404 a913e0aa8680d58d67ba39beb69c3f0a 489 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 12 487 7.3E-189 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 BMD_4404 a913e0aa8680d58d67ba39beb69c3f0a 489 Pfam PF00171 Aldehyde dehydrogenase family 19 483 2.1E-148 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_4404 a913e0aa8680d58d67ba39beb69c3f0a 489 Gene3D G3DSA:3.40.309.10 256 456 5.6E-152 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_4404 a913e0aa8680d58d67ba39beb69c3f0a 489 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 5 487 68.963 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 BMD_4404 a913e0aa8680d58d67ba39beb69c3f0a 489 Gene3D G3DSA:3.40.605.10 28 464 5.6E-152 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_4404 a913e0aa8680d58d67ba39beb69c3f0a 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_4404 a913e0aa8680d58d67ba39beb69c3f0a 489 SUPERFAMILY SSF53720 5 486 9.16E-150 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 Gene3D G3DSA:1.10.260.40 32 90 2.9E-20 T 13-10-2018 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 Gene3D G3DSA:3.40.50.2300 94 335 8.9E-64 T 13-10-2018 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 Pfam PF00356 Bacterial regulatory proteins, lacI family 33 77 6.2E-17 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 Gene3D G3DSA:3.40.50.2300 191 311 8.9E-64 T 13-10-2018 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 SMART SM00354 31 100 1.3E-31 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 SUPERFAMILY SSF47413 30 89 5.12E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 Pfam PF13377 Periplasmic binding protein-like domain 200 352 3.1E-24 T 13-10-2018 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 33 43 3.5E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 43 53 3.5E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3238 2c2f9f4ec6c2ac12801762c8efef09fa 357 SUPERFAMILY SSF53822 87 345 2.36E-59 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_3565 603d36c2447c137aaa072e691de0edd3 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 2.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3565 603d36c2447c137aaa072e691de0edd3 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 2.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3565 603d36c2447c137aaa072e691de0edd3 204 SUPERFAMILY SSF48498 91 203 5.43E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_3565 603d36c2447c137aaa072e691de0edd3 204 Gene3D G3DSA:1.10.357.10 63 204 4.5E-22 T 13-10-2018 BMD_3565 603d36c2447c137aaa072e691de0edd3 204 Gene3D G3DSA:1.10.10.60 2 62 8.1E-15 T 13-10-2018 BMD_3565 603d36c2447c137aaa072e691de0edd3 204 SUPERFAMILY SSF46689 9 81 4.57E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3565 603d36c2447c137aaa072e691de0edd3 204 ProSitePatterns PS01081 TetR-type HTH domain signature. 33 64 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_3565 603d36c2447c137aaa072e691de0edd3 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 64 1.5E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 PRINTS PR00171 Sugar transporter signature 149 159 7.3E-11 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 PRINTS PR00171 Sugar transporter signature 258 270 7.3E-11 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 PRINTS PR00171 Sugar transporter signature 235 256 7.3E-11 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 SUPERFAMILY SSF103473 3 331 1.44E-49 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 Pfam PF00083 Sugar (and other) transporter 2 334 2.2E-87 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 Gene3D G3DSA:1.20.1250.20 114 335 3.2E-65 T 13-10-2018 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 2 330 1.0E-88 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 Gene3D G3DSA:1.20.1250.20 1 111 1.4E-29 T 13-10-2018 BMD_5222 51175ce907cbcd9b92b0df96b7b82a68 335 ProSitePatterns PS00216 Sugar transport proteins signature 1. 193 210 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1334 dc5ce642bc9075bbdcf64106c779b0b5 89 Gene3D G3DSA:1.10.220.80 12 89 1.7E-30 T 13-10-2018 IPR023324 BH2638-like superfamily BMD_1334 dc5ce642bc9075bbdcf64106c779b0b5 89 ProDom PD062738 UPF0223 FAMILY UNCHARACTERISED CYTOSOLIC SUPERFAMILY YKTA LMO1058/LIN1050 INOSITOL MW0980 M6_SPY0948 3 89 2.0E-26 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 BMD_1334 dc5ce642bc9075bbdcf64106c779b0b5 89 SUPERFAMILY SSF158504 4 85 1.44E-33 T 13-10-2018 IPR023324 BH2638-like superfamily BMD_1334 dc5ce642bc9075bbdcf64106c779b0b5 89 Pfam PF05256 Uncharacterised protein family (UPF0223) 2 86 3.1E-39 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 BMD_1334 dc5ce642bc9075bbdcf64106c779b0b5 89 Hamap MF_01041 UPF0223 protein . 1 89 25.424 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 BMD_1334 dc5ce642bc9075bbdcf64106c779b0b5 89 PIRSF PIRSF037260 1 89 1.8E-38 T 13-10-2018 IPR007920 Protein of unknown function UPF0223 BMD_0707 2bddfeec196760f35675d16a0a055f76 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 3.3E-40 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0707 2bddfeec196760f35675d16a0a055f76 311 SUPERFAMILY SSF161098 88 291 8.07E-19 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0707 2bddfeec196760f35675d16a0a055f76 311 Gene3D G3DSA:1.10.3720.10 85 299 5.0E-20 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 Gene3D G3DSA:3.40.50.1860 5 253 1.9E-100 T 13-10-2018 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 Hamap MF_00258 Glutamate racemase [murI]. 3 255 41.451 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 69 77 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 179 189 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 SUPERFAMILY SSF53681 4 106 4.25E-37 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 SUPERFAMILY SSF53681 108 262 8.01E-42 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 Gene3D G3DSA:3.40.50.1860 94 206 1.9E-100 T 13-10-2018 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 211 7.6E-40 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4692 5cb05f2fe3d3c6016ca52491692d3b9e 264 TIGRFAM TIGR00067 glut_race: glutamate racemase 5 253 2.5E-90 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4990 63e809074de5fad899c5b462da70bddb 594 Gene3D G3DSA:1.20.140.10 252 422 1.9E-51 T 13-10-2018 BMD_4990 63e809074de5fad899c5b462da70bddb 594 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 252 415 6.9E-33 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BMD_4990 63e809074de5fad899c5b462da70bddb 594 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 31 143 2.1E-30 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_4990 63e809074de5fad899c5b462da70bddb 594 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 378 397 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_4990 63e809074de5fad899c5b462da70bddb 594 Gene3D G3DSA:1.20.140.10 423 594 1.8E-57 T 13-10-2018 BMD_4990 63e809074de5fad899c5b462da70bddb 594 Gene3D G3DSA:2.40.110.10 146 251 2.7E-35 T 13-10-2018 BMD_4990 63e809074de5fad899c5b462da70bddb 594 SUPERFAMILY SSF47203 257 422 1.42E-43 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_4990 63e809074de5fad899c5b462da70bddb 594 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 149 161 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_4990 63e809074de5fad899c5b462da70bddb 594 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 147 239 1.1E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_4990 63e809074de5fad899c5b462da70bddb 594 Gene3D G3DSA:1.10.540.10 1 145 1.9E-45 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_4990 63e809074de5fad899c5b462da70bddb 594 SUPERFAMILY SSF56645 25 263 2.75E-73 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_0585 4154e8e235afb48b59147a760e33d487 198 Pfam PF01047 MarR family 45 102 5.2E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0585 4154e8e235afb48b59147a760e33d487 198 Gene3D G3DSA:1.10.10.10 2 168 1.4E-46 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0585 4154e8e235afb48b59147a760e33d487 198 Hamap MF_01911 HTH-type transcriptional regulator Hpr [hpr]. 3 186 49.189 T 13-10-2018 IPR023488 HTH-type transcriptional regulator Hpr BMD_0585 4154e8e235afb48b59147a760e33d487 198 ProSitePatterns PS01117 MarR-type HTH domain signature. 77 111 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BMD_0585 4154e8e235afb48b59147a760e33d487 198 SMART SM00347 38 138 1.7E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0585 4154e8e235afb48b59147a760e33d487 198 SUPERFAMILY SSF46785 20 131 3.1E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4424 8d40eafaae30a7c3730b3df28e0cd563 327 SUPERFAMILY SSF52922 188 325 2.49E-40 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_4424 8d40eafaae30a7c3730b3df28e0cd563 327 SUPERFAMILY SSF52518 2 204 5.4E-74 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4424 8d40eafaae30a7c3730b3df28e0cd563 327 Pfam PF02780 Transketolase, C-terminal domain 194 317 1.0E-41 T 13-10-2018 IPR033248 Transketolase, C-terminal domain BMD_4424 8d40eafaae30a7c3730b3df28e0cd563 327 Gene3D G3DSA:3.40.50.920 193 327 1.6E-42 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_4424 8d40eafaae30a7c3730b3df28e0cd563 327 Gene3D G3DSA:3.40.50.970 1 192 1.3E-93 T 13-10-2018 BMD_4424 8d40eafaae30a7c3730b3df28e0cd563 327 SMART SM00861 4 179 3.0E-72 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_4424 8d40eafaae30a7c3730b3df28e0cd563 327 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 9.7E-53 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 Pfam PF00571 CBS domain 290 339 9.3E-4 T 13-10-2018 IPR000644 CBS domain BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 Pfam PF00571 CBS domain 218 270 0.0045 T 13-10-2018 IPR000644 CBS domain BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 SMART SM01091 355 432 7.9E-19 T 13-10-2018 IPR005170 Transporter-associated domain BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 Gene3D G3DSA:3.30.465.10 349 440 7.6E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 Gene3D G3DSA:3.10.580.10 195 348 2.5E-46 T 13-10-2018 BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 SUPERFAMILY SSF54631 204 342 2.27E-24 T 13-10-2018 BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 Pfam PF03471 Transporter associated domain 356 431 5.4E-14 T 13-10-2018 IPR005170 Transporter-associated domain BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 Pfam PF01595 Domain of unknown function DUF21 8 201 2.3E-47 T 13-10-2018 IPR002550 CNNM, transmembrane domain BMD_3020 e03ee172f7172d0296d7ae8110d6d0f6 441 SUPERFAMILY SSF56176 353 438 9.54E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_3118 18800babded9e7aea01922db2d3a25a9 176 Pfam PF13302 Acetyltransferase (GNAT) domain 9 149 3.4E-34 T 13-10-2018 IPR000182 GNAT domain BMD_3118 18800babded9e7aea01922db2d3a25a9 176 SUPERFAMILY SSF55729 1 173 5.85E-54 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3118 18800babded9e7aea01922db2d3a25a9 176 Gene3D G3DSA:3.40.630.30 4 174 5.7E-52 T 13-10-2018 BMD_2600 f66894f3afca4c8e1290e25c86c47eeb 233 PIRSF PIRSF036427 1 233 3.0E-79 T 13-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 BMD_2600 f66894f3afca4c8e1290e25c86c47eeb 233 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 216 6.2E-49 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_2600 f66894f3afca4c8e1290e25c86c47eeb 233 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 233 5.6E-87 T 13-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 BMD_2600 f66894f3afca4c8e1290e25c86c47eeb 233 SUPERFAMILY SSF53790 1 232 3.66E-46 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_2600 f66894f3afca4c8e1290e25c86c47eeb 233 Gene3D G3DSA:3.30.950.10 132 233 1.5E-12 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BMD_2600 f66894f3afca4c8e1290e25c86c47eeb 233 Gene3D G3DSA:3.40.1010.10 2 131 1.3E-35 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 PIRSF PIRSF015689 1 292 1.8E-135 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 Gene3D G3DSA:3.40.50.720 5 281 4.6E-124 T 13-10-2018 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 305 120.948 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 126 262 5.0E-62 T 13-10-2018 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 SMART SM00859 5 118 1.4E-6 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 112 4.1E-11 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 SUPERFAMILY SSF55347 126 262 8.5E-59 T 13-10-2018 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 SUPERFAMILY SSF51735 2 150 1.4E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3573 d753b763e585d5d896b8abaa5869855e 305 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 3 285 8.0E-141 T 13-10-2018 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 BMD_3573 d753b763e585d5d896b8abaa5869855e 305 Gene3D G3DSA:3.30.360.10 126 262 4.6E-124 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 PRINTS PR00702 Acriflavin resistance protein family signature 322 345 5.4E-38 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 5.4E-38 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 PRINTS PR00702 Acriflavin resistance protein family signature 349 370 5.4E-38 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 PRINTS PR00702 Acriflavin resistance protein family signature 455 478 5.4E-38 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 5.4E-38 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 PRINTS PR00702 Acriflavin resistance protein family signature 430 453 5.4E-38 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 PRINTS PR00702 Acriflavin resistance protein family signature 377 401 5.4E-38 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:1.20.1640.10 11 494 2.9E-234 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:3.30.70.1430 41 773 2.9E-234 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:1.20.1640.10 495 985 2.9E-234 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:3.30.2090.10 684 765 2.9E-234 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:3.30.70.1440 636 828 2.9E-234 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 SUPERFAMILY SSF82866 765 992 2.09E-42 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 SUPERFAMILY SSF82693 43 132 1.83E-17 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:3.30.2090.10 177 262 2.9E-234 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 SUPERFAMILY SSF82866 285 480 3.27E-38 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 SUPERFAMILY SSF82714 183 258 2.62E-6 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:3.30.70.1430 538 635 2.9E-234 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Pfam PF00873 AcrB/AcrD/AcrF family 6 989 2.1E-179 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 SUPERFAMILY SSF82693 150 303 8.89E-7 T 13-10-2018 BMD_1080 9270e565f2dd5a7fc19c4b5ee1109158 1009 Gene3D G3DSA:3.30.70.1320 133 318 2.9E-234 T 13-10-2018 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 Gene3D G3DSA:3.90.79.10 239 362 4.4E-32 T 13-10-2018 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 16 280 3.1E-111 T 13-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 Pfam PF00633 Helix-hairpin-helix motif 109 137 5.6E-7 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 Pfam PF14815 NUDIX domain 244 358 2.7E-24 T 13-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 SUPERFAMILY SSF55811 241 360 8.43E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 SMART SM00525 200 220 2.9E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 Gene3D G3DSA:1.10.340.30 30 141 3.6E-90 T 13-10-2018 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 Gene3D G3DSA:1.10.1670.10 19 222 3.6E-90 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 44 176 1.7E-19 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 SMART SM00478 48 199 5.5E-50 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BMD_0403 dc285f0e3347fc37ad1b78ef2e0fcc43 364 SUPERFAMILY SSF48150 13 231 4.71E-75 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BMD_2771 a5029ba3a66653813cb1bd825e7a0f54 134 SUPERFAMILY SSF82649 4 120 3.14E-31 T 13-10-2018 BMD_2771 a5029ba3a66653813cb1bd825e7a0f54 134 Pfam PF01592 NifU-like N terminal domain 3 116 3.3E-26 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 BMD_2771 a5029ba3a66653813cb1bd825e7a0f54 134 Gene3D G3DSA:3.90.1010.10 1 131 3.3E-38 T 13-10-2018 BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 Pfam PF03466 LysR substrate binding domain 90 291 1.8E-45 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 Gene3D G3DSA:3.40.190.290 91 295 5.5E-59 T 13-10-2018 BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 Gene3D G3DSA:1.10.10.10 1 90 2.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 SUPERFAMILY SSF46785 1 110 2.02E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.9E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_5008 9b62ba244ce01998b06d4c831d66ec10 297 SUPERFAMILY SSF53850 90 294 1.93E-41 T 13-10-2018 BMD_2251 18a2abd30e4e749854c2599678a7869b 723 Gene3D G3DSA:1.20.1640.10 513 714 3.2E-6 T 13-10-2018 BMD_2251 18a2abd30e4e749854c2599678a7869b 723 SUPERFAMILY SSF82866 146 326 4.45E-25 T 13-10-2018 BMD_2251 18a2abd30e4e749854c2599678a7869b 723 Pfam PF03176 MMPL family 385 712 1.2E-35 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 BMD_2251 18a2abd30e4e749854c2599678a7869b 723 Pfam PF03176 MMPL family 59 356 3.5E-46 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 BMD_2251 18a2abd30e4e749854c2599678a7869b 723 SUPERFAMILY SSF82866 501 706 1.27E-31 T 13-10-2018 BMD_3666 9aa43d47f67841cd5e1ec80787b1362f 481 PIRSF PIRSF012293 7 481 3.8E-149 T 13-10-2018 IPR009377 Ethanolamine utilisation EutA BMD_3666 9aa43d47f67841cd5e1ec80787b1362f 481 Gene3D G3DSA:3.30.420.40 15 140 7.2E-6 T 13-10-2018 BMD_3666 9aa43d47f67841cd5e1ec80787b1362f 481 Pfam PF06277 Ethanolamine utilisation protein EutA 9 480 7.3E-171 T 13-10-2018 IPR009377 Ethanolamine utilisation EutA BMD_3666 9aa43d47f67841cd5e1ec80787b1362f 481 SUPERFAMILY SSF53067 14 270 1.87E-9 T 13-10-2018 BMD_3666 9aa43d47f67841cd5e1ec80787b1362f 481 Gene3D G3DSA:3.30.420.40 150 180 7.2E-6 T 13-10-2018 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 PRINTS PR00069 Aldo-keto reductase signature 156 185 5.0E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 PRINTS PR00069 Aldo-keto reductase signature 34 58 5.0E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 PRINTS PR00069 Aldo-keto reductase signature 90 108 5.0E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 PRINTS PR00069 Aldo-keto reductase signature 122 139 5.0E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 PRINTS PR00069 Aldo-keto reductase signature 194 218 5.0E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 PIRSF PIRSF000097 1 271 2.0E-100 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 227 242 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 122 139 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 Pfam PF00248 Aldo/keto reductase family 15 258 3.8E-63 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 SUPERFAMILY SSF51430 3 263 2.1E-102 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1595 f5fad1d9d307842ea23afbcaca7444e3 274 Gene3D G3DSA:3.20.20.100 1 273 1.2E-121 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_4150 f86322827c768d4af7a53b0dc079d791 240 SUPERFAMILY SSF53633 5 238 6.55E-76 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_4150 f86322827c768d4af7a53b0dc079d791 240 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 238 4.0E-103 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 BMD_4150 f86322827c768d4af7a53b0dc079d791 240 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 238 45.197 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 BMD_4150 f86322827c768d4af7a53b0dc079d791 240 Pfam PF00696 Amino acid kinase family 7 217 7.1E-30 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BMD_4150 f86322827c768d4af7a53b0dc079d791 240 PIRSF PIRSF005650 1 240 4.8E-99 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 BMD_4150 f86322827c768d4af7a53b0dc079d791 240 Gene3D G3DSA:3.40.1160.10 1 239 3.9E-83 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_4311 1d53ed6a151918de83dafa7579666f1e 360 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 354 65.611 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BMD_4311 1d53ed6a151918de83dafa7579666f1e 360 Gene3D G3DSA:1.20.1090.10 173 358 9.2E-59 T 13-10-2018 BMD_4311 1d53ed6a151918de83dafa7579666f1e 360 Gene3D G3DSA:3.40.50.1970 2 172 6.0E-60 T 13-10-2018 BMD_4311 1d53ed6a151918de83dafa7579666f1e 360 Pfam PF01761 3-dehydroquinate synthase 68 324 3.4E-100 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BMD_4311 1d53ed6a151918de83dafa7579666f1e 360 PIRSF PIRSF001455 3 359 1.9E-109 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BMD_4311 1d53ed6a151918de83dafa7579666f1e 360 SUPERFAMILY SSF56796 8 356 1.96E-101 T 13-10-2018 BMD_4311 1d53ed6a151918de83dafa7579666f1e 360 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 14 352 1.3E-118 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BMD_4135 68913736ffaa839710bf912f63f4a4c1 305 SUPERFAMILY SSF55120 2 226 5.12E-82 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4135 68913736ffaa839710bf912f63f4a4c1 305 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 1 216 2.8E-84 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4135 68913736ffaa839710bf912f63f4a4c1 305 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 23 178 1.7E-59 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 BMD_4135 68913736ffaa839710bf912f63f4a4c1 305 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 179 237 2.1E-12 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 BMD_4135 68913736ffaa839710bf912f63f4a4c1 305 Gene3D G3DSA:3.30.2350.10 1 244 2.1E-92 T 13-10-2018 BMD_4135 68913736ffaa839710bf912f63f4a4c1 305 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 1 302 19.455 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 457 90.468 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 Pfam PF10415 Fumarase C C-terminus 403 456 6.5E-27 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 PRINTS PR00149 Fumarate lyase superfamily signature 312 328 7.1E-35 T 13-10-2018 IPR000362 Fumarate lyase family BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 PRINTS PR00149 Fumarate lyase superfamily signature 129 147 7.1E-35 T 13-10-2018 IPR000362 Fumarate lyase family BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 PRINTS PR00149 Fumarate lyase superfamily signature 266 293 7.1E-35 T 13-10-2018 IPR000362 Fumarate lyase family BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 PRINTS PR00149 Fumarate lyase superfamily signature 175 193 7.1E-35 T 13-10-2018 IPR000362 Fumarate lyase family BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 PRINTS PR00145 Argininosuccinate lyase family signature 312 328 6.7E-5 T 13-10-2018 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 PRINTS PR00145 Argininosuccinate lyase family signature 170 190 6.7E-5 T 13-10-2018 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 ProSitePatterns PS00163 Fumarate lyases signature. 312 321 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 Gene3D G3DSA:1.20.200.10 134 402 9.2E-115 T 13-10-2018 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 Pfam PF00206 Lyase 11 337 3.5E-116 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 455 1.7E-235 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 Gene3D G3DSA:1.10.275.10 4 133 6.2E-53 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 Gene3D G3DSA:1.10.40.30 403 457 1.0E-28 T 13-10-2018 BMD_2279 b1cac7487a55a7a41837c71adf0367e9 459 SUPERFAMILY SSF48557 3 455 8.33E-154 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_5141 f44520d552163a8cd6ac48e247aaff01 123 ProDom PD020811 ATP SYNTHASE I ION HYDROLASE SUBUNIT I CF0 MEMBRANE HYDROGEN 23 121 2.0E-51 T 13-10-2018 BMD_5141 f44520d552163a8cd6ac48e247aaff01 123 Pfam PF03899 ATP synthase I chain 10 105 1.3E-17 T 13-10-2018 IPR005598 ATP synthase protein I BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 Pfam PF13242 HAD-hyrolase-like 179 251 1.1E-21 T 13-10-2018 BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 8 228 1.9E-40 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 PIRSF PIRSF000915 1 115 1.0E-27 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 PIRSF PIRSF000915 105 256 8.3E-36 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 TIGRFAM TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family 4 252 4.8E-120 T 13-10-2018 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 Gene3D G3DSA:3.40.50.1000 6 242 2.2E-86 T 13-10-2018 IPR023214 HAD superfamily BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 Gene3D G3DSA:3.40.50.1000 84 179 2.2E-86 T 13-10-2018 IPR023214 HAD superfamily BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 Pfam PF13344 Haloacid dehalogenase-like hydrolase 8 107 6.4E-29 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA BMD_4966 a17f1087a1a78cf46961b395cf957a01 256 SUPERFAMILY SSF56784 4 253 1.26E-74 T 13-10-2018 IPR036412 HAD-like superfamily BMD_4587 59025efb77ae89108ad3a0b6100fe9b5 183 Gene3D G3DSA:3.40.50.850 1 181 1.3E-49 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_4587 59025efb77ae89108ad3a0b6100fe9b5 183 Pfam PF00857 Isochorismatase family 9 178 3.0E-39 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 BMD_4587 59025efb77ae89108ad3a0b6100fe9b5 183 PRINTS PR01398 Isochorismatase signature 85 107 1.7E-6 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 BMD_4587 59025efb77ae89108ad3a0b6100fe9b5 183 PRINTS PR01398 Isochorismatase signature 159 176 1.7E-6 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 BMD_4587 59025efb77ae89108ad3a0b6100fe9b5 183 PRINTS PR01398 Isochorismatase signature 141 159 1.7E-6 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 BMD_4587 59025efb77ae89108ad3a0b6100fe9b5 183 SUPERFAMILY SSF52499 4 181 1.23E-49 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_2161 6fd3645c593c3f0db39469b54eb10e4f 489 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 157 339 2.1E-11 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 BMD_2161 6fd3645c593c3f0db39469b54eb10e4f 489 PIRSF PIRSF000484 3 481 2.4E-153 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 BMD_2161 6fd3645c593c3f0db39469b54eb10e4f 489 Gene3D G3DSA:3.20.140.10 11 471 1.1E-206 T 13-10-2018 BMD_2161 6fd3645c593c3f0db39469b54eb10e4f 489 Gene3D G3DSA:3.20.20.70 152 319 1.1E-206 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2161 6fd3645c593c3f0db39469b54eb10e4f 489 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 11 466 6.5E-184 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 BMD_2161 6fd3645c593c3f0db39469b54eb10e4f 489 SUPERFAMILY SSF54675 6 139 4.32E-48 T 13-10-2018 BMD_2161 6fd3645c593c3f0db39469b54eb10e4f 489 SUPERFAMILY SSF51690 140 477 7.36E-133 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 SMART SM00257 103 146 2.1E-15 T 13-10-2018 IPR018392 LysM domain BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 SMART SM00257 55 98 1.9E-14 T 13-10-2018 IPR018392 LysM domain BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 Pfam PF00704 Glycosyl hydrolases family 18 192 469 1.1E-30 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 Gene3D G3DSA:3.20.20.80 196 476 1.8E-78 T 13-10-2018 BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 SMART SM00636 183 471 4.4E-19 T 13-10-2018 IPR011583 Chitinase II GO:0008061 BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 Gene3D G3DSA:3.10.350.10 100 150 2.5E-15 T 13-10-2018 IPR036779 LysM domain superfamily BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 SUPERFAMILY SSF54106 54 98 1.44E-10 T 13-10-2018 BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 Pfam PF01476 LysM domain 104 146 2.7E-14 T 13-10-2018 IPR018392 LysM domain BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 Pfam PF01476 LysM domain 56 98 5.3E-13 T 13-10-2018 IPR018392 LysM domain BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 Gene3D G3DSA:3.10.50.10 384 442 1.8E-78 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 SUPERFAMILY SSF54106 103 146 6.28E-11 T 13-10-2018 BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 Gene3D G3DSA:3.10.350.10 53 98 1.3E-15 T 13-10-2018 IPR036779 LysM domain superfamily BMD_1480 697046dab2b15e576935cbcc7b5b8c7c 481 SUPERFAMILY SSF51445 195 478 6.79E-44 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 Pfam PF00230 Major intrinsic protein 2 230 3.0E-49 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 ProSitePatterns PS00221 MIP family signature. 62 70 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 Gene3D G3DSA:1.20.1080.10 1 244 7.3E-78 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 SUPERFAMILY SSF81338 1 235 4.97E-73 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 PRINTS PR00783 Major intrinsic protein family signature 213 233 2.8E-51 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 PRINTS PR00783 Major intrinsic protein family signature 2 21 2.8E-51 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 PRINTS PR00783 Major intrinsic protein family signature 81 100 2.8E-51 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 PRINTS PR00783 Major intrinsic protein family signature 136 154 2.8E-51 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 PRINTS PR00783 Major intrinsic protein family signature 44 68 2.8E-51 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 PRINTS PR00783 Major intrinsic protein family signature 166 188 2.8E-51 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_0533 3dbc36674f3e4ad5ff77d80ed491bda0 275 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 230 1.6E-64 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BMD_4997 4e85e3b56ac222c5776dc77708a368ba 275 SMART SM00382 28 216 4.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4997 4e85e3b56ac222c5776dc77708a368ba 275 SUPERFAMILY SSF52540 4 229 1.63E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4997 4e85e3b56ac222c5776dc77708a368ba 275 Gene3D G3DSA:3.40.50.300 3 249 6.0E-69 T 13-10-2018 BMD_4997 4e85e3b56ac222c5776dc77708a368ba 275 Pfam PF00005 ABC transporter 20 167 1.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4997 4e85e3b56ac222c5776dc77708a368ba 275 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2878 e066d0dc003b409d4a7b426d190cb2a3 293 ProSitePatterns PS01228 Hypothetical cof family signature 1. 7 18 - T 13-10-2018 BMD_2878 e066d0dc003b409d4a7b426d190cb2a3 293 SUPERFAMILY SSF56784 4 283 9.13E-60 T 13-10-2018 IPR036412 HAD-like superfamily BMD_2878 e066d0dc003b409d4a7b426d190cb2a3 293 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 7 250 1.4E-27 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_2878 e066d0dc003b409d4a7b426d190cb2a3 293 Pfam PF08282 haloacid dehalogenase-like hydrolase 8 278 4.5E-57 T 13-10-2018 BMD_2878 e066d0dc003b409d4a7b426d190cb2a3 293 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 8 278 2.5E-55 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_2878 e066d0dc003b409d4a7b426d190cb2a3 293 Gene3D G3DSA:3.30.1240.10 84 206 9.5E-65 T 13-10-2018 BMD_2878 e066d0dc003b409d4a7b426d190cb2a3 293 Gene3D G3DSA:3.40.50.1000 6 274 9.5E-65 T 13-10-2018 IPR023214 HAD superfamily BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 Gene3D G3DSA:1.20.1480.50 167 252 3.6E-19 T 13-10-2018 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 Pfam PF00672 HAMP domain 197 245 4.1E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 322 6.0E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 372 481 9.2E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 SMART SM00387 371 484 4.9E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 SUPERFAMILY SSF158472 197 247 9.02E-13 T 13-10-2018 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 Gene3D G3DSA:1.10.287.130 253 323 2.5E-17 T 13-10-2018 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 SUPERFAMILY SSF55874 313 480 5.76E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 SMART SM00304 197 249 1.4E-15 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 Gene3D G3DSA:3.30.565.10 330 490 9.4E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 SMART SM00388 257 324 6.6E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 SUPERFAMILY SSF47384 244 323 6.87E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 5.9E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 481 5.9E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 437 5.9E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2588 e4c6cb96070dc6ffd40cc32318cff47f 496 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 423 5.9E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0769 0d4d52facafda67a31cde17b71717310 636 Gene3D G3DSA:1.10.1790.10 292 394 7.3E-24 T 13-10-2018 BMD_0769 0d4d52facafda67a31cde17b71717310 636 SUPERFAMILY SSF55804 495 633 1.96E-32 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_0769 0d4d52facafda67a31cde17b71717310 636 Gene3D G3DSA:3.40.50.2300 403 487 1.4E-7 T 13-10-2018 BMD_0769 0d4d52facafda67a31cde17b71717310 636 Pfam PF00874 PRD domain 196 275 7.1E-17 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_0769 0d4d52facafda67a31cde17b71717310 636 Pfam PF00874 PRD domain 304 392 1.2E-22 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_0769 0d4d52facafda67a31cde17b71717310 636 Pfam PF05043 Mga helix-turn-helix domain 72 160 7.0E-16 T 13-10-2018 IPR007737 Mga helix-turn-helix domain BMD_0769 0d4d52facafda67a31cde17b71717310 636 Gene3D G3DSA:1.10.10.10 73 145 2.9E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0769 0d4d52facafda67a31cde17b71717310 636 SUPERFAMILY SSF46785 83 127 3.96E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0769 0d4d52facafda67a31cde17b71717310 636 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 496 633 1.3E-31 T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_0769 0d4d52facafda67a31cde17b71717310 636 Gene3D G3DSA:1.10.10.10 3 56 5.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0769 0d4d52facafda67a31cde17b71717310 636 Gene3D G3DSA:3.40.930.10 494 634 7.1E-29 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_0769 0d4d52facafda67a31cde17b71717310 636 Pfam PF08279 HTH domain 8 52 4.3E-6 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_0769 0d4d52facafda67a31cde17b71717310 636 SUPERFAMILY SSF63520 168 275 1.96E-17 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_0769 0d4d52facafda67a31cde17b71717310 636 SUPERFAMILY SSF52794 402 482 5.75E-5 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_0769 0d4d52facafda67a31cde17b71717310 636 Gene3D G3DSA:1.10.1790.10 181 277 5.0E-13 T 13-10-2018 BMD_0769 0d4d52facafda67a31cde17b71717310 636 SUPERFAMILY SSF63520 292 396 4.32E-24 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 Gene3D G3DSA:1.10.8.60 151 225 2.3E-19 T 13-10-2018 BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 Pfam PF16193 AAA C-terminal domain 174 252 9.4E-28 T 13-10-2018 IPR032423 AAA C-terminal domain BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 Pfam PF12002 MgsA AAA+ ATPase C terminal 253 416 3.2E-65 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 Gene3D G3DSA:3.40.50.300 1 150 2.0E-42 T 13-10-2018 BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 Gene3D G3DSA:1.10.3710.10 331 425 8.1E-26 T 13-10-2018 BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 9 128 4.4E-17 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 SMART SM00382 39 151 1.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 Gene3D G3DSA:1.20.272.10 228 330 2.0E-41 T 13-10-2018 BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 SUPERFAMILY SSF48019 238 420 6.23E-72 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BMD_4607 4eaddc49ff9023bc2ed9500800ede76a 425 SUPERFAMILY SSF52540 4 230 1.22E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4313 df5cfe4db308eff624d904310abe1f23 260 SUPERFAMILY SSF53335 68 251 2.7E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4313 df5cfe4db308eff624d904310abe1f23 260 Gene3D G3DSA:3.40.50.150 67 257 4.6E-64 T 13-10-2018 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 Pfam PF03705 CheR methyltransferase, all-alpha domain 3 54 3.5E-14 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BMD_4313 df5cfe4db308eff624d904310abe1f23 260 Pfam PF01739 CheR methyltransferase, SAM binding domain 68 244 4.0E-58 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BMD_4313 df5cfe4db308eff624d904310abe1f23 260 SMART SM00138 2 255 1.8E-100 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 SUPERFAMILY SSF47757 4 67 1.12E-12 T 13-10-2018 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 PRINTS PR00996 Glutamate methyltransferase family signature 24 37 8.2E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 PRINTS PR00996 Glutamate methyltransferase family signature 196 210 8.2E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 PRINTS PR00996 Glutamate methyltransferase family signature 61 73 8.2E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 PRINTS PR00996 Glutamate methyltransferase family signature 130 146 8.2E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 PRINTS PR00996 Glutamate methyltransferase family signature 98 118 8.2E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_4313 df5cfe4db308eff624d904310abe1f23 260 PRINTS PR00996 Glutamate methyltransferase family signature 215 238 8.2E-41 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_1834 bf23cc876ab6d110939e83b61f9359c2 300 SUPERFAMILY SSF161098 86 273 4.06E-29 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1834 bf23cc876ab6d110939e83b61f9359c2 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 68 1.2E-6 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BMD_1834 bf23cc876ab6d110939e83b61f9359c2 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 289 9.4E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1834 bf23cc876ab6d110939e83b61f9359c2 300 Gene3D G3DSA:1.10.3720.10 79 289 1.5E-22 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2650 770ec9b98b39644878b54167cd2f4902 137 SUPERFAMILY SSF55729 12 128 9.49E-25 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2650 770ec9b98b39644878b54167cd2f4902 137 Pfam PF13673 Acetyltransferase (GNAT) domain 42 128 9.5E-15 T 13-10-2018 IPR000182 GNAT domain BMD_2650 770ec9b98b39644878b54167cd2f4902 137 Gene3D G3DSA:3.40.630.30 3 136 1.1E-33 T 13-10-2018 BMD_2223 72495fb15b01284a4812a108f9628a51 399 ProSitePatterns PS00216 Sugar transport proteins signature 1. 271 287 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_2223 72495fb15b01284a4812a108f9628a51 399 SUPERFAMILY SSF103473 12 394 1.44E-61 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2223 72495fb15b01284a4812a108f9628a51 399 Pfam PF07690 Major Facilitator Superfamily 19 233 9.1E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2223 72495fb15b01284a4812a108f9628a51 399 Pfam PF00083 Sugar (and other) transporter 250 334 1.3E-6 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BMD_2223 72495fb15b01284a4812a108f9628a51 399 Gene3D G3DSA:1.20.1250.20 10 392 9.1E-53 T 13-10-2018 BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 ProSitePatterns PS01218 TatC family signature. 151 170 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 Pfam PF00902 Sec-independent protein translocase protein (TatC) 10 218 2.5E-59 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 8 223 1.2E-71 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 236 16.319 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 99 125 2.5E-39 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 81 99 2.5E-39 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 7 34 2.5E-39 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_0257 f4359df2dde8f4608ba4e4a90d51cede 251 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 151 179 2.5E-39 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_2825 ecbd20c14cdd66c48b69b880785edd7c 112 Pfam PF03551 Transcriptional regulator PadR-like family 16 86 5.9E-24 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal BMD_2825 ecbd20c14cdd66c48b69b880785edd7c 112 SUPERFAMILY SSF46785 6 104 1.34E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2825 ecbd20c14cdd66c48b69b880785edd7c 112 Gene3D G3DSA:1.10.10.10 1 111 8.0E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 ProSitePatterns PS00617 RecF protein signature 1. 116 136 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 Gene3D G3DSA:3.40.50.300 6 345 4.8E-108 T 13-10-2018 BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 372 101.989 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 367 2.0E-129 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 ProSitePatterns PS00618 RecF protein signature 2. 312 330 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 347 1.7E-19 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 Gene3D G3DSA:1.20.1050.90 119 311 4.8E-108 T 13-10-2018 BMD_0004 28a3d63623d6b4d305a23121c7b676db 372 SUPERFAMILY SSF52540 2 348 3.69E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 56 4.6E-27 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 111 4.6E-27 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 18 33 4.6E-27 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 84 99 4.6E-27 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 127 4.6E-27 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 137 1.1E-40 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 39 56 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 SUPERFAMILY SSF50891 13 137 5.84E-48 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 PIRSF PIRSF001467 3 144 3.5E-42 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 BMD_4367 ddcb3e0da1a480bf2e7b1e54d0c332ee 144 Gene3D G3DSA:2.40.100.10 1 144 1.0E-59 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Gene3D G3DSA:3.30.54.20 626 679 4.3E-51 T 13-10-2018 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 SUPERFAMILY SSF50447 455 552 1.88E-16 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_4597 527db99fe45a5ddca511791ff0748efd 877 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 857 0.0 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 SMART SM00863 655 698 3.0E-21 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 877 184.625 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 655 698 9.6E-19 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Gene3D G3DSA:3.30.980.10 564 699 4.3E-51 T 13-10-2018 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Gene3D G3DSA:3.30.930.10 3 242 9.4E-96 T 13-10-2018 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 SUPERFAMILY SSF55681 5 245 2.98E-89 T 13-10-2018 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 SUPERFAMILY SSF55186 555 719 2.49E-53 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 300 313 1.6E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 276 292 1.6E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 199 210 1.6E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 226 239 1.6E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 PRINTS PR00980 Alanyl-tRNA synthetase signature 73 84 1.6E-32 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Gene3D G3DSA:2.40.30.130 457 552 2.7E-10 T 13-10-2018 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Gene3D G3DSA:3.10.310.40 766 876 6.6E-36 T 13-10-2018 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Pfam PF02272 DHHA1 domain 735 874 2.3E-30 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 SUPERFAMILY SSF101353 246 443 1.11E-69 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 BMD_4597 527db99fe45a5ddca511791ff0748efd 877 Pfam PF01411 tRNA synthetases class II (A) 8 557 1.2E-215 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 BMD_4237 67532e0dbbe7728d54c8dc16dfc969ab 240 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 2 234 37.727 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4237 67532e0dbbe7728d54c8dc16dfc969ab 240 SUPERFAMILY SSF51366 2 233 8.87E-67 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_4237 67532e0dbbe7728d54c8dc16dfc969ab 240 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 5 227 3.7E-60 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4237 67532e0dbbe7728d54c8dc16dfc969ab 240 Gene3D G3DSA:3.20.20.70 1 239 3.1E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4237 67532e0dbbe7728d54c8dc16dfc969ab 240 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 4 226 5.2E-45 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4237 67532e0dbbe7728d54c8dc16dfc969ab 240 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 56 69 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4237 67532e0dbbe7728d54c8dc16dfc969ab 240 SMART SM00934 4 229 2.4E-84 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4183 f590381d72ece2aa4e6cb75ba80cbb32 129 PIRSF PIRSF002889 2 128 1.8E-32 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BMD_4183 f590381d72ece2aa4e6cb75ba80cbb32 129 Pfam PF00460 Flagella basal body rod protein 9 38 1.3E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BMD_4183 f590381d72ece2aa4e6cb75ba80cbb32 129 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 4 126 3.8E-31 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Gene3D G3DSA:1.10.288.10 898 956 8.2E-68 T 13-10-2018 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Pfam PF00809 Pterin binding enzyme 339 572 8.7E-43 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 SUPERFAMILY SSF82282 3 378 9.29E-114 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Gene3D G3DSA:1.10.1240.10 616 703 3.8E-27 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 SMART SM01018 623 706 6.6E-36 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 SUPERFAMILY SSF56507 871 1146 3.4E-90 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Pfam PF02607 B12 binding domain 626 699 3.0E-23 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Gene3D G3DSA:3.20.20.20 320 615 3.2E-104 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Gene3D G3DSA:3.20.20.330 1 319 4.8E-109 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 899 1146 4.0E-61 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 TIGRFAM TIGR02082 metH: methionine synthase 9 1146 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Gene3D G3DSA:3.40.50.280 710 860 3.0E-48 T 13-10-2018 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 PIRSF PIRSF000381 1 1147 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 SUPERFAMILY SSF51717 336 600 3.53E-81 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 SUPERFAMILY SSF47644 620 704 1.27E-23 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Pfam PF02310 B12 binding domain 713 802 1.7E-19 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Pfam PF02574 Homocysteine S-methyltransferase 14 304 2.4E-77 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 Gene3D G3DSA:3.10.196.10 885 1146 8.2E-68 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1273 d9af401deed6d3c8843c5461debc2a04 1147 SUPERFAMILY SSF52242 707 841 2.75E-40 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 Gene3D G3DSA:1.10.1670.10 16 205 4.3E-82 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 ProSitePatterns PS01155 Endonuclease III family signature. 103 132 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 SUPERFAMILY SSF48150 1 210 1.24E-75 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 TIGRFAM TIGR01083 nth: endonuclease III 5 196 1.2E-86 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 Hamap MF_00942 Endonuclease III [nth]. 1 211 38.905 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 Gene3D G3DSA:1.10.340.30 22 133 4.3E-82 T 13-10-2018 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 SMART SM00478 39 187 7.9E-67 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 PIRSF PIRSF001435 1 213 1.1E-58 T 13-10-2018 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 189 205 2.3E-5 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 SMART SM00525 188 208 1.0E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 170 3.7E-24 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BMD_1381 7a8a59fb6266aa40b7297910068429e7 223 Pfam PF00633 Helix-hairpin-helix motif 100 128 3.5E-9 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 4.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 4.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 Gene3D G3DSA:3.40.50.720 1 248 4.3E-76 T 13-10-2018 BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 242 2.9E-68 T 13-10-2018 BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 SUPERFAMILY SSF51735 5 242 2.76E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2968 50fcdf2967286d8ecbba0387897494d2 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 8.2E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1076 2c8dea6c90c8dd5d10711ac084293ae0 438 Pfam PF00202 Aminotransferase class-III 23 429 1.0E-136 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_1076 2c8dea6c90c8dd5d10711ac084293ae0 438 SUPERFAMILY SSF53383 25 432 2.11E-130 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1076 2c8dea6c90c8dd5d10711ac084293ae0 438 Gene3D G3DSA:3.40.640.10 62 328 2.0E-152 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1076 2c8dea6c90c8dd5d10711ac084293ae0 438 Gene3D G3DSA:3.90.1150.10 14 425 2.0E-152 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1076 2c8dea6c90c8dd5d10711ac084293ae0 438 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_1076 2c8dea6c90c8dd5d10711ac084293ae0 438 PIRSF PIRSF000521 127 432 2.1E-43 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_1076 2c8dea6c90c8dd5d10711ac084293ae0 438 PIRSF PIRSF000521 27 132 1.2E-9 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Pfam PF00989 PAS fold 247 353 5.7E-11 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Pfam PF16736 Single Cache-like 33 151 1.9E-24 T 13-10-2018 IPR031967 PhoR, single Cache-like domain BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Gene3D G3DSA:3.30.565.10 435 586 1.5E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 244 361 6.2E-8 T 13-10-2018 IPR000014 PAS domain BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SUPERFAMILY SSF47384 348 429 3.92E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SMART SM00388 362 429 1.1E-24 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Gene3D G3DSA:1.10.287.130 358 433 1.0E-27 T 13-10-2018 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 475 584 2.5E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SMART SM00387 475 587 7.9E-41 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Gene3D G3DSA:1.10.8.500 187 235 5.6E-5 T 13-10-2018 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SMART SM00091 246 312 2.3E-5 T 13-10-2018 IPR000014 PAS domain BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SMART SM00304 187 239 4.2E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Pfam PF00512 His Kinase A (phospho-acceptor) domain 363 428 2.6E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Gene3D G3DSA:3.30.450.20 37 159 2.7E-6 T 13-10-2018 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 526 2.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 565 2.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 584 2.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 540 2.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SUPERFAMILY SSF158472 189 238 1.96E-7 T 13-10-2018 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 Gene3D G3DSA:3.30.450.20 236 357 7.9E-17 T 13-10-2018 BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SUPERFAMILY SSF55785 242 354 6.47E-11 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4751 9ddf883f85f55ffd22940dec61dac417 590 SUPERFAMILY SSF55874 418 583 1.44E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:3.30.2090.10 174 266 4.0E-261 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:3.30.70.1440 641 835 4.0E-261 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 SUPERFAMILY SSF82866 287 483 1.18E-39 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:1.20.1640.10 496 993 4.0E-261 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 SUPERFAMILY SSF82693 541 626 7.85E-7 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 350 371 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 433 456 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 528 545 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 458 481 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 323 346 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 PRINTS PR00702 Acriflavin resistance protein family signature 378 402 1.7E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:1.20.1640.10 11 495 4.0E-261 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Pfam PF00873 AcrB/AcrD/AcrF family 5 996 1.1E-210 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 SUPERFAMILY SSF82693 41 121 4.01E-18 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:3.30.70.1430 543 640 4.0E-261 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 SUPERFAMILY SSF82693 145 308 1.67E-7 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:3.30.70.1430 41 786 4.0E-261 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:3.30.70.1320 132 319 4.0E-261 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 SUPERFAMILY SSF82866 778 1000 8.37E-46 T 13-10-2018 BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 SUPERFAMILY SSF82714 693 774 4.84E-9 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 Gene3D G3DSA:3.30.2090.10 692 778 4.0E-261 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_3141 3ccdcf465ad6facca310ad04b66cd631 1012 SUPERFAMILY SSF82714 180 262 6.8E-9 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_3741 238a930af26a8b256c62154f828c5d20 328 Gene3D G3DSA:1.20.1250.20 136 320 1.7E-16 T 13-10-2018 BMD_3741 238a930af26a8b256c62154f828c5d20 328 Gene3D G3DSA:1.20.1250.20 3 130 1.2E-12 T 13-10-2018 BMD_3741 238a930af26a8b256c62154f828c5d20 328 SUPERFAMILY SSF103473 8 318 5.62E-41 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3741 238a930af26a8b256c62154f828c5d20 328 Pfam PF07690 Major Facilitator Superfamily 9 262 1.8E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 SUPERFAMILY SSF52540 625 874 3.99E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 Pfam PF12419 SNF2 Helicase protein 233 358 7.9E-34 T 13-10-2018 IPR022138 Helicase SWF/SNF-related BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 Gene3D G3DSA:3.40.50.10810 409 621 7.2E-68 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 SUPERFAMILY SSF52540 390 620 3.3E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 SMART SM00487 404 589 9.8E-30 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 Pfam PF00176 SNF2 family N-terminal domain 422 690 1.9E-61 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 SMART SM00490 735 818 6.6E-23 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 Pfam PF00271 Helicase conserved C-terminal domain 707 818 4.5E-20 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 Gene3D G3DSA:1.20.120.850 644 867 4.9E-85 T 13-10-2018 BMD_5119 d29b4b957e0c1e247e9815a070b6a49b 876 Gene3D G3DSA:3.40.50.300 630 832 4.9E-85 T 13-10-2018 BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 Pfam PF01047 MarR family 34 92 6.4E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 Gene3D G3DSA:1.10.10.10 4 139 1.3E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 SUPERFAMILY SSF46785 11 140 9.26E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 SMART SM00347 27 127 3.1E-26 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 1.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0920 95d802e06a7b49154e42adcee75a62e3 141 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 1.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1945 e4f7c094b460a9eda6d83aa47fd952aa 144 Pfam PF06491 Disulphide isomerase 8 144 9.7E-59 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family BMD_1945 e4f7c094b460a9eda6d83aa47fd952aa 144 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 8 144 3.3E-63 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family BMD_1945 e4f7c094b460a9eda6d83aa47fd952aa 144 Gene3D G3DSA:3.40.30.10 25 144 2.0E-49 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:3.30.70.1430 41 817 1.3E-275 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:3.30.2090.10 721 809 1.3E-275 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_5002 35d9e9df4335356b45210388b84a4624 1036 SUPERFAMILY SSF82866 809 1032 2.35E-47 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 SUPERFAMILY SSF82714 185 245 6.28E-6 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_5002 35d9e9df4335356b45210388b84a4624 1036 SUPERFAMILY SSF82693 133 336 3.66E-16 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:3.30.2090.10 177 295 1.3E-275 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:1.20.1640.10 11 529 1.3E-275 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:3.30.70.1430 578 671 1.3E-275 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Pfam PF00873 AcrB/AcrD/AcrF family 4 1026 7.5E-216 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 SUPERFAMILY SSF82714 723 807 1.57E-9 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:3.30.70.1440 672 866 1.3E-275 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:3.30.70.1320 133 351 1.3E-275 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 Gene3D G3DSA:1.20.1640.10 530 1023 1.3E-275 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 SUPERFAMILY SSF82693 41 133 1.28E-22 T 13-10-2018 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 PRINTS PR00702 Acriflavin resistance protein family signature 355 378 1.3E-47 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 PRINTS PR00702 Acriflavin resistance protein family signature 491 514 1.3E-47 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 1.3E-47 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 PRINTS PR00702 Acriflavin resistance protein family signature 382 403 1.3E-47 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 PRINTS PR00702 Acriflavin resistance protein family signature 410 434 1.3E-47 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 1.3E-47 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 1.3E-47 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_5002 35d9e9df4335356b45210388b84a4624 1036 SUPERFAMILY SSF82866 316 517 2.22E-43 T 13-10-2018 BMD_3761 0659000b2e342002a641efdd6612d69f 409 Gene3D G3DSA:1.20.1250.20 195 395 3.8E-66 T 13-10-2018 BMD_3761 0659000b2e342002a641efdd6612d69f 409 SUPERFAMILY SSF103473 3 402 1.23E-45 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3761 0659000b2e342002a641efdd6612d69f 409 Pfam PF01306 LacY proton/sugar symporter 3 397 1.0E-131 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 276 302 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 252 273 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 307 326 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 143 161 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 101 123 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 66 95 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 206 234 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 PRINTS PR00174 LacY proton/sugar symporter family signature 338 358 3.6E-74 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_3761 0659000b2e342002a641efdd6612d69f 409 Gene3D G3DSA:1.20.1250.20 1 194 8.5E-41 T 13-10-2018 BMD_3761 0659000b2e342002a641efdd6612d69f 409 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 4 392 2.2E-130 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 Gene3D G3DSA:3.10.20.400 1 92 4.9E-39 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 SUPERFAMILY SSF141734 3 107 2.09E-46 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 2 105 28.868 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 101 8.0E-34 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 51 100 3.0E-20 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 115 201 21.138 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 119 201 2.1E-32 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 4 206 37.586 T 13-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 SUPERFAMILY SSF101386 117 205 1.2E-27 T 13-10-2018 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 Gene3D G3DSA:1.10.287.1080 115 206 6.9E-34 T 13-10-2018 BMD_5052 a03f2d3959281dae908870822fccc2ce 207 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 119 205 1.2E-17 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 BMD_4632 2ac32116df9a49a56ac87787e0cc41ca 359 Pfam PF09557 Domain of unknown function (DUF2382) 143 251 2.3E-26 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_4632 2ac32116df9a49a56ac87787e0cc41ca 359 Pfam PF11181 Heat induced stress protein YflT 8 117 2.5E-15 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_4632 2ac32116df9a49a56ac87787e0cc41ca 359 TIGRFAM TIGR02271 TIGR02271: conserved domain 142 255 5.6E-35 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_1573 e7d3027564a316b3af503346460a0e67 275 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 7 274 2.3E-104 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 BMD_1573 e7d3027564a316b3af503346460a0e67 275 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 5 274 1.3E-140 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 BMD_4481 82299d01d7c7063fd63e69487f9348a7 350 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 204 218 - T 13-10-2018 IPR001482 Type II/IV secretion system protein BMD_4481 82299d01d7c7063fd63e69487f9348a7 350 SUPERFAMILY SSF52540 4 282 6.16E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4481 82299d01d7c7063fd63e69487f9348a7 350 SMART SM00382 136 258 0.003 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4481 82299d01d7c7063fd63e69487f9348a7 350 Gene3D G3DSA:3.40.50.300 110 323 1.2E-65 T 13-10-2018 BMD_4481 82299d01d7c7063fd63e69487f9348a7 350 Gene3D G3DSA:3.30.450.90 2 108 1.2E-28 T 13-10-2018 BMD_4481 82299d01d7c7063fd63e69487f9348a7 350 Pfam PF00437 Type II/IV secretion system protein 17 275 3.9E-69 T 13-10-2018 IPR001482 Type II/IV secretion system protein BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SUPERFAMILY SSF50891 622 748 4.93E-26 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SUPERFAMILY SSF56059 83 352 2.47E-61 T 13-10-2018 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Gene3D G3DSA:2.40.100.10 880 1103 1.1E-95 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1195 0.0 T 13-10-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.2E-43 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Gene3D G3DSA:2.40.100.10 621 775 1.2E-52 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SMART SM00796 797 1030 5.7E-106 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SMART SM00878 336 440 5.5E-38 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SUPERFAMILY SSF50891 914 1046 2.65E-26 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 448 762 7.8E-81 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 799 1019 8.8E-46 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Pfam PF00364 Biotin-requiring enzyme 1136 1195 3.4E-15 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SUPERFAMILY SSF52440 1 112 4.96E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SMART SM00797 471 758 3.1E-141 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 472 741 3.4E-79 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 1.3E-29 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Gene3D G3DSA:3.30.470.130 1 445 5.9E-179 T 13-10-2018 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 317 1.7E-61 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Gene3D G3DSA:3.30.1360.40 785 875 5.3E-21 T 13-10-2018 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 Gene3D G3DSA:2.40.50.100 1121 1195 2.1E-21 T 13-10-2018 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SUPERFAMILY SSF160467 800 890 7.32E-14 T 13-10-2018 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SUPERFAMILY SSF51246 330 442 1.78E-31 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BMD_0982 0e65c629bcc984fedab81d0ddf89260b 1203 SUPERFAMILY SSF51230 1119 1195 1.7E-19 T 13-10-2018 IPR011053 Single hybrid motif BMD_4109 462d8bcd112e1ff527b6ffb142ae428f 324 SUPERFAMILY SSF47413 2 75 1.75E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_4109 462d8bcd112e1ff527b6ffb142ae428f 324 SMART SM00530 7 68 2.6E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_4109 462d8bcd112e1ff527b6ffb142ae428f 324 Pfam PF13413 Helix-turn-helix domain 7 67 2.3E-21 T 13-10-2018 BMD_4109 462d8bcd112e1ff527b6ffb142ae428f 324 Pfam PF13464 Domain of unknown function (DUF4115) 244 313 4.3E-14 T 13-10-2018 IPR025194 Domain of unknown function DUF4115 BMD_4109 462d8bcd112e1ff527b6ffb142ae428f 324 Gene3D G3DSA:1.10.260.40 1 102 5.3E-31 T 13-10-2018 BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 Gene3D G3DSA:2.40.50.140 2 81 5.8E-12 T 13-10-2018 BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 Gene3D G3DSA:3.30.60.100 146 181 3.3E-19 T 13-10-2018 BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 Pfam PF02565 Recombination protein O C terminal 82 237 2.9E-42 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 TIGRFAM TIGR00613 reco: DNA repair protein RecO 3 243 2.3E-81 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 Hamap MF_00201 DNA repair protein RecO [recO]. 1 243 30.338 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 SUPERFAMILY SSF50249 4 77 1.3E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 Pfam PF11967 Recombination protein O N terminal 4 77 1.2E-23 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 Gene3D G3DSA:1.20.1440.120 88 225 3.3E-19 T 13-10-2018 BMD_4533 36f0304092da3894491eb3a4dedbd72e 254 SUPERFAMILY SSF57863 81 231 2.41E-48 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 SUPERFAMILY SSF52242 178 269 1.08E-12 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 Gene3D G3DSA:1.10.1240.10 94 169 1.9E-17 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 Pfam PF02607 B12 binding domain 96 166 1.1E-8 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 Gene3D G3DSA:3.40.50.280 177 282 3.5E-15 T 13-10-2018 BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 Pfam PF13411 MerR HTH family regulatory protein 7 74 1.1E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 SUPERFAMILY SSF46955 7 76 2.93E-15 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 Gene3D G3DSA:1.10.1660.10 1 93 6.6E-23 T 13-10-2018 BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 Pfam PF02310 B12 binding domain 179 267 3.6E-12 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_4342 408cb66b67d30b32ecc04537cb184e61 304 SMART SM00422 7 76 8.8E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1066 8ad269e803ac7f7438b2b3d42219cec8 291 SMART SM00646 165 284 2.5E-11 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_1066 8ad269e803ac7f7438b2b3d42219cec8 291 Gene3D G3DSA:3.40.630.40 83 290 4.3E-45 T 13-10-2018 BMD_1066 8ad269e803ac7f7438b2b3d42219cec8 291 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 85 284 1.0E-39 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_1066 8ad269e803ac7f7438b2b3d42219cec8 291 SUPERFAMILY SSF53187 83 286 5.65E-34 T 13-10-2018 BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 SUPERFAMILY SSF52172 2 125 1.02E-40 T 13-10-2018 IPR011006 CheY-like superfamily BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 Pfam PF00072 Response regulator receiver domain 6 115 3.5E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 Gene3D G3DSA:3.40.50.2300 1 130 7.0E-39 T 13-10-2018 BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 SUPERFAMILY SSF46894 129 228 7.09E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 SMART SM00448 4 114 6.6E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 Gene3D G3DSA:1.10.10.10 131 229 5.5E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 1.9E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_5228 c00646e24e6b4c3caada8e51c8b00d87 229 SMART SM00862 151 227 1.1E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3668 80b3febe6d67a1af301d94f1197d9dab 113 SMART SM00877 41 113 4.7E-13 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3668 80b3febe6d67a1af301d94f1197d9dab 113 Pfam PF00936 BMC domain 42 97 5.2E-10 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3668 80b3febe6d67a1af301d94f1197d9dab 113 PIRSF PIRSF012296 1 113 2.2E-48 T 13-10-2018 IPR009307 Ethanolamine utilisation EutS GO:0031469 BMD_3668 80b3febe6d67a1af301d94f1197d9dab 113 SUPERFAMILY SSF143414 41 108 3.79E-13 T 13-10-2018 IPR037233 CcmK-like superfamily BMD_3668 80b3febe6d67a1af301d94f1197d9dab 113 Gene3D G3DSA:3.30.70.1710 3 113 1.0E-44 T 13-10-2018 BMD_4168 167df0992c44564597d473071fabe2a9 385 SUPERFAMILY SSF101801 301 383 1.23E-24 T 13-10-2018 IPR036429 SpoA-like superfamily BMD_4168 167df0992c44564597d473071fabe2a9 385 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 305 375 2.3E-24 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) BMD_4168 167df0992c44564597d473071fabe2a9 385 SUPERFAMILY SSF103039 44 234 2.44E-50 T 13-10-2018 IPR028976 CheC-like superfamily BMD_4168 167df0992c44564597d473071fabe2a9 385 Pfam PF04509 CheC-like family 49 85 3.3E-15 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 BMD_4168 167df0992c44564597d473071fabe2a9 385 Pfam PF04509 CheC-like family 148 181 2.6E-15 T 13-10-2018 IPR007597 CheC-like protein GO:0016787 BMD_4168 167df0992c44564597d473071fabe2a9 385 Gene3D G3DSA:2.30.330.10 292 385 1.2E-35 T 13-10-2018 IPR036429 SpoA-like superfamily BMD_4168 167df0992c44564597d473071fabe2a9 385 Gene3D G3DSA:3.40.1550.10 44 239 1.2E-55 T 13-10-2018 IPR028976 CheC-like superfamily BMD_4168 167df0992c44564597d473071fabe2a9 385 PRINTS PR00956 Flagellar motor switch protein FliN signature 322 338 1.1E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BMD_4168 167df0992c44564597d473071fabe2a9 385 PRINTS PR00956 Flagellar motor switch protein FliN signature 338 351 1.1E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BMD_4168 167df0992c44564597d473071fabe2a9 385 PRINTS PR00956 Flagellar motor switch protein FliN signature 351 366 1.1E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BMD_4168 167df0992c44564597d473071fabe2a9 385 PRINTS PR00956 Flagellar motor switch protein FliN signature 305 321 1.1E-28 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BMD_4168 167df0992c44564597d473071fabe2a9 385 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 302 377 1.2E-30 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 BMD_2281 e157acabc467c6f265f9cb5c2e2744c5 298 Pfam PF01183 Glycosyl hydrolases family 25 13 191 1.1E-46 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 BMD_2281 e157acabc467c6f265f9cb5c2e2744c5 298 Gene3D G3DSA:3.20.20.80 1 218 3.5E-65 T 13-10-2018 BMD_2281 e157acabc467c6f265f9cb5c2e2744c5 298 SMART SM00641 13 111 6.1E-9 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup BMD_2281 e157acabc467c6f265f9cb5c2e2744c5 298 Pfam PF01471 Putative peptidoglycan binding domain 231 286 1.1E-11 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_2281 e157acabc467c6f265f9cb5c2e2744c5 298 Gene3D G3DSA:1.10.101.10 219 296 1.6E-15 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_2281 e157acabc467c6f265f9cb5c2e2744c5 298 SUPERFAMILY SSF47090 221 287 5.3E-16 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_2281 e157acabc467c6f265f9cb5c2e2744c5 298 SUPERFAMILY SSF51445 12 202 1.12E-50 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_4341 aebd13af283727c01cfe783dbddb4f2c 200 Pfam PF05389 Negative regulator of genetic competence (MecA) 1 103 2.4E-24 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA BMD_4341 aebd13af283727c01cfe783dbddb4f2c 200 Pfam PF05389 Negative regulator of genetic competence (MecA) 108 193 7.8E-18 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA BMD_4341 aebd13af283727c01cfe783dbddb4f2c 200 Hamap MF_01124 Adapter protein MecA [mecA]. 1 199 22.397 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA BMD_4341 aebd13af283727c01cfe783dbddb4f2c 200 PIRSF PIRSF029008 1 200 2.9E-51 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA BMD_4341 aebd13af283727c01cfe783dbddb4f2c 200 Gene3D G3DSA:3.30.70.1950 108 200 3.6E-26 T 13-10-2018 IPR038471 MecA, C-terminal domain superfamily BMD_3203 2d80520340d15cd4272ed6621c504591 525 SUPERFAMILY SSF54980 392 464 3.42E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_3203 2d80520340d15cd4272ed6621c504591 525 Gene3D G3DSA:3.30.70.3280 389 523 3.3E-42 T 13-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily BMD_3203 2d80520340d15cd4272ed6621c504591 525 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 523 48.329 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 BMD_3203 2d80520340d15cd4272ed6621c504591 525 PRINTS PR00315 GTP-binding elongation factor signature 15 28 7.5E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 PRINTS PR00315 GTP-binding elongation factor signature 65 73 7.5E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 PRINTS PR00315 GTP-binding elongation factor signature 85 95 7.5E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 PRINTS PR00315 GTP-binding elongation factor signature 101 112 7.5E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 PRINTS PR00315 GTP-binding elongation factor signature 137 146 7.5E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site BMD_3203 2d80520340d15cd4272ed6621c504591 525 SUPERFAMILY SSF50447 260 386 2.65E-25 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_3203 2d80520340d15cd4272ed6621c504591 525 SUPERFAMILY SSF52540 11 273 3.83E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3203 2d80520340d15cd4272ed6621c504591 525 Gene3D G3DSA:3.40.50.300 72 377 6.5E-105 T 13-10-2018 BMD_3203 2d80520340d15cd4272ed6621c504591 525 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 3 520 1.7E-197 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 BMD_3203 2d80520340d15cd4272ed6621c504591 525 Pfam PF00009 Elongation factor Tu GTP binding domain 13 272 2.7E-49 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 16 148 4.3E-20 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 Pfam PF03144 Elongation factor Tu domain 2 312 377 2.5E-9 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BMD_3203 2d80520340d15cd4272ed6621c504591 525 Gene3D G3DSA:3.40.50.300 110 273 6.5E-105 T 13-10-2018 BMD_3203 2d80520340d15cd4272ed6621c504591 525 Pfam PF16658 Class II release factor RF3, C-terminal domain 386 509 4.9E-40 T 13-10-2018 IPR032090 Peptide chain release factor 3, C-terminal BMD_3961 f3bca42d31f402fc2d55e2b6498aee46 461 Gene3D G3DSA:1.10.3110.10 106 199 1.2E-114 T 13-10-2018 BMD_3961 f3bca42d31f402fc2d55e2b6498aee46 461 SUPERFAMILY SSF51905 2 456 1.58E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3961 f3bca42d31f402fc2d55e2b6498aee46 461 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 2 458 2.7E-75 T 13-10-2018 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BMD_3961 f3bca42d31f402fc2d55e2b6498aee46 461 Pfam PF01593 Flavin containing amine oxidoreductase 11 456 3.9E-42 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_3961 f3bca42d31f402fc2d55e2b6498aee46 461 SUPERFAMILY SSF54373 300 406 3.14E-16 T 13-10-2018 BMD_3961 f3bca42d31f402fc2d55e2b6498aee46 461 Gene3D G3DSA:3.90.660.20 40 406 1.2E-114 T 13-10-2018 BMD_3961 f3bca42d31f402fc2d55e2b6498aee46 461 Gene3D G3DSA:3.50.50.60 5 448 1.2E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4982 143e0f8d998be6d5dccdb1db8bd7c3a1 278 Pfam PF03180 NLPA lipoprotein 33 276 9.2E-80 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_4982 143e0f8d998be6d5dccdb1db8bd7c3a1 278 Gene3D G3DSA:3.40.190.10 118 226 1.7E-91 T 13-10-2018 BMD_4982 143e0f8d998be6d5dccdb1db8bd7c3a1 278 SUPERFAMILY SSF53850 32 277 4.87E-76 T 13-10-2018 BMD_4982 143e0f8d998be6d5dccdb1db8bd7c3a1 278 PIRSF PIRSF002854 1 278 1.7E-97 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_4982 143e0f8d998be6d5dccdb1db8bd7c3a1 278 Gene3D G3DSA:3.40.190.10 35 273 1.7E-91 T 13-10-2018 BMD_4159 76c5ed77d4da0fc756d1993da0307eff 289 PIRSF PIRSF003092 1 289 8.6E-85 T 13-10-2018 IPR025501 ATP binding protein MinD BMD_4159 76c5ed77d4da0fc756d1993da0307eff 289 SUPERFAMILY SSF52540 24 271 1.07E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4159 76c5ed77d4da0fc756d1993da0307eff 289 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 25 260 4.1E-23 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 BMD_4159 76c5ed77d4da0fc756d1993da0307eff 289 Gene3D G3DSA:3.40.50.300 23 261 2.5E-58 T 13-10-2018 BMD_4659 262f603ac0f246b1e0f5f29b574df9fa 251 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 11 92 1.4E-26 T 13-10-2018 IPR010627 Peptidase A24A, N-terminal BMD_4659 262f603ac0f246b1e0f5f29b574df9fa 251 Pfam PF01478 Type IV leader peptidase family 104 205 5.0E-14 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 BMD_0358 5e6a25e8dd6837d7e22a516cb0cc73a5 171 SUPERFAMILY SSF55068 1 165 7.19E-69 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_0358 5e6a25e8dd6837d7e22a516cb0cc73a5 171 Gene3D G3DSA:3.30.1060.10 1 161 7.7E-63 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_0358 5e6a25e8dd6837d7e22a516cb0cc73a5 171 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 160 35.748 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_0358 5e6a25e8dd6837d7e22a516cb0cc73a5 171 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 2 153 3.6E-61 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_0358 5e6a25e8dd6837d7e22a516cb0cc73a5 171 Pfam PF01625 Peptide methionine sulfoxide reductase 3 154 1.1E-58 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BMD_4146 65803ed49683e049702a5a92471d2720 382 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 128 7.7E-39 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BMD_4146 65803ed49683e049702a5a92471d2720 382 PIRSF PIRSF006205 1 382 9.8E-158 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BMD_4146 65803ed49683e049702a5a92471d2720 382 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 142 225 1.1E-41 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BMD_4146 65803ed49683e049702a5a92471d2720 382 SUPERFAMILY SSF55347 122 260 3.27E-61 T 13-10-2018 BMD_4146 65803ed49683e049702a5a92471d2720 382 Gene3D G3DSA:1.10.1740.10 299 382 6.3E-28 T 13-10-2018 BMD_4146 65803ed49683e049702a5a92471d2720 382 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 379 46.058 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BMD_4146 65803ed49683e049702a5a92471d2720 382 Pfam PF13288 DXP reductoisomerase C-terminal domain 257 374 1.3E-42 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BMD_4146 65803ed49683e049702a5a92471d2720 382 Gene3D G3DSA:3.40.50.720 1 146 1.4E-47 T 13-10-2018 BMD_4146 65803ed49683e049702a5a92471d2720 382 SUPERFAMILY SSF69055 289 381 4.84E-30 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BMD_4146 65803ed49683e049702a5a92471d2720 382 SUPERFAMILY SSF51735 2 146 1.73E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4146 65803ed49683e049702a5a92471d2720 382 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 378 1.3E-161 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 SUPERFAMILY SSF63520 51 164 3.4E-31 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 SMART SM01061 1 60 4.4E-17 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 Gene3D G3DSA:1.10.1790.10 61 164 4.8E-34 T 13-10-2018 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 Pfam PF03123 CAT RNA binding domain 2 55 7.0E-17 T 13-10-2018 IPR004341 CAT RNA-binding domain GO:0003723 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 SUPERFAMILY SSF63520 173 270 6.54E-29 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 SUPERFAMILY SSF50151 2 53 1.57E-14 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 Gene3D G3DSA:1.10.1790.10 166 274 1.3E-31 T 13-10-2018 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 Gene3D G3DSA:2.30.24.10 1 55 8.0E-19 T 13-10-2018 IPR036650 CAT RNA-binding domain superfamily GO:0003723 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 Pfam PF00874 PRD domain 179 268 1.4E-23 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_4003 aff00dfb52b73874c66a0347537b50b8 275 Pfam PF00874 PRD domain 72 159 6.0E-25 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_0333 bc3407bd5eec704068e7d9c7bfa4e459 162 SUPERFAMILY SSF109854 4 161 1.02E-27 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_0333 bc3407bd5eec704068e7d9c7bfa4e459 162 Pfam PF12867 DinB superfamily 5 153 4.8E-22 T 13-10-2018 IPR024775 DinB-like domain BMD_0333 bc3407bd5eec704068e7d9c7bfa4e459 162 Gene3D G3DSA:1.20.120.450 1 159 1.1E-43 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_4263 9290d296c221e6503295fc7c859daf11 301 SUPERFAMILY SSF56176 14 194 6.95E-44 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_4263 9290d296c221e6503295fc7c859daf11 301 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 22 300 5.4E-98 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_4263 9290d296c221e6503295fc7c859daf11 301 Gene3D G3DSA:3.90.78.10 217 301 9.8E-35 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_4263 9290d296c221e6503295fc7c859daf11 301 Gene3D G3DSA:3.30.465.10 89 216 1.7E-45 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_4263 9290d296c221e6503295fc7c859daf11 301 SUPERFAMILY SSF56194 197 300 5.36E-37 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_4263 9290d296c221e6503295fc7c859daf11 301 Pfam PF01565 FAD binding domain 35 164 2.1E-24 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BMD_4263 9290d296c221e6503295fc7c859daf11 301 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 201 299 5.8E-29 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_4263 9290d296c221e6503295fc7c859daf11 301 Gene3D G3DSA:3.30.43.10 1 88 1.3E-29 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 BMD_4263 9290d296c221e6503295fc7c859daf11 301 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 301 92.091 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 Gene3D G3DSA:3.10.350.10 49 93 3.3E-14 T 13-10-2018 IPR036779 LysM domain superfamily BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 Gene3D G3DSA:3.10.50.10 318 374 2.3E-107 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 SMART SM00636 93 403 2.0E-26 T 13-10-2018 IPR011583 Chitinase II GO:0008061 BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 SUPERFAMILY SSF54106 2 45 9.42E-11 T 13-10-2018 BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 Gene3D G3DSA:3.10.350.10 2 48 9.8E-15 T 13-10-2018 IPR036779 LysM domain superfamily BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 Pfam PF01476 LysM domain 50 93 4.0E-10 T 13-10-2018 IPR018392 LysM domain BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 Pfam PF01476 LysM domain 4 45 7.2E-12 T 13-10-2018 IPR018392 LysM domain BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 SUPERFAMILY SSF51445 128 414 1.82E-45 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 Gene3D G3DSA:3.20.20.80 129 400 2.3E-107 T 13-10-2018 BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 Pfam PF00704 Glycosyl hydrolases family 18 177 400 1.3E-27 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 SMART SM00257 49 93 6.5E-13 T 13-10-2018 IPR018392 LysM domain BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 SMART SM00257 3 46 3.1E-12 T 13-10-2018 IPR018392 LysM domain BMD_1713 66d9e104cf7950cd517f9bee9dd6fe2c 420 SUPERFAMILY SSF54106 48 93 6.28E-10 T 13-10-2018 BMD_4840 2bd5eb1228f529b29be525a7b23dc842 320 SUPERFAMILY SSF102114 8 314 2.49E-54 T 13-10-2018 BMD_4840 2bd5eb1228f529b29be525a7b23dc842 320 Pfam PF04055 Radical SAM superfamily 52 214 3.3E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_4840 2bd5eb1228f529b29be525a7b23dc842 320 Gene3D G3DSA:3.80.30.20 50 246 6.1E-15 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BMD_4840 2bd5eb1228f529b29be525a7b23dc842 320 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 15 314 1.1E-134 T 13-10-2018 IPR005911 Protein YhcC-like GO:0051536 BMD_4840 2bd5eb1228f529b29be525a7b23dc842 320 SMART SM00729 32 259 3.7E-42 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_4840 2bd5eb1228f529b29be525a7b23dc842 320 Pfam PF16199 Radical_SAM C-terminal domain 220 303 1.9E-24 T 13-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 SUPERFAMILY SSF52141 3 221 3.49E-95 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 SMART SM00986 49 209 8.0E-38 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 213 2.3E-86 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 Gene3D G3DSA:3.40.470.10 1 224 1.0E-100 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 13-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 SMART SM00987 49 209 8.0E-38 T 13-10-2018 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 Pfam PF03167 Uracil DNA glycosylase superfamily 52 208 3.1E-27 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_5194 5aab296d5db3cf5573b6d6ea27c9b853 224 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 5 220 41.134 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 SMART SM00418 33 112 3.3E-29 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 Pfam PF01022 Bacterial regulatory protein, arsR family 40 87 4.3E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 57 75 - T 13-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 1.1E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 66 1.1E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 35 50 1.1E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 83 98 1.1E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 SUPERFAMILY SSF46785 19 110 2.05E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3163 e42e38532a31d90a0807cb8e1dfe4284 119 Gene3D G3DSA:1.10.10.10 2 119 3.9E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0783 22c691463ac133207b3c8daddc7e43a9 873 Pfam PF14398 YheC/D like ATP-grasp 622 862 9.5E-49 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D BMD_0783 22c691463ac133207b3c8daddc7e43a9 873 Pfam PF14395 Phage phiEco32-like COOH.NH2 ligase-type 2 182 432 2.0E-94 T 13-10-2018 IPR025681 Phage phiEco32-like COOH-NH2 ligase-type 2 BMD_0783 22c691463ac133207b3c8daddc7e43a9 873 SUPERFAMILY SSF56059 614 837 6.68E-15 T 13-10-2018 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 Gene3D G3DSA:3.90.110.10 150 316 2.6E-64 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 11 148 4.5E-47 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 9 317 47.385 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 PIRSF PIRSF000102 6 317 6.1E-118 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 SUPERFAMILY SSF51735 6 148 4.06E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 Gene3D G3DSA:3.40.50.720 7 149 6.3E-59 T 13-10-2018 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 151 316 1.0E-36 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 PRINTS PR00086 L-lactate dehydrogenase signature 36 60 3.3E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 PRINTS PR00086 L-lactate dehydrogenase signature 11 35 3.3E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 PRINTS PR00086 L-lactate dehydrogenase signature 176 189 3.3E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 PRINTS PR00086 L-lactate dehydrogenase signature 122 142 3.3E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 PRINTS PR00086 L-lactate dehydrogenase signature 146 164 3.3E-47 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 SUPERFAMILY SSF56327 149 315 1.73E-59 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 14 311 5.8E-135 T 13-10-2018 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 BMD_0524 7d14b66e9def2b254780da336ed8e2a8 318 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 178 184 - T 13-10-2018 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|Reactome: R-HSA-70268 BMD_1251 73e5ad9335776e682cb7cc7e431d150c 311 Pfam PF00326 Prolyl oligopeptidase family 115 308 2.3E-28 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BMD_1251 73e5ad9335776e682cb7cc7e431d150c 311 Gene3D G3DSA:3.40.50.1820 65 311 5.5E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1251 73e5ad9335776e682cb7cc7e431d150c 311 SUPERFAMILY SSF53474 67 308 6.1E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 Pfam PF08264 Anticodon-binding domain of tRNA 675 818 4.6E-31 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 40 51 2.6E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 549 558 2.6E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 382 397 2.6E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 509 522 2.6E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 220 243 2.6E-29 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 17 620 2.2E-198 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 SUPERFAMILY SSF52374 10 637 1.87E-139 T 13-10-2018 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 6 827 1.1E-295 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 Gene3D G3DSA:1.10.730.10 631 810 7.7E-51 T 13-10-2018 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 Gene3D G3DSA:3.40.50.620 14 615 3.7E-252 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 SUPERFAMILY SSF47323 645 878 2.62E-52 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 Gene3D G3DSA:3.90.740.10 196 388 3.7E-252 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 SUPERFAMILY SSF50677 198 384 7.53E-51 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_2718 95f8d0c8e8ac1cf1e527fa7ba4e3af76 1032 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 2 1018 13.879 T 13-10-2018 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 Pfam PF00455 DeoR C terminal sensor domain 76 230 2.2E-36 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 56 3.1E-15 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 SMART SM01134 71 232 2.8E-47 T 13-10-2018 BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 SUPERFAMILY SSF100950 73 231 2.93E-22 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.0E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.0E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 Gene3D G3DSA:1.10.10.10 1 53 1.3E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 SMART SM00420 6 58 5.6E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3515 726ad6acd95a8b998897acfdaf0d4c24 252 SUPERFAMILY SSF46785 4 61 4.23E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 237 279 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 SUPERFAMILY SSF46689 236 285 9.86E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 Pfam PF02311 AraC-like ligand binding domain 47 164 2.6E-11 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 SMART SM00342 200 283 9.9E-36 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 Pfam PF12833 Helix-turn-helix domain 206 284 8.9E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 Gene3D G3DSA:1.10.10.60 185 233 2.2E-14 T 13-10-2018 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 SUPERFAMILY SSF51215 53 169 1.7E-12 T 13-10-2018 IPR037923 Transcription regulator HTH-like BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 Gene3D G3DSA:2.60.120.280 40 172 7.0E-7 T 13-10-2018 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 SUPERFAMILY SSF46689 190 234 4.48E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0688 5137952208e35095bdce3e3dfe6f51c9 297 Gene3D G3DSA:1.10.10.60 234 288 8.9E-20 T 13-10-2018 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Gene3D G3DSA:2.60.120.560 1021 1189 1.2E-34 T 13-10-2018 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Gene3D G3DSA:2.60.120.560 358 517 1.3E-36 T 13-10-2018 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Gene3D G3DSA:2.115.10.20 694 864 1.7E-38 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 42 55 - T 13-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 SUPERFAMILY SSF75005 32 215 1.88E-74 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Gene3D G3DSA:2.60.120.560 865 1020 6.3E-48 T 13-10-2018 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Pfam PF06439 Domain of Unknown Function (DUF1080) 201 356 2.0E-8 T 13-10-2018 IPR010496 Domain of unknown function DUF1080 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Pfam PF06439 Domain of Unknown Function (DUF1080) 365 517 3.1E-6 T 13-10-2018 IPR010496 Domain of unknown function DUF1080 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Gene3D G3DSA:2.115.10.20 33 248 1.3E-80 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 SUPERFAMILY SSF75005 707 857 4.71E-29 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 SMART SM00640 42 979 2.8E-134 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 707 850 2.7E-28 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 42 214 2.2E-63 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 859 1013 2.3E-36 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal BMD_1574 b8b2ef6916d62c0e3768e97103bd7046 1192 SUPERFAMILY SSF49899 868 1019 5.14E-34 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 Pfam PF00512 His Kinase A (phospho-acceptor) domain 313 370 4.5E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 182 302 2.2E-25 T 13-10-2018 IPR000014 PAS domain BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 481 2.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 519 2.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 500 2.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 467 2.5E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 SUPERFAMILY SSF47384 307 371 2.55E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 SMART SM00086 254 296 2.8E-7 T 13-10-2018 IPR001610 PAC motif BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 SMART SM00387 416 522 3.6E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 Gene3D G3DSA:3.30.450.20 190 299 3.0E-25 T 13-10-2018 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 SMART SM00388 311 374 6.8E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 Gene3D G3DSA:3.30.565.10 375 526 1.5E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 417 520 1.8E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 SUPERFAMILY SSF55785 173 294 3.66E-21 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 SUPERFAMILY SSF55874 366 523 1.83E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 Gene3D G3DSA:1.10.287.130 300 372 1.1E-16 T 13-10-2018 BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 SMART SM00091 183 248 0.0018 T 13-10-2018 IPR000014 PAS domain BMD_1247 59a3704074a5a573397abb4efe34c1b6 527 Pfam PF08448 PAS fold 194 297 8.8E-15 T 13-10-2018 IPR013656 PAS fold-4 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 SMART SM00382 135 289 5.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Gene3D G3DSA:1.10.1790.10 831 927 5.2E-11 T 13-10-2018 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Gene3D G3DSA:1.10.1790.10 467 566 3.9E-16 T 13-10-2018 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Gene3D G3DSA:3.40.50.300 106 288 1.2E-41 T 13-10-2018 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 SUPERFAMILY SSF53062 572 686 1.16E-18 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Pfam PF03610 PTS system fructose IIA component 574 674 8.9E-12 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 208 223 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 SUPERFAMILY SSF63520 461 564 2.88E-19 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 SUPERFAMILY SSF63520 824 925 8.76E-16 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 SUPERFAMILY SSF52540 126 346 6.06E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1569 ed86bf823ca2282fd787854217eb357c 928 SUPERFAMILY SSF46785 21 68 4.42E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Pfam PF00874 PRD domain 477 563 7.7E-16 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Pfam PF00874 PRD domain 841 925 2.0E-13 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Pfam PF00158 Sigma-54 interaction domain 112 278 1.1E-47 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_1569 ed86bf823ca2282fd787854217eb357c 928 Gene3D G3DSA:3.40.50.510 569 705 2.8E-37 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BMD_4351 750c45459e9434be99c181adea62971a 524 Gene3D G3DSA:3.40.50.720 95 276 9.0E-115 T 13-10-2018 BMD_4351 750c45459e9434be99c181adea62971a 524 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 189 211 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BMD_4351 750c45459e9434be99c181adea62971a 524 Gene3D G3DSA:3.30.1330.90 315 450 5.7E-36 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BMD_4351 750c45459e9434be99c181adea62971a 524 Pfam PF01842 ACT domain 452 512 2.5E-7 T 13-10-2018 IPR002912 ACT domain BMD_4351 750c45459e9434be99c181adea62971a 524 Gene3D G3DSA:3.30.70.260 451 524 5.9E-21 T 13-10-2018 BMD_4351 750c45459e9434be99c181adea62971a 524 SUPERFAMILY SSF52283 14 126 4.91E-34 T 13-10-2018 BMD_4351 750c45459e9434be99c181adea62971a 524 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 141 168 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BMD_4351 750c45459e9434be99c181adea62971a 524 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 218 234 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BMD_4351 750c45459e9434be99c181adea62971a 524 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 310 1.6E-34 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BMD_4351 750c45459e9434be99c181adea62971a 524 SUPERFAMILY SSF143548 316 446 7.59E-36 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BMD_4351 750c45459e9434be99c181adea62971a 524 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 3 524 2.4E-212 T 13-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 BMD_4351 750c45459e9434be99c181adea62971a 524 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 278 2.1E-61 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BMD_4351 750c45459e9434be99c181adea62971a 524 SUPERFAMILY SSF51735 95 279 6.25E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4351 750c45459e9434be99c181adea62971a 524 Gene3D G3DSA:3.40.50.720 5 302 9.0E-115 T 13-10-2018 BMD_4351 750c45459e9434be99c181adea62971a 524 SUPERFAMILY SSF55021 442 521 2.5E-17 T 13-10-2018 BMD_4822 f605bc9ff9c12b2096470c30e72a3929 264 Gene3D G3DSA:3.90.1200.10 75 259 2.5E-21 T 13-10-2018 BMD_4822 f605bc9ff9c12b2096470c30e72a3929 264 Pfam PF01636 Phosphotransferase enzyme family 20 225 1.1E-20 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase BMD_4822 f605bc9ff9c12b2096470c30e72a3929 264 SUPERFAMILY SSF56112 3 225 1.99E-30 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 58 65 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 1.7E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 58 77 1.7E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 140 151 1.7E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 280 303 1.7E-26 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 13 315 1.3E-132 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 159 313 5.8E-60 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 Gene3D G3DSA:3.40.50.1370 143 311 2.7E-126 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 12 316 82.022 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 13 153 4.9E-54 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 SUPERFAMILY SSF53671 9 315 2.62E-112 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 56 70 4.0E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 294 305 4.0E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 129 143 4.0E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 232 242 4.0E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 89 102 4.0E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BMD_0684 82b0a3081edad67a9b34b3823f6f6b10 316 Gene3D G3DSA:3.40.50.1370 13 142 2.7E-126 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 Pfam PF01047 MarR family 28 85 2.4E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 131 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 97 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 77 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 45 61 7.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 SUPERFAMILY SSF46785 4 142 5.04E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 ProSitePatterns PS01117 MarR-type HTH domain signature. 60 94 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 SMART SM00347 21 121 2.7E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1613 2cf1cb100bd52cb01217b4584ddabd33 150 Gene3D G3DSA:1.10.10.10 2 145 3.6E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3524 24386a07b71b32a8d510ca476a8e5cc5 66 SMART SM00530 5 60 1.7E-19 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3524 24386a07b71b32a8d510ca476a8e5cc5 66 Gene3D G3DSA:1.10.260.40 1 65 2.8E-29 T 13-10-2018 BMD_3524 24386a07b71b32a8d510ca476a8e5cc5 66 Pfam PF01381 Helix-turn-helix 6 60 4.1E-19 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3524 24386a07b71b32a8d510ca476a8e5cc5 66 SUPERFAMILY SSF47413 2 63 1.45E-20 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2636 f099f926f7fffc8d41939c776b1f4790 370 Gene3D G3DSA:1.10.10.2840 251 370 3.7E-21 T 13-10-2018 BMD_2636 f099f926f7fffc8d41939c776b1f4790 370 Pfam PF05651 Putative sugar diacid recognition 5 136 2.9E-43 T 13-10-2018 IPR008599 Putative sugar diacid recognition BMD_2636 f099f926f7fffc8d41939c776b1f4790 370 Pfam PF13556 PucR C-terminal helix-turn-helix domain 310 367 6.2E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 Pfam PF13354 Beta-lactamase enzyme family 73 278 5.1E-33 T 13-10-2018 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 PRINTS PR00118 Beta-lactamase class A signature 159 183 6.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 PRINTS PR00118 Beta-lactamase class A signature 123 148 6.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 PRINTS PR00118 Beta-lactamase class A signature 238 253 6.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 PRINTS PR00118 Beta-lactamase class A signature 221 236 6.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 PRINTS PR00118 Beta-lactamase class A signature 52 76 6.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 PRINTS PR00118 Beta-lactamase class A signature 83 100 6.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 PRINTS PR00118 Beta-lactamase class A signature 185 210 6.2E-62 T 13-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 SUPERFAMILY SSF56601 51 305 3.87E-73 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 ProSitePatterns PS00146 Beta-lactamase class-A active site. 85 100 - T 13-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 BMD_3363 b8631cf9a2ca13a61833362b8c09c0fa 310 Gene3D G3DSA:3.40.710.10 37 305 1.6E-77 T 13-10-2018 BMD_4747 1f4b4e910807312f6ad67ee8da40daa3 198 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 195 28.341 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BMD_4747 1f4b4e910807312f6ad67ee8da40daa3 198 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 190 1.4E-65 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BMD_4747 1f4b4e910807312f6ad67ee8da40daa3 198 SUPERFAMILY SSF52540 1 193 2.02E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4747 1f4b4e910807312f6ad67ee8da40daa3 198 Gene3D G3DSA:3.40.50.300 1 197 3.5E-77 T 13-10-2018 BMD_4747 1f4b4e910807312f6ad67ee8da40daa3 198 Pfam PF01121 Dephospho-CoA kinase 3 182 3.9E-62 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 SUPERFAMILY SSF56276 5 113 2.51E-30 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 Gene3D G3DSA:3.30.360.110 1 61 1.8E-19 T 13-10-2018 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 116 25.27 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 Pfam PF01564 Spermine/spermidine synthase domain 187 363 7.7E-35 T 13-10-2018 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 Gene3D G3DSA:3.40.50.150 184 415 1.5E-57 T 13-10-2018 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 208 221 - T 13-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 Gene3D G3DSA:3.30.160.750 63 128 8.8E-15 T 13-10-2018 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 113 399 25.171 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 Pfam PF02675 S-adenosylmethionine decarboxylase 7 112 1.0E-30 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 SUPERFAMILY SSF53335 150 369 7.28E-53 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_2914 288c18f58d22e31a5efb5bb4e0b17eba 425 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 3 112 6.9E-34 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BMD_5020 bdba69a478cdbe5ae820204260a27335 421 SUPERFAMILY SSF63882 8 185 6.28E-50 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5020 bdba69a478cdbe5ae820204260a27335 421 Gene3D G3DSA:3.40.980.10 184 337 3.4E-116 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_5020 bdba69a478cdbe5ae820204260a27335 421 SUPERFAMILY SSF53218 186 331 3.8E-38 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_5020 bdba69a478cdbe5ae820204260a27335 421 Gene3D G3DSA:3.90.105.10 26 183 3.4E-116 T 13-10-2018 BMD_5020 bdba69a478cdbe5ae820204260a27335 421 Gene3D G3DSA:2.40.340.10 338 406 3.4E-116 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5020 bdba69a478cdbe5ae820204260a27335 421 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 323 3.6E-33 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_5020 bdba69a478cdbe5ae820204260a27335 421 Pfam PF00994 Probable molybdopterin binding domain 191 325 6.8E-26 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_5020 bdba69a478cdbe5ae820204260a27335 421 Gene3D G3DSA:2.170.190.11 50 150 3.4E-116 T 13-10-2018 BMD_5020 bdba69a478cdbe5ae820204260a27335 421 Pfam PF03454 MoeA C-terminal region (domain IV) 340 411 2.6E-13 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5020 bdba69a478cdbe5ae820204260a27335 421 SMART SM00852 189 327 1.0E-34 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_5020 bdba69a478cdbe5ae820204260a27335 421 SUPERFAMILY SSF63867 338 413 3.01E-15 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_5020 bdba69a478cdbe5ae820204260a27335 421 Pfam PF03453 MoeA N-terminal region (domain I and II) 12 176 4.7E-38 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_2973 149e9205ffea4dd26cafa5934536364c 214 SUPERFAMILY SSF51569 3 200 4.94E-62 T 13-10-2018 BMD_2973 149e9205ffea4dd26cafa5934536364c 214 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 4 203 5.4E-55 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BMD_2973 149e9205ffea4dd26cafa5934536364c 214 Pfam PF01081 KDPG and KHG aldolase 4 191 4.3E-42 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BMD_2973 149e9205ffea4dd26cafa5934536364c 214 Gene3D G3DSA:3.20.20.70 1 212 4.3E-74 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Gene3D G3DSA:3.30.70.3380 377 488 3.5E-44 T 13-10-2018 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 PRINTS PR00315 GTP-binding elongation factor signature 15 28 3.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 PRINTS PR00315 GTP-binding elongation factor signature 135 144 3.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 PRINTS PR00315 GTP-binding elongation factor signature 83 93 3.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 PRINTS PR00315 GTP-binding elongation factor signature 99 110 3.8E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 SUPERFAMILY SSF52540 9 214 1.98E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Gene3D G3DSA:2.40.30.10 195 294 2.9E-35 T 13-10-2018 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 SMART SM00838 410 495 1.2E-4 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 183 4.4E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 SUPERFAMILY SSF54980 408 503 3.17E-28 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Pfam PF00679 Elongation factor G C-terminus 408 495 1.8E-26 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Gene3D G3DSA:3.40.50.300 9 194 2.9E-75 T 13-10-2018 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 SUPERFAMILY SSF54980 301 379 8.27E-19 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Gene3D G3DSA:3.30.70.870 295 376 4.2E-36 T 13-10-2018 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 SUPERFAMILY SSF50447 175 297 1.26E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Pfam PF00009 Elongation factor Tu GTP binding domain 12 190 2.2E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Hamap MF_00071 Elongation factor 4 [lepA]. 1 607 314.494 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Pfam PF03144 Elongation factor Tu domain 2 214 284 3.1E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 TIGRFAM TIGR01393 lepA: elongation factor 4 12 605 0.0 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Pfam PF06421 GTP-binding protein LepA C-terminus 497 603 1.0E-52 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal BMD_4555 7d3d895c9ad7b10972ffe5f7213e75e3 607 Gene3D G3DSA:3.30.70.2570 489 563 7.7E-36 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 Gene3D G3DSA:4.10.320.10 115 166 5.1E-16 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 181 407 2.1E-80 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 SUPERFAMILY SSF47005 118 162 3.27E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 SUPERFAMILY SSF51230 1 91 3.27E-23 T 13-10-2018 IPR011053 Single hybrid motif BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 Pfam PF02817 e3 binding domain 123 158 2.1E-13 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 Gene3D G3DSA:2.40.50.100 1 102 6.3E-26 T 13-10-2018 BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 SUPERFAMILY SSF52777 181 408 2.85E-78 T 13-10-2018 BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 Gene3D G3DSA:3.30.559.10 167 405 1.0E-83 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BMD_1874 5f0cbea5b98c8266ae39af9f2a5f5520 408 Pfam PF00364 Biotin-requiring enzyme 4 75 2.8E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 PRINTS PR00046 Major sigma-70 factor signature 192 200 3.2E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 PRINTS PR00046 Major sigma-70 factor signature 316 328 3.2E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 PRINTS PR00046 Major sigma-70 factor signature 352 363 3.2E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 PRINTS PR00046 Major sigma-70 factor signature 168 181 3.2E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 PRINTS PR00046 Major sigma-70 factor signature 337 352 3.2E-32 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 10 377 34.311 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Pfam PF03979 Sigma-70 factor, region 1.1 17 90 3.6E-16 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Pfam PF04539 Sigma-70 region 3 223 299 6.6E-33 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 337 363 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Pfam PF00140 Sigma-70 factor, region 1.2 106 139 2.9E-18 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 SUPERFAMILY SSF88659 274 375 3.36E-30 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Pfam PF04542 Sigma-70 region 2 144 213 4.0E-22 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 140 376 2.6E-125 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Gene3D G3DSA:1.10.10.10 217 292 8.7E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Gene3D G3DSA:1.10.10.10 305 377 2.8E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 168 181 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Gene3D G3DSA:1.10.220.120 16 76 2.3E-9 T 13-10-2018 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 SUPERFAMILY SSF88659 217 290 2.8E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Pfam PF04545 Sigma-70, region 4 312 365 5.2E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Gene3D G3DSA:1.10.601.10 104 138 2.5E-12 T 13-10-2018 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 Gene3D G3DSA:1.10.601.10 139 216 4.8E-51 T 13-10-2018 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 140 365 8.5E-40 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_4528 b2e3574a40d653058d0291ba4e3794b2 377 SUPERFAMILY SSF88946 105 214 6.41E-55 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 Gene3D G3DSA:3.40.47.10 123 361 3.6E-115 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 Pfam PF00108 Thiolase, N-terminal domain 7 235 8.5E-47 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 PIRSF PIRSF000429 2 366 2.1E-100 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 Pfam PF02803 Thiolase, C-terminal domain 247 363 1.2E-33 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 SUPERFAMILY SSF53901 6 241 1.73E-49 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 Gene3D G3DSA:3.40.47.10 8 248 3.6E-115 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 363 5.4E-109 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_2484 9fdbea3ee35cedbd325ee9cd42977441 366 SUPERFAMILY SSF53901 244 364 5.55E-32 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2331 cfd45403c75339345dcc54bf46cc188a 218 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 2 214 3.7E-75 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 BMD_2331 cfd45403c75339345dcc54bf46cc188a 218 SUPERFAMILY SSF100950 2 215 4.07E-78 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_2331 cfd45403c75339345dcc54bf46cc188a 218 SMART SM00882 4 215 8.5E-71 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_2331 cfd45403c75339345dcc54bf46cc188a 218 Pfam PF01144 Coenzyme A transferase 8 214 1.2E-64 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_2331 cfd45403c75339345dcc54bf46cc188a 218 Gene3D G3DSA:3.40.1080.10 1 218 5.1E-82 T 13-10-2018 BMD_2331 cfd45403c75339345dcc54bf46cc188a 218 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 16 31 - T 13-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 BMD_0090 4f43eac5c9b67c8db3d0fb2170e960b1 255 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 37.681 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BMD_0090 4f43eac5c9b67c8db3d0fb2170e960b1 255 Gene3D G3DSA:3.30.420.40 1 88 9.6E-35 T 13-10-2018 BMD_0090 4f43eac5c9b67c8db3d0fb2170e960b1 255 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 4 249 1.7E-86 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BMD_0090 4f43eac5c9b67c8db3d0fb2170e960b1 255 SUPERFAMILY SSF53067 124 252 9.39E-41 T 13-10-2018 BMD_0090 4f43eac5c9b67c8db3d0fb2170e960b1 255 SUPERFAMILY SSF53067 1 122 1.09E-38 T 13-10-2018 BMD_0090 4f43eac5c9b67c8db3d0fb2170e960b1 255 Pfam PF03309 Type III pantothenate kinase 3 205 8.9E-74 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BMD_0090 4f43eac5c9b67c8db3d0fb2170e960b1 255 Gene3D G3DSA:3.30.420.40 89 255 1.7E-62 T 13-10-2018 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Pfam PF14492 Elongation Factor G, domain II 402 475 3.5E-35 T 13-10-2018 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 SUPERFAMILY SSF54980 601 688 5.76E-31 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 SUPERFAMILY SSF52540 6 280 5.93E-112 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Gene3D G3DSA:3.30.230.10 482 685 3.1E-95 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Pfam PF03764 Elongation factor G, domain IV 477 595 2.3E-48 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Gene3D G3DSA:2.40.30.10 293 403 1.3E-46 T 13-10-2018 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 180 3.4E-44 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 SMART SM00889 478 596 1.2E-74 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Pfam PF00679 Elongation factor G C-terminus 599 684 1.5E-31 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Pfam PF00009 Elongation factor Tu GTP binding domain 9 280 3.1E-70 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 SMART SM00838 598 685 2.2E-59 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Pfam PF03144 Elongation factor Tu domain 2 322 389 2.5E-16 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Gene3D G3DSA:3.30.70.870 404 481 6.8E-33 T 13-10-2018 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Hamap MF_00054_B Elongation factor G [fusA]. 6 689 113.642 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 SUPERFAMILY SSF50447 263 402 1.11E-36 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Gene3D G3DSA:3.30.70.240 602 672 3.1E-95 T 13-10-2018 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 SUPERFAMILY SSF54211 477 597 1.87E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 SUPERFAMILY SSF54980 400 478 9.35E-26 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 690 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 PRINTS PR00315 GTP-binding elongation factor signature 78 88 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 PRINTS PR00315 GTP-binding elongation factor signature 94 105 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 PRINTS PR00315 GTP-binding elongation factor signature 12 25 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 PRINTS PR00315 GTP-binding elongation factor signature 130 139 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 PRINTS PR00315 GTP-binding elongation factor signature 58 66 5.4E-17 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0131 183ec8ca12b9d19baae9be69a8fcee3f 692 Gene3D G3DSA:3.40.50.300 1 292 5.6E-114 T 13-10-2018 BMD_3799 8e3eee3e16095ab8bd53c21f0ada5969 221 Pfam PF04542 Sigma-70 region 2 20 83 7.4E-7 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3799 8e3eee3e16095ab8bd53c21f0ada5969 221 Pfam PF08281 Sigma-70, region 4 108 158 7.0E-10 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_3799 8e3eee3e16095ab8bd53c21f0ada5969 221 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 160 1.7E-13 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_3799 8e3eee3e16095ab8bd53c21f0ada5969 221 Gene3D G3DSA:1.10.10.10 105 163 6.3E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3799 8e3eee3e16095ab8bd53c21f0ada5969 221 SUPERFAMILY SSF88946 16 93 6.67E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3799 8e3eee3e16095ab8bd53c21f0ada5969 221 Gene3D G3DSA:1.10.1740.10 3 85 7.2E-9 T 13-10-2018 BMD_3799 8e3eee3e16095ab8bd53c21f0ada5969 221 SUPERFAMILY SSF88659 109 160 4.49E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_1836 752a600c7f0141f7d75605de005c9b7c 329 SUPERFAMILY SSF52540 13 261 1.36E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1836 752a600c7f0141f7d75605de005c9b7c 329 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1836 752a600c7f0141f7d75605de005c9b7c 329 Gene3D G3DSA:3.40.50.300 11 329 2.5E-101 T 13-10-2018 BMD_1836 752a600c7f0141f7d75605de005c9b7c 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 242 307 8.6E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_1836 752a600c7f0141f7d75605de005c9b7c 329 Pfam PF00005 ABC transporter 40 190 1.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1836 752a600c7f0141f7d75605de005c9b7c 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 327 1.3E-29 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_1836 752a600c7f0141f7d75605de005c9b7c 329 SMART SM00382 48 240 4.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0578 a834054641ca516f210d8b937e53e4d8 299 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0578 a834054641ca516f210d8b937e53e4d8 299 Gene3D G3DSA:3.40.50.300 1 230 2.5E-59 T 13-10-2018 BMD_0578 a834054641ca516f210d8b937e53e4d8 299 Pfam PF00005 ABC transporter 19 158 1.6E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0578 a834054641ca516f210d8b937e53e4d8 299 Pfam PF13732 Domain of unknown function (DUF4162) 212 294 7.8E-16 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 BMD_0578 a834054641ca516f210d8b937e53e4d8 299 SUPERFAMILY SSF52540 3 223 8.68E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0578 a834054641ca516f210d8b937e53e4d8 299 SMART SM00382 27 209 3.0E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4808 237e7f74c57359247c3b857c95c59cd6 161 Pfam PF06103 Bacterial protein of unknown function (DUF948) 8 94 3.1E-23 T 13-10-2018 IPR009293 Uncharacterised protein family UPF0478 BMD_4808 237e7f74c57359247c3b857c95c59cd6 161 SUPERFAMILY SSF58104 23 133 4.84E-5 T 13-10-2018 BMD_4808 237e7f74c57359247c3b857c95c59cd6 161 Gene3D G3DSA:1.10.287.950 12 139 2.2E-5 T 13-10-2018 BMD_4274 03e63662d02224c4e217e7b2175d3945 293 Gene3D G3DSA:3.40.50.720 1 167 3.8E-51 T 13-10-2018 BMD_4274 03e63662d02224c4e217e7b2175d3945 293 SUPERFAMILY SSF48179 168 288 1.19E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4274 03e63662d02224c4e217e7b2175d3945 293 Pfam PF02558 Ketopantoate reductase PanE/ApbA 4 148 4.9E-28 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain BMD_4274 03e63662d02224c4e217e7b2175d3945 293 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 172 287 8.3E-27 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain BMD_4274 03e63662d02224c4e217e7b2175d3945 293 SUPERFAMILY SSF51735 3 153 1.62E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4274 03e63662d02224c4e217e7b2175d3945 293 Gene3D G3DSA:1.10.1040.10 168 293 2.1E-41 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_4274 03e63662d02224c4e217e7b2175d3945 293 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 3 290 1.8E-64 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 BMD_1512 b1822ad542038307924737fb4e95cde2 395 Gene3D G3DSA:3.40.640.10 4 258 5.1E-95 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1512 b1822ad542038307924737fb4e95cde2 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 392 1.4E-144 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_1512 b1822ad542038307924737fb4e95cde2 395 TIGRFAM TIGR01328 met_gam_lyase: methionine gamma-lyase 8 394 1.9E-190 T 13-10-2018 IPR006237 L-methionine gamma-lyase GO:0018826 KEGG: 00270+4.4.1.11|KEGG: 00450+4.4.1.11|KEGG: 00920+4.4.1.2|MetaCyc: PWY-7793 BMD_1512 b1822ad542038307924737fb4e95cde2 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_1512 b1822ad542038307924737fb4e95cde2 395 PIRSF PIRSF001434 1 395 3.4E-148 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_1512 b1822ad542038307924737fb4e95cde2 395 Gene3D G3DSA:3.90.1150.10 261 395 1.3E-50 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1512 b1822ad542038307924737fb4e95cde2 395 SUPERFAMILY SSF53383 28 394 4.62E-121 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2766 3a4228cb0b2e78ccd1109a6d99f00073 121 Pfam PF02525 Flavodoxin-like fold 1 121 1.4E-38 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_2766 3a4228cb0b2e78ccd1109a6d99f00073 121 SUPERFAMILY SSF52218 1 121 4.72E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2766 3a4228cb0b2e78ccd1109a6d99f00073 121 Gene3D G3DSA:3.40.50.360 1 121 2.0E-43 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_4656 fce3399a7bc0f26645f359c41807d318 228 SUPERFAMILY SSF47781 19 93 4.13E-9 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_4656 fce3399a7bc0f26645f359c41807d318 228 Gene3D G3DSA:3.40.140.10 104 228 1.8E-47 T 13-10-2018 BMD_4656 fce3399a7bc0f26645f359c41807d318 228 Pfam PF04002 RadC-like JAB domain 108 226 2.2E-47 T 13-10-2018 IPR025657 RadC-like JAB domain BMD_4656 fce3399a7bc0f26645f359c41807d318 228 TIGRFAM TIGR00608 radc: DNA repair protein RadC 15 228 3.8E-84 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 BMD_4656 fce3399a7bc0f26645f359c41807d318 228 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 177 182 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site BMD_4656 fce3399a7bc0f26645f359c41807d318 228 Gene3D G3DSA:1.10.150.20 51 91 2.8E-6 T 13-10-2018 BMD_4656 fce3399a7bc0f26645f359c41807d318 228 SUPERFAMILY SSF102712 157 205 7.45E-6 T 13-10-2018 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 449 9.4E-66 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 Hamap MF_00186 Glycerol kinase [glpK]. 2 496 59.863 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 251 8.0E-89 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 Gene3D G3DSA:3.30.420.40 253 496 2.4E-94 T 13-10-2018 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 3 494 1.9E-227 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 PIRSF PIRSF000538 2 495 5.8E-180 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 Gene3D G3DSA:3.30.420.40 1 252 8.3E-112 T 13-10-2018 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 361 381 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 SUPERFAMILY SSF53067 254 493 3.63E-89 T 13-10-2018 BMD_0534 4c35c73b33031a220e34539b49d57a77 496 SUPERFAMILY SSF53067 4 254 3.35E-96 T 13-10-2018 BMD_4350 275f22a01cbe6d46f2e3f47e05203613 191 PIRSF PIRSF037778 3 190 3.4E-46 T 13-10-2018 IPR025720 ECF transporter, Riboflavin transporter RibU GO:0005886|GO:0032217|GO:0032218 BMD_4350 275f22a01cbe6d46f2e3f47e05203613 191 Pfam PF12822 ECF transporter, substrate-specific component 8 177 4.3E-26 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 BMD_4350 275f22a01cbe6d46f2e3f47e05203613 191 Gene3D G3DSA:1.10.1760.20 1 187 1.9E-53 T 13-10-2018 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 450 733 26.149 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 185 401 1.3E-55 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 499 719 3.4E-52 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Gene3D G3DSA:1.20.1640.10 554 745 6.9E-8 T 13-10-2018 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 SUPERFAMILY SSF82866 213 416 2.49E-36 T 13-10-2018 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Pfam PF07549 SecD/SecF GG Motif 472 499 6.2E-7 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Gene3D G3DSA:3.30.70.3400 34 123 8.0E-23 T 13-10-2018 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Pfam PF02355 Protein export membrane protein 246 407 1.2E-14 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Pfam PF02355 Protein export membrane protein 554 730 3.2E-65 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 34 408 3.9E-104 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 SUPERFAMILY SSF82866 556 734 5.75E-36 T 13-10-2018 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 PRINTS PR01755 Bacterial translocase SecF protein signature 670 685 6.0E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 PRINTS PR01755 Bacterial translocase SecF protein signature 477 492 6.0E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 PRINTS PR01755 Bacterial translocase SecF protein signature 587 601 6.0E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 PRINTS PR01755 Bacterial translocase SecF protein signature 635 653 6.0E-25 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Gene3D G3DSA:1.20.1640.10 224 424 3.9E-14 T 13-10-2018 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 479 722 2.8E-69 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BMD_4620 3b61f6c270ada6a03c474aea6aa070d2 745 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 422 34.48 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 4.2E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 4.2E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 4.2E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 28 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 SMART SM00422 3 72 3.4E-21 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 Gene3D G3DSA:1.10.1660.10 1 124 1.3E-33 T 13-10-2018 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 Pfam PF13411 MerR HTH family regulatory protein 3 70 5.8E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3286 5847e64d9a11a32d42f2761875ed039f 127 SUPERFAMILY SSF46955 2 113 6.96E-29 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_2086 c996660bdf5f032636feeaec15c50f08 250 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.1E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2086 c996660bdf5f032636feeaec15c50f08 250 SUPERFAMILY SSF100950 75 231 8.27E-33 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_2086 c996660bdf5f032636feeaec15c50f08 250 Pfam PF00455 DeoR C terminal sensor domain 75 229 8.1E-47 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain BMD_2086 c996660bdf5f032636feeaec15c50f08 250 SUPERFAMILY SSF46785 5 61 4.73E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2086 c996660bdf5f032636feeaec15c50f08 250 Gene3D G3DSA:1.10.10.10 1 55 2.3E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2086 c996660bdf5f032636feeaec15c50f08 250 SMART SM00420 6 58 8.0E-18 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2086 c996660bdf5f032636feeaec15c50f08 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 3.9E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2086 c996660bdf5f032636feeaec15c50f08 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 3.9E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2086 c996660bdf5f032636feeaec15c50f08 250 SMART SM01134 73 231 8.2E-64 T 13-10-2018 BMD_2086 c996660bdf5f032636feeaec15c50f08 250 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BMD_1783 41a7d05843f1bb6ae42a7cc5e8854885 278 SUPERFAMILY SSF52091 164 272 4.12E-15 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1783 41a7d05843f1bb6ae42a7cc5e8854885 278 Gene3D G3DSA:3.30.750.24 161 277 1.7E-32 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1783 41a7d05843f1bb6ae42a7cc5e8854885 278 Pfam PF01740 STAS domain 169 270 7.8E-12 T 13-10-2018 IPR002645 STAS domain BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 Gene3D G3DSA:1.10.1040.10 166 296 1.9E-49 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 297 6.6E-148 T 13-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 Gene3D G3DSA:3.40.50.720 1 165 8.1E-49 T 13-10-2018 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 166 274 5.2E-24 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 153 1.7E-41 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 SMART SM01350 166 297 1.7E-6 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 SUPERFAMILY SSF48179 164 296 1.02E-40 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 19 4.6E-26 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 230 257 4.6E-26 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 155 183 4.6E-26 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 58 87 4.6E-26 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_3266 fa85d74891cf4756371359bdb5b1c91f 297 SUPERFAMILY SSF51735 1 153 1.84E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3336 0330a4c3cc89d94ee9d1f05bd270d4f4 253 Gene3D G3DSA:3.40.50.300 1 245 6.3E-64 T 13-10-2018 BMD_3336 0330a4c3cc89d94ee9d1f05bd270d4f4 253 SUPERFAMILY SSF52540 3 225 2.87E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3336 0330a4c3cc89d94ee9d1f05bd270d4f4 253 SMART SM00382 32 220 3.4E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3336 0330a4c3cc89d94ee9d1f05bd270d4f4 253 Pfam PF00005 ABC transporter 23 171 6.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2360 834bd1bc1764d5cc440f46252798f496 113 Gene3D G3DSA:3.40.50.800 6 113 9.6E-30 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily BMD_2360 834bd1bc1764d5cc440f46252798f496 113 Pfam PF03129 Anticodon binding domain 19 105 6.7E-21 T 13-10-2018 IPR004154 Anticodon-binding BMD_2360 834bd1bc1764d5cc440f46252798f496 113 SUPERFAMILY SSF52954 5 109 2.27E-28 T 13-10-2018 BMD_4156 1ffda85a0819db44e583872b6a2e75a4 142 SUPERFAMILY SSF50341 2 138 1.83E-36 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BMD_4156 1ffda85a0819db44e583872b6a2e75a4 142 Gene3D G3DSA:2.30.30.40 4 129 2.2E-39 T 13-10-2018 BMD_4156 1ffda85a0819db44e583872b6a2e75a4 142 Pfam PF01584 CheW-like domain 3 136 6.6E-34 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BMD_4156 1ffda85a0819db44e583872b6a2e75a4 142 SMART SM00260 1 135 7.3E-33 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BMD_4156 1ffda85a0819db44e583872b6a2e75a4 142 Gene3D G3DSA:2.40.50.180 21 130 2.2E-39 T 13-10-2018 BMD_2991 3881670757ad5d3da4e6f76a2799c545 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.53 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2991 3881670757ad5d3da4e6f76a2799c545 100 SUPERFAMILY SSF54111 2 100 1.11E-45 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2991 3881670757ad5d3da4e6f76a2799c545 100 Pfam PF00547 Urease, gamma subunit 2 99 2.0E-46 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2991 3881670757ad5d3da4e6f76a2799c545 100 PIRSF PIRSF001223 1 100 4.8E-53 T 13-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2991 3881670757ad5d3da4e6f76a2799c545 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 7.0E-40 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2991 3881670757ad5d3da4e6f76a2799c545 100 Gene3D G3DSA:3.30.280.10 1 100 3.5E-48 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2991 3881670757ad5d3da4e6f76a2799c545 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 1.7E-49 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_3367 1b1dbf49c51c11133782cf8b4372851d 188 SUPERFAMILY SSF46955 5 87 3.3E-9 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_3367 1b1dbf49c51c11133782cf8b4372851d 188 Gene3D G3DSA:1.10.1660.10 1 76 1.8E-8 T 13-10-2018 BMD_3367 1b1dbf49c51c11133782cf8b4372851d 188 Pfam PF13411 MerR HTH family regulatory protein 6 73 2.6E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_4823 808081106c3e90f801f9780daf6734f8 713 Gene3D G3DSA:3.20.20.80 202 623 8.4E-173 T 13-10-2018 BMD_4823 808081106c3e90f801f9780daf6734f8 713 Pfam PF00128 Alpha amylase, catalytic domain 375 576 9.8E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_4823 808081106c3e90f801f9780daf6734f8 713 TIGRFAM TIGR02104 pulA_typeI: pullulanase, type I 94 687 7.6E-243 T 13-10-2018 IPR011840 Pullulanase, type I BMD_4823 808081106c3e90f801f9780daf6734f8 713 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 106 183 1.7E-11 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BMD_4823 808081106c3e90f801f9780daf6734f8 713 SUPERFAMILY SSF81296 98 198 1.35E-20 T 13-10-2018 IPR014756 Immunoglobulin E-set BMD_4823 808081106c3e90f801f9780daf6734f8 713 Gene3D G3DSA:2.60.40.1180 624 712 3.9E-16 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_4823 808081106c3e90f801f9780daf6734f8 713 SUPERFAMILY SSF51445 202 623 1.27E-121 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_4823 808081106c3e90f801f9780daf6734f8 713 SMART SM00642 221 614 6.2E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_4823 808081106c3e90f801f9780daf6734f8 713 Gene3D G3DSA:2.60.40.2320 1 96 8.7E-27 T 13-10-2018 BMD_4823 808081106c3e90f801f9780daf6734f8 713 Gene3D G3DSA:2.60.40.10 97 201 7.8E-24 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 Pfam PF00005 ABC transporter 304 428 1.3E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 SMART SM00382 312 484 1.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 SMART SM00382 28 169 2.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 Pfam PF12848 ABC transporter 164 227 3.0E-7 T 13-10-2018 IPR032781 ABC-transporter extension domain BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 Pfam PF00005 ABC transporter 23 67 5.6E-10 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 Gene3D G3DSA:3.40.50.300 88 223 5.4E-28 T 13-10-2018 BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 SUPERFAMILY SSF52540 3 187 2.63E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 Gene3D G3DSA:3.40.50.300 2 87 5.2E-13 T 13-10-2018 BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 Gene3D G3DSA:3.40.50.300 250 502 9.2E-52 T 13-10-2018 BMD_2736 9fb2530d43bcfba9f98720486b10323d 542 SUPERFAMILY SSF52540 268 473 3.38E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5174 6fd9508cac7e4f58b8daabfb21dde41f 317 SUPERFAMILY SSF51658 82 266 3.89E-17 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_5174 6fd9508cac7e4f58b8daabfb21dde41f 317 TIGRFAM TIGR00629 uvde: UV damage endonuclease UvdE 1 301 8.5E-108 T 13-10-2018 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 BMD_5174 6fd9508cac7e4f58b8daabfb21dde41f 317 Pfam PF03851 UV-endonuclease UvdE 5 273 5.2E-113 T 13-10-2018 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 BMD_5174 6fd9508cac7e4f58b8daabfb21dde41f 317 Hamap MF_00606 UV DNA damage endonuclease [uvsE]. 12 303 38.804 T 13-10-2018 IPR023520 UV-endonuclease UvdE, bacterial GO:0004519|GO:0009411 BMD_5174 6fd9508cac7e4f58b8daabfb21dde41f 317 Gene3D G3DSA:3.20.20.150 2 307 4.1E-97 T 13-10-2018 BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 SUPERFAMILY SSF52540 3 243 1.64E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 Gene3D G3DSA:2.40.50.140 284 351 1.5E-22 T 13-10-2018 BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 Gene3D G3DSA:3.40.50.300 1 239 2.0E-74 T 13-10-2018 BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 SUPERFAMILY SSF50331 237 366 1.8E-22 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 Pfam PF00005 ABC transporter 21 162 8.9E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 SMART SM00382 29 217 7.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2367 0b2d0377b08dc5986d1601276eb6411d 382 Gene3D G3DSA:2.40.50.100 240 364 1.5E-22 T 13-10-2018 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 SMART SM00382 56 227 3.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 Gene3D G3DSA:3.30.250.10 267 325 1.0E-25 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 SUPERFAMILY SSF52540 2 266 3.94E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 Hamap MF_00268 Protein RecA [recA]. 4 328 52.106 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 ProSitePatterns PS00321 recA signature. 212 220 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 PRINTS PR00142 RecA protein signature 209 237 7.6E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 PRINTS PR00142 RecA protein signature 242 271 7.6E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 PRINTS PR00142 RecA protein signature 92 121 7.6E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 PRINTS PR00142 RecA protein signature 126 155 7.6E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 PRINTS PR00142 RecA protein signature 296 313 7.6E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 PRINTS PR00142 RecA protein signature 164 193 7.6E-86 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 SUPERFAMILY SSF54752 267 323 4.32E-21 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 Pfam PF00154 recA bacterial DNA recombination protein 7 267 3.1E-142 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 3 321 6.5E-170 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_1726 c0b03f3d18271860d0f3f1c43b2f62af 345 Gene3D G3DSA:3.40.50.300 25 266 2.3E-77 T 13-10-2018 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 Pfam PF02910 Fumarate reductase flavoprotein C-term 452 579 2.2E-41 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 Pfam PF00890 FAD binding domain 6 392 1.9E-87 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 TIGRFAM TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 6 579 7.1E-282 T 13-10-2018 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 39 48 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 Gene3D G3DSA:1.20.58.100 422 539 4.7E-34 T 13-10-2018 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 Gene3D G3DSA:3.90.700.10 258 367 1.5E-124 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 SUPERFAMILY SSF46977 444 584 7.72E-44 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 SUPERFAMILY SSF51905 6 426 5.68E-64 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 SUPERFAMILY SSF56425 231 353 4.49E-31 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 PIRSF PIRSF000171 341 577 5.9E-15 T 13-10-2018 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 PIRSF PIRSF000171 1 240 4.2E-19 T 13-10-2018 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 396 411 9.1E-6 T 13-10-2018 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 9.1E-6 T 13-10-2018 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 Gene3D G3DSA:3.50.50.60 6 403 1.5E-124 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.3E-8 T 13-10-2018 BMD_4710 7bbcc6cbfc4aee75dadf72568c53c2a1 595 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 356 378 2.3E-8 T 13-10-2018 BMD_1990 63812c8d55501819fbf139097bbde1da 427 SMART SM00388 206 269 1.2E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1990 63812c8d55501819fbf139097bbde1da 427 Pfam PF08448 PAS fold 79 192 1.2E-11 T 13-10-2018 IPR013656 PAS fold-4 BMD_1990 63812c8d55501819fbf139097bbde1da 427 Gene3D G3DSA:3.30.565.10 269 422 4.1E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1990 63812c8d55501819fbf139097bbde1da 427 Gene3D G3DSA:3.30.450.20 60 203 3.2E-15 T 13-10-2018 BMD_1990 63812c8d55501819fbf139097bbde1da 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 377 6.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1990 63812c8d55501819fbf139097bbde1da 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 396 6.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1990 63812c8d55501819fbf139097bbde1da 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 415 6.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1990 63812c8d55501819fbf139097bbde1da 427 PRINTS PR00344 Bacterial sensor protein C-terminal signature 349 363 6.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1990 63812c8d55501819fbf139097bbde1da 427 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 416 2.5E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1990 63812c8d55501819fbf139097bbde1da 427 SUPERFAMILY SSF47384 200 270 7.26E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1990 63812c8d55501819fbf139097bbde1da 427 SUPERFAMILY SSF55785 66 189 5.06E-11 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1990 63812c8d55501819fbf139097bbde1da 427 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 72 196 7.2E-7 T 13-10-2018 IPR000014 PAS domain BMD_1990 63812c8d55501819fbf139097bbde1da 427 SUPERFAMILY SSF55874 259 419 2.36E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1990 63812c8d55501819fbf139097bbde1da 427 Pfam PF00512 His Kinase A (phospho-acceptor) domain 208 268 1.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1990 63812c8d55501819fbf139097bbde1da 427 Gene3D G3DSA:1.10.287.130 209 266 3.3E-17 T 13-10-2018 BMD_1990 63812c8d55501819fbf139097bbde1da 427 SMART SM00387 311 418 9.4E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4557 01a3d614a7908e89b91e2539ab287ac4 370 Gene3D G3DSA:3.40.50.1450 1 296 3.5E-119 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily BMD_4557 01a3d614a7908e89b91e2539ab287ac4 370 TIGRFAM TIGR01441 GPR: GPR endopeptidase 10 370 4.6E-180 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 BMD_4557 01a3d614a7908e89b91e2539ab287ac4 370 ProDom PD041835 PROTEASE GERMINATION HYDROLASE SPORE GPR ENDOPEPTIDASE PROTEINASE ZYMOGEN PRECURSOR PEPTIDASE 9 370 0.0 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 BMD_4557 01a3d614a7908e89b91e2539ab287ac4 370 SUPERFAMILY SSF53163 2 370 3.01E-133 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily BMD_4557 01a3d614a7908e89b91e2539ab287ac4 370 PIRSF PIRSF019549 3 370 5.7E-188 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 BMD_4557 01a3d614a7908e89b91e2539ab287ac4 370 Hamap MF_00626 Germination protease [gpr]. 1 370 155.771 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 BMD_4557 01a3d614a7908e89b91e2539ab287ac4 370 Pfam PF03418 Germination protease 17 369 2.1E-188 T 13-10-2018 IPR005080 Peptidase A25, germination protease GO:0006508|GO:0008233|GO:0009847 BMD_2072 00b263e99be0896a976618e3a972b599 134 Pfam PF04138 GtrA-like protein 10 124 2.7E-28 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 BMD_4108 2dbd68ced79a5b9ee8a793dc3418301f 194 PIRSF PIRSF000847 1 194 1.5E-48 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BMD_4108 2dbd68ced79a5b9ee8a793dc3418301f 194 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 59 81 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BMD_4108 2dbd68ced79a5b9ee8a793dc3418301f 194 Gene3D G3DSA:1.20.120.1760 3 181 1.4E-8 T 13-10-2018 BMD_4108 2dbd68ced79a5b9ee8a793dc3418301f 194 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 81 1.7E-17 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BMD_4108 2dbd68ced79a5b9ee8a793dc3418301f 194 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 190 3.6E-60 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BMD_2668 bcd855c0df2adf6ccbe8f9db9406de83 288 Pfam PF14412 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH 144 231 6.9E-15 T 13-10-2018 IPR032871 AHH domain-containing protein BMD_1861 a7c118514ccd3988f379cd780fa717d5 312 PIRSF PIRSF000292 1 309 5.9E-106 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BMD_1861 a7c118514ccd3988f379cd780fa717d5 312 SUPERFAMILY SSF49503 119 251 1.22E-43 T 13-10-2018 IPR008972 Cupredoxin BMD_1861 a7c118514ccd3988f379cd780fa717d5 312 Gene3D G3DSA:1.10.287.90 25 109 1.9E-30 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1861 a7c118514ccd3988f379cd780fa717d5 312 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 145 220 2.0E-6 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1861 a7c118514ccd3988f379cd780fa717d5 312 SUPERFAMILY SSF81464 13 112 1.8E-19 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1861 a7c118514ccd3988f379cd780fa717d5 312 Gene3D G3DSA:2.60.40.420 110 274 1.2E-46 T 13-10-2018 IPR008972 Cupredoxin BMD_1861 a7c118514ccd3988f379cd780fa717d5 312 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 43 103 2.0E-5 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3017 3167b1943f0c12bf3c3b7f52796630ea 61 Pfam PF00210 Ferritin-like domain 1 53 1.9E-9 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BMD_3017 3167b1943f0c12bf3c3b7f52796630ea 61 Gene3D G3DSA:1.20.1260.10 1 60 4.6E-14 T 13-10-2018 IPR012347 Ferritin-like BMD_3017 3167b1943f0c12bf3c3b7f52796630ea 61 SUPERFAMILY SSF47240 1 53 6.9E-12 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_4828 41d2bd78d71aee43feeda8a18e2fd128 73 Pfam PF08220 DeoR-like helix-turn-helix domain 11 53 5.5E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_4828 41d2bd78d71aee43feeda8a18e2fd128 73 SUPERFAMILY SSF46785 11 61 2.64E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4828 41d2bd78d71aee43feeda8a18e2fd128 73 SMART SM00420 11 56 0.0039 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_4828 41d2bd78d71aee43feeda8a18e2fd128 73 Gene3D G3DSA:1.10.10.10 10 72 1.9E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 366 394 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 Gene3D G3DSA:3.40.50.10710 207 357 1.6E-183 T 13-10-2018 BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 Hamap MF_01491 Ribonuclease J [rnj]. 3 557 46.43 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 365 409 1.2E-8 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 Gene3D G3DSA:3.10.20.580 451 557 4.6E-37 T 13-10-2018 BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 Gene3D G3DSA:3.60.15.10 11 444 1.6E-183 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 9 555 1.1E-200 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 Pfam PF00753 Metallo-beta-lactamase superfamily 21 166 1.2E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 PIRSF PIRSF004803 1 557 6.4E-238 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 SMART SM00849 20 214 2.1E-28 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1554 77a0e00e8ca13b97b65059aac77e90c4 557 SUPERFAMILY SSF56281 9 426 4.37E-98 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Pfam PF14450 Cell division protein FtsA 205 366 7.7E-23 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 SUPERFAMILY SSF53067 198 368 1.09E-40 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Gene3D G3DSA:3.30.420.40 10 362 2.2E-114 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Hamap MF_02033 Cell division protein FtsA [ftsA]. 3 430 30.979 T 13-10-2018 IPR020823 Cell division protein FtsA BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 PIRSF PIRSF003101 1 430 2.5E-151 T 13-10-2018 IPR020823 Cell division protein FtsA BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Pfam PF14450 Cell division protein FtsA 9 187 2.1E-10 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Pfam PF02491 SHS2 domain inserted in FTSA 81 160 2.2E-29 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Gene3D G3DSA:3.30.420.40 195 349 2.2E-114 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Gene3D G3DSA:3.30.1490.110 83 167 2.2E-114 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 SUPERFAMILY SSF53067 6 194 4.86E-62 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 Gene3D G3DSA:3.90.640.10 233 298 2.2E-114 T 13-10-2018 BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 7 369 7.0E-129 T 13-10-2018 IPR020823 Cell division protein FtsA BMD_4261 f0fa30e98d074a75291ca3e03049651b 431 SMART SM00842 7 194 2.1E-100 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 BMD_4554 7dc1b43542eb13981e366d3ab3b8201b 379 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 4 367 1.8E-127 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 BMD_4554 7dc1b43542eb13981e366d3ab3b8201b 379 Pfam PF06969 HemN C-terminal domain 302 366 2.8E-15 T 13-10-2018 IPR010723 HemN, C-terminal BMD_4554 7dc1b43542eb13981e366d3ab3b8201b 379 SMART SM00729 2 222 3.1E-58 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_4554 7dc1b43542eb13981e366d3ab3b8201b 379 SUPERFAMILY SSF102114 5 376 1.7E-119 T 13-10-2018 BMD_4554 7dc1b43542eb13981e366d3ab3b8201b 379 Pfam PF04055 Radical SAM superfamily 8 176 1.2E-24 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_4554 7dc1b43542eb13981e366d3ab3b8201b 379 Gene3D G3DSA:3.80.30.20 3 301 4.5E-103 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BMD_2109 115b7dd1853a5aefd2d3ea43938bcdef 287 Pfam PF08245 Mur ligase middle domain 115 277 4.9E-37 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_2109 115b7dd1853a5aefd2d3ea43938bcdef 287 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 113 136 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 BMD_2109 115b7dd1853a5aefd2d3ea43938bcdef 287 SUPERFAMILY SSF53623 108 258 3.4E-48 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_2109 115b7dd1853a5aefd2d3ea43938bcdef 287 Pfam PF01225 Mur ligase family, catalytic domain 24 73 1.2E-7 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BMD_2109 115b7dd1853a5aefd2d3ea43938bcdef 287 Gene3D G3DSA:3.40.1390.10 5 105 9.4E-19 T 13-10-2018 BMD_2109 115b7dd1853a5aefd2d3ea43938bcdef 287 SUPERFAMILY SSF63418 17 104 2.75E-16 T 13-10-2018 IPR035911 MurE/MurF, N-terminal BMD_2109 115b7dd1853a5aefd2d3ea43938bcdef 287 Gene3D G3DSA:3.40.1190.10 107 285 1.9E-51 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Pfam PF01739 CheR methyltransferase, SAM binding domain 281 475 5.1E-55 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Gene3D G3DSA:3.40.50.150 279 480 1.1E-63 T 13-10-2018 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SUPERFAMILY SSF55785 854 961 7.68E-17 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SUPERFAMILY SSF55874 1045 1185 6.68E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 PRINTS PR00996 Glutamate methyltransferase family signature 418 432 1.2E-24 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 PRINTS PR00996 Glutamate methyltransferase family signature 234 247 1.2E-24 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 PRINTS PR00996 Glutamate methyltransferase family signature 315 335 1.2E-24 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 PRINTS PR00996 Glutamate methyltransferase family signature 351 367 1.2E-24 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 PRINTS PR00996 Glutamate methyltransferase family signature 437 460 1.2E-24 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Pfam PF00512 His Kinase A (phospho-acceptor) domain 974 1035 1.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Pfam PF13426 PAS domain 856 958 2.9E-13 T 13-10-2018 IPR000014 PAS domain BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Gene3D G3DSA:3.30.450.20 715 847 6.9E-8 T 13-10-2018 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1081 1185 3.3E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SMART SM00086 917 959 3.8E-5 T 13-10-2018 IPR001610 PAC motif BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SMART SM00388 974 1037 4.6E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Pfam PF03705 CheR methyltransferase, all-alpha domain 215 263 1.4E-10 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Gene3D G3DSA:3.30.450.20 848 972 5.3E-22 T 13-10-2018 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SUPERFAMILY SSF52738 20 205 6.8E-50 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Gene3D G3DSA:1.10.155.10 205 275 2.8E-5 T 13-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 853 965 5.1E-10 T 13-10-2018 IPR000014 PAS domain BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SUPERFAMILY SSF53335 280 477 6.93E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SMART SM00138 212 478 3.8E-74 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Pfam PF01339 CheB methylesterase 24 197 7.9E-48 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SMART SM00387 1079 1186 5.2E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Gene3D G3DSA:1.10.287.130 977 1034 6.3E-16 T 13-10-2018 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SUPERFAMILY SSF47384 963 1035 4.71E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Gene3D G3DSA:3.30.565.10 1038 1186 5.2E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Gene3D G3DSA:3.40.50.180 14 204 2.1E-57 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SUPERFAMILY SSF55785 743 845 9.42E-5 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 SUPERFAMILY SSF47757 204 282 1.18E-11 T 13-10-2018 BMD_2242 d48de1043752dcb2506fa16161c1fb3a 1186 Pfam PF13596 PAS domain 731 836 2.7E-24 T 13-10-2018 BMD_2378 e1b601b0bf79f2c5688b6f7a35e7b41a 267 Pfam PF12697 Alpha/beta hydrolase family 23 258 1.8E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2378 e1b601b0bf79f2c5688b6f7a35e7b41a 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 210 224 5.1E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2378 e1b601b0bf79f2c5688b6f7a35e7b41a 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 46 61 5.1E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2378 e1b601b0bf79f2c5688b6f7a35e7b41a 267 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 5.1E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2378 e1b601b0bf79f2c5688b6f7a35e7b41a 267 SUPERFAMILY SSF53474 4 264 1.01E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2378 e1b601b0bf79f2c5688b6f7a35e7b41a 267 Gene3D G3DSA:3.40.50.1820 2 265 8.2E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 SUPERFAMILY SSF51735 66 306 2.36E-80 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 77 304 7.2E-63 T 13-10-2018 BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 203 231 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 86 1.9E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 155 1.9E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 206 1.9E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 237 254 1.9E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 235 1.9E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 269 289 1.9E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 196 204 2.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 155 2.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 216 235 2.2E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3497 5ce5e07fc5f72faa555017ba24ff3610 309 Gene3D G3DSA:3.40.50.720 24 307 9.9E-85 T 13-10-2018 BMD_2336 9950975411652f00bf65dfd1daa78d1a 485 SUPERFAMILY SSF53720 6 485 8.64E-158 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_2336 9950975411652f00bf65dfd1daa78d1a 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_2336 9950975411652f00bf65dfd1daa78d1a 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_2336 9950975411652f00bf65dfd1daa78d1a 485 Gene3D G3DSA:3.40.309.10 259 450 1.2E-162 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_2336 9950975411652f00bf65dfd1daa78d1a 485 Gene3D G3DSA:3.40.605.10 15 479 1.2E-162 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_2336 9950975411652f00bf65dfd1daa78d1a 485 Pfam PF00171 Aldehyde dehydrogenase family 19 481 9.1E-162 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_4212 508d50c0aef49c932947151bef80ecfa 682 SMART SM00487 253 442 1.3E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_4212 508d50c0aef49c932947151bef80ecfa 682 SUPERFAMILY SSF50249 7 167 6.51E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4212 508d50c0aef49c932947151bef80ecfa 682 SMART SM00490 323 401 0.37 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4212 508d50c0aef49c932947151bef80ecfa 682 SMART SM00490 492 573 2.0E-21 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4212 508d50c0aef49c932947151bef80ecfa 682 Gene3D G3DSA:3.40.50.300 441 613 1.3E-56 T 13-10-2018 BMD_4212 508d50c0aef49c932947151bef80ecfa 682 Gene3D G3DSA:3.40.50.300 197 434 8.5E-86 T 13-10-2018 BMD_4212 508d50c0aef49c932947151bef80ecfa 682 Pfam PF17191 RecG wedge domain 8 164 7.6E-17 T 13-10-2018 IPR033454 RecG, wedge domain BMD_4212 508d50c0aef49c932947151bef80ecfa 682 SUPERFAMILY SSF52540 173 436 1.14E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4212 508d50c0aef49c932947151bef80ecfa 682 Gene3D G3DSA:2.40.50.140 45 140 1.4E-10 T 13-10-2018 BMD_4212 508d50c0aef49c932947151bef80ecfa 682 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 27 648 3.6E-248 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 BMD_4212 508d50c0aef49c932947151bef80ecfa 682 Pfam PF00270 DEAD/DEAH box helicase 259 415 6.3E-17 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_4212 508d50c0aef49c932947151bef80ecfa 682 Pfam PF00271 Helicase conserved C-terminal domain 452 572 8.5E-20 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4212 508d50c0aef49c932947151bef80ecfa 682 SUPERFAMILY SSF52540 436 640 2.6E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1981 916d78480df4f03fe9ab0746f9408115 645 Gene3D G3DSA:3.40.720.10 243 551 1.0E-79 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_1981 916d78480df4f03fe9ab0746f9408115 645 SUPERFAMILY SSF53649 249 641 2.06E-76 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_1981 916d78480df4f03fe9ab0746f9408115 645 PIRSF PIRSF005091 1 627 1.6E-195 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like BMD_1981 916d78480df4f03fe9ab0746f9408115 645 Pfam PF00884 Sulfatase 251 540 1.5E-40 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BMD_3279 1b07fa0a7aa0cfb8938a934859154773 257 Pfam PF10947 Protein of unknown function (DUF2628) 29 110 2.3E-15 T 13-10-2018 IPR024399 Protein of unknown function DUF2628 BMD_1510 ea1dbce9676d5672ddab50459f944592 264 Pfam PF00005 ABC transporter 19 167 2.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1510 ea1dbce9676d5672ddab50459f944592 264 SUPERFAMILY SSF52540 4 230 8.95E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1510 ea1dbce9676d5672ddab50459f944592 264 Gene3D G3DSA:3.40.50.300 2 258 4.9E-68 T 13-10-2018 BMD_1510 ea1dbce9676d5672ddab50459f944592 264 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1510 ea1dbce9676d5672ddab50459f944592 264 SMART SM00382 28 217 4.8E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2951 6f1c799fe50814d286ee31dc89b61482 310 SUPERFAMILY SSF53474 44 310 5.94E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2951 6f1c799fe50814d286ee31dc89b61482 310 Gene3D G3DSA:3.40.50.1820 55 308 6.4E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2951 6f1c799fe50814d286ee31dc89b61482 310 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 77 286 5.9E-13 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SUPERFAMILY SSF55785 256 361 1.41E-13 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SUPERFAMILY SSF47384 501 577 3.53E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Gene3D G3DSA:3.30.565.10 579 726 6.6E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Pfam PF08448 PAS fold 157 260 2.4E-8 T 13-10-2018 IPR013656 PAS fold-4 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SUPERFAMILY SSF55785 135 257 9.67E-19 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 150 266 6.9E-13 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 268 386 3.5E-6 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 388 506 3.9E-11 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 27 144 7.2E-10 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Pfam PF00512 His Kinase A (phospho-acceptor) domain 517 577 1.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SUPERFAMILY SSF55785 376 498 6.93E-17 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Gene3D G3DSA:3.30.450.20 377 498 5.2E-18 T 13-10-2018 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Gene3D G3DSA:3.30.450.20 16 136 5.0E-13 T 13-10-2018 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 624 725 3.1E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Gene3D G3DSA:3.30.450.20 270 376 1.5E-10 T 13-10-2018 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Gene3D G3DSA:1.10.287.130 500 578 9.1E-19 T 13-10-2018 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SUPERFAMILY SSF55874 572 725 2.62E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SMART SM00388 515 579 1.6E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SMART SM00387 621 726 9.8E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 PRINTS PR00344 Bacterial sensor protein C-terminal signature 688 706 1.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 PRINTS PR00344 Bacterial sensor protein C-terminal signature 677 687 1.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 PRINTS PR00344 Bacterial sensor protein C-terminal signature 659 673 1.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 PRINTS PR00344 Bacterial sensor protein C-terminal signature 712 725 1.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Pfam PF00989 PAS fold 392 460 1.8E-6 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Pfam PF00989 PAS fold 272 330 1.1E-6 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Gene3D G3DSA:3.30.450.20 146 269 1.5E-19 T 13-10-2018 BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SUPERFAMILY SSF55785 31 137 1.01E-11 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 Pfam PF13188 PAS domain 28 70 7.0E-4 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SMART SM00091 391 457 1.5E-9 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SMART SM00091 28 94 0.016 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SMART SM00091 150 216 8.3E-10 T 13-10-2018 IPR000014 PAS domain BMD_1227 b3f735c4e77df95d20bb6b750eefab4a 726 SMART SM00091 271 339 4.6E-6 T 13-10-2018 IPR000014 PAS domain BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 SUPERFAMILY SSF56024 42 223 6.28E-40 T 13-10-2018 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 SMART SM00155 310 337 5.8E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 SMART SM00155 138 165 3.7E-5 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 Gene3D G3DSA:3.30.870.10 226 367 2.2E-25 T 13-10-2018 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 Gene3D G3DSA:3.30.870.10 36 225 2.6E-38 T 13-10-2018 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 30 397 3.5E-103 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 Pfam PF13091 PLD-like domain 240 363 4.0E-26 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 Pfam PF13091 PLD-like domain 56 175 1.5E-12 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_5173 f75c5a8ab2f91dd9729e64b7f0c67fce 397 SUPERFAMILY SSF56024 190 381 2.47E-39 T 13-10-2018 BMD_3136 45e267f3bfaf32d30d5c83eaad49ca1e 395 SUPERFAMILY SSF53756 1 387 4.4E-71 T 13-10-2018 BMD_3136 45e267f3bfaf32d30d5c83eaad49ca1e 395 Gene3D G3DSA:3.40.50.2000 212 375 1.8E-102 T 13-10-2018 BMD_3136 45e267f3bfaf32d30d5c83eaad49ca1e 395 Gene3D G3DSA:3.40.50.2000 5 386 1.8E-102 T 13-10-2018 BMD_3136 45e267f3bfaf32d30d5c83eaad49ca1e 395 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 7 390 1.7E-94 T 13-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 BMD_3136 45e267f3bfaf32d30d5c83eaad49ca1e 395 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 227 367 1.8E-16 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 PIRSF PIRSF006092 1 158 7.2E-54 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 86 158 1.1E-27 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 Pfam PF03449 Transcription elongation factor, N-terminal 8 77 1.0E-31 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 SUPERFAMILY SSF46557 7 79 7.06E-27 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 Gene3D G3DSA:1.10.287.180 5 78 1.1E-31 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 SUPERFAMILY SSF54534 84 157 5.49E-22 T 13-10-2018 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 8 158 3.0E-58 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 5 158 32.752 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 Gene3D G3DSA:3.10.50.30 79 158 3.8E-27 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 BMD_4588 01acfa5532c90d2d963a335b1aa08eb7 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 20 51 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BMD_2252 e6db623bf7649b5f9e312ea2cd98f68a 286 SUPERFAMILY SSF55909 8 285 3.03E-76 T 13-10-2018 BMD_2252 e6db623bf7649b5f9e312ea2cd98f68a 286 Pfam PF02274 Amidinotransferase 27 285 1.3E-47 T 13-10-2018 BMD_2252 e6db623bf7649b5f9e312ea2cd98f68a 286 Gene3D G3DSA:3.75.10.10 8 286 1.1E-80 T 13-10-2018 BMD_2117 9f94a11863d308d7536cf3d442481d4b 142 Gene3D G3DSA:2.30.110.10 4 142 3.0E-36 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BMD_2117 9f94a11863d308d7536cf3d442481d4b 142 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 7 128 3.9E-16 T 13-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain BMD_2117 9f94a11863d308d7536cf3d442481d4b 142 SUPERFAMILY SSF50475 6 134 1.27E-28 T 13-10-2018 BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 TIGRFAM TIGR00238 TIGR00238: KamA family protein 13 342 1.9E-147 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 PIRSF PIRSF004911 2 399 1.1E-160 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 Gene3D G3DSA:3.20.20.70 63 348 4.5E-119 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 Pfam PF13353 4Fe-4S single cluster domain 127 198 5.8E-5 T 13-10-2018 BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 SUPERFAMILY SSF102114 114 357 2.22E-33 T 13-10-2018 BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 TIGRFAM TIGR03820 lys_2_3_AblA: lysine-2,3-aminomutase 21 427 7.7E-191 T 13-10-2018 IPR022459 Lysine-2,3-aminomutase KEGG: 00310+5.4.3.2 BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 Pfam PF12544 Lysine-2,3-aminomutase 321 447 1.2E-58 T 13-10-2018 IPR025895 Lysine-2,3-aminomutase, C-terminal domain BMD_2339 58dfa4c6913361a88f017b34e3757cfd 469 Gene3D G3DSA:2.40.50.600 349 413 1.2E-18 T 13-10-2018 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 Pfam PF00248 Aldo/keto reductase family 22 261 3.5E-56 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 PRINTS PR00069 Aldo-keto reductase signature 125 142 9.9E-53 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 PRINTS PR00069 Aldo-keto reductase signature 159 188 9.9E-53 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 PRINTS PR00069 Aldo-keto reductase signature 95 113 9.9E-53 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 PRINTS PR00069 Aldo-keto reductase signature 196 220 9.9E-53 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 PRINTS PR00069 Aldo-keto reductase signature 39 63 9.9E-53 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 PIRSF PIRSF000097 1 272 2.3E-94 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 SUPERFAMILY SSF51430 5 270 3.27E-99 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 Gene3D G3DSA:3.20.20.100 1 275 3.5E-126 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_0912 66b76d8bdaa29f37ae071286c7c4e73c 275 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 125 142 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 Gene3D G3DSA:3.30.70.330 406 481 1.5E-28 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 Gene3D G3DSA:3.40.50.300 211 383 3.9E-51 T 13-10-2018 BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 Pfam PF03880 DbpA RNA binding domain 407 477 1.8E-20 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 480 75.599 T 13-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 SMART SM00487 23 220 1.7E-58 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 Pfam PF00271 Helicase conserved C-terminal domain 231 337 8.6E-30 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 Pfam PF00270 DEAD/DEAH box helicase 28 194 7.5E-48 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 SUPERFAMILY SSF52540 71 358 4.17E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 SMART SM00490 256 337 2.6E-33 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0763 8ae09b83ddb8f6bcc4ebde6be4ae64f8 481 Gene3D G3DSA:3.40.50.300 1 209 1.5E-74 T 13-10-2018 BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 201 338 2.6E-38 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 SUPERFAMILY SSF52467 160 370 1.93E-45 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 SUPERFAMILY SSF52518 380 559 1.48E-53 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 Gene3D G3DSA:3.40.50.1220 201 368 4.5E-109 T 13-10-2018 BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 Gene3D G3DSA:3.40.50.970 2 181 8.1E-60 T 13-10-2018 BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 SUPERFAMILY SSF52518 5 180 2.2E-51 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 Gene3D G3DSA:3.40.50.970 369 555 4.5E-109 T 13-10-2018 BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 440 459 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 404 555 1.2E-38 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_0954 64d409a24adf70c3eb143004fa0f7682 585 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 175 1.9E-55 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_3319 bb38290d8a5416df937e61e324986807 462 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 256 286 - T 13-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 BMD_3319 bb38290d8a5416df937e61e324986807 462 Pfam PF12146 Serine aminopeptidase, S33 211 424 4.5E-10 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_3319 bb38290d8a5416df937e61e324986807 462 Pfam PF13026 Protein of unknown function (DUF3887) 48 135 4.8E-9 T 13-10-2018 IPR024981 Domain of unknown function DUF3887 KEGG: 00983+3.1.1.1|MetaCyc: PWY-6303|MetaCyc: PWY-6857 BMD_3319 bb38290d8a5416df937e61e324986807 462 Gene3D G3DSA:3.40.50.1820 170 447 4.7E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3319 bb38290d8a5416df937e61e324986807 462 SUPERFAMILY SSF53474 152 428 6.71E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 SUPERFAMILY SSF56014 263 351 9.49E-14 T 13-10-2018 BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 SUPERFAMILY SSF51717 18 214 4.71E-16 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 5 355 34.981 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 PIRSF PIRSF004640 1 361 4.1E-156 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 Gene3D G3DSA:3.30.413.10 260 360 7.1E-36 T 13-10-2018 BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 Pfam PF04551 GcpE protein 10 351 2.6E-140 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 Gene3D G3DSA:3.20.20.20 1 259 6.4E-110 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_4513 6dca0bf583ff7cdf6ea95c774dd6f96b 370 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 7 350 2.4E-131 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Gene3D G3DSA:3.30.190.20 132 241 5.3E-255 T 13-10-2018 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Gene3D G3DSA:1.20.1580.10 692 829 3.3E-147 T 13-10-2018 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Gene3D G3DSA:3.40.50.300 613 935 3.3E-147 T 13-10-2018 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 939 23.581 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Gene3D G3DSA:3.40.50.300 7 594 5.3E-255 T 13-10-2018 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Gene3D G3DSA:1.20.1580.10 92 492 5.3E-255 T 13-10-2018 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 924 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Pfam PF00005 ABC transporter 623 859 4.2E-10 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 Gene3D G3DSA:1.10.8.280 286 403 5.3E-255 T 13-10-2018 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 SUPERFAMILY SSF52540 615 920 6.07E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5068 01a9688e41d11f3376ef18e14f067500 958 ProSitePatterns PS00211 ABC transporters family signature. 829 843 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_5068 01a9688e41d11f3376ef18e14f067500 958 SUPERFAMILY SSF52540 10 569 1.51E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0742 a8aeaa79a069ba0c0f127f1213d90e84 245 Pfam PF01435 Peptidase family M48 57 133 3.4E-12 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BMD_0742 a8aeaa79a069ba0c0f127f1213d90e84 245 Pfam PF01435 Peptidase family M48 141 224 5.0E-6 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BMD_0742 a8aeaa79a069ba0c0f127f1213d90e84 245 Gene3D G3DSA:3.30.2010.10 44 135 2.7E-9 T 13-10-2018 BMD_5053 d25dc0aae0ce7ad5a2ac8a3b6f569b2c 252 SUPERFAMILY SSF51366 1 252 7.69E-82 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_5053 d25dc0aae0ce7ad5a2ac8a3b6f569b2c 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 252 5.9E-120 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 BMD_5053 d25dc0aae0ce7ad5a2ac8a3b6f569b2c 252 Gene3D G3DSA:3.20.20.70 1 252 1.8E-106 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_5053 d25dc0aae0ce7ad5a2ac8a3b6f569b2c 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 252 49.11 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 BMD_5053 d25dc0aae0ce7ad5a2ac8a3b6f569b2c 252 Pfam PF00977 Histidine biosynthesis protein 5 235 2.8E-89 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 BMD_2138 6daf98cb52c4a9007156b3f807e3e42a 296 Pfam PF02567 Phenazine biosynthesis-like protein 9 290 7.8E-76 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BMD_2138 6daf98cb52c4a9007156b3f807e3e42a 296 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 3 293 6.9E-94 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BMD_2138 6daf98cb52c4a9007156b3f807e3e42a 296 Gene3D G3DSA:3.10.310.10 123 284 1.2E-79 T 13-10-2018 BMD_2138 6daf98cb52c4a9007156b3f807e3e42a 296 PIRSF PIRSF016184 1 295 6.7E-81 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BMD_2138 6daf98cb52c4a9007156b3f807e3e42a 296 SUPERFAMILY SSF54506 6 292 1.73E-63 T 13-10-2018 BMD_2138 6daf98cb52c4a9007156b3f807e3e42a 296 Gene3D G3DSA:3.10.310.10 7 285 1.2E-79 T 13-10-2018 BMD_2456 3f923a398174eac68331be59682aea13 167 Gene3D G3DSA:3.60.21.10 1 160 2.2E-42 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_2456 3f923a398174eac68331be59682aea13 167 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 148 6.8E-29 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 BMD_2456 3f923a398174eac68331be59682aea13 167 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 149 1.8E-28 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 BMD_2456 3f923a398174eac68331be59682aea13 167 SUPERFAMILY SSF56300 1 164 8.81E-33 T 13-10-2018 BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 346 37.514 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 Pfam PF00072 Response regulator receiver domain 6 111 6.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 Gene3D G3DSA:3.40.50.2300 2 138 2.6E-31 T 13-10-2018 BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 SMART SM00448 4 118 3.0E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 SUPERFAMILY SSF52738 158 346 5.62E-58 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 SUPERFAMILY SSF52172 2 111 7.68E-29 T 13-10-2018 IPR011006 CheY-like superfamily BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 Pfam PF01339 CheB methylesterase 161 340 1.9E-52 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 PIRSF PIRSF000876 1 347 6.6E-126 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BMD_4158 185a223c78724c1d8734ced3a1141ce3 347 Gene3D G3DSA:3.40.50.180 154 344 2.6E-64 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal BMD_1855 ffb4d494828790e2106b470014b9b600 410 SUPERFAMILY SSF48264 20 409 5.37E-85 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 Pfam PF00067 Cytochrome P450 13 391 1.5E-57 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 138 154 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 356 367 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 280 291 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 297 324 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 347 356 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 92 103 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 198 220 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 325 340 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 PRINTS PR00359 B-class P450 signature 155 170 7.4E-48 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 Gene3D G3DSA:1.10.630.10 2 410 1.2E-106 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1855 ffb4d494828790e2106b470014b9b600 410 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 349 358 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 BMD_1766 e74acb264c3337c697fa019127147324 1039 SUPERFAMILY SSF82866 805 1024 1.01E-42 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:3.30.70.1430 553 658 2.5E-224 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:3.30.2090.10 180 272 2.5E-224 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:1.20.1640.10 12 497 2.5E-224 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 SUPERFAMILY SSF82693 42 132 5.75E-11 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:3.30.70.1320 135 325 2.5E-224 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:1.20.1640.10 498 1018 2.5E-224 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 Pfam PF00873 AcrB/AcrD/AcrF family 9 1021 1.9E-179 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 535 552 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 7.4E-36 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:3.30.2090.10 707 807 2.5E-224 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_1766 e74acb264c3337c697fa019127147324 1039 SUPERFAMILY SSF82693 136 320 2.25E-16 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 SUPERFAMILY SSF82714 187 263 2.35E-8 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:3.30.70.1430 42 815 2.5E-224 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 Gene3D G3DSA:3.30.70.1440 659 866 2.5E-224 T 13-10-2018 BMD_1766 e74acb264c3337c697fa019127147324 1039 SUPERFAMILY SSF82866 291 489 7.72E-36 T 13-10-2018 BMD_2131 dcea1e7608c26f4512caf7783d77e589 263 SMART SM00382 26 218 2.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2131 dcea1e7608c26f4512caf7783d77e589 263 Pfam PF00005 ABC transporter 17 167 1.1E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2131 dcea1e7608c26f4512caf7783d77e589 263 Gene3D G3DSA:3.40.50.300 1 256 3.4E-66 T 13-10-2018 BMD_2131 dcea1e7608c26f4512caf7783d77e589 263 SUPERFAMILY SSF52540 2 234 2.4E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2131 dcea1e7608c26f4512caf7783d77e589 263 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 24 248 5.7E-29 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 SUPERFAMILY SSF88946 6 100 2.2E-24 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 Pfam PF04542 Sigma-70 region 2 28 100 1.7E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 PIRSF PIRSF000770 4 253 1.1E-40 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 SUPERFAMILY SSF88659 171 250 4.3E-20 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 Pfam PF04545 Sigma-70, region 4 199 246 6.3E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 Pfam PF04539 Sigma-70 region 3 107 185 9.7E-9 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 PRINTS PR00046 Major sigma-70 factor signature 79 87 3.4E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 PRINTS PR00046 Major sigma-70 factor signature 234 245 3.4E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 PRINTS PR00046 Major sigma-70 factor signature 219 234 3.4E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 PRINTS PR00046 Major sigma-70 factor signature 55 68 3.4E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 PRINTS PR00046 Major sigma-70 factor signature 202 214 3.4E-9 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 28 249 4.2E-76 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 Gene3D G3DSA:1.10.1740.10 14 97 6.9E-25 T 13-10-2018 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 Gene3D G3DSA:1.20.140.160 99 252 2.0E-40 T 13-10-2018 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 219 245 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4154 90b3e415ea9c9faf8bc1c9b508ce5a29 253 SUPERFAMILY SSF88659 101 172 2.66E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Gene3D G3DSA:2.40.30.10 526 622 3.3E-34 T 13-10-2018 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 622 16.988 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Gene3D G3DSA:3.40.50.10050 418 525 1.4E-39 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily BMD_4138 af2d63a89b3397e91253d943d46d2469 623 SUPERFAMILY SSF52156 403 531 7.45E-39 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily BMD_4138 af2d63a89b3397e91253d943d46d2469 623 SUPERFAMILY SSF50447 526 621 3.33E-33 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Pfam PF00009 Elongation factor Tu GTP binding domain 129 284 8.5E-35 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 40 620 3.1E-278 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 127 283 6.2E-37 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 SUPERFAMILY SSF52540 117 297 6.8E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 50 98 7.2E-17 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal BMD_4138 af2d63a89b3397e91253d943d46d2469 623 SUPERFAMILY SSF50447 296 379 3.77E-26 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Gene3D G3DSA:3.40.50.300 121 295 5.2E-74 T 13-10-2018 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 ProSitePatterns PS01176 Initiation factor 2 signature. 575 597 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Pfam PF11987 Translation-initiation factor 2 410 514 2.1E-37 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 BMD_4138 af2d63a89b3397e91253d943d46d2469 623 Gene3D G3DSA:2.40.30.10 296 413 1.0E-41 T 13-10-2018 BMD_4264 d9cbfa6adf03958158e86064ea32f92f 341 TIGRFAM TIGR02615 spoVE: stage V sporulation protein E 1 337 1.1E-174 T 13-10-2018 IPR013438 Sporulation stage V, protein E BMD_4264 d9cbfa6adf03958158e86064ea32f92f 341 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 297 321 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_4264 d9cbfa6adf03958158e86064ea32f92f 341 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 1 338 5.4E-128 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_4264 d9cbfa6adf03958158e86064ea32f92f 341 Pfam PF01098 Cell cycle protein 1 340 1.3E-126 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_2846 8f38df0e9412f98add030ceffb404b06 411 SUPERFAMILY SSF103473 5 391 3.01E-29 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2846 8f38df0e9412f98add030ceffb404b06 411 Gene3D G3DSA:1.20.1250.20 2 390 2.4E-22 T 13-10-2018 BMD_2846 8f38df0e9412f98add030ceffb404b06 411 Pfam PF07690 Major Facilitator Superfamily 16 315 6.8E-9 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1414 31b0aecc664a3df6bff6a4034250af7e 110 PIRSF PIRSF029938 1 110 5.3E-44 T 13-10-2018 IPR011229 Cell cycle protein GpsB BMD_1414 31b0aecc664a3df6bff6a4034250af7e 110 Pfam PF05103 DivIVA protein 8 68 2.4E-17 T 13-10-2018 IPR007793 DivIVA family BMD_1414 31b0aecc664a3df6bff6a4034250af7e 110 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 8 41 1.2E-15 T 13-10-2018 IPR019933 DivIVA domain BMD_1414 31b0aecc664a3df6bff6a4034250af7e 110 Hamap MF_02011 Cell cycle protein GpsB [gpsB]. 3 106 24.267 T 13-10-2018 IPR011229 Cell cycle protein GpsB BMD_4061 2a0313d5737d36d0f508e4ba8b80e77d 474 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 21 468 5.6E-203 T 13-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 BMD_4061 2a0313d5737d36d0f508e4ba8b80e77d 474 PIRSF PIRSF036492 23 471 1.9E-83 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 BMD_4061 2a0313d5737d36d0f508e4ba8b80e77d 474 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_4061 2a0313d5737d36d0f508e4ba8b80e77d 474 SUPERFAMILY SSF53720 3 472 4.06E-175 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_4061 2a0313d5737d36d0f508e4ba8b80e77d 474 Pfam PF00171 Aldehyde dehydrogenase family 14 469 8.9E-178 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_4061 2a0313d5737d36d0f508e4ba8b80e77d 474 Gene3D G3DSA:3.40.309.10 252 442 4.0E-185 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_4061 2a0313d5737d36d0f508e4ba8b80e77d 474 Gene3D G3DSA:3.40.605.10 13 465 4.0E-185 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_0411 52806837d5c6063871558136455f07af 432 Gene3D G3DSA:3.40.640.10 72 320 1.5E-168 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0411 52806837d5c6063871558136455f07af 432 Gene3D G3DSA:3.90.1150.10 9 423 1.5E-168 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0411 52806837d5c6063871558136455f07af 432 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 273 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0411 52806837d5c6063871558136455f07af 432 SUPERFAMILY SSF53383 2 428 2.62E-123 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0411 52806837d5c6063871558136455f07af 432 Pfam PF00202 Aminotransferase class-III 36 405 9.4E-71 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0411 52806837d5c6063871558136455f07af 432 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 428 93.715 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BMD_0411 52806837d5c6063871558136455f07af 432 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 5 427 2.2E-170 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BMD_1589 6bb231f5daacc3d7aa6bf75a3b60b2e7 449 Pfam PF00296 Luciferase-like monooxygenase 19 383 1.2E-57 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_1589 6bb231f5daacc3d7aa6bf75a3b60b2e7 449 SUPERFAMILY SSF51679 4 436 1.03E-126 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_1589 6bb231f5daacc3d7aa6bf75a3b60b2e7 449 PIRSF PIRSF000337 3 444 6.1E-154 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_1589 6bb231f5daacc3d7aa6bf75a3b60b2e7 449 Gene3D G3DSA:3.20.20.30 1 447 6.0E-158 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_1589 6bb231f5daacc3d7aa6bf75a3b60b2e7 449 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 430 6.8E-169 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PIRSF PIRSF037149 1 778 6.3E-263 T 13-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 281 1.1E-57 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 SUPERFAMILY SSF51905 147 306 6.94E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 555 615 4.1E-11 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 774 2.9E-257 T 13-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Pfam PF04324 BFD-like [2Fe-2S] binding domain 414 462 1.0E-13 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 233 247 2.9E-11 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 279 2.9E-11 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.9E-11 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 2.9E-11 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Gene3D G3DSA:3.50.50.60 115 239 3.4E-87 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Gene3D G3DSA:1.10.10.1100 414 467 1.6E-8 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Gene3D G3DSA:3.50.50.60 7 291 3.4E-87 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 SUPERFAMILY SSF51905 2 192 7.78E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Gene3D G3DSA:3.90.480.10 536 620 1.4E-5 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 644 756 1.5E-11 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 4.2E-20 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 4.2E-20 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 4.2E-20 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 4.2E-20 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 257 279 4.2E-20 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 SUPERFAMILY SSF55124 510 615 2.45E-16 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Gene3D G3DSA:3.30.413.10 624 777 1.3E-17 T 13-10-2018 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 Gene3D G3DSA:3.30.390.30 316 396 4.2E-12 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_0778 e1cede9869abc129ed8cee1cb92fe42b 781 SUPERFAMILY SSF56014 634 758 8.77E-20 T 13-10-2018 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 SUPERFAMILY SSF54980 304 389 1.26E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 SMART SM00838 397 482 1.6E-4 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 SUPERFAMILY SSF54980 400 515 8.15E-29 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Pfam PF03144 Elongation factor Tu domain 2 221 291 2.5E-13 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 SUPERFAMILY SSF50447 154 301 4.99E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 PRINTS PR00315 GTP-binding elongation factor signature 89 100 3.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 PRINTS PR00315 GTP-binding elongation factor signature 9 22 3.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 PRINTS PR00315 GTP-binding elongation factor signature 53 61 3.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 PRINTS PR00315 GTP-binding elongation factor signature 125 134 3.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 PRINTS PR00315 GTP-binding elongation factor signature 73 83 3.2E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Gene3D G3DSA:3.40.50.300 4 200 1.7E-67 T 13-10-2018 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Gene3D G3DSA:2.40.50.250 485 601 1.4E-129 T 13-10-2018 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Pfam PF00679 Elongation factor G C-terminus 399 479 6.1E-24 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Pfam PF14492 Elongation Factor G, domain II 330 383 7.4E-7 T 13-10-2018 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Gene3D G3DSA:3.30.70.240 391 484 1.4E-129 T 13-10-2018 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Gene3D G3DSA:3.30.70.870 308 592 1.4E-129 T 13-10-2018 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Gene3D G3DSA:2.40.30.10 201 301 1.1E-33 T 13-10-2018 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 601 6.6E-292 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 SUPERFAMILY SSF52540 3 209 1.92E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 Pfam PF00009 Elongation factor Tu GTP binding domain 6 197 3.6E-56 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_1340 96b334ee790cb80e1983505e2d0fc45e 612 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 148 9.2E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_4022 afb1208b9811c5c719c677ad4484b73d 345 Pfam PF01757 Acyltransferase family 5 308 1.9E-19 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Gene3D G3DSA:2.40.50.140 40 161 4.0E-72 T 13-10-2018 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SUPERFAMILY SSF46955 411 483 2.29E-20 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SUPERFAMILY SSF55681 475 697 4.97E-48 T 13-10-2018 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Gene3D G3DSA:3.30.70.380 711 804 3.4E-32 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 803 1.6E-275 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Pfam PF03484 tRNA synthetase B5 domain 414 479 1.6E-20 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Gene3D G3DSA:3.50.40.10 204 405 1.5E-84 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SUPERFAMILY SSF56037 209 406 2.22E-74 T 13-10-2018 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Pfam PF01588 Putative tRNA binding domain 46 152 3.6E-28 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SMART SM00873 221 394 1.6E-93 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SUPERFAMILY SSF50249 36 199 2.69E-48 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Pfam PF03147 Ferredoxin-fold anticodon binding domain 710 803 4.7E-29 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SMART SM00874 411 479 2.0E-27 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SMART SM00896 710 803 6.4E-47 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Gene3D G3DSA:3.30.56.10 411 483 8.9E-26 T 13-10-2018 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Pfam PF03483 B3/4 domain 222 393 1.4E-69 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Gene3D G3DSA:3.30.930.10 495 698 1.3E-60 T 13-10-2018 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 797 46.518 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 SUPERFAMILY SSF54991 705 803 2.09E-32 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 BMD_4728 d9ffa4c692b31aea0e435d76d81cda5d 804 Gene3D G3DSA:3.30.56.10 4 189 4.0E-72 T 13-10-2018 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Pfam PF01645 Conserved region in glutamate synthase 798 1165 3.8E-159 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 SUPERFAMILY SSF69336 1213 1479 2.35E-90 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 SUPERFAMILY SSF51395 457 1202 5.29E-256 T 13-10-2018 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Pfam PF00310 Glutamine amidotransferases class-II 22 438 1.3E-188 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Gene3D G3DSA:3.20.20.70 443 797 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Gene3D G3DSA:2.160.20.60 1215 1488 2.8E-108 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Gene3D G3DSA:3.60.20.10 22 551 0.0 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Gene3D G3DSA:3.20.20.70 489 1182 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Pfam PF04898 Glutamate synthase central domain 463 740 4.6E-115 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 SUPERFAMILY SSF56235 22 441 1.47E-155 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_2055 667f2ad052fbbed95517fcf9a9c5a961 1517 Pfam PF01493 GXGXG motif 1244 1432 2.2E-80 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 SUPERFAMILY SSF48452 160 323 1.0E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 Gene3D G3DSA:1.25.40.10 156 324 3.8E-20 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 Pfam PF14559 Tetratricopeptide repeat 165 229 1.9E-8 T 13-10-2018 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 Pfam PF13432 Tetratricopeptide repeat 27 76 0.0036 T 13-10-2018 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 SUPERFAMILY SSF48452 22 220 6.83E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 Gene3D G3DSA:1.25.40.10 4 137 1.8E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 SMART SM00028 189 222 2.0E-6 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 SMART SM00028 21 54 62.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 SMART SM00028 90 123 69.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_5051 19147514a2d821e4efbdf77dfcf46e6c 500 SMART SM00028 55 88 66.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2599 ef2e2e191c0e20c72bd7c2751255be95 256 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 252 1.4E-115 T 13-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 BMD_2599 ef2e2e191c0e20c72bd7c2751255be95 256 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 2 208 2.2E-46 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_2599 ef2e2e191c0e20c72bd7c2751255be95 256 SUPERFAMILY SSF53790 2 242 1.44E-67 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_2599 ef2e2e191c0e20c72bd7c2751255be95 256 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_2599 ef2e2e191c0e20c72bd7c2751255be95 256 Gene3D G3DSA:3.40.1010.10 1 110 8.6E-37 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_2599 ef2e2e191c0e20c72bd7c2751255be95 256 Gene3D G3DSA:3.30.950.10 111 231 1.7E-50 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BMD_4443 4924a3cb23ce918eb15d66c82c0da8ab 77 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 8 63 3.6E-24 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BMD_4443 4924a3cb23ce918eb15d66c82c0da8ab 77 PIRSF PIRSF006488 1 77 5.1E-20 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BMD_4443 4924a3cb23ce918eb15d66c82c0da8ab 77 Pfam PF02609 Exonuclease VII small subunit 9 59 1.2E-22 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BMD_4443 4924a3cb23ce918eb15d66c82c0da8ab 77 Gene3D G3DSA:1.10.287.1040 2 77 1.8E-23 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 BMD_4443 4924a3cb23ce918eb15d66c82c0da8ab 77 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 49 5.0E-12 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BMD_4443 4924a3cb23ce918eb15d66c82c0da8ab 77 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 68 14.925 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BMD_4443 4924a3cb23ce918eb15d66c82c0da8ab 77 SUPERFAMILY SSF116842 3 68 8.5E-22 T 13-10-2018 BMD_2544 9d1a5d973852e1590336ed9b50b5c586 47 Pfam PF13040 Fur-regulated basic protein B 2 39 4.2E-15 T 13-10-2018 IPR025004 Transcriptional regulatory protein SenN/SenS BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 TIGRFAM TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 3 279 1.1E-117 T 13-10-2018 IPR019991 GTP-binding protein, ribosome biogenesis BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 PIRSF PIRSF006230 1 284 1.3E-104 T 13-10-2018 IPR016478 GTPase, MTG1 BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 SUPERFAMILY SSF52540 9 194 2.09E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 124 144 6.9E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 170 185 6.9E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 Gene3D G3DSA:1.10.1580.10 181 273 2.3E-31 T 13-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 Gene3D G3DSA:3.40.50.300 12 180 9.0E-50 T 13-10-2018 BMD_4194 1af72cd56c24b8238dd3bf7462758162 288 Pfam PF01926 50S ribosome-binding GTPase 124 214 9.5E-18 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_1664 23d2c2e0e96fdb7c2b12cc942e97834a 740 Pfam PF03176 MMPL family 502 729 1.5E-45 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 BMD_1664 23d2c2e0e96fdb7c2b12cc942e97834a 740 Pfam PF03176 MMPL family 53 406 8.1E-60 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 BMD_1664 23d2c2e0e96fdb7c2b12cc942e97834a 740 SUPERFAMILY SSF82866 519 729 1.44E-27 T 13-10-2018 BMD_1664 23d2c2e0e96fdb7c2b12cc942e97834a 740 SUPERFAMILY SSF82866 179 360 3.53E-29 T 13-10-2018 BMD_1664 23d2c2e0e96fdb7c2b12cc942e97834a 740 Gene3D G3DSA:1.20.1640.10 179 376 4.3E-6 T 13-10-2018 BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 3.6E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 Pfam PF00381 PTS HPr component phosphorylation site 5 81 4.0E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 SUPERFAMILY SSF55594 1 81 6.41E-20 T 13-10-2018 IPR035895 HPr-like superfamily BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 Gene3D G3DSA:3.30.1340.10 1 81 1.9E-25 T 13-10-2018 IPR035895 HPr-like superfamily BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 PRINTS PR00107 Phosphocarrier protein signature 53 70 4.7E-15 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 PRINTS PR00107 Phosphocarrier protein signature 38 53 4.7E-15 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_3472 2383060dd6ae37b355ca52a011cc6863 86 PRINTS PR00107 Phosphocarrier protein signature 13 29 4.7E-15 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_0402 cf49a55247f5c084d92621cdad48662a 318 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 4 172 5.3E-25 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase BMD_1830 25bd1f1bf47a4f55c9f19a169783f167 868 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 317 5.1E-91 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 BMD_1830 25bd1f1bf47a4f55c9f19a169783f167 868 Gene3D G3DSA:3.30.470.20 185 314 2.7E-43 T 13-10-2018 BMD_1830 25bd1f1bf47a4f55c9f19a169783f167 868 SUPERFAMILY SSF52009 758 866 1.31E-27 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BMD_1830 25bd1f1bf47a4f55c9f19a169783f167 868 Gene3D G3DSA:3.30.1490.20 1 184 1.8E-69 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_1830 25bd1f1bf47a4f55c9f19a169783f167 868 Pfam PF00391 PEP-utilising enzyme, mobile domain 792 863 6.5E-22 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BMD_1830 25bd1f1bf47a4f55c9f19a169783f167 868 Gene3D G3DSA:3.50.30.10 765 868 9.5E-31 T 13-10-2018 BMD_1830 25bd1f1bf47a4f55c9f19a169783f167 868 SUPERFAMILY SSF56059 1 341 1.53E-94 T 13-10-2018 BMD_0491 f8a285eb7cc7ecc1597a966451ec6ad8 340 SUPERFAMILY SSF51735 4 150 9.26E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0491 f8a285eb7cc7ecc1597a966451ec6ad8 340 SUPERFAMILY SSF55347 128 291 8.5E-34 T 13-10-2018 BMD_0491 f8a285eb7cc7ecc1597a966451ec6ad8 340 Gene3D G3DSA:3.30.360.10 142 272 6.1E-107 T 13-10-2018 BMD_0491 f8a285eb7cc7ecc1597a966451ec6ad8 340 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 4 331 6.9E-140 T 13-10-2018 IPR030827 Inositol 2-dehydrogenase BMD_0491 f8a285eb7cc7ecc1597a966451ec6ad8 340 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 139 231 3.3E-7 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BMD_0491 f8a285eb7cc7ecc1597a966451ec6ad8 340 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 123 5.3E-27 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_0491 f8a285eb7cc7ecc1597a966451ec6ad8 340 Gene3D G3DSA:3.40.50.720 6 321 6.1E-107 T 13-10-2018 BMD_0483 2f4cf099f253afc7464222b865474b69 276 Gene3D G3DSA:3.40.630.30 147 276 1.3E-19 T 13-10-2018 BMD_0483 2f4cf099f253afc7464222b865474b69 276 SUPERFAMILY SSF55729 28 116 1.8E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0483 2f4cf099f253afc7464222b865474b69 276 Gene3D G3DSA:3.40.630.30 3 126 7.7E-12 T 13-10-2018 BMD_0483 2f4cf099f253afc7464222b865474b69 276 Pfam PF00583 Acetyltransferase (GNAT) family 179 263 4.8E-12 T 13-10-2018 IPR000182 GNAT domain BMD_0483 2f4cf099f253afc7464222b865474b69 276 Pfam PF00583 Acetyltransferase (GNAT) family 24 103 5.6E-7 T 13-10-2018 IPR000182 GNAT domain BMD_0483 2f4cf099f253afc7464222b865474b69 276 SUPERFAMILY SSF55729 149 272 4.22E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 ProSitePatterns PS00679 Beta-amylase active site 2. 198 208 - T 13-10-2018 IPR018238 Glycoside hydrolase, family 14, conserved site GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 Gene3D G3DSA:3.20.20.80 31 446 1.0E-157 T 13-10-2018 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 SMART SM01065 449 545 1.4E-11 T 13-10-2018 IPR002044 Carbohydrate binding module family 20 GO:2001070 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 Pfam PF00686 Starch binding domain 456 541 1.2E-16 T 13-10-2018 IPR002044 Carbohydrate binding module family 20 GO:2001070 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 SUPERFAMILY SSF51445 37 501 1.52E-139 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 Gene3D G3DSA:2.60.40.10 447 545 2.7E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 Pfam PF01373 Glycosyl hydrolase family 14 44 439 1.7E-197 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00841 Bacterial beta-amylase signature 251 268 8.7E-25 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00841 Bacterial beta-amylase signature 138 157 8.7E-25 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00841 Bacterial beta-amylase signature 235 250 8.7E-25 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00841 Bacterial beta-amylase signature 416 437 8.7E-25 T 13-10-2018 IPR000125 Glycoside hydrolase, family 14A, bacterial GO:0005976|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 ProSitePatterns PS00506 Beta-amylase active site 1. 119 127 - T 13-10-2018 IPR018238 Glycoside hydrolase, family 14, conserved site GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 275 294 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 93 111 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 198 220 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 312 328 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 115 136 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 331 342 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 72 86 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 343 366 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_0357 daa434f93828734df0d3c6681f66a4f9 545 PRINTS PR00750 Beta-amylase (glycosyl hydrolase family 14) signature 379 401 7.5E-56 T 13-10-2018 IPR001554 Glycoside hydrolase, family 14 GO:0000272|GO:0016161 KEGG: 00500+3.2.1.2|MetaCyc: PWY-6724|MetaCyc: PWY-842 BMD_1509 d126cc174f66656c186d2c0a7f16a3ff 307 Pfam PF01497 Periplasmic binding protein 69 281 9.0E-32 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain BMD_1509 d126cc174f66656c186d2c0a7f16a3ff 307 Gene3D G3DSA:3.40.50.1980 50 138 2.9E-26 T 13-10-2018 BMD_1509 d126cc174f66656c186d2c0a7f16a3ff 307 SUPERFAMILY SSF53807 36 298 7.46E-51 T 13-10-2018 BMD_1509 d126cc174f66656c186d2c0a7f16a3ff 307 Gene3D G3DSA:3.40.50.1980 139 307 4.1E-59 T 13-10-2018 BMD_3324 d2cb66ffd6660a6d8c882b27b73bb70a 270 Gene3D G3DSA:3.40.50.300 17 258 3.7E-66 T 13-10-2018 BMD_3324 d2cb66ffd6660a6d8c882b27b73bb70a 270 Pfam PF00005 ABC transporter 39 178 1.1E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3324 d2cb66ffd6660a6d8c882b27b73bb70a 270 SMART SM00382 48 229 7.5E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3324 d2cb66ffd6660a6d8c882b27b73bb70a 270 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_3324 d2cb66ffd6660a6d8c882b27b73bb70a 270 SUPERFAMILY SSF52540 20 234 3.17E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1135 256cc9dd1608b1b9ee40ceb77e20307b 479 Gene3D G3DSA:3.40.980.20 297 478 3.6E-11 T 13-10-2018 BMD_1135 256cc9dd1608b1b9ee40ceb77e20307b 479 Gene3D G3DSA:3.40.50.10840 48 283 3.4E-10 T 13-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily BMD_1135 256cc9dd1608b1b9ee40ceb77e20307b 479 Pfam PF07005 Putative sugar-binding N-terminal domain 40 281 1.6E-52 T 13-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain BMD_1135 256cc9dd1608b1b9ee40ceb77e20307b 479 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 306 470 1.5E-37 T 13-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain BMD_1135 256cc9dd1608b1b9ee40ceb77e20307b 479 SUPERFAMILY SSF142764 40 477 5.49E-66 T 13-10-2018 BMD_0926 f356efc6f9867a4e0ee0aed258d3e3d5 306 SUPERFAMILY SSF53822 30 305 3.61E-89 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_0926 f356efc6f9867a4e0ee0aed258d3e3d5 306 Pfam PF13407 Periplasmic binding protein domain 40 290 2.7E-64 T 13-10-2018 IPR025997 Periplasmic binding protein BMD_0926 f356efc6f9867a4e0ee0aed258d3e3d5 306 Gene3D G3DSA:3.40.50.2300 138 271 1.2E-90 T 13-10-2018 BMD_0926 f356efc6f9867a4e0ee0aed258d3e3d5 306 Gene3D G3DSA:3.40.50.2300 44 290 1.2E-90 T 13-10-2018 BMD_0271 f453c4b0a258e0e7b30d72fd0644a361 162 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 33.874 T 13-10-2018 IPR033747 Class I PurE BMD_0271 f453c4b0a258e0e7b30d72fd0644a361 162 SMART SM01001 3 154 9.3E-106 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BMD_0271 f453c4b0a258e0e7b30d72fd0644a361 162 Pfam PF00731 AIR carboxylase 4 150 1.2E-67 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BMD_0271 f453c4b0a258e0e7b30d72fd0644a361 162 PIRSF PIRSF001338 1 162 4.2E-71 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 BMD_0271 f453c4b0a258e0e7b30d72fd0644a361 162 Gene3D G3DSA:3.40.50.7700 1 162 6.8E-76 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BMD_0271 f453c4b0a258e0e7b30d72fd0644a361 162 SUPERFAMILY SSF52255 4 160 3.14E-69 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BMD_0271 f453c4b0a258e0e7b30d72fd0644a361 162 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 161 1.2E-68 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BMD_4004 d65e7d4adc4f66537d8f41254324f700 165 Gene3D G3DSA:2.70.70.10 6 164 1.6E-62 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_4004 d65e7d4adc4f66537d8f41254324f700 165 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 17 137 7.4E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_4004 d65e7d4adc4f66537d8f41254324f700 165 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 79 91 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_4004 d65e7d4adc4f66537d8f41254324f700 165 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 16 139 6.2E-54 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_4004 d65e7d4adc4f66537d8f41254324f700 165 SUPERFAMILY SSF51261 5 158 2.27E-57 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 SUPERFAMILY SSF46977 409 506 3.27E-20 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 1.2E-7 T 13-10-2018 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 343 1.2E-7 T 13-10-2018 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 321 343 1.2E-15 T 13-10-2018 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 1.2E-15 T 13-10-2018 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 1.2E-15 T 13-10-2018 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 PIRSF PIRSF000171 270 514 6.1E-11 T 13-10-2018 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 PIRSF PIRSF000171 3 222 6.2E-22 T 13-10-2018 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 SUPERFAMILY SSF51905 5 381 1.76E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 Gene3D G3DSA:3.50.50.60 2 250 2.5E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 Pfam PF00890 FAD binding domain 10 215 5.4E-21 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 Pfam PF02910 Fumarate reductase flavoprotein C-term 429 505 2.4E-10 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_3321 16bdcf2839627dcc42ed7ca5ca121a43 532 Gene3D G3DSA:1.20.58.100 388 497 1.7E-15 T 13-10-2018 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 7 393 4.1E-139 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 SUPERFAMILY SSF103473 8 401 5.62E-42 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 Gene3D G3DSA:1.20.1250.20 197 395 2.4E-63 T 13-10-2018 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 Pfam PF01306 LacY proton/sugar symporter 5 401 2.5E-139 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 67 96 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 102 124 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 144 162 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 253 274 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 339 359 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 277 303 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 308 327 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 PRINTS PR00174 LacY proton/sugar symporter family signature 207 235 6.3E-89 T 13-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BMD_1565 a14085232e0479903f9da7fefbbe37ba 413 Gene3D G3DSA:1.20.1250.20 4 196 9.6E-42 T 13-10-2018 BMD_0059 3e7cccc34311447522e116670cf86a0d 290 TIGRFAM TIGR02855 spore_yabG: sporulation peptidase YabG 4 286 8.3E-135 T 13-10-2018 IPR008764 Peptidase U57, YabG BMD_0059 3e7cccc34311447522e116670cf86a0d 290 ProDom PD127708 YABG PROTEASE SPORULATION-SPECIFIC PEPTIDASE U57 BH0058 ORTHOLOG SPORE FAMILY B.SUBTILIS 3 280 2.0E-102 T 13-10-2018 IPR008764 Peptidase U57, YabG BMD_0059 3e7cccc34311447522e116670cf86a0d 290 Pfam PF05582 YabG peptidase U57 4 285 1.3E-112 T 13-10-2018 IPR008764 Peptidase U57, YabG BMD_0059 3e7cccc34311447522e116670cf86a0d 290 PIRSF PIRSF011575 2 290 2.2E-118 T 13-10-2018 IPR008764 Peptidase U57, YabG BMD_1691 3f91a8a5f11fc6bed437763554e0cb0b 59 Hamap MF_00667 Small, acid-soluble spore protein H [sspH]. 1 59 17.269 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_1691 3f91a8a5f11fc6bed437763554e0cb0b 59 TIGRFAM TIGR02861 SASP_H: small acid-soluble spore protein, H-type 1 58 9.3E-19 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_1691 3f91a8a5f11fc6bed437763554e0cb0b 59 Pfam PF08141 Small acid-soluble spore protein H family 1 58 9.8E-22 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_1691 3f91a8a5f11fc6bed437763554e0cb0b 59 ProDom PD052450 H SPORE ACID-SOLUBLE SMALL SASP SPORULATION SMALL PROTEIN-RELATED SOLUBLE RBL04815 1 58 1.0E-7 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_1841 78cb525140aa028c3ef51518560f77d0 322 Pfam PF10503 Esterase PHB depolymerase 41 237 6.9E-56 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 BMD_1841 78cb525140aa028c3ef51518560f77d0 322 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 42 243 1.3E-43 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 BMD_1841 78cb525140aa028c3ef51518560f77d0 322 Gene3D G3DSA:3.40.50.1820 36 321 1.7E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1841 78cb525140aa028c3ef51518560f77d0 322 SUPERFAMILY SSF53474 38 274 1.05E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2080 014c3d5273b6a5fcb6d76baa39ce52e5 288 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 24 283 5.3E-94 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BMD_2080 014c3d5273b6a5fcb6d76baa39ce52e5 288 SUPERFAMILY SSF161098 26 279 1.11E-52 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2080 014c3d5273b6a5fcb6d76baa39ce52e5 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 286 1.9E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2080 014c3d5273b6a5fcb6d76baa39ce52e5 288 Gene3D G3DSA:1.10.3720.10 28 286 1.2E-60 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2080 014c3d5273b6a5fcb6d76baa39ce52e5 288 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 27 286 2.8E-123 T 13-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 BMD_4419 2d389b11fee79ddd18071e404cc5e6e7 145 Pfam PF06491 Disulphide isomerase 8 142 6.0E-62 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family BMD_4419 2d389b11fee79ddd18071e404cc5e6e7 145 TIGRFAM TIGR04191 YphP_YqiW: putative bacilliredoxin, YphP/YqiW family 8 142 5.4E-63 T 13-10-2018 IPR009474 Putative bacilliredoxin, YphP/YqiW family BMD_4419 2d389b11fee79ddd18071e404cc5e6e7 145 Gene3D G3DSA:3.40.30.10 25 142 8.6E-54 T 13-10-2018 BMD_1706 fd60a052a28024154445c0ace8e569d6 273 Gene3D G3DSA:3.40.50.300 1 272 1.2E-68 T 13-10-2018 BMD_1706 fd60a052a28024154445c0ace8e569d6 273 TIGRFAM TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE 2 266 3.0E-107 T 13-10-2018 IPR014137 Nickel import ATP-binding protein NikE GO:0005886|GO:0015413|GO:0015675|GO:0016151 BMD_1706 fd60a052a28024154445c0ace8e569d6 273 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1706 fd60a052a28024154445c0ace8e569d6 273 SUPERFAMILY SSF52540 4 250 2.28E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1706 fd60a052a28024154445c0ace8e569d6 273 Pfam PF00005 ABC transporter 29 179 2.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1706 fd60a052a28024154445c0ace8e569d6 273 SMART SM00382 38 230 4.7E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2888 158bed479b7e5e75809672bc9ca9d43d 264 Pfam PF09339 IclR helix-turn-helix domain 9 59 2.3E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BMD_2888 158bed479b7e5e75809672bc9ca9d43d 264 Pfam PF01614 Bacterial transcriptional regulator 124 248 9.0E-42 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal BMD_2888 158bed479b7e5e75809672bc9ca9d43d 264 Gene3D G3DSA:3.30.450.40 79 261 9.1E-66 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_2888 158bed479b7e5e75809672bc9ca9d43d 264 Gene3D G3DSA:1.10.10.10 5 78 1.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2888 158bed479b7e5e75809672bc9ca9d43d 264 SUPERFAMILY SSF46785 7 80 4.94E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2888 158bed479b7e5e75809672bc9ca9d43d 264 SUPERFAMILY SSF55781 65 253 2.22E-55 T 13-10-2018 BMD_2888 158bed479b7e5e75809672bc9ca9d43d 264 SMART SM00346 7 97 4.9E-27 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BMD_0026 61db6713ab0306838890b0b18518733c 198 Gene3D G3DSA:3.40.1360.10 77 198 5.2E-50 T 13-10-2018 BMD_0026 61db6713ab0306838890b0b18518733c 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 110.786 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BMD_0026 61db6713ab0306838890b0b18518733c 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 196 7.0E-91 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BMD_0026 61db6713ab0306838890b0b18518733c 198 SMART SM00493 80 165 6.5E-18 T 13-10-2018 IPR006171 TOPRIM domain BMD_0026 61db6713ab0306838890b0b18518733c 198 Pfam PF13662 Toprim domain 81 171 1.8E-26 T 13-10-2018 IPR006171 TOPRIM domain BMD_0026 61db6713ab0306838890b0b18518733c 198 Gene3D G3DSA:1.10.8.420 1 53 1.1E-19 T 13-10-2018 BMD_0026 61db6713ab0306838890b0b18518733c 198 SUPERFAMILY SSF111304 2 198 4.84E-79 T 13-10-2018 IPR023627 Recombination protein RecR BMD_0026 61db6713ab0306838890b0b18518733c 198 Pfam PF02132 RecR protein 40 77 5.3E-17 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Pfam PF14716 Helix-hairpin-helix domain 4 69 2.2E-20 T 13-10-2018 IPR010996 DNA polymerase beta-like, N-terminal domain BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Gene3D G3DSA:1.10.150.20 83 147 1.9E-19 T 13-10-2018 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Pfam PF14791 DNA polymerase beta thumb 253 314 4.4E-19 T 13-10-2018 IPR029398 DNA polymerase beta, thumb domain BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Pfam PF02811 PHP domain 337 450 2.2E-8 T 13-10-2018 IPR004013 PHP domain GO:0003824 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Pfam PF14520 Helix-hairpin-helix domain 90 144 3.1E-6 T 13-10-2018 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SMART SM00278 88 107 19.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SMART SM00278 48 67 5.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SMART SM00278 123 142 13.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Gene3D G3DSA:3.20.20.140 324 570 2.0E-75 T 13-10-2018 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Gene3D G3DSA:3.30.210.10 259 323 9.0E-18 T 13-10-2018 IPR037160 DNA polymerase, thumb domain superfamily BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SMART SM00483 1 314 1.7E-69 T 13-10-2018 IPR002054 DNA-directed DNA polymerase X GO:0003677|GO:0003887 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SMART SM00481 336 415 2.8E-22 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Gene3D G3DSA:3.30.460.10 152 258 1.4E-24 T 13-10-2018 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SUPERFAMILY SSF89550 335 568 1.96E-54 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 Gene3D G3DSA:1.10.150.110 1 82 2.5E-20 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SUPERFAMILY SSF81301 152 314 7.19E-45 T 13-10-2018 BMD_4724 f063829a838b0b12e4fdb363603e1276 570 SUPERFAMILY SSF47802 2 81 8.11E-21 T 13-10-2018 IPR027421 DNA polymerase lambda lyase domain superfamily BMD_4724 f063829a838b0b12e4fdb363603e1276 570 PIRSF PIRSF005047 1 570 2.0E-241 T 13-10-2018 IPR022311 Uncharacterised conserved protein UCP005047, YshC KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4578 fbc2381bb57d91f88e9106ef7ca5b277 46 Pfam PF09501 Probable sporulation protein (Bac_small_yrzI) 1 45 1.6E-21 T 13-10-2018 IPR012655 Uncharacterised protein YrzI BMD_4578 fbc2381bb57d91f88e9106ef7ca5b277 46 TIGRFAM TIGR02413 Bac_small_yrzI: Bacillus tandem small hypothetical protein 1 45 1.4E-16 T 13-10-2018 IPR012655 Uncharacterised protein YrzI BMD_4572 0ce85cdeea6f3df2bf8ba6faf10bd4f1 170 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 56 129 1.5E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_4572 0ce85cdeea6f3df2bf8ba6faf10bd4f1 170 Pfam PF13242 HAD-hyrolase-like 90 135 8.0E-11 T 13-10-2018 BMD_4572 0ce85cdeea6f3df2bf8ba6faf10bd4f1 170 TIGRFAM TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA 2 164 2.1E-58 T 13-10-2018 IPR010021 HAD-superfamily phosphatase, YqeG-like BMD_4572 0ce85cdeea6f3df2bf8ba6faf10bd4f1 170 SUPERFAMILY SSF56784 15 149 3.64E-25 T 13-10-2018 IPR036412 HAD-like superfamily BMD_4572 0ce85cdeea6f3df2bf8ba6faf10bd4f1 170 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 27 137 1.1E-21 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 BMD_4572 0ce85cdeea6f3df2bf8ba6faf10bd4f1 170 Gene3D G3DSA:3.40.50.1000 19 153 1.9E-22 T 13-10-2018 IPR023214 HAD superfamily BMD_0349 6b6e69e25a00b7f86733fca44a67d104 97 Gene3D G3DSA:1.10.287.1060 1 97 1.5E-27 T 13-10-2018 BMD_0349 6b6e69e25a00b7f86733fca44a67d104 97 Pfam PF06013 Proteins of 100 residues with WXG 5 89 5.9E-25 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like BMD_0349 6b6e69e25a00b7f86733fca44a67d104 97 SUPERFAMILY SSF140453 4 96 4.97E-24 T 13-10-2018 IPR036689 ESAT-6-like superfamily BMD_0349 6b6e69e25a00b7f86733fca44a67d104 97 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 5 93 4.0E-27 T 13-10-2018 IPR010310 Type VII secretion system ESAT-6-like BMD_4947 920b21bc91879143e9829b1110f037e6 497 SUPERFAMILY SSF52949 10 176 8.24E-31 T 13-10-2018 BMD_4947 920b21bc91879143e9829b1110f037e6 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 2 496 34.387 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 SUPERFAMILY SSF53187 178 492 1.0E-111 T 13-10-2018 BMD_4947 920b21bc91879143e9829b1110f037e6 497 PRINTS PR00481 Cytosol aminopeptidase signature 258 275 2.2E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 PRINTS PR00481 Cytosol aminopeptidase signature 280 301 2.2E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 PRINTS PR00481 Cytosol aminopeptidase signature 317 338 2.2E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 PRINTS PR00481 Cytosol aminopeptidase signature 339 359 2.2E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 PRINTS PR00481 Cytosol aminopeptidase signature 367 382 2.2E-51 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 Gene3D G3DSA:3.40.220.10 7 159 3.5E-36 T 13-10-2018 BMD_4947 920b21bc91879143e9829b1110f037e6 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 182 487 9.6E-117 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 18 146 3.4E-21 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 343 350 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BMD_4947 920b21bc91879143e9829b1110f037e6 497 Gene3D G3DSA:3.40.630.10 169 493 1.1E-125 T 13-10-2018 BMD_2892 9579022d43c11cf1fd665a4624168417 453 Gene3D G3DSA:1.10.1060.10 10 116 1.1E-9 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_2892 9579022d43c11cf1fd665a4624168417 453 Pfam PF02754 Cysteine-rich domain 333 416 5.5E-12 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_2892 9579022d43c11cf1fd665a4624168417 453 Pfam PF02754 Cysteine-rich domain 205 286 1.5E-14 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_2892 9579022d43c11cf1fd665a4624168417 453 SUPERFAMILY SSF46548 23 112 3.5E-18 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_2892 9579022d43c11cf1fd665a4624168417 453 PIRSF PIRSF000139 13 446 4.9E-151 T 13-10-2018 BMD_2892 9579022d43c11cf1fd665a4624168417 453 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 33 44 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_2892 9579022d43c11cf1fd665a4624168417 453 Pfam PF13183 4Fe-4S dicluster domain 32 98 1.6E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BMD_2892 9579022d43c11cf1fd665a4624168417 453 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 84 95 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 ProSitePatterns PS00180 Glutamine synthetase signature 1. 52 70 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 SUPERFAMILY SSF55931 105 442 3.24E-130 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 441 5.4E-187 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 Pfam PF00120 Glutamine synthetase, catalytic domain 106 440 1.9E-142 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 SUPERFAMILY SSF54368 5 104 2.35E-34 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 234 249 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 SMART SM01230 105 354 4.3E-143 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 Gene3D G3DSA:3.10.20.70 2 107 1.2E-45 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 Gene3D G3DSA:3.30.590.10 108 444 1.2E-148 T 13-10-2018 BMD_4086 c50dc3f067695163c908ceef4aa5f79d 444 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 17 98 2.3E-33 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BMD_0346 7f74484a399f9b0cbc911715714c26ae 105 SUPERFAMILY SSF140453 20 93 4.45E-6 T 13-10-2018 IPR036689 ESAT-6-like superfamily BMD_3858 8e123bb976be30c14c57af5e5f2a094b 310 Gene3D G3DSA:3.40.1090.10 2 116 2.3E-21 T 13-10-2018 BMD_3858 8e123bb976be30c14c57af5e5f2a094b 310 Pfam PF01734 Patatin-like phospholipase 6 196 2.4E-28 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BMD_3858 8e123bb976be30c14c57af5e5f2a094b 310 SUPERFAMILY SSF52151 6 293 3.4E-39 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BMD_1487 ed832ab6adb997e43f8c6d8ae7b08eeb 366 Gene3D G3DSA:3.20.20.140 52 316 1.8E-111 T 13-10-2018 BMD_1487 ed832ab6adb997e43f8c6d8ae7b08eeb 366 Gene3D G3DSA:2.30.40.10 8 361 1.8E-111 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1487 ed832ab6adb997e43f8c6d8ae7b08eeb 366 SUPERFAMILY SSF51338 5 364 1.64E-12 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1487 ed832ab6adb997e43f8c6d8ae7b08eeb 366 Pfam PF01979 Amidohydrolase family 166 329 7.3E-6 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_1487 ed832ab6adb997e43f8c6d8ae7b08eeb 366 PIRSF PIRSF039004 1 366 6.6E-127 T 13-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 BMD_1487 ed832ab6adb997e43f8c6d8ae7b08eeb 366 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 4 364 9.1E-156 T 13-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 BMD_1487 ed832ab6adb997e43f8c6d8ae7b08eeb 366 SUPERFAMILY SSF51556 52 316 2.72E-65 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_5094 ddb3068c23a287d6c166d4a818267863 400 Gene3D G3DSA:3.40.50.1970 3 195 2.3E-58 T 13-10-2018 BMD_5094 ddb3068c23a287d6c166d4a818267863 400 Gene3D G3DSA:1.20.1090.10 197 396 1.1E-61 T 13-10-2018 BMD_5094 ddb3068c23a287d6c166d4a818267863 400 SUPERFAMILY SSF56796 12 394 3.93E-118 T 13-10-2018 BMD_5094 ddb3068c23a287d6c166d4a818267863 400 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 184 212 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_5094 ddb3068c23a287d6c166d4a818267863 400 Pfam PF00465 Iron-containing alcohol dehydrogenase 17 383 3.1E-116 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_5094 ddb3068c23a287d6c166d4a818267863 400 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 271 291 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_4099 5642066d87cb050fce06ce0802f91921 509 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 215 235 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 BMD_4099 5642066d87cb050fce06ce0802f91921 509 SUPERFAMILY SSF102114 198 434 6.15E-66 T 13-10-2018 BMD_4099 5642066d87cb050fce06ce0802f91921 509 Pfam PF01938 TRAM domain 441 502 5.8E-15 T 13-10-2018 IPR002792 TRAM domain BMD_4099 5642066d87cb050fce06ce0802f91921 509 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 67 499 1.5E-165 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 BMD_4099 5642066d87cb050fce06ce0802f91921 509 Gene3D G3DSA:3.80.30.20 210 443 1.6E-92 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BMD_4099 5642066d87cb050fce06ce0802f91921 509 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 66 503 74.67 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 BMD_4099 5642066d87cb050fce06ce0802f91921 509 Gene3D G3DSA:3.40.50.12160 66 200 3.5E-34 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily BMD_4099 5642066d87cb050fce06ce0802f91921 509 Pfam PF00919 Uncharacterized protein family UPF0004 67 168 4.2E-29 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 BMD_4099 5642066d87cb050fce06ce0802f91921 509 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 67 502 1.4E-211 T 13-10-2018 BMD_4099 5642066d87cb050fce06ce0802f91921 509 SMART SM00729 211 429 6.3E-66 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_4099 5642066d87cb050fce06ce0802f91921 509 Pfam PF04055 Radical SAM superfamily 215 386 2.3E-36 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_0990 1b6b3d7d6ce7bb0d24f0123e4d2bb04d 180 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 164 180 1.1E-4 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_0990 1b6b3d7d6ce7bb0d24f0123e4d2bb04d 180 Pfam PF00578 AhpC/TSA family 6 141 4.4E-40 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_0990 1b6b3d7d6ce7bb0d24f0123e4d2bb04d 180 PIRSF PIRSF000239 1 180 6.0E-59 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_0990 1b6b3d7d6ce7bb0d24f0123e4d2bb04d 180 Gene3D G3DSA:3.40.30.10 1 180 4.3E-74 T 13-10-2018 BMD_0990 1b6b3d7d6ce7bb0d24f0123e4d2bb04d 180 SUPERFAMILY SSF52833 4 178 3.12E-59 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 62 4.1E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 Gene3D G3DSA:1.10.10.10 1 81 1.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 SUPERFAMILY SSF46785 1 110 3.76E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 SUPERFAMILY SSF53850 87 284 1.36E-29 T 13-10-2018 BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 Pfam PF03466 LysR substrate binding domain 87 282 4.0E-30 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_0856 31aa686b78ab413cb9756f99d573dbc7 290 Gene3D G3DSA:3.40.190.290 82 284 1.4E-70 T 13-10-2018 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 SUPERFAMILY SSF56300 54 412 3.98E-78 T 13-10-2018 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 ProSitePatterns PS00786 5'-nucleotidase signature 2. 145 156 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Pfam PF02872 5'-nucleotidase, C-terminal domain 1011 1151 2.5E-32 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Pfam PF02872 5'-nucleotidase, C-terminal domain 414 613 3.6E-23 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Gene3D G3DSA:3.60.21.10 51 413 2.8E-121 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Gene3D G3DSA:3.60.21.10 700 1009 3.9E-80 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 SUPERFAMILY SSF55816 1010 1193 1.09E-38 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 ProSitePatterns PS00786 5'-nucleotidase signature 2. 784 795 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Gene3D G3DSA:3.90.780.10 1022 1203 1.0E-40 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Pfam PF00149 Calcineurin-like phosphoesterase 60 300 2.0E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Pfam PF00149 Calcineurin-like phosphoesterase 707 939 1.9E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 PRINTS PR01607 Apyrase family signature 57 75 1.3E-24 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 PRINTS PR01607 Apyrase family signature 283 306 1.3E-24 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 PRINTS PR01607 Apyrase family signature 257 274 1.3E-24 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 PRINTS PR01607 Apyrase family signature 587 606 1.3E-24 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 PRINTS PR01607 Apyrase family signature 335 355 1.3E-24 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 PRINTS PR01607 Apyrase family signature 486 509 1.3E-24 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 SUPERFAMILY SSF56300 700 1005 1.12E-74 T 13-10-2018 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 SUPERFAMILY SSF55816 414 651 3.4E-44 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_2688 293f7547d3da82610dc3d34f4f5a7965 1212 Gene3D G3DSA:3.90.780.10 466 650 1.4E-61 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 SUPERFAMILY SSF52518 5 326 2.95E-116 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 Gene3D G3DSA:3.40.50.970 332 539 2.5E-82 T 13-10-2018 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 339 2.1E-153 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 SUPERFAMILY SSF52518 342 528 7.94E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 Gene3D G3DSA:3.40.50.970 4 331 3.1E-125 T 13-10-2018 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 Pfam PF02780 Transketolase, C-terminal domain 550 658 5.7E-12 T 13-10-2018 IPR033248 Transketolase, C-terminal domain BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 SMART SM00861 355 526 5.6E-71 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 ProSitePatterns PS00802 Transketolase signature 2. 468 484 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 Pfam PF02779 Transketolase, pyrimidine binding domain 355 525 1.8E-46 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 SUPERFAMILY SSF52922 535 667 3.53E-42 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 667 1.1E-301 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 BMD_4073 8a41a387184735c57cc25f671e57f2c4 668 Gene3D G3DSA:3.40.50.920 541 668 7.5E-44 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 SUPERFAMILY SSF46785 2 112 2.95E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 Gene3D G3DSA:3.40.190.290 93 290 1.6E-40 T 13-10-2018 BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 Pfam PF03466 LysR substrate binding domain 92 285 1.4E-35 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.5E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.5E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.5E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 SUPERFAMILY SSF53850 93 287 2.31E-32 T 13-10-2018 BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.1E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1662 6c04bcbd46024e3b50619e6584ee32ad 292 Gene3D G3DSA:1.10.10.10 1 90 3.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1909 b8bbc06f6ed5b9a1d2110f0e5dc3213e 209 SUPERFAMILY SSF55811 5 154 4.72E-21 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_1909 b8bbc06f6ed5b9a1d2110f0e5dc3213e 209 Gene3D G3DSA:3.90.79.10 1 208 3.5E-35 T 13-10-2018 BMD_4963 f767afb13dde265855a512676cb78bf2 329 Gene3D G3DSA:3.40.50.720 100 289 2.9E-121 T 13-10-2018 BMD_4963 f767afb13dde265855a512676cb78bf2 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BMD_4963 f767afb13dde265855a512676cb78bf2 329 SUPERFAMILY SSF52283 3 140 2.46E-36 T 13-10-2018 BMD_4963 f767afb13dde265855a512676cb78bf2 329 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 151 178 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BMD_4963 f767afb13dde265855a512676cb78bf2 329 Gene3D G3DSA:3.40.50.720 6 316 2.9E-121 T 13-10-2018 BMD_4963 f767afb13dde265855a512676cb78bf2 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 321 2.6E-33 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BMD_4963 f767afb13dde265855a512676cb78bf2 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 289 8.5E-65 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BMD_4963 f767afb13dde265855a512676cb78bf2 329 SUPERFAMILY SSF51735 106 290 8.29E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 Gene3D G3DSA:3.40.50.200 7 316 1.5E-120 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 252 262 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 PRINTS PR00723 Subtilisin serine protease family (S8) signature 44 63 7.6E-25 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 PRINTS PR00723 Subtilisin serine protease family (S8) signature 86 99 7.6E-25 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 PRINTS PR00723 Subtilisin serine protease family (S8) signature 251 267 7.6E-25 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 SUPERFAMILY SSF52743 25 295 9.16E-87 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 90 100 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 Pfam PF00082 Subtilase family 44 288 3.6E-56 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BMD_0822 7bce29747231e8cb25d89b9f5006d233 328 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 49 60 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BMD_0713 af7dca06a1effc4332ca40b0a6ebe000 467 Gene3D G3DSA:1.20.1740.10 1 466 1.0E-60 T 13-10-2018 BMD_0713 af7dca06a1effc4332ca40b0a6ebe000 467 Pfam PF13520 Amino acid permease 7 428 4.8E-51 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0713 af7dca06a1effc4332ca40b0a6ebe000 467 PIRSF PIRSF006060 1 463 2.2E-53 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1661 87691865b1fc4b2fb11e278d349dcf1f 299 SUPERFAMILY SSF103481 188 289 5.49E-10 T 13-10-2018 BMD_1661 87691865b1fc4b2fb11e278d349dcf1f 299 SUPERFAMILY SSF103481 42 144 1.96E-16 T 13-10-2018 BMD_1661 87691865b1fc4b2fb11e278d349dcf1f 299 Pfam PF00892 EamA-like transporter family 151 286 1.9E-23 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_1661 87691865b1fc4b2fb11e278d349dcf1f 299 Pfam PF00892 EamA-like transporter family 13 139 9.2E-25 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 7 82 23.974 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 PRINTS PR00973 Ribosomal protein S17 family signature 68 75 1.0E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 PRINTS PR00973 Ribosomal protein S17 family signature 26 49 1.0E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 PRINTS PR00973 Ribosomal protein S17 family signature 58 68 1.0E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 SUPERFAMILY SSF50249 7 84 2.53E-31 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 ProSitePatterns PS00056 Ribosomal protein S17 signature. 58 70 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 Pfam PF00366 Ribosomal protein S17 12 79 1.8E-32 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 78 6.0E-33 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 Gene3D G3DSA:2.40.50.140 6 86 2.5E-35 T 13-10-2018 BMD_0143 050c6830d9eb294b2ae506c11a594d0f 87 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 78 3.2E-35 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Pfam PF04851 Type III restriction enzyme, res subunit 14 138 1.3E-12 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 SUPERFAMILY SSF52540 32 594 1.45E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 SMART SM00487 9 425 1.4E-25 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Pfam PF02151 UvrB/uvrC motif 624 657 1.6E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 SUPERFAMILY SSF52540 3 414 4.36E-146 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Gene3D G3DSA:3.40.50.300 1 242 1.0E-84 T 13-10-2018 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 4 656 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 SMART SM00490 459 545 4.4E-20 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Pfam PF12344 Ultra-violet resistance protein B 551 593 1.7E-22 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Pfam PF00271 Helicase conserved C-terminal domain 440 544 4.9E-19 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Gene3D G3DSA:3.40.50.300 266 413 7.9E-54 T 13-10-2018 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 658 44.952 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 Gene3D G3DSA:3.40.50.300 414 595 4.6E-54 T 13-10-2018 BMD_5069 6b8d848a46c1d62cbc17fc57e40c25b0 659 SUPERFAMILY SSF46600 614 657 4.58E-10 T 13-10-2018 IPR036876 UVR domain superfamily BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 341 8.9E-131 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Pfam PF13184 NusA-like KH domain 229 296 3.1E-27 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 SUPERFAMILY SSF50249 132 198 7.8E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Gene3D G3DSA:3.30.1480.10 1 124 1.2E-49 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Pfam PF00575 S1 RNA binding domain 132 195 2.4E-12 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 SUPERFAMILY SSF54814 278 342 3.99E-17 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Pfam PF08529 NusA N-terminal domain 4 123 8.9E-44 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Gene3D G3DSA:3.30.300.20 277 368 8.6E-34 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 367 30.533 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 SUPERFAMILY SSF69705 1 126 1.09E-43 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Gene3D G3DSA:3.30.300.20 198 276 1.0E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 SMART SM00316 133 199 5.7E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 Gene3D G3DSA:2.40.50.140 136 197 1.0E-25 T 13-10-2018 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 SMART SM00322 302 358 9.4 T 13-10-2018 IPR004087 K Homology domain GO:0003676 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 SMART SM00322 229 301 5.5E-4 T 13-10-2018 IPR004087 K Homology domain GO:0003676 BMD_4141 1bc75753f64d9e3b1d1a47bc9a20feeb 370 SUPERFAMILY SSF54814 199 277 1.96E-29 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BMD_0575 2fcedfac4097465c4a23d43ddbe2bf6d 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 259 6.7E-48 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_0575 2fcedfac4097465c4a23d43ddbe2bf6d 267 Gene3D G3DSA:3.90.226.10 1 196 3.6E-51 T 13-10-2018 BMD_0575 2fcedfac4097465c4a23d43ddbe2bf6d 267 SUPERFAMILY SSF52096 8 260 3.26E-62 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_0575 2fcedfac4097465c4a23d43ddbe2bf6d 267 Gene3D G3DSA:1.10.12.10 203 259 5.9E-18 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BMD_4788 ad6c81189f04aa4a600059dbe347f605 62 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 38 52 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_4788 ad6c81189f04aa4a600059dbe347f605 62 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 5 59 8.7E-22 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_4788 ad6c81189f04aa4a600059dbe347f605 62 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 20 29 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_4788 ad6c81189f04aa4a600059dbe347f605 62 Gene3D G3DSA:1.10.8.910 5 62 9.4E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_3219 3d3bed7f485a8f3e1cc9bd48fb698181 316 SUPERFAMILY SSF81345 3 312 7.32E-67 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_3219 3d3bed7f485a8f3e1cc9bd48fb698181 316 Pfam PF01032 FecCD transport family 10 311 2.4E-65 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_3219 3d3bed7f485a8f3e1cc9bd48fb698181 316 Gene3D G3DSA:1.10.3470.10 2 314 1.7E-62 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_5084 9c19488062a708442189d681ad03996b 838 Gene3D G3DSA:3.40.50.300 397 570 0.0 T 13-10-2018 BMD_5084 9c19488062a708442189d681ad03996b 838 Gene3D G3DSA:1.10.1200.230 621 705 0.0 T 13-10-2018 BMD_5084 9c19488062a708442189d681ad03996b 838 SUPERFAMILY SSF52540 7 395 2.38E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5084 9c19488062a708442189d681ad03996b 838 PRINTS PR00906 SecA protein signature 319 341 3.5E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 PRINTS PR00906 SecA protein signature 168 188 3.5E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 PRINTS PR00906 SecA protein signature 99 113 3.5E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 PRINTS PR00906 SecA protein signature 393 406 3.5E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 PRINTS PR00906 SecA protein signature 61 85 3.5E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 PRINTS PR00906 SecA protein signature 115 125 3.5E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 PRINTS PR00906 SecA protein signature 356 373 3.5E-71 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 Gene3D G3DSA:3.90.1440.10 227 348 0.0 T 13-10-2018 BMD_5084 9c19488062a708442189d681ad03996b 838 Pfam PF02810 SEC-C motif 818 836 2.9E-9 T 13-10-2018 IPR004027 SEC-C motif BMD_5084 9c19488062a708442189d681ad03996b 838 Gene3D G3DSA:1.10.3060.10 571 777 0.0 T 13-10-2018 BMD_5084 9c19488062a708442189d681ad03996b 838 SUPERFAMILY SSF81767 225 348 1.44E-46 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 BMD_5084 9c19488062a708442189d681ad03996b 838 SMART SM00958 226 338 1.9E-66 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 BMD_5084 9c19488062a708442189d681ad03996b 838 SMART SM00957 5 382 2.0E-281 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BMD_5084 9c19488062a708442189d681ad03996b 838 SUPERFAMILY SSF81886 571 826 4.58E-80 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily BMD_5084 9c19488062a708442189d681ad03996b 838 Pfam PF07516 SecA Wing and Scaffold domain 568 778 1.8E-65 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 BMD_5084 9c19488062a708442189d681ad03996b 838 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 26 496 1.1E-242 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 Pfam PF01043 SecA preprotein cross-linking domain 230 338 4.8E-41 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 BMD_5084 9c19488062a708442189d681ad03996b 838 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 781 19.728 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BMD_5084 9c19488062a708442189d681ad03996b 838 Gene3D G3DSA:3.40.50.300 15 396 0.0 T 13-10-2018 BMD_5084 9c19488062a708442189d681ad03996b 838 SUPERFAMILY SSF52540 397 569 8.93E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5084 9c19488062a708442189d681ad03996b 838 Pfam PF00271 Helicase conserved C-terminal domain 418 530 5.0E-5 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_5084 9c19488062a708442189d681ad03996b 838 ProSitePatterns PS01312 SecA family signature. 480 495 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 BMD_5084 9c19488062a708442189d681ad03996b 838 Pfam PF07517 SecA DEAD-like domain 6 382 8.9E-129 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 SMART SM00388 230 296 1.7E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 SMART SM00387 340 450 2.9E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 SMART SM00304 177 229 2.0E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 SUPERFAMILY SSF47384 213 296 1.79E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 Gene3D G3DSA:1.10.8.500 176 225 8.0E-10 T 13-10-2018 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 230 295 2.1E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 2.7E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 2.7E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 447 2.7E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 2.7E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 Pfam PF00672 HAMP domain 179 225 2.3E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 SUPERFAMILY SSF55874 286 448 2.62E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 448 7.0E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 Gene3D G3DSA:1.10.287.130 226 292 2.9E-19 T 13-10-2018 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 SUPERFAMILY SSF158472 178 226 4.71E-10 T 13-10-2018 BMD_2075 ce802a8147554179d6f0ee15bcfddb29 459 Gene3D G3DSA:3.30.565.10 293 448 2.7E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3803 57da49575c3f21f68784a74ed63daedf 150 Gene3D G3DSA:1.10.10.10 1 142 2.3E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3803 57da49575c3f21f68784a74ed63daedf 150 Pfam PF01047 MarR family 30 85 1.5E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3803 57da49575c3f21f68784a74ed63daedf 150 SUPERFAMILY SSF46785 4 136 1.47E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3803 57da49575c3f21f68784a74ed63daedf 150 SMART SM00347 22 121 5.7E-29 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3803 57da49575c3f21f68784a74ed63daedf 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 46 62 5.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3803 57da49575c3f21f68784a74ed63daedf 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 5.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3803 57da49575c3f21f68784a74ed63daedf 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 131 5.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Pfam PF14493 Helix-turn-helix domain 614 702 9.3E-30 T 13-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 SMART SM00956 406 509 1.1E-39 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Pfam PF00271 Helicase conserved C-terminal domain 217 324 5.1E-20 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Gene3D G3DSA:3.40.50.300 203 334 1.0E-40 T 13-10-2018 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Pfam PF09382 RQC domain 404 510 1.0E-29 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 SUPERFAMILY SSF46785 397 539 4.76E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 SMART SM00341 514 594 6.9E-18 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Pfam PF00270 DEAD/DEAH box helicase 22 182 7.1E-19 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Pfam PF00570 HRDC domain 518 583 1.1E-19 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Pfam PF16124 RecQ zinc-binding 336 398 6.7E-18 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 9 586 7.9E-238 T 13-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Gene3D G3DSA:1.10.150.80 513 594 3.3E-24 T 13-10-2018 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Gene3D G3DSA:1.10.10.10 335 512 6.9E-44 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 SMART SM00490 244 325 2.1E-26 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 SUPERFAMILY SSF52540 59 347 1.08E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 10 457 1.1E-149 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 SUPERFAMILY SSF47819 517 591 1.83E-24 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 Gene3D G3DSA:3.40.50.300 2 202 2.0E-76 T 13-10-2018 BMD_2212 8b8440a0c26fc52173bdef821d8c8947 711 SMART SM00487 15 212 1.7E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_4623 d13fd3db048aee4084b4e7698ba80d35 217 Pfam PF04239 Protein of unknown function (DUF421) 88 193 1.7E-35 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_4623 d13fd3db048aee4084b4e7698ba80d35 217 Gene3D G3DSA:3.30.240.20 158 215 1.3E-11 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_4623 d13fd3db048aee4084b4e7698ba80d35 217 Gene3D G3DSA:3.30.240.20 80 152 5.4E-25 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_3349 dfa0baae8b1c0cf272d517d19a1277ae 75 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 7 31 - T 13-10-2018 IPR001455 TusA-like domain BMD_3349 dfa0baae8b1c0cf272d517d19a1277ae 75 Pfam PF01206 Sulfurtransferase TusA 6 74 9.4E-25 T 13-10-2018 IPR001455 TusA-like domain BMD_3349 dfa0baae8b1c0cf272d517d19a1277ae 75 SUPERFAMILY SSF64307 2 75 4.84E-26 T 13-10-2018 IPR036868 TusA-like domain superfamily BMD_3349 dfa0baae8b1c0cf272d517d19a1277ae 75 Gene3D G3DSA:3.30.110.40 1 75 2.0E-30 T 13-10-2018 IPR036868 TusA-like domain superfamily BMD_0761 980279025335bd5733ec5e7b34d60457 203 SUPERFAMILY SSF52833 3 192 7.06E-31 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_0761 980279025335bd5733ec5e7b34d60457 203 Gene3D G3DSA:3.40.30.10 1 194 1.4E-36 T 13-10-2018 BMD_0761 980279025335bd5733ec5e7b34d60457 203 Pfam PF01323 DSBA-like thioredoxin domain 5 191 4.3E-26 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 Gene3D G3DSA:3.30.420.40 5 347 7.3E-152 T 13-10-2018 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 358 377 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 172 182 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 335 355 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 439 455 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 3 16 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 53 61 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 112 132 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 31 43 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 PRINTS PR00301 70kDa heat shock protein signature 304 320 7.9E-80 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 SUPERFAMILY SSF53067 1 157 3.89E-58 T 13-10-2018 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 166 179 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 SUPERFAMILY SSF100920 354 510 3.14E-61 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 Gene3D G3DSA:3.90.640.10 198 279 7.3E-152 T 13-10-2018 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 307 321 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 Gene3D G3DSA:2.60.34.10 348 476 3.1E-57 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 Gene3D G3DSA:1.20.1270.10 477 579 6.5E-26 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 SUPERFAMILY SSF100934 477 576 1.09E-13 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 SUPERFAMILY SSF53067 160 352 1.98E-66 T 13-10-2018 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 573 1.4E-283 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 600 37.033 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 Pfam PF00012 Hsp70 protein 76 573 1.2E-220 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BMD_4551 36fb06c6b7c6cb369ccc60bf46562c0c 605 Gene3D G3DSA:3.30.420.40 159 337 7.3E-152 T 13-10-2018 BMD_4128 2a400fceb386c58816e1fca2ae91d9ae 299 TIGRFAM TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit 5 289 1.8E-138 T 13-10-2018 IPR014215 Dipicolinic acid synthetase subunit A BMD_4128 2a400fceb386c58816e1fca2ae91d9ae 299 Gene3D G3DSA:3.40.50.720 126 272 2.6E-107 T 13-10-2018 BMD_4128 2a400fceb386c58816e1fca2ae91d9ae 299 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 152 293 4.1E-8 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BMD_4128 2a400fceb386c58816e1fca2ae91d9ae 299 SUPERFAMILY SSF51735 131 269 2.2E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4128 2a400fceb386c58816e1fca2ae91d9ae 299 Gene3D G3DSA:3.40.50.720 7 288 2.6E-107 T 13-10-2018 BMD_4128 2a400fceb386c58816e1fca2ae91d9ae 299 Pfam PF16924 Dipicolinate synthase subunit A N-terminal domain 6 123 8.2E-34 T 13-10-2018 IPR031629 Dipicolinate synthase subunit A, N-terminal BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 SUPERFAMILY SSF54999 5 102 1.24E-38 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.4E-46 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.6E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.6E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.6E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 28.125 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 Pfam PF00338 Ribosomal protein S10p/S20e 7 101 1.0E-36 T 13-10-2018 IPR027486 Ribosomal protein S10 domain BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 SMART SM01403 7 101 2.8E-60 T 13-10-2018 IPR027486 Ribosomal protein S10 domain BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 Gene3D G3DSA:3.30.70.600 1 62 8.6E-21 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily BMD_0133 434c8f49b795b35c958f072b613dc5b9 102 Gene3D G3DSA:3.30.70.600 65 102 1.3E-14 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily BMD_4009 d63686417e28aaaf25bc8ac1954ab5ae 482 Pfam PF01740 STAS domain 391 477 1.4E-8 T 13-10-2018 IPR002645 STAS domain BMD_4009 d63686417e28aaaf25bc8ac1954ab5ae 482 SUPERFAMILY SSF52091 389 479 2.55E-12 T 13-10-2018 IPR036513 STAS domain superfamily BMD_4009 d63686417e28aaaf25bc8ac1954ab5ae 482 Pfam PF00916 Sulfate permease family 163 354 3.2E-34 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BMD_4009 d63686417e28aaaf25bc8ac1954ab5ae 482 Pfam PF00916 Sulfate permease family 14 143 8.2E-28 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BMD_4009 d63686417e28aaaf25bc8ac1954ab5ae 482 ProSitePatterns PS01130 SLC26A transporters signature. 42 63 - T 13-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 BMD_4009 d63686417e28aaaf25bc8ac1954ab5ae 482 Gene3D G3DSA:3.30.750.24 381 477 2.6E-26 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2225 77656d81a1e013fc7f084dd02eb76bfb 129 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 9.6E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2225 77656d81a1e013fc7f084dd02eb76bfb 129 Gene3D G3DSA:1.10.10.10 9 125 5.5E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2225 77656d81a1e013fc7f084dd02eb76bfb 129 SUPERFAMILY SSF46785 5 78 9.87E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2225 77656d81a1e013fc7f084dd02eb76bfb 129 SMART SM00345 16 75 8.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2349 6ef0e9b2f2781198c14dfcd575e7dfcb 420 Gene3D G3DSA:3.30.470.20 106 420 5.9E-110 T 13-10-2018 BMD_2349 6ef0e9b2f2781198c14dfcd575e7dfcb 420 Gene3D G3DSA:3.40.50.20 1 102 7.1E-34 T 13-10-2018 BMD_2349 6ef0e9b2f2781198c14dfcd575e7dfcb 420 Pfam PF13535 ATP-grasp domain 145 296 1.1E-31 T 13-10-2018 BMD_2349 6ef0e9b2f2781198c14dfcd575e7dfcb 420 SMART SM01209 111 292 0.0075 T 13-10-2018 BMD_2349 6ef0e9b2f2781198c14dfcd575e7dfcb 420 SUPERFAMILY SSF56059 112 321 1.21E-40 T 13-10-2018 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 Pfam PF13396 Phospholipase_D-nuclease N-terminal 43 81 2.3E-6 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 31 505 1.6E-188 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 Pfam PF13091 PLD-like domain 348 467 1.0E-27 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 Pfam PF13091 PLD-like domain 155 298 2.6E-11 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 SMART SM00155 418 445 4.0E-8 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 SMART SM00155 238 265 8.5E-6 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 Hamap MF_01916 Cardiolipin synthase. 33 505 43.561 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 SUPERFAMILY SSF56024 123 336 1.92E-52 T 13-10-2018 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 SUPERFAMILY SSF56024 290 490 1.7E-47 T 13-10-2018 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 Gene3D G3DSA:3.30.870.10 136 317 6.2E-47 T 13-10-2018 BMD_0720 32b7a2e4081c3495d2f5634bb89c0854 505 Gene3D G3DSA:3.30.870.10 320 504 3.7E-32 T 13-10-2018 BMD_0279 a00147e81f6d543f289676da5908cbe4 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 3 340 47.487 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0279 a00147e81f6d543f289676da5908cbe4 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 63 160 4.8E-17 T 13-10-2018 IPR016188 PurM-like, N-terminal domain BMD_0279 a00147e81f6d543f289676da5908cbe4 345 SUPERFAMILY SSF55326 2 167 2.54E-50 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BMD_0279 a00147e81f6d543f289676da5908cbe4 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 337 7.4E-37 T 13-10-2018 IPR010918 PurM-like, C-terminal domain BMD_0279 a00147e81f6d543f289676da5908cbe4 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 4 333 1.8E-142 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0279 a00147e81f6d543f289676da5908cbe4 345 Gene3D G3DSA:3.30.1330.10 1 167 1.1E-68 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BMD_0279 a00147e81f6d543f289676da5908cbe4 345 Gene3D G3DSA:3.90.650.10 168 345 1.3E-69 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BMD_0279 a00147e81f6d543f289676da5908cbe4 345 SUPERFAMILY SSF56042 168 338 1.27E-58 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BMD_0945 68ee091cece935257c91dee9b328dfa9 439 Pfam PF00202 Aminotransferase class-III 22 428 5.0E-134 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0945 68ee091cece935257c91dee9b328dfa9 439 Gene3D G3DSA:3.90.1150.10 8 424 1.2E-149 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0945 68ee091cece935257c91dee9b328dfa9 439 PIRSF PIRSF000521 123 431 3.2E-42 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0945 68ee091cece935257c91dee9b328dfa9 439 PIRSF PIRSF000521 26 131 1.9E-8 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0945 68ee091cece935257c91dee9b328dfa9 439 SUPERFAMILY SSF53383 24 429 6.4E-128 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0945 68ee091cece935257c91dee9b328dfa9 439 Gene3D G3DSA:3.40.640.10 61 327 1.2E-149 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0945 68ee091cece935257c91dee9b328dfa9 439 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 Gene3D G3DSA:2.40.340.10 338 406 9.5E-115 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 186 323 1.1E-30 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 SUPERFAMILY SSF63867 336 412 1.31E-13 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 Gene3D G3DSA:3.40.980.10 184 337 9.5E-115 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 176 1.0E-36 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 SUPERFAMILY SSF53218 186 329 1.57E-37 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 Gene3D G3DSA:3.90.105.10 27 183 9.5E-115 T 13-10-2018 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 SUPERFAMILY SSF63882 8 184 6.41E-49 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 Gene3D G3DSA:2.170.190.11 50 150 9.5E-115 T 13-10-2018 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 Pfam PF03454 MoeA C-terminal region (domain IV) 340 410 3.5E-17 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 SMART SM00852 189 327 3.0E-37 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_3781 8fe0db1a42f4a96188e62e29252113ca 421 Pfam PF00994 Probable molybdopterin binding domain 189 326 7.4E-23 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 Gene3D G3DSA:2.40.240.60 356 428 2.6E-18 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 SUPERFAMILY SSF52540 160 331 1.1E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 1.6E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 1.6E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 1.6E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 1.6E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 PIRSF PIRSF002401 1 376 1.2E-142 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 Gene3D G3DSA:2.70.210.12 1 157 9.3E-61 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 Gene3D G3DSA:3.40.50.300 158 342 1.2E-61 T 13-10-2018 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 328 3.5E-142 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 Pfam PF01926 50S ribosome-binding GTPase 160 283 4.5E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 Pfam PF01018 GTP1/OBG 3 157 2.0E-59 T 13-10-2018 IPR006169 GTP1/OBG domain BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 160 320 8.3E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 SUPERFAMILY SSF82051 1 157 1.83E-55 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 358 426 9.2E-27 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 Pfam PF09269 Domain of unknown function (DUF1967) 358 426 1.0E-25 T 13-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 Hamap MF_01454 GTPase Obg [obg]. 1 329 47.907 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BMD_4643 3b6ff874c5927d412c89206fa7470fb0 428 SUPERFAMILY SSF102741 356 428 1.44E-23 T 13-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily BMD_1709 f7178e0b443ec03fafc77ec3087cfe8f 229 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 137 226 2.2E-5 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_1709 f7178e0b443ec03fafc77ec3087cfe8f 229 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 3 108 2.2E-15 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 Pfam PF13616 PPIC-type PPIASE domain 146 245 5.4E-30 T 13-10-2018 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 Hamap MF_01145 Foldase protein PrsA [prsA]. 3 290 16.294 T 13-10-2018 IPR023059 Foldase protein PrsA GO:0003755 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 182 203 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 Gene3D G3DSA:3.10.50.40 154 245 2.4E-57 T 13-10-2018 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 Gene3D G3DSA:1.10.4030.30 30 268 2.4E-57 T 13-10-2018 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 SUPERFAMILY SSF54534 130 242 6.08E-34 T 13-10-2018 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 Pfam PF13624 SurA N-terminal domain 3 127 2.0E-10 T 13-10-2018 BMD_2008 a06229beda8a87d89590321e4ec52f35 291 SUPERFAMILY SSF109998 29 183 4.97E-32 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 Gene3D G3DSA:1.10.40.30 349 430 1.3E-33 T 13-10-2018 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 427 2.9E-24 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 Pfam PF00206 Lyase 6 286 1.0E-74 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 428 3.8E-182 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 2.0E-26 T 13-10-2018 IPR000362 Fumarate lyase family BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 2.0E-26 T 13-10-2018 IPR000362 Fumarate lyase family BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 2.0E-26 T 13-10-2018 IPR000362 Fumarate lyase family BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 2.0E-26 T 13-10-2018 IPR000362 Fumarate lyase family BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 3.3E-10 T 13-10-2018 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 3.3E-10 T 13-10-2018 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 3.3E-10 T 13-10-2018 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 3.3E-10 T 13-10-2018 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 Gene3D G3DSA:1.10.275.10 1 92 1.8E-39 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 SUPERFAMILY SSF48557 3 427 8.8E-140 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 Gene3D G3DSA:1.20.200.10 93 348 1.4E-102 T 13-10-2018 BMD_0273 a2abbe4b20bd493f9f00ece4284e4079 430 SMART SM00998 349 429 2.5E-38 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_4456 eda6a21df875015535f5c0ee1098fa08 315 TIGRFAM TIGR02858 spore_III_AA: stage III sporulation protein AA 29 295 7.7E-121 T 13-10-2018 IPR014217 Sporulation stage III, protein AA BMD_4456 eda6a21df875015535f5c0ee1098fa08 315 Gene3D G3DSA:3.40.50.300 118 297 2.9E-25 T 13-10-2018 BMD_4456 eda6a21df875015535f5c0ee1098fa08 315 SMART SM00382 136 285 2.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4456 eda6a21df875015535f5c0ee1098fa08 315 SUPERFAMILY SSF52540 17 270 8.27E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3058 4c706826cffeec3e6a84b14cffc0689c 245 Gene3D G3DSA:3.40.109.10 1 245 4.4E-82 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_3058 4c706826cffeec3e6a84b14cffc0689c 245 SUPERFAMILY SSF55469 1 244 8.77E-67 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_3058 4c706826cffeec3e6a84b14cffc0689c 245 Pfam PF00881 Nitroreductase family 8 164 2.2E-22 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_3058 4c706826cffeec3e6a84b14cffc0689c 245 PIRSF PIRSF005426 1 245 3.9E-88 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 BMD_1486 e7c221442410cd76baa1aa84785b451a 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 3.8E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1486 e7c221442410cd76baa1aa84785b451a 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 93 104 3.8E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1486 e7c221442410cd76baa1aa84785b451a 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 195 3.8E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1486 e7c221442410cd76baa1aa84785b451a 307 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 3.8E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1486 e7c221442410cd76baa1aa84785b451a 307 Pfam PF00106 short chain dehydrogenase 16 216 1.6E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1486 e7c221442410cd76baa1aa84785b451a 307 SUPERFAMILY SSF51735 14 250 9.19E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1486 e7c221442410cd76baa1aa84785b451a 307 Gene3D G3DSA:3.40.50.720 1 304 3.6E-81 T 13-10-2018 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 Gene3D G3DSA:3.30.110.10 75 167 8.0E-38 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 SUPERFAMILY SSF55200 78 167 4.84E-33 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 79 164 3.1E-38 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 ProSitePatterns PS00938 Initiation factor 3 signature. 54 67 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 SUPERFAMILY SSF54364 2 74 1.16E-29 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 166 29.938 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 3 165 7.5E-76 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 3 72 2.3E-32 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BMD_4738 6a4b85ea8a398c925d5a83193ebce9fc 167 Gene3D G3DSA:3.10.20.80 1 74 6.5E-34 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 SUPERFAMILY SSF53720 10 420 1.03E-112 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 Pfam PF00171 Aldehyde dehydrogenase family 8 290 3.2E-19 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 17 410 8.3E-157 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 9 420 41.154 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 Gene3D G3DSA:3.40.605.10 22 415 2.8E-165 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 327 349 - T 13-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 Gene3D G3DSA:3.40.309.10 230 378 2.8E-165 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_2245 5c9cb68c7e6eaa53c7a05caaedaea2cc 420 PIRSF PIRSF000151 2 420 7.8E-177 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BMD_0940 18f084fe264f18bf90e6b16e59c87165 122 SMART SM00448 2 115 3.3E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0940 18f084fe264f18bf90e6b16e59c87165 122 Gene3D G3DSA:3.40.50.12740 1 122 2.0E-39 T 13-10-2018 BMD_0940 18f084fe264f18bf90e6b16e59c87165 122 Pfam PF00072 Response regulator receiver domain 4 115 9.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0940 18f084fe264f18bf90e6b16e59c87165 122 SUPERFAMILY SSF52172 1 120 1.1E-37 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 Gene3D G3DSA:3.30.70.2740 336 417 3.5E-15 T 13-10-2018 BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 44 456 1.0E-175 T 13-10-2018 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 Pfam PF01565 FAD binding domain 41 179 5.2E-42 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 SUPERFAMILY SSF56176 5 217 1.12E-70 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 Pfam PF02913 FAD linked oxidases, C-terminal domain 216 457 7.2E-72 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 SUPERFAMILY SSF55103 220 460 2.45E-67 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 Gene3D G3DSA:3.30.465.40 5 238 7.6E-77 T 13-10-2018 BMD_2635 05290c0db4dc334a8d08e63fb995212f 470 Gene3D G3DSA:1.10.45.10 418 458 4.3E-11 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BMD_4843 14c972e216e3b97adfc4da606d36cacb 258 SUPERFAMILY SSF53474 7 254 2.55E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4843 14c972e216e3b97adfc4da606d36cacb 258 Pfam PF12146 Serine aminopeptidase, S33 8 242 2.4E-52 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_4843 14c972e216e3b97adfc4da606d36cacb 258 Gene3D G3DSA:3.40.50.1820 1 258 1.7E-45 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3016 b7f704588dc22272ebea3aec0411ae87 93 SUPERFAMILY SSF47240 3 85 1.07E-27 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_3016 b7f704588dc22272ebea3aec0411ae87 93 Pfam PF00210 Ferritin-like domain 5 80 3.2E-19 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BMD_3016 b7f704588dc22272ebea3aec0411ae87 93 Gene3D G3DSA:1.20.1260.10 2 92 1.5E-34 T 13-10-2018 IPR012347 Ferritin-like BMD_3016 b7f704588dc22272ebea3aec0411ae87 93 ProSitePatterns PS00818 Dps protein family signature 1. 25 41 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 BMD_3016 b7f704588dc22272ebea3aec0411ae87 93 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 49 65 1.7E-10 T 13-10-2018 IPR002177 DNA-binding protein Dps BMD_3016 b7f704588dc22272ebea3aec0411ae87 93 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 25 41 1.7E-10 T 13-10-2018 IPR002177 DNA-binding protein Dps BMD_2894 d901ff6fc5c422d4a9e3faaf4f4d731a 566 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 16 557 3.2E-187 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 BMD_2894 d901ff6fc5c422d4a9e3faaf4f4d731a 566 Pfam PF02652 L-lactate permease 17 557 3.7E-205 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 BMD_1727 4432ecbe50d88850102176c97294f3ec 140 Gene3D G3DSA:3.40.50.2300 1 140 4.0E-58 T 13-10-2018 BMD_1727 4432ecbe50d88850102176c97294f3ec 140 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 7 135 5.2E-24 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BMD_1727 4432ecbe50d88850102176c97294f3ec 140 TIGRFAM TIGR02691 arsC_pI258_fam: arsenate reductase (thioredoxin) 6 135 9.0E-70 T 13-10-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 BMD_1727 4432ecbe50d88850102176c97294f3ec 140 SMART SM00226 4 138 3.8E-58 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BMD_1727 4432ecbe50d88850102176c97294f3ec 140 SUPERFAMILY SSF52788 4 137 5.49E-45 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily BMD_1727 4432ecbe50d88850102176c97294f3ec 140 Hamap MF_01624 Arsenate reductase [arsC]. 1 138 48.29 T 13-10-2018 IPR014064 Arsenate reductase ArsC GO:0004725|GO:0030612|GO:0046685 BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 38 53 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 PRINTS PR00107 Phosphocarrier protein signature 37 52 3.8E-16 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 PRINTS PR00107 Phosphocarrier protein signature 12 28 3.8E-16 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 PRINTS PR00107 Phosphocarrier protein signature 52 69 3.8E-16 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 2 80 6.0E-26 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 SUPERFAMILY SSF55594 2 83 3.27E-26 T 13-10-2018 IPR035895 HPr-like superfamily BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 Pfam PF00381 PTS HPr component phosphorylation site 2 81 1.9E-28 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_5045 10158bd7c7a853a23bd46356e8688e2e 84 Gene3D G3DSA:3.30.1340.10 1 84 2.6E-31 T 13-10-2018 IPR035895 HPr-like superfamily BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 Gene3D G3DSA:3.10.410.10 449 538 6.7E-36 T 13-10-2018 BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 SUPERFAMILY SSF52540 10 560 3.1E-248 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 Gene3D G3DSA:3.40.50.300 12 444 2.0E-208 T 13-10-2018 BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 Pfam PF01268 Formate--tetrahydrofolate ligase 8 562 2.2E-273 T 13-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 Gene3D G3DSA:3.30.1510.10 135 253 2.0E-208 T 13-10-2018 BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 334 345 - T 13-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 7 562 48.953 T 13-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BMD_1938 6d83b6237fe49705ebe2cb05591d073b 562 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 109 119 - T 13-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BMD_3443 277aeb56793db348883a990e580bc28d 225 SMART SM00448 3 112 9.2E-45 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3443 277aeb56793db348883a990e580bc28d 225 Gene3D G3DSA:1.10.10.10 130 225 2.1E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3443 277aeb56793db348883a990e580bc28d 225 Gene3D G3DSA:3.40.50.2300 1 129 6.6E-38 T 13-10-2018 BMD_3443 277aeb56793db348883a990e580bc28d 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 222 9.3E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3443 277aeb56793db348883a990e580bc28d 225 SUPERFAMILY SSF52172 3 181 7.54E-42 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3443 277aeb56793db348883a990e580bc28d 225 SMART SM00862 148 223 3.4E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3443 277aeb56793db348883a990e580bc28d 225 Pfam PF00072 Response regulator receiver domain 5 112 1.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2804 e7586ede6564b79b571336e505748d0d 303 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 286 6.0E-28 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 251 273 1.8E-14 T 13-10-2018 BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.8E-14 T 13-10-2018 BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.8E-14 T 13-10-2018 BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 1.8E-14 T 13-10-2018 BMD_2804 e7586ede6564b79b571336e505748d0d 303 SUPERFAMILY SSF51905 4 298 8.25E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 9.2E-11 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 166 9.2E-11 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 127 139 9.2E-11 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_2804 e7586ede6564b79b571336e505748d0d 303 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 9.2E-11 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_2804 e7586ede6564b79b571336e505748d0d 303 Gene3D G3DSA:3.50.50.60 6 291 1.3E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2804 e7586ede6564b79b571336e505748d0d 303 Gene3D G3DSA:3.50.50.60 117 228 1.3E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0541 ed920922b02d2048a3bac9e9cbb2e27b 109 SUPERFAMILY SSF54909 1 103 4.43E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_0541 ed920922b02d2048a3bac9e9cbb2e27b 109 Gene3D G3DSA:3.30.70.100 1 107 6.0E-13 T 13-10-2018 BMD_0541 ed920922b02d2048a3bac9e9cbb2e27b 109 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 72 3.5E-10 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BMD_4429 f32bebea6cb4e7d9047e56f694fafbd0 303 TIGRFAM TIGR02706 P_butyryltrans: phosphate butyryltransferase 4 299 5.2E-127 T 13-10-2018 IPR014079 Phosphate butyryltransferase GO:0016740|GO:0019605|GO:0050182 KEGG: 00650+2.3.1.19 BMD_4429 f32bebea6cb4e7d9047e56f694fafbd0 303 Gene3D G3DSA:3.40.718.10 1 301 2.3E-106 T 13-10-2018 BMD_4429 f32bebea6cb4e7d9047e56f694fafbd0 303 Pfam PF01515 Phosphate acetyl/butaryl transferase 64 296 7.1E-54 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BMD_4429 f32bebea6cb4e7d9047e56f694fafbd0 303 PIRSF PIRSF000428 1 303 3.7E-85 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BMD_4429 f32bebea6cb4e7d9047e56f694fafbd0 303 SUPERFAMILY SSF53659 4 299 3.55E-63 T 13-10-2018 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 Gene3D G3DSA:3.30.1370.10 208 302 1.1E-8 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 Hamap MF_00335 Ribonuclease Y [rny]. 5 520 25.781 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 SUPERFAMILY SSF54791 208 304 3.42E-16 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 SUPERFAMILY SSF109604 316 467 4.26E-31 T 13-10-2018 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 Pfam PF12072 Domain of unknown function (DUF3552) 6 205 9.9E-77 T 13-10-2018 IPR022711 Ribonuclease Y, N-terminal BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 SMART SM00322 208 275 1.1E-6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 TIGRFAM TIGR00277 HDIG: HDIG domain 332 409 1.5E-25 T 13-10-2018 IPR006675 HDIG domain BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 Pfam PF00013 KH domain 213 267 3.4E-6 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 8 520 1.5E-246 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 Gene3D G3DSA:1.10.3210.10 318 473 2.3E-19 T 13-10-2018 BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 SMART SM00471 332 438 3.7E-13 T 13-10-2018 IPR003607 HD/PDEase domain BMD_4105 e0df9b140b0666ac89bb0c75beac14fe 520 Pfam PF01966 HD domain 337 428 7.7E-19 T 13-10-2018 IPR006674 HD domain BMD_2490 8b5241c9620914a4d9e1f874058051ce 372 Gene3D G3DSA:3.30.565.10 241 372 1.1E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2490 8b5241c9620914a4d9e1f874058051ce 372 SUPERFAMILY SSF55781 25 170 1.09E-18 T 13-10-2018 BMD_2490 8b5241c9620914a4d9e1f874058051ce 372 SUPERFAMILY SSF55874 247 371 1.19E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2490 8b5241c9620914a4d9e1f874058051ce 372 Pfam PF13185 GAF domain 24 165 3.6E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_2490 8b5241c9620914a4d9e1f874058051ce 372 Gene3D G3DSA:3.30.450.40 3 178 1.3E-20 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_2490 8b5241c9620914a4d9e1f874058051ce 372 Pfam PF07730 Histidine kinase 182 247 5.1E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BMD_2490 8b5241c9620914a4d9e1f874058051ce 372 SMART SM00065 24 175 0.0016 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_0962 a6b9c56773f74309d8f638d35ac924c0 251 Gene3D G3DSA:3.20.20.370 2 251 5.7E-102 T 13-10-2018 BMD_0962 a6b9c56773f74309d8f638d35ac924c0 251 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 44.512 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BMD_0962 a6b9c56773f74309d8f638d35ac924c0 251 SUPERFAMILY SSF88713 3 250 1.93E-97 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_0962 a6b9c56773f74309d8f638d35ac924c0 251 Pfam PF03746 LamB/YcsF family 4 241 3.9E-101 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BMD_0733 43841be4018166e73abb34a0d2e2240a 458 SMART SM00116 212 260 6.9E-9 T 13-10-2018 IPR000644 CBS domain BMD_0733 43841be4018166e73abb34a0d2e2240a 458 SMART SM00116 148 201 0.046 T 13-10-2018 IPR000644 CBS domain BMD_0733 43841be4018166e73abb34a0d2e2240a 458 Gene3D G3DSA:1.25.60.10 4 136 2.8E-42 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily BMD_0733 43841be4018166e73abb34a0d2e2240a 458 SUPERFAMILY SSF54631 140 279 1.26E-35 T 13-10-2018 BMD_0733 43841be4018166e73abb34a0d2e2240a 458 Pfam PF01769 Divalent cation transporter 326 447 3.2E-32 T 13-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BMD_0733 43841be4018166e73abb34a0d2e2240a 458 Gene3D G3DSA:3.10.580.10 137 265 6.9E-50 T 13-10-2018 BMD_0733 43841be4018166e73abb34a0d2e2240a 458 Pfam PF00571 CBS domain 205 260 1.3E-9 T 13-10-2018 IPR000644 CBS domain BMD_0733 43841be4018166e73abb34a0d2e2240a 458 Pfam PF00571 CBS domain 141 199 7.9E-10 T 13-10-2018 IPR000644 CBS domain BMD_0733 43841be4018166e73abb34a0d2e2240a 458 TIGRFAM TIGR00400 mgtE: magnesium transporter 19 455 2.2E-136 T 13-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 BMD_0733 43841be4018166e73abb34a0d2e2240a 458 SUPERFAMILY SSF158791 13 138 2.22E-31 T 13-10-2018 BMD_0733 43841be4018166e73abb34a0d2e2240a 458 Gene3D G3DSA:1.10.357.20 279 455 4.3E-60 T 13-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain BMD_0733 43841be4018166e73abb34a0d2e2240a 458 SUPERFAMILY SSF161093 285 454 3.92E-53 T 13-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 BMD_0733 43841be4018166e73abb34a0d2e2240a 458 SMART SM00924 36 141 7.5E-27 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain BMD_0733 43841be4018166e73abb34a0d2e2240a 458 Pfam PF03448 MgtE intracellular N domain 36 138 1.5E-24 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain BMD_4100 51a3cfafa90d7877c323110d4f5cc074 288 Pfam PF12367 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 199 264 2.6E-21 T 13-10-2018 IPR032686 Pyruvate ferredoxin oxidoreductase beta subunit, C-terminal BMD_4100 51a3cfafa90d7877c323110d4f5cc074 288 SUPERFAMILY SSF52518 12 286 6.49E-75 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4100 51a3cfafa90d7877c323110d4f5cc074 288 TIGRFAM TIGR02177 PorB_KorB: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family 14 271 2.6E-94 T 13-10-2018 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate BMD_4100 51a3cfafa90d7877c323110d4f5cc074 288 Gene3D G3DSA:3.40.50.970 67 214 3.7E-28 T 13-10-2018 BMD_4100 51a3cfafa90d7877c323110d4f5cc074 288 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 48 195 5.3E-32 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 430 449 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 SUPERFAMILY SSF52518 10 181 1.13E-47 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 178 5.3E-50 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 Gene3D G3DSA:3.40.50.1220 189 361 7.1E-35 T 13-10-2018 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 Gene3D G3DSA:3.40.50.970 365 558 3.8E-62 T 13-10-2018 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 SUPERFAMILY SSF52467 191 358 1.37E-33 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 197 330 1.8E-24 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 539 3.1E-44 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 TIGRFAM TIGR02418 acolac_catab: acetolactate synthase, catabolic 13 550 3.1E-252 T 13-10-2018 IPR012782 Acetolactate synthase, catabolic GO:0000287|GO:0003984|GO:0030976|GO:0034077 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 SUPERFAMILY SSF52518 367 548 6.11E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_0790 1e49ad756ecf54003496b8d242b5fdc9 559 Gene3D G3DSA:3.40.50.970 2 188 4.0E-64 T 13-10-2018 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 Gene3D G3DSA:3.50.30.10 475 586 3.0E-36 T 13-10-2018 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 Gene3D G3DSA:2.40.33.10 71 167 4.0E-150 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 Pfam PF00391 PEP-utilising enzyme, mobile domain 505 576 1.0E-21 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 SUPERFAMILY SSF51621 1 343 9.07E-102 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 SUPERFAMILY SSF52009 466 583 9.94E-31 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 PRINTS PR01050 Pyruvate kinase family signature 217 243 8.9E-81 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 PRINTS PR01050 Pyruvate kinase family signature 313 329 8.9E-81 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 PRINTS PR01050 Pyruvate kinase family signature 186 200 8.9E-81 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 PRINTS PR01050 Pyruvate kinase family signature 244 268 8.9E-81 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 PRINTS PR01050 Pyruvate kinase family signature 294 312 8.9E-81 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 PRINTS PR01050 Pyruvate kinase family signature 59 75 8.9E-81 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 PRINTS PR01050 Pyruvate kinase family signature 269 293 8.9E-81 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 Pfam PF00224 Pyruvate kinase, barrel domain 1 343 2.2E-156 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 Gene3D G3DSA:3.40.1380.20 340 474 2.5E-46 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 Pfam PF02887 Pyruvate kinase, alpha/beta domain 358 470 3.2E-36 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 SUPERFAMILY SSF52935 323 474 1.7E-43 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 473 1.4E-188 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 Gene3D G3DSA:3.20.20.60 4 332 4.0E-150 T 13-10-2018 BMD_4760 7a41e185bb62f4791d07f4d67a08b782 586 SUPERFAMILY SSF50800 71 167 1.74E-26 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BMD_1198 d3f577fd9b665f41f423616c00b5ab61 260 Pfam PF01636 Phosphotransferase enzyme family 23 240 3.9E-24 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase BMD_1198 d3f577fd9b665f41f423616c00b5ab61 260 Gene3D G3DSA:3.90.1200.10 97 260 2.7E-17 T 13-10-2018 BMD_1198 d3f577fd9b665f41f423616c00b5ab61 260 SUPERFAMILY SSF56112 8 254 6.13E-33 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 9 331 2.2E-124 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 Gene3D G3DSA:3.30.390.10 8 357 3.9E-133 T 13-10-2018 IPR029017 Enolase-like, N-terminal BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 SUPERFAMILY SSF51604 114 359 8.52E-62 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 Gene3D G3DSA:3.20.20.120 118 346 3.9E-133 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 SMART SM00922 142 234 4.8E-19 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 1 359 44.852 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 14 125 1.5E-19 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 Pfam PF13378 Enolase C-terminal domain-like 145 353 1.8E-42 T 13-10-2018 IPR029065 Enolase C-terminal domain-like BMD_4873 13b0fc749e9999a649bf5d64808c7478 367 SUPERFAMILY SSF54826 1 126 5.63E-37 T 13-10-2018 BMD_1083 a9de22e832da2695678a71e1546478ff 212 Pfam PF07853 Protein of unknown function (DUF1648) 10 56 1.3E-14 T 13-10-2018 IPR012867 Domain of unknown function DUF1648 BMD_1083 a9de22e832da2695678a71e1546478ff 212 PIRSF PIRSF038959 1 212 5.6E-54 T 13-10-2018 IPR026272 Immunity protein SdpI BMD_1083 a9de22e832da2695678a71e1546478ff 212 Pfam PF13630 SdpI/YhfL protein family 134 202 3.3E-22 T 13-10-2018 IPR025962 SdpI/YhfL protein family BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Pfam PF01266 FAD dependent oxidoreductase 6 368 2.3E-49 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Pfam PF16350 FAD dependent oxidoreductase central domain 371 426 5.4E-15 T 13-10-2018 IPR032503 FAD dependent oxidoreductase, central domain BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Gene3D G3DSA:3.30.70.1400 499 719 7.6E-79 T 13-10-2018 BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Gene3D G3DSA:3.50.50.60 7 387 4.1E-135 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Gene3D G3DSA:3.30.1360.120 421 694 7.6E-79 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Pfam PF01571 Aminomethyltransferase folate-binding domain 429 703 2.1E-52 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 713 800 3.4E-11 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 SUPERFAMILY SSF51905 4 416 1.08E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 SUPERFAMILY SSF101790 730 803 2.45E-12 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Gene3D G3DSA:2.40.30.110 726 801 6.5E-22 T 13-10-2018 BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 Gene3D G3DSA:3.30.9.10 86 331 4.1E-135 T 13-10-2018 BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 SUPERFAMILY SSF54373 220 331 2.86E-25 T 13-10-2018 BMD_1520 1fa2557ec90c2fdb811479e7853cbea1 808 SUPERFAMILY SSF103025 421 722 5.02E-62 T 13-10-2018 BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 Gene3D G3DSA:3.30.450.20 228 332 7.1E-9 T 13-10-2018 BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 Gene3D G3DSA:3.30.565.10 338 474 6.0E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 Gene3D G3DSA:3.30.450.280 4 136 8.3E-10 T 13-10-2018 IPR038424 Signal transduction histidine kinase, N-terminal domain superfamily BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 Pfam PF07568 Histidine kinase 281 353 4.4E-20 T 13-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 SUPERFAMILY SSF55874 339 469 3.14E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 SMART SM00387 377 472 7.6E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 Pfam PF13581 Histidine kinase-like ATPase domain 376 434 1.3E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3671 c59f43be3e27be52c1b0bafcde214c8f 477 Pfam PF12282 Signal transduction histidine kinase 7 150 2.0E-27 T 13-10-2018 IPR022066 Signal transduction histidine kinase, N-terminal BMD_4193 1f3161c055947cb3521d53a88964a3db 255 Pfam PF01351 Ribonuclease HII 74 248 2.4E-38 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain BMD_4193 1f3161c055947cb3521d53a88964a3db 255 SUPERFAMILY SSF53098 61 254 6.83E-71 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_4193 1f3161c055947cb3521d53a88964a3db 255 Hamap MF_00052_B Ribonuclease HII [rnhB]. 72 250 37.868 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 BMD_4193 1f3161c055947cb3521d53a88964a3db 255 Gene3D G3DSA:3.30.420.10 48 255 1.6E-80 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_0981 4b79586ead3b903bd68bae26c5eed82e 583 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 44 579 3.4E-179 T 13-10-2018 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 BMD_0981 4b79586ead3b903bd68bae26c5eed82e 583 Gene3D G3DSA:1.20.58.1700 295 370 7.2E-123 T 13-10-2018 BMD_0981 4b79586ead3b903bd68bae26c5eed82e 583 Gene3D G3DSA:3.10.490.10 454 583 7.4E-46 T 13-10-2018 BMD_0981 4b79586ead3b903bd68bae26c5eed82e 583 Pfam PF01425 Amidase 28 430 1.6E-67 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_0981 4b79586ead3b903bd68bae26c5eed82e 583 SUPERFAMILY SSF75304 11 445 1.96E-92 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_0981 4b79586ead3b903bd68bae26c5eed82e 583 Gene3D G3DSA:3.90.1300.10 44 437 7.2E-123 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_2653 a9e9e895bd3cffce08ae50b42307f144 331 Gene3D G3DSA:3.20.20.30 1 331 5.4E-105 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2653 a9e9e895bd3cffce08ae50b42307f144 331 Pfam PF00296 Luciferase-like monooxygenase 2 299 9.4E-43 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_2653 a9e9e895bd3cffce08ae50b42307f144 331 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 3 327 7.1E-118 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 BMD_2653 a9e9e895bd3cffce08ae50b42307f144 331 SUPERFAMILY SSF51679 1 328 4.45E-75 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_5006 ed388c9bf24527ac64007f37978334c5 400 Gene3D G3DSA:1.20.1250.20 9 400 1.1E-90 T 13-10-2018 BMD_5006 ed388c9bf24527ac64007f37978334c5 400 Pfam PF07690 Major Facilitator Superfamily 20 263 9.5E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_5006 ed388c9bf24527ac64007f37978334c5 400 ProSitePatterns PS00216 Sugar transport proteins signature 1. 270 285 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_5006 ed388c9bf24527ac64007f37978334c5 400 SUPERFAMILY SSF103473 9 398 2.09E-87 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_5006 ed388c9bf24527ac64007f37978334c5 400 ProSitePatterns PS00217 Sugar transport proteins signature 2. 107 132 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 Gene3D G3DSA:3.30.950.10 118 248 4.3E-54 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 417 515 1.3E-8 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 Gene3D G3DSA:3.40.1010.10 1 117 3.1E-33 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 437 453 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 SUPERFAMILY SSF56014 398 516 1.96E-21 T 13-10-2018 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 SUPERFAMILY SSF53790 1 257 2.88E-59 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 Gene3D G3DSA:3.30.413.10 395 528 2.8E-18 T 13-10-2018 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 214 8.2E-38 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_2606 4ae9d6b6cb2b12c2bbbbe79f7bb02825 540 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 247 3.0E-102 T 13-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 251 541 1.0E-130 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 SUPERFAMILY SSF51621 251 548 2.88E-114 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 Gene3D G3DSA:1.10.274.10 24 147 5.1E-82 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 SUPERFAMILY SSF52009 126 248 9.55E-38 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 SUPERFAMILY SSF47831 24 144 5.75E-39 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 5 567 2.4E-256 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 PIRSF PIRSF000732 1 572 2.5E-228 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 Gene3D G3DSA:3.50.30.10 7 235 5.1E-82 T 13-10-2018 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 Pfam PF05524 PEP-utilising enzyme, N-terminal 6 127 5.6E-35 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 185 196 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 294 313 1.5E-32 T 13-10-2018 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 448 463 1.5E-32 T 13-10-2018 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 465 480 1.5E-32 T 13-10-2018 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 501 513 1.5E-32 T 13-10-2018 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 448 466 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 Gene3D G3DSA:3.20.20.60 236 570 6.0E-128 T 13-10-2018 BMD_1284 b93c0b629cd40b8e8ce89c5d8141b4c5 573 Pfam PF00391 PEP-utilising enzyme, mobile domain 154 226 4.9E-22 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 Gene3D G3DSA:3.40.50.2300 160 289 3.7E-89 T 13-10-2018 BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 SUPERFAMILY SSF53822 61 331 1.34E-92 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 SUPERFAMILY SSF47413 3 60 1.76E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 Gene3D G3DSA:1.10.260.40 1 60 1.6E-21 T 13-10-2018 BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 4.9E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 Gene3D G3DSA:3.40.50.2300 62 306 3.7E-89 T 13-10-2018 BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 SMART SM00354 2 72 7.1E-28 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3459 56d4004fad29015cad7e86ef8b88d6e9 349 Pfam PF13377 Periplasmic binding protein-like domain 168 329 1.4E-39 T 13-10-2018 BMD_3960 e2e2b9f6becd43a7a52c446f90048262 441 Pfam PF00041 Fibronectin type III domain 349 424 1.5E-5 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 BMD_3960 e2e2b9f6becd43a7a52c446f90048262 441 Pfam PF00149 Calcineurin-like phosphoesterase 50 243 2.1E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_3960 e2e2b9f6becd43a7a52c446f90048262 441 Gene3D G3DSA:3.60.21.10 27 319 4.1E-33 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_3960 e2e2b9f6becd43a7a52c446f90048262 441 SUPERFAMILY SSF49265 339 425 9.95E-7 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 BMD_3960 e2e2b9f6becd43a7a52c446f90048262 441 SUPERFAMILY SSF56300 44 303 1.69E-36 T 13-10-2018 BMD_3960 e2e2b9f6becd43a7a52c446f90048262 441 Gene3D G3DSA:2.60.40.10 343 437 2.2E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_2303 3d16a6d2b0875709db2bf71ff8ac1fe0 228 Gene3D G3DSA:3.40.50.150 8 228 1.1E-76 T 13-10-2018 BMD_2303 3d16a6d2b0875709db2bf71ff8ac1fe0 228 SUPERFAMILY SSF53335 39 225 2.71E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_2303 3d16a6d2b0875709db2bf71ff8ac1fe0 228 Pfam PF01596 O-methyltransferase 30 211 3.6E-44 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 275 282 4.5E-15 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 174 4.5E-15 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 4.5E-15 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 2 24 4.5E-15 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 305 1.8E-64 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 SUPERFAMILY SSF55424 321 442 1.46E-32 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 331 428 2.1E-15 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 SUPERFAMILY SSF51905 1 313 1.42E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 Gene3D G3DSA:3.50.50.60 113 438 2.6E-147 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 260 282 1.0E-20 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 1.0E-20 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 1.0E-20 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 1.0E-20 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 1.0E-20 T 13-10-2018 BMD_2191 d0553408e20ec94e7f8c45dd3ede14b7 444 Gene3D G3DSA:3.50.50.60 2 338 2.6E-147 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 SMART SM00829 8 346 0.0074 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 143 1.9E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 SUPERFAMILY SSF50129 1 180 1.89E-53 T 13-10-2018 IPR011032 GroES-like superfamily BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 69 83 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 Gene3D G3DSA:3.40.50.720 160 294 1.9E-105 T 13-10-2018 BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 Pfam PF00107 Zinc-binding dehydrogenase 183 308 2.9E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 SUPERFAMILY SSF51735 147 312 4.81E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1877 0422bbe663815e5697de7595a29f9fc0 349 Gene3D G3DSA:3.90.180.10 9 334 1.9E-105 T 13-10-2018 BMD_2585 214377c4dc764f0bf2e3c5a0c4da1ed0 195 SMART SM00947 26 182 2.5E-37 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BMD_2585 214377c4dc764f0bf2e3c5a0c4da1ed0 195 Gene3D G3DSA:3.40.1050.10 1 183 7.5E-46 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BMD_2585 214377c4dc764f0bf2e3c5a0c4da1ed0 195 SUPERFAMILY SSF53056 4 181 4.06E-40 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BMD_2585 214377c4dc764f0bf2e3c5a0c4da1ed0 195 Pfam PF00484 Carbonic anhydrase 34 176 3.8E-17 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BMD_2134 41ad050b64490e15b63d4a27617b1ef3 625 SUPERFAMILY SSF48239 296 622 2.98E-90 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid BMD_2134 41ad050b64490e15b63d4a27617b1ef3 625 SUPERFAMILY SSF48239 38 296 2.42E-44 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid BMD_2134 41ad050b64490e15b63d4a27617b1ef3 625 TIGRFAM TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases 12 621 4.5E-119 T 13-10-2018 IPR018333 Squalene cyclase GO:0016866 Reactome: R-HSA-191273|Reactome: R-HSA-2426168 BMD_2134 41ad050b64490e15b63d4a27617b1ef3 625 Gene3D G3DSA:1.50.10.20 33 303 1.7E-197 T 13-10-2018 BMD_2134 41ad050b64490e15b63d4a27617b1ef3 625 Gene3D G3DSA:1.50.10.20 16 619 1.7E-197 T 13-10-2018 BMD_2134 41ad050b64490e15b63d4a27617b1ef3 625 Pfam PF13243 Squalene-hopene cyclase C-terminal domain 305 620 6.1E-97 T 13-10-2018 IPR032696 Squalene cyclase, C-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 BMD_2134 41ad050b64490e15b63d4a27617b1ef3 625 Pfam PF13249 Squalene-hopene cyclase N-terminal domain 12 291 1.1E-63 T 13-10-2018 IPR032697 Squalene cyclase, N-terminal Reactome: R-HSA-191273|Reactome: R-HSA-2426168 BMD_0306 679cf0daacff9320bf5b65adb8be2672 337 SUPERFAMILY SSF51412 5 336 1.21E-61 T 13-10-2018 BMD_0306 679cf0daacff9320bf5b65adb8be2672 337 Pfam PF03060 Nitronate monooxygenase 7 334 7.4E-93 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 BMD_0306 679cf0daacff9320bf5b65adb8be2672 337 Gene3D G3DSA:3.20.20.70 1 337 3.7E-110 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3355 c311e1cd764f309e50c83ba3fae7dc30 297 SUPERFAMILY SSF103481 183 281 8.24E-18 T 13-10-2018 BMD_3355 c311e1cd764f309e50c83ba3fae7dc30 297 SUPERFAMILY SSF103481 40 139 1.63E-7 T 13-10-2018 BMD_3355 c311e1cd764f309e50c83ba3fae7dc30 297 Pfam PF00892 EamA-like transporter family 8 136 2.5E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3355 c311e1cd764f309e50c83ba3fae7dc30 297 Pfam PF00892 EamA-like transporter family 145 277 3.0E-25 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_4170 4ab7fbea025b22f2eaa20f7015f76c13 143 Pfam PF03748 Flagellar basal body-associated protein FliL 53 143 1.0E-11 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 BMD_1770 1bb1f5a0f96581295e8331a65c95ae33 503 Pfam PF00221 Aromatic amino acid lyase 10 468 2.8E-199 T 13-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 BMD_1770 1bb1f5a0f96581295e8331a65c95ae33 503 Gene3D G3DSA:1.10.275.10 1 196 1.3E-71 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal BMD_1770 1bb1f5a0f96581295e8331a65c95ae33 503 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 13-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 BMD_1770 1bb1f5a0f96581295e8331a65c95ae33 503 SUPERFAMILY SSF48557 3 493 2.28E-199 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_1770 1bb1f5a0f96581295e8331a65c95ae33 503 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 501 45.376 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1770 1bb1f5a0f96581295e8331a65c95ae33 503 Gene3D G3DSA:1.20.200.10 197 499 8.4E-127 T 13-10-2018 BMD_1770 1bb1f5a0f96581295e8331a65c95ae33 503 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 3 488 2.1E-216 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1236 b27bf4b22263003daacc68c2c0aacac5 212 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 11 195 1.9E-33 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal BMD_1236 b27bf4b22263003daacc68c2c0aacac5 212 Gene3D G3DSA:3.40.225.10 5 209 1.4E-42 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BMD_1236 b27bf4b22263003daacc68c2c0aacac5 212 SMART SM01007 10 198 2.0E-30 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal BMD_1236 b27bf4b22263003daacc68c2c0aacac5 212 SUPERFAMILY SSF53639 6 208 8.83E-39 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BMD_1236 b27bf4b22263003daacc68c2c0aacac5 212 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 12 202 1.2E-62 T 13-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BMD_1236 b27bf4b22263003daacc68c2c0aacac5 212 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 206 98.056 T 13-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 189 411 8.8E-82 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 Gene3D G3DSA:3.30.559.10 171 419 1.1E-99 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 SUPERFAMILY SSF52777 188 410 1.33E-83 T 13-10-2018 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 Pfam PF00364 Biotin-requiring enzyme 5 77 1.3E-22 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_4423 a78f5fa8f1497e854fa5368181492697 419 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 Pfam PF02817 e3 binding domain 112 145 2.2E-11 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 Gene3D G3DSA:2.40.50.100 2 104 1.1E-27 T 13-10-2018 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 Gene3D G3DSA:4.10.320.10 105 150 5.6E-15 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 SUPERFAMILY SSF47005 105 150 4.84E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_4423 a78f5fa8f1497e854fa5368181492697 419 SUPERFAMILY SSF51230 3 92 1.15E-26 T 13-10-2018 IPR011053 Single hybrid motif BMD_2123 924da4b3cf962714be60649b864f34e5 304 SUPERFAMILY SSF52540 54 285 9.16E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2123 924da4b3cf962714be60649b864f34e5 304 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 68 86 3.9E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_2123 924da4b3cf962714be60649b864f34e5 304 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 140 158 3.9E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_2123 924da4b3cf962714be60649b864f34e5 304 Pfam PF07728 AAA domain (dynein-related subfamily) 67 204 4.1E-27 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 BMD_2123 924da4b3cf962714be60649b864f34e5 304 Gene3D G3DSA:3.40.50.300 50 221 1.4E-32 T 13-10-2018 BMD_2123 924da4b3cf962714be60649b864f34e5 304 SMART SM00382 64 214 1.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3541 7c55356544116f5002a7c0bc49fcded3 57 Gene3D G3DSA:3.10.180.10 1 57 2.6E-13 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3541 7c55356544116f5002a7c0bc49fcded3 57 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 52 3.5E-4 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_3541 7c55356544116f5002a7c0bc49fcded3 57 SUPERFAMILY SSF54593 7 56 3.47E-9 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_4600 2ff069226c52c85695db35237b6ed961 44 Pfam PF13056 Protein of unknown function (DUF3918) 1 43 2.0E-21 T 13-10-2018 IPR025029 Protein of unknown function DUF3918 BMD_1784 4772f390bb254c89b21174b35686e1dc 134 Gene3D G3DSA:3.90.1680.10 1 134 2.0E-41 T 13-10-2018 IPR036590 SOS response associated peptidase-like BMD_1784 4772f390bb254c89b21174b35686e1dc 134 SUPERFAMILY SSF143081 3 133 8.63E-43 T 13-10-2018 IPR036590 SOS response associated peptidase-like BMD_1784 4772f390bb254c89b21174b35686e1dc 134 Pfam PF02586 SOS response associated peptidase (SRAP) 1 133 3.1E-41 T 13-10-2018 IPR003738 SOS response associated peptidase (SRAP) BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 SUPERFAMILY SSF53223 1 121 2.11E-41 T 13-10-2018 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 Gene3D G3DSA:3.40.50.720 6 257 1.4E-116 T 13-10-2018 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 75 100 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 258 266 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 120 1.1E-42 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 281 39.329 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 237 253 1.5E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 254 272 1.5E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.5E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.5E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.5E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 1.5E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 1.5E-84 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 Gene3D G3DSA:3.40.50.10860 8 274 1.4E-116 T 13-10-2018 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 123 279 1.1E-68 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BMD_2060 efaae1cb675ebb69fe28a3a47988bb38 284 SUPERFAMILY SSF51735 122 277 2.53E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 426 577 5.2E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 83 344 4.5E-45 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 598 722 3.2E-37 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Gene3D G3DSA:3.40.50.1000 321 677 0.0 T 13-10-2018 IPR023214 HAD superfamily BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Gene3D G3DSA:2.70.150.10 16 227 0.0 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 SUPERFAMILY SSF81665 2 881 8.76E-131 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 664 689 1.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 488 506 1.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 632 648 1.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 604 620 1.7E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 SUPERFAMILY SSF81653 115 223 3.53E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Pfam PF00702 haloacid dehalogenase-like hydrolase 322 646 3.5E-29 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 SUPERFAMILY SSF56784 322 736 1.6E-69 T 13-10-2018 IPR036412 HAD-like superfamily BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 324 338 8.0E-42 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 530 541 8.0E-42 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 552 562 8.0E-42 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 161 175 8.0E-42 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 656 668 8.0E-42 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 632 651 8.0E-42 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Gene3D G3DSA:3.40.1110.10 334 537 0.0 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Gene3D G3DSA:1.20.1110.10 54 877 0.0 T 13-10-2018 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 SUPERFAMILY SSF81660 331 534 1.18E-54 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 326 332 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Pfam PF00689 Cation transporting ATPase, C-terminus 716 881 1.3E-51 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 SMART SM00831 2 76 3.3E-23 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Pfam PF00690 Cation transporter/ATPase, N-terminus 3 71 2.1E-17 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 BMD_4234 5540eef48b0d1df3e6b7e41a24d731be 892 Pfam PF00122 E1-E2 ATPase 111 304 2.2E-53 T 13-10-2018 BMD_4585 2b9ca5c544f0740dd6a91eccf0fa2ef3 216 Pfam PF07423 Protein of unknown function (DUF1510) 8 215 5.9E-55 T 13-10-2018 IPR009988 Protein of unknown function DUF1510 BMD_4919 ce5aea328989f53236c26a5fb6832160 208 Pfam PF10372 Bacterial membrane-spanning protein N-terminus 8 71 1.8E-21 T 13-10-2018 IPR019457 Uncharacterised domain YojJ, N-terminal BMD_4919 ce5aea328989f53236c26a5fb6832160 208 Gene3D G3DSA:1.10.287.770 2 71 1.3E-17 T 13-10-2018 BMD_4919 ce5aea328989f53236c26a5fb6832160 208 SUPERFAMILY SSF143597 36 201 2.09E-50 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily BMD_4919 ce5aea328989f53236c26a5fb6832160 208 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 81 197 2.6E-41 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal BMD_4919 ce5aea328989f53236c26a5fb6832160 208 PIRSF PIRSF004793 11 208 4.0E-58 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 BMD_4919 ce5aea328989f53236c26a5fb6832160 208 Gene3D G3DSA:3.40.1700.10 74 203 6.6E-50 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily BMD_4919 ce5aea328989f53236c26a5fb6832160 208 Hamap MF_00838 Diadenylate cyclase [dacB]. 16 203 34.38 T 13-10-2018 IPR034693 Diadenylate cyclase CdaS GO:0004016|GO:0006171 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 ProSitePatterns PS00331 Malic enzymes signature. 156 172 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 SMART SM01274 15 148 4.2E-87 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 SUPERFAMILY SSF51735 160 401 5.09E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 Gene3D G3DSA:3.40.50.720 158 409 1.4E-90 T 13-10-2018 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 PIRSF PIRSF000106 35 406 6.8E-87 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 SUPERFAMILY SSF53223 6 158 3.38E-58 T 13-10-2018 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 Pfam PF00390 Malic enzyme, N-terminal domain 16 148 4.9E-31 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 Gene3D G3DSA:3.40.50.10380 1 157 2.3E-76 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 Pfam PF03949 Malic enzyme, NAD binding domain 162 383 1.9E-25 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 PRINTS PR00072 Malic enzyme signature 276 292 1.3E-7 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 PRINTS PR00072 Malic enzyme signature 77 99 1.3E-7 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 PRINTS PR00072 Malic enzyme signature 156 172 1.3E-7 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_4764 9760bf61c588680b0cfb5f88bb11ca48 409 SMART SM00919 160 384 8.6E-133 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 SUPERFAMILY SSF54373 248 341 2.16E-10 T 13-10-2018 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 Pfam PF01266 FAD dependent oxidoreductase 20 349 6.1E-56 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 SUPERFAMILY SSF51905 17 236 1.23E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 370 380 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 Gene3D G3DSA:3.50.50.60 17 378 6.7E-138 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 19 31 5.2E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 48 60 5.2E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 93 105 5.2E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 335 341 5.2E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 32 42 5.2E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 365 377 5.2E-30 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 Gene3D G3DSA:1.10.8.870 419 549 2.0E-44 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 401 529 7.6E-25 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 24 41 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BMD_0535 0b32247bff10124700d17ae38ca6ae97 559 Gene3D G3DSA:3.30.9.10 101 342 6.7E-138 T 13-10-2018 BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 SUPERFAMILY SSF51735 2 221 5.28E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0047 T 13-10-2018 BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 Pfam PF00106 short chain dehydrogenase 8 198 6.2E-64 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 5.0E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 5.0E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 5.0E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 5.0E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.0E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PIRSF PIRSF000126 1 238 2.9E-64 T 13-10-2018 BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 Gene3D G3DSA:3.40.50.720 1 237 5.3E-73 T 13-10-2018 BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.0E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.0E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1253 0d15b6ebe6e3bd73a986b8f4b119a7d5 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.0E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1323 9c5621c2830da48d618a33d63948764a 184 PIRSF PIRSF004749 1 184 4.0E-47 T 13-10-2018 IPR023635 Peptide deformylase BMD_1323 9c5621c2830da48d618a33d63948764a 184 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 179 1.6E-49 T 13-10-2018 IPR023635 Peptide deformylase BMD_1323 9c5621c2830da48d618a33d63948764a 184 PRINTS PR01576 Peptide deformylase signature 121 139 8.5E-29 T 13-10-2018 IPR023635 Peptide deformylase BMD_1323 9c5621c2830da48d618a33d63948764a 184 PRINTS PR01576 Peptide deformylase signature 108 119 8.5E-29 T 13-10-2018 IPR023635 Peptide deformylase BMD_1323 9c5621c2830da48d618a33d63948764a 184 PRINTS PR01576 Peptide deformylase signature 140 169 8.5E-29 T 13-10-2018 IPR023635 Peptide deformylase BMD_1323 9c5621c2830da48d618a33d63948764a 184 PRINTS PR01576 Peptide deformylase signature 47 76 8.5E-29 T 13-10-2018 IPR023635 Peptide deformylase BMD_1323 9c5621c2830da48d618a33d63948764a 184 Gene3D G3DSA:3.90.45.10 1 184 5.8E-69 T 13-10-2018 IPR036821 Peptide deformylase superfamily BMD_1323 9c5621c2830da48d618a33d63948764a 184 SUPERFAMILY SSF56420 2 177 9.68E-59 T 13-10-2018 IPR036821 Peptide deformylase superfamily BMD_1323 9c5621c2830da48d618a33d63948764a 184 Hamap MF_00163 Peptide deformylase [def]. 3 182 27.123 T 13-10-2018 IPR023635 Peptide deformylase BMD_1323 9c5621c2830da48d618a33d63948764a 184 Pfam PF01327 Polypeptide deformylase 4 171 2.1E-46 T 13-10-2018 IPR023635 Peptide deformylase BMD_5054 093560c2b310885d26b198d80f438928 244 Pfam PF00977 Histidine biosynthesis protein 5 234 1.4E-75 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 BMD_5054 093560c2b310885d26b198d80f438928 244 SUPERFAMILY SSF51366 5 240 4.64E-70 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_5054 093560c2b310885d26b198d80f438928 244 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 5 241 36.628 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 BMD_5054 093560c2b310885d26b198d80f438928 244 Gene3D G3DSA:3.20.20.70 1 243 4.0E-88 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_5054 093560c2b310885d26b198d80f438928 244 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 6 237 4.0E-84 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 BMD_5031 adda12946cab289917ba433f2a73502b 780 Gene3D G3DSA:2.40.50.140 631 742 6.7E-28 T 13-10-2018 BMD_5031 adda12946cab289917ba433f2a73502b 780 SUPERFAMILY SSF50249 57 137 8.29E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_5031 adda12946cab289917ba433f2a73502b 780 SMART SM00316 628 710 3.6E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_5031 adda12946cab289917ba433f2a73502b 780 SMART SM00955 250 580 9.5E-185 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BMD_5031 adda12946cab289917ba433f2a73502b 780 SUPERFAMILY SSF50249 210 627 7.42E-149 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_5031 adda12946cab289917ba433f2a73502b 780 Pfam PF08206 Ribonuclease B OB domain 149 203 4.5E-8 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain BMD_5031 adda12946cab289917ba433f2a73502b 780 Pfam PF08206 Ribonuclease B OB domain 76 134 4.7E-22 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain BMD_5031 adda12946cab289917ba433f2a73502b 780 TIGRFAM TIGR02063 RNase_R: ribonuclease R 10 710 8.9E-289 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BMD_5031 adda12946cab289917ba433f2a73502b 780 Pfam PF00575 S1 RNA binding domain 627 707 5.0E-18 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_5031 adda12946cab289917ba433f2a73502b 780 SMART SM00357 75 135 5.6E-12 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_5031 adda12946cab289917ba433f2a73502b 780 SMART SM00357 140 204 8.3E-8 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_5031 adda12946cab289917ba433f2a73502b 780 Pfam PF00773 RNB domain 250 578 1.6E-115 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BMD_5031 adda12946cab289917ba433f2a73502b 780 SUPERFAMILY SSF50249 128 227 3.71E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_5031 adda12946cab289917ba433f2a73502b 780 ProSitePatterns PS01175 Ribonuclease II family signature. 547 571 - T 13-10-2018 IPR022966 Ribonuclease II/R, conserved site BMD_5031 adda12946cab289917ba433f2a73502b 780 Hamap MF_01895 Ribonuclease R [rnr]. 27 710 61.79 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BMD_5031 adda12946cab289917ba433f2a73502b 780 SUPERFAMILY SSF50249 628 714 2.33E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_5031 adda12946cab289917ba433f2a73502b 780 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 62 710 3.5E-256 T 13-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 BMD_5031 adda12946cab289917ba433f2a73502b 780 Gene3D G3DSA:2.40.50.140 137 205 2.0E-9 T 13-10-2018 BMD_5031 adda12946cab289917ba433f2a73502b 780 Gene3D G3DSA:2.40.50.140 62 136 1.9E-19 T 13-10-2018 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 130 147 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 234 249 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 44 61 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 Pfam PF00248 Aldo/keto reductase family 30 266 2.0E-52 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 SUPERFAMILY SSF51430 7 275 7.07E-96 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 PIRSF PIRSF000097 2 125 1.7E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 PIRSF PIRSF000097 119 277 5.5E-53 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 Gene3D G3DSA:3.20.20.100 1 280 5.1E-127 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 PRINTS PR00069 Aldo-keto reductase signature 130 147 2.9E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 PRINTS PR00069 Aldo-keto reductase signature 164 193 2.9E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 PRINTS PR00069 Aldo-keto reductase signature 40 64 2.9E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 PRINTS PR00069 Aldo-keto reductase signature 100 118 2.9E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3715 29688ae2a23b4a5c52eba495df4cd92f 280 PRINTS PR00069 Aldo-keto reductase signature 201 225 2.9E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.1E-39 T 13-10-2018 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 1.1E-39 T 13-10-2018 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 1.1E-39 T 13-10-2018 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.1E-39 T 13-10-2018 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 1.1E-39 T 13-10-2018 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 SUPERFAMILY SSF51905 2 303 1.41E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 305 5.0E-121 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 294 7.3E-53 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 234 255 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 195 211 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 268 286 3.8E-73 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 Gene3D G3DSA:3.50.50.60 117 240 6.7E-117 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 BMD_5050 ab6fc1beaeb0167a6826c1d9d7d059d7 317 Gene3D G3DSA:3.50.50.60 8 301 6.7E-117 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0251 f14951af550c2a4f1db4df8fe37590cf 232 SUPERFAMILY SSF53067 1 103 5.18E-29 T 13-10-2018 BMD_0251 f14951af550c2a4f1db4df8fe37590cf 232 Gene3D G3DSA:3.30.420.40 3 217 3.3E-51 T 13-10-2018 BMD_0251 f14951af550c2a4f1db4df8fe37590cf 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 4 217 4.8E-54 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 BMD_0251 f14951af550c2a4f1db4df8fe37590cf 232 SUPERFAMILY SSF53067 108 215 3.63E-15 T 13-10-2018 BMD_0251 f14951af550c2a4f1db4df8fe37590cf 232 Pfam PF00814 Glycoprotease family 30 133 3.2E-32 T 13-10-2018 IPR000905 Gcp-like domain BMD_0251 f14951af550c2a4f1db4df8fe37590cf 232 Gene3D G3DSA:3.30.420.40 95 190 3.3E-51 T 13-10-2018 BMD_2010 50337eff861e63f0af2e829176517592 476 Gene3D G3DSA:1.10.287.130 229 315 1.3E-17 T 13-10-2018 BMD_2010 50337eff861e63f0af2e829176517592 476 SMART SM00388 245 313 2.3E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2010 50337eff861e63f0af2e829176517592 476 Gene3D G3DSA:3.30.565.10 320 475 3.8E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2010 50337eff861e63f0af2e829176517592 476 SMART SM00387 359 471 1.1E-39 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2010 50337eff861e63f0af2e829176517592 476 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 470 8.0E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2010 50337eff861e63f0af2e829176517592 476 SUPERFAMILY SSF47384 234 314 1.12E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2010 50337eff861e63f0af2e829176517592 476 SUPERFAMILY SSF55874 302 469 6.16E-48 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2010 50337eff861e63f0af2e829176517592 476 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 312 5.5E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2010 50337eff861e63f0af2e829176517592 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 424 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2010 50337eff861e63f0af2e829176517592 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 468 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2010 50337eff861e63f0af2e829176517592 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 410 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2010 50337eff861e63f0af2e829176517592 476 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 449 1.1E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1989 480d02949255017177304ce7c66d6731 458 Pfam PF04389 Peptidase family M28 245 425 1.1E-45 T 13-10-2018 IPR007484 Peptidase M28 BMD_1989 480d02949255017177304ce7c66d6731 458 Gene3D G3DSA:3.50.30.30 99 225 4.3E-136 T 13-10-2018 BMD_1989 480d02949255017177304ce7c66d6731 458 SUPERFAMILY SSF52025 108 213 2.22E-23 T 13-10-2018 BMD_1989 480d02949255017177304ce7c66d6731 458 Pfam PF02225 PA domain 123 207 1.6E-17 T 13-10-2018 IPR003137 PA domain BMD_1989 480d02949255017177304ce7c66d6731 458 SUPERFAMILY SSF53187 31 429 1.31E-62 T 13-10-2018 BMD_1989 480d02949255017177304ce7c66d6731 458 Gene3D G3DSA:3.40.630.10 59 422 4.3E-136 T 13-10-2018 BMD_3994 02f8fb4caef016333570c715481e1c53 207 SUPERFAMILY SSF63817 53 194 3.01E-19 T 13-10-2018 IPR023365 Sortase domain superfamily BMD_3994 02f8fb4caef016333570c715481e1c53 207 Pfam PF04203 Sortase family 61 197 3.7E-19 T 13-10-2018 IPR005754 Sortase family BMD_3994 02f8fb4caef016333570c715481e1c53 207 Gene3D G3DSA:2.40.260.10 20 206 4.8E-29 T 13-10-2018 IPR023365 Sortase domain superfamily BMD_4378 2f4f016e9e9c451ee975737cf3901955 147 Hamap MF_00637 Anti-sigma F factor [spoIIAB]. 1 141 35.821 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BMD_4378 2f4f016e9e9c451ee975737cf3901955 147 SMART SM00387 35 141 1.7E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4378 2f4f016e9e9c451ee975737cf3901955 147 Gene3D G3DSA:3.30.565.10 1 144 1.0E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4378 2f4f016e9e9c451ee975737cf3901955 147 Pfam PF13581 Histidine kinase-like ATPase domain 10 137 1.2E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4378 2f4f016e9e9c451ee975737cf3901955 147 SUPERFAMILY SSF55874 28 135 3.27E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4378 2f4f016e9e9c451ee975737cf3901955 147 TIGRFAM TIGR01925 spIIAB: anti-sigma F factor 1 138 1.7E-69 T 13-10-2018 IPR010194 Anti-sigma F factor GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0042174|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BMD_4283 66954d4677e4afc40351fb7c6e5238a2 399 Hamap MF_01539 UPF0348 protein . 2 397 41.128 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 BMD_4283 66954d4677e4afc40351fb7c6e5238a2 399 SUPERFAMILY SSF52374 10 234 9.21E-20 T 13-10-2018 BMD_4283 66954d4677e4afc40351fb7c6e5238a2 399 Gene3D G3DSA:3.40.50.620 1 241 8.7E-42 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4283 66954d4677e4afc40351fb7c6e5238a2 399 Pfam PF05636 HIGH Nucleotidyl Transferase 1 384 7.0E-142 T 13-10-2018 IPR008513 Uncharacterised protein family UPF0348 BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 Pfam PF01546 Peptidase family M20/M25/M40 98 290 3.9E-7 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 Gene3D G3DSA:3.30.70.360 184 301 8.2E-83 T 13-10-2018 BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 Pfam PF07687 Peptidase dimerisation domain 185 279 1.2E-6 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 SUPERFAMILY SSF53187 5 441 3.43E-57 T 13-10-2018 BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 Gene3D G3DSA:3.40.630.10 20 325 8.2E-83 T 13-10-2018 BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 425 2.3E-88 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 SUPERFAMILY SSF55031 187 293 4.64E-19 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_2621 7c98658ebf6e96293ebd248a45d1ad50 483 PIRSF PIRSF037227 1 474 1.7E-207 T 13-10-2018 IPR017145 Aminobenzoyl-glutamate utilization protein B BMD_3971 c77e643969dce6f4a8392433b9a78809 169 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 44 167 8.4E-66 T 13-10-2018 IPR014258 CAP domain, YkwD-like BMD_3971 c77e643969dce6f4a8392433b9a78809 169 SUPERFAMILY SSF55797 43 166 3.27E-30 T 13-10-2018 IPR035940 CAP superfamily BMD_3971 c77e643969dce6f4a8392433b9a78809 169 Pfam PF01476 LysM domain 2 37 1.1E-10 T 13-10-2018 IPR018392 LysM domain BMD_3971 c77e643969dce6f4a8392433b9a78809 169 Pfam PF00188 Cysteine-rich secretory protein family 51 166 5.1E-22 T 13-10-2018 IPR014044 CAP domain BMD_3971 c77e643969dce6f4a8392433b9a78809 169 Gene3D G3DSA:3.40.33.10 5 168 3.0E-63 T 13-10-2018 IPR035940 CAP superfamily BMD_3971 c77e643969dce6f4a8392433b9a78809 169 SUPERFAMILY SSF54106 1 37 9.42E-7 T 13-10-2018 BMD_3971 c77e643969dce6f4a8392433b9a78809 169 SMART SM00257 1 37 2.3E-5 T 13-10-2018 IPR018392 LysM domain BMD_3364 939e06101a95094873e9d9e05798f915 181 Pfam PF01381 Helix-turn-helix 11 61 6.1E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3364 939e06101a95094873e9d9e05798f915 181 SUPERFAMILY SSF47413 3 68 1.52E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3364 939e06101a95094873e9d9e05798f915 181 SUPERFAMILY SSF51182 57 181 3.12E-26 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_3364 939e06101a95094873e9d9e05798f915 181 SMART SM00530 9 64 4.7E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3364 939e06101a95094873e9d9e05798f915 181 Gene3D G3DSA:2.60.120.10 72 176 1.3E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3364 939e06101a95094873e9d9e05798f915 181 Gene3D G3DSA:1.10.260.40 3 71 1.6E-17 T 13-10-2018 BMD_3364 939e06101a95094873e9d9e05798f915 181 Pfam PF07883 Cupin domain 106 174 7.6E-16 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_0834 b909f12268e05eacc76837648951c3ae 322 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 18 301 3.7E-98 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 BMD_0834 b909f12268e05eacc76837648951c3ae 322 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 18 273 4.3E-91 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 BMD_0834 b909f12268e05eacc76837648951c3ae 322 PIRSF PIRSF006470 2 317 1.0E-113 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 BMD_0834 b909f12268e05eacc76837648951c3ae 322 Gene3D G3DSA:3.40.190.170 13 316 3.2E-95 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 Gene3D G3DSA:2.60.40.420 116 274 5.1E-40 T 13-10-2018 IPR008972 Cupredoxin BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 TIGRFAM TIGR01432 QOXA: cytochrome aa3 quinol oxidase, subunit II 19 240 5.6E-94 T 13-10-2018 IPR006332 Quinol oxidase subunit II GO:0009486|GO:0016021|GO:0016682|GO:0055114 BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 98 118 2.2E-6 T 13-10-2018 BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 191 208 2.2E-6 T 13-10-2018 BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 PRINTS PR01166 Cytochrome c oxidase subunit II signature 86 98 2.2E-6 T 13-10-2018 BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 PIRSF PIRSF000292 2 314 5.2E-102 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 SUPERFAMILY SSF49503 125 274 1.33E-40 T 13-10-2018 IPR008972 Cupredoxin BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 36 110 4.3E-10 T 13-10-2018 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 Gene3D G3DSA:1.10.287.90 28 115 8.8E-29 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3156 c4b0592027ac8bdd27d57b2e44d999cf 317 SUPERFAMILY SSF81464 19 119 2.45E-22 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_0529 49486e7124832350f4cb4e2e51f06c56 264 SUPERFAMILY SSF109998 69 245 1.24E-27 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily BMD_0529 49486e7124832350f4cb4e2e51f06c56 264 Pfam PF13624 SurA N-terminal domain 68 185 4.6E-19 T 13-10-2018 BMD_0529 49486e7124832350f4cb4e2e51f06c56 264 Gene3D G3DSA:1.10.4030.30 61 263 3.8E-27 T 13-10-2018 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 PIRSF PIRSF036979 13 313 1.3E-96 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 ProSitePatterns PS01053 Arginase family signature. 237 258 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 Gene3D G3DSA:3.40.800.10 2 314 9.0E-103 T 13-10-2018 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 TIGRFAM TIGR01230 agmatinase: agmatinase 30 307 2.8E-65 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 Pfam PF00491 Arginase family 35 305 3.3E-82 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 PRINTS PR00116 Arginase signature 121 136 1.1E-13 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 PRINTS PR00116 Arginase signature 234 263 1.1E-13 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_2214 cdffaf16009f176f1e74e742bdc250cd 327 SUPERFAMILY SSF52768 13 311 8.28E-95 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 Gene3D G3DSA:1.10.10.10 9 68 3.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 Gene3D G3DSA:1.20.120.530 70 199 7.5E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 SUPERFAMILY SSF46785 5 65 1.45E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 SMART SM00895 77 195 1.5E-17 T 13-10-2018 IPR011711 GntR, C-terminal BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 SUPERFAMILY SSF48008 73 197 2.38E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 SMART SM00345 14 68 4.8E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 66 2.2E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1133 6ca3de1068c532228f3ae75ce9389cab 208 Pfam PF07729 FCD domain 78 194 4.7E-22 T 13-10-2018 IPR011711 GntR, C-terminal BMD_1120 797d1f3ef3c8e258bd1e6e1d5371d1b9 378 Pfam PF13439 Glycosyltransferase Family 4 13 188 2.1E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BMD_1120 797d1f3ef3c8e258bd1e6e1d5371d1b9 378 Gene3D G3DSA:3.40.50.2000 189 359 2.5E-53 T 13-10-2018 BMD_1120 797d1f3ef3c8e258bd1e6e1d5371d1b9 378 SUPERFAMILY SSF53756 5 369 3.18E-66 T 13-10-2018 BMD_1120 797d1f3ef3c8e258bd1e6e1d5371d1b9 378 Pfam PF00534 Glycosyl transferases group 1 199 349 1.7E-34 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_1120 797d1f3ef3c8e258bd1e6e1d5371d1b9 378 Gene3D G3DSA:3.40.50.2000 13 368 2.5E-53 T 13-10-2018 BMD_1173 8ea8b63dde511fce559a6610c6437719 132 Gene3D G3DSA:3.10.180.10 8 127 2.9E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1173 8ea8b63dde511fce559a6610c6437719 132 SUPERFAMILY SSF54593 3 127 1.19E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1173 8ea8b63dde511fce559a6610c6437719 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 125 5.6E-17 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_1840 60deb77926ec3995cfad743607e8d158 448 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1840 60deb77926ec3995cfad743607e8d158 448 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 92 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1840 60deb77926ec3995cfad743607e8d158 448 Pfam PF07690 Major Facilitator Superfamily 246 434 8.5E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1840 60deb77926ec3995cfad743607e8d158 448 ProSitePatterns PS00216 Sugar transport proteins signature 1. 295 312 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1840 60deb77926ec3995cfad743607e8d158 448 SUPERFAMILY SSF103473 15 425 1.44E-69 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1840 60deb77926ec3995cfad743607e8d158 448 Gene3D G3DSA:1.20.1250.20 17 443 6.1E-72 T 13-10-2018 BMD_1840 60deb77926ec3995cfad743607e8d158 448 Pfam PF00083 Sugar (and other) transporter 21 232 5.1E-28 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 SUPERFAMILY SSF46589 814 878 6.8E-17 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 SUPERFAMILY SSF47323 577 829 7.66E-77 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 SUPERFAMILY SSF50677 197 347 5.62E-65 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Gene3D G3DSA:3.40.50.620 28 526 0.0 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 5.2E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 PRINTS PR00986 Valyl-tRNA synthetase signature 477 495 5.2E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 PRINTS PR00986 Valyl-tRNA synthetase signature 445 466 5.2E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 PRINTS PR00986 Valyl-tRNA synthetase signature 351 364 5.2E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 5.2E-40 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 879 16.28 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Pfam PF08264 Anticodon-binding domain of tRNA 608 755 7.1E-45 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 SUPERFAMILY SSF52374 6 575 6.07E-146 T 13-10-2018 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Gene3D G3DSA:1.10.287.380 807 879 9.5E-25 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 TIGRFAM TIGR00422 valS: valine--tRNA ligase 9 861 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Gene3D G3DSA:3.90.740.10 181 347 0.0 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Gene3D G3DSA:1.10.730.10 8 742 0.0 T 13-10-2018 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 21 565 1.4E-226 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4663 fdc2ec4d0a634a40405af92815f5cfa3 880 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 814 878 7.9E-25 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 BMD_1591 63f9d1786b686a20fa078f8f546503e0 102 SUPERFAMILY SSF143579 2 97 2.09E-31 T 13-10-2018 IPR028990 GK1464-like BMD_1591 63f9d1786b686a20fa078f8f546503e0 102 Gene3D G3DSA:3.30.70.1480 1 100 4.5E-36 T 13-10-2018 IPR028990 GK1464-like BMD_0588 d1d5105b63834e58f37e74c4632bb7ed 365 PIRSF PIRSF000525 1 365 7.7E-150 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BMD_0588 d1d5105b63834e58f37e74c4632bb7ed 365 SUPERFAMILY SSF53383 5 362 1.87E-112 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0588 d1d5105b63834e58f37e74c4632bb7ed 365 Gene3D G3DSA:3.90.1150.10 262 364 3.8E-38 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0588 d1d5105b63834e58f37e74c4632bb7ed 365 Gene3D G3DSA:3.40.640.10 20 261 9.3E-88 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0588 d1d5105b63834e58f37e74c4632bb7ed 365 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 5 364 48.647 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BMD_0588 d1d5105b63834e58f37e74c4632bb7ed 365 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 8 363 2.3E-154 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BMD_0588 d1d5105b63834e58f37e74c4632bb7ed 365 Pfam PF00266 Aminotransferase class-V 8 346 3.7E-51 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_2377 a04ccc2f3859b498946589164ce67f5f 259 SMART SM00849 35 213 4.6E-5 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2377 a04ccc2f3859b498946589164ce67f5f 259 Gene3D G3DSA:3.60.15.10 1 258 1.8E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2377 a04ccc2f3859b498946589164ce67f5f 259 Pfam PF12706 Beta-lactamase superfamily domain 48 228 4.0E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2377 a04ccc2f3859b498946589164ce67f5f 259 SUPERFAMILY SSF56281 3 258 1.7E-30 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_3366 5bb433e0aac43b4eaab05f3ee5edc9fe 104 Gene3D G3DSA:1.10.10.10 2 104 1.4E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3366 5bb433e0aac43b4eaab05f3ee5edc9fe 104 SUPERFAMILY SSF46767 3 84 1.24E-20 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 BMD_3366 5bb433e0aac43b4eaab05f3ee5edc9fe 104 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 3 83 3.3E-23 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BMD_4243 f4f01333859a630e02abf352974b117d 312 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 2 292 1.7E-95 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 128 139 4.7E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 257 280 4.7E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 245 254 4.7E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 44 63 4.7E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 Gene3D G3DSA:3.40.50.1370 6 288 5.9E-102 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 294 38.999 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 Gene3D G3DSA:3.40.50.1370 128 271 5.9E-102 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 44 51 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 147 289 4.2E-25 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 72 81 3.1E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 208 217 3.1E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 249 254 3.1E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 34 56 3.1E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 127 144 3.1E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 273 287 3.1E-32 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4243 f4f01333859a630e02abf352974b117d 312 SUPERFAMILY SSF53671 1 293 1.7E-91 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BMD_4243 f4f01333859a630e02abf352974b117d 312 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 140 1.6E-40 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 PIRSF PIRSF000521 6 114 5.0E-9 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 PIRSF PIRSF000521 154 380 6.0E-42 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 PIRSF PIRSF000521 107 144 0.0016 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 5 377 1.8E-152 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 3 380 68.416 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 Pfam PF00202 Aminotransferase class-III 10 376 3.2E-126 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 Gene3D G3DSA:3.90.1150.10 13 370 1.9E-138 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 Gene3D G3DSA:3.40.640.10 47 286 1.9E-138 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 204 241 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0681 53f2a82c72a13c88681b82e4541be910 384 SUPERFAMILY SSF53383 4 378 1.16E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2472 6aac8732e2830737e164fe05f12218e7 441 Gene3D G3DSA:1.20.1250.20 248 436 4.6E-16 T 13-10-2018 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 Pfam PF07690 Major Facilitator Superfamily 12 396 1.0E-33 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 SUPERFAMILY SSF103473 2 432 5.23E-46 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2472 6aac8732e2830737e164fe05f12218e7 441 Gene3D G3DSA:1.20.1720.10 8 247 1.0E-27 T 13-10-2018 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 PRINTS PR01036 Tetracycline resistance protein TetB signature 71 93 3.4E-22 T 13-10-2018 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 PRINTS PR01036 Tetracycline resistance protein TetB signature 132 156 3.4E-22 T 13-10-2018 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 PRINTS PR01036 Tetracycline resistance protein TetB signature 219 237 3.4E-22 T 13-10-2018 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 PRINTS PR01036 Tetracycline resistance protein TetB signature 157 181 3.4E-22 T 13-10-2018 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 PRINTS PR01036 Tetracycline resistance protein TetB signature 11 35 3.4E-22 T 13-10-2018 BMD_2472 6aac8732e2830737e164fe05f12218e7 441 PRINTS PR01036 Tetracycline resistance protein TetB signature 386 405 3.4E-22 T 13-10-2018 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 Pfam PF03129 Anticodon binding domain 470 561 1.4E-21 T 13-10-2018 IPR004154 Anticodon-binding BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 PIRSF PIRSF001535 1 565 7.5E-266 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 453 8.0E-61 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 560 2.2E-242 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 SUPERFAMILY SSF55826 218 373 2.22E-32 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 564 41.0 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 SUPERFAMILY SSF55681 9 473 3.25E-105 T 13-10-2018 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 SUPERFAMILY SSF52954 458 564 2.11E-30 T 13-10-2018 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 Gene3D G3DSA:3.40.50.800 4 548 4.5E-254 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 Gene3D G3DSA:3.30.930.10 11 460 4.5E-254 T 13-10-2018 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 Pfam PF04073 Aminoacyl-tRNA editing domain 257 372 2.7E-30 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.6E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.6E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.6E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.6E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BMD_4144 77e1d7bc84ad4cdc57cfaab69be6511c 565 Gene3D G3DSA:3.90.960.10 240 384 4.5E-254 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BMD_2172 dabe9fd2a3c8ffed2262f16f36e83c83 294 Pfam PF00892 EamA-like transporter family 148 281 1.6E-20 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2172 dabe9fd2a3c8ffed2262f16f36e83c83 294 Pfam PF00892 EamA-like transporter family 8 138 3.2E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2172 dabe9fd2a3c8ffed2262f16f36e83c83 294 SUPERFAMILY SSF103481 184 284 9.55E-14 T 13-10-2018 BMD_2172 dabe9fd2a3c8ffed2262f16f36e83c83 294 SUPERFAMILY SSF103481 40 141 1.83E-9 T 13-10-2018 BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 Pfam PF03466 LysR substrate binding domain 89 291 4.5E-48 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 SUPERFAMILY SSF53850 88 296 1.01E-41 T 13-10-2018 BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.0E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 Gene3D G3DSA:1.10.10.10 1 84 4.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 SUPERFAMILY SSF46785 1 84 1.76E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1701 22536d6c761f46bf7d0c7d1609fde75f 301 Gene3D G3DSA:3.40.190.290 90 297 8.1E-51 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 160 174 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 PIRSF PIRSF001594 3 1149 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 SUPERFAMILY SSF56059 90 340 4.42E-67 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Gene3D G3DSA:3.10.600.10 511 1063 3.3E-294 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Gene3D G3DSA:3.10.600.10 468 510 7.0E-7 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 SUPERFAMILY SSF52440 6 119 5.97E-45 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 122 328 3.4E-78 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Gene3D G3DSA:2.40.50.100 1071 1148 5.7E-24 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 SUPERFAMILY SSF89000 836 1013 1.14E-58 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Pfam PF02436 Conserved carboxylase domain 831 1030 4.0E-77 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 292 299 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Pfam PF00682 HMGL-like 536 807 2.8E-28 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 SMART SM00878 348 455 1.9E-50 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Pfam PF00289 Biotin carboxylase, N-terminal domain 7 116 4.0E-43 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Gene3D G3DSA:1.10.472.90 821 945 3.3E-294 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Gene3D G3DSA:3.20.20.70 516 820 3.3E-294 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 SUPERFAMILY SSF51569 528 839 8.79E-85 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Pfam PF00364 Biotin-requiring enzyme 1081 1147 6.4E-16 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Pfam PF02785 Biotin carboxylase C-terminal domain 348 455 6.0E-32 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Gene3D G3DSA:1.10.10.2790 946 981 3.3E-294 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 Gene3D G3DSA:3.30.470.130 2 463 3.6E-194 T 13-10-2018 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 SUPERFAMILY SSF51230 1070 1148 1.57E-20 T 13-10-2018 IPR011053 Single hybrid motif BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 SUPERFAMILY SSF51246 343 462 1.05E-37 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BMD_1350 a80ca7b6dedbfc8c379f253c744da8cb 1149 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 10 1148 0.0 T 13-10-2018 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 BMD_4399 6b147ba6d3ddd34db2a1bda65150d79e 318 SMART SM00849 18 231 1.4E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4399 6b147ba6d3ddd34db2a1bda65150d79e 318 Gene3D G3DSA:3.60.15.10 1 259 1.6E-49 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4399 6b147ba6d3ddd34db2a1bda65150d79e 318 SUPERFAMILY SSF56281 3 302 4.59E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4399 6b147ba6d3ddd34db2a1bda65150d79e 318 Pfam PF00753 Metallo-beta-lactamase superfamily 17 231 3.8E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 326 465 3.4E-44 T 13-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 13 496 2.1E-227 T 13-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 SUPERFAMILY SSF100950 228 497 7.33E-85 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 Gene3D G3DSA:3.40.1080.10 7 178 2.0E-13 T 13-10-2018 BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 Gene3D G3DSA:3.30.750.70 250 325 1.0E-6 T 13-10-2018 BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 12 171 1.2E-22 T 13-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 SUPERFAMILY SSF100950 6 224 9.9E-65 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_2706 c7ce892078d79f4ef75985c1f7b4892c 504 Gene3D G3DSA:3.40.1080.20 338 478 2.4E-42 T 13-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily BMD_1431 45b4e70c63a22c153e47787a91225feb 505 SUPERFAMILY SSF55486 9 499 2.08E-119 T 13-10-2018 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PIRSF PIRSF006615 4 505 1.4E-196 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 296 312 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 406 427 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 249 268 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 232 248 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 383 400 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 152 172 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 269 288 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 451 469 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 337 356 9.0E-80 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 Gene3D G3DSA:1.10.1370.30 3 505 5.2E-210 T 13-10-2018 BMD_1431 45b4e70c63a22c153e47787a91225feb 505 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 4 499 2.4E-214 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_4996 8887ab36a35e15cd4cfc67ab0c587f4e 255 Pfam PF06276 Ferric iron reductase FhuF-like transporter 58 203 7.3E-10 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain BMD_4996 8887ab36a35e15cd4cfc67ab0c587f4e 255 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 222 242 1.2E-4 T 13-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 SMART SM00642 167 514 9.4E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 SUPERFAMILY SSF51011 525 629 1.92E-29 T 13-10-2018 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 Gene3D G3DSA:3.20.20.80 135 524 6.7E-149 T 13-10-2018 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 PIRSF PIRSF000463 7 639 7.8E-261 T 13-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 20 627 1.0E-266 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 14 629 40.267 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 Gene3D G3DSA:2.60.40.10 8 132 5.2E-45 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_4885 a432c3470356deb7b326a38b7612fa48 653 Gene3D G3DSA:2.60.40.1180 525 630 1.3E-32 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_4885 a432c3470356deb7b326a38b7612fa48 653 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 530 628 2.3E-19 T 13-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 Pfam PF00128 Alpha amylase, catalytic domain 187 288 1.4E-11 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_4885 a432c3470356deb7b326a38b7612fa48 653 SUPERFAMILY SSF51445 91 518 2.5E-109 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_4885 a432c3470356deb7b326a38b7612fa48 653 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 36 118 1.4E-22 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BMD_4442 20c00dfed68641dbad9c50a9af3e17e9 298 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 217 229 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site BMD_4442 20c00dfed68641dbad9c50a9af3e17e9 298 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 84 100 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site BMD_4442 20c00dfed68641dbad9c50a9af3e17e9 298 Pfam PF00348 Polyprenyl synthetase 35 269 1.5E-59 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 BMD_4442 20c00dfed68641dbad9c50a9af3e17e9 298 SUPERFAMILY SSF48576 7 277 8.1E-85 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_4442 20c00dfed68641dbad9c50a9af3e17e9 298 Gene3D G3DSA:1.10.600.10 2 298 7.3E-107 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 SMART SM00849 21 216 4.5E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 Hamap MF_01491 Ribonuclease J [rnj]. 4 555 42.849 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 Gene3D G3DSA:3.60.15.10 10 435 2.0E-157 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 9 553 1.6E-187 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 Pfam PF00753 Metallo-beta-lactamase superfamily 18 173 2.1E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 PIRSF PIRSF004803 1 555 3.7E-208 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 SUPERFAMILY SSF56281 9 424 4.94E-79 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 Gene3D G3DSA:3.10.20.580 449 555 5.2E-39 T 13-10-2018 BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 Gene3D G3DSA:3.40.50.10710 208 365 2.0E-157 T 13-10-2018 BMD_4123 8f6265b90a736fce95ff7b6b3c75eb5f 555 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 362 408 3.1E-9 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 Pfam PF08279 HTH domain 13 66 7.5E-15 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 Gene3D G3DSA:3.30.1340.20 74 180 1.8E-35 T 13-10-2018 IPR035922 3H domain superfamily BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 Pfam PF02829 3H domain 81 177 5.6E-34 T 13-10-2018 IPR004173 3H domain GO:0036094 BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 ProDom PD469575 TRANSCRIPTION DNA-BINDING REGULATION TRANSCRIPTIONAL REGULATOR REPRESSOR FAMILY BIOTIN REGULATOR 3H 84 178 2.0E-32 T 13-10-2018 IPR004173 3H domain GO:0036094 BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 Gene3D G3DSA:1.10.10.10 3 68 6.7E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 SUPERFAMILY SSF75500 77 179 1.07E-35 T 13-10-2018 IPR035922 3H domain superfamily BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 PIRSF PIRSF037847 8 180 9.9E-67 T 13-10-2018 IPR026043 Transcription repressor NadR BMD_4640 53b17ec67763de7024878c0a4ebca3bd 181 SUPERFAMILY SSF46785 9 68 4.09E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4030 adfb70b7c9d69fb05a231ff47e331511 449 Pfam PF00202 Aminotransferase class-III 17 436 8.0E-104 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4030 adfb70b7c9d69fb05a231ff47e331511 449 SUPERFAMILY SSF53383 10 439 8.51E-118 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4030 adfb70b7c9d69fb05a231ff47e331511 449 Gene3D G3DSA:3.90.1150.10 17 436 3.7E-145 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4030 adfb70b7c9d69fb05a231ff47e331511 449 PIRSF PIRSF000521 14 439 1.1E-38 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4030 adfb70b7c9d69fb05a231ff47e331511 449 Gene3D G3DSA:3.40.640.10 50 327 3.7E-145 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4030 adfb70b7c9d69fb05a231ff47e331511 449 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 238 275 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 Pfam PF00375 Sodium:dicarboxylate symporter family 5 395 4.2E-119 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 SUPERFAMILY SSF118215 5 396 1.09E-113 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 290 313 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 140 162 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 287 313 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 222 241 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 70 95 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 349 369 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 187 206 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 PRINTS PR00173 Glutamate-aspartate symporter signature 322 341 1.1E-35 T 13-10-2018 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 Gene3D G3DSA:1.10.3860.10 1 405 7.8E-120 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_3311 dc47f1e8c7ac95fdc9fab29c8bb9a923 414 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 32 47 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_1616 e04765cb43639332456d5557ccb47756 222 SUPERFAMILY SSF52317 5 220 2.04E-66 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1616 e04765cb43639332456d5557ccb47756 222 Pfam PF01965 DJ-1/PfpI family 28 218 3.5E-17 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BMD_1616 e04765cb43639332456d5557ccb47756 222 Gene3D G3DSA:3.40.50.880 2 222 4.8E-75 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 SUPERFAMILY SSF55781 241 364 2.07E-7 T 13-10-2018 BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 SMART SM00065 238 373 6.0E-11 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 Pfam PF07694 5TMR of 5TMR-LYT 26 207 1.2E-59 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 576 1.3E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 Gene3D G3DSA:1.10.1760.20 78 215 5.4E-7 T 13-10-2018 BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 SUPERFAMILY SSF55874 441 576 3.41E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 SMART SM00387 468 578 1.4E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 Gene3D G3DSA:3.30.450.40 241 364 5.2E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 Gene3D G3DSA:3.30.565.10 435 581 5.8E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 Pfam PF06580 Histidine kinase 378 456 1.9E-24 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 BMD_0774 8d59e155aa9703269fa9e27f25360c80 583 Pfam PF13492 GAF domain 261 364 1.5E-6 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_0109 3806ac833d44c412ec5d20b3ae0a6b5c 233 Gene3D G3DSA:3.90.550.10 1 228 1.4E-84 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0109 3806ac833d44c412ec5d20b3ae0a6b5c 233 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 100 107 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BMD_0109 3806ac833d44c412ec5d20b3ae0a6b5c 233 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 222 4.5E-79 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BMD_0109 3806ac833d44c412ec5d20b3ae0a6b5c 233 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 2 222 42.898 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BMD_0109 3806ac833d44c412ec5d20b3ae0a6b5c 233 SUPERFAMILY SSF53448 4 223 4.06E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0109 3806ac833d44c412ec5d20b3ae0a6b5c 233 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 223 1.0E-79 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 Pfam PF00664 ABC transporter transmembrane region 25 292 2.5E-47 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 Gene3D G3DSA:1.20.1560.10 2 321 9.9E-80 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 SMART SM00382 359 546 4.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 Pfam PF00005 ABC transporter 350 500 6.2E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 SUPERFAMILY SSF52540 330 571 1.81E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 SUPERFAMILY SSF90123 12 320 9.16E-71 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_3007 ce654a8dad1afb99b0d75d1fc44c3d8c 575 Gene3D G3DSA:3.40.50.300 322 572 3.1E-90 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Gene3D G3DSA:3.30.70.100 1 73 1.2E-23 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 347 361 4.3E-28 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 645 655 4.3E-28 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 698 717 4.3E-28 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 499 513 4.3E-28 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 623 634 4.3E-28 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 721 733 4.3E-28 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 ProSitePatterns PS01047 Heavy-metal-associated domain. 80 109 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 270 785 1.0E-94 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 230 800 1.0E-202 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Pfam PF00403 Heavy-metal-associated domain 9 69 6.4E-15 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Pfam PF00403 Heavy-metal-associated domain 78 137 1.5E-13 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 501 507 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 SUPERFAMILY SSF81665 263 773 4.84E-11 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Gene3D G3DSA:3.40.1110.10 510 630 3.8E-98 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00942 Copper-transporting ATPase 1 signature 33 56 9.5E-13 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00942 Copper-transporting ATPase 1 signature 7 32 9.5E-13 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 PRINTS PR00942 Copper-transporting ATPase 1 signature 213 238 9.5E-13 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 212 801 1.5E-188 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 SUPERFAMILY SSF55008 3 72 1.83E-20 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 SUPERFAMILY SSF56784 497 798 1.32E-61 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1896 e76065edb53ed1bc70e76926047df00b 805 SUPERFAMILY SSF81653 301 397 6.28E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Pfam PF00702 haloacid dehalogenase-like hydrolase 495 712 3.2E-45 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 8 71 1.0E-11 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 75 139 6.8E-11 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 ProSitePatterns PS01047 Heavy-metal-associated domain. 12 41 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Gene3D G3DSA:3.40.50.1000 480 750 3.8E-98 T 13-10-2018 IPR023214 HAD superfamily BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Pfam PF00122 E1-E2 ATPase 298 478 1.9E-57 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Gene3D G3DSA:3.30.70.100 74 151 8.4E-24 T 13-10-2018 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 SUPERFAMILY SSF55008 75 145 3.8E-21 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BMD_1896 e76065edb53ed1bc70e76926047df00b 805 Gene3D G3DSA:2.70.150.20 290 402 2.9E-43 T 13-10-2018 BMD_1327 01ef780be086502d6399827d594e71b7 325 SUPERFAMILY SSF52518 3 192 4.24E-66 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1327 01ef780be086502d6399827d594e71b7 325 Pfam PF02779 Transketolase, pyrimidine binding domain 3 178 1.3E-40 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_1327 01ef780be086502d6399827d594e71b7 325 Pfam PF02780 Transketolase, C-terminal domain 194 315 8.2E-42 T 13-10-2018 IPR033248 Transketolase, C-terminal domain BMD_1327 01ef780be086502d6399827d594e71b7 325 Gene3D G3DSA:3.40.50.920 193 325 5.6E-48 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_1327 01ef780be086502d6399827d594e71b7 325 SMART SM00861 4 179 4.9E-63 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_1327 01ef780be086502d6399827d594e71b7 325 Gene3D G3DSA:3.40.50.970 1 192 3.1E-79 T 13-10-2018 BMD_1327 01ef780be086502d6399827d594e71b7 325 SUPERFAMILY SSF52922 189 325 4.32E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_1506 7fccbe046b978a8e57dbffcf25bfc000 55 Pfam PF14151 YfhD-like protein 4 54 3.6E-17 T 13-10-2018 IPR025435 YfhD-like protein BMD_1506 7fccbe046b978a8e57dbffcf25bfc000 55 ProDom PD053407 YFHD 7 55 3.0E-6 T 13-10-2018 BMD_0464 74a058c31af3130ec5b56f0ec52964b6 270 SUPERFAMILY SSF161098 4 270 9.35E-67 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0464 74a058c31af3130ec5b56f0ec52964b6 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 264 6.8E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0464 74a058c31af3130ec5b56f0ec52964b6 270 Gene3D G3DSA:1.10.3720.10 2 262 2.1E-62 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 Gene3D G3DSA:3.40.50.720 1 237 3.4E-61 T 13-10-2018 BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 235 5.4E-50 T 13-10-2018 BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 5.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 5.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 5.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.8E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 220 1.8E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.8E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.8E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.8E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.8E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2143 a8ee5556f738ce4ad9e048b9acf6e132 239 SUPERFAMILY SSF51735 2 238 4.33E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 SMART SM00463 709 787 8.4E-24 T 13-10-2018 IPR002625 Smr domain BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 SMART SM00533 9 316 1.4E-28 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 Gene3D G3DSA:3.30.1370.110 700 787 1.7E-23 T 13-10-2018 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 411 427 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 PIRSF PIRSF005814 1 787 1.6E-279 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 TIGRFAM TIGR01069 mutS2: MutS2 family protein 4 786 9.6E-279 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 SUPERFAMILY SSF160443 710 786 2.88E-9 T 13-10-2018 IPR036063 Smr domain superfamily BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 SUPERFAMILY SSF48334 25 289 5.36E-27 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 SMART SM00534 329 514 7.2E-76 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 Pfam PF01713 Smr domain 712 787 5.0E-20 T 13-10-2018 IPR002625 Smr domain BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 2 786 22.39 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 Gene3D G3DSA:3.40.50.300 294 649 3.1E-82 T 13-10-2018 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 Gene3D G3DSA:1.10.1420.10 135 260 3.5E-7 T 13-10-2018 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 Pfam PF00488 MutS domain V 332 511 2.8E-33 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 Gene3D G3DSA:1.10.1420.10 67 281 3.5E-7 T 13-10-2018 BMD_4723 a7552d2cb3d85e8cffd9bcd294e370d0 787 SUPERFAMILY SSF52540 294 515 3.42E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1293 2ac7e86e3a7f11a3becc20f15c892461 73 Gene3D G3DSA:4.10.810.10 21 73 1.8E-12 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_1293 2ac7e86e3a7f11a3becc20f15c892461 73 SMART SM00914 31 67 1.9E-8 T 13-10-2018 IPR014957 IDEAL domain BMD_1293 2ac7e86e3a7f11a3becc20f15c892461 73 Pfam PF08858 IDEAL domain 37 67 1.9E-11 T 13-10-2018 IPR014957 IDEAL domain BMD_3449 c27c2f3204b3a02b622cab424b794363 160 Pfam PF11188 Protein of unknown function (DUF2975) 43 147 1.2E-17 T 13-10-2018 IPR021354 Protein of unknown function DUF2975 BMD_4730 17cfffe7894da8bf7491b98d6e02ac62 252 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 32 96 2.1E-12 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BMD_4730 17cfffe7894da8bf7491b98d6e02ac62 252 Pfam PF00588 SpoU rRNA Methylase family 109 247 4.7E-38 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BMD_4730 17cfffe7894da8bf7491b98d6e02ac62 252 SUPERFAMILY SSF55315 2 96 1.88E-24 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_4730 17cfffe7894da8bf7491b98d6e02ac62 252 SUPERFAMILY SSF75217 93 249 2.09E-42 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases BMD_4730 17cfffe7894da8bf7491b98d6e02ac62 252 SMART SM00967 31 100 9.6E-14 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BMD_4730 17cfffe7894da8bf7491b98d6e02ac62 252 Gene3D G3DSA:3.40.1280.10 98 251 3.1E-53 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BMD_4730 17cfffe7894da8bf7491b98d6e02ac62 252 Gene3D G3DSA:3.30.1330.30 2 97 7.2E-26 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_3567 b36dbe0a0d46b320eea02c193ad898cd 480 Pfam PF00324 Amino acid permease 27 438 3.2E-88 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_3567 b36dbe0a0d46b320eea02c193ad898cd 480 ProSitePatterns PS00218 Amino acid permeases signature. 51 81 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_3567 b36dbe0a0d46b320eea02c193ad898cd 480 PIRSF PIRSF006060 5 479 3.5E-73 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3567 b36dbe0a0d46b320eea02c193ad898cd 480 Gene3D G3DSA:1.20.1740.10 17 477 8.1E-64 T 13-10-2018 BMD_0544 b807e30d77603d67778329d7a030d19d 314 SUPERFAMILY SSF53590 1 309 8.24E-80 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like BMD_0544 b807e30d77603d67778329d7a030d19d 314 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 301 5.0E-45 T 13-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BMD_0544 b807e30d77603d67778329d7a030d19d 314 Gene3D G3DSA:3.90.245.10 3 313 8.0E-101 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like BMD_3566 3c0baa4a981f9f21708de571a7e08cb4 428 SUPERFAMILY SSF53383 10 414 6.43E-80 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3566 3c0baa4a981f9f21708de571a7e08cb4 428 Gene3D G3DSA:3.40.640.10 47 316 1.6E-145 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3566 3c0baa4a981f9f21708de571a7e08cb4 428 Pfam PF00266 Aminotransferase class-V 80 377 3.0E-22 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_3566 3c0baa4a981f9f21708de571a7e08cb4 428 PIRSF PIRSF038800 5 420 8.0E-155 T 13-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 BMD_3566 3c0baa4a981f9f21708de571a7e08cb4 428 Gene3D G3DSA:3.90.1150.10 16 412 1.6E-145 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3566 3c0baa4a981f9f21708de571a7e08cb4 428 TIGRFAM TIGR01814 kynureninase: kynureninase 13 412 2.4E-122 T 13-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 BMD_3566 3c0baa4a981f9f21708de571a7e08cb4 428 Hamap MF_01970 Kynureninase [kynU]. 5 412 40.366 T 13-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 BMD_3180 cd2eede370cea41b240b390eb0c1d391 332 Gene3D G3DSA:3.90.180.10 13 328 4.5E-137 T 13-10-2018 BMD_3180 cd2eede370cea41b240b390eb0c1d391 332 Gene3D G3DSA:3.40.50.720 124 300 4.5E-137 T 13-10-2018 BMD_3180 cd2eede370cea41b240b390eb0c1d391 332 Pfam PF00107 Zinc-binding dehydrogenase 155 288 5.7E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_3180 cd2eede370cea41b240b390eb0c1d391 332 SMART SM00829 15 328 7.6E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_3180 cd2eede370cea41b240b390eb0c1d391 332 Pfam PF16884 N-terminal domain of oxidoreductase 4 110 2.4E-40 T 13-10-2018 BMD_3180 cd2eede370cea41b240b390eb0c1d391 332 SUPERFAMILY SSF51735 121 295 2.22E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3180 cd2eede370cea41b240b390eb0c1d391 332 SUPERFAMILY SSF50129 2 140 1.03E-40 T 13-10-2018 IPR011032 GroES-like superfamily BMD_1141 56ef417c30fcc5500e1b16ef3371726e 108 SUPERFAMILY SSF50022 7 107 5.37E-31 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_1141 56ef417c30fcc5500e1b16ef3371726e 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 10 102 2.7E-14 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 BMD_1141 56ef417c30fcc5500e1b16ef3371726e 108 Gene3D G3DSA:2.102.10.10 4 108 8.7E-27 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_1141 56ef417c30fcc5500e1b16ef3371726e 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 7 104 1.6E-29 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 BMD_4447 5b96249984cabaff830f2fcf814738de 450 Gene3D G3DSA:3.30.1490.20 131 202 2.2E-161 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_4447 5b96249984cabaff830f2fcf814738de 450 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4447 5b96249984cabaff830f2fcf814738de 450 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 3.2E-46 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_4447 5b96249984cabaff830f2fcf814738de 450 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 2.9E-84 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4447 5b96249984cabaff830f2fcf814738de 450 Gene3D G3DSA:3.40.50.20 2 85 2.8E-37 T 13-10-2018 BMD_4447 5b96249984cabaff830f2fcf814738de 450 SUPERFAMILY SSF52440 1 113 1.15E-49 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_4447 5b96249984cabaff830f2fcf814738de 450 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 449 3.7E-241 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 BMD_4447 5b96249984cabaff830f2fcf814738de 450 SMART SM00878 337 443 3.1E-71 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_4447 5b96249984cabaff830f2fcf814738de 450 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 3.6E-45 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_4447 5b96249984cabaff830f2fcf814738de 450 SUPERFAMILY SSF56059 83 349 6.72E-73 T 13-10-2018 BMD_4447 5b96249984cabaff830f2fcf814738de 450 SUPERFAMILY SSF51246 332 443 1.31E-47 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BMD_4447 5b96249984cabaff830f2fcf814738de 450 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4447 5b96249984cabaff830f2fcf814738de 450 Gene3D G3DSA:3.30.470.20 87 443 2.2E-161 T 13-10-2018 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 Gene3D G3DSA:1.20.1250.20 270 507 1.2E-25 T 13-10-2018 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 SUPERFAMILY SSF103473 15 204 7.19E-42 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 ProSitePatterns PS00217 Sugar transport proteins signature 2. 374 399 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 SUPERFAMILY SSF103473 207 502 1.02E-35 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 497 7.6E-76 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 Pfam PF07690 Major Facilitator Superfamily 25 417 1.5E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 Gene3D G3DSA:1.20.1720.10 20 205 5.8E-48 T 13-10-2018 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 PRINTS PR01036 Tetracycline resistance protein TetB signature 24 48 1.3E-7 T 13-10-2018 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 PRINTS PR01036 Tetracycline resistance protein TetB signature 346 366 1.3E-7 T 13-10-2018 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 PRINTS PR01036 Tetracycline resistance protein TetB signature 114 134 1.3E-7 T 13-10-2018 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 PRINTS PR01036 Tetracycline resistance protein TetB signature 144 168 1.3E-7 T 13-10-2018 BMD_3410 7e6a6a7046f1e46e152b6b1875ba10c7 508 PRINTS PR01036 Tetracycline resistance protein TetB signature 209 227 1.3E-7 T 13-10-2018 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 3.9E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 3.9E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 Gene3D G3DSA:3.40.50.2300 161 326 3.1E-78 T 13-10-2018 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.6E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 Gene3D G3DSA:3.40.50.2300 63 321 3.1E-78 T 13-10-2018 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 SMART SM00354 2 72 1.2E-35 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 SUPERFAMILY SSF47413 2 60 1.96E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 SUPERFAMILY SSF53822 62 330 6.28E-78 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 Gene3D G3DSA:1.10.260.40 1 60 3.7E-22 T 13-10-2018 BMD_0489 bb9dc59a6a4ec85873ed4cad377f9c1c 332 Pfam PF13377 Periplasmic binding protein-like domain 171 329 1.7E-33 T 13-10-2018 BMD_4581 891c2e6e2bad179fb0ff8e6dbe67b91a 307 Gene3D G3DSA:3.40.50.1100 10 299 3.9E-113 T 13-10-2018 BMD_4581 891c2e6e2bad179fb0ff8e6dbe67b91a 307 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BMD_4581 891c2e6e2bad179fb0ff8e6dbe67b91a 307 SUPERFAMILY SSF53686 1 301 1.11E-89 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_4581 891c2e6e2bad179fb0ff8e6dbe67b91a 307 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 292 3.8E-63 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_4581 891c2e6e2bad179fb0ff8e6dbe67b91a 307 Gene3D G3DSA:3.40.50.1100 45 146 3.9E-113 T 13-10-2018 BMD_4321 8471659a64fa4d2973c0034e269188b0 492 PIRSF PIRSF007466 1 492 2.1E-269 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 BMD_4321 8471659a64fa4d2973c0034e269188b0 492 TIGRFAM TIGR02836 spore_IV_A: stage IV sporulation protein A 1 492 3.4E-266 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 BMD_4321 8471659a64fa4d2973c0034e269188b0 492 SUPERFAMILY SSF52540 19 225 3.08E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4321 8471659a64fa4d2973c0034e269188b0 492 Pfam PF09547 Stage IV sporulation protein A (spore_IV_A) 2 492 3.0E-228 T 13-10-2018 IPR014201 Sporulation stage IV, protein A GO:0005524|GO:0016887|GO:0043934 KEGG: 00230+3.6.1.3 BMD_4321 8471659a64fa4d2973c0034e269188b0 492 Gene3D G3DSA:3.40.50.300 12 236 6.8E-11 T 13-10-2018 BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 301 1.6E-17 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 Gene3D G3DSA:3.40.366.10 4 280 6.3E-72 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 Pfam PF00698 Acyl transferase domain 5 293 1.4E-27 T 13-10-2018 IPR014043 Acyl transferase BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 PIRSF PIRSF000446 1 304 3.3E-72 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 SUPERFAMILY SSF52151 3 290 2.14E-53 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 TIGRFAM TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit 3 300 1.9E-89 T 13-10-2018 IPR017554 Malonate decarboxylase, McdH subunit BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 Gene3D G3DSA:3.30.70.250 121 191 6.3E-72 T 13-10-2018 BMD_0796 4406bf731039c2fb3f9dce34b90b80b8 308 SUPERFAMILY SSF55048 122 190 3.66E-11 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BMD_5145 8c5bc1c3273df7671eb7bc322c7eb5ba 209 Gene3D G3DSA:3.40.50.2020 1 209 1.2E-84 T 13-10-2018 BMD_5145 8c5bc1c3273df7671eb7bc322c7eb5ba 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 48.724 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 BMD_5145 8c5bc1c3273df7671eb7bc322c7eb5ba 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 209 1.8E-93 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 BMD_5145 8c5bc1c3273df7671eb7bc322c7eb5ba 209 Pfam PF14681 Uracil phosphoribosyltransferase 6 208 6.9E-76 T 13-10-2018 BMD_5145 8c5bc1c3273df7671eb7bc322c7eb5ba 209 SUPERFAMILY SSF53271 4 207 3.28E-75 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_2026 c395aecf42b91d915472276cc2b1169d 440 Pfam PF00296 Luciferase-like monooxygenase 22 383 1.5E-63 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_2026 c395aecf42b91d915472276cc2b1169d 440 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 424 1.5E-169 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_2026 c395aecf42b91d915472276cc2b1169d 440 Gene3D G3DSA:3.20.20.30 1 440 2.5E-162 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2026 c395aecf42b91d915472276cc2b1169d 440 SUPERFAMILY SSF51679 4 430 4.71E-134 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2026 c395aecf42b91d915472276cc2b1169d 440 PIRSF PIRSF000337 2 439 4.5E-149 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Gene3D G3DSA:3.30.1360.40 235 331 7.5E-196 T 13-10-2018 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 SMART SM00434 10 463 5.7E-259 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Gene3D G3DSA:2.120.10.90 499 808 1.8E-100 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 SUPERFAMILY SSF101904 499 805 1.24E-91 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 SUPERFAMILY SSF56719 30 485 8.5E-168 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 31 470 1.0E-149 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Gene3D G3DSA:1.10.268.10 368 464 7.5E-196 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 507 525 0.13 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 605 649 1.0E-6 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 709 753 0.0011 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 655 696 3.1E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 550 599 5.1E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 TIGRFAM TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit 8 748 0.0 T 13-10-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 803 5.7E-268 T 13-10-2018 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Gene3D G3DSA:3.90.199.10 32 485 7.5E-196 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 BMD_2533 54c9a22094af7ae655aeeb1681fa10a0 808 Hamap MF_00937 DNA topoisomerase 4 subunit A [parC]. 6 806 33.676 T 13-10-2018 IPR005741 DNA topoisomerase IV subunit A, Gram-positive GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 Gene3D G3DSA:3.40.50.720 1 252 4.2E-80 T 13-10-2018 BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 4.5E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 4.5E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 4.5E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 4.5E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 4.5E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 4.5E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 SUPERFAMILY SSF51735 2 249 3.23E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.5E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.5E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.5E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1303 4deb4fc6ecd2134ab7e1499a744c02a8 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 1.4E-58 T 13-10-2018 BMD_1588 7f5779927f5b7bcdb998323b479b5b46 283 Gene3D G3DSA:3.40.190.10 34 258 3.8E-90 T 13-10-2018 BMD_1588 7f5779927f5b7bcdb998323b479b5b46 283 SUPERFAMILY SSF53850 32 278 5.01E-77 T 13-10-2018 BMD_1588 7f5779927f5b7bcdb998323b479b5b46 283 PIRSF PIRSF002854 1 268 4.3E-92 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_1588 7f5779927f5b7bcdb998323b479b5b46 283 Pfam PF03180 NLPA lipoprotein 33 267 1.5E-84 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_1588 7f5779927f5b7bcdb998323b479b5b46 283 Gene3D G3DSA:3.40.190.10 110 219 3.8E-90 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 SUPERFAMILY SSF54862 134 218 2.3E-18 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 SMART SM00926 261 315 1.9E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 SUPERFAMILY SSF50692 797 936 5.65E-35 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Gene3D G3DSA:2.20.25.90 261 316 8.1E-19 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 PIRSF PIRSF036643 1 968 0.0 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 262 315 4.3E-18 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Pfam PF01568 Molydopterin dinucleotide binding domain 824 931 3.5E-22 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Gene3D G3DSA:3.30.70.20 129 212 5.2E-21 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Gene3D G3DSA:3.40.50.740 323 781 3.8E-160 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 266 934 9.1E-244 T 13-10-2018 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.17.1.9|KEGG: 00680+1.17.1.9|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696|MetaCyc: PWY-7985 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 87 124 6.9E-11 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Pfam PF12838 4Fe-4S dicluster domain 150 208 3.0E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Pfam PF00384 Molybdopterin oxidoreductase 318 741 2.5E-86 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 194 205 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 SUPERFAMILY SSF53706 255 785 3.14E-189 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Gene3D G3DSA:2.40.40.20 816 942 2.1E-29 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 SMART SM00929 85 126 2.2E-13 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 SUPERFAMILY SSF54292 6 128 6.77E-30 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Gene3D G3DSA:3.10.20.740 5 127 2.2E-29 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 6 78 2.3E-14 T 13-10-2018 BMD_5026 03ed9b8d4f66f86d0b25fdd68df695c6 979 Gene3D G3DSA:3.40.228.10 396 595 3.8E-160 T 13-10-2018 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 Pfam PF17284 Spermidine synthase tetramerisation domain 3 55 3.5E-20 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 TIGRFAM TIGR00417 speE: spermidine synthase 4 269 7.8E-122 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 Gene3D G3DSA:2.30.140.10 1 52 3.3E-25 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 3 275 42.055 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 Gene3D G3DSA:3.40.50.150 53 274 4.3E-77 T 13-10-2018 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 79 92 - T 13-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 Pfam PF01564 Spermine/spermidine synthase domain 58 236 5.1E-70 T 13-10-2018 BMD_5178 56b061c42ab7e43b9dd7a99a5581ee37 275 SUPERFAMILY SSF53335 3 274 4.46E-87 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 ProSitePatterns PS00216 Sugar transport proteins signature 1. 321 338 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 Gene3D G3DSA:1.20.1250.20 2 242 2.2E-63 T 13-10-2018 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 SUPERFAMILY SSF103473 12 458 7.06E-62 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 Pfam PF00083 Sugar (and other) transporter 14 460 5.7E-124 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 Gene3D G3DSA:1.20.1250.20 247 470 7.0E-66 T 13-10-2018 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 ProSitePatterns PS00217 Sugar transport proteins signature 2. 125 150 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 4 456 6.4E-127 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 PRINTS PR00171 Sugar transporter signature 21 31 4.5E-26 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 PRINTS PR00171 Sugar transporter signature 277 287 4.5E-26 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 PRINTS PR00171 Sugar transporter signature 385 397 4.5E-26 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 PRINTS PR00171 Sugar transporter signature 362 383 4.5E-26 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_1860 c1d48b28f40884bb8b1907d9c8816b2d 473 PRINTS PR00171 Sugar transporter signature 120 139 4.5E-26 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 371 8.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 8.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 352 8.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 390 8.4E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 SUPERFAMILY SSF55785 54 166 8.94E-22 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 Gene3D G3DSA:1.10.287.130 181 239 1.4E-13 T 13-10-2018 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 SUPERFAMILY SSF55874 243 394 2.49E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 Pfam PF00512 His Kinase A (phospho-acceptor) domain 180 241 6.3E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 SMART SM00388 178 243 1.1E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 SMART SM00091 49 115 2.9E-7 T 13-10-2018 IPR000014 PAS domain BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 SUPERFAMILY SSF47384 171 241 2.55E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 Gene3D G3DSA:3.30.450.20 46 177 2.4E-22 T 13-10-2018 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 SMART SM00387 286 393 2.9E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 Pfam PF00989 PAS fold 52 160 4.0E-12 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 SMART SM00086 121 163 1.7E-4 T 13-10-2018 IPR001610 PAC motif BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 287 392 3.2E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 47 169 7.2E-17 T 13-10-2018 IPR000014 PAS domain BMD_4058 f0f3ed9d29e88f213db7ea3ed1cd678d 401 Gene3D G3DSA:3.30.565.10 245 397 8.0E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 Gene3D G3DSA:3.30.160.20 186 281 1.0E-98 T 13-10-2018 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 205 221 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 Gene3D G3DSA:1.20.58.410 1 76 1.1E-17 T 13-10-2018 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 SMART SM00937 45 155 2.7E-58 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 Gene3D G3DSA:3.30.70.1660 90 319 1.0E-98 T 13-10-2018 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 326 37.579 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 Pfam PF00472 RF-1 domain 188 298 4.1E-43 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 SUPERFAMILY SSF75620 1 324 3.92E-136 T 13-10-2018 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 324 3.8E-166 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 BMD_5083 7f161e06a827478b4d5d206ca45a5744 326 Pfam PF03462 PCRF domain 1 179 4.8E-60 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 BMD_4782 b7227d76c216fecea728296a68d9aff9 154 Pfam PF09579 Sporulation protein YtfJ (Spore_YtfJ) 31 124 3.0E-28 T 13-10-2018 IPR014229 Sporulation protein YtfJ BMD_4782 b7227d76c216fecea728296a68d9aff9 154 TIGRFAM TIGR02874 spore_ytfJ: sporulation protein YtfJ 3 134 2.3E-54 T 13-10-2018 IPR014229 Sporulation protein YtfJ BMD_4782 b7227d76c216fecea728296a68d9aff9 154 PIRSF PIRSF021377 1 153 1.3E-63 T 13-10-2018 IPR014229 Sporulation protein YtfJ BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 146 688 5.9E-162 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 SUPERFAMILY SSF81653 200 295 3.01E-23 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 522 2.2E-22 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 388 402 2.2E-22 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 544 2.2E-22 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 246 260 2.2E-22 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 605 2.2E-22 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 610 622 2.2E-22 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 390 396 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 Pfam PF00702 haloacid dehalogenase-like hydrolase 385 599 3.1E-34 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 168 670 1.9E-68 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 Pfam PF00122 E1-E2 ATPase 201 368 3.5E-41 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 Gene3D G3DSA:2.70.150.20 190 301 2.1E-32 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 SUPERFAMILY SSF81665 151 667 1.57E-7 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 Gene3D G3DSA:3.40.1110.10 399 518 2.3E-76 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 146 690 8.9E-119 T 13-10-2018 BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 Gene3D G3DSA:3.40.50.1000 369 639 2.3E-76 T 13-10-2018 IPR023214 HAD superfamily BMD_1817 5914fe973ea7ade0bd9202b800c0e21e 705 SUPERFAMILY SSF56784 386 686 6.05E-45 T 13-10-2018 IPR036412 HAD-like superfamily BMD_0975 5c9da8916c18356fd6359169b9f0aa64 298 Gene3D G3DSA:3.40.50.10860 15 282 7.3E-91 T 13-10-2018 BMD_0975 5c9da8916c18356fd6359169b9f0aa64 298 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 11 293 32.485 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BMD_0975 5c9da8916c18356fd6359169b9f0aa64 298 SUPERFAMILY SSF53223 7 110 5.24E-33 T 13-10-2018 BMD_0975 5c9da8916c18356fd6359169b9f0aa64 298 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 13 292 9.5E-63 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BMD_0975 5c9da8916c18356fd6359169b9f0aa64 298 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 16 98 7.6E-29 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BMD_0975 5c9da8916c18356fd6359169b9f0aa64 298 SUPERFAMILY SSF51735 111 292 1.21E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0975 5c9da8916c18356fd6359169b9f0aa64 298 Gene3D G3DSA:3.40.50.720 112 265 7.3E-91 T 13-10-2018 BMD_3607 993616e22bc37c04d7734546f5532e14 312 SUPERFAMILY SSF48179 180 303 1.84E-28 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_3607 993616e22bc37c04d7734546f5532e14 312 SUPERFAMILY SSF51735 1 179 4.47E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3607 993616e22bc37c04d7734546f5532e14 312 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 303 3.9E-70 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 BMD_3607 993616e22bc37c04d7734546f5532e14 312 Gene3D G3DSA:3.40.50.720 1 177 5.4E-50 T 13-10-2018 BMD_3607 993616e22bc37c04d7734546f5532e14 312 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 147 1.3E-36 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain BMD_3607 993616e22bc37c04d7734546f5532e14 312 Gene3D G3DSA:1.10.1040.10 180 307 5.0E-34 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_3607 993616e22bc37c04d7734546f5532e14 312 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 180 303 1.4E-30 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain BMD_1210 4830ed63343f4af111bee61fda0c058d 65 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 38 52 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_1210 4830ed63343f4af111bee61fda0c058d 65 Gene3D G3DSA:1.10.8.910 5 65 8.2E-26 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_1210 4830ed63343f4af111bee61fda0c058d 65 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 20 29 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_1210 4830ed63343f4af111bee61fda0c058d 65 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 5 59 6.0E-19 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 642 56.335 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 SMART SM00493 3 103 1.1E-32 T 13-10-2018 IPR006171 TOPRIM domain BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 616 655 3.0E-13 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 576 613 6.3E-17 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 8.7E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 473 487 8.7E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 293 302 8.7E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 370 386 8.7E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 8.7E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 SMART SM00437 242 510 6.8E-126 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 SMART SM00436 104 192 5.3E-50 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Gene3D G3DSA:2.70.20.10 184 457 8.0E-169 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 SUPERFAMILY SSF57783 576 613 5.27E-14 T 13-10-2018 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Gene3D G3DSA:3.40.50.140 1 134 1.1E-53 T 13-10-2018 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 279 302 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Pfam PF01751 Toprim domain 5 113 2.4E-29 T 13-10-2018 IPR006171 TOPRIM domain BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Gene3D G3DSA:1.10.290.10 250 385 8.0E-169 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Pfam PF01131 DNA topoisomerase 128 548 5.1E-136 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 611 2.7E-269 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Pfam PF02150 RNA polymerases M/15 Kd subunit 660 691 1.2E-6 T 13-10-2018 IPR001529 DNA-directed RNA polymerase, M/15kDa subunit GO:0006351 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Gene3D G3DSA:3.30.65.10 559 617 6.8E-15 T 13-10-2018 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 Gene3D G3DSA:1.10.460.10 135 550 8.0E-169 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BMD_4189 ce91dd075c87545bfe01e8c73ae498c1 691 SUPERFAMILY SSF56712 4 589 1.18E-199 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain BMD_2092 550f811def5c2847ab2d9d4c302b554b 495 Pfam PF01593 Flavin containing amine oxidoreductase 12 482 1.7E-15 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_2092 550f811def5c2847ab2d9d4c302b554b 495 Gene3D G3DSA:3.50.50.60 186 319 8.6E-9 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2092 550f811def5c2847ab2d9d4c302b554b 495 Gene3D G3DSA:3.50.50.60 3 96 5.8E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2092 550f811def5c2847ab2d9d4c302b554b 495 SUPERFAMILY SSF51905 1 484 2.38E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2244 87ce6c270ba8241027c25f6982027839 368 Pfam PF01472 PUA domain 281 341 2.9E-9 T 13-10-2018 IPR002478 PUA domain GO:0003723 BMD_2244 87ce6c270ba8241027c25f6982027839 368 Gene3D G3DSA:3.40.1160.10 2 265 2.1E-90 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_2244 87ce6c270ba8241027c25f6982027839 368 Hamap MF_00456 Glutamate 5-kinase [proB]. 7 261 38.073 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 Pfam PF00696 Amino acid kinase family 7 235 8.3E-48 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 Gene3D G3DSA:2.30.130.10 270 348 5.8E-15 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 BMD_2244 87ce6c270ba8241027c25f6982027839 368 TIGRFAM TIGR01027 proB: glutamate 5-kinase 7 341 2.2E-122 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 ProSitePatterns PS00902 Glutamate 5-kinase signature. 209 226 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 PIRSF PIRSF000729 3 350 4.6E-131 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BMD_2244 87ce6c270ba8241027c25f6982027839 368 SUPERFAMILY SSF53633 7 258 1.06E-70 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_2244 87ce6c270ba8241027c25f6982027839 368 SUPERFAMILY SSF88697 281 341 2.55E-7 T 13-10-2018 IPR015947 PUA-like superfamily BMD_2244 87ce6c270ba8241027c25f6982027839 368 PRINTS PR00474 Glutamate 5-kinase family signature 150 177 2.6E-53 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 PRINTS PR00474 Glutamate 5-kinase family signature 118 139 2.6E-53 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 PRINTS PR00474 Glutamate 5-kinase family signature 78 106 2.6E-53 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 PRINTS PR00474 Glutamate 5-kinase family signature 211 231 2.6E-53 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_2244 87ce6c270ba8241027c25f6982027839 368 PRINTS PR00474 Glutamate 5-kinase family signature 44 58 2.6E-53 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BMD_2904 4b674920fde64443a811b129f00c3006 176 SUPERFAMILY SSF88659 119 175 1.29E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_2904 4b674920fde64443a811b129f00c3006 176 Pfam PF04542 Sigma-70 region 2 23 90 4.4E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2904 4b674920fde64443a811b129f00c3006 176 SUPERFAMILY SSF88946 3 94 5.49E-25 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2904 4b674920fde64443a811b129f00c3006 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 173 1.0E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_2904 4b674920fde64443a811b129f00c3006 176 Gene3D G3DSA:1.10.1740.10 2 113 3.9E-25 T 13-10-2018 BMD_2904 4b674920fde64443a811b129f00c3006 176 Gene3D G3DSA:1.10.10.10 123 176 6.0E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2904 4b674920fde64443a811b129f00c3006 176 Pfam PF08281 Sigma-70, region 4 125 166 1.2E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4188 e3346bcc2311cba9572de31038b177aa 434 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 5 433 2.0E-239 T 13-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 BMD_4188 e3346bcc2311cba9572de31038b177aa 434 SUPERFAMILY SSF51905 8 367 8.7E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4188 e3346bcc2311cba9572de31038b177aa 434 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 6 434 37.116 T 13-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 BMD_4188 e3346bcc2311cba9572de31038b177aa 434 Gene3D G3DSA:3.50.50.60 290 434 1.6E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4188 e3346bcc2311cba9572de31038b177aa 434 Gene3D G3DSA:3.50.50.60 3 178 2.4E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4188 e3346bcc2311cba9572de31038b177aa 434 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 337 360 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 BMD_4188 e3346bcc2311cba9572de31038b177aa 434 Pfam PF01134 Glucose inhibited division protein A 6 367 1.2E-115 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 BMD_3707 399d4540b8b6adc5645e74a683761476 476 Pfam PF00155 Aminotransferase class I and II 145 464 1.9E-32 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_3707 399d4540b8b6adc5645e74a683761476 476 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 1.3E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3707 399d4540b8b6adc5645e74a683761476 476 Gene3D G3DSA:3.90.1150.10 110 465 7.7E-97 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3707 399d4540b8b6adc5645e74a683761476 476 Gene3D G3DSA:1.10.10.10 6 78 2.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3707 399d4540b8b6adc5645e74a683761476 476 SUPERFAMILY SSF53383 109 466 3.54E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3707 399d4540b8b6adc5645e74a683761476 476 SUPERFAMILY SSF46785 9 85 2.56E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3707 399d4540b8b6adc5645e74a683761476 476 Gene3D G3DSA:3.40.640.10 146 366 7.7E-97 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3707 399d4540b8b6adc5645e74a683761476 476 SMART SM00345 18 77 6.2E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3735 e2a4a626513c45cf6ba736bf49ed01a5 287 Gene3D G3DSA:2.160.20.120 34 207 1.6E-6 T 13-10-2018 BMD_3735 e2a4a626513c45cf6ba736bf49ed01a5 287 Pfam PF13349 Putative adhesin 48 285 1.0E-24 T 13-10-2018 IPR025164 Putative adhesin BMD_1951 548948f799230d28551f389049cff487 328 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 328 89.428 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 BMD_1951 548948f799230d28551f389049cff487 328 Pfam PF03186 CobD/Cbib protein 15 301 2.4E-100 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 BMD_1951 548948f799230d28551f389049cff487 328 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 14 299 4.7E-78 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 BMD_4110 e1911ef639ab273685098d1f956f7cd5 263 Pfam PF11868 Protein of unknown function (DUF3388) 72 261 2.1E-107 T 13-10-2018 IPR024514 Domain of unknown function DUF3388 BMD_4110 e1911ef639ab273685098d1f956f7cd5 263 SUPERFAMILY SSF55021 5 75 2.54E-7 T 13-10-2018 BMD_4110 e1911ef639ab273685098d1f956f7cd5 263 PIRSF PIRSF021288 1 262 1.9E-144 T 13-10-2018 IPR016784 Uncharacterised protein UCP021288 with ACT domain BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 SUPERFAMILY SSF52540 170 410 4.67E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 SUPERFAMILY SSF48452 713 818 6.83E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 Gene3D G3DSA:3.40.50.300 161 335 4.4E-18 T 13-10-2018 BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 SUPERFAMILY SSF48452 632 738 4.67E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 SMART SM00028 748 781 0.82 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 SMART SM00028 787 820 25.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 SMART SM00028 672 705 220.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 Gene3D G3DSA:1.25.40.10 613 819 3.8E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 SMART SM00382 194 347 3.7E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3589 f2ebe68591674f6c1d529dc0af89ddfb 844 Pfam PF00931 NB-ARC domain 199 401 8.9E-8 T 13-10-2018 IPR002182 NB-ARC GO:0043531 Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-6798695|Reactome: R-HSA-6803207|Reactome: R-HSA-8953750 BMD_3575 e993066486127e8cb16d68934af2fd9c 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 287 298 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_3575 e993066486127e8cb16d68934af2fd9c 489 Pfam PF00171 Aldehyde dehydrogenase family 26 485 2.7E-179 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_3575 e993066486127e8cb16d68934af2fd9c 489 Gene3D G3DSA:3.40.605.10 19 483 2.0E-185 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_3575 e993066486127e8cb16d68934af2fd9c 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 259 266 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_3575 e993066486127e8cb16d68934af2fd9c 489 Gene3D G3DSA:3.40.309.10 264 455 2.0E-185 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_3575 e993066486127e8cb16d68934af2fd9c 489 SUPERFAMILY SSF53720 9 488 3.4E-171 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_2091 9a8b69f7e776bafbe62eb1fd6010ac2f 196 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 58 194 1.1E-41 T 13-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_2091 9a8b69f7e776bafbe62eb1fd6010ac2f 196 SUPERFAMILY SSF49329 51 194 2.49E-43 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_2091 9a8b69f7e776bafbe62eb1fd6010ac2f 196 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 183 194 - T 13-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_2091 9a8b69f7e776bafbe62eb1fd6010ac2f 196 Gene3D G3DSA:2.60.40.200 48 196 1.6E-56 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 SUPERFAMILY SSF50022 17 155 5.11E-45 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 55 70 4.8E-24 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 76 96 4.8E-24 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 97 117 4.8E-24 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 140 166 4.8E-24 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 184 206 4.8E-24 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 25 50 4.8E-24 T 13-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 Gene3D G3DSA:3.90.380.10 17 373 2.4E-101 T 13-10-2018 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 184 377 1.3E-40 T 13-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 Pfam PF00355 Rieske [2Fe-2S] domain 40 124 5.4E-17 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 Gene3D G3DSA:2.102.10.10 38 160 2.4E-101 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_1522 8dbbea534d547077738e3ece525fc85b 382 SUPERFAMILY SSF55961 178 379 3.85E-37 T 13-10-2018 BMD_1962 11270a433a57e9951ef115a399f76cf4 309 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 151 4.2E-39 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain BMD_1962 11270a433a57e9951ef115a399f76cf4 309 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 302 7.3E-73 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 BMD_1962 11270a433a57e9951ef115a399f76cf4 309 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 178 300 1.2E-23 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain BMD_1962 11270a433a57e9951ef115a399f76cf4 309 SUPERFAMILY SSF48179 178 301 1.77E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_1962 11270a433a57e9951ef115a399f76cf4 309 Gene3D G3DSA:3.40.50.720 1 173 2.5E-51 T 13-10-2018 BMD_1962 11270a433a57e9951ef115a399f76cf4 309 SUPERFAMILY SSF51735 1 153 1.45E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1962 11270a433a57e9951ef115a399f76cf4 309 Gene3D G3DSA:1.10.1040.10 177 301 2.4E-31 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 Pfam PF00106 short chain dehydrogenase 8 195 2.9E-55 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 SUPERFAMILY SSF51735 4 253 7.8E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 Gene3D G3DSA:3.40.50.720 1 263 5.2E-66 T 13-10-2018 BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 7.6E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 7.6E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 7.6E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PIRSF PIRSF000126 1 264 8.9E-57 T 13-10-2018 BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4398 626243d61c778ce86fbc971e6fa1436a 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.5E-26 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 ProSitePatterns PS01218 TatC family signature. 145 164 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 230 14.697 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 Pfam PF00902 Sec-independent protein translocase protein (TatC) 8 212 9.6E-53 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 76 94 1.4E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 5 32 1.4E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 94 120 1.4E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 145 173 1.4E-35 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_5080 b0eaab054e3ebc07a2085aa9efb84d89 238 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 6 217 5.2E-53 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BMD_4211 4d8af8beda0b49abf085b2fafc5506bc 187 Gene3D G3DSA:1.10.10.10 1 60 6.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4211 4d8af8beda0b49abf085b2fafc5506bc 187 SUPERFAMILY SSF46785 5 52 3.34E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4211 4d8af8beda0b49abf085b2fafc5506bc 187 SUPERFAMILY SSF54637 74 181 9.49E-25 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_4211 4d8af8beda0b49abf085b2fafc5506bc 187 Gene3D G3DSA:3.10.129.10 68 185 1.7E-38 T 13-10-2018 BMD_4211 4d8af8beda0b49abf085b2fafc5506bc 187 Pfam PF03061 Thioesterase superfamily 112 169 1.6E-6 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_4211 4d8af8beda0b49abf085b2fafc5506bc 187 Hamap MF_01814 Transcription factor FapR [fapR]. 1 186 39.142 T 13-10-2018 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 BMD_4211 4d8af8beda0b49abf085b2fafc5506bc 187 PIRSF PIRSF037733 1 187 2.0E-85 T 13-10-2018 IPR017275 Transcription factor FapR GO:0003700|GO:0045717|GO:0045892 BMD_0528 8c1ac13fd7d249183291101a46fcc84a 130 Pfam PF17326 Family of unknown function (DUF5365) 1 115 9.1E-36 T 13-10-2018 IPR020355 Uncharacterised protein family YhcU BMD_0528 8c1ac13fd7d249183291101a46fcc84a 130 ProDom PD081567 YHCU 1 110 2.0E-10 T 13-10-2018 IPR020355 Uncharacterised protein family YhcU BMD_3595 ee017a7e339f44bf3f6fe3cb8f9b1f96 123 Gene3D G3DSA:1.10.10.810 1 115 3.8E-51 T 13-10-2018 BMD_3595 ee017a7e339f44bf3f6fe3cb8f9b1f96 123 Pfam PF08818 Domain of unknown function (DU1801) 17 110 7.1E-13 T 13-10-2018 IPR014922 Domain of unknown function DUF1801 BMD_3595 ee017a7e339f44bf3f6fe3cb8f9b1f96 123 SUPERFAMILY SSF159888 1 122 1.22E-40 T 13-10-2018 BMD_2970 ac34b2745c68be753925fa9cbad20c07 182 TIGRFAM TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase 5 182 7.4E-66 T 13-10-2018 IPR017552 3-hexulose-6-phosphate isomerase GO:0016853 BMD_2970 ac34b2745c68be753925fa9cbad20c07 182 Pfam PF01380 SIS domain 30 137 1.1E-19 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_2970 ac34b2745c68be753925fa9cbad20c07 182 SUPERFAMILY SSF53697 5 181 1.11E-37 T 13-10-2018 BMD_2970 ac34b2745c68be753925fa9cbad20c07 182 Gene3D G3DSA:3.40.50.10490 2 182 1.3E-52 T 13-10-2018 BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 Gene3D G3DSA:2.30.330.10 240 332 1.8E-9 T 13-10-2018 IPR036429 SpoA-like superfamily BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 91 107 6.3E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 116 135 6.3E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 6.3E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 6.3E-30 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 SUPERFAMILY SSF101801 251 328 1.57E-17 T 13-10-2018 IPR036429 SpoA-like superfamily BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 SUPERFAMILY SSF103039 47 232 1.7E-30 T 13-10-2018 IPR028976 CheC-like superfamily BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 322 1.3E-20 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 Gene3D G3DSA:3.40.1550.10 46 231 1.4E-61 T 13-10-2018 IPR028976 CheC-like superfamily BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 Pfam PF02154 Flagellar motor switch protein FliM 40 230 2.0E-72 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 PIRSF PIRSF002888 2 333 2.4E-117 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BMD_4169 76fd70e5d12c4fce13630b7e3922489f 333 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 323 2.1E-112 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 249 256 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 180 282 2.3E-33 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 SUPERFAMILY SSF46609 90 174 2.62E-30 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 Gene3D G3DSA:1.10.287.990 110 172 7.2E-24 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 SUPERFAMILY SSF54719 172 286 1.96E-39 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 Gene3D G3DSA:2.40.500.20 173 290 6.6E-42 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 PRINTS PR01703 Manganese superoxide dismutase signature 247 259 1.3E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 PRINTS PR01703 Manganese superoxide dismutase signature 96 107 1.3E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 PRINTS PR01703 Manganese superoxide dismutase signature 117 130 1.3E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 PRINTS PR01703 Manganese superoxide dismutase signature 156 169 1.3E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 PRINTS PR01703 Manganese superoxide dismutase signature 209 217 1.3E-19 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_2711 b38510f2f4e334e58516e13fa8e73eb1 294 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 92 173 1.2E-25 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 163 2.7E-31 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 SMART SM00852 5 171 1.9E-39 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 413 164.09 T 13-10-2018 IPR008135 Competence-induced protein CinA BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 Pfam PF02464 Competence-damaged protein 258 410 2.8E-50 T 13-10-2018 IPR008136 CinA, C-terminal BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 Gene3D G3DSA:3.40.980.10 1 196 2.4E-49 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 SUPERFAMILY SSF142433 251 412 3.79E-48 T 13-10-2018 IPR036653 CinA-like, C-terminal BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 412 3.7E-152 T 13-10-2018 IPR008135 Competence-induced protein CinA BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 Gene3D G3DSA:3.90.950.20 253 413 3.2E-52 T 13-10-2018 IPR036653 CinA-like, C-terminal BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 Pfam PF00994 Probable molybdopterin binding domain 6 169 2.1E-32 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 265 410 1.8E-41 T 13-10-2018 IPR008136 CinA, C-terminal BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 PIRSF PIRSF006728 1 413 1.1E-159 T 13-10-2018 IPR008135 Competence-induced protein CinA BMD_4107 7d09da1b3a6cde53ad931e9c4f25d384 413 SUPERFAMILY SSF53218 1 207 1.11E-40 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 Pfam PF01546 Peptidase family M20/M25/M40 74 384 1.1E-31 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 Pfam PF07687 Peptidase dimerisation domain 187 279 1.1E-9 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 Gene3D G3DSA:3.30.70.360 183 297 1.7E-146 T 13-10-2018 BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 SUPERFAMILY SSF55031 185 298 6.15E-30 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 PIRSF PIRSF005962 1 393 1.5E-132 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 Gene3D G3DSA:3.40.630.10 16 374 1.7E-146 T 13-10-2018 BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 SUPERFAMILY SSF53187 5 390 2.24E-88 T 13-10-2018 BMD_0596 4ba1d6875064be3ca3b29abea1991a1b 402 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 377 8.4E-125 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_1563 9af2948824f84b688ccd7263a7ec61ba 69 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 25 34 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_1563 9af2948824f84b688ccd7263a7ec61ba 69 Gene3D G3DSA:1.10.8.910 10 68 1.6E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_1563 9af2948824f84b688ccd7263a7ec61ba 69 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 43 57 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_1563 9af2948824f84b688ccd7263a7ec61ba 69 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 10 64 2.0E-21 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_3100 7aa5044183b85166514fe28153744df0 327 PIRSF PIRSF001220 1 326 4.2E-93 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 1 327 7.1E-128 T 13-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 Gene3D G3DSA:3.40.50.40 200 327 2.4E-35 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 6 14 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 BMD_3100 7aa5044183b85166514fe28153744df0 327 Pfam PF00710 Asparaginase, N-terminal 3 186 1.1E-63 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 PIRSF PIRSF500176 1 324 8.1E-101 T 13-10-2018 BMD_3100 7aa5044183b85166514fe28153744df0 327 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 78 88 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 Gene3D G3DSA:3.40.50.1170 2 199 8.6E-67 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 SUPERFAMILY SSF53774 2 326 2.36E-96 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 SMART SM00870 3 315 1.5E-105 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 PRINTS PR00139 Asparaginase/glutaminase family signature 252 270 6.5E-15 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 PRINTS PR00139 Asparaginase/glutaminase family signature 77 95 6.5E-15 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3100 7aa5044183b85166514fe28153744df0 327 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 6.5E-15 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_4750 e51148b7d258286696ad667aabdacad9 875 SMART SM00279 173 208 9.3E-18 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Gene3D G3DSA:1.20.1060.10 490 604 2.9E-45 T 13-10-2018 BMD_4750 e51148b7d258286696ad667aabdacad9 875 TIGRFAM TIGR00593 pola: DNA polymerase I 5 875 0.0 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 170 3.0E-55 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Gene3D G3DSA:1.10.150.20 656 799 6.0E-110 T 13-10-2018 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Gene3D G3DSA:1.10.150.20 174 247 5.8E-100 T 13-10-2018 BMD_4750 e51148b7d258286696ad667aabdacad9 875 SUPERFAMILY SSF56672 469 875 2.89E-160 T 13-10-2018 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Gene3D G3DSA:3.40.50.1010 5 278 5.8E-100 T 13-10-2018 BMD_4750 e51148b7d258286696ad667aabdacad9 875 SMART SM00475 3 262 4.2E-153 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BMD_4750 e51148b7d258286696ad667aabdacad9 875 SUPERFAMILY SSF88723 2 170 2.02E-56 T 13-10-2018 IPR029060 PIN-like domain superfamily BMD_4750 e51148b7d258286696ad667aabdacad9 875 SUPERFAMILY SSF53098 299 466 6.37E-42 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_4750 e51148b7d258286696ad667aabdacad9 875 SMART SM00474 299 465 8.5E-15 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 624 639 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 677 690 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 647 670 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 601 623 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 792 808 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 738 749 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 822 835 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 701 726 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 PRINTS PR00868 DNA-polymerase family A (pol I) signature 760 771 9.2E-81 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Pfam PF00476 DNA polymerase family A 498 873 7.9E-162 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 SUPERFAMILY SSF47807 171 285 9.72E-33 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BMD_4750 e51148b7d258286696ad667aabdacad9 875 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 264 6.6E-34 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Gene3D G3DSA:3.30.70.370 610 871 6.0E-110 T 13-10-2018 BMD_4750 e51148b7d258286696ad667aabdacad9 875 ProSitePatterns PS00447 DNA polymerase family A signature. 701 720 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4750 e51148b7d258286696ad667aabdacad9 875 Gene3D G3DSA:3.30.420.10 296 489 1.1E-66 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_4750 e51148b7d258286696ad667aabdacad9 875 SMART SM00482 632 839 7.9E-117 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_0675 d35b5c308e13a8e173b7b363b8c8c6fb 270 Gene3D G3DSA:3.40.50.1000 8 264 1.0E-63 T 13-10-2018 IPR023214 HAD superfamily BMD_0675 d35b5c308e13a8e173b7b363b8c8c6fb 270 ProSitePatterns PS01228 Hypothetical cof family signature 1. 7 18 - T 13-10-2018 BMD_0675 d35b5c308e13a8e173b7b363b8c8c6fb 270 SUPERFAMILY SSF56784 3 268 4.72E-68 T 13-10-2018 IPR036412 HAD-like superfamily BMD_0675 d35b5c308e13a8e173b7b363b8c8c6fb 270 Pfam PF08282 haloacid dehalogenase-like hydrolase 8 264 1.5E-65 T 13-10-2018 BMD_0675 d35b5c308e13a8e173b7b363b8c8c6fb 270 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 7 237 8.6E-26 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_0675 d35b5c308e13a8e173b7b363b8c8c6fb 270 Gene3D G3DSA:3.30.1240.10 87 193 1.0E-63 T 13-10-2018 BMD_0675 d35b5c308e13a8e173b7b363b8c8c6fb 270 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 7 264 3.3E-60 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_4444 ae611cff6d35e88f6bcb96f818a0890f 446 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 4 441 29.816 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BMD_4444 ae611cff6d35e88f6bcb96f818a0890f 446 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 8 348 5.6E-142 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BMD_4444 ae611cff6d35e88f6bcb96f818a0890f 446 Pfam PF13742 OB-fold nucleic acid binding domain 7 102 6.6E-32 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 BMD_4444 ae611cff6d35e88f6bcb96f818a0890f 446 Pfam PF02601 Exonuclease VII, large subunit 125 438 2.2E-105 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 BMD_2112 6e655d05c4ee76f81edba5223ec4d9a5 154 Pfam PF00583 Acetyltransferase (GNAT) family 39 130 6.6E-13 T 13-10-2018 IPR000182 GNAT domain BMD_2112 6e655d05c4ee76f81edba5223ec4d9a5 154 SUPERFAMILY SSF55729 7 152 3.26E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2112 6e655d05c4ee76f81edba5223ec4d9a5 154 Gene3D G3DSA:3.40.630.30 2 154 3.5E-42 T 13-10-2018 BMD_3231 35047fae0bd13d3003014b563e919203 260 Gene3D G3DSA:3.40.50.1000 4 254 1.8E-112 T 13-10-2018 IPR023214 HAD superfamily BMD_3231 35047fae0bd13d3003014b563e919203 260 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 114 196 3.1E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_3231 35047fae0bd13d3003014b563e919203 260 Gene3D G3DSA:1.10.150.240 22 99 1.8E-112 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_3231 35047fae0bd13d3003014b563e919203 260 SUPERFAMILY SSF56784 3 255 4.13E-59 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3231 35047fae0bd13d3003014b563e919203 260 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 3 254 8.9E-108 T 13-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 BMD_3231 35047fae0bd13d3003014b563e919203 260 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 260 113.187 T 13-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 BMD_3231 35047fae0bd13d3003014b563e919203 260 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 202 6.9E-15 T 13-10-2018 BMD_4247 9a68f48b8c2a36f1725825b88e75d10b 155 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 89 104 5.9E-17 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BMD_4247 9a68f48b8c2a36f1725825b88e75d10b 155 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 45 53 5.9E-17 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BMD_4247 9a68f48b8c2a36f1725825b88e75d10b 155 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 125 141 5.9E-17 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BMD_4247 9a68f48b8c2a36f1725825b88e75d10b 155 TIGRFAM TIGR00077 lspA: signal peptidase II 1 151 1.2E-45 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BMD_4247 9a68f48b8c2a36f1725825b88e75d10b 155 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 2 150 16.722 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BMD_4247 9a68f48b8c2a36f1725825b88e75d10b 155 Pfam PF01252 Signal peptidase (SPase) II 6 145 3.5E-39 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BMD_4247 9a68f48b8c2a36f1725825b88e75d10b 155 ProSitePatterns PS00855 Signal peptidases II signature. 92 104 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 Pfam PF01259 SAICAR synthetase 7 232 9.8E-67 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 233 1.8E-76 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 235 32.843 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 SUPERFAMILY SSF56104 2 233 1.83E-82 T 13-10-2018 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 Gene3D G3DSA:3.30.200.20 7 232 1.4E-97 T 13-10-2018 BMD_0274 623c4bb552fef81922276e2ede8196a6 235 Gene3D G3DSA:3.30.470.20 85 221 1.4E-97 T 13-10-2018 BMD_4761 439c890e1da83e699a032e767bceab3d 325 Gene3D G3DSA:3.90.226.10 2 317 1.6E-123 T 13-10-2018 BMD_4761 439c890e1da83e699a032e767bceab3d 325 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 3 318 1.2E-159 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 SUPERFAMILY SSF52096 6 315 1.17E-100 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4761 439c890e1da83e699a032e767bceab3d 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 168 181 4.3E-47 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 133 149 4.3E-47 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 196 205 4.3E-47 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 112 130 4.3E-47 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 152 165 4.3E-47 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 87 98 4.3E-47 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 4 315 49.54 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4761 439c890e1da83e699a032e767bceab3d 325 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 147 1.2E-66 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_3506 8cb07722ceff7f97055b317b41b45a1a 544 Gene3D G3DSA:3.50.30.10 437 543 4.0E-31 T 13-10-2018 BMD_3506 8cb07722ceff7f97055b317b41b45a1a 544 Pfam PF00391 PEP-utilising enzyme, mobile domain 466 537 6.0E-21 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BMD_3506 8cb07722ceff7f97055b317b41b45a1a 544 SUPERFAMILY SSF52009 437 542 8.63E-28 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 Gene3D G3DSA:3.40.50.300 288 585 7.0E-71 T 13-10-2018 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 405 421 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 Pfam PF00488 MutS domain V 326 505 1.0E-33 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 SUPERFAMILY SSF52540 289 508 3.58E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 PIRSF PIRSF005814 1 632 1.5E-205 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 Gene3D G3DSA:1.10.1420.10 113 223 3.7E-9 T 13-10-2018 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 SUPERFAMILY SSF48334 21 285 5.62E-24 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 SMART SM00534 323 508 1.5E-58 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 Gene3D G3DSA:1.10.1420.10 21 277 3.7E-9 T 13-10-2018 BMD_3232 ad4a5457c2efb44c1109454fdadf8113 632 SMART SM00533 9 311 3.7E-23 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BMD_2837 990f422fcb5e474b37eae22eb0cecf0a 361 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 52 278 3.8E-55 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA BMD_2837 990f422fcb5e474b37eae22eb0cecf0a 361 SUPERFAMILY SSF56300 73 311 2.45E-41 T 13-10-2018 BMD_2837 990f422fcb5e474b37eae22eb0cecf0a 361 SMART SM00854 52 279 4.5E-80 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA BMD_2837 990f422fcb5e474b37eae22eb0cecf0a 361 Gene3D G3DSA:3.60.21.10 121 294 2.8E-6 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_2929 13cb27c79c65641df242ce3eb2cc2f62 148 TIGRFAM TIGR03563 perox_SACOL1771: peroxiredoxin, SACOL1771 subfamily 4 140 1.3E-67 T 13-10-2018 IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes BMD_2929 13cb27c79c65641df242ce3eb2cc2f62 148 Pfam PF02566 OsmC-like protein 39 141 2.5E-19 T 13-10-2018 IPR003718 OsmC/Ohr family BMD_2929 13cb27c79c65641df242ce3eb2cc2f62 148 Gene3D G3DSA:3.30.300.20 6 145 7.5E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_2929 13cb27c79c65641df242ce3eb2cc2f62 148 SUPERFAMILY SSF82784 3 140 3.14E-34 T 13-10-2018 IPR036102 OsmC/Ohr superfamily BMD_2930 3c310c84ee153c2822f909e678432663 298 Gene3D G3DSA:3.40.50.720 1 294 4.6E-29 T 13-10-2018 BMD_2930 3c310c84ee153c2822f909e678432663 298 SUPERFAMILY SSF51735 1 290 1.09E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2930 3c310c84ee153c2822f909e678432663 298 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 209 2.2E-6 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 SUPERFAMILY SSF56784 334 633 1.56E-55 T 13-10-2018 IPR036412 HAD-like superfamily BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00941 Cadmium-transporting ATPase signature 47 64 1.4E-16 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00941 Cadmium-transporting ATPase signature 64 76 1.4E-16 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00941 Cadmium-transporting ATPase signature 139 155 1.4E-16 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00941 Cadmium-transporting ATPase signature 200 216 1.4E-16 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00941 Cadmium-transporting ATPase signature 119 139 1.4E-16 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00941 Cadmium-transporting ATPase signature 219 233 1.4E-16 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 SUPERFAMILY SSF81665 86 613 5.1E-19 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 Gene3D G3DSA:3.40.1110.10 346 466 9.4E-85 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 107 614 9.5E-85 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 84 422 5.4E-96 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 337 343 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 335 349 3.2E-30 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 184 198 3.2E-30 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 481 491 3.2E-30 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 553 3.2E-30 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 459 470 3.2E-30 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 557 569 3.2E-30 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 Pfam PF00122 E1-E2 ATPase 135 315 2.7E-48 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 84 636 1.7E-180 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 SUPERFAMILY SSF81653 137 234 3.01E-26 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 Gene3D G3DSA:3.40.50.1000 316 585 9.4E-85 T 13-10-2018 IPR023214 HAD superfamily BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 Pfam PF00702 haloacid dehalogenase-like hydrolase 333 548 1.0E-37 T 13-10-2018 BMD_0375 135323b497c710ea7084bf4f22bc2b5c 639 Gene3D G3DSA:2.70.150.20 122 238 4.9E-36 T 13-10-2018 BMD_4028 2b9b586d5ae853b42debe0db6b76bebc 222 Gene3D G3DSA:3.40.1080.10 7 219 1.4E-85 T 13-10-2018 BMD_4028 2b9b586d5ae853b42debe0db6b76bebc 222 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 10 212 1.4E-89 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 BMD_4028 2b9b586d5ae853b42debe0db6b76bebc 222 SUPERFAMILY SSF100950 8 218 5.31E-62 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_4028 2b9b586d5ae853b42debe0db6b76bebc 222 Pfam PF01144 Coenzyme A transferase 13 204 1.9E-35 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4028 2b9b586d5ae853b42debe0db6b76bebc 222 SMART SM00882 11 207 1.3E-55 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 7.8E-21 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 Pfam PF01197 Ribosomal protein L31 1 79 1.4E-28 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 Gene3D G3DSA:2.30.170.50 1 81 2.0E-26 T 13-10-2018 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 26.8 T 13-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 SUPERFAMILY SSF143800 1 79 6.67E-24 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 PRINTS PR01249 Ribosomal protein L31 signature 60 78 1.7E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 PRINTS PR01249 Ribosomal protein L31 signature 45 60 1.7E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4863 30f0977dfe9c9af2756a074af17340ba 81 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.7E-19 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 SUPERFAMILY SSF52540 112 323 4.88E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 SMART SM00760 355 424 2.0E-41 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 8 444 6.9E-190 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 SMART SM00382 143 271 5.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 144 164 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 242 269 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 176 190 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 208 222 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 405 424 7.8E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 ProSitePatterns PS01008 DnaA protein signature. 405 424 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Gene3D G3DSA:1.10.8.60 277 345 1.6E-29 T 13-10-2018 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 SUPERFAMILY SSF48295 342 445 1.49E-36 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Gene3D G3DSA:3.40.50.300 96 275 8.0E-55 T 13-10-2018 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Pfam PF00308 Bacterial dnaA protein 111 327 6.4E-107 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Gene3D G3DSA:3.30.300.180 1 81 1.9E-32 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Gene3D G3DSA:1.10.1750.10 346 446 2.3E-35 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 356 424 1.6E-30 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 5 446 35.224 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BMD_0001 056fc2e54d6389e3be7280f3e8780f78 447 Pfam PF11638 DnaA N-terminal domain 6 66 1.2E-18 T 13-10-2018 IPR024633 DnaA N-terminal domain BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 SUPERFAMILY SSF88946 22 131 1.44E-35 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 TIGRFAM TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor 8 239 6.6E-136 T 13-10-2018 IPR014200 RNA polymerase sigma-E type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 Gene3D G3DSA:1.20.120.1810 19 131 3.0E-25 T 13-10-2018 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 205 231 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 Gene3D G3DSA:1.10.10.10 168 239 1.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 PIRSF PIRSF000770 10 239 3.7E-77 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 58 234 6.3E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 PRINTS PR00046 Major sigma-70 factor signature 86 99 7.1E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 PRINTS PR00046 Major sigma-70 factor signature 184 196 7.1E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 PRINTS PR00046 Major sigma-70 factor signature 220 231 7.1E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 PRINTS PR00046 Major sigma-70 factor signature 205 220 7.1E-12 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 Pfam PF04542 Sigma-70 region 2 62 131 1.8E-18 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 Pfam PF04545 Sigma-70, region 4 180 233 1.8E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 86 99 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4258 06b347bada9f3a1a4e140f99acc20ab5 239 SUPERFAMILY SSF88659 143 237 1.08E-21 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_1041 19325c33fffe9cf193a25231831df581 310 Gene3D G3DSA:3.20.20.100 2 310 5.3E-116 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1041 19325c33fffe9cf193a25231831df581 310 Pfam PF00248 Aldo/keto reductase family 16 308 2.6E-74 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_1041 19325c33fffe9cf193a25231831df581 310 SUPERFAMILY SSF51430 4 309 1.44E-93 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1041 19325c33fffe9cf193a25231831df581 310 PRINTS PR00069 Aldo-keto reductase signature 242 266 3.8E-17 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1041 19325c33fffe9cf193a25231831df581 310 PRINTS PR00069 Aldo-keto reductase signature 45 69 3.8E-17 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1041 19325c33fffe9cf193a25231831df581 310 PRINTS PR00069 Aldo-keto reductase signature 142 159 3.8E-17 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1041 19325c33fffe9cf193a25231831df581 310 PRINTS PR00069 Aldo-keto reductase signature 111 129 3.8E-17 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1041 19325c33fffe9cf193a25231831df581 310 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 142 159 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 203 431 1.1E-89 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 SUPERFAMILY SSF52777 194 431 5.34E-90 T 13-10-2018 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 Gene3D G3DSA:3.30.559.10 183 429 1.4E-92 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 Pfam PF00364 Biotin-requiring enzyme 4 75 7.9E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 Gene3D G3DSA:2.40.50.100 2 81 3.9E-25 T 13-10-2018 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 SUPERFAMILY SSF51230 3 93 6.15E-26 T 13-10-2018 IPR011053 Single hybrid motif BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 Gene3D G3DSA:4.10.320.10 115 169 1.3E-21 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 Pfam PF02817 e3 binding domain 127 161 8.8E-16 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BMD_1328 42bd34c9651f9f572a9c635f7bc9ff7f 433 SUPERFAMILY SSF47005 121 166 6.8E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 Gene3D G3DSA:1.10.8.50 128 272 1.0E-33 T 13-10-2018 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 SUPERFAMILY SSF81624 2 127 1.83E-19 T 13-10-2018 IPR035937 MutM-like, N-terminal BMD_0877 d2104a03206459875774ff8280e5fb2a 272 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 104 1.5E-8 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 SUPERFAMILY SSF46946 126 216 2.49E-18 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 127 216 6.0E-15 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 SMART SM01232 126 221 4.7E-17 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 SUPERFAMILY SSF57716 234 272 1.51E-9 T 13-10-2018 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 SMART SM00898 2 110 1.4E-7 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BMD_0877 d2104a03206459875774ff8280e5fb2a 272 Gene3D G3DSA:3.20.190.10 2 127 1.7E-26 T 13-10-2018 IPR035937 MutM-like, N-terminal BMD_1629 7d27c721636fb8cbf6fcd8f1f6f09755 167 Gene3D G3DSA:1.20.120.450 1 150 7.5E-38 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_1629 7d27c721636fb8cbf6fcd8f1f6f09755 167 Pfam PF05163 DinB family 2 157 2.5E-27 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB BMD_1629 7d27c721636fb8cbf6fcd8f1f6f09755 167 SUPERFAMILY SSF109854 7 152 3.97E-24 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_4918 eb509177bd63b91640811636975dcded 237 Gene3D G3DSA:3.40.50.620 15 237 2.4E-74 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4918 eb509177bd63b91640811636975dcded 237 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 41 212 9.0E-53 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 BMD_4918 eb509177bd63b91640811636975dcded 237 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 28 236 9.3E-93 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BMD_4918 eb509177bd63b91640811636975dcded 237 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 46 234 2.6E-77 T 13-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 BMD_4918 eb509177bd63b91640811636975dcded 237 SUPERFAMILY SSF52402 18 200 5.76E-51 T 13-10-2018 BMD_4918 eb509177bd63b91640811636975dcded 237 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 4 236 42.031 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BMD_4918 eb509177bd63b91640811636975dcded 237 PIRSF PIRSF000857 7 237 6.4E-89 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 PIRSF PIRSF000770 5 253 4.5E-38 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 TIGRFAM TIGR02885 spore_sigF: RNA polymerase sigma-F factor 22 248 8.4E-114 T 13-10-2018 IPR014236 RNA polymerase sigma-F type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 PRINTS PR00046 Major sigma-70 factor signature 203 215 4.2E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 PRINTS PR00046 Major sigma-70 factor signature 61 74 4.2E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 PRINTS PR00046 Major sigma-70 factor signature 220 235 4.2E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 PRINTS PR00046 Major sigma-70 factor signature 85 93 4.2E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 PRINTS PR00046 Major sigma-70 factor signature 235 246 4.2E-11 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 TIGRFAM TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily 31 249 3.0E-87 T 13-10-2018 IPR014322 RNA polymerase sigma-B/F/G type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 Gene3D G3DSA:1.10.10.10 179 252 7.5E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 33 248 4.5E-37 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 Gene3D G3DSA:1.10.10.10 106 160 1.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 Pfam PF04542 Sigma-70 region 2 38 104 1.1E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 SUPERFAMILY SSF88946 6 105 1.22E-33 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 SUPERFAMILY SSF88659 109 184 1.4E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 Pfam PF04545 Sigma-70, region 4 199 247 2.2E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 SUPERFAMILY SSF88659 171 252 1.42E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 Gene3D G3DSA:1.10.601.10 3 105 2.1E-27 T 13-10-2018 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 Pfam PF04539 Sigma-70 region 3 117 181 5.6E-14 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 61 74 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_4377 343c765be7ca0fa18a2e8d9e4f7c56fc 253 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 220 246 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_1891 6b73c2dc0de7c04298616eb4c5c23020 139 PRINTS PR01438 Universal stress protein signature 2 20 9.2E-20 T 13-10-2018 IPR006015 Universal stress protein A BMD_1891 6b73c2dc0de7c04298616eb4c5c23020 139 PRINTS PR01438 Universal stress protein signature 99 111 9.2E-20 T 13-10-2018 IPR006015 Universal stress protein A BMD_1891 6b73c2dc0de7c04298616eb4c5c23020 139 PRINTS PR01438 Universal stress protein signature 117 139 9.2E-20 T 13-10-2018 IPR006015 Universal stress protein A BMD_1891 6b73c2dc0de7c04298616eb4c5c23020 139 Pfam PF00582 Universal stress protein family 1 139 1.6E-28 T 13-10-2018 IPR006016 UspA BMD_1891 6b73c2dc0de7c04298616eb4c5c23020 139 Gene3D G3DSA:3.40.50.620 1 139 8.1E-36 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_1891 6b73c2dc0de7c04298616eb4c5c23020 139 SUPERFAMILY SSF52402 1 139 5.79E-33 T 13-10-2018 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 Gene3D G3DSA:3.40.50.970 1 174 1.6E-72 T 13-10-2018 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 449 7.0E-157 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 SUPERFAMILY SSF52518 388 576 1.81E-30 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 441 555 3.9E-10 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 Pfam PF16582 Middle domain of thiamine pyrophosphate 222 405 9.7E-21 T 13-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 SUPERFAMILY SSF52518 9 178 2.55E-39 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 573 37.054 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 Gene3D G3DSA:3.40.50.1220 201 382 1.7E-58 T 13-10-2018 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 Gene3D G3DSA:3.40.50.970 384 581 1.4E-64 T 13-10-2018 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 SUPERFAMILY SSF52467 167 376 2.94E-10 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 PIRSF PIRSF004983 1 580 3.6E-201 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BMD_4877 3d1bf39c0bb358e9a5a7115abda0a66d 584 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 175 1.7E-40 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 1.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.9E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 Gene3D G3DSA:3.40.50.720 3 247 1.2E-76 T 13-10-2018 BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 SUPERFAMILY SSF51735 5 247 4.09E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 246 1.6E-57 T 13-10-2018 BMD_3454 86c6f4abf5479e2bf444d80ba288b013 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 SMART SM00382 28 236 5.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 SMART SM00382 349 518 4.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 Pfam PF12848 ABC transporter 230 315 1.4E-21 T 13-10-2018 IPR032781 ABC-transporter extension domain BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 SUPERFAMILY SSF52540 307 507 4.74E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 Pfam PF00005 ABC transporter 20 191 1.9E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 SUPERFAMILY SSF52540 5 246 3.06E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 Gene3D G3DSA:3.40.50.300 289 515 3.9E-43 T 13-10-2018 BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 Gene3D G3DSA:3.40.50.300 2 285 2.3E-67 T 13-10-2018 BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 Pfam PF00005 ABC transporter 341 469 6.2E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0361 57d05102d71ac6cfaed8373df3730c96 518 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 112 130 1.0E-18 T 13-10-2018 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.0E-18 T 13-10-2018 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 1.0E-18 T 13-10-2018 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.0E-18 T 13-10-2018 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 302 8.4E-31 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 Hamap MF_01685 Ferredoxin--NADP reductase. 7 328 44.225 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 SUPERFAMILY SSF51905 8 315 2.72E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 66 76 1.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 1.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 152 176 1.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 113 121 1.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 203 219 1.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 275 293 1.0E-24 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4952 d312bd18913b7b05adcd225db1a45933 330 Gene3D G3DSA:3.50.50.60 7 304 7.3E-117 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4952 d312bd18913b7b05adcd225db1a45933 330 Gene3D G3DSA:3.50.50.60 128 246 7.3E-117 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 Pfam PF13396 Phospholipase_D-nuclease N-terminal 41 81 7.2E-8 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 SMART SM00155 237 264 8.1E-6 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 SMART SM00155 413 440 7.1E-7 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 Hamap MF_01916 Cardiolipin synthase. 34 500 39.05 T 13-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 41 500 1.4E-144 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 SUPERFAMILY SSF56024 117 331 2.41E-50 T 13-10-2018 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 Gene3D G3DSA:3.30.870.10 323 471 5.4E-28 T 13-10-2018 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 Pfam PF13091 PLD-like domain 154 297 8.4E-13 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 Pfam PF13091 PLD-like domain 342 467 1.1E-25 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 SUPERFAMILY SSF56024 289 485 5.61E-45 T 13-10-2018 BMD_1477 648879789a7a8ebfe4f5dac64d567131 500 Gene3D G3DSA:3.30.870.10 130 320 1.0E-40 T 13-10-2018 BMD_2546 520394c6de80245c91c53ed165c31f66 906 Gene3D G3DSA:3.30.499.10 375 599 1.0E-100 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 Gene3D G3DSA:3.20.19.10 664 901 5.3E-104 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 502 515 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 440 451 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 280 293 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 204 217 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 294 307 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 147 160 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 171 179 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 218 233 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 PRINTS PR00415 Aconitase family signature 374 388 2.9E-41 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 Gene3D G3DSA:3.30.499.20 7 374 8.0E-158 T 13-10-2018 BMD_2546 520394c6de80245c91c53ed165c31f66 906 Gene3D G3DSA:1.10.1440.20 600 660 5.3E-23 T 13-10-2018 BMD_2546 520394c6de80245c91c53ed165c31f66 906 ProSitePatterns PS01244 Aconitase family signature 2. 502 515 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 Pfam PF00330 Aconitase family (aconitate hydratase) 77 571 2.4E-176 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 SUPERFAMILY SSF52016 640 899 9.61E-87 T 13-10-2018 BMD_2546 520394c6de80245c91c53ed165c31f66 906 SUPERFAMILY SSF53732 5 635 5.62E-225 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 ProSitePatterns PS00450 Aconitase family signature 1. 436 452 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 Pfam PF00694 Aconitase C-terminal domain 701 828 2.5E-45 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 BMD_2546 520394c6de80245c91c53ed165c31f66 906 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 900 0.0 T 13-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 BMD_1197 a44b715d84d2ccde87299e3160ac824a 388 Pfam PF12698 ABC-2 family transporter protein 18 374 2.2E-34 T 13-10-2018 BMD_4051 e3f60a432e1c08bfec32e6ad58a22cf3 197 Pfam PF13523 Acetyltransferase (GNAT) domain 28 170 1.3E-44 T 13-10-2018 BMD_4051 e3f60a432e1c08bfec32e6ad58a22cf3 197 Gene3D G3DSA:3.40.630.30 3 197 4.2E-57 T 13-10-2018 BMD_4051 e3f60a432e1c08bfec32e6ad58a22cf3 197 SMART SM01006 23 70 5.5E-12 T 13-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain BMD_4051 e3f60a432e1c08bfec32e6ad58a22cf3 197 SUPERFAMILY SSF55729 9 182 7.4E-47 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 Pfam PF03466 LysR substrate binding domain 87 289 1.8E-44 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 Gene3D G3DSA:3.40.190.290 90 293 2.9E-41 T 13-10-2018 BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 SUPERFAMILY SSF53850 86 290 5.7E-41 T 13-10-2018 BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.8E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 Gene3D G3DSA:1.10.10.10 1 89 1.7E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2842 53afd4e22f3a74c0fbea586bd8572f7d 296 SUPERFAMILY SSF46785 1 110 2.24E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1167 6f7a970bfc211a90f2220c758e65466c 407 Pfam PF12698 ABC-2 family transporter protein 20 394 2.8E-26 T 13-10-2018 BMD_1167 6f7a970bfc211a90f2220c758e65466c 407 Gene3D G3DSA:3.40.1710.10 44 129 2.6E-5 T 13-10-2018 BMD_3670 8a89c04205a288be809489fc5ec88a84 190 Pfam PF00072 Response regulator receiver domain 5 114 3.8E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3670 8a89c04205a288be809489fc5ec88a84 190 SMART SM00448 3 114 2.5E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3670 8a89c04205a288be809489fc5ec88a84 190 Pfam PF03861 ANTAR domain 133 185 6.0E-17 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 BMD_3670 8a89c04205a288be809489fc5ec88a84 190 PIRSF PIRSF036382 1 190 1.0E-60 T 13-10-2018 IPR008327 Signal transduction response regulator, antiterminator BMD_3670 8a89c04205a288be809489fc5ec88a84 190 SMART SM01012 130 185 2.6E-16 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 BMD_3670 8a89c04205a288be809489fc5ec88a84 190 Gene3D G3DSA:3.40.50.2300 1 131 7.7E-35 T 13-10-2018 BMD_3670 8a89c04205a288be809489fc5ec88a84 190 Gene3D G3DSA:1.10.10.10 132 190 5.8E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3670 8a89c04205a288be809489fc5ec88a84 190 SUPERFAMILY SSF52172 3 185 4.98E-49 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2958 2c8340019cc907e3d670890b9a725d2a 80 Pfam PF10676 Spore germination protein gerPA/gerPF 5 71 3.8E-16 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF BMD_1878 696ccb40958b9b5cea63849609f15a65 404 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 393 5.1E-134 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_1878 696ccb40958b9b5cea63849609f15a65 404 Gene3D G3DSA:3.40.640.10 10 260 2.6E-82 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1878 696ccb40958b9b5cea63849609f15a65 404 Gene3D G3DSA:3.90.1150.10 261 396 1.5E-46 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1878 696ccb40958b9b5cea63849609f15a65 404 PIRSF PIRSF001434 1 397 2.4E-144 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_1878 696ccb40958b9b5cea63849609f15a65 404 SUPERFAMILY SSF53383 24 394 3.76E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1196 b1a56c882a65e087e6e8610755db55ed 245 SUPERFAMILY SSF52540 1 229 2.84E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1196 b1a56c882a65e087e6e8610755db55ed 245 Pfam PF00005 ABC transporter 22 165 1.6E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1196 b1a56c882a65e087e6e8610755db55ed 245 SMART SM00382 30 213 7.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1196 b1a56c882a65e087e6e8610755db55ed 245 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1196 b1a56c882a65e087e6e8610755db55ed 245 Gene3D G3DSA:3.40.50.300 1 243 9.9E-69 T 13-10-2018 BMD_4256 4aad2ebfed0d5ddb132a56b698c712b6 84 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 3 73 4.0E-26 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH BMD_4256 4aad2ebfed0d5ddb132a56b698c712b6 84 Pfam PF05239 PRC-barrel domain 3 75 6.3E-16 T 13-10-2018 IPR027275 PRC-barrel domain BMD_4256 4aad2ebfed0d5ddb132a56b698c712b6 84 SUPERFAMILY SSF50346 1 74 8.37E-15 T 13-10-2018 IPR011033 PRC-barrel-like superfamily BMD_4256 4aad2ebfed0d5ddb132a56b698c712b6 84 Gene3D G3DSA:2.30.30.240 1 76 1.8E-12 T 13-10-2018 BMD_2231 6cb2bbcdde29c7523417229474ad3b6e 139 Pfam PF02566 OsmC-like protein 40 134 9.1E-18 T 13-10-2018 IPR003718 OsmC/Ohr family BMD_2231 6cb2bbcdde29c7523417229474ad3b6e 139 Gene3D G3DSA:3.30.300.20 44 136 1.7E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_2231 6cb2bbcdde29c7523417229474ad3b6e 139 Gene3D G3DSA:2.20.25.10 3 43 2.6E-14 T 13-10-2018 BMD_2231 6cb2bbcdde29c7523417229474ad3b6e 139 SUPERFAMILY SSF82784 5 135 3.14E-38 T 13-10-2018 IPR036102 OsmC/Ohr superfamily BMD_2231 6cb2bbcdde29c7523417229474ad3b6e 139 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 5 135 6.3E-52 T 13-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 BMD_4944 6e4d155e3d259abdb76e84dea757f2c1 179 Gene3D G3DSA:1.10.3210.10 5 171 2.2E-18 T 13-10-2018 BMD_4944 6e4d155e3d259abdb76e84dea757f2c1 179 SUPERFAMILY SSF109604 15 138 1.98E-21 T 13-10-2018 BMD_4944 6e4d155e3d259abdb76e84dea757f2c1 179 Pfam PF01966 HD domain 26 136 9.1E-16 T 13-10-2018 IPR006674 HD domain BMD_4944 6e4d155e3d259abdb76e84dea757f2c1 179 SMART SM00471 20 149 3.9E-7 T 13-10-2018 IPR003607 HD/PDEase domain BMD_4944 6e4d155e3d259abdb76e84dea757f2c1 179 TIGRFAM TIGR00277 HDIG: HDIG domain 23 92 3.8E-8 T 13-10-2018 IPR006675 HDIG domain BMD_0317 d258823ba1afdbb3bc57066e9a5f30d8 179 Pfam PF03413 Peptidase propeptide and YPEB domain 117 175 1.0E-14 T 13-10-2018 IPR025711 PepSY domain BMD_0317 d258823ba1afdbb3bc57066e9a5f30d8 179 Pfam PF03413 Peptidase propeptide and YPEB domain 39 95 2.8E-8 T 13-10-2018 IPR025711 PepSY domain BMD_0317 d258823ba1afdbb3bc57066e9a5f30d8 179 Gene3D G3DSA:3.10.450.40 28 100 9.1E-15 T 13-10-2018 BMD_0317 d258823ba1afdbb3bc57066e9a5f30d8 179 Gene3D G3DSA:3.10.450.40 107 179 1.9E-18 T 13-10-2018 BMD_0225 16402285a3a347bd0c860d1113338d4d 133 Gene3D G3DSA:3.30.565.10 4 130 9.6E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0225 16402285a3a347bd0c860d1113338d4d 133 SMART SM00387 34 133 1.0E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0225 16402285a3a347bd0c860d1113338d4d 133 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 127 2.1E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0225 16402285a3a347bd0c860d1113338d4d 133 SUPERFAMILY SSF55874 22 126 3.14E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0338 42602d52dd694e90cc5e317bf3637480 151 SUPERFAMILY SSF47240 18 145 6.5E-20 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_0338 42602d52dd694e90cc5e317bf3637480 151 Gene3D G3DSA:1.20.1260.10 18 150 7.3E-12 T 13-10-2018 IPR012347 Ferritin-like BMD_0338 42602d52dd694e90cc5e317bf3637480 151 Pfam PF02915 Rubrerythrin 27 144 2.6E-10 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 PRINTS PR00449 Transforming protein P21 ras signature 225 246 1.5E-5 T 13-10-2018 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 PRINTS PR00449 Transforming protein P21 ras signature 265 287 1.5E-5 T 13-10-2018 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 PRINTS PR00449 Transforming protein P21 ras signature 329 342 1.5E-5 T 13-10-2018 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 Gene3D G3DSA:1.20.120.430 129 462 4.0E-108 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 Pfam PF12631 MnmE helical domain 130 459 3.3E-59 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 Gene3D G3DSA:3.40.50.300 225 390 4.0E-108 T 13-10-2018 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 12 462 2.0E-129 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 Pfam PF01926 50S ribosome-binding GTPase 228 339 1.1E-25 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 SUPERFAMILY SSF116878 129 462 5.75E-50 T 13-10-2018 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 127 1.3E-40 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 SUPERFAMILY SSF52540 81 378 6.37E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 228 375 8.6E-29 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 462 34.342 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 BMD_5268 fbbfdba281cee9f45b6f4ac096e19091 462 Gene3D G3DSA:3.30.1360.120 1 127 4.8E-49 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BMD_2005 4732a6196d6d0c81170dcd267fc87386 217 Gene3D G3DSA:1.10.10.10 8 75 2.2E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2005 4732a6196d6d0c81170dcd267fc87386 217 SUPERFAMILY SSF46785 10 77 7.39E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2005 4732a6196d6d0c81170dcd267fc87386 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 6.2E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2005 4732a6196d6d0c81170dcd267fc87386 217 SUPERFAMILY SSF48008 82 198 3.66E-11 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_2005 4732a6196d6d0c81170dcd267fc87386 217 SMART SM00345 15 73 2.6E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2005 4732a6196d6d0c81170dcd267fc87386 217 Pfam PF07729 FCD domain 83 201 1.3E-11 T 13-10-2018 IPR011711 GntR, C-terminal BMD_2005 4732a6196d6d0c81170dcd267fc87386 217 Gene3D G3DSA:1.20.120.530 82 209 5.0E-14 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_2615 c511b0c2fef7f71d55dc7db0d7d6cb0d 427 Gene3D G3DSA:1.10.3430.10 1 421 2.7E-137 T 13-10-2018 IPR029020 Ammonium/urea transporter BMD_2615 c511b0c2fef7f71d55dc7db0d7d6cb0d 427 SUPERFAMILY SSF111352 10 384 2.88E-108 T 13-10-2018 BMD_2615 c511b0c2fef7f71d55dc7db0d7d6cb0d 427 ProSitePatterns PS01219 Ammonium transporters signature. 160 185 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 BMD_2615 c511b0c2fef7f71d55dc7db0d7d6cb0d 427 TIGRFAM TIGR00836 amt: ammonium transporter 11 403 1.3E-121 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 BMD_2615 c511b0c2fef7f71d55dc7db0d7d6cb0d 427 Pfam PF00909 Ammonium Transporter Family 14 403 3.8E-115 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 BMD_3340 e7e11a86988c48f19774b7c1ed1b6f6c 400 SUPERFAMILY SSF53383 4 390 2.2E-110 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3340 e7e11a86988c48f19774b7c1ed1b6f6c 400 Pfam PF00155 Aminotransferase class I and II 55 383 1.1E-36 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_3340 e7e11a86988c48f19774b7c1ed1b6f6c 400 Gene3D G3DSA:3.90.1150.10 15 387 9.8E-142 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3340 e7e11a86988c48f19774b7c1ed1b6f6c 400 Gene3D G3DSA:3.40.640.10 64 284 9.8E-142 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_5147 102cc017dcc7a96c55d9ac74c5363a5f 190 PIRSF PIRSF007510 9 190 1.7E-79 T 13-10-2018 IPR006340 Protein of unknown function DUF436 BMD_5147 102cc017dcc7a96c55d9ac74c5363a5f 190 SUPERFAMILY SSF110710 12 188 4.71E-76 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like BMD_5147 102cc017dcc7a96c55d9ac74c5363a5f 190 Pfam PF04260 Protein of unknown function (DUF436) 17 187 3.4E-77 T 13-10-2018 IPR006340 Protein of unknown function DUF436 BMD_5147 102cc017dcc7a96c55d9ac74c5363a5f 190 ProDom PD102102 UPF0340 3D-STRUCTURE YWLG SMU.87 STU1894 BT9727_4999 TRANSFERASE TTE0860 SPY1898/M5005_SPY1614 TT1679 22 187 2.0E-63 T 13-10-2018 IPR006340 Protein of unknown function DUF436 BMD_5147 102cc017dcc7a96c55d9ac74c5363a5f 190 Hamap MF_00800 UPF0340 protein . 1 190 85.624 T 13-10-2018 IPR006340 Protein of unknown function DUF436 BMD_5147 102cc017dcc7a96c55d9ac74c5363a5f 190 Gene3D G3DSA:3.40.50.10360 11 190 1.8E-79 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like BMD_5147 102cc017dcc7a96c55d9ac74c5363a5f 190 TIGRFAM TIGR01440 TIGR01440: TIGR01440 family protein 16 187 3.5E-77 T 13-10-2018 IPR006340 Protein of unknown function DUF436 BMD_3612 0c1e95a393d21bbce363310a48451af9 332 SUPERFAMILY SSF51735 116 263 8.01E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3612 0c1e95a393d21bbce363310a48451af9 332 SMART SM00829 11 329 5.3E-30 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_3612 0c1e95a393d21bbce363310a48451af9 332 Gene3D G3DSA:3.40.50.720 124 300 5.9E-102 T 13-10-2018 BMD_3612 0c1e95a393d21bbce363310a48451af9 332 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 90 4.0E-9 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_3612 0c1e95a393d21bbce363310a48451af9 332 SUPERFAMILY SSF50129 1 148 2.28E-35 T 13-10-2018 IPR011032 GroES-like superfamily BMD_3612 0c1e95a393d21bbce363310a48451af9 332 Pfam PF13602 Zinc-binding dehydrogenase 186 329 3.9E-33 T 13-10-2018 BMD_3612 0c1e95a393d21bbce363310a48451af9 332 Gene3D G3DSA:3.90.180.10 16 329 5.9E-102 T 13-10-2018 BMD_3612 0c1e95a393d21bbce363310a48451af9 332 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 144 165 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 SUPERFAMILY SSF103473 3 380 1.31E-56 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 Gene3D G3DSA:1.20.1250.20 199 386 1.2E-18 T 13-10-2018 BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 Gene3D G3DSA:1.20.1250.20 5 198 3.4E-29 T 13-10-2018 BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 Pfam PF07690 Major Facilitator Superfamily 8 319 1.5E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 PRINTS PR01035 Tetracycline resistance protein signature 40 59 3.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 PRINTS PR01035 Tetracycline resistance protein signature 158 178 3.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 PRINTS PR01035 Tetracycline resistance protein signature 10 26 3.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2574 a3e2df0d3848811287784c0d9b7a5e22 389 PRINTS PR01035 Tetracycline resistance protein signature 98 119 3.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 SUPERFAMILY SSF50494 86 303 3.39E-56 T 13-10-2018 IPR009003 Peptidase S1, PA clan BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 Pfam PF13180 PDZ domain 307 405 1.4E-19 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 Gene3D G3DSA:2.40.10.10 187 306 6.5E-40 T 13-10-2018 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 Gene3D G3DSA:2.30.42.10 307 410 6.1E-24 T 13-10-2018 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 Gene3D G3DSA:2.40.10.10 73 185 3.5E-25 T 13-10-2018 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 SUPERFAMILY SSF50156 288 405 2.1E-19 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 PRINTS PR00834 HtrA/DegQ protease family signature 240 257 2.5E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 PRINTS PR00834 HtrA/DegQ protease family signature 196 220 2.5E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 PRINTS PR00834 HtrA/DegQ protease family signature 134 146 2.5E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 PRINTS PR00834 HtrA/DegQ protease family signature 262 279 2.5E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 PRINTS PR00834 HtrA/DegQ protease family signature 155 175 2.5E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 PRINTS PR00834 HtrA/DegQ protease family signature 353 365 2.5E-35 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 SMART SM00228 307 396 2.0E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_5240 19d4537131c8f58cac016ab6b17cd369 410 Pfam PF13365 Trypsin-like peptidase domain 122 269 2.2E-32 T 13-10-2018 BMD_2609 7aef80084381631bf1832fac65fc7610 345 PIRSF PIRSF001123 1 342 3.7E-43 T 13-10-2018 IPR008007 Peptidase M42 BMD_2609 7aef80084381631bf1832fac65fc7610 345 Pfam PF05343 M42 glutamyl aminopeptidase 45 333 1.1E-89 T 13-10-2018 IPR008007 Peptidase M42 BMD_2609 7aef80084381631bf1832fac65fc7610 345 SUPERFAMILY SSF53187 3 340 6.05E-57 T 13-10-2018 BMD_2609 7aef80084381631bf1832fac65fc7610 345 Gene3D G3DSA:3.40.630.10 10 338 1.7E-126 T 13-10-2018 BMD_2609 7aef80084381631bf1832fac65fc7610 345 Gene3D G3DSA:2.40.30.40 73 167 1.7E-126 T 13-10-2018 IPR023367 Peptidase M42, domain 2 BMD_2609 7aef80084381631bf1832fac65fc7610 345 SUPERFAMILY SSF101821 70 182 9.46E-32 T 13-10-2018 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 Pfam PF08544 GHMP kinases C terminal 204 281 1.5E-11 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 Hamap MF_00384 Homoserine kinase [thrB]. 9 298 29.115 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 89 100 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 PRINTS PR00958 Homoserine kinase signature 130 143 1.5E-39 T 13-10-2018 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 PRINTS PR00958 Homoserine kinase signature 14 29 1.5E-39 T 13-10-2018 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 PRINTS PR00958 Homoserine kinase signature 96 111 1.5E-39 T 13-10-2018 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 PRINTS PR00958 Homoserine kinase signature 168 185 1.5E-39 T 13-10-2018 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 PRINTS PR00958 Homoserine kinase signature 248 263 1.5E-39 T 13-10-2018 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 TIGRFAM TIGR00191 thrB: homoserine kinase 7 298 9.2E-89 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 PIRSF PIRSF000676 3 300 7.1E-87 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 Pfam PF00288 GHMP kinases N terminal domain 82 143 5.7E-14 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 SUPERFAMILY SSF54211 7 157 5.84E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 Gene3D G3DSA:3.30.70.890 162 266 4.5E-78 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 Gene3D G3DSA:3.30.230.10 9 161 4.5E-78 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_4960 6c917b9f2579fe3534f81433800b15a0 304 SUPERFAMILY SSF55060 163 283 4.17E-32 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BMD_4273 6ee24eeb9ff2e0ccd9e98da5158a0f2a 127 Pfam PF11877 Protein of unknown function (DUF3397) 10 118 3.8E-25 T 13-10-2018 IPR024515 Protein of unknown function DUF3397 BMD_0393 26655ba1e7c2625e6098824a943b94ad 38 Pfam PF14152 YfhE-like protein 3 38 3.3E-21 T 13-10-2018 IPR025437 YfhE-like protein BMD_0854 5185f1fdf1a6deda59d958604fafd321 223 SUPERFAMILY SSF52172 1 130 1.42E-30 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0854 5185f1fdf1a6deda59d958604fafd321 223 PIRSF PIRSF006171 1 223 2.0E-74 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 BMD_0854 5185f1fdf1a6deda59d958604fafd321 223 Pfam PF00072 Response regulator receiver domain 4 115 3.6E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0854 5185f1fdf1a6deda59d958604fafd321 223 SMART SM00448 2 115 9.3E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0854 5185f1fdf1a6deda59d958604fafd321 223 Gene3D G3DSA:3.40.50.12740 2 207 1.1E-30 T 13-10-2018 BMD_0854 5185f1fdf1a6deda59d958604fafd321 223 Pfam PF08279 HTH domain 173 221 6.5E-6 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 4 880 0.0 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Gene3D G3DSA:3.40.50.300 560 865 1.3E-106 T 13-10-2018 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 4 874 25.627 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 679 695 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Pfam PF01624 MutS domain I 5 116 1.2E-45 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Gene3D G3DSA:1.10.1420.10 390 526 3.9E-103 T 13-10-2018 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Pfam PF05190 MutS family domain IV 418 509 6.6E-31 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 SUPERFAMILY SSF48334 256 555 6.28E-89 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Pfam PF05192 MutS domain III 261 550 1.2E-42 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 SUPERFAMILY SSF53150 114 269 1.7E-32 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Pfam PF05188 MutS domain II 125 242 4.2E-11 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 SUPERFAMILY SSF55271 2 112 5.62E-42 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Gene3D G3DSA:3.40.1170.10 1 117 7.7E-48 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 SUPERFAMILY SSF52540 558 789 7.72E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 SMART SM00533 273 581 8.0E-108 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Gene3D G3DSA:1.10.1420.10 255 551 3.9E-103 T 13-10-2018 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 PIRSF PIRSF037677 1 160 3.6E-32 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 PIRSF PIRSF037677 159 845 4.1E-136 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 SMART SM00534 598 785 8.1E-120 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Gene3D G3DSA:3.30.420.110 124 250 8.4E-15 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 BMD_4095 1bb7854f4c013c2ca3613474e5875b75 885 Pfam PF00488 MutS domain V 602 788 1.2E-84 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BMD_5056 787c3d17948c01e728566dac68ff7f79 194 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 61 74 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BMD_5056 787c3d17948c01e728566dac68ff7f79 194 SUPERFAMILY SSF54211 3 86 3.04E-32 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_5056 787c3d17948c01e728566dac68ff7f79 194 Gene3D G3DSA:3.30.230.40 90 194 3.5E-39 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 BMD_5056 787c3d17948c01e728566dac68ff7f79 194 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 31 174 1.1E-63 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BMD_5056 787c3d17948c01e728566dac68ff7f79 194 SUPERFAMILY SSF54211 87 179 3.54E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_5056 787c3d17948c01e728566dac68ff7f79 194 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 156 168 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BMD_5056 787c3d17948c01e728566dac68ff7f79 194 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 194 42.028 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BMD_5056 787c3d17948c01e728566dac68ff7f79 194 Gene3D G3DSA:3.30.230.40 1 89 1.8E-37 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 BMD_2073 408e95aecab7f85eb3166349afb9ca61 295 Gene3D G3DSA:3.90.550.10 1 290 4.4E-89 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2073 408e95aecab7f85eb3166349afb9ca61 295 Pfam PF00483 Nucleotidyl transferase 5 265 1.5E-34 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_2073 408e95aecab7f85eb3166349afb9ca61 295 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 3 263 1.7E-120 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BMD_2073 408e95aecab7f85eb3166349afb9ca61 295 SUPERFAMILY SSF53448 2 267 8.14E-66 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 PIRSF PIRSF001553 1 291 1.7E-131 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 Pfam PF02629 CoA binding domain 6 99 2.5E-29 T 13-10-2018 IPR003781 CoA-binding GO:0048037 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 SUPERFAMILY SSF51735 1 122 1.03E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 SMART SM00881 4 100 9.4E-32 T 13-10-2018 IPR003781 CoA-binding GO:0048037 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.8E-41 T 13-10-2018 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 2.8E-41 T 13-10-2018 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 2.8E-41 T 13-10-2018 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 2.8E-41 T 13-10-2018 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 288 7.6E-146 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 Gene3D G3DSA:3.40.50.261 124 289 2.1E-71 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.37 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 Pfam PF00549 CoA-ligase 151 265 5.2E-18 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 Gene3D G3DSA:3.40.50.720 1 123 2.0E-50 T 13-10-2018 BMD_4191 93a7919b5966bdf947dc098a076d7d13 300 SUPERFAMILY SSF52210 123 287 6.15E-54 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 Pfam PF00571 CBS domain 350 395 5.7E-5 T 13-10-2018 IPR000644 CBS domain BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 SMART SM00382 60 257 1.4E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 Gene3D G3DSA:3.40.50.300 23 276 8.5E-68 T 13-10-2018 BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 SUPERFAMILY SSF54631 295 397 1.9E-13 T 13-10-2018 BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 Pfam PF00005 ABC transporter 53 199 3.0E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 Gene3D G3DSA:3.10.580.10 291 400 1.1E-12 T 13-10-2018 BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 44 399 1.3E-104 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 BMD_1523 df60c5e82b314a6699fc6bbeb621460b 417 SUPERFAMILY SSF52540 47 278 2.82E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 Gene3D G3DSA:3.40.1190.10 30 239 5.6E-16 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 Pfam PF08245 Mur ligase middle domain 37 238 3.3E-9 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 SUPERFAMILY SSF53623 32 236 5.63E-17 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 TIGRFAM TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB 2 383 1.5E-165 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 258 275 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 77 95 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 196 213 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 34 50 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 293 308 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 111 126 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 140 155 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 362 378 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 162 179 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1003 97ef65a67d6719b71c7852bf09d0e746 393 PRINTS PR01758 Capsule biosynthesis protein CapB signature 57 74 6.2E-88 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_3683 281c649a522ffdfa1b7304305dd5c44e 432 TIGRFAM TIGR00784 citMHS: citrate transporter 1 432 3.1E-176 T 13-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 BMD_3683 281c649a522ffdfa1b7304305dd5c44e 432 Pfam PF03600 Citrate transporter 13 377 7.5E-50 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 Gene3D G3DSA:3.40.50.620 24 621 3.8E-264 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 SUPERFAMILY SSF50677 203 393 6.07E-63 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 Pfam PF06827 Zinc finger found in FPG and IleRS 884 913 3.4E-9 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 915 21.303 T 13-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 57 68 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 Pfam PF08264 Anticodon-binding domain of tRNA 677 830 2.0E-29 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 Gene3D G3DSA:1.10.730.20 632 917 2.1E-105 T 13-10-2018 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 633 1.1E-221 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 SUPERFAMILY SSF52374 1 640 1.89E-154 T 13-10-2018 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 13 833 0.0 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 SUPERFAMILY SSF47323 644 916 1.59E-81 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 Gene3D G3DSA:3.90.740.10 194 398 3.8E-264 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 553 562 7.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 391 406 7.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 519 532 7.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 50 61 7.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_4249 98eb5c08df47c98c293bb8e34ab737d1 921 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 229 252 7.6E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BMD_2001 ba06ebf4331f2a0eb5d07d087a34a4d4 317 PRINTS PR00419 Adrenodoxin reductase family signature 3 25 3.9E-5 T 13-10-2018 BMD_2001 ba06ebf4331f2a0eb5d07d087a34a4d4 317 PRINTS PR00419 Adrenodoxin reductase family signature 26 39 3.9E-5 T 13-10-2018 BMD_2001 ba06ebf4331f2a0eb5d07d087a34a4d4 317 Pfam PF01593 Flavin containing amine oxidoreductase 91 312 6.1E-12 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_2001 ba06ebf4331f2a0eb5d07d087a34a4d4 317 SUPERFAMILY SSF51905 1 313 1.68E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2001 ba06ebf4331f2a0eb5d07d087a34a4d4 317 Gene3D G3DSA:3.90.660.10 42 269 1.2E-72 T 13-10-2018 BMD_2001 ba06ebf4331f2a0eb5d07d087a34a4d4 317 Pfam PF13450 NAD(P)-binding Rossmann-like domain 6 60 9.3E-17 T 13-10-2018 BMD_2001 ba06ebf4331f2a0eb5d07d087a34a4d4 317 Gene3D G3DSA:3.50.50.60 4 310 1.2E-72 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2228 1548537d7073cb2a49f66670a157cbfd 159 Gene3D G3DSA:1.10.10.10 92 155 1.2E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2228 1548537d7073cb2a49f66670a157cbfd 159 SUPERFAMILY SSF88659 92 153 7.85E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_2228 1548537d7073cb2a49f66670a157cbfd 159 SUPERFAMILY SSF88946 6 84 1.02E-11 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2228 1548537d7073cb2a49f66670a157cbfd 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 149 6.6E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_2228 1548537d7073cb2a49f66670a157cbfd 159 Gene3D G3DSA:1.10.1740.10 1 74 1.0E-10 T 13-10-2018 BMD_2228 1548537d7073cb2a49f66670a157cbfd 159 Pfam PF04542 Sigma-70 region 2 7 68 1.5E-6 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2228 1548537d7073cb2a49f66670a157cbfd 159 Pfam PF08281 Sigma-70, region 4 102 149 4.7E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_4244 42ed6c8c1747a337c67b7609887d03b9 435 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 337 357 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BMD_4244 42ed6c8c1747a337c67b7609887d03b9 435 Pfam PF00860 Permease family 20 389 4.0E-108 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_4244 42ed6c8c1747a337c67b7609887d03b9 435 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 15 414 2.1E-130 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BMD_3809 603dadd6cde22e10f90a683f59aea752 37 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 6 28 2.3E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3809 603dadd6cde22e10f90a683f59aea752 37 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 9 31 9.2E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3583 e657cba8c5b41cfae0afa5bcb90c5356 221 Gene3D G3DSA:2.60.120.1460 8 203 2.8E-39 T 13-10-2018 BMD_3583 e657cba8c5b41cfae0afa5bcb90c5356 221 SUPERFAMILY SSF46785 133 201 6.91E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3583 e657cba8c5b41cfae0afa5bcb90c5356 221 SUPERFAMILY SSF51206 8 129 8.25E-22 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like BMD_3583 e657cba8c5b41cfae0afa5bcb90c5356 221 Pfam PF13545 Crp-like helix-turn-helix domain 135 200 1.3E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BMD_3583 e657cba8c5b41cfae0afa5bcb90c5356 221 Pfam PF00027 Cyclic nucleotide-binding domain 19 103 2.7E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain BMD_4101 aa2541e60833c68029a2ad4813300871 585 Gene3D G3DSA:3.40.920.10 1 186 9.7E-31 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 BMD_4101 aa2541e60833c68029a2ad4813300871 585 SUPERFAMILY SSF53323 1 221 3.01E-44 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 BMD_4101 aa2541e60833c68029a2ad4813300871 585 SUPERFAMILY SSF52518 197 458 1.73E-73 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4101 aa2541e60833c68029a2ad4813300871 585 Gene3D G3DSA:3.40.50.920 468 580 5.4E-28 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_4101 aa2541e60833c68029a2ad4813300871 585 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 211 451 2.3E-61 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 BMD_4101 aa2541e60833c68029a2ad4813300871 585 Gene3D G3DSA:3.40.50.970 187 387 1.6E-76 T 13-10-2018 BMD_4101 aa2541e60833c68029a2ad4813300871 585 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 14 175 9.7E-41 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 BMD_4101 aa2541e60833c68029a2ad4813300871 585 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 477 570 3.2E-10 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II BMD_4101 aa2541e60833c68029a2ad4813300871 585 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 5 573 1.1E-214 T 13-10-2018 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969 BMD_4101 aa2541e60833c68029a2ad4813300871 585 SUPERFAMILY SSF52922 474 578 5.02E-22 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_2355 800f02536bf8c7253541e4dab3814028 89 ProSitePatterns PS00527 Ribosomal protein S14 signature. 51 73 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_2355 800f02536bf8c7253541e4dab3814028 89 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 89 26.423 T 13-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid BMD_2355 800f02536bf8c7253541e4dab3814028 89 SUPERFAMILY SSF57716 2 89 5.77E-35 T 13-10-2018 BMD_2355 800f02536bf8c7253541e4dab3814028 89 Gene3D G3DSA:4.10.830.10 28 89 1.4E-27 T 13-10-2018 BMD_2355 800f02536bf8c7253541e4dab3814028 89 Pfam PF00253 Ribosomal protein S14p/S29e 36 88 1.3E-30 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_2782 34d357458bebe452e12fdfa5633df7da 550 PIRSF PIRSF006060 1 539 8.2E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2782 34d357458bebe452e12fdfa5633df7da 550 Pfam PF13520 Amino acid permease 15 431 5.2E-49 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2782 34d357458bebe452e12fdfa5633df7da 550 Gene3D G3DSA:1.20.1740.10 7 472 8.4E-78 T 13-10-2018 BMD_0110 9ce9441201e8acfa4bb5d7c705f4c895 159 Pfam PF02542 YgbB family 3 156 8.9E-68 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BMD_0110 9ce9441201e8acfa4bb5d7c705f4c895 159 Gene3D G3DSA:3.30.1330.50 1 159 1.6E-71 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BMD_0110 9ce9441201e8acfa4bb5d7c705f4c895 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4 157 2.3E-72 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BMD_0110 9ce9441201e8acfa4bb5d7c705f4c895 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 3 158 37.697 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BMD_0110 9ce9441201e8acfa4bb5d7c705f4c895 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BMD_0110 9ce9441201e8acfa4bb5d7c705f4c895 159 SUPERFAMILY SSF69765 1 158 4.19E-68 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 200 332 3.6E-46 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 112 604 6.2E-250 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 Gene3D G3DSA:1.20.58.760 414 617 6.8E-78 T 13-10-2018 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 SUPERFAMILY SSF140990 414 610 8.63E-75 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 Pfam PF01434 Peptidase family M41 394 603 1.8E-89 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 SUPERFAMILY SSF52540 155 404 1.58E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 SMART SM00382 196 335 3.6E-26 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 Pfam PF06480 FtsH Extracellular 9 105 4.9E-8 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 Gene3D G3DSA:3.40.50.300 150 333 2.4E-72 T 13-10-2018 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 Gene3D G3DSA:1.10.8.60 334 411 5.6E-30 T 13-10-2018 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 ProSitePatterns PS00674 AAA-protein family signature. 303 321 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 BMD_0089 9d2e1344bec68f85d45a52142fc17086 636 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 612 39.017 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 BMD_3276 b2ddc1632dee532e0fbe960023a21206 224 Gene3D G3DSA:1.10.10.10 128 224 4.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3276 b2ddc1632dee532e0fbe960023a21206 224 SMART SM00448 2 112 4.3E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3276 b2ddc1632dee532e0fbe960023a21206 224 Pfam PF00072 Response regulator receiver domain 4 112 1.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3276 b2ddc1632dee532e0fbe960023a21206 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 219 3.7E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3276 b2ddc1632dee532e0fbe960023a21206 224 SUPERFAMILY SSF52172 1 173 3.08E-42 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3276 b2ddc1632dee532e0fbe960023a21206 224 Gene3D G3DSA:3.40.50.2300 1 127 1.6E-37 T 13-10-2018 BMD_3276 b2ddc1632dee532e0fbe960023a21206 224 SMART SM00862 145 219 8.1E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2891 d2ac8a174979fea1711aa346e5c303b0 483 Gene3D G3DSA:3.30.465.40 11 241 1.7E-68 T 13-10-2018 BMD_2891 d2ac8a174979fea1711aa346e5c303b0 483 Pfam PF01565 FAD binding domain 46 184 4.1E-40 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BMD_2891 d2ac8a174979fea1711aa346e5c303b0 483 SUPERFAMILY SSF55103 225 473 2.13E-63 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BMD_2891 d2ac8a174979fea1711aa346e5c303b0 483 Gene3D G3DSA:3.30.70.2740 343 423 4.8E-8 T 13-10-2018 BMD_2891 d2ac8a174979fea1711aa346e5c303b0 483 Gene3D G3DSA:1.10.45.10 424 463 1.5E-5 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 BMD_2891 d2ac8a174979fea1711aa346e5c303b0 483 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 463 4.8E-60 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 BMD_2891 d2ac8a174979fea1711aa346e5c303b0 483 SUPERFAMILY SSF56176 12 222 2.01E-69 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_2619 b21ee16a094f68f37550aa4116f81f62 318 Pfam PF03547 Membrane transport protein 10 158 6.3E-25 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BMD_2619 b21ee16a094f68f37550aa4116f81f62 318 Pfam PF03547 Membrane transport protein 164 313 4.0E-21 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BMD_0068 13063c6c6904030e6a10fd60da052530 317 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 10 317 51.619 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 BMD_0068 13063c6c6904030e6a10fd60da052530 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 10 126 7.5E-52 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BMD_0068 13063c6c6904030e6a10fd60da052530 317 Gene3D G3DSA:3.40.50.2020 153 293 1.3E-125 T 13-10-2018 BMD_0068 13063c6c6904030e6a10fd60da052530 317 Gene3D G3DSA:3.40.50.2020 13 305 1.3E-125 T 13-10-2018 BMD_0068 13063c6c6904030e6a10fd60da052530 317 SUPERFAMILY SSF53271 75 308 1.63E-66 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_0068 13063c6c6904030e6a10fd60da052530 317 SMART SM01400 10 126 1.8E-80 T 13-10-2018 BMD_0068 13063c6c6904030e6a10fd60da052530 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 11 317 1.1E-130 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BMD_0068 13063c6c6904030e6a10fd60da052530 317 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 134 149 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 BMD_0068 13063c6c6904030e6a10fd60da052530 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 208 316 5.2E-23 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 235 394 1.4E-42 T 13-10-2018 IPR000160 GGDEF domain BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 Pfam PF00072 Response regulator receiver domain 109 215 3.1E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 Pfam PF00072 Response regulator receiver domain 409 527 1.0E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 Gene3D G3DSA:3.30.70.270 232 401 3.6E-48 T 13-10-2018 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 SUPERFAMILY SSF47226 9 95 1.83E-5 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 SMART SM00448 107 220 4.1E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 SMART SM00448 406 527 7.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 SMART SM00267 223 395 6.1E-48 T 13-10-2018 IPR000160 GGDEF domain BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 SUPERFAMILY SSF55073 239 394 1.1E-43 T 13-10-2018 IPR029787 Nucleotide cyclase BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 SUPERFAMILY SSF52172 404 532 9.25E-30 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 SUPERFAMILY SSF52172 107 236 8.82E-29 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 Gene3D G3DSA:3.40.50.2300 94 231 4.6E-27 T 13-10-2018 BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 390 2.7E-39 T 13-10-2018 IPR000160 GGDEF domain BMD_0935 f0e8adce71519294a0f1efefc0366e74 535 Gene3D G3DSA:3.40.50.2300 402 535 1.4E-30 T 13-10-2018 BMD_1660 4166676f13863348c22d1be6cf1e6e99 319 SUPERFAMILY SSF51735 7 186 1.71E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1660 4166676f13863348c22d1be6cf1e6e99 319 PIRSF PIRSF000105 2 319 6.4E-82 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 BMD_1660 4166676f13863348c22d1be6cf1e6e99 319 Gene3D G3DSA:1.10.1040.10 192 314 2.7E-36 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_1660 4166676f13863348c22d1be6cf1e6e99 319 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 187 1.1E-54 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_1660 4166676f13863348c22d1be6cf1e6e99 319 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 192 288 6.4E-19 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_1660 4166676f13863348c22d1be6cf1e6e99 319 SUPERFAMILY SSF48179 190 288 1.11E-21 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_1660 4166676f13863348c22d1be6cf1e6e99 319 Gene3D G3DSA:3.40.50.720 4 190 4.2E-55 T 13-10-2018 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 Gene3D G3DSA:3.40.50.720 134 336 2.4E-153 T 13-10-2018 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 SUPERFAMILY SSF51735 141 348 1.77E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 SMART SM00839 144 351 4.1E-71 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 19 131 6.0E-27 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 Gene3D G3DSA:3.40.50.10860 10 343 2.4E-153 T 13-10-2018 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 SUPERFAMILY SSF53223 4 143 9.6E-49 T 13-10-2018 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 PIRSF PIRSF000188 1 353 1.3E-166 T 13-10-2018 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 213 346 6.8E-11 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 148 200 2.2E-6 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 74 87 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 66 80 1.1E-22 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 132 154 1.1E-22 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 286 297 1.1E-22 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4428 deca9a942808fc883be9b9f43d8fdfb4 367 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 176 196 1.1E-22 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 Pfam PF13377 Periplasmic binding protein-like domain 196 356 1.9E-28 T 13-10-2018 BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 SUPERFAMILY SSF53822 82 359 3.53E-59 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 Gene3D G3DSA:3.40.50.2300 84 349 6.8E-79 T 13-10-2018 BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 SMART SM00345 8 67 3.7E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 Gene3D G3DSA:1.10.10.10 1 68 9.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 SUPERFAMILY SSF46785 3 71 1.18E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 3.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 3.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 Gene3D G3DSA:3.40.50.2300 187 352 6.8E-79 T 13-10-2018 BMD_3533 45d97cca7bac3a338bb84d56b2d562a7 368 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 1.2E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2611 7d5e0ba6ec63d15328cf75bf747fb1b0 451 Pfam PF05525 Branched-chain amino acid transport protein 10 431 3.7E-165 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BMD_2611 7d5e0ba6ec63d15328cf75bf747fb1b0 451 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 421 7.2E-159 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 ProSitePatterns PS01053 Arginase family signature. 232 253 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 Pfam PF00491 Arginase family 30 300 4.1E-84 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 TIGRFAM TIGR01230 agmatinase: agmatinase 19 299 2.2E-64 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 PRINTS PR00116 Arginase signature 229 258 3.0E-12 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 PRINTS PR00116 Arginase signature 116 131 3.0E-12 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 Gene3D G3DSA:3.40.800.10 2 310 5.5E-101 T 13-10-2018 BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 SUPERFAMILY SSF52768 19 304 1.4E-92 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_0865 fbb62e0a613f5cc9ec3e0ca170becfb6 318 PIRSF PIRSF036979 9 308 4.4E-90 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_4386 b9873d2f498f200daccf6ac722ef6f50 214 PIRSF PIRSF038973 1 212 5.7E-76 T 13-10-2018 IPR014196 Stage II sporulation protein M BMD_4386 b9873d2f498f200daccf6ac722ef6f50 214 TIGRFAM TIGR02831 spo_II_M: stage II sporulation protein M 11 206 2.1E-77 T 13-10-2018 IPR014196 Stage II sporulation protein M BMD_4386 b9873d2f498f200daccf6ac722ef6f50 214 Pfam PF01944 Stage II sporulation protein M 25 202 1.7E-28 T 13-10-2018 IPR002798 Stage II sporulation protein M-like BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 SUPERFAMILY SSF51011 480 559 2.48E-18 T 13-10-2018 BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 Pfam PF16657 Maltogenic Amylase, C-terminal domain 480 537 3.1E-6 T 13-10-2018 IPR032091 Maltogenic Amylase, C-terminal BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 Gene3D G3DSA:3.90.400.10 105 175 1.4E-201 T 13-10-2018 BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 Pfam PF00128 Alpha amylase, catalytic domain 28 377 2.6E-130 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 Gene3D G3DSA:2.60.40.1180 481 561 8.7E-26 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 Gene3D G3DSA:3.20.20.80 5 472 1.4E-201 T 13-10-2018 BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 SUPERFAMILY SSF51445 4 477 6.34E-159 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 5 558 4.3E-271 T 13-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 BMD_0958 8a7d084d47fa698cc929dae178757b8d 561 SMART SM00642 13 419 6.8E-159 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 500 7.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 481 7.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 467 7.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 519 7.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Gene3D G3DSA:3.30.450.20 194 308 1.9E-23 T 13-10-2018 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 317 370 4.9E-12 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Gene3D G3DSA:1.10.287.130 309 371 1.9E-7 T 13-10-2018 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 SUPERFAMILY SSF103190 33 163 2.47E-39 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 SUPERFAMILY SSF55874 392 520 7.73E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Pfam PF17203 Single cache domain 3 33 163 6.9E-20 T 13-10-2018 IPR033463 Single cache domain 3 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 SMART SM00387 414 522 1.0E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Pfam PF00989 PAS fold 207 278 7.2E-7 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 SMART SM00091 207 275 1.6E-4 T 13-10-2018 IPR000014 PAS domain BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Gene3D G3DSA:3.30.450.20 27 166 8.7E-44 T 13-10-2018 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Gene3D G3DSA:3.30.565.10 372 520 2.5E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 SUPERFAMILY SSF55890 318 369 1.18E-14 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 SUPERFAMILY SSF55785 206 306 9.68E-8 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0340 35dee63eae6d3d9b55163af11147eaff 528 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 521 1.8E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1427 b715e0f3f7f0f1219d97fe31fda309e5 415 Gene3D G3DSA:3.40.190.10 51 355 6.1E-73 T 13-10-2018 BMD_1427 b715e0f3f7f0f1219d97fe31fda309e5 415 Gene3D G3DSA:3.40.190.10 144 402 6.1E-73 T 13-10-2018 BMD_1427 b715e0f3f7f0f1219d97fe31fda309e5 415 Pfam PF01547 Bacterial extracellular solute-binding protein 47 332 1.5E-32 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_1427 b715e0f3f7f0f1219d97fe31fda309e5 415 SUPERFAMILY SSF53850 16 413 1.31E-72 T 13-10-2018 BMD_5000 97ff7346c2de6a60add96782b51a8c10 328 Gene3D G3DSA:3.40.50.1980 153 328 8.5E-65 T 13-10-2018 BMD_5000 97ff7346c2de6a60add96782b51a8c10 328 Pfam PF01497 Periplasmic binding protein 66 299 1.9E-30 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain BMD_5000 97ff7346c2de6a60add96782b51a8c10 328 Gene3D G3DSA:3.40.50.1980 43 151 2.0E-35 T 13-10-2018 BMD_5000 97ff7346c2de6a60add96782b51a8c10 328 SUPERFAMILY SSF53807 49 319 1.75E-67 T 13-10-2018 BMD_0659 efff16a472d771204e59c7603b320534 282 Pfam PF00494 Squalene/phytoene synthase 18 264 2.1E-66 T 13-10-2018 BMD_0659 efff16a472d771204e59c7603b320534 282 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 158 183 - T 13-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 BMD_0659 efff16a472d771204e59c7603b320534 282 SUPERFAMILY SSF48576 9 276 7.91E-75 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_0659 efff16a472d771204e59c7603b320534 282 ProSitePatterns PS01044 Squalene and phytoene synthases signature 1. 127 142 - T 13-10-2018 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 Reactome: R-HSA-191273|Reactome: R-HSA-1989781|Reactome: R-HSA-2426168 BMD_0659 efff16a472d771204e59c7603b320534 282 Gene3D G3DSA:1.10.600.10 2 279 1.9E-97 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1172 6.3E-66 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 Gene3D G3DSA:3.30.70.1620 579 668 4.5E-66 T 13-10-2018 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 PIRSF PIRSF005719 1 1185 0.0 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 SMART SM00968 519 638 4.5E-40 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 Pfam PF06470 SMC proteins Flexible Hinge Domain 519 638 1.0E-29 T 13-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1181 24.358 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 SUPERFAMILY SSF75553 484 687 1.83E-54 T 13-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 Gene3D G3DSA:3.40.50.300 964 1186 2.5E-55 T 13-10-2018 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 Gene3D G3DSA:3.40.50.300 1 245 2.4E-60 T 13-10-2018 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 SUPERFAMILY SSF52540 1 1164 4.47E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1179 0.0 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 BMD_4205 3e6e230d2ef9c7b4e2607ef7f79eefa3 1186 Gene3D G3DSA:1.20.1060.20 495 680 4.5E-66 T 13-10-2018 BMD_4116 46f886cedc7405d29605212cbd8b6072 353 Pfam PF02653 Branched-chain amino acid transport system / permease component 58 334 1.5E-41 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 Gene3D G3DSA:3.30.70.20 182 256 1.3E-5 T 13-10-2018 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 Pfam PF13484 4Fe-4S double cluster binding domain 188 250 1.2E-15 T 13-10-2018 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 Gene3D G3DSA:1.25.10.10 298 375 9.7E-13 T 13-10-2018 IPR011989 Armadillo-like helical BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 SMART SM00567 E-Z type HEAT repeats 330 359 6.9E-5 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 SMART SM00567 E-Z type HEAT repeats 298 327 9.2 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 SUPERFAMILY SSF48371 296 373 8.38E-13 T 13-10-2018 IPR016024 Armadillo-type fold BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 10 342 2.5E-131 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 3 309 43.259 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 Pfam PF13646 HEAT repeats 300 366 1.1E-12 T 13-10-2018 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 Pfam PF08331 Domain of unknown function (DUF1730) 57 135 1.9E-19 T 13-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 BMD_0441 efd059e1ad17f337f32f4189b5c46521 378 SUPERFAMILY SSF54862 164 250 2.18E-15 T 13-10-2018 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 Gene3D G3DSA:3.40.50.720 1 170 4.7E-74 T 13-10-2018 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 Gene3D G3DSA:3.90.110.10 171 442 2.1E-101 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 SUPERFAMILY SSF56327 173 439 6.68E-96 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 SUPERFAMILY SSF51735 4 168 8.34E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 412 2.9E-46 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 172 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 Pfam PF02056 Family 4 glycosyl hydrolase 6 187 1.2E-75 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 6.7E-54 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 6.7E-54 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 6.7E-54 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 6.7E-54 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 6.7E-54 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 6.7E-54 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_0773 25bfa0ceaa851d56285f0351226b640e 442 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 6.7E-54 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_4991 682758d86842f8ce68b57c2979eea277 392 SUPERFAMILY SSF53901 269 390 5.01E-42 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4991 682758d86842f8ce68b57c2979eea277 392 Pfam PF02803 Thiolase, C-terminal domain 269 389 4.4E-48 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BMD_4991 682758d86842f8ce68b57c2979eea277 392 Pfam PF00108 Thiolase, N-terminal domain 5 260 4.2E-76 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BMD_4991 682758d86842f8ce68b57c2979eea277 392 Gene3D G3DSA:3.40.47.10 5 274 1.1E-147 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4991 682758d86842f8ce68b57c2979eea277 392 PIRSF PIRSF000429 1 392 4.0E-130 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_4991 682758d86842f8ce68b57c2979eea277 392 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BMD_4991 682758d86842f8ce68b57c2979eea277 392 Gene3D G3DSA:3.40.47.10 131 387 1.1E-147 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4991 682758d86842f8ce68b57c2979eea277 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 1.7E-139 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_4991 682758d86842f8ce68b57c2979eea277 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BMD_4991 682758d86842f8ce68b57c2979eea277 392 SUPERFAMILY SSF53901 1 264 7.52E-74 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4991 682758d86842f8ce68b57c2979eea277 392 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 BMD_2989 154af805215fb924f751455a1adb3cb8 569 ProSitePatterns PS00145 Urease active site. 319 335 - T 13-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 SUPERFAMILY SSF51338 4 179 3.36E-59 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_2989 154af805215fb924f751455a1adb3cb8 569 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 121 3.0E-55 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 403 418 4.8E-35 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 297 314 4.8E-35 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 336 352 4.8E-35 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 429 442 4.8E-35 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 Hamap MF_01953 Urease subunit alpha [ureC]. 3 569 58.058 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 569 0.0 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 Gene3D G3DSA:3.20.20.140 131 569 1.6E-295 T 13-10-2018 BMD_2989 154af805215fb924f751455a1adb3cb8 569 SUPERFAMILY SSF51556 131 569 8.17E-202 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_2989 154af805215fb924f751455a1adb3cb8 569 SUPERFAMILY SSF51338 424 479 2.45E-6 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_2989 154af805215fb924f751455a1adb3cb8 569 Gene3D G3DSA:2.30.40.10 5 482 1.6E-295 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_2989 154af805215fb924f751455a1adb3cb8 569 ProSitePatterns PS01120 Urease nickel ligands signature. 129 142 - T 13-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BMD_2989 154af805215fb924f751455a1adb3cb8 569 Pfam PF01979 Amidohydrolase family 127 455 7.0E-81 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 SUPERFAMILY SSF53335 85 263 3.38E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 78 90 1.6E-25 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 146 162 1.6E-25 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 220 234 1.6E-25 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 239 262 1.6E-25 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 PRINTS PR00996 Glutamate methyltransferase family signature 114 134 1.6E-25 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 Pfam PF01739 CheR methyltransferase, SAM binding domain 85 265 1.1E-41 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 Gene3D G3DSA:3.40.50.150 84 284 8.4E-57 T 13-10-2018 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 Pfam PF03705 CheR methyltransferase, all-alpha domain 21 67 7.6E-10 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 SUPERFAMILY SSF47757 17 84 1.57E-7 T 13-10-2018 BMD_1528 47394fde409012272a6a18b42f5fdcf8 284 SMART SM00138 19 282 1.7E-38 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BMD_0233 ebf53da48cc43477a951ffff9df1f5e1 149 Pfam PF10263 SprT-like family 9 97 1.7E-13 T 13-10-2018 IPR006640 SprT-like BMD_0233 ebf53da48cc43477a951ffff9df1f5e1 149 Pfam PF17283 SprT-like zinc ribbon domain 116 147 5.7E-7 T 13-10-2018 IPR035240 SprT-like, zinc ribbon domain BMD_0233 ebf53da48cc43477a951ffff9df1f5e1 149 SMART SM00731 4 149 1.0E-51 T 13-10-2018 IPR006640 SprT-like BMD_0233 ebf53da48cc43477a951ffff9df1f5e1 149 Hamap MF_00745 Protein SprT-like. 4 149 38.329 T 13-10-2018 IPR023524 Uncharacterised protein family SprT-like BMD_5189 07bef940a7f613894cfcde1db7a81701 247 Gene3D G3DSA:3.30.70.1030 1 136 8.6E-57 T 13-10-2018 BMD_5189 07bef940a7f613894cfcde1db7a81701 247 Pfam PF06778 Chlorite dismutase 33 235 2.2E-79 T 13-10-2018 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase BMD_5189 07bef940a7f613894cfcde1db7a81701 247 SUPERFAMILY SSF54909 2 246 4.83E-96 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_5189 07bef940a7f613894cfcde1db7a81701 247 Gene3D G3DSA:3.30.70.1100 137 247 1.1E-48 T 13-10-2018 BMD_5189 07bef940a7f613894cfcde1db7a81701 247 Hamap MF_01442 Putative heme-dependent peroxidase . 1 247 57.776 T 13-10-2018 IPR031332 Putative heme-dependent peroxidase, UPF0447 family BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 Gene3D G3DSA:3.40.50.2300 1 123 2.4E-36 T 13-10-2018 BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 SUPERFAMILY SSF46894 133 229 3.68E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 Pfam PF00072 Response regulator receiver domain 5 114 3.2E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 SMART SM00448 3 114 8.2E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 SUPERFAMILY SSF52172 2 128 2.85E-39 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 SMART SM00862 153 228 1.3E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 6.9E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_1764 b53f7d6d58fcd111bc6df76ae02f1f38 239 Gene3D G3DSA:1.10.10.10 130 239 3.2E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5215 e9a2dd724b652ac79258da61df60659f 565 SUPERFAMILY SSF52540 318 560 5.21E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5215 e9a2dd724b652ac79258da61df60659f 565 SMART SM00382 353 538 7.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5215 e9a2dd724b652ac79258da61df60659f 565 Pfam PF00664 ABC transporter transmembrane region 12 273 9.1E-26 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_5215 e9a2dd724b652ac79258da61df60659f 565 Gene3D G3DSA:3.40.50.300 313 563 4.3E-73 T 13-10-2018 BMD_5215 e9a2dd724b652ac79258da61df60659f 565 SUPERFAMILY SSF90123 7 477 1.31E-45 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_5215 e9a2dd724b652ac79258da61df60659f 565 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 8 533 1.7E-169 T 13-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 BMD_5215 e9a2dd724b652ac79258da61df60659f 565 ProSitePatterns PS00211 ABC transporters family signature. 464 478 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_5215 e9a2dd724b652ac79258da61df60659f 565 Pfam PF00005 ABC transporter 344 492 1.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_5215 e9a2dd724b652ac79258da61df60659f 565 Gene3D G3DSA:1.20.1560.10 4 312 1.2E-35 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_3860 84e6ef95b9d02054b22e194d7c172788 255 Pfam PF00005 ABC transporter 24 172 9.0E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3860 84e6ef95b9d02054b22e194d7c172788 255 SMART SM00382 33 228 1.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3860 84e6ef95b9d02054b22e194d7c172788 255 SUPERFAMILY SSF52540 5 225 5.01E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3860 84e6ef95b9d02054b22e194d7c172788 255 Gene3D G3DSA:3.40.50.300 1 247 8.1E-69 T 13-10-2018 BMD_0603 bbb76c0092a14c1fef11a911cd5fcf58 473 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 5 471 3.0E-130 T 13-10-2018 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BMD_0603 bbb76c0092a14c1fef11a911cd5fcf58 473 SUPERFAMILY SSF51905 6 464 5.7E-46 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0603 bbb76c0092a14c1fef11a911cd5fcf58 473 SUPERFAMILY SSF54373 309 417 3.76E-27 T 13-10-2018 BMD_0603 bbb76c0092a14c1fef11a911cd5fcf58 473 Pfam PF01593 Flavin containing amine oxidoreductase 15 464 2.6E-60 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_0603 bbb76c0092a14c1fef11a911cd5fcf58 473 Gene3D G3DSA:3.90.660.20 44 416 1.9E-141 T 13-10-2018 BMD_0603 bbb76c0092a14c1fef11a911cd5fcf58 473 Gene3D G3DSA:3.50.50.60 9 459 1.9E-141 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0603 bbb76c0092a14c1fef11a911cd5fcf58 473 Gene3D G3DSA:1.10.3110.10 110 203 1.9E-141 T 13-10-2018 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 SUPERFAMILY SSF52518 1 209 3.22E-34 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 Gene3D G3DSA:3.40.50.970 414 615 1.4E-44 T 13-10-2018 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 195 1.6E-34 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 640 2.4E-297 T 13-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 220 353 4.4E-32 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 Hamap MF_01669 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [iolD]. 1 644 60.03 T 13-10-2018 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes GO:0000287|GO:0016787|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 SUPERFAMILY SSF52467 185 369 1.46E-39 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 SUPERFAMILY SSF52518 417 633 1.71E-53 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 Gene3D G3DSA:3.40.50.1220 213 405 3.4E-35 T 13-10-2018 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 476 495 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 Gene3D G3DSA:3.40.50.970 1 212 6.6E-33 T 13-10-2018 BMD_0494 293e26e6aa61eb8c0dd248f00513b29d 644 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 440 599 5.6E-40 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_4646 4e3c6512fb6251f0603dc8a355f057cd 110 Pfam PF04327 Cysteine protease Prp 1 106 1.8E-25 T 13-10-2018 IPR007422 Cysteine protease Prp BMD_4646 4e3c6512fb6251f0603dc8a355f057cd 110 SUPERFAMILY SSF118010 1 108 5.49E-31 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily BMD_4646 4e3c6512fb6251f0603dc8a355f057cd 110 Gene3D G3DSA:3.30.70.1490 1 110 6.4E-34 T 13-10-2018 IPR036764 Cysteine protease Prp superfamily BMD_1346 d451da5f1122ebb40111090c47c073c8 442 Gene3D G3DSA:3.40.50.1010 2 150 1.2E-22 T 13-10-2018 BMD_1346 d451da5f1122ebb40111090c47c073c8 442 Gene3D G3DSA:3.40.50.300 231 441 3.2E-68 T 13-10-2018 BMD_1346 d451da5f1122ebb40111090c47c073c8 442 SUPERFAMILY SSF52540 22 422 3.19E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1346 d451da5f1122ebb40111090c47c073c8 442 Pfam PF02562 PhoH-like protein 233 438 3.0E-54 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 BMD_1346 d451da5f1122ebb40111090c47c073c8 442 SMART SM00670 3 135 4.0E-24 T 13-10-2018 IPR002716 PIN domain BMD_1346 d451da5f1122ebb40111090c47c073c8 442 Pfam PF13638 PIN domain 5 147 3.6E-34 T 13-10-2018 IPR002716 PIN domain BMD_2666 f0e76624b2907e42082451b3ccf6601a 170 SMART SM00248 72 101 0.1 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 BMD_2666 f0e76624b2907e42082451b3ccf6601a 170 SMART SM00248 104 133 0.013 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 BMD_2666 f0e76624b2907e42082451b3ccf6601a 170 SMART SM00248 38 67 0.21 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 BMD_2666 f0e76624b2907e42082451b3ccf6601a 170 Gene3D G3DSA:1.25.40.20 2 169 2.0E-31 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BMD_2666 f0e76624b2907e42082451b3ccf6601a 170 Pfam PF12796 Ankyrin repeats (3 copies) 13 68 1.8E-6 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain BMD_2666 f0e76624b2907e42082451b3ccf6601a 170 Pfam PF12796 Ankyrin repeats (3 copies) 74 133 6.7E-11 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain BMD_2666 f0e76624b2907e42082451b3ccf6601a 170 SUPERFAMILY SSF48403 10 163 1.48E-28 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 334 1.1E-131 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 SUPERFAMILY SSF51621 5 333 9.77E-82 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 Gene3D G3DSA:3.20.20.60 6 324 1.4E-123 T 13-10-2018 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 SUPERFAMILY SSF50800 65 160 7.85E-26 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 Gene3D G3DSA:2.40.33.10 66 160 1.4E-123 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 Pfam PF00224 Pyruvate kinase, barrel domain 6 331 3.5E-113 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 PRINTS PR01050 Pyruvate kinase family signature 179 193 4.9E-57 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 PRINTS PR01050 Pyruvate kinase family signature 210 236 4.9E-57 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 PRINTS PR01050 Pyruvate kinase family signature 306 322 4.9E-57 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 PRINTS PR01050 Pyruvate kinase family signature 54 70 4.9E-57 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 PRINTS PR01050 Pyruvate kinase family signature 287 305 4.9E-57 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 PRINTS PR01050 Pyruvate kinase family signature 237 261 4.9E-57 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_1526 adc008cb7070eec0ce26bb60395dc984 350 PRINTS PR01050 Pyruvate kinase family signature 262 286 4.9E-57 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BMD_3285 fb18da0a4b4398fe222b297ae198ca58 148 SUPERFAMILY SSF55729 5 138 6.48E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3285 fb18da0a4b4398fe222b297ae198ca58 148 Pfam PF00583 Acetyltransferase (GNAT) family 26 134 1.5E-13 T 13-10-2018 IPR000182 GNAT domain BMD_3285 fb18da0a4b4398fe222b297ae198ca58 148 Gene3D G3DSA:3.40.630.30 1 143 1.8E-24 T 13-10-2018 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 Gene3D G3DSA:1.20.140.10 233 375 2.6E-56 T 13-10-2018 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 PIRSF PIRSF016578 124 363 5.3E-16 T 13-10-2018 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 PIRSF PIRSF016578 5 117 0.03 T 13-10-2018 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 Gene3D G3DSA:1.10.540.10 2 118 1.3E-37 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 SUPERFAMILY SSF47203 225 375 4.19E-59 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 SUPERFAMILY SSF56645 3 239 2.75E-81 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 2.9E-33 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 214 5.4E-28 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 374 5.6E-51 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BMD_5169 aa66ad2600911d871702e1ddb68a1e28 375 Gene3D G3DSA:2.40.110.10 119 232 6.8E-48 T 13-10-2018 BMD_4329 300f5dc1ff9ca5477ae6b77b0f6d4486 350 TIGRFAM TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2 5 329 4.0E-115 T 13-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 BMD_4329 300f5dc1ff9ca5477ae6b77b0f6d4486 350 Gene3D G3DSA:3.20.20.70 2 350 2.4E-124 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4329 300f5dc1ff9ca5477ae6b77b0f6d4486 350 Pfam PF01070 FMN-dependent dehydrogenase 166 323 1.4E-19 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 BMD_4329 300f5dc1ff9ca5477ae6b77b0f6d4486 350 PIRSF PIRSF003314 1 340 2.1E-119 T 13-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 BMD_4329 300f5dc1ff9ca5477ae6b77b0f6d4486 350 Hamap MF_00354 Isopentenyl-diphosphate delta-isomerase [fni]. 3 330 36.959 T 13-10-2018 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent GO:0004452|GO:0005737|GO:0008299|GO:0010181 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922 BMD_4329 300f5dc1ff9ca5477ae6b77b0f6d4486 350 SMART SM01240 23 333 0.0034 T 13-10-2018 BMD_4329 300f5dc1ff9ca5477ae6b77b0f6d4486 350 SUPERFAMILY SSF51395 22 347 3.66E-82 T 13-10-2018 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 PIRSF PIRSF005917 3 290 4.7E-105 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 15 288 3.0E-85 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 93 104 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 Gene3D G3DSA:3.40.1010.10 1 122 2.2E-48 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 SUPERFAMILY SSF53790 14 231 7.46E-83 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 Gene3D G3DSA:3.30.950.10 123 238 4.9E-40 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 16 212 1.1E-27 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_0053 ea3bb2263e62a8cbbb5951f0c4df3e00 290 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 15 233 37.039 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BMD_3461 f7882943830554a3b887bca61355f20e 347 Gene3D G3DSA:3.30.360.10 144 266 4.2E-112 T 13-10-2018 BMD_3461 f7882943830554a3b887bca61355f20e 347 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 125 3.0E-29 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_3461 f7882943830554a3b887bca61355f20e 347 SUPERFAMILY SSF51735 3 154 5.3E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3461 f7882943830554a3b887bca61355f20e 347 Gene3D G3DSA:3.40.50.720 4 317 4.2E-112 T 13-10-2018 BMD_3461 f7882943830554a3b887bca61355f20e 347 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 239 3.6E-8 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BMD_3461 f7882943830554a3b887bca61355f20e 347 SUPERFAMILY SSF55347 132 297 2.35E-16 T 13-10-2018 BMD_3461 f7882943830554a3b887bca61355f20e 347 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 336 51.522 T 13-10-2018 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 BMD_3061 c105cdad0eec2f992870708ad87c1069 177 SUPERFAMILY SSF81301 4 175 7.52E-34 T 13-10-2018 BMD_3061 c105cdad0eec2f992870708ad87c1069 177 Pfam PF04229 GrpB protein 3 175 8.3E-34 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase BMD_3061 c105cdad0eec2f992870708ad87c1069 177 Gene3D G3DSA:3.30.460.10 2 177 1.8E-37 T 13-10-2018 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 Gene3D G3DSA:3.90.170.10 265 428 5.0E-70 T 13-10-2018 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 Gene3D G3DSA:3.40.440.10 5 252 6.4E-105 T 13-10-2018 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 131 142 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 Pfam PF00709 Adenylosuccinate synthetase 4 420 3.0E-184 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 SUPERFAMILY SSF52540 1 426 5.52E-174 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 Gene3D G3DSA:1.10.300.10 100 199 6.4E-105 T 13-10-2018 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 426 5.1E-198 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 SMART SM00788 3 422 7.0E-289 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BMD_5250 bc071316cfe8b0bf41f2ca68f32b4ebb 428 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 428 210.267 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BMD_3165 2f98edd509d0a520167845d16a359051 206 SUPERFAMILY SSF53335 10 149 9.4E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_3165 2f98edd509d0a520167845d16a359051 206 Pfam PF08241 Methyltransferase domain 48 138 1.1E-20 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BMD_3165 2f98edd509d0a520167845d16a359051 206 Gene3D G3DSA:3.40.50.150 2 181 1.5E-30 T 13-10-2018 BMD_0593 9ea686736686de5c693021b5fc856e10 247 SUPERFAMILY SSF52540 4 233 9.48E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0593 9ea686736686de5c693021b5fc856e10 247 Pfam PF00005 ABC transporter 20 163 1.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0593 9ea686736686de5c693021b5fc856e10 247 Gene3D G3DSA:3.40.50.300 3 246 3.0E-63 T 13-10-2018 BMD_0593 9ea686736686de5c693021b5fc856e10 247 SMART SM00382 29 211 1.1E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1362 86f43c0701f10464937cbe4b7c8449d5 225 Pfam PF04298 Putative neutral zinc metallopeptidase 4 218 4.7E-93 T 13-10-2018 IPR007395 Putative neutral zinc metallopeptidase BMD_0750 c488f3e77dcef2b6855b299c7651b77f 178 PIRSF PIRSF019587 8 170 1.0E-67 T 13-10-2018 IPR026038 Putative phosphatidylglycerophosphatase BMD_0750 c488f3e77dcef2b6855b299c7651b77f 178 SUPERFAMILY SSF101307 15 164 4.71E-48 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 BMD_0750 c488f3e77dcef2b6855b299c7651b77f 178 Pfam PF04608 Phosphatidylglycerophosphatase A 24 161 1.4E-19 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 BMD_0750 c488f3e77dcef2b6855b299c7651b77f 178 Gene3D G3DSA:1.10.3760.10 4 175 3.7E-69 T 13-10-2018 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 Gene3D G3DSA:3.90.226.10 136 338 9.2E-80 T 13-10-2018 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 PRINTS PR00127 Clp protease catalytic subunit P signature 235 252 1.4E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 PRINTS PR00127 Clp protease catalytic subunit P signature 164 179 1.4E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 PRINTS PR00127 Clp protease catalytic subunit P signature 256 275 1.4E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 PRINTS PR00127 Clp protease catalytic subunit P signature 313 332 1.4E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 PRINTS PR00127 Clp protease catalytic subunit P signature 204 224 1.4E-49 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 235 246 - T 13-10-2018 IPR018215 ClpP, Ser active site BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 257 270 - T 13-10-2018 IPR033135 ClpP, histidine active site BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 146 337 2.6E-99 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 148 338 42.094 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 Pfam PF00574 Clp protease 158 336 4.7E-82 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BMD_3096 a1063fe7a23e3c1527eeecc373fcba2a 338 SUPERFAMILY SSF52096 155 335 2.32E-67 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4140 fadbec8f53bb13172c004ae4a6b2a069 93 Pfam PF04296 Protein of unknown function (DUF448) 10 82 9.6E-26 T 13-10-2018 IPR007393 Domain of unknown function DUF448 BMD_4140 fadbec8f53bb13172c004ae4a6b2a069 93 SUPERFAMILY SSF64376 5 89 3.27E-27 T 13-10-2018 IPR035931 YlxR-like superfamily BMD_4140 fadbec8f53bb13172c004ae4a6b2a069 93 Gene3D G3DSA:3.30.1230.10 2 93 6.9E-34 T 13-10-2018 IPR035931 YlxR-like superfamily BMD_5214 5fb8e5aba6354260df184620c23a480c 582 Pfam PF00005 ABC transporter 359 506 4.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_5214 5fb8e5aba6354260df184620c23a480c 582 SUPERFAMILY SSF90123 7 491 3.66E-37 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_5214 5fb8e5aba6354260df184620c23a480c 582 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 7 536 3.4E-160 T 13-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 BMD_5214 5fb8e5aba6354260df184620c23a480c 582 SMART SM00382 367 552 1.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5214 5fb8e5aba6354260df184620c23a480c 582 SUPERFAMILY SSF52540 338 575 3.76E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5214 5fb8e5aba6354260df184620c23a480c 582 Gene3D G3DSA:1.20.1560.10 6 316 2.7E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_5214 5fb8e5aba6354260df184620c23a480c 582 ProSitePatterns PS00211 ABC transporters family signature. 478 492 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_5214 5fb8e5aba6354260df184620c23a480c 582 Gene3D G3DSA:3.40.50.300 333 576 1.4E-73 T 13-10-2018 BMD_5214 5fb8e5aba6354260df184620c23a480c 582 Pfam PF00664 ABC transporter transmembrane region 23 271 1.1E-7 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_3569 9e60044572ccf69578b8de609e29212e 209 Hamap MF_01969 Kynurenine formamidase [kynB]. 3 207 42.154 T 13-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_3569 9e60044572ccf69578b8de609e29212e 209 SUPERFAMILY SSF102198 2 204 1.96E-56 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_3569 9e60044572ccf69578b8de609e29212e 209 Gene3D G3DSA:3.50.30.50 1 206 2.3E-71 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_3569 9e60044572ccf69578b8de609e29212e 209 TIGRFAM TIGR03035 trp_arylform: arylformamidase 3 206 6.2E-86 T 13-10-2018 IPR017484 Kynurenine formamidase, bacteria GO:0004328|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_3569 9e60044572ccf69578b8de609e29212e 209 Pfam PF04199 Putative cyclase 5 150 6.5E-20 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 Gene3D G3DSA:3.20.20.10 38 297 6.9E-160 T 13-10-2018 IPR029066 PLP-binding barrel BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 40 296 3.4E-71 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 9 430 8.3E-160 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 33 388 1.1E-17 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 63 81 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 SUPERFAMILY SSF50621 276 431 1.82E-54 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 81 7.5E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 198 211 7.5E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 95 7.5E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 287 306 7.5E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 388 401 7.5E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 81 98 7.7E-32 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 316 334 7.7E-32 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 398 420 7.7E-32 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 PRINTS PR01181 Diaminopimelate decarboxylase signature 170 179 7.7E-32 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 SUPERFAMILY SSF51419 30 299 3.63E-80 T 13-10-2018 IPR029066 PLP-binding barrel BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 Gene3D G3DSA:2.40.37.10 17 427 6.9E-160 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BMD_4369 bc7ceaf2268408756d9c1fd965faa9df 439 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 19 431 41.225 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1721 9c2004fd2f22863261be8e3aa883ea58 249 SMART SM00849 54 230 5.0E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1721 9c2004fd2f22863261be8e3aa883ea58 249 SUPERFAMILY SSF56281 33 235 4.06E-36 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_1721 9c2004fd2f22863261be8e3aa883ea58 249 Pfam PF00753 Metallo-beta-lactamase superfamily 53 230 7.9E-23 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1721 9c2004fd2f22863261be8e3aa883ea58 249 Gene3D G3DSA:3.60.15.10 19 239 4.7E-35 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4297 cfcc21bf5d5016c9ffeb363103369d4c 224 Pfam PF00033 Cytochrome b/b6/petB 40 219 1.4E-48 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 BMD_4297 cfcc21bf5d5016c9ffeb363103369d4c 224 PIRSF PIRSF000032 2 224 2.0E-102 T 13-10-2018 BMD_4297 cfcc21bf5d5016c9ffeb363103369d4c 224 SUPERFAMILY SSF81342 6 224 6.28E-61 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BMD_4297 cfcc21bf5d5016c9ffeb363103369d4c 224 Gene3D G3DSA:1.20.810.10 1 224 3.2E-89 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 BMD_3235 83fc18425e0317e9bc8950ba75b127f1 183 Pfam PF07883 Cupin domain 110 175 8.2E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_3235 83fc18425e0317e9bc8950ba75b127f1 183 Pfam PF01381 Helix-turn-helix 14 65 3.2E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3235 83fc18425e0317e9bc8950ba75b127f1 183 SUPERFAMILY SSF47413 5 73 2.44E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3235 83fc18425e0317e9bc8950ba75b127f1 183 Gene3D G3DSA:1.10.260.40 2 80 4.7E-20 T 13-10-2018 BMD_3235 83fc18425e0317e9bc8950ba75b127f1 183 SMART SM00530 11 66 1.1E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3235 83fc18425e0317e9bc8950ba75b127f1 183 Gene3D G3DSA:2.60.120.10 92 183 2.7E-25 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3235 83fc18425e0317e9bc8950ba75b127f1 183 SUPERFAMILY SSF51182 51 181 7.24E-26 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_0445 d4e1a1ff0f32930cb6911e9117fddb15 392 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 7 387 32.02 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 BMD_0445 d4e1a1ff0f32930cb6911e9117fddb15 392 TIGRFAM TIGR02877 spore_yhbH: sporulation protein YhbH 9 382 6.5E-183 T 13-10-2018 IPR014230 Sporulation protein YhbH BMD_0445 d4e1a1ff0f32930cb6911e9117fddb15 392 Pfam PF04285 Protein of unknown function (DUF444) 15 188 5.9E-35 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 BMD_0445 d4e1a1ff0f32930cb6911e9117fddb15 392 Pfam PF04285 Protein of unknown function (DUF444) 196 385 2.7E-68 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 BMD_0445 d4e1a1ff0f32930cb6911e9117fddb15 392 SUPERFAMILY SSF53300 218 340 5.08E-5 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BMD_1407 43aff68af1742e383bfa3043013e2d8b 501 Pfam PF00990 Diguanylate cyclase, GGDEF domain 341 495 8.2E-36 T 13-10-2018 IPR000160 GGDEF domain BMD_1407 43aff68af1742e383bfa3043013e2d8b 501 SUPERFAMILY SSF55785 213 328 3.14E-5 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1407 43aff68af1742e383bfa3043013e2d8b 501 Gene3D G3DSA:3.30.70.270 332 498 1.3E-42 T 13-10-2018 BMD_1407 43aff68af1742e383bfa3043013e2d8b 501 SUPERFAMILY SSF55073 346 494 3.06E-37 T 13-10-2018 IPR029787 Nucleotide cyclase BMD_1407 43aff68af1742e383bfa3043013e2d8b 501 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 339 494 2.7E-33 T 13-10-2018 IPR000160 GGDEF domain BMD_1407 43aff68af1742e383bfa3043013e2d8b 501 SMART SM00267 330 501 2.0E-39 T 13-10-2018 IPR000160 GGDEF domain BMD_1407 43aff68af1742e383bfa3043013e2d8b 501 Gene3D G3DSA:3.30.450.20 211 331 2.2E-6 T 13-10-2018 BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 Gene3D G3DSA:3.30.70.980 83 234 7.4E-46 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 235 6.3E-71 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 Hamap MF_00918 Probable transcriptional regulatory protein YeeN [yeeN]. 1 238 56.527 T 13-10-2018 IPR026562 Probable transcriptional regulatory protein YeeN BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 Gene3D G3DSA:1.10.10.200 2 79 6.5E-25 T 13-10-2018 IPR017856 Integrase-like, N-terminal BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 237 31.545 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 SUPERFAMILY SSF75625 1 236 6.15E-81 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 Gene3D G3DSA:3.30.70.980 131 201 7.4E-46 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_0194 03dc09e6879bfa53c1d4641f08aae32f 238 Pfam PF01709 Transcriptional regulator 4 235 4.0E-82 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 Pfam PF00919 Uncharacterized protein family UPF0004 4 98 9.7E-27 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 431 1.7E-150 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 SUPERFAMILY SSF102114 125 365 2.75E-57 T 13-10-2018 BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 Pfam PF04055 Radical SAM superfamily 149 319 1.5E-27 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 Gene3D G3DSA:3.80.30.20 140 375 1.7E-86 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 SMART SM00729 143 361 5.6E-57 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 Gene3D G3DSA:3.40.50.12160 3 133 4.5E-25 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 423 3.0E-142 T 13-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 BMD_4547 fc481111c1bf3b81c5c0ba85ca1a446b 452 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 147 167 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 145 68.082 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 3 141 1.0E-66 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 Pfam PF01220 Dehydroquinase class II 3 139 1.7E-63 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 Gene3D G3DSA:3.40.50.9100 1 145 5.7E-67 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 PIRSF PIRSF001399 1 145 8.4E-64 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 4 141 4.0E-52 T 13-10-2018 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 SUPERFAMILY SSF52304 3 143 6.67E-61 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_4460 5b70d6ca83d556ae4fe684da5f12721b 145 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 13-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_3391 4a2771434c6e8dc67c10d8d87c84a2a2 325 SUPERFAMILY SSF54593 1 309 5.65E-49 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3391 4a2771434c6e8dc67c10d8d87c84a2a2 325 Gene3D G3DSA:3.10.180.10 65 223 2.3E-111 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3391 4a2771434c6e8dc67c10d8d87c84a2a2 325 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 125 1.6E-14 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_3391 4a2771434c6e8dc67c10d8d87c84a2a2 325 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 156 279 6.7E-17 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_3391 4a2771434c6e8dc67c10d8d87c84a2a2 325 Gene3D G3DSA:3.10.180.10 5 318 2.3E-111 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3661 c274d8551e83dbb9d5cb4ca73bb8d6f0 97 SMART SM00877 6 82 1.2E-32 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3661 c274d8551e83dbb9d5cb4ca73bb8d6f0 97 Gene3D G3DSA:3.30.70.1710 1 96 1.1E-38 T 13-10-2018 BMD_3661 c274d8551e83dbb9d5cb4ca73bb8d6f0 97 Pfam PF00936 BMC domain 7 82 3.8E-26 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3661 c274d8551e83dbb9d5cb4ca73bb8d6f0 97 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 7 68 5.0E-12 T 13-10-2018 BMD_3661 c274d8551e83dbb9d5cb4ca73bb8d6f0 97 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 24 43 - T 13-10-2018 IPR020808 Bacterial microcompartments protein, conserved site BMD_3661 c274d8551e83dbb9d5cb4ca73bb8d6f0 97 SUPERFAMILY SSF143414 6 92 1.12E-30 T 13-10-2018 IPR037233 CcmK-like superfamily BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 SUPERFAMILY SSF53790 3 199 1.83E-34 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 226 346 5.1E-35 T 13-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 Gene3D G3DSA:3.40.50.150 201 398 1.7E-68 T 13-10-2018 BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 Gene3D G3DSA:3.40.1010.10 1 98 3.2E-15 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 5 196 5.3E-57 T 13-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 SUPERFAMILY SSF53335 220 365 9.49E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 59 185 8.4E-13 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 PIRSF PIRSF036428 1 398 1.2E-127 T 13-10-2018 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00860+2.1.1.132 BMD_2601 81e72b34250acbdab79943fe6f8cb90d 398 Pfam PF12847 Methyltransferase domain 240 346 1.8E-6 T 13-10-2018 BMD_4586 5a48791e2433aa98c09f38bc924acbae 588 Gene3D G3DSA:3.40.710.10 237 587 1.5E-72 T 13-10-2018 BMD_4586 5a48791e2433aa98c09f38bc924acbae 588 SUPERFAMILY SSF56519 50 223 5.23E-15 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BMD_4586 5a48791e2433aa98c09f38bc924acbae 588 Pfam PF00905 Penicillin binding protein transpeptidase domain 263 579 1.4E-56 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_4586 5a48791e2433aa98c09f38bc924acbae 588 Gene3D G3DSA:3.90.1310.30 51 231 2.8E-10 T 13-10-2018 BMD_4586 5a48791e2433aa98c09f38bc924acbae 588 SUPERFAMILY SSF56601 188 581 2.56E-62 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_0960 236072acc3585c2835d4fb9a2f1cccb9 240 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 10 222 1.2E-77 T 13-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BMD_0960 236072acc3585c2835d4fb9a2f1cccb9 240 Gene3D G3DSA:3.30.1360.40 1 96 3.1E-26 T 13-10-2018 BMD_0960 236072acc3585c2835d4fb9a2f1cccb9 240 SUPERFAMILY SSF50891 99 229 3.79E-49 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0960 236072acc3585c2835d4fb9a2f1cccb9 240 Gene3D G3DSA:2.40.100.10 98 237 2.2E-61 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0960 236072acc3585c2835d4fb9a2f1cccb9 240 SMART SM00796 5 213 6.2E-97 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BMD_0960 236072acc3585c2835d4fb9a2f1cccb9 240 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 213 2.1E-74 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BMD_0960 236072acc3585c2835d4fb9a2f1cccb9 240 SUPERFAMILY SSF160467 6 104 5.23E-17 T 13-10-2018 BMD_4610 76081a40f227993835a8d2cb62c7f7c1 294 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 7 289 5.7E-92 T 13-10-2018 IPR011862 Phosphate binding protein GO:0042301 BMD_4610 76081a40f227993835a8d2cb62c7f7c1 294 Pfam PF12849 PBP superfamily domain 37 273 1.6E-41 T 13-10-2018 IPR024370 PBP domain BMD_4610 76081a40f227993835a8d2cb62c7f7c1 294 SUPERFAMILY SSF53850 42 290 2.66E-72 T 13-10-2018 BMD_4610 76081a40f227993835a8d2cb62c7f7c1 294 Gene3D G3DSA:3.40.190.10 45 288 6.8E-82 T 13-10-2018 BMD_4610 76081a40f227993835a8d2cb62c7f7c1 294 Gene3D G3DSA:3.40.190.10 119 246 6.8E-82 T 13-10-2018 BMD_4192 b893a190f35c35add13c9e151dab078f 386 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 3.8E-165 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4192 b893a190f35c35add13c9e151dab078f 386 Pfam PF00549 CoA-ligase 262 380 3.3E-25 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BMD_4192 b893a190f35c35add13c9e151dab078f 386 Gene3D G3DSA:3.30.470.20 1 234 2.5E-98 T 13-10-2018 BMD_4192 b893a190f35c35add13c9e151dab078f 386 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BMD_4192 b893a190f35c35add13c9e151dab078f 386 Gene3D G3DSA:3.30.1490.20 21 104 2.5E-98 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_4192 b893a190f35c35add13c9e151dab078f 386 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 44.966 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4192 b893a190f35c35add13c9e151dab078f 386 SUPERFAMILY SSF52210 241 386 2.49E-53 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BMD_4192 b893a190f35c35add13c9e151dab078f 386 Pfam PF08442 ATP-grasp domain 2 203 5.9E-83 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4192 b893a190f35c35add13c9e151dab078f 386 Gene3D G3DSA:3.40.50.261 240 386 9.6E-56 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BMD_4192 b893a190f35c35add13c9e151dab078f 386 PIRSF PIRSF001554 1 386 4.0E-157 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4192 b893a190f35c35add13c9e151dab078f 386 SUPERFAMILY SSF56059 1 238 1.56E-85 T 13-10-2018 BMD_2364 d8bd3f6944ade2391ed34063d4159eda 153 Pfam PF12802 MarR family 37 85 6.4E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2364 d8bd3f6944ade2391ed34063d4159eda 153 SUPERFAMILY SSF46785 32 143 3.01E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2364 d8bd3f6944ade2391ed34063d4159eda 153 SMART SM00347 29 131 5.3E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2364 d8bd3f6944ade2391ed34063d4159eda 153 Gene3D G3DSA:1.10.10.10 4 146 2.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2864 206d9a8532d34b404399fccd0902a1be 256 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2864 206d9a8532d34b404399fccd0902a1be 256 SMART SM00382 31 229 2.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2864 206d9a8532d34b404399fccd0902a1be 256 Pfam PF00005 ABC transporter 22 180 1.5E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2864 206d9a8532d34b404399fccd0902a1be 256 SUPERFAMILY SSF52540 6 251 2.82E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2864 206d9a8532d34b404399fccd0902a1be 256 Gene3D G3DSA:3.40.50.300 4 256 1.8E-71 T 13-10-2018 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 Pfam PF01566 Natural resistance-associated macrophage protein 51 399 3.9E-115 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 14 425 37.295 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 30 393 2.1E-127 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 PRINTS PR00447 Natural resistance-associated macrophage protein signature 315 334 7.4E-34 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 PRINTS PR00447 Natural resistance-associated macrophage protein signature 138 157 7.4E-34 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 PRINTS PR00447 Natural resistance-associated macrophage protein signature 213 236 7.4E-34 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 PRINTS PR00447 Natural resistance-associated macrophage protein signature 110 136 7.4E-34 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_2511 bb1c53247498a667e1668e1e81e61b0f 426 PRINTS PR00447 Natural resistance-associated macrophage protein signature 163 184 7.4E-34 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_3306 31d6bab6be54e2c5a524821e9edf1197 86 Pfam PF00741 Gas vesicle protein 11 49 1.4E-15 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 BMD_3306 31d6bab6be54e2c5a524821e9edf1197 86 ProSitePatterns PS00669 Gas vesicles protein GVPa signature 2. 45 58 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 BMD_3306 31d6bab6be54e2c5a524821e9edf1197 86 Hamap MF_00576 Gas vesicle structural protein [gvpA]. 4 79 25.546 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 BMD_3306 31d6bab6be54e2c5a524821e9edf1197 86 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 12 26 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 BMD_1127 8e01d1831fd15e8e3f6c3346db5a94a3 316 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 92 233 5.5E-50 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_1127 8e01d1831fd15e8e3f6c3346db5a94a3 316 Gene3D G3DSA:1.10.260.150 57 316 1.4E-89 T 13-10-2018 BMD_1127 8e01d1831fd15e8e3f6c3346db5a94a3 316 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 91 234 1.9E-52 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_1127 8e01d1831fd15e8e3f6c3346db5a94a3 316 Hamap MF_01140 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU [tagU]. 16 315 51.075 T 13-10-2018 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU BMD_3898 f9b7d262508c7d94856aacffc4cc2dc4 300 Gene3D G3DSA:3.10.50.40 173 262 5.4E-10 T 13-10-2018 BMD_3898 f9b7d262508c7d94856aacffc4cc2dc4 300 Gene3D G3DSA:1.10.4030.30 75 276 5.4E-10 T 13-10-2018 BMD_3898 f9b7d262508c7d94856aacffc4cc2dc4 300 Pfam PF13145 PPIC-type PPIASE domain 155 265 6.3E-7 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 BMD_3898 f9b7d262508c7d94856aacffc4cc2dc4 300 SUPERFAMILY SSF109998 49 197 2.31E-8 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily BMD_2047 068ce34dfe09e16e051ddd7f7a1e7813 144 Gene3D G3DSA:1.10.1660.10 3 143 5.1E-29 T 13-10-2018 BMD_2047 068ce34dfe09e16e051ddd7f7a1e7813 144 Pfam PF13411 MerR HTH family regulatory protein 5 71 1.5E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_2047 068ce34dfe09e16e051ddd7f7a1e7813 144 SMART SM00422 4 74 3.1E-29 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_2047 068ce34dfe09e16e051ddd7f7a1e7813 144 SUPERFAMILY SSF46955 4 112 8.42E-25 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_2976 21c4bebfa9dfde0da756ed75ce47ef9a 247 Gene3D G3DSA:3.20.20.150 1 247 3.7E-59 T 13-10-2018 BMD_2976 21c4bebfa9dfde0da756ed75ce47ef9a 247 Pfam PF01261 Xylose isomerase-like TIM barrel 40 186 9.8E-7 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_2976 21c4bebfa9dfde0da756ed75ce47ef9a 247 SUPERFAMILY SSF51658 2 237 1.42E-40 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_4994 e42660c5c3301cdd4c984514d99ac9ef 305 PIRSF PIRSF000196 1 305 1.8E-128 T 13-10-2018 IPR008219 Proline dehydrogenase, bacteria and archaea GO:0004657|GO:0010133 KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 BMD_4994 e42660c5c3301cdd4c984514d99ac9ef 305 Gene3D G3DSA:3.20.20.530 19 305 2.9E-98 T 13-10-2018 BMD_4994 e42660c5c3301cdd4c984514d99ac9ef 305 SUPERFAMILY SSF51730 37 300 9.42E-78 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like BMD_4994 e42660c5c3301cdd4c984514d99ac9ef 305 Pfam PF01619 Proline dehydrogenase 44 298 1.5E-35 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 BMD_2168 53463828e2cec72a12cb9634754e22dc 405 Gene3D G3DSA:1.20.1250.20 13 199 4.6E-21 T 13-10-2018 BMD_2168 53463828e2cec72a12cb9634754e22dc 405 Gene3D G3DSA:1.20.1250.20 217 401 6.1E-23 T 13-10-2018 BMD_2168 53463828e2cec72a12cb9634754e22dc 405 Pfam PF07690 Major Facilitator Superfamily 23 359 6.5E-30 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2168 53463828e2cec72a12cb9634754e22dc 405 SUPERFAMILY SSF103473 12 394 1.57E-56 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 192 1.4E-23 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 3 439 45.994 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 Gene3D G3DSA:3.40.50.880 245 457 6.6E-12 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 SUPERFAMILY SSF52540 1 195 4.82E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 SUPERFAMILY SSF52317 246 449 9.48E-33 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 5 448 2.2E-141 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 248 438 9.2E-39 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 BMD_2597 a2735be29bb48ab5e506d5770c4d773d 460 Gene3D G3DSA:3.40.50.300 4 190 8.0E-26 T 13-10-2018 BMD_3938 81d504df0f7d9a6e103f1b806f994f27 188 SUPERFAMILY SSF46689 5 73 2.31E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3938 81d504df0f7d9a6e103f1b806f994f27 188 Gene3D G3DSA:1.10.357.10 1 188 1.7E-62 T 13-10-2018 BMD_3938 81d504df0f7d9a6e103f1b806f994f27 188 SUPERFAMILY SSF48498 78 185 6.67E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_3938 81d504df0f7d9a6e103f1b806f994f27 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 2.2E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3938 81d504df0f7d9a6e103f1b806f994f27 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 4.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3938 81d504df0f7d9a6e103f1b806f994f27 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 4.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5264 717255552665ab6b3d5e79457bcea207 260 PIRSF PIRSF009320 89 259 6.6E-8 T 13-10-2018 BMD_5264 717255552665ab6b3d5e79457bcea207 260 PIRSF PIRSF009320 2 85 1.0E-14 T 13-10-2018 BMD_5264 717255552665ab6b3d5e79457bcea207 260 Gene3D G3DSA:3.40.50.300 1 257 9.2E-83 T 13-10-2018 BMD_5264 717255552665ab6b3d5e79457bcea207 260 Pfam PF13614 AAA domain 2 178 2.4E-73 T 13-10-2018 IPR025669 AAA domain BMD_5264 717255552665ab6b3d5e79457bcea207 260 SUPERFAMILY SSF52540 1 251 1.1E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0701 6427831063b46667ed617f0ed4e13a6c 579 Gene3D G3DSA:3.40.190.10 25 310 2.6E-65 T 13-10-2018 BMD_0701 6427831063b46667ed617f0ed4e13a6c 579 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 104 125 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site BMD_0701 6427831063b46667ed617f0ed4e13a6c 579 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 100 494 3.3E-85 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_0701 6427831063b46667ed617f0ed4e13a6c 579 PIRSF PIRSF002741 4 579 2.5E-107 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_0701 6427831063b46667ed617f0ed4e13a6c 579 SUPERFAMILY SSF53850 51 577 2.53E-120 T 13-10-2018 BMD_0701 6427831063b46667ed617f0ed4e13a6c 579 Gene3D G3DSA:3.10.105.10 311 545 9.2E-66 T 13-10-2018 BMD_0873 f2e100a4d283f976cbc30e10092dea45 344 Pfam PF01032 FecCD transport family 27 337 1.5E-95 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_0873 f2e100a4d283f976cbc30e10092dea45 344 SUPERFAMILY SSF81345 12 337 2.75E-83 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_0873 f2e100a4d283f976cbc30e10092dea45 344 Gene3D G3DSA:1.10.3470.10 15 343 1.5E-96 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_2747 0046dbd4a7a2c1fd81adebe96c607b73 378 PIRSF PIRSF006078 1 376 9.7E-147 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BMD_2747 0046dbd4a7a2c1fd81adebe96c607b73 378 Gene3D G3DSA:3.40.50.10350 1 362 8.7E-146 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold BMD_2747 0046dbd4a7a2c1fd81adebe96c607b73 378 Pfam PF02595 Glycerate kinase family 3 373 1.8E-154 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BMD_2747 0046dbd4a7a2c1fd81adebe96c607b73 378 SUPERFAMILY SSF110738 1 375 1.57E-146 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 BMD_2747 0046dbd4a7a2c1fd81adebe96c607b73 378 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 2.0E-165 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BMD_2747 0046dbd4a7a2c1fd81adebe96c607b73 378 Gene3D G3DSA:3.90.1510.10 42 276 8.7E-146 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 SMART SM00091 124 189 6.9E-5 T 13-10-2018 IPR000014 PAS domain BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 Gene3D G3DSA:3.30.450.20 115 227 1.8E-18 T 13-10-2018 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 Pfam PF00158 Sigma-54 interaction domain 253 417 8.8E-52 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 125 235 5.6E-10 T 13-10-2018 IPR000014 PAS domain BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 Gene3D G3DSA:1.10.8.60 422 488 1.9E-24 T 13-10-2018 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 464 473 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 533 553 3.0E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 516 533 3.0E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 SUPERFAMILY SSF46689 464 553 5.68E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 SUPERFAMILY SSF52540 252 494 6.1E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 SMART SM00382 271 414 1.3E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 Gene3D G3DSA:3.40.50.300 244 421 1.7E-53 T 13-10-2018 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 Pfam PF02954 Bacterial regulatory protein, Fis family 514 550 1.0E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 337 352 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 Pfam PF13426 PAS domain 136 227 1.4E-8 T 13-10-2018 IPR000014 PAS domain BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 Gene3D G3DSA:1.10.10.60 489 553 1.5E-16 T 13-10-2018 BMD_5070 3dbb401de5e15df3ef4ce97a4610619c 553 SUPERFAMILY SSF55785 124 227 2.09E-12 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 164 3.9E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 3.9E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.9E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 3.9E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 Pfam PF00106 short chain dehydrogenase 2 186 8.4E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 SUPERFAMILY SSF51735 2 212 1.12E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 186 0.0046 T 13-10-2018 BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 164 2.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 72 83 2.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 2.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0398 149f59c29c65e4c8f4e2bc96a847f74a 217 Gene3D G3DSA:3.40.50.720 1 216 3.4E-56 T 13-10-2018 BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.6E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.6E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.6E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 SUPERFAMILY SSF53850 89 294 2.04E-39 T 13-10-2018 BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.6E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 SUPERFAMILY SSF46785 1 84 9.98E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 Pfam PF03466 LysR substrate binding domain 89 289 1.5E-39 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 Gene3D G3DSA:1.10.10.10 1 91 8.0E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3940 a0e42c8824f4eee710a3501ba7564e6e 299 Gene3D G3DSA:3.40.190.290 92 296 2.7E-49 T 13-10-2018 BMD_0601 f5b32bb705ead61cd177ecb40310da26 347 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 6 342 2.5E-123 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BMD_0601 f5b32bb705ead61cd177ecb40310da26 347 SUPERFAMILY SSF51726 5 344 1.31E-102 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_0601 f5b32bb705ead61cd177ecb40310da26 347 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 341 8.1E-127 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BMD_0601 f5b32bb705ead61cd177ecb40310da26 347 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 141 157 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BMD_0601 f5b32bb705ead61cd177ecb40310da26 347 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 7 343 47.372 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BMD_0601 f5b32bb705ead61cd177ecb40310da26 347 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 23 32 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BMD_0601 f5b32bb705ead61cd177ecb40310da26 347 Gene3D G3DSA:3.20.20.210 1 347 4.1E-148 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_1571 8d3c7933cbeef5d9fe7596cde0693443 164 Gene3D G3DSA:3.40.35.10 1 162 5.0E-57 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 BMD_1571 8d3c7933cbeef5d9fe7596cde0693443 164 SUPERFAMILY SSF52728 1 158 2.49E-54 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 BMD_1571 8d3c7933cbeef5d9fe7596cde0693443 164 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 2 152 5.6E-67 T 13-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 BMD_1571 8d3c7933cbeef5d9fe7596cde0693443 164 Pfam PF03830 PTS system sorbose subfamily IIB component 3 149 1.3E-52 T 13-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 SUPERFAMILY SSF51064 131 186 1.22E-19 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 PRINTS PR00773 GrpE protein signature 165 184 1.8E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 PRINTS PR00773 GrpE protein signature 84 99 1.8E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 PRINTS PR00773 GrpE protein signature 138 153 1.8E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 PRINTS PR00773 GrpE protein signature 56 72 1.8E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 Hamap MF_01151 Protein GrpE [grpE]. 4 186 21.867 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 ProSitePatterns PS01071 grpE protein signature. 141 184 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 Gene3D G3DSA:3.90.20.20 2 129 9.7E-27 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 Pfam PF01025 GrpE 24 186 2.4E-54 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 Gene3D G3DSA:2.30.22.10 130 186 1.8E-25 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 BMD_4552 3d319916368e2a5f6e94206b788a9d4b 186 SUPERFAMILY SSF58014 33 130 1.29E-27 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 Gene3D G3DSA:3.40.50.2300 1 127 8.8E-36 T 13-10-2018 BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 3.0E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 SUPERFAMILY SSF46894 125 226 3.68E-30 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 SUPERFAMILY SSF52172 1 127 2.99E-39 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 SMART SM00448 2 112 4.2E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 Pfam PF00072 Response regulator receiver domain 4 113 2.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 SMART SM00862 149 225 2.1E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2587 7c97bacdb27c73f5ed693d8440f7d3fb 227 Gene3D G3DSA:1.10.10.10 128 227 5.2E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 PIRSF PIRSF000193 4 272 6.7E-74 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 102 3.5E-19 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 SUPERFAMILY SSF48179 164 272 5.95E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 Gene3D G3DSA:3.40.50.720 1 166 7.7E-45 T 13-10-2018 BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 165 269 5.3E-34 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 5 269 24.988 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 Gene3D G3DSA:1.10.3730.10 167 274 2.2E-37 T 13-10-2018 BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 SUPERFAMILY SSF51735 6 163 2.24E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2243 e3ff5639e1c0b05ae42e67efec85edc8 280 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 7 269 4.0E-81 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_2145 18e762808ac137e93afc2d677d178379 226 SMART SM00862 150 226 1.9E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2145 18e762808ac137e93afc2d677d178379 226 SUPERFAMILY SSF52172 4 178 2.57E-41 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2145 18e762808ac137e93afc2d677d178379 226 SMART SM00448 3 113 3.5E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2145 18e762808ac137e93afc2d677d178379 226 Gene3D G3DSA:1.10.10.10 129 226 3.2E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2145 18e762808ac137e93afc2d677d178379 226 Pfam PF00072 Response regulator receiver domain 5 114 2.5E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2145 18e762808ac137e93afc2d677d178379 226 Gene3D G3DSA:3.40.50.2300 1 128 2.0E-38 T 13-10-2018 BMD_2145 18e762808ac137e93afc2d677d178379 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 9.5E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 SMART SM00345 17 76 2.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 Gene3D G3DSA:3.40.640.10 151 371 1.3E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 SUPERFAMILY SSF53383 110 475 1.08E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 4.4E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 9.5E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 9.5E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 Pfam PF00155 Aminotransferase class I and II 118 468 4.9E-34 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 Gene3D G3DSA:1.10.10.10 4 78 4.2E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 SUPERFAMILY SSF46785 6 78 1.11E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2696 c9e038c140243255bcb7f88c533af3c1 477 Gene3D G3DSA:3.90.1150.10 114 472 1.3E-104 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_5018 00bdc898e884a3d909053699fa1ab0e8 154 Pfam PF02391 MoaE protein 10 119 2.8E-36 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BMD_5018 00bdc898e884a3d909053699fa1ab0e8 154 Gene3D G3DSA:3.90.1170.40 3 148 1.6E-54 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BMD_5018 00bdc898e884a3d909053699fa1ab0e8 154 SUPERFAMILY SSF54690 5 138 4.58E-45 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BMD_1899 ad05e8e81db7cbe8e288f3b810b0d6af 435 Gene3D G3DSA:1.20.1250.20 6 200 5.4E-43 T 13-10-2018 BMD_1899 ad05e8e81db7cbe8e288f3b810b0d6af 435 PIRSF PIRSF002808 2 435 4.4E-35 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BMD_1899 ad05e8e81db7cbe8e288f3b810b0d6af 435 Pfam PF07690 Major Facilitator Superfamily 22 384 1.4E-59 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1899 ad05e8e81db7cbe8e288f3b810b0d6af 435 Gene3D G3DSA:1.20.1250.20 224 425 5.3E-31 T 13-10-2018 BMD_1899 ad05e8e81db7cbe8e288f3b810b0d6af 435 SUPERFAMILY SSF103473 5 427 2.49E-86 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4595 ce5df0a72854dedf2633a96e636009b2 138 Gene3D G3DSA:3.30.420.140 1 138 1.5E-50 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 BMD_4595 ce5df0a72854dedf2633a96e636009b2 138 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 4 135 7.0E-52 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BMD_4595 ce5df0a72854dedf2633a96e636009b2 138 SMART SM00732 1 103 1.1E-37 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 BMD_4595 ce5df0a72854dedf2633a96e636009b2 138 SUPERFAMILY SSF53098 1 137 1.97E-45 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_4595 ce5df0a72854dedf2633a96e636009b2 138 Pfam PF03652 Holliday junction resolvase 1 136 5.7E-46 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BMD_4595 ce5df0a72854dedf2633a96e636009b2 138 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 1 138 27.37 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BMD_2460 2404bc6dcc02aa6bf42d9cc853e494bb 442 SUPERFAMILY SSF54001 307 437 2.8E-29 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_2460 2404bc6dcc02aa6bf42d9cc853e494bb 442 Pfam PF00877 NlpC/P60 family 329 437 2.4E-24 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_2460 2404bc6dcc02aa6bf42d9cc853e494bb 442 Gene3D G3DSA:3.90.1720.10 232 441 1.5E-40 T 13-10-2018 BMD_0800 685c35033333ffc5aacea865860fb0c6 566 Pfam PF06833 Malonate decarboxylase gamma subunit (MdcE) 304 564 4.6E-71 T 13-10-2018 BMD_0800 685c35033333ffc5aacea865860fb0c6 566 Pfam PF01039 Carboxyl transferase domain 14 232 2.0E-10 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 BMD_0800 685c35033333ffc5aacea865860fb0c6 566 Gene3D G3DSA:3.90.226.10 325 546 2.5E-22 T 13-10-2018 BMD_0800 685c35033333ffc5aacea865860fb0c6 566 Gene3D G3DSA:3.90.226.10 4 237 1.7E-44 T 13-10-2018 BMD_0800 685c35033333ffc5aacea865860fb0c6 566 TIGRFAM TIGR03134 malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit 300 564 1.1E-87 T 13-10-2018 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit GO:0044262 MetaCyc: PWY-6060 BMD_0800 685c35033333ffc5aacea865860fb0c6 566 TIGRFAM TIGR03133 malonate_beta: biotin-independent malonate decarboxylase, beta subunit 6 276 6.1E-107 T 13-10-2018 IPR017556 Biotin-independent malonate decarboxylase, beta subunit GO:0016831|GO:0044262 MetaCyc: PWY-6060 BMD_0800 685c35033333ffc5aacea865860fb0c6 566 SUPERFAMILY SSF52096 9 225 3.34E-30 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_0800 685c35033333ffc5aacea865860fb0c6 566 SUPERFAMILY SSF52096 377 489 1.14E-14 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 SUPERFAMILY SSF52029 183 374 4.78E-84 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 SUPERFAMILY SSF48592 5 518 3.83E-79 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 522 9.7E-99 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 Gene3D G3DSA:3.30.260.10 135 408 2.5E-233 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 Gene3D G3DSA:1.10.560.10 7 518 2.5E-233 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 SUPERFAMILY SSF54849 136 204 4.81E-26 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 Gene3D G3DSA:3.50.7.10 190 370 2.5E-233 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 524 4.3E-258 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 PRINTS PR00298 60kDa chaperonin signature 266 289 5.1E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 PRINTS PR00298 60kDa chaperonin signature 82 109 5.1E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 PRINTS PR00298 60kDa chaperonin signature 396 417 5.1E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 PRINTS PR00298 60kDa chaperonin signature 26 52 5.1E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 PRINTS PR00298 60kDa chaperonin signature 348 373 5.1E-73 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_0261 38f9467c0f7d5ca4e57f8e836f57ddb1 543 Hamap MF_00600 60 kDa chaperonin [groL]. 1 542 42.439 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 Gene3D G3DSA:2.40.30.30 190 318 2.2E-41 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 Pfam PF06574 FAD synthetase 16 168 7.6E-49 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 21 85 5.0E-9 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 Pfam PF01687 Riboflavin kinase 186 309 4.6E-36 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 21 311 1.6E-94 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 PIRSF PIRSF004491 4 318 1.9E-104 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 SUPERFAMILY SSF82114 176 312 2.09E-46 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 SMART SM00904 185 311 2.4E-57 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 SUPERFAMILY SSF52374 20 185 1.52E-29 T 13-10-2018 BMD_4134 dba5948b7c3d636e87c6936f470d53f3 318 Gene3D G3DSA:3.40.50.620 6 189 1.0E-55 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_3972 8c0137432fff69b78026cff264158122 421 SMART SM01091 321 398 3.2E-20 T 13-10-2018 IPR005170 Transporter-associated domain BMD_3972 8c0137432fff69b78026cff264158122 421 SMART SM00116 192 241 7.1E-4 T 13-10-2018 IPR000644 CBS domain BMD_3972 8c0137432fff69b78026cff264158122 421 SMART SM00116 257 305 4.5 T 13-10-2018 IPR000644 CBS domain BMD_3972 8c0137432fff69b78026cff264158122 421 Gene3D G3DSA:3.30.465.10 315 396 1.2E-17 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_3972 8c0137432fff69b78026cff264158122 421 Pfam PF03471 Transporter associated domain 322 396 1.2E-17 T 13-10-2018 IPR005170 Transporter-associated domain BMD_3972 8c0137432fff69b78026cff264158122 421 Pfam PF01595 Domain of unknown function DUF21 2 168 1.1E-39 T 13-10-2018 IPR002550 CNNM, transmembrane domain BMD_3972 8c0137432fff69b78026cff264158122 421 Gene3D G3DSA:3.10.580.10 162 314 2.0E-50 T 13-10-2018 BMD_3972 8c0137432fff69b78026cff264158122 421 Pfam PF00571 CBS domain 256 305 5.5E-6 T 13-10-2018 IPR000644 CBS domain BMD_3972 8c0137432fff69b78026cff264158122 421 Pfam PF00571 CBS domain 184 241 1.7E-7 T 13-10-2018 IPR000644 CBS domain BMD_3972 8c0137432fff69b78026cff264158122 421 SUPERFAMILY SSF56176 319 402 1.23E-17 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_3972 8c0137432fff69b78026cff264158122 421 SUPERFAMILY SSF54631 171 308 1.24E-31 T 13-10-2018 BMD_1649 c991b909ad3532712a8c3b3a59f93b7f 367 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 5 363 6.1E-59 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_1649 c991b909ad3532712a8c3b3a59f93b7f 367 Pfam PF03845 Spore germination protein 5 324 1.8E-62 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_4816 ac7ac9b073038baa49437556e345f70d 174 Pfam PF01931 Protein of unknown function DUF84 6 160 9.2E-45 T 13-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 BMD_4816 ac7ac9b073038baa49437556e345f70d 174 Gene3D G3DSA:3.90.950.10 1 165 1.7E-49 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BMD_4816 ac7ac9b073038baa49437556e345f70d 174 SUPERFAMILY SSF52972 1 165 1.83E-44 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BMD_4336 e350d60f601b92790e7988ff04a9bb15 310 Gene3D G3DSA:2.40.10.420 275 310 3.8E-22 T 13-10-2018 BMD_4336 e350d60f601b92790e7988ff04a9bb15 310 Gene3D G3DSA:1.10.101.10 28 111 2.4E-17 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_4336 e350d60f601b92790e7988ff04a9bb15 310 Pfam PF01471 Putative peptidoglycan binding domain 44 96 6.3E-13 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_4336 e350d60f601b92790e7988ff04a9bb15 310 SUPERFAMILY SSF47090 33 101 3.92E-17 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_4336 e350d60f601b92790e7988ff04a9bb15 310 Pfam PF07486 Cell Wall Hydrolase 211 309 2.3E-28 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_4336 e350d60f601b92790e7988ff04a9bb15 310 Gene3D G3DSA:1.10.10.2520 195 274 4.3E-32 T 13-10-2018 BMD_4336 e350d60f601b92790e7988ff04a9bb15 310 TIGRFAM TIGR02869 spore_SleB: spore cortex-lytic enzyme 32 310 7.3E-98 T 13-10-2018 IPR014224 Spore cortex-lytic enzyme SleB GO:0003824|GO:0009847 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 13 492 1.0E-122 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 SUPERFAMILY SSF55486 10 492 7.94E-86 T 13-10-2018 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 Gene3D G3DSA:1.10.1370.30 3 498 1.2E-165 T 13-10-2018 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 289 305 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 330 349 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 444 462 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 262 281 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 242 261 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 376 393 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 225 241 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 145 165 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 399 420 1.6E-47 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3831 960b7f5a61a736f09b51edecec58f810 498 PIRSF PIRSF006615 2 498 1.3E-154 T 13-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BMD_3887 d1682414586c733abae033db42b2f256 100 Pfam PF03845 Spore germination protein 1 54 5.3E-8 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 233 367 2.9E-17 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 SUPERFAMILY SSF56645 13 212 8.64E-35 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 109 1.1E-12 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 SUPERFAMILY SSF47203 230 387 2.26E-20 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 Gene3D G3DSA:2.40.110.10 120 212 3.5E-24 T 13-10-2018 BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 Gene3D G3DSA:1.10.540.10 11 117 8.6E-25 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 PIRSF PIRSF016578 1 389 3.2E-34 T 13-10-2018 BMD_0869 ded38ae501a6e067cae32c4dbe27c8b5 393 Gene3D G3DSA:1.20.140.10 213 392 2.7E-57 T 13-10-2018 BMD_4815 9585de73ffca488e5f5acc03f029382a 105 Pfam PF00085 Thioredoxin 6 101 7.4E-15 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 BMD_4815 9585de73ffca488e5f5acc03f029382a 105 SUPERFAMILY SSF52833 5 101 2.66E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4815 9585de73ffca488e5f5acc03f029382a 105 Gene3D G3DSA:3.40.30.10 1 102 2.0E-22 T 13-10-2018 BMD_3265 47696f0e5b33a983647e1dc00c9f7c21 222 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 219 6.0E-81 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_3265 47696f0e5b33a983647e1dc00c9f7c21 222 Gene3D G3DSA:3.20.20.70 1 222 1.9E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3265 47696f0e5b33a983647e1dc00c9f7c21 222 Hamap MF_00494 Probable transaldolase [tal]. 1 221 44.126 T 13-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_3265 47696f0e5b33a983647e1dc00c9f7c21 222 ProSitePatterns PS00958 Transaldolase active site. 87 104 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_3265 47696f0e5b33a983647e1dc00c9f7c21 222 SUPERFAMILY SSF51569 1 220 1.47E-72 T 13-10-2018 BMD_3265 47696f0e5b33a983647e1dc00c9f7c21 222 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_3265 47696f0e5b33a983647e1dc00c9f7c21 222 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 217 8.4E-56 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_4396 543f02984fc7c8069ee209d923628108 112 Gene3D G3DSA:2.60.300.12 1 101 4.6E-9 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_4396 543f02984fc7c8069ee209d923628108 112 SUPERFAMILY SSF89360 1 106 6.54E-28 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_4396 543f02984fc7c8069ee209d923628108 112 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 105 2.4E-27 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 70 4.2E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 48 71 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 27 40 1.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 Gene3D G3DSA:1.10.357.10 69 205 1.5E-9 T 13-10-2018 BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 SUPERFAMILY SSF48498 99 205 1.45E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 SUPERFAMILY SSF46689 15 95 1.85E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 ProSitePatterns PS01081 TetR-type HTH domain signature. 39 69 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_1665 7b130acc6f388c25f78ed8301c3d6c0c 206 Gene3D G3DSA:1.10.10.60 4 68 1.1E-17 T 13-10-2018 BMD_0222 45b4f84114fc6518ac600b1129827e78 116 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 4 110 2.4E-33 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 BMD_0222 45b4f84114fc6518ac600b1129827e78 116 Gene3D G3DSA:2.30.30.110 1 116 1.0E-52 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor BMD_0222 45b4f84114fc6518ac600b1129827e78 116 SUPERFAMILY SSF50118 2 113 1.13E-41 T 13-10-2018 BMD_0222 45b4f84114fc6518ac600b1129827e78 116 PIRSF PIRSF033490 1 113 4.0E-39 T 13-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 5.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 5.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 5.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 5.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 5.7E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 5.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 5.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 5.0E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 Gene3D G3DSA:3.40.50.720 2 256 9.9E-62 T 13-10-2018 BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 Pfam PF00106 short chain dehydrogenase 12 208 2.8E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3617 19d0fefad8b46c06b2040d065f33c4ff 261 SUPERFAMILY SSF51735 12 249 1.68E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1378 b9d15c202d5f870d506c1264d9503254 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 1.8E-18 T 13-10-2018 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 1.8E-18 T 13-10-2018 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 114 135 1.8E-18 T 13-10-2018 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 228 252 1.8E-18 T 13-10-2018 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 92 112 1.8E-18 T 13-10-2018 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 Gene3D G3DSA:3.90.1150.10 25 385 1.1E-141 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 SUPERFAMILY SSF53383 3 391 2.02E-116 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1378 b9d15c202d5f870d506c1264d9503254 394 Gene3D G3DSA:3.40.640.10 62 284 1.1E-141 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1378 b9d15c202d5f870d506c1264d9503254 394 Pfam PF00155 Aminotransferase class I and II 31 385 2.9E-79 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 Gene3D G3DSA:3.40.1190.10 3 300 8.0E-105 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 TIGRFAM TIGR01499 folC: bifunctional protein FolC 24 429 5.1E-132 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 SUPERFAMILY SSF53623 3 299 3.56E-98 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 PIRSF PIRSF001563 1 432 1.9E-164 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 Pfam PF08245 Mur ligase middle domain 46 273 3.1E-20 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 Gene3D G3DSA:3.90.190.20 301 432 3.5E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 143 158 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 SUPERFAMILY SSF53244 301 430 2.56E-28 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 Pfam PF02875 Mur ligase family, glutamate ligase domain 299 377 2.5E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BMD_4662 d409a67be1e540ca63b46c475f944dab 432 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 44 67 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 BMD_2654 f7b1798137cd4ea4190b41cfe76ca4c1 94 Gene3D G3DSA:2.40.30.80 1 92 3.4E-37 T 13-10-2018 IPR023105 YkvR-like superfamily BMD_2654 f7b1798137cd4ea4190b41cfe76ca4c1 94 Pfam PF11514 Protein of unknown function (DUF3219) 5 93 2.4E-38 T 13-10-2018 IPR021596 Protein of unknown function DUF3219 BMD_2654 f7b1798137cd4ea4190b41cfe76ca4c1 94 SUPERFAMILY SSF159173 3 93 1.09E-35 T 13-10-2018 IPR023105 YkvR-like superfamily BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 284 5.6E-21 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 SUPERFAMILY SSF48179 169 286 2.95E-28 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 PIRSF PIRSF000103 1 292 5.2E-79 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 Gene3D G3DSA:1.10.1040.10 162 290 2.3E-36 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 SUPERFAMILY SSF51735 1 162 2.68E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 Gene3D G3DSA:3.40.50.720 1 161 1.1E-45 T 13-10-2018 BMD_2694 b460d1321922a68e79c1e5fc08a776f3 292 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 161 1.2E-37 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_1148 8cb762cee3cfb6d80cd08a6ab69235b5 460 TIGRFAM TIGR00797 matE: MATE efflux family protein 27 428 7.8E-98 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1148 8cb762cee3cfb6d80cd08a6ab69235b5 460 Pfam PF01554 MatE 27 187 4.5E-38 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1148 8cb762cee3cfb6d80cd08a6ab69235b5 460 Pfam PF01554 MatE 254 415 9.4E-33 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1148 8cb762cee3cfb6d80cd08a6ab69235b5 460 PIRSF PIRSF006603 2 459 2.5E-138 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1686 7717741e2bf449fb310d3e38c7b96950 124 Pfam PF13473 Cupredoxin-like domain 26 123 2.6E-25 T 13-10-2018 IPR028096 EfeO-type cupredoxin-like domain BMD_1686 7717741e2bf449fb310d3e38c7b96950 124 SUPERFAMILY SSF49503 40 124 6.7E-20 T 13-10-2018 IPR008972 Cupredoxin BMD_1686 7717741e2bf449fb310d3e38c7b96950 124 Gene3D G3DSA:2.60.40.420 26 124 5.4E-38 T 13-10-2018 IPR008972 Cupredoxin BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 SUPERFAMILY SSF52091 139 247 1.81E-11 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 123 4.0E-14 T 13-10-2018 IPR000014 PAS domain BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 SMART SM00091 8 73 9.7E-6 T 13-10-2018 IPR000014 PAS domain BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 Gene3D G3DSA:3.30.450.20 9 131 9.6E-16 T 13-10-2018 BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 SUPERFAMILY SSF55785 22 124 2.99E-15 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 Pfam PF13426 PAS domain 22 116 7.5E-10 T 13-10-2018 IPR000014 PAS domain BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 Pfam PF01740 STAS domain 144 243 6.1E-8 T 13-10-2018 IPR002645 STAS domain BMD_1670 2370ac36ee27f8263850221a8eeec5c0 253 Gene3D G3DSA:3.30.750.24 134 249 7.9E-30 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 SUPERFAMILY SSF56601 208 608 2.63E-99 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 Pfam PF00912 Transglycosylase 54 227 9.4E-66 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 Pfam PF00905 Penicillin binding protein transpeptidase domain 318 590 5.7E-41 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 Gene3D G3DSA:3.40.710.10 292 603 4.6E-189 T 13-10-2018 BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 63 592 7.0E-180 T 13-10-2018 BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 Gene3D G3DSA:3.90.1310.20 48 500 4.6E-189 T 13-10-2018 BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 SUPERFAMILY SSF53955 41 247 2.17E-73 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily BMD_0600 baf16c552bfc44c8cc3e501925ddafc3 709 Gene3D G3DSA:1.10.3810.10 62 252 4.6E-189 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_1993 743ee96ac65982325b18123da4206083 993 SUPERFAMILY SSF49452 56 155 3.27E-24 T 13-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 BMD_1993 743ee96ac65982325b18123da4206083 993 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 381 458 6.7E-13 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BMD_1993 743ee96ac65982325b18123da4206083 993 Gene3D G3DSA:2.60.40.10 372 479 6.7E-29 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1993 743ee96ac65982325b18123da4206083 993 SUPERFAMILY SSF81296 374 479 2.6E-19 T 13-10-2018 IPR014756 Immunoglobulin E-set BMD_1993 743ee96ac65982325b18123da4206083 993 Gene3D G3DSA:2.60.40.2320 275 371 3.3E-7 T 13-10-2018 BMD_1993 743ee96ac65982325b18123da4206083 993 SUPERFAMILY SSF51445 478 901 6.26E-121 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_1993 743ee96ac65982325b18123da4206083 993 SMART SM00642 524 894 2.1E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_1993 743ee96ac65982325b18123da4206083 993 SUPERFAMILY SSF49452 162 274 1.54E-20 T 13-10-2018 IPR013784 Carbohydrate-binding-like fold GO:0030246 BMD_1993 743ee96ac65982325b18123da4206083 993 Gene3D G3DSA:2.60.40.1180 904 993 1.9E-26 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_1993 743ee96ac65982325b18123da4206083 993 TIGRFAM TIGR02104 pulA_typeI: pullulanase, type I 369 971 8.0E-264 T 13-10-2018 IPR011840 Pullulanase, type I BMD_1993 743ee96ac65982325b18123da4206083 993 Gene3D G3DSA:2.60.40.1110 165 272 2.5E-24 T 13-10-2018 BMD_1993 743ee96ac65982325b18123da4206083 993 Gene3D G3DSA:2.60.40.1110 58 154 6.1E-26 T 13-10-2018 BMD_1993 743ee96ac65982325b18123da4206083 993 Pfam PF03714 Bacterial pullanase-associated domain 169 270 1.1E-20 T 13-10-2018 IPR005323 Pullulanase, carbohydrate-binding module 41 GO:0005975|GO:0030246 BMD_1993 743ee96ac65982325b18123da4206083 993 Pfam PF03714 Bacterial pullanase-associated domain 62 151 2.1E-18 T 13-10-2018 IPR005323 Pullulanase, carbohydrate-binding module 41 GO:0005975|GO:0030246 BMD_1993 743ee96ac65982325b18123da4206083 993 Gene3D G3DSA:3.20.20.80 480 903 2.7E-174 T 13-10-2018 BMD_1993 743ee96ac65982325b18123da4206083 993 Pfam PF00128 Alpha amylase, catalytic domain 531 628 5.2E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_1993 743ee96ac65982325b18123da4206083 993 Pfam PF00128 Alpha amylase, catalytic domain 657 857 2.6E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_1638 527bcbb3bea4c42fd5fe6fda88541528 279 SUPERFAMILY SSF53474 3 274 7.15E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1638 527bcbb3bea4c42fd5fe6fda88541528 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 224 238 3.6E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_1638 527bcbb3bea4c42fd5fe6fda88541528 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 3.6E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_1638 527bcbb3bea4c42fd5fe6fda88541528 279 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 3.6E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_1638 527bcbb3bea4c42fd5fe6fda88541528 279 Gene3D G3DSA:3.40.50.1820 1 278 4.2E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1638 527bcbb3bea4c42fd5fe6fda88541528 279 Pfam PF12146 Serine aminopeptidase, S33 24 265 4.4E-19 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_0848 ca20d2dc9de3fb1bdb001ad15bfc39cd 409 Gene3D G3DSA:3.40.640.10 39 403 2.2E-122 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0848 ca20d2dc9de3fb1bdb001ad15bfc39cd 409 SUPERFAMILY SSF53383 16 408 6.39E-80 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0848 ca20d2dc9de3fb1bdb001ad15bfc39cd 409 Pfam PF00155 Aminotransferase class I and II 61 365 3.9E-15 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_2644 cb8385feb95d5c1ebfda6aff99bbfdfe 373 Pfam PF07730 Histidine kinase 178 244 1.9E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BMD_2644 cb8385feb95d5c1ebfda6aff99bbfdfe 373 Gene3D G3DSA:3.30.565.10 257 367 6.0E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2644 cb8385feb95d5c1ebfda6aff99bbfdfe 373 SUPERFAMILY SSF55874 251 369 7.47E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4938 79a4a1d4c70eb7ac44daaf100124b696 174 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 159 170 - T 13-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_4938 79a4a1d4c70eb7ac44daaf100124b696 174 SUPERFAMILY SSF49329 28 170 2.23E-40 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_4938 79a4a1d4c70eb7ac44daaf100124b696 174 Gene3D G3DSA:2.60.40.200 24 174 6.9E-48 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_4938 79a4a1d4c70eb7ac44daaf100124b696 174 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 35 170 1.1E-36 T 13-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BMD_3069 b65153a9d9a02e7563037e051790d06d 345 Pfam PF02277 Phosphoribosyltransferase 6 341 1.4E-132 T 13-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BMD_3069 b65153a9d9a02e7563037e051790d06d 345 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 11 341 5.9E-134 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BMD_3069 b65153a9d9a02e7563037e051790d06d 345 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 8 343 35.767 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BMD_3069 b65153a9d9a02e7563037e051790d06d 345 SUPERFAMILY SSF52733 4 342 1.11E-117 T 13-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BMD_3069 b65153a9d9a02e7563037e051790d06d 345 Gene3D G3DSA:3.40.50.10210 52 324 8.3E-132 T 13-10-2018 BMD_3069 b65153a9d9a02e7563037e051790d06d 345 Gene3D G3DSA:1.10.1610.10 20 341 8.3E-132 T 13-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BMD_4590 c47f5b882caaffe713d63a5a3d0b52df 384 ProSitePatterns PS01276 Peptidase family U32 signature. 140 158 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BMD_4590 c47f5b882caaffe713d63a5a3d0b52df 384 Pfam PF01136 Peptidase family U32 54 285 5.4E-86 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BMD_4590 c47f5b882caaffe713d63a5a3d0b52df 384 Pfam PF16325 Peptidase family U32 C-terminal domain 301 381 1.7E-24 T 13-10-2018 IPR032525 Peptidase family U32, C-terminal BMD_4590 c47f5b882caaffe713d63a5a3d0b52df 384 Gene3D G3DSA:2.40.30.10 296 383 1.5E-36 T 13-10-2018 BMD_3246 012a04240a4b7a96bec37c26be06728d 172 Pfam PF01872 RibD C-terminal domain 4 163 1.3E-16 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 BMD_3246 012a04240a4b7a96bec37c26be06728d 172 SUPERFAMILY SSF53597 2 171 2.88E-33 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BMD_3246 012a04240a4b7a96bec37c26be06728d 172 Gene3D G3DSA:3.40.430.10 1 172 2.5E-43 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 198 210 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 25 221 7.6E-93 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 23 42 7.6E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 62 81 7.6E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 150 170 7.6E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 42 62 7.6E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 171 192 7.6E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 195 220 7.6E-67 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 150 165 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 Pfam PF00813 FliP family 25 217 9.8E-84 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 93 107 1.1E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 81 93 1.1E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 211 221 1.1E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 21 30 1.1E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 143 155 1.1E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BMD_4165 602403f69fd2ac6aea396cfc7919090e 222 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 121 133 1.1E-24 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BMD_2495 3094269f94e8cc9fcf3bd61ba9965c07 262 SUPERFAMILY SSF142921 11 68 2.09E-5 T 13-10-2018 IPR036930 WGR domain superfamily BMD_2495 3094269f94e8cc9fcf3bd61ba9965c07 262 Pfam PF14024 Protein of unknown function (DUF4240) 80 206 4.7E-37 T 13-10-2018 IPR025334 Domain of unknown function (DUF4240 BMD_2495 3094269f94e8cc9fcf3bd61ba9965c07 262 SMART SM00773 1 71 4.3E-12 T 13-10-2018 IPR008893 WGR domain BMD_2495 3094269f94e8cc9fcf3bd61ba9965c07 262 Pfam PF05406 WGR domain 4 67 1.5E-12 T 13-10-2018 IPR008893 WGR domain BMD_2495 3094269f94e8cc9fcf3bd61ba9965c07 262 Gene3D G3DSA:2.20.140.10 2 72 3.0E-24 T 13-10-2018 IPR036930 WGR domain superfamily BMD_4127 caf843de603104d2f39e05e7a6b6f978 201 PIRSF PIRSF001390 1 194 8.1E-80 T 13-10-2018 IPR014214 Dipicolinic acid synthetase, subunit B BMD_4127 caf843de603104d2f39e05e7a6b6f978 201 Pfam PF02441 Flavoprotein 6 154 1.1E-15 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 BMD_4127 caf843de603104d2f39e05e7a6b6f978 201 SUPERFAMILY SSF52507 3 180 2.09E-29 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BMD_4127 caf843de603104d2f39e05e7a6b6f978 201 TIGRFAM TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit 6 192 2.5E-102 T 13-10-2018 IPR014214 Dipicolinic acid synthetase, subunit B BMD_4127 caf843de603104d2f39e05e7a6b6f978 201 Gene3D G3DSA:3.40.50.1950 1 199 2.3E-57 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BMD_2328 d0b49409bb0cdb679a87d08099ae42e5 294 SUPERFAMILY SSF51366 18 266 2.59E-69 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_2328 d0b49409bb0cdb679a87d08099ae42e5 294 PIRSF PIRSF029271 1 294 1.6E-152 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_2328 d0b49409bb0cdb679a87d08099ae42e5 294 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 9 294 6.8E-157 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_2328 d0b49409bb0cdb679a87d08099ae42e5 294 ProSitePatterns PS01235 PdxS/SNZ family signature. 205 223 - T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_2328 d0b49409bb0cdb679a87d08099ae42e5 294 Pfam PF01680 SOR/SNZ family 8 212 9.6E-106 T 13-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_2328 d0b49409bb0cdb679a87d08099ae42e5 294 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 4 294 53.69 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_2328 d0b49409bb0cdb679a87d08099ae42e5 294 Gene3D G3DSA:3.20.20.70 1 294 1.6E-147 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 Gene3D G3DSA:1.10.10.10 1 74 1.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 SMART SM00895 99 226 1.3E-22 T 13-10-2018 IPR011711 GntR, C-terminal BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 8.2E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 SMART SM00345 15 74 5.2E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 Pfam PF07729 FCD domain 100 225 7.5E-26 T 13-10-2018 IPR011711 GntR, C-terminal BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 SUPERFAMILY SSF48008 95 234 1.28E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 SUPERFAMILY SSF46785 5 78 1.12E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 6.2E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 6.2E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1221 a32e93c4a499b00adcc1beb9a91e1ad6 239 Gene3D G3DSA:1.20.120.530 80 233 4.1E-31 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 SMART SM00267 131 312 1.3E-55 T 13-10-2018 IPR000160 GGDEF domain BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 26 137 6.3E-16 T 13-10-2018 IPR000014 PAS domain BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 Gene3D G3DSA:3.20.20.450 326 571 1.6E-93 T 13-10-2018 IPR035919 EAL domain superfamily BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 SUPERFAMILY SSF55073 147 312 1.26E-41 T 13-10-2018 IPR029787 Nucleotide cyclase BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 SMART SM00086 89 131 8.2E-9 T 13-10-2018 IPR001610 PAC motif BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 Gene3D G3DSA:3.30.70.270 141 325 2.4E-55 T 13-10-2018 BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 Pfam PF00990 Diguanylate cyclase, GGDEF domain 142 308 4.2E-44 T 13-10-2018 IPR000160 GGDEF domain BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 Pfam PF08447 PAS fold 41 124 8.6E-13 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 Gene3D G3DSA:3.30.450.20 9 140 5.0E-31 T 13-10-2018 BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 Pfam PF00563 EAL domain 328 560 1.9E-70 T 13-10-2018 IPR001633 EAL domain BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 SUPERFAMILY SSF55785 27 128 3.32E-27 T 13-10-2018 IPR035965 PAS domain superfamily BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 SMART SM00052 322 565 1.4E-104 T 13-10-2018 IPR001633 EAL domain BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 139 311 1.4E-35 T 13-10-2018 IPR000160 GGDEF domain BMD_3821 f0588d20839760b41369bd5aef56b5f9 571 SUPERFAMILY SSF141868 327 570 1.83E-83 T 13-10-2018 IPR035919 EAL domain superfamily BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 Gene3D G3DSA:3.40.190.10 86 174 7.3E-53 T 13-10-2018 BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 Pfam PF01842 ACT domain 202 254 2.3E-6 T 13-10-2018 IPR002912 ACT domain BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 Pfam PF00800 Prephenate dehydratase 6 186 1.6E-56 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 PIRSF PIRSF001500 3 284 3.3E-68 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 Gene3D G3DSA:3.30.70.260 194 283 3.1E-25 T 13-10-2018 BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 229 236 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 Gene3D G3DSA:3.40.190.10 8 183 7.3E-53 T 13-10-2018 BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 SUPERFAMILY SSF55021 193 281 5.99E-24 T 13-10-2018 BMD_4641 6a38a9959bd4dad33ddc66622dd1279d 290 SUPERFAMILY SSF53850 5 187 6.24E-54 T 13-10-2018 BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 SMART SM01134 75 241 7.5E-56 T 13-10-2018 BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 Pfam PF00455 DeoR C terminal sensor domain 78 236 3.7E-43 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 Gene3D G3DSA:1.10.10.10 2 57 6.3E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 SMART SM00420 8 60 6.1E-19 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 Pfam PF08220 DeoR-like helix-turn-helix domain 8 63 1.2E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 SUPERFAMILY SSF100950 78 238 1.26E-29 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 8.0E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 8.0E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3229 232e05884c43c3efe95fd926f345a1d9 256 SUPERFAMILY SSF46785 6 71 1.63E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 SUPERFAMILY SSF46785 1 109 1.91E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.9E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.9E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.9E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 Pfam PF03466 LysR substrate binding domain 86 289 5.0E-33 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 Gene3D G3DSA:3.40.190.290 91 295 8.5E-34 T 13-10-2018 BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 Gene3D G3DSA:1.10.10.10 1 90 5.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 1.5E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0171 fefa3288064fe0f046c81c7ef46a6ae9 302 SUPERFAMILY SSF53850 87 290 3.94E-29 T 13-10-2018 BMD_1481 f8070c14c151d5990a7f870fc85d136a 400 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 8 395 1.6E-107 T 13-10-2018 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 BMD_1481 f8070c14c151d5990a7f870fc85d136a 400 Gene3D G3DSA:3.40.50.2000 218 381 2.3E-117 T 13-10-2018 BMD_1481 f8070c14c151d5990a7f870fc85d136a 400 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 221 373 2.4E-17 T 13-10-2018 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0016758 Reactome: R-HSA-156588 BMD_1481 f8070c14c151d5990a7f870fc85d136a 400 SUPERFAMILY SSF53756 1 394 1.5E-72 T 13-10-2018 BMD_1481 f8070c14c151d5990a7f870fc85d136a 400 Gene3D G3DSA:3.40.50.2000 5 392 2.3E-117 T 13-10-2018 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 Gene3D G3DSA:3.30.365.10 451 624 1.1E-98 T 13-10-2018 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 Gene3D G3DSA:3.30.365.10 372 762 1.1E-98 T 13-10-2018 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 Gene3D G3DSA:3.30.365.10 16 285 1.9E-101 T 13-10-2018 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 SUPERFAMILY SSF56003 113 767 9.42E-155 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 SMART SM01008 18 121 4.1E-41 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 Gene3D G3DSA:3.90.1170.50 33 121 1.9E-101 T 13-10-2018 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 156 709 1.8E-137 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 SUPERFAMILY SSF54665 3 141 2.09E-42 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 Gene3D G3DSA:3.30.365.10 122 361 1.9E-101 T 13-10-2018 BMD_2558 f606dcdbacb7d8214829b49a0cac2810 776 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 18 121 6.6E-28 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 57 541 1.7E-113 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 Gene3D G3DSA:3.60.20.40 372 547 9.4E-66 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 SUPERFAMILY SSF56235 51 546 2.7E-137 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 394 412 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 76 101 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 273 292 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 134 152 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 448 465 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 425 440 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 152 171 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 372 390 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 244 260 1.2E-56 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 Pfam PF01019 Gamma-glutamyltranspeptidase 69 544 1.3E-118 T 13-10-2018 BMD_1095 c0f3bc3999a4b566afa3919a699e96ce 549 Gene3D G3DSA:1.10.246.230 260 359 1.3E-28 T 13-10-2018 BMD_1994 95f6e580ff64b56c73fb8518c5b01937 497 Gene3D G3DSA:3.40.309.10 273 462 5.3E-207 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_1994 95f6e580ff64b56c73fb8518c5b01937 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 268 275 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_1994 95f6e580ff64b56c73fb8518c5b01937 497 Gene3D G3DSA:3.40.605.10 27 490 5.3E-207 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_1994 95f6e580ff64b56c73fb8518c5b01937 497 SUPERFAMILY SSF53720 22 495 2.62E-188 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_1994 95f6e580ff64b56c73fb8518c5b01937 497 Pfam PF00171 Aldehyde dehydrogenase family 31 492 6.4E-194 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 Gene3D G3DSA:2.10.109.10 87 204 8.2E-42 T 13-10-2018 BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 119 129 1.5E-10 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 159 171 1.5E-10 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 130 141 1.5E-10 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 Pfam PF01726 LexA DNA binding domain 2 64 1.6E-27 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 SUPERFAMILY SSF51306 81 202 2.96E-36 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 Pfam PF00717 Peptidase S24-like 122 186 2.1E-17 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 Hamap MF_00015 LexA repressor [lexA]. 2 204 34.432 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 Gene3D G3DSA:1.10.10.10 1 67 2.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 SUPERFAMILY SSF46785 1 69 5.19E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4077 8d648cca5570ed2ddc71f8c67e04c179 205 TIGRFAM TIGR00498 lexA: repressor LexA 2 204 7.6E-82 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 SUPERFAMILY SSF50129 2 93 1.77E-34 T 13-10-2018 IPR011032 GroES-like superfamily BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 Gene3D G3DSA:2.30.33.40 1 93 3.0E-38 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 SMART SM00883 1 93 1.4E-55 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 Pfam PF00166 Chaperonin 10 Kd subunit 2 93 4.1E-36 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 PRINTS PR00297 10kDa chaperonin signature 24 45 1.6E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 PRINTS PR00297 10kDa chaperonin signature 2 17 1.6E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 PRINTS PR00297 10kDa chaperonin signature 59 71 1.6E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 PRINTS PR00297 10kDa chaperonin signature 80 93 1.6E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 Hamap MF_00580 10 kDa chaperonin [groS]. 1 94 26.851 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BMD_0260 0fccf10e0d55e6b168d6b2f8c010a8ff 94 ProSitePatterns PS00681 Chaperonins cpn10 signature. 2 26 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 BMD_5237 91305f20e27c7d14752e4734d681afce 332 PIRSF PIRSF006621 2 328 3.9E-85 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BMD_5237 91305f20e27c7d14752e4734d681afce 332 SUPERFAMILY SSF51395 13 319 3.06E-59 T 13-10-2018 BMD_5237 91305f20e27c7d14752e4734d681afce 332 Pfam PF01207 Dihydrouridine synthase (Dus) 15 320 1.2E-49 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BMD_5237 91305f20e27c7d14752e4734d681afce 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 99 117 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BMD_5237 91305f20e27c7d14752e4734d681afce 332 Gene3D G3DSA:3.20.20.70 13 250 2.6E-61 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3146 47d532a89af5cb3002d93987b1f4644b 425 Gene3D G3DSA:2.30.40.10 9 416 1.8E-153 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_3146 47d532a89af5cb3002d93987b1f4644b 425 Hamap MF_00372 Imidazolonepropionase [hutI]. 5 418 37.889 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_3146 47d532a89af5cb3002d93987b1f4644b 425 SUPERFAMILY SSF51556 79 379 5.39E-68 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_3146 47d532a89af5cb3002d93987b1f4644b 425 TIGRFAM TIGR01224 hutI: imidazolonepropionase 35 417 1.4E-126 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_3146 47d532a89af5cb3002d93987b1f4644b 425 Pfam PF01979 Amidohydrolase family 255 418 2.4E-19 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_3146 47d532a89af5cb3002d93987b1f4644b 425 SUPERFAMILY SSF51338 35 422 2.33E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_3146 47d532a89af5cb3002d93987b1f4644b 425 Gene3D G3DSA:3.20.20.140 80 378 1.8E-153 T 13-10-2018 BMD_0216 9c30ab9ddec865d2314fe520bb8a06fd 323 Pfam PF03851 UV-endonuclease UvdE 7 277 9.2E-88 T 13-10-2018 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 BMD_0216 9c30ab9ddec865d2314fe520bb8a06fd 323 TIGRFAM TIGR00629 uvde: UV damage endonuclease UvdE 4 306 8.3E-69 T 13-10-2018 IPR004601 UV-endonuclease UvdE GO:0004519|GO:0006289|GO:0009411 BMD_0216 9c30ab9ddec865d2314fe520bb8a06fd 323 Gene3D G3DSA:3.20.20.150 4 312 9.7E-96 T 13-10-2018 BMD_0216 9c30ab9ddec865d2314fe520bb8a06fd 323 SUPERFAMILY SSF51658 94 277 4.97E-12 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 Pfam PF00005 ABC transporter 268 421 2.3E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 Gene3D G3DSA:3.40.50.300 253 490 5.9E-45 T 13-10-2018 BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 ProSitePatterns PS00211 ABC transporters family signature. 394 408 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 SUPERFAMILY SSF52540 263 482 1.78E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 Pfam PF00005 ABC transporter 18 168 4.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 SMART SM00382 27 224 5.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 SMART SM00382 276 470 1.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 Gene3D G3DSA:3.40.50.300 1 236 2.6E-60 T 13-10-2018 BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0924 a2635ee96ac6ec558385c6199df98e83 493 SUPERFAMILY SSF52540 3 222 2.66E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PIRSF PIRSF003161 4 339 8.7E-123 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 6 339 1.4E-149 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 Pfam PF14842 FliG N-terminal domain 9 112 1.0E-35 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain BMD_4179 f301deabf9904a700ca16b45c2804efc 339 Gene3D G3DSA:1.10.220.30 108 199 6.4E-35 T 13-10-2018 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 SUPERFAMILY SSF48029 119 330 4.97E-69 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical BMD_4179 f301deabf9904a700ca16b45c2804efc 339 Pfam PF14841 FliG middle domain 120 194 1.3E-32 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 39 65 6.7E-77 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 119 142 6.7E-77 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 253 273 6.7E-77 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 10 26 6.7E-77 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 231 251 6.7E-77 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 200 225 6.7E-77 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 277 303 6.7E-77 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 Gene3D G3DSA:1.10.220.30 200 339 5.4E-48 T 13-10-2018 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 SUPERFAMILY SSF48029 11 104 9.29E-21 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical BMD_4179 f301deabf9904a700ca16b45c2804efc 339 Gene3D G3DSA:1.10.220.30 3 90 3.7E-20 T 13-10-2018 BMD_4179 f301deabf9904a700ca16b45c2804efc 339 Pfam PF01706 FliG C-terminal domain 223 329 6.8E-42 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal BMD_2541 091977e7cd002b17ffcd15b42c7e3f3c 80 TIGRFAM TIGR03090 SASP_tlp: small, acid-soluble spore protein tlp 6 72 6.8E-28 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like BMD_2541 091977e7cd002b17ffcd15b42c7e3f3c 80 Hamap MF_01506 Small, acid-soluble spore protein Tlp [tlp]. 1 78 28.687 T 13-10-2018 IPR017524 Small acid-soluble spore protein, thioredoxin-like BMD_0167 532826cd3d8000102837898ce68be357 130 SUPERFAMILY SSF54211 5 130 1.86E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_0167 532826cd3d8000102837898ce68be357 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 35.085 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid BMD_0167 532826cd3d8000102837898ce68be357 130 Gene3D G3DSA:3.30.230.10 1 130 3.1E-53 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_0167 532826cd3d8000102837898ce68be357 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 BMD_0167 532826cd3d8000102837898ce68be357 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 6.7E-47 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 BMD_4995 26845f2fe4544fb6631f07bc7a966731 85 Pfam PF10835 Protein of unknown function (DUF2573) 4 79 2.1E-37 T 13-10-2018 IPR020393 Uncharacterised protein family YusU BMD_4995 26845f2fe4544fb6631f07bc7a966731 85 ProDom PD065427 YUSU IG COIL COILED BH3491 5 80 2.0E-25 T 13-10-2018 IPR020393 Uncharacterised protein family YusU BMD_1835 c11fb2dbf04164e29d4ba6d0f2ad4a17 332 Gene3D G3DSA:3.40.50.300 3 331 1.2E-99 T 13-10-2018 BMD_1835 c11fb2dbf04164e29d4ba6d0f2ad4a17 332 Pfam PF00005 ABC transporter 25 183 6.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1835 c11fb2dbf04164e29d4ba6d0f2ad4a17 332 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 319 6.1E-28 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_1835 c11fb2dbf04164e29d4ba6d0f2ad4a17 332 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 300 7.6E-21 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_1835 c11fb2dbf04164e29d4ba6d0f2ad4a17 332 SMART SM00382 34 241 1.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1835 c11fb2dbf04164e29d4ba6d0f2ad4a17 332 SUPERFAMILY SSF52540 5 254 1.18E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1835 c11fb2dbf04164e29d4ba6d0f2ad4a17 332 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 PIRSF PIRSF000521 23 450 1.5E-39 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 Pfam PF00202 Aminotransferase class-III 30 444 3.4E-120 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 4 450 51.958 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 Gene3D G3DSA:3.90.1150.10 12 447 2.1E-164 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 16 447 5.4E-164 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 SUPERFAMILY SSF53383 11 449 1.49E-130 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0830 fa9d8fc63890790ae64f60810175b79d 457 Gene3D G3DSA:3.40.640.10 66 346 2.1E-164 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3298 c1ba6dae1bfa60c9151bec8680ab418a 269 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 5 266 6.8E-53 T 13-10-2018 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 Gene3D G3DSA:3.40.800.10 7 305 2.6E-120 T 13-10-2018 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 Pfam PF00491 Arginase family 9 300 2.7E-81 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 TIGRFAM TIGR01229 rocF_arginase: arginase 11 304 6.7E-110 T 13-10-2018 IPR014033 Arginase GO:0004053|GO:0006525|GO:0046872 KEGG: 00220+3.5.3.1|KEGG: 00330+3.5.3.1|MetaCyc: PWY-31|MetaCyc: PWY-4984|MetaCyc: PWY-6305|MetaCyc: PWY-6922|Reactome: R-HSA-70635 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 PIRSF PIRSF036979 7 303 1.3E-38 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 ProSitePatterns PS01053 Arginase family signature. 230 251 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 PRINTS PR00116 Arginase signature 124 151 1.1E-41 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 PRINTS PR00116 Arginase signature 262 276 1.1E-41 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 PRINTS PR00116 Arginase signature 101 116 1.1E-41 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 PRINTS PR00116 Arginase signature 178 196 1.1E-41 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 PRINTS PR00116 Arginase signature 227 256 1.1E-41 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_0185 6d3080d62a747eebdeafeca7f29cc575 305 SUPERFAMILY SSF52768 10 301 2.52E-96 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_2402 5df3ab01c6269fbaf3a4911ef4f26113 182 Gene3D G3DSA:1.10.3210.10 2 161 1.7E-43 T 13-10-2018 BMD_2402 5df3ab01c6269fbaf3a4911ef4f26113 182 SUPERFAMILY SSF109604 2 134 3.07E-37 T 13-10-2018 BMD_2402 5df3ab01c6269fbaf3a4911ef4f26113 182 SMART SM00471 23 129 2.9E-9 T 13-10-2018 IPR003607 HD/PDEase domain BMD_2402 5df3ab01c6269fbaf3a4911ef4f26113 182 Pfam PF13328 HD domain 7 131 6.5E-21 T 13-10-2018 IPR003607 HD/PDEase domain BMD_1396 9d2c1e337176f97762eb769cf2be0e3c 381 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 376 2.8E-151 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_1396 9d2c1e337176f97762eb769cf2be0e3c 381 Gene3D G3DSA:3.90.1150.10 246 381 1.7E-50 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1396 9d2c1e337176f97762eb769cf2be0e3c 381 SUPERFAMILY SSF53383 9 377 7.93E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1396 9d2c1e337176f97762eb769cf2be0e3c 381 Gene3D G3DSA:3.40.640.10 1 245 3.2E-90 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1396 9d2c1e337176f97762eb769cf2be0e3c 381 PIRSF PIRSF001434 1 380 5.8E-140 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_0751 a39c020242c8538b8ef84dc4b2eb2fce 159 Pfam PF00583 Acetyltransferase (GNAT) family 58 145 1.1E-9 T 13-10-2018 IPR000182 GNAT domain BMD_0751 a39c020242c8538b8ef84dc4b2eb2fce 159 SUPERFAMILY SSF55729 3 151 7.55E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0751 a39c020242c8538b8ef84dc4b2eb2fce 159 Gene3D G3DSA:3.40.630.30 4 158 5.4E-29 T 13-10-2018 BMD_0522 c1c48ba380f181391e865794d40927ae 331 SMART SM00829 11 327 7.5E-12 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_0522 c1c48ba380f181391e865794d40927ae 331 SUPERFAMILY SSF50129 2 163 2.04E-29 T 13-10-2018 IPR011032 GroES-like superfamily BMD_0522 c1c48ba380f181391e865794d40927ae 331 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 126 1.4E-12 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_0522 c1c48ba380f181391e865794d40927ae 331 Pfam PF00107 Zinc-binding dehydrogenase 170 292 1.4E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_0522 c1c48ba380f181391e865794d40927ae 331 Gene3D G3DSA:3.40.50.720 140 277 2.3E-83 T 13-10-2018 BMD_0522 c1c48ba380f181391e865794d40927ae 331 Gene3D G3DSA:3.90.180.10 20 320 2.3E-83 T 13-10-2018 BMD_0522 c1c48ba380f181391e865794d40927ae 331 SUPERFAMILY SSF51735 135 304 5.38E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1037 6b5594ac5a2cca0ae26dedb73a938ecf 224 SUPERFAMILY SSF53335 8 224 8.83E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_1037 6b5594ac5a2cca0ae26dedb73a938ecf 224 Pfam PF13649 Methyltransferase domain 47 141 1.6E-22 T 13-10-2018 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 SMART SM01038 763 1032 4.2E-112 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Gene3D G3DSA:2.60.120.260 16 232 4.0E-92 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 PRINTS PR00132 Glycosyl hydrolase family 2 signature 159 174 2.9E-39 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 PRINTS PR00132 Glycosyl hydrolase family 2 signature 541 556 2.9E-39 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 PRINTS PR00132 Glycosyl hydrolase family 2 signature 356 370 2.9E-39 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 PRINTS PR00132 Glycosyl hydrolase family 2 signature 467 482 2.9E-39 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 PRINTS PR00132 Glycosyl hydrolase family 2 signature 388 406 2.9E-39 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 SUPERFAMILY SSF49303 631 741 1.37E-27 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Gene3D G3DSA:3.20.20.80 347 633 3.7E-108 T 13-10-2018 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 SUPERFAMILY SSF74650 748 1033 1.36E-88 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Gene3D G3DSA:2.70.98.10 746 1031 3.1E-92 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 467 481 - T 13-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 59 231 1.2E-44 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Gene3D G3DSA:2.60.40.10 635 738 3.4E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 SUPERFAMILY SSF49785 20 232 7.29E-65 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 SUPERFAMILY SSF49303 233 345 1.41E-25 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 347 638 1.7E-115 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 SUPERFAMILY SSF51445 347 635 3.06E-93 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Pfam PF02929 Beta galactosidase small chain 765 1031 1.6E-76 T 13-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Pfam PF16353 Domain of unknown function(DUF4981) 650 738 1.6E-22 T 13-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 398 423 - T 13-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Gene3D G3DSA:2.60.40.10 233 345 5.5E-30 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_2126 ea7d3b51831eca63d5679f55869e5efb 1034 Pfam PF00703 Glycosyl hydrolases family 2 233 345 6.6E-17 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BMD_1108 cb9bf604449af563f0170b61a145b77e 120 Gene3D G3DSA:1.10.260.40 1 114 1.4E-26 T 13-10-2018 BMD_1108 cb9bf604449af563f0170b61a145b77e 120 Pfam PF01381 Helix-turn-helix 6 61 8.1E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_1108 cb9bf604449af563f0170b61a145b77e 120 SMART SM00530 5 61 6.8E-15 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_1108 cb9bf604449af563f0170b61a145b77e 120 SUPERFAMILY SSF47406 79 111 6.54E-6 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 BMD_1108 cb9bf604449af563f0170b61a145b77e 120 SUPERFAMILY SSF47413 2 66 2.34E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_4079 c8ac7d961c4c3bd773077f8274939f68 501 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 135 264 1.5E-10 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like BMD_1060 10adbc180a3b83177b704c1767d344a6 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 324 426 2.6E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1060 10adbc180a3b83177b704c1767d344a6 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 1.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1060 10adbc180a3b83177b704c1767d344a6 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 1.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1060 10adbc180a3b83177b704c1767d344a6 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 426 1.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1060 10adbc180a3b83177b704c1767d344a6 435 SUPERFAMILY SSF55874 284 426 5.76E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1060 10adbc180a3b83177b704c1767d344a6 435 SMART SM00387 317 429 4.6E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1060 10adbc180a3b83177b704c1767d344a6 435 Gene3D G3DSA:3.30.565.10 278 429 1.3E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0168 9acef1feecad208e137ce7e2d78e4009 141 Pfam PF10730 Protein of unknown function (DUF2521) 3 141 1.1E-35 T 13-10-2018 IPR019667 Uncharacterised protein family YbaK BMD_4130 ebbe48133888afb0b4c5229103e83d25 414 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 33 56 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 BMD_4130 ebbe48133888afb0b4c5229103e83d25 414 SUPERFAMILY SSF63411 224 399 2.87E-47 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BMD_4130 ebbe48133888afb0b4c5229103e83d25 414 Gene3D G3DSA:3.30.830.10 218 411 4.5E-56 T 13-10-2018 BMD_4130 ebbe48133888afb0b4c5229103e83d25 414 SUPERFAMILY SSF63411 3 204 9.59E-64 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BMD_4130 ebbe48133888afb0b4c5229103e83d25 414 Gene3D G3DSA:3.30.830.10 1 215 2.0E-81 T 13-10-2018 BMD_4130 ebbe48133888afb0b4c5229103e83d25 414 Pfam PF05193 Peptidase M16 inactive domain 166 338 3.9E-41 T 13-10-2018 IPR007863 Peptidase M16, C-terminal BMD_4130 ebbe48133888afb0b4c5229103e83d25 414 Pfam PF00675 Insulinase (Peptidase family M16) 12 159 2.9E-48 T 13-10-2018 IPR011765 Peptidase M16, N-terminal BMD_0835 795e5e9dc45e55bd043f582e48863062 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 467 4.0E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 501 4.0E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 481 4.0E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 520 4.0E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 Pfam PF13596 PAS domain 214 304 5.3E-5 T 13-10-2018 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 519 1.6E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0835 795e5e9dc45e55bd043f582e48863062 521 SUPERFAMILY SSF55874 382 519 5.63E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0835 795e5e9dc45e55bd043f582e48863062 521 Gene3D G3DSA:3.30.450.20 30 158 1.4E-33 T 13-10-2018 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 Pfam PF17203 Single cache domain 3 35 165 1.0E-16 T 13-10-2018 IPR033463 Single cache domain 3 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 Gene3D G3DSA:3.30.450.20 195 307 9.5E-22 T 13-10-2018 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 SMART SM00091 208 273 3.4E-5 T 13-10-2018 IPR000014 PAS domain BMD_0835 795e5e9dc45e55bd043f582e48863062 521 SUPERFAMILY SSF55890 315 384 8.24E-15 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 BMD_0835 795e5e9dc45e55bd043f582e48863062 521 SUPERFAMILY SSF55785 219 316 6.09E-8 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0835 795e5e9dc45e55bd043f582e48863062 521 SUPERFAMILY SSF103190 36 163 1.84E-30 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_0835 795e5e9dc45e55bd043f582e48863062 521 SMART SM00387 412 521 5.2E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0835 795e5e9dc45e55bd043f582e48863062 521 Gene3D G3DSA:3.30.565.10 367 520 3.5E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0835 795e5e9dc45e55bd043f582e48863062 521 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 315 370 3.3E-13 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 134 145 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 SUPERFAMILY SSF51569 1 285 9.38E-105 T 13-10-2018 BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 3 285 9.5E-133 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 285 1.9E-117 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 Gene3D G3DSA:3.20.20.70 1 285 1.8E-114 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 Pfam PF01116 Fructose-bisphosphate aldolase class-II 4 284 8.6E-104 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 74 87 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_5161 85fa1774cd9ec8e12f7c603a7a0c8901 285 PIRSF PIRSF001359 1 285 7.5E-128 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_4674 5e28b51fb12b35c867e2f1b1426928a5 195 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 7 189 1.1E-70 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 BMD_4674 5e28b51fb12b35c867e2f1b1426928a5 195 Gene3D G3DSA:3.40.50.300 1 192 4.8E-54 T 13-10-2018 BMD_4674 5e28b51fb12b35c867e2f1b1426928a5 195 Pfam PF01926 50S ribosome-binding GTPase 26 143 1.2E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4674 5e28b51fb12b35c867e2f1b1426928a5 195 SUPERFAMILY SSF52540 16 190 2.78E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4674 5e28b51fb12b35c867e2f1b1426928a5 195 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 11 193 28.291 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 BMD_3783 c424fba0022271070107684de7a4db9c 170 Pfam PF00994 Probable molybdopterin binding domain 18 161 2.1E-35 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_3783 c424fba0022271070107684de7a4db9c 170 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 14 157 2.0E-35 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_3783 c424fba0022271070107684de7a4db9c 170 SUPERFAMILY SSF53218 7 167 1.57E-42 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_3783 c424fba0022271070107684de7a4db9c 170 SMART SM00852 17 162 4.3E-27 T 13-10-2018 IPR001453 MoaB/Mog domain BMD_3783 c424fba0022271070107684de7a4db9c 170 PIRSF PIRSF006443 1 170 3.0E-65 T 13-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 BMD_3783 c424fba0022271070107684de7a4db9c 170 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 75 88 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 BMD_3783 c424fba0022271070107684de7a4db9c 170 Gene3D G3DSA:3.40.980.10 1 169 8.5E-51 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily BMD_4612 f257d8e14838609df5294ddaae844625 593 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 4 587 35.015 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 BMD_4612 f257d8e14838609df5294ddaae844625 593 Gene3D G3DSA:3.30.1360.30 278 422 1.2E-198 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 BMD_4612 f257d8e14838609df5294ddaae844625 593 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 4 588 1.5E-266 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 BMD_4612 f257d8e14838609df5294ddaae844625 593 Gene3D G3DSA:3.30.930.10 122 585 1.2E-198 T 13-10-2018 BMD_4612 f257d8e14838609df5294ddaae844625 593 Gene3D G3DSA:2.40.50.140 1 110 6.4E-35 T 13-10-2018 BMD_4612 f257d8e14838609df5294ddaae844625 593 Pfam PF02938 GAD domain 314 408 4.1E-34 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 BMD_4612 f257d8e14838609df5294ddaae844625 593 SUPERFAMILY SSF55681 115 587 5.38E-111 T 13-10-2018 BMD_4612 f257d8e14838609df5294ddaae844625 593 Pfam PF00152 tRNA synthetases class II (D, K and N) 123 560 6.1E-114 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4612 f257d8e14838609df5294ddaae844625 593 SUPERFAMILY SSF50249 5 109 7.05E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4612 f257d8e14838609df5294ddaae844625 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 196 208 9.5E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4612 f257d8e14838609df5294ddaae844625 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 213 226 9.5E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4612 f257d8e14838609df5294ddaae844625 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 521 535 9.5E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4612 f257d8e14838609df5294ddaae844625 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 477 493 9.5E-27 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4612 f257d8e14838609df5294ddaae844625 593 Pfam PF01336 OB-fold nucleic acid binding domain 21 106 3.7E-16 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BMD_4612 f257d8e14838609df5294ddaae844625 593 SUPERFAMILY SSF55261 295 422 9.48E-45 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 BMD_3455 ddc9a5a3e2d4e05797149916b1049c7c 240 Pfam PF01909 Nucleotidyltransferase domain 29 66 4.3E-5 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 BMD_3455 ddc9a5a3e2d4e05797149916b1049c7c 240 SUPERFAMILY SSF81301 6 108 6.29E-11 T 13-10-2018 BMD_3455 ddc9a5a3e2d4e05797149916b1049c7c 240 Gene3D G3DSA:3.30.460.10 1 118 7.0E-11 T 13-10-2018 BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 282 7.2E-101 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 Pfam PF01261 Xylose isomerase-like TIM barrel 21 237 2.8E-38 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 285 42.535 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 SMART SM00518 3 285 6.7E-127 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 SUPERFAMILY SSF51658 2 291 5.76E-102 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 Gene3D G3DSA:3.20.20.150 1 295 7.7E-102 T 13-10-2018 BMD_4520 ad41ad2ed0db9e6296ba7e35f66ac6cd 295 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 213 229 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 Gene3D G3DSA:3.20.20.450 1 228 1.6E-69 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 SUPERFAMILY SSF103190 262 399 3.69E-41 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 Pfam PF10388 EAL-domain associated signalling protein domain 239 403 1.1E-71 T 13-10-2018 IPR018842 YkuI, C-terminal BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 Pfam PF00563 EAL domain 15 235 5.7E-38 T 13-10-2018 IPR001633 EAL domain BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 Gene3D G3DSA:3.30.450.20 290 403 3.4E-47 T 13-10-2018 BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 SUPERFAMILY SSF141868 10 237 5.23E-50 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 Gene3D G3DSA:1.20.5.170 245 289 7.8E-10 T 13-10-2018 BMD_1304 8ec74c15f4e57154fe52aa39571ce436 403 SMART SM00052 2 240 1.8E-37 T 13-10-2018 IPR001633 EAL domain BMD_1223 b9e06321258052921aa2bb3d8de3813e 276 Gene3D G3DSA:3.40.50.620 2 276 8.1E-77 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_1223 b9e06321258052921aa2bb3d8de3813e 276 SUPERFAMILY SSF52402 4 275 6.28E-83 T 13-10-2018 BMD_1223 b9e06321258052921aa2bb3d8de3813e 276 TIGRFAM TIGR00552 nadE: NAD+ synthetase 18 276 1.7E-75 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 BMD_1223 b9e06321258052921aa2bb3d8de3813e 276 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 19 270 47.662 T 13-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 BMD_1223 b9e06321258052921aa2bb3d8de3813e 276 Pfam PF02540 NAD synthase 24 267 6.8E-72 T 13-10-2018 IPR022310 NAD/GMP synthase BMD_0934 8da4712a5b230abd1e638f4caf75285c 171 Gene3D G3DSA:3.40.630.30 8 166 2.1E-5 T 13-10-2018 BMD_0934 8da4712a5b230abd1e638f4caf75285c 171 SUPERFAMILY SSF55729 103 154 1.29E-5 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Gene3D G3DSA:1.10.10.10 2 67 3.0E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 SUPERFAMILY SSF52794 393 471 1.31E-12 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Gene3D G3DSA:1.10.1790.10 286 386 9.0E-17 T 13-10-2018 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 528 668 4.1E-33 T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Pfam PF05043 Mga helix-turn-helix domain 86 162 1.9E-5 T 13-10-2018 IPR007737 Mga helix-turn-helix domain BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 SUPERFAMILY SSF55804 523 668 3.01E-37 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 SUPERFAMILY SSF63520 183 276 1.06E-5 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 SUPERFAMILY SSF46785 2 66 1.21E-6 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 SUPERFAMILY SSF46785 89 132 5.57E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Gene3D G3DSA:3.40.930.10 522 672 1.9E-56 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 396 450 9.4E-7 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Pfam PF08279 HTH domain 5 48 7.7E-10 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Pfam PF00874 PRD domain 294 383 1.5E-20 T 13-10-2018 IPR011608 PRD domain GO:0006355 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 574 590 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 Gene3D G3DSA:3.40.50.2300 394 477 8.0E-14 T 13-10-2018 BMD_1027 fbd63ef7ccbadc3faabaec75b6a7dd14 672 SUPERFAMILY SSF63520 289 385 1.57E-22 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 BMD_3890 14506d47970980145e3c0aad657839cc 477 ProSitePatterns PS00218 Amino acid permeases signature. 44 75 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_3890 14506d47970980145e3c0aad657839cc 477 PIRSF PIRSF006060 4 475 1.3E-90 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3890 14506d47970980145e3c0aad657839cc 477 Gene3D G3DSA:1.20.1740.10 10 475 6.8E-71 T 13-10-2018 BMD_3890 14506d47970980145e3c0aad657839cc 477 Pfam PF00324 Amino acid permease 19 460 9.0E-126 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_3288 a69f928053ef17947ec6d0cfa92bfac9 311 Gene3D G3DSA:3.20.20.100 1 311 1.0E-92 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_3288 a69f928053ef17947ec6d0cfa92bfac9 311 Pfam PF00248 Aldo/keto reductase family 16 302 6.1E-59 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_3288 a69f928053ef17947ec6d0cfa92bfac9 311 PRINTS PR00069 Aldo-keto reductase signature 106 124 5.7E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3288 a69f928053ef17947ec6d0cfa92bfac9 311 PRINTS PR00069 Aldo-keto reductase signature 190 219 5.7E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3288 a69f928053ef17947ec6d0cfa92bfac9 311 PRINTS PR00069 Aldo-keto reductase signature 239 263 5.7E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_3288 a69f928053ef17947ec6d0cfa92bfac9 311 SUPERFAMILY SSF51430 1 306 1.01E-75 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.5E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 SUPERFAMILY SSF51735 6 251 2.68E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1054 9b2125c978f935e28de966d726f89a44 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1054 9b2125c978f935e28de966d726f89a44 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 251 3.5E-65 T 13-10-2018 BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 7.5E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 7.5E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 7.5E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1054 9b2125c978f935e28de966d726f89a44 261 Gene3D G3DSA:3.40.50.720 1 261 2.6E-90 T 13-10-2018 BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 52 71 2.7E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 41 52 2.7E-6 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 SUPERFAMILY SSF46785 12 85 2.43E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 81 1.8E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 SMART SM00895 91 214 1.6E-4 T 13-10-2018 IPR011711 GntR, C-terminal BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 Gene3D G3DSA:1.20.120.530 84 221 2.2E-14 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 SMART SM00345 23 81 4.7E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 1.3E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 1.3E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 Gene3D G3DSA:1.10.10.10 15 82 4.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 Pfam PF07729 FCD domain 95 209 5.4E-16 T 13-10-2018 IPR011711 GntR, C-terminal BMD_3904 522c297c1a28d219f3ef5e6364c69646 226 SUPERFAMILY SSF48008 87 215 3.66E-13 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_5065 6625bec8b4b14a5eda419dede9fb855a 64 Pfam PF04024 PspC domain 2 59 2.8E-17 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 SUPERFAMILY SSF51569 30 350 1.1E-101 T 13-10-2018 BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 94 350 7.7E-120 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 SMART SM00830 9 88 4.3E-22 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 Pfam PF00793 DAHP synthetase I family 112 349 9.8E-80 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 Pfam PF01817 Chorismate mutase type II 9 86 2.2E-19 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 Gene3D G3DSA:1.20.59.10 7 91 1.7E-28 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 Gene3D G3DSA:3.20.20.70 92 355 6.8E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3030 491bc4554cbbde9a806eb61a4c854374 357 TIGRFAM TIGR01801 CM_A: chorismate mutase 1 100 8.8E-42 T 13-10-2018 IPR010954 Chorismate mutase, Firmicutes/Deinococcus KEGG: 00400+2.5.1.54+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6164|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_0602 fb998302b3f9e26174d77f18b71f83eb 310 SUPERFAMILY SSF53800 3 308 9.97E-88 T 13-10-2018 BMD_0602 fb998302b3f9e26174d77f18b71f83eb 310 Gene3D G3DSA:3.40.50.1400 148 289 8.6E-108 T 13-10-2018 BMD_0602 fb998302b3f9e26174d77f18b71f83eb 310 ProSitePatterns PS00534 Ferrochelatase signature. 178 196 - T 13-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BMD_0602 fb998302b3f9e26174d77f18b71f83eb 310 TIGRFAM TIGR00109 hemH: ferrochelatase 2 307 4.2E-98 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BMD_0602 fb998302b3f9e26174d77f18b71f83eb 310 Gene3D G3DSA:3.40.50.1400 8 304 8.6E-108 T 13-10-2018 BMD_0602 fb998302b3f9e26174d77f18b71f83eb 310 Pfam PF00762 Ferrochelatase 7 307 9.5E-84 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BMD_0602 fb998302b3f9e26174d77f18b71f83eb 310 Hamap MF_00323 Ferrochelatase [hemH]. 4 308 31.666 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BMD_3532 e6980fb9b68bab26aaf740088b801c1e 543 Gene3D G3DSA:3.30.420.40 267 535 3.0E-18 T 13-10-2018 BMD_3532 e6980fb9b68bab26aaf740088b801c1e 543 Gene3D G3DSA:3.30.420.40 13 266 8.6E-37 T 13-10-2018 BMD_3532 e6980fb9b68bab26aaf740088b801c1e 543 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 279 476 2.4E-33 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BMD_3532 e6980fb9b68bab26aaf740088b801c1e 543 SUPERFAMILY SSF53067 275 521 1.25E-13 T 13-10-2018 BMD_3532 e6980fb9b68bab26aaf740088b801c1e 543 SUPERFAMILY SSF53067 18 265 1.05E-31 T 13-10-2018 BMD_3532 e6980fb9b68bab26aaf740088b801c1e 543 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 19 263 3.6E-16 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BMD_4704 c9d42edd179e68ec5f84513eaa53b66f 403 Pfam PF00999 Sodium/hydrogen exchanger family 12 377 2.7E-61 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BMD_4704 c9d42edd179e68ec5f84513eaa53b66f 403 Gene3D G3DSA:1.20.1530.20 2 384 1.6E-65 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily BMD_4637 656e595171e756e820535d472ab4a4da 297 Gene3D G3DSA:3.20.20.70 123 265 8.3E-103 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4637 656e595171e756e820535d472ab4a4da 297 SUPERFAMILY SSF51690 109 275 6.28E-57 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BMD_4637 656e595171e756e820535d472ab4a4da 297 Gene3D G3DSA:3.90.1170.20 14 273 8.3E-103 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 BMD_4637 656e595171e756e820535d472ab4a4da 297 SUPERFAMILY SSF54675 2 108 1.33E-30 T 13-10-2018 BMD_4637 656e595171e756e820535d472ab4a4da 297 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 10 274 6.2E-102 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 BMD_4637 656e595171e756e820535d472ab4a4da 297 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 18 107 1.3E-28 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 BMD_4637 656e595171e756e820535d472ab4a4da 297 PIRSF PIRSF006250 1 278 2.7E-98 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 BMD_4637 656e595171e756e820535d472ab4a4da 297 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 109 274 2.6E-60 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 SUPERFAMILY SSF46785 2 73 2.53E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 Gene3D G3DSA:1.10.10.10 1 73 6.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 Gene3D G3DSA:3.40.50.2020 74 273 2.7E-61 T 13-10-2018 BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 TIGRFAM TIGR01743 purR_Bsub: pur operon repressor PurR 3 270 1.8E-126 T 13-10-2018 IPR010078 Pur operon repressor GO:0003677|GO:0045892|GO:0045982 BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 Pfam PF09182 Bacterial purine repressor, N-terminal 4 73 3.5E-31 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 SUPERFAMILY SSF53271 94 256 1.7E-40 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 ProDom PD029816 REPRESSOR OPERON PUR TRANSCRIPTION PURINE TRANSCRIPTIONAL PURR REGULATION DNA-BINDING GLYCOSYLTRANSFERASE 9 74 1.0E-24 T 13-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 BMD_0064 0ff462051d5413fb0bb793a460bcf525 273 Pfam PF00156 Phosphoribosyl transferase domain 107 265 2.7E-24 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 SMART SM00866 87 226 2.8E-29 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 SMART SM00345 7 66 3.2E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 SUPERFAMILY SSF46785 5 75 3.52E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 Pfam PF07702 UTRA domain 90 223 5.2E-28 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 Gene3D G3DSA:1.10.10.10 1 70 2.0E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 Gene3D G3DSA:3.40.1410.10 71 236 2.9E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 6.3E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3358 89ad51cfed85ab77bbd08aa9cdd08968 236 SUPERFAMILY SSF64288 76 228 2.04E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 SUPERFAMILY SSF53383 3 363 1.86E-86 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 369 193.774 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 Gene3D G3DSA:3.90.1150.10 8 353 3.4E-115 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 6 361 4.6E-157 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 Pfam PF00266 Aminotransferase class-V 33 305 7.4E-31 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 Gene3D G3DSA:3.40.640.10 16 262 3.4E-115 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 PIRSF PIRSF000524 1 369 1.6E-59 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 BMD_3230 f8a051308247ef22c2c7b00fa2267d1e 369 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 2 363 2.0E-182 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BMD_3446 353251a4f9a2059cd3d20794bddf1fed 241 Gene3D G3DSA:3.40.50.300 3 239 1.1E-65 T 13-10-2018 BMD_3446 353251a4f9a2059cd3d20794bddf1fed 241 SUPERFAMILY SSF52540 3 230 2.21E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3446 353251a4f9a2059cd3d20794bddf1fed 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_3446 353251a4f9a2059cd3d20794bddf1fed 241 SMART SM00382 30 215 7.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3446 353251a4f9a2059cd3d20794bddf1fed 241 Pfam PF00005 ABC transporter 22 166 1.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1689 6998e61853c0d788a50ee110150a8644 105 Gene3D G3DSA:1.10.760.20 22 105 2.0E-33 T 13-10-2018 IPR038292 YmfJ/YflH superfamily BMD_1689 6998e61853c0d788a50ee110150a8644 105 Pfam PF11588 Protein of unknown function (DUF3243) 27 104 3.4E-30 T 13-10-2018 IPR021637 Protein of unknown function DUF3243 BMD_4562 e2fc9f3ec372969ec7cb27e124183ccc 188 PIRSF PIRSF006019 1 151 2.8E-59 T 13-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BMD_4562 e2fc9f3ec372969ec7cb27e124183ccc 188 Gene3D G3DSA:3.40.140.10 2 148 4.0E-47 T 13-10-2018 BMD_4562 e2fc9f3ec372969ec7cb27e124183ccc 188 TIGRFAM TIGR02571 ComEB: ComE operon protein 2 2 150 3.3E-86 T 13-10-2018 IPR013404 Competence operon E, ComEB BMD_4562 e2fc9f3ec372969ec7cb27e124183ccc 188 SUPERFAMILY SSF53927 7 139 1.11E-40 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BMD_4562 e2fc9f3ec372969ec7cb27e124183ccc 188 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 70 106 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BMD_4562 e2fc9f3ec372969ec7cb27e124183ccc 188 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 116 1.5E-28 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 Gene3D G3DSA:1.10.10.10 1 83 1.9E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 Gene3D G3DSA:3.40.190.290 84 279 1.1E-23 T 13-10-2018 BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 Pfam PF03466 LysR substrate binding domain 89 278 2.0E-24 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 SUPERFAMILY SSF46785 4 108 1.25E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.7E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3453 ff808ad9d387d211e61eede95cf41af7 280 SUPERFAMILY SSF53850 88 278 3.1E-21 T 13-10-2018 BMD_0512 e71df1036778d8735e150d2240386d60 513 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 429 1.0E-78 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_0512 e71df1036778d8735e150d2240386d60 513 SUPERFAMILY SSF53850 37 506 5.74E-108 T 13-10-2018 BMD_0512 e71df1036778d8735e150d2240386d60 513 PIRSF PIRSF002741 1 512 5.8E-87 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_0512 e71df1036778d8735e150d2240386d60 513 Gene3D G3DSA:3.10.105.10 262 469 1.1E-129 T 13-10-2018 BMD_0512 e71df1036778d8735e150d2240386d60 513 Gene3D G3DSA:3.40.190.10 54 261 1.1E-129 T 13-10-2018 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 107 128 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 282 303 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 19 35 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 254 274 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 80 104 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 137 159 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 49 68 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 PRINTS PR01035 Tetracycline resistance protein signature 165 185 9.0E-42 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 Pfam PF07690 Major Facilitator Superfamily 14 362 7.2E-47 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 ProSitePatterns PS00216 Sugar transport proteins signature 1. 67 83 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 SUPERFAMILY SSF103473 11 394 6.8E-61 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1743 0464e41ead470db2a8ba7fd01a94adea 399 Gene3D G3DSA:1.20.1250.20 7 396 3.7E-65 T 13-10-2018 BMD_0255 92c810da1e32ebceb1db302348f1376f 212 Pfam PF06971 Putative DNA-binding protein N-terminus 7 55 6.4E-20 T 13-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 BMD_0255 92c810da1e32ebceb1db302348f1376f 212 SMART SM00881 81 181 3.3E-20 T 13-10-2018 IPR003781 CoA-binding GO:0048037 BMD_0255 92c810da1e32ebceb1db302348f1376f 212 SUPERFAMILY SSF46785 9 80 2.23E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0255 92c810da1e32ebceb1db302348f1376f 212 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 3 210 38.997 T 13-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 BMD_0255 92c810da1e32ebceb1db302348f1376f 212 Gene3D G3DSA:1.10.10.10 1 82 4.0E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0255 92c810da1e32ebceb1db302348f1376f 212 Pfam PF02629 CoA binding domain 84 179 5.8E-29 T 13-10-2018 IPR003781 CoA-binding GO:0048037 BMD_0255 92c810da1e32ebceb1db302348f1376f 212 SUPERFAMILY SSF51735 84 207 3.04E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0255 92c810da1e32ebceb1db302348f1376f 212 Gene3D G3DSA:3.40.50.720 83 211 1.2E-46 T 13-10-2018 BMD_2580 18f4f3c2e3b91c71f84da7db558c0a91 120 Pfam PF02656 Domain of unknown function (DUF202) 13 84 1.0E-13 T 13-10-2018 IPR003807 Domain of unknown function DUF202 BMD_3625 f369fc02d35a720981b98886c1fafcbc 268 Gene3D G3DSA:2.40.50.1020 159 262 1.1E-16 T 13-10-2018 BMD_3625 f369fc02d35a720981b98886c1fafcbc 268 Pfam PF00072 Response regulator receiver domain 35 144 1.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3625 f369fc02d35a720981b98886c1fafcbc 268 SMART SM00850 171 267 2.7E-17 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_3625 f369fc02d35a720981b98886c1fafcbc 268 Gene3D G3DSA:3.40.50.2300 27 158 1.0E-33 T 13-10-2018 BMD_3625 f369fc02d35a720981b98886c1fafcbc 268 Pfam PF04397 LytTr DNA-binding domain 172 264 1.5E-16 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_3625 f369fc02d35a720981b98886c1fafcbc 268 SMART SM00448 33 144 8.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3625 f369fc02d35a720981b98886c1fafcbc 268 SUPERFAMILY SSF52172 31 151 9.96E-33 T 13-10-2018 IPR011006 CheY-like superfamily BMD_5125 4d74f2c0f67f25deb1fd220fb9a1d31f 274 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BMD_5125 4d74f2c0f67f25deb1fd220fb9a1d31f 274 Pfam PF00460 Flagella basal body rod protein 5 35 2.8E-9 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BMD_5125 4d74f2c0f67f25deb1fd220fb9a1d31f 274 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 160 3.1E-28 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BMD_5125 4d74f2c0f67f25deb1fd220fb9a1d31f 274 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 194 268 7.1E-19 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BMD_5125 4d74f2c0f67f25deb1fd220fb9a1d31f 274 SUPERFAMILY SSF117143 113 231 9.81E-18 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BMD_0065 90b43649ed57ab42be881af483cbcbd5 125 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 99 117 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 BMD_0065 90b43649ed57ab42be881af483cbcbd5 125 SUPERFAMILY SSF55298 2 124 2.04E-49 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BMD_0065 90b43649ed57ab42be881af483cbcbd5 125 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 122 1.1E-54 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 BMD_0065 90b43649ed57ab42be881af483cbcbd5 125 Gene3D G3DSA:3.30.1330.40 2 124 5.9E-55 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BMD_0065 90b43649ed57ab42be881af483cbcbd5 125 Pfam PF01042 Endoribonuclease L-PSP 6 122 3.9E-47 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 17 411 3.1E-161 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 411 144.331 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 38 411 2.0E-157 T 13-10-2018 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 Pfam PF01960 ArgJ family 27 411 1.8E-151 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 SUPERFAMILY SSF56266 22 407 7.06E-139 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 Gene3D G3DSA:3.10.20.340 283 411 9.3E-51 T 13-10-2018 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 Gene3D G3DSA:3.60.70.12 7 197 5.8E-70 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 BMD_0679 e1727317d112612f06bce7db1d34d2b0 411 Gene3D G3DSA:3.30.2330.10 198 282 8.1E-33 T 13-10-2018 BMD_0589 f77ac86da42d7d0a853c5d2e999ec585 184 Pfam PF03551 Transcriptional regulator PadR-like family 8 81 8.8E-18 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal BMD_0589 f77ac86da42d7d0a853c5d2e999ec585 184 SUPERFAMILY SSF46785 4 182 2.84E-41 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0589 f77ac86da42d7d0a853c5d2e999ec585 184 Gene3D G3DSA:1.10.10.10 3 88 3.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0589 f77ac86da42d7d0a853c5d2e999ec585 184 Pfam PF10400 Virulence activator alpha C-term 94 180 9.9E-17 T 13-10-2018 IPR018309 Transcription regulator PadR, C-terminal BMD_0702 e1f9e3914f896f60f27bc2de7efbc878 321 Gene3D G3DSA:1.10.3720.10 86 313 3.6E-20 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0702 e1f9e3914f896f60f27bc2de7efbc878 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 319 1.5E-39 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0702 e1f9e3914f896f60f27bc2de7efbc878 321 SUPERFAMILY SSF161098 91 302 7.19E-18 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1156 bacd6667efe31a1da4d46d24a21dd905 152 Gene3D G3DSA:3.40.630.30 2 152 3.0E-40 T 13-10-2018 BMD_1156 bacd6667efe31a1da4d46d24a21dd905 152 Pfam PF00583 Acetyltransferase (GNAT) family 26 141 3.8E-18 T 13-10-2018 IPR000182 GNAT domain BMD_1156 bacd6667efe31a1da4d46d24a21dd905 152 SUPERFAMILY SSF55729 4 150 6.25E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 SMART SM00839 195 424 9.5E-94 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 Gene3D G3DSA:1.10.8.1210 379 426 2.5E-17 T 13-10-2018 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 SUPERFAMILY SSF51735 193 425 1.24E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 PIRSF PIRSF000185 11 426 8.8E-172 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 SUPERFAMILY SSF53223 17 195 1.95E-65 T 13-10-2018 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 112 125 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 48 175 6.7E-53 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 Gene3D G3DSA:3.40.50.720 181 353 2.3E-143 T 13-10-2018 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 Gene3D G3DSA:3.40.50.10860 45 180 2.3E-143 T 13-10-2018 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 Gene3D G3DSA:1.10.8.1210 20 354 2.3E-143 T 13-10-2018 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 193 424 9.1E-78 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 226 246 3.7E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 104 118 3.7E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 184 206 3.7E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4340 20ccb3b6542231f73cd0ce8d514828dd 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 352 363 3.7E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 Gene3D G3DSA:3.40.50.1100 13 209 5.2E-187 T 13-10-2018 BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 PIRSF PIRSF001413 1 400 2.7E-170 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 5 394 52.74 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 10 392 6.9E-191 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 84 98 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 Gene3D G3DSA:3.40.50.1100 57 387 5.2E-187 T 13-10-2018 BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 55 381 8.9E-48 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_4306 11ec2b7d6139d3e392fc5dd50dfb539d 404 SUPERFAMILY SSF53686 6 392 2.36E-146 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_2477 fdcea00d1f61e883022ddc7514fa3aa4 132 PIRSF PIRSF021700 1 132 2.1E-41 T 13-10-2018 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase BMD_2477 fdcea00d1f61e883022ddc7514fa3aa4 132 SUPERFAMILY SSF54593 1 131 4.78E-36 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2477 fdcea00d1f61e883022ddc7514fa3aa4 132 Gene3D G3DSA:3.30.720.100 6 71 8.4E-32 T 13-10-2018 BMD_2477 fdcea00d1f61e883022ddc7514fa3aa4 132 Gene3D G3DSA:3.30.720.110 72 132 1.2E-29 T 13-10-2018 BMD_2477 fdcea00d1f61e883022ddc7514fa3aa4 132 PIRSF PIRSF500687 1 132 2.4E-61 T 13-10-2018 IPR027259 Predicted 3-demethylubiquinone-9 3-methyltransferase, bacterial BMD_2477 fdcea00d1f61e883022ddc7514fa3aa4 132 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 2 128 5.2E-39 T 13-10-2018 IPR028973 PhnB-like BMD_2552 a13f5507b7adcb627c728934b045ce2a 547 Pfam PF04411 PD-(D/E)XK nuclease superfamily 363 499 2.3E-30 T 13-10-2018 IPR007505 PD-(D/E)XK nuclease superfamily 7 BMD_2552 a13f5507b7adcb627c728934b045ce2a 547 Pfam PF09823 Domain of unknown function (DUF2357) 91 340 2.7E-44 T 13-10-2018 IPR018633 Domain of unknown function DUF2357 BMD_0923 c8c142ed8df4eef99e83f2c831bea708 129 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 129 30.222 T 13-10-2018 IPR023064 D-ribose pyranase GO:0016872 BMD_0923 c8c142ed8df4eef99e83f2c831bea708 129 Pfam PF05025 RbsD / FucU transport protein family 1 128 2.7E-43 T 13-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 BMD_0923 c8c142ed8df4eef99e83f2c831bea708 129 Gene3D G3DSA:3.40.1650.10 8 125 1.6E-34 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 BMD_0923 c8c142ed8df4eef99e83f2c831bea708 129 SUPERFAMILY SSF102546 1 129 9.81E-39 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 BMD_4438 f59c6ce41082cba14edbf09cde3c7b77 575 Gene3D G3DSA:3.40.50.300 254 566 1.2E-52 T 13-10-2018 BMD_4438 f59c6ce41082cba14edbf09cde3c7b77 575 Gene3D G3DSA:3.40.50.300 1 243 3.9E-45 T 13-10-2018 BMD_4438 f59c6ce41082cba14edbf09cde3c7b77 575 Pfam PF13476 AAA domain 4 220 4.7E-18 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain BMD_4438 f59c6ce41082cba14edbf09cde3c7b77 575 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 566 2.9E-197 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BMD_4438 f59c6ce41082cba14edbf09cde3c7b77 575 SUPERFAMILY SSF52540 2 218 3.0E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4438 f59c6ce41082cba14edbf09cde3c7b77 575 PIRSF PIRSF003128 1 571 5.9E-187 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BMD_4438 f59c6ce41082cba14edbf09cde3c7b77 575 SUPERFAMILY SSF52540 4 520 4.2E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4974 7df2b142474421e152a8577470b4f6cb 100 Gene3D G3DSA:3.30.1980.10 1 100 5.1E-23 T 13-10-2018 IPR036493 Hypothetical protein YunC superfamily BMD_4974 7df2b142474421e152a8577470b4f6cb 100 Pfam PF08827 Domain of unknown function (DUF1805) 37 99 5.6E-23 T 13-10-2018 IPR014931 Protein of unknown function DUF1805 BMD_4974 7df2b142474421e152a8577470b4f6cb 100 SUPERFAMILY SSF102891 1 99 4.18E-31 T 13-10-2018 IPR036493 Hypothetical protein YunC superfamily BMD_2267 d5b2b559dffa7dfc8a48472f6068b1f5 186 Pfam PF12464 Maltose acetyltransferase 7 58 1.2E-18 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 BMD_2267 d5b2b559dffa7dfc8a48472f6068b1f5 186 SMART SM01266 5 59 9.4E-23 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 BMD_2267 d5b2b559dffa7dfc8a48472f6068b1f5 186 Gene3D G3DSA:2.160.10.10 1 184 8.7E-71 T 13-10-2018 BMD_2267 d5b2b559dffa7dfc8a48472f6068b1f5 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 131 165 7.5E-11 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_2267 d5b2b559dffa7dfc8a48472f6068b1f5 186 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 95 110 0.04 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_2267 d5b2b559dffa7dfc8a48472f6068b1f5 186 SUPERFAMILY SSF51161 1 184 2.36E-53 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_2267 d5b2b559dffa7dfc8a48472f6068b1f5 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 36 46 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 Gene3D G3DSA:3.50.50.60 146 265 3.7E-112 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 Gene3D G3DSA:3.30.390.30 339 459 1.9E-38 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 458 5.9E-170 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PIRSF PIRSF000350 2 453 1.1E-81 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 1.8E-37 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 191 1.8E-37 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 134 152 1.8E-37 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.8E-37 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 274 1.8E-37 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 SUPERFAMILY SSF51905 4 366 4.44E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 Gene3D G3DSA:3.50.50.60 5 325 3.7E-112 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 448 1.5E-32 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 146 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 273 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 173 198 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 1.1E-62 T 13-10-2018 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 321 2.7E-68 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_1875 cf5438eea027ae4b46935220aa33b05a 459 SUPERFAMILY SSF55424 336 458 3.44E-36 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_2405 34e43fa80cc5f923813c30c759ef1414 299 Pfam PF00892 EamA-like transporter family 8 138 3.0E-26 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2405 34e43fa80cc5f923813c30c759ef1414 299 Pfam PF00892 EamA-like transporter family 150 282 3.6E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2405 34e43fa80cc5f923813c30c759ef1414 299 SUPERFAMILY SSF103481 41 141 8.5E-18 T 13-10-2018 BMD_2405 34e43fa80cc5f923813c30c759ef1414 299 SUPERFAMILY SSF103481 189 284 1.29E-10 T 13-10-2018 BMD_1540 2dd400aac97f263a53bbb2a137bfb331 396 Gene3D G3DSA:3.90.1150.10 38 387 6.3E-139 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1540 2dd400aac97f263a53bbb2a137bfb331 396 TIGRFAM TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase 10 396 9.7E-188 T 13-10-2018 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type BMD_1540 2dd400aac97f263a53bbb2a137bfb331 396 Pfam PF00155 Aminotransferase class I and II 43 384 8.5E-66 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_1540 2dd400aac97f263a53bbb2a137bfb331 396 SUPERFAMILY SSF53383 7 394 2.45E-111 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1540 2dd400aac97f263a53bbb2a137bfb331 396 Gene3D G3DSA:3.40.640.10 58 294 6.3E-139 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1540 2dd400aac97f263a53bbb2a137bfb331 396 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 BMD_4537 4937df547cc26afab7f56071045355a7 156 Pfam PF02130 Uncharacterized protein family UPF0054 14 152 8.2E-48 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BMD_4537 4937df547cc26afab7f56071045355a7 156 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 153 1.0E-43 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BMD_4537 4937df547cc26afab7f56071045355a7 156 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 156 24.332 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 BMD_4537 4937df547cc26afab7f56071045355a7 156 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 122 132 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site BMD_4537 4937df547cc26afab7f56071045355a7 156 SUPERFAMILY SSF55486 2 155 1.73E-46 T 13-10-2018 BMD_4537 4937df547cc26afab7f56071045355a7 156 Gene3D G3DSA:3.40.390.30 2 156 5.6E-48 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 BMD_1856 4a8a73948498109bc77416992a0aed48 298 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 7.0E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1856 4a8a73948498109bc77416992a0aed48 298 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 51 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_1856 4a8a73948498109bc77416992a0aed48 298 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 1.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1856 4a8a73948498109bc77416992a0aed48 298 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 1.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1856 4a8a73948498109bc77416992a0aed48 298 SUPERFAMILY SSF46689 6 64 1.65E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1856 4a8a73948498109bc77416992a0aed48 298 Gene3D G3DSA:1.10.357.10 1 138 4.8E-21 T 13-10-2018 BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 256 1.3E-61 T 13-10-2018 BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 Gene3D G3DSA:3.40.50.720 1 258 5.1E-77 T 13-10-2018 BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 SUPERFAMILY SSF51735 3 257 1.26E-78 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 7.3E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 7.3E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 7.3E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 7.3E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 7.3E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 7.3E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 5 258 5.0E-109 T 13-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2297 b9c25a82a67d9fcfc648ddcfb4550a72 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4550 12928b8ca1184752093897a81957b108 376 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 372 41.878 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BMD_4550 12928b8ca1184752093897a81957b108 376 SUPERFAMILY SSF49493 112 262 1.83E-20 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BMD_4550 12928b8ca1184752093897a81957b108 376 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 13-10-2018 IPR018253 DnaJ domain, conserved site BMD_4550 12928b8ca1184752093897a81957b108 376 Pfam PF01556 DnaJ C terminal domain 118 335 4.8E-45 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal BMD_4550 12928b8ca1184752093897a81957b108 376 Gene3D G3DSA:1.10.287.110 1 110 2.2E-38 T 13-10-2018 IPR036869 Chaperone J-domain superfamily BMD_4550 12928b8ca1184752093897a81957b108 376 Gene3D G3DSA:2.60.260.20 256 366 9.3E-32 T 13-10-2018 BMD_4550 12928b8ca1184752093897a81957b108 376 Pfam PF00684 DnaJ central domain 145 209 2.6E-15 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 BMD_4550 12928b8ca1184752093897a81957b108 376 SUPERFAMILY SSF57938 132 213 9.16E-20 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BMD_4550 12928b8ca1184752093897a81957b108 376 Pfam PF00226 DnaJ domain 5 66 9.1E-26 T 13-10-2018 IPR001623 DnaJ domain BMD_4550 12928b8ca1184752093897a81957b108 376 SUPERFAMILY SSF46565 1 102 1.02E-35 T 13-10-2018 IPR036869 Chaperone J-domain superfamily BMD_4550 12928b8ca1184752093897a81957b108 376 SUPERFAMILY SSF49493 260 346 1.57E-25 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BMD_4550 12928b8ca1184752093897a81957b108 376 Gene3D G3DSA:2.60.260.20 115 251 1.2E-37 T 13-10-2018 BMD_4550 12928b8ca1184752093897a81957b108 376 PRINTS PR00625 DnaJ domain signature 41 61 6.8E-30 T 13-10-2018 IPR001623 DnaJ domain BMD_4550 12928b8ca1184752093897a81957b108 376 PRINTS PR00625 DnaJ domain signature 7 25 6.8E-30 T 13-10-2018 IPR001623 DnaJ domain BMD_4550 12928b8ca1184752093897a81957b108 376 PRINTS PR00625 DnaJ domain signature 61 80 6.8E-30 T 13-10-2018 IPR001623 DnaJ domain BMD_4550 12928b8ca1184752093897a81957b108 376 PRINTS PR00625 DnaJ domain signature 25 40 6.8E-30 T 13-10-2018 IPR001623 DnaJ domain BMD_4550 12928b8ca1184752093897a81957b108 376 SMART SM00271 4 61 1.7E-30 T 13-10-2018 IPR001623 DnaJ domain BMD_4550 12928b8ca1184752093897a81957b108 376 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 2.1E-143 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BMD_4550 12928b8ca1184752093897a81957b108 376 Gene3D G3DSA:2.10.230.10 145 209 1.2E-37 T 13-10-2018 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 266 21.739 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 222 244 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 PIRSF PIRSF000193 3 267 8.7E-67 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 Gene3D G3DSA:1.10.3730.10 165 265 2.6E-30 T 13-10-2018 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 Gene3D G3DSA:3.40.50.720 1 164 2.4E-40 T 13-10-2018 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 263 2.5E-30 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 263 2.6E-68 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 SUPERFAMILY SSF48179 163 263 6.8E-26 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_1968 15b949590c288cd7e8388172b2550ab8 267 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 100 3.4E-17 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BMD_1968 15b949590c288cd7e8388172b2550ab8 267 SUPERFAMILY SSF51735 5 158 1.41E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 Pfam PF13361 UvrD-like helicase C-terminal domain 288 624 1.4E-72 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 Gene3D G3DSA:3.40.50.300 20 285 2.0E-109 T 13-10-2018 BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 SUPERFAMILY SSF52540 11 654 3.22E-186 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 Pfam PF00580 UvrD/REP helicase N-terminal domain 20 283 2.3E-84 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 Gene3D G3DSA:1.10.10.160 124 198 2.0E-109 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 Gene3D G3DSA:1.10.486.10 394 559 3.2E-130 T 13-10-2018 BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 Gene3D G3DSA:3.40.50.300 291 645 3.2E-130 T 13-10-2018 BMD_0288 720cba20cae6b92a5d6345f12d5676aa 749 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 16 746 0.0 T 13-10-2018 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 BMD_3421 ab0a053a557376643a227703731deb03 256 Pfam PF00731 AIR carboxylase 116 242 2.5E-16 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BMD_3421 ab0a053a557376643a227703731deb03 256 SUPERFAMILY SSF52255 114 246 1.83E-31 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BMD_3421 ab0a053a557376643a227703731deb03 256 SMART SM01001 114 246 3.2E-39 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BMD_3421 ab0a053a557376643a227703731deb03 256 Gene3D G3DSA:3.40.50.7700 115 255 1.1E-36 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BMD_1645 a325d03fa81129ed5cf6d8828b13548e 232 SUPERFAMILY SSF88713 38 230 9.39E-53 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_1645 a325d03fa81129ed5cf6d8828b13548e 232 Gene3D G3DSA:3.20.20.370 23 232 1.0E-56 T 13-10-2018 BMD_1645 a325d03fa81129ed5cf6d8828b13548e 232 Pfam PF01522 Polysaccharide deacetylase 38 139 1.7E-24 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_1139 06da6f60f67200928c6ce19110208ce2 248 SUPERFAMILY SSF52266 84 246 2.29E-11 T 13-10-2018 BMD_1139 06da6f60f67200928c6ce19110208ce2 248 Gene3D G3DSA:3.40.50.1110 68 246 2.7E-11 T 13-10-2018 IPR036514 SGNH hydrolase superfamily BMD_5093 b5b50e53d02b47692bb7cd97e629cd35 496 SUPERFAMILY SSF53720 7 489 2.75E-172 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_5093 b5b50e53d02b47692bb7cd97e629cd35 496 Pfam PF00171 Aldehyde dehydrogenase family 18 483 1.5E-178 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_5093 b5b50e53d02b47692bb7cd97e629cd35 496 Gene3D G3DSA:3.40.309.10 260 453 3.2E-191 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_5093 b5b50e53d02b47692bb7cd97e629cd35 496 Gene3D G3DSA:3.40.605.10 17 478 3.2E-191 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_5093 b5b50e53d02b47692bb7cd97e629cd35 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_5093 b5b50e53d02b47692bb7cd97e629cd35 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_5093 b5b50e53d02b47692bb7cd97e629cd35 496 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 14 481 3.3E-214 T 13-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 BMD_1904 816a0166122009a0ee81470ea224116e 258 Pfam PF07907 YibE/F-like protein 4 243 8.7E-75 T 13-10-2018 IPR012507 YibE/F-like BMD_1904 816a0166122009a0ee81470ea224116e 258 PIRSF PIRSF031503 1 258 8.5E-94 T 13-10-2018 IPR014564 Uncharacterised conserved protein UCP031503, transmembrane BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 SMART SM00345 1 53 1.4E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 Gene3D G3DSA:1.10.10.10 1 57 7.1E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 Gene3D G3DSA:1.20.120.530 65 209 5.6E-31 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 Pfam PF00392 Bacterial regulatory proteins, gntR family 1 53 9.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 SMART SM00895 77 202 3.5E-23 T 13-10-2018 IPR011711 GntR, C-terminal BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 SUPERFAMILY SSF48008 73 207 1.33E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 43 1.3E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 13 27 1.3E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 Pfam PF07729 FCD domain 77 201 3.2E-24 T 13-10-2018 IPR011711 GntR, C-terminal BMD_3508 e4ee359dceeba35996ccd5fb563a6864 211 SUPERFAMILY SSF46785 1 57 6.12E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4113 2ce5edac0be5bf5924fa2d4519425ec3 430 Gene3D G3DSA:3.30.830.10 241 429 6.3E-46 T 13-10-2018 BMD_4113 2ce5edac0be5bf5924fa2d4519425ec3 430 Pfam PF05193 Peptidase M16 inactive domain 185 364 2.2E-20 T 13-10-2018 IPR007863 Peptidase M16, C-terminal BMD_4113 2ce5edac0be5bf5924fa2d4519425ec3 430 Pfam PF00675 Insulinase (Peptidase family M16) 66 177 3.2E-17 T 13-10-2018 IPR011765 Peptidase M16, N-terminal BMD_4113 2ce5edac0be5bf5924fa2d4519425ec3 430 Gene3D G3DSA:3.30.830.10 10 240 1.5E-61 T 13-10-2018 BMD_4113 2ce5edac0be5bf5924fa2d4519425ec3 430 SUPERFAMILY SSF63411 17 222 1.03E-42 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BMD_4113 2ce5edac0be5bf5924fa2d4519425ec3 430 SUPERFAMILY SSF63411 259 428 1.48E-20 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 Pfam PF06723 MreB/Mbl protein 4 328 6.2E-150 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 3 328 8.9E-136 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 Gene3D G3DSA:3.90.640.10 178 251 2.2E-125 T 13-10-2018 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 SUPERFAMILY SSF53067 4 140 8.2E-39 T 13-10-2018 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 Gene3D G3DSA:3.30.420.40 146 309 2.2E-125 T 13-10-2018 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 179 199 4.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 41 59 4.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 61 84 4.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 292 318 4.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 124 143 4.1E-57 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 Gene3D G3DSA:3.30.420.40 6 319 2.2E-125 T 13-10-2018 BMD_5126 c399c6bc1b3c3d3269045e306a852279 333 SUPERFAMILY SSF53067 142 325 5.25E-49 T 13-10-2018 BMD_2686 a33d30c4bf8845323c3e2a8db78a09f9 192 Gene3D G3DSA:2.60.60.30 19 187 2.0E-70 T 13-10-2018 BMD_2686 a33d30c4bf8845323c3e2a8db78a09f9 192 Pfam PF02342 TerD domain 1 188 4.1E-85 T 13-10-2018 IPR003325 TerD domain BMD_4070 755eeac0edc53d4c94049e30979232c7 587 Gene3D G3DSA:3.40.50.300 326 586 8.0E-79 T 13-10-2018 BMD_4070 755eeac0edc53d4c94049e30979232c7 587 SMART SM00382 362 554 1.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4070 755eeac0edc53d4c94049e30979232c7 587 SUPERFAMILY SSF52540 331 573 3.99E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4070 755eeac0edc53d4c94049e30979232c7 587 ProSitePatterns PS00211 ABC transporters family signature. 474 488 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4070 755eeac0edc53d4c94049e30979232c7 587 Pfam PF00664 ABC transporter transmembrane region 19 291 3.7E-43 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_4070 755eeac0edc53d4c94049e30979232c7 587 Pfam PF00005 ABC transporter 353 500 1.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4070 755eeac0edc53d4c94049e30979232c7 587 SUPERFAMILY SSF90123 5 322 3.27E-72 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_4070 755eeac0edc53d4c94049e30979232c7 587 Gene3D G3DSA:1.20.1560.10 1 319 9.5E-78 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 9.4E-41 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 Gene3D G3DSA:3.40.50.720 4 329 1.8E-159 T 13-10-2018 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 SUPERFAMILY SSF55347 152 314 5.66E-75 T 13-10-2018 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.0E-42 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 SMART SM00846 3 152 9.4E-99 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 Gene3D G3DSA:3.30.360.10 151 315 1.8E-159 T 13-10-2018 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 PIRSF PIRSF000149 1 334 5.3E-142 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 7.5E-140 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 1.1E-71 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5038 4f5d6149e1da48d6dc69e60503c1da69 335 SUPERFAMILY SSF51735 3 168 1.71E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4934 7e2aca9ff5e6e56017eae91c275cab38 386 Gene3D G3DSA:3.90.1150.10 29 377 7.2E-132 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4934 7e2aca9ff5e6e56017eae91c275cab38 386 Gene3D G3DSA:3.40.640.10 60 281 7.2E-132 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4934 7e2aca9ff5e6e56017eae91c275cab38 386 Pfam PF00155 Aminotransferase class I and II 29 378 1.1E-71 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_4934 7e2aca9ff5e6e56017eae91c275cab38 386 SUPERFAMILY SSF53383 5 384 9.74E-119 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4934 7e2aca9ff5e6e56017eae91c275cab38 386 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 231 244 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BMD_0858 0e368c044bc87632a3090ba2e5797a5a 257 SUPERFAMILY SSF53335 30 255 2.71E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0858 0e368c044bc87632a3090ba2e5797a5a 257 Pfam PF08241 Methyltransferase domain 46 141 3.7E-25 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BMD_0858 0e368c044bc87632a3090ba2e5797a5a 257 Gene3D G3DSA:3.40.50.150 27 257 1.6E-65 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 349 457 1.2E-36 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 Gene3D G3DSA:3.30.390.30 348 468 9.4E-44 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 4.3E-42 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 4.3E-42 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 4.3E-42 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 4.3E-42 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 4.3E-42 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 10 468 2.3E-176 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PIRSF PIRSF000350 3 458 8.2E-98 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 11 330 3.7E-74 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 SUPERFAMILY SSF51905 7 340 6.22E-67 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 44 54 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 410 425 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 152 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 366 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 43 58 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 3.6E-77 T 13-10-2018 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 Gene3D G3DSA:3.50.50.60 13 335 2.6E-125 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 SUPERFAMILY SSF55424 346 468 2.06E-40 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_1329 d18810d492229b152edb0a2f10dc51e7 470 Gene3D G3DSA:3.50.50.60 152 273 2.6E-125 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2382 22c8104a39075e28af00c33f9858d184 478 TIGRFAM TIGR02309 HpaB-1: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 4 478 5.1E-162 T 13-10-2018 IPR012687 4-HPA 3-monooxygenase large component, Deinococcus-type GO:0010124|GO:0016712|GO:0050660 KEGG: 00350+1.14.14.9|MetaCyc: PWY-7431 BMD_2382 22c8104a39075e28af00c33f9858d184 478 PIRSF PIRSF000331 1 478 4.5E-147 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH BMD_2382 22c8104a39075e28af00c33f9858d184 478 Gene3D G3DSA:1.20.140.10 274 478 1.3E-70 T 13-10-2018 BMD_2382 22c8104a39075e28af00c33f9858d184 478 Gene3D G3DSA:2.40.110.10 147 272 1.1E-41 T 13-10-2018 BMD_2382 22c8104a39075e28af00c33f9858d184 478 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 279 476 7.8E-56 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal BMD_2382 22c8104a39075e28af00c33f9858d184 478 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 6 270 1.0E-90 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal BMD_2382 22c8104a39075e28af00c33f9858d184 478 SUPERFAMILY SSF47203 262 477 6.28E-52 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_2382 22c8104a39075e28af00c33f9858d184 478 SUPERFAMILY SSF56645 4 272 2.75E-75 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_2382 22c8104a39075e28af00c33f9858d184 478 Gene3D G3DSA:1.10.3140.10 3 146 4.2E-46 T 13-10-2018 BMD_1593 236b81b7cebe8f2ae4827b62bd530646 157 Pfam PF04073 Aminoacyl-tRNA editing domain 24 142 2.4E-24 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BMD_1593 236b81b7cebe8f2ae4827b62bd530646 157 SUPERFAMILY SSF55826 4 152 1.44E-31 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BMD_1593 236b81b7cebe8f2ae4827b62bd530646 157 Gene3D G3DSA:3.90.960.10 1 156 1.4E-37 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 Pfam PF09383 NIL domain 266 337 1.3E-18 T 13-10-2018 IPR018449 NIL domain BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 Pfam PF00005 ABC transporter 21 169 5.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 SUPERFAMILY SSF55021 249 338 6.52E-20 T 13-10-2018 BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 SMART SM00382 30 226 4.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 SUPERFAMILY SSF52540 1 240 2.51E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 SMART SM00930 263 338 9.0E-23 T 13-10-2018 IPR018449 NIL domain BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 Gene3D G3DSA:3.30.70.260 233 339 3.9E-26 T 13-10-2018 BMD_1585 6ce4f589d5715535be9e93c5bf858fcd 360 Gene3D G3DSA:3.40.50.300 1 232 2.1E-74 T 13-10-2018 BMD_1983 e01d239f7c1b6f3a47c777a17b5e9c1c 381 PIRSF PIRSF026508 2 381 5.1E-114 T 13-10-2018 IPR008863 Toxic anion resistance BMD_1983 e01d239f7c1b6f3a47c777a17b5e9c1c 381 Pfam PF05816 Toxic anion resistance protein (TelA) 50 378 4.8E-122 T 13-10-2018 IPR008863 Toxic anion resistance BMD_1772 f539e47628d37d73abc2fb5a60c2218e 431 Pfam PF01979 Amidohydrolase family 76 416 2.8E-23 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_1772 f539e47628d37d73abc2fb5a60c2218e 431 TIGRFAM TIGR01224 hutI: imidazolonepropionase 36 416 5.1E-155 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1772 f539e47628d37d73abc2fb5a60c2218e 431 Hamap MF_00372 Imidazolonepropionase [hutI]. 4 417 43.918 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1772 f539e47628d37d73abc2fb5a60c2218e 431 SUPERFAMILY SSF51338 29 421 4.17E-20 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1772 f539e47628d37d73abc2fb5a60c2218e 431 SUPERFAMILY SSF51556 79 378 1.47E-87 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_1772 f539e47628d37d73abc2fb5a60c2218e 431 Gene3D G3DSA:2.30.40.10 10 415 8.4E-176 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1772 f539e47628d37d73abc2fb5a60c2218e 431 Gene3D G3DSA:3.20.20.140 80 377 8.4E-176 T 13-10-2018 BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 SUPERFAMILY SSF55811 46 181 8.39E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 Gene3D G3DSA:1.10.10.10 183 251 1.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 Gene3D G3DSA:3.90.79.10 17 182 9.2E-52 T 13-10-2018 BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 Pfam PF00293 NUDIX domain 47 165 8.9E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 ProSitePatterns PS00893 Nudix box signature. 73 94 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 PRINTS PR00502 NUDIX hydrolase family signature 68 82 7.5E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 PRINTS PR00502 NUDIX hydrolase family signature 82 97 7.5E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_2159 d66befa7bbb95f957c10d176efc653d3 258 SUPERFAMILY SSF46785 180 247 3.54E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2188 714b8d7970189eb5cb96aece18a6e8f7 185 Pfam PF10101 Predicted membrane protein (DUF2339) 30 180 9.3E-12 T 13-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane BMD_3116 17c43bfd56606b52b30752f13fb0966f 264 SUPERFAMILY SSF110710 1 262 1.73E-96 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like BMD_3116 17c43bfd56606b52b30752f13fb0966f 264 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 33 261 4.2E-81 T 13-10-2018 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 BMD_3422 7d41d7043c3b0dad06a93579f38346cb 269 SUPERFAMILY SSF52402 15 221 9.03E-38 T 13-10-2018 BMD_3422 7d41d7043c3b0dad06a93579f38346cb 269 PIRSF PIRSF006661 1 269 4.3E-103 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 BMD_3422 7d41d7043c3b0dad06a93579f38346cb 269 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 8 259 6.0E-80 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 BMD_3422 7d41d7043c3b0dad06a93579f38346cb 269 Pfam PF02540 NAD synthase 15 81 2.3E-9 T 13-10-2018 IPR022310 NAD/GMP synthase BMD_3422 7d41d7043c3b0dad06a93579f38346cb 269 Gene3D G3DSA:3.40.50.620 5 168 5.1E-29 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_5024 4cd6ccd8f22893d361ab5f95ee8fcf3a 265 PIRSF PIRSF015626 1 264 1.1E-76 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BMD_5024 4cd6ccd8f22893d361ab5f95ee8fcf3a 265 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 2 262 31.354 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BMD_5024 4cd6ccd8f22893d361ab5f95ee8fcf3a 265 SUPERFAMILY SSF53927 5 261 6.02E-74 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BMD_5024 4cd6ccd8f22893d361ab5f95ee8fcf3a 265 Pfam PF02634 FdhD/NarQ family 26 261 1.4E-75 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BMD_5024 4cd6ccd8f22893d361ab5f95ee8fcf3a 265 Gene3D G3DSA:3.40.140.10 116 265 1.1E-47 T 13-10-2018 BMD_5024 4cd6ccd8f22893d361ab5f95ee8fcf3a 265 Gene3D G3DSA:3.10.20.10 28 110 1.0E-13 T 13-10-2018 BMD_5024 4cd6ccd8f22893d361ab5f95ee8fcf3a 265 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 21 262 1.4E-72 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 TIGRFAM TIGR00165 S18: ribosomal protein bS18 10 77 9.2E-38 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 Pfam PF01084 Ribosomal protein S18 23 73 1.7E-28 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 6 78 22.634 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 ProSitePatterns PS00057 Ribosomal protein S18 signature. 26 49 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 Gene3D G3DSA:4.10.640.10 3 78 8.7E-32 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 PRINTS PR00974 Ribosomal protein S18 family signature 43 50 1.9E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 PRINTS PR00974 Ribosomal protein S18 family signature 51 65 1.9E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 PRINTS PR00974 Ribosomal protein S18 family signature 65 75 1.9E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 PRINTS PR00974 Ribosomal protein S18 family signature 33 43 1.9E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 25 77 3.0E-23 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5255 8c7464ed27d6c2b2a21001ca375ccd44 79 SUPERFAMILY SSF46911 6 77 2.09E-31 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_3138 636940c6f30195d2c48ba65e24b0c0ff 39 Pfam PF13215 Protein of unknown function (DUF4023) 1 38 8.0E-22 T 13-10-2018 IPR025097 Protein of unknown function DUF4023 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 Pfam PF09285 Elongation factor P, C-terminal 129 184 2.4E-26 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 Hamap MF_00141 Elongation factor P [efp]. 1 185 50.396 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 SMART SM00841 129 184 1.5E-33 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 60 3.6E-28 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 SUPERFAMILY SSF50249 128 185 5.31E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 SUPERFAMILY SSF50249 65 129 1.41E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 SMART SM01185 67 121 1.9E-25 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 Gene3D G3DSA:2.30.30.30 1 62 4.1E-31 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 4.2E-22 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 PIRSF PIRSF005901 1 185 2.1E-71 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 Gene3D G3DSA:2.40.50.140 64 127 2.8E-26 T 13-10-2018 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 SUPERFAMILY SSF50104 1 62 6.62E-22 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 TIGRFAM TIGR00038 efp: translation elongation factor P 2 185 1.0E-80 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site BMD_4458 dcb3a8e5b14236c38d71dddb79e1cea3 185 Gene3D G3DSA:2.40.50.140 128 185 9.8E-27 T 13-10-2018 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Pfam PF00571 CBS domain 86 134 9.2E-6 T 13-10-2018 IPR000644 CBS domain BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Pfam PF00571 CBS domain 33 76 1.1E-4 T 13-10-2018 IPR000644 CBS domain BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SMART SM00116 93 137 17.0 T 13-10-2018 IPR000644 CBS domain BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SMART SM00116 29 77 1.8E-4 T 13-10-2018 IPR000644 CBS domain BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SUPERFAMILY SSF55785 152 245 7.5E-15 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 585 604 8.5E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 568 585 8.5E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Gene3D G3DSA:3.30.450.20 153 249 1.2E-18 T 13-10-2018 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Pfam PF02954 Bacterial regulatory protein, Fis family 566 602 7.8E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SUPERFAMILY SSF52540 288 533 5.45E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 313 326 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SUPERFAMILY SSF46689 503 604 2.15E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 376 391 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SMART SM00382 309 457 2.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Gene3D G3DSA:3.40.50.300 276 461 1.5E-69 T 13-10-2018 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Gene3D G3DSA:1.10.10.60 536 604 5.2E-15 T 13-10-2018 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Pfam PF00989 PAS fold 153 204 1.8E-9 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Gene3D G3DSA:3.10.580.10 17 138 1.3E-21 T 13-10-2018 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Pfam PF00158 Sigma-54 interaction domain 289 456 3.4E-71 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SMART SM00091 151 217 7.1E-9 T 13-10-2018 IPR000014 PAS domain BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 SUPERFAMILY SSF54631 21 134 2.78E-21 T 13-10-2018 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 503 512 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 Gene3D G3DSA:1.10.8.60 462 535 1.9E-21 T 13-10-2018 BMD_1653 31aa5fecd006a5cd35fb9bb9c1024866 604 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 202 1.5E-9 T 13-10-2018 IPR000014 PAS domain BMD_4305 a4963c598f01215282e72b09ec7fa663 271 SUPERFAMILY SSF51366 3 237 3.86E-77 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_4305 a4963c598f01215282e72b09ec7fa663 271 Pfam PF00290 Tryptophan synthase alpha chain 9 253 3.4E-89 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_4305 a4963c598f01215282e72b09ec7fa663 271 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 5 261 2.3E-87 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_4305 a4963c598f01215282e72b09ec7fa663 271 Gene3D G3DSA:3.20.20.70 1 265 3.1E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4305 a4963c598f01215282e72b09ec7fa663 271 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 44 57 - T 13-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_4305 a4963c598f01215282e72b09ec7fa663 271 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 10 265 34.837 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BMD_3714 6595163f715dbb4dc817db8ef866e411 264 Gene3D G3DSA:3.40.50.720 1 264 6.9E-77 T 13-10-2018 BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 4.0E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.0E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.0E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 5.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 5.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 5.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 5.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 5.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3714 6595163f715dbb4dc817db8ef866e411 264 SUPERFAMILY SSF51735 6 259 5.23E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3714 6595163f715dbb4dc817db8ef866e411 264 Pfam PF00106 short chain dehydrogenase 8 193 4.9E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3830 4b8609e1661fea42e4185dcec4a913c2 523 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 93 438 3.9E-75 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_3830 4b8609e1661fea42e4185dcec4a913c2 523 PIRSF PIRSF002741 10 520 2.8E-88 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_3830 4b8609e1661fea42e4185dcec4a913c2 523 Gene3D G3DSA:3.10.105.10 291 492 1.3E-29 T 13-10-2018 BMD_3830 4b8609e1661fea42e4185dcec4a913c2 523 Gene3D G3DSA:3.40.190.10 23 290 1.5E-71 T 13-10-2018 BMD_3830 4b8609e1661fea42e4185dcec4a913c2 523 SUPERFAMILY SSF53850 47 517 6.15E-110 T 13-10-2018 BMD_3830 4b8609e1661fea42e4185dcec4a913c2 523 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 98 120 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site BMD_1778 d538500fc93df5d041e8958eb572e58a 480 Gene3D G3DSA:1.20.200.10 147 414 7.5E-115 T 13-10-2018 BMD_1778 d538500fc93df5d041e8958eb572e58a 480 Gene3D G3DSA:1.10.275.10 13 146 2.5E-58 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal BMD_1778 d538500fc93df5d041e8958eb572e58a 480 PRINTS PR00149 Fumarate lyase superfamily signature 187 205 9.8E-33 T 13-10-2018 IPR000362 Fumarate lyase family BMD_1778 d538500fc93df5d041e8958eb572e58a 480 PRINTS PR00149 Fumarate lyase superfamily signature 142 160 9.8E-33 T 13-10-2018 IPR000362 Fumarate lyase family BMD_1778 d538500fc93df5d041e8958eb572e58a 480 PRINTS PR00149 Fumarate lyase superfamily signature 278 305 9.8E-33 T 13-10-2018 IPR000362 Fumarate lyase family BMD_1778 d538500fc93df5d041e8958eb572e58a 480 PRINTS PR00149 Fumarate lyase superfamily signature 324 340 9.8E-33 T 13-10-2018 IPR000362 Fumarate lyase family BMD_1778 d538500fc93df5d041e8958eb572e58a 480 Pfam PF00206 Lyase 20 349 1.3E-110 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal BMD_1778 d538500fc93df5d041e8958eb572e58a 480 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 13 473 9.4E-234 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 BMD_1778 d538500fc93df5d041e8958eb572e58a 480 ProSitePatterns PS00163 Fumarate lyases signature. 324 333 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BMD_1778 d538500fc93df5d041e8958eb572e58a 480 Pfam PF10415 Fumarase C C-terminus 415 468 4.1E-19 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_1778 d538500fc93df5d041e8958eb572e58a 480 Gene3D G3DSA:1.10.40.30 415 466 2.8E-21 T 13-10-2018 BMD_1778 d538500fc93df5d041e8958eb572e58a 480 SUPERFAMILY SSF48557 12 467 2.36E-147 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_1778 d538500fc93df5d041e8958eb572e58a 480 PRINTS PR00145 Argininosuccinate lyase family signature 182 202 3.3E-6 T 13-10-2018 BMD_1778 d538500fc93df5d041e8958eb572e58a 480 PRINTS PR00145 Argininosuccinate lyase family signature 324 340 3.3E-6 T 13-10-2018 BMD_1479 1641f60b22b35bd21c9c61e9da954cba 73 Pfam PF10676 Spore germination protein gerPA/gerPF 1 72 6.9E-23 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF BMD_4088 da928ee724d16c64456cf9a615fccce5 421 SUPERFAMILY SSF53383 50 399 1.58E-44 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4088 da928ee724d16c64456cf9a615fccce5 421 Gene3D G3DSA:3.40.640.10 59 272 5.7E-184 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4088 da928ee724d16c64456cf9a615fccce5 421 Pfam PF06838 Methionine gamma-lyase 14 415 1.6E-211 T 13-10-2018 IPR009651 Putative methionine gamma-lyase BMD_4088 da928ee724d16c64456cf9a615fccce5 421 Gene3D G3DSA:3.90.1150.60 18 412 5.7E-184 T 13-10-2018 BMD_3610 e1f747605d0374255692f3ce287c8a2c 221 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 2 55 4.8E-13 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BMD_3610 e1f747605d0374255692f3ce287c8a2c 221 Gene3D G3DSA:3.40.50.10860 2 68 6.8E-68 T 13-10-2018 BMD_3610 e1f747605d0374255692f3ce287c8a2c 221 SUPERFAMILY SSF51735 68 221 8.53E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3610 e1f747605d0374255692f3ce287c8a2c 221 SUPERFAMILY SSF53223 2 67 6.91E-19 T 13-10-2018 BMD_3610 e1f747605d0374255692f3ce287c8a2c 221 Gene3D G3DSA:3.40.50.720 69 221 6.8E-68 T 13-10-2018 BMD_3035 1607760c1d2c7569ea2ae12fa4ffcb56 416 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 209 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BMD_3035 1607760c1d2c7569ea2ae12fa4ffcb56 416 SUPERFAMILY SSF53383 10 387 4.62E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3035 1607760c1d2c7569ea2ae12fa4ffcb56 416 Gene3D G3DSA:3.40.640.10 23 286 3.8E-146 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3035 1607760c1d2c7569ea2ae12fa4ffcb56 416 PIRSF PIRSF000524 5 413 2.1E-137 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 BMD_3035 1607760c1d2c7569ea2ae12fa4ffcb56 416 Gene3D G3DSA:3.90.1150.10 9 384 3.8E-146 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3035 1607760c1d2c7569ea2ae12fa4ffcb56 416 Pfam PF00266 Aminotransferase class-V 38 359 3.6E-35 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 SUPERFAMILY SSF53686 13 366 6.94E-101 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 52 65 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 SUPERFAMILY SSF55021 340 414 6.87E-11 T 13-10-2018 BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 Gene3D G3DSA:3.40.1020.10 329 423 4.4E-10 T 13-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 TIGRFAM TIGR02079 THD1: threonine dehydratase 16 423 7.8E-195 T 13-10-2018 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 28 317 2.6E-74 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 330 419 7.8E-27 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 Gene3D G3DSA:3.40.50.1100 25 328 1.5E-117 T 13-10-2018 BMD_4043 7b70fe18a9d9fa42f83489a887631ea9 423 Gene3D G3DSA:3.40.50.1100 60 159 1.5E-117 T 13-10-2018 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 TIGRFAM TIGR00062 L27: ribosomal protein bL27 10 90 2.4E-40 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 Pfam PF01016 Ribosomal L27 protein 11 90 4.4E-34 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 Gene3D G3DSA:2.40.50.100 29 94 5.2E-26 T 13-10-2018 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 ProSitePatterns PS00831 Ribosomal protein L27 signature. 43 57 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 37 78 7.0E-16 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 PRINTS PR00063 Ribosomal protein L27 signature 13 37 1.3E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 PRINTS PR00063 Ribosomal protein L27 signature 38 62 1.3E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 PRINTS PR00063 Ribosomal protein L27 signature 63 87 1.3E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 10 93 27.04 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4645 46a41cdabb7ba21066898e376c897c6d 97 SUPERFAMILY SSF110324 11 92 1.19E-31 T 13-10-2018 BMD_4104 35dea06fad0462502f05b0e3ff53f975 265 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 265 9.0E-118 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like BMD_4104 35dea06fad0462502f05b0e3ff53f975 265 Pfam PF13277 YmdB-like protein 4 255 1.9E-113 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like BMD_4104 35dea06fad0462502f05b0e3ff53f975 265 Gene3D G3DSA:3.60.21.10 1 265 6.8E-119 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_4104 35dea06fad0462502f05b0e3ff53f975 265 PIRSF PIRSF004789 1 264 3.9E-108 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like BMD_4104 35dea06fad0462502f05b0e3ff53f975 265 SUPERFAMILY SSF56300 1 257 4.11E-90 T 13-10-2018 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 243 285 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 258 273 6.7E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 289 6.7E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 SMART SM00342 206 289 3.6E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 SUPERFAMILY SSF46689 189 240 5.82E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 Gene3D G3DSA:2.60.120.10 8 104 1.5E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 SUPERFAMILY SSF51182 37 108 3.85E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 SUPERFAMILY SSF46689 242 292 3.27E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 Gene3D G3DSA:1.10.10.60 240 294 2.6E-16 T 13-10-2018 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 Pfam PF12833 Helix-turn-helix domain 213 290 1.0E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 Gene3D G3DSA:1.10.10.60 187 239 2.9E-12 T 13-10-2018 BMD_3292 c066f1473a43328e805bb31b6aea9f7d 299 Pfam PF02311 AraC-like ligand binding domain 40 104 4.8E-10 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BMD_4081 5d8b11a5acff63cf4974a772316afa4f 325 SUPERFAMILY SSF53448 3 221 1.46E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4081 5d8b11a5acff63cf4974a772316afa4f 325 Gene3D G3DSA:3.90.550.10 1 201 1.0E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4081 5d8b11a5acff63cf4974a772316afa4f 325 Pfam PF00535 Glycosyl transferase family 2 6 166 7.7E-35 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 SUPERFAMILY SSF56281 498 754 7.99E-53 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 SMART SM00849 506 716 1.4E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 Pfam PF03772 Competence protein 208 467 2.5E-62 T 13-10-2018 IPR004477 ComEC/Rec2-related protein BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 Gene3D G3DSA:3.60.15.10 495 760 9.5E-69 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 Pfam PF00753 Metallo-beta-lactamase superfamily 503 715 3.6E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 Pfam PF13567 Domain of unknown function (DUF4131) 26 165 3.6E-19 T 13-10-2018 IPR025405 Domain of unknown function DUF4131 BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 77 745 1.3E-128 T 13-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 BMD_4561 dc8ebef508c910ebe891809dd9d80d9c 763 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 230 399 1.5E-34 T 13-10-2018 IPR004477 ComEC/Rec2-related protein BMD_1719 7039c8db90b64ec64e0c2e442c1b3343 253 Gene3D G3DSA:3.40.50.150 54 253 9.6E-22 T 13-10-2018 BMD_1719 7039c8db90b64ec64e0c2e442c1b3343 253 Pfam PF08241 Methyltransferase domain 67 161 4.5E-17 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BMD_1719 7039c8db90b64ec64e0c2e442c1b3343 253 SUPERFAMILY SSF53335 1 237 2.43E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4622 98b6048ee62bfd25767bf35c2e491ff2 536 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 378 518 1.9E-17 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain BMD_4622 98b6048ee62bfd25767bf35c2e491ff2 536 PIRSF PIRSF038958 20 535 1.2E-181 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type BMD_4622 98b6048ee62bfd25767bf35c2e491ff2 536 Pfam PF01943 Polysaccharide biosynthesis protein 24 325 5.0E-57 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BMD_4622 98b6048ee62bfd25767bf35c2e491ff2 536 TIGRFAM TIGR02900 spore_V_B: stage V sporulation protein B 24 511 3.6E-179 T 13-10-2018 IPR014249 Sporulation stage V protein B BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 SUPERFAMILY SSF53067 147 331 5.25E-50 T 13-10-2018 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 7 333 5.6E-161 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 Pfam PF06723 MreB/Mbl protein 7 332 6.4E-152 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 297 323 8.6E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 44 62 8.6E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 184 204 8.6E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 64 87 8.6E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 129 148 8.6E-62 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 Gene3D G3DSA:3.30.420.40 151 314 1.1E-131 T 13-10-2018 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 SUPERFAMILY SSF53067 8 144 1.55E-38 T 13-10-2018 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 Gene3D G3DSA:3.30.420.40 9 324 1.1E-131 T 13-10-2018 BMD_4655 f4ce800dbafdeabd08c7d4c94a506bfa 341 Gene3D G3DSA:3.90.640.10 183 256 1.1E-131 T 13-10-2018 BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 Pfam PF01595 Domain of unknown function DUF21 11 185 3.0E-49 T 13-10-2018 IPR002550 CNNM, transmembrane domain BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 Pfam PF03471 Transporter associated domain 337 411 9.9E-18 T 13-10-2018 IPR005170 Transporter-associated domain BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 SMART SM00116 273 321 13.0 T 13-10-2018 IPR000644 CBS domain BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 SMART SM00116 211 260 0.043 T 13-10-2018 IPR000644 CBS domain BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 Pfam PF00571 CBS domain 202 257 1.7E-5 T 13-10-2018 IPR000644 CBS domain BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 Pfam PF00571 CBS domain 269 321 2.2E-5 T 13-10-2018 IPR000644 CBS domain BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 SMART SM01091 336 414 7.1E-17 T 13-10-2018 IPR005170 Transporter-associated domain BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 SUPERFAMILY SSF56176 334 419 5.45E-18 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 SUPERFAMILY SSF54631 197 339 4.3E-33 T 13-10-2018 BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 Gene3D G3DSA:3.10.580.10 182 329 3.0E-51 T 13-10-2018 BMD_0560 1bccf2ae4298ab7f78bee20878d60d9e 421 Gene3D G3DSA:3.30.465.10 330 412 3.0E-19 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 1 235 5.5E-97 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 Pfam PF00557 Metallopeptidase family M24 1 227 1.6E-53 T 13-10-2018 IPR000994 Peptidase M24 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 PRINTS PR00599 Methionine aminopeptidase-1 signature 55 68 8.1E-23 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 PRINTS PR00599 Methionine aminopeptidase-1 signature 77 93 8.1E-23 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 PRINTS PR00599 Methionine aminopeptidase-1 signature 147 159 8.1E-23 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 PRINTS PR00599 Methionine aminopeptidase-1 signature 178 190 8.1E-23 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 Gene3D G3DSA:3.90.230.10 1 236 4.7E-101 T 13-10-2018 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 Hamap MF_01974 Methionine aminopeptidase [map]. 1 236 38.867 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 SUPERFAMILY SSF55920 1 234 1.22E-83 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like BMD_0156 ec29702fc95ddfe6f3397b21e398f16b 236 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 153 171 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_4015 57acbf95d1983cd17afedd230f0c33d8 256 Pfam PF07070 SpoOM protein 4 214 5.9E-75 T 13-10-2018 IPR009776 Sporulation stage 0, protein M BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 Gene3D G3DSA:3.40.50.720 222 385 3.4E-164 T 13-10-2018 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 Gene3D G3DSA:1.10.285.10 18 394 3.4E-164 T 13-10-2018 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 SUPERFAMILY SSF51735 215 459 5.18E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 Gene3D G3DSA:1.10.285.10 395 460 8.2E-11 T 13-10-2018 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 SUPERFAMILY SSF53223 18 209 2.53E-72 T 13-10-2018 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 Gene3D G3DSA:3.40.50.10860 67 202 3.4E-164 T 13-10-2018 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 PIRSF PIRSF000185 32 460 1.3E-122 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 215 458 7.2E-91 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 206 228 3.8E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 384 395 3.8E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 248 268 3.8E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 126 140 3.8E-30 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 69 197 1.2E-49 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_1700 e5115cbbbdff36f0cd8fcfb5e53dfb70 460 SMART SM00839 217 458 1.5E-92 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BMD_2389 8827ce265389d00ba57d9e07b21b589f 308 Pfam PF05901 Excalibur calcium-binding domain 272 306 1.4E-14 T 13-10-2018 IPR008613 Excalibur calcium-binding domain BMD_2389 8827ce265389d00ba57d9e07b21b589f 308 SMART SM00894 271 307 2.7E-18 T 13-10-2018 IPR008613 Excalibur calcium-binding domain BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 SMART SM00646 312 422 4.5E-34 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Gene3D G3DSA:2.30.30.40 32 88 2.4E-19 T 13-10-2018 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Pfam PF08239 Bacterial SH3 domain 111 162 2.2E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Pfam PF08239 Bacterial SH3 domain 182 230 7.7E-11 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Pfam PF08239 Bacterial SH3 domain 39 88 1.3E-16 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 SMART SM00287 173 234 6.6E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 SMART SM00287 30 91 2.4E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 SMART SM00287 103 166 3.4E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Gene3D G3DSA:2.30.30.40 95 166 9.5E-21 T 13-10-2018 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 254 422 8.3E-47 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Gene3D G3DSA:3.40.630.40 249 426 3.0E-57 T 13-10-2018 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 PIRSF PIRSF037846 12 181 3.3E-29 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 PIRSF PIRSF037846 162 426 7.0E-80 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 SUPERFAMILY SSF53187 252 425 2.01E-50 T 13-10-2018 BMD_3062 9f225495060adfe2d57dcb01bac3b1ec 429 Gene3D G3DSA:2.30.30.40 175 231 2.2E-10 T 13-10-2018 BMD_2353 0f929bf1d3d348cbcd6e132d56d493ea 433 SUPERFAMILY SSF53383 34 421 1.9E-63 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2353 0f929bf1d3d348cbcd6e132d56d493ea 433 Pfam PF00155 Aminotransferase class I and II 37 411 2.8E-33 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_2353 0f929bf1d3d348cbcd6e132d56d493ea 433 Gene3D G3DSA:3.40.640.10 4 425 1.5E-111 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3525 c1a4a9c1c87dec8a7c2035a8919016bb 166 Gene3D G3DSA:3.40.630.30 5 166 2.3E-36 T 13-10-2018 BMD_3525 c1a4a9c1c87dec8a7c2035a8919016bb 166 Pfam PF13673 Acetyltransferase (GNAT) domain 38 166 2.4E-14 T 13-10-2018 IPR000182 GNAT domain BMD_3525 c1a4a9c1c87dec8a7c2035a8919016bb 166 SUPERFAMILY SSF55729 7 150 4.22E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 Pfam PF00390 Malic enzyme, N-terminal domain 101 222 4.6E-27 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 ProSitePatterns PS00331 Malic enzymes signature. 230 246 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 PIRSF PIRSF000106 1 441 8.6E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 SUPERFAMILY SSF55021 7 75 2.06E-5 T 13-10-2018 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 Gene3D G3DSA:3.40.50.10380 71 231 3.0E-67 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 Pfam PF13291 ACT domain 8 75 2.6E-6 T 13-10-2018 IPR002912 ACT domain BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 SUPERFAMILY SSF53223 83 232 6.12E-51 T 13-10-2018 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 Gene3D G3DSA:3.40.50.720 232 441 2.2E-44 T 13-10-2018 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 250 322 2.5E-7 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 SMART SM00919 234 433 3.9E-49 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 SMART SM01274 89 222 5.6E-72 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_2037 ec1b6c156b73df60c7abea31a822a310 443 SUPERFAMILY SSF51735 234 436 1.71E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5146 4a4dcec004777b6117aea35fc61951c9 414 Gene3D G3DSA:3.40.640.10 34 284 2.5E-190 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_5146 4a4dcec004777b6117aea35fc61951c9 414 Pfam PF00464 Serine hydroxymethyltransferase 6 381 4.2E-181 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BMD_5146 4a4dcec004777b6117aea35fc61951c9 414 SUPERFAMILY SSF53383 4 412 2.72E-183 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_5146 4a4dcec004777b6117aea35fc61951c9 414 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 4 412 53.506 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BMD_5146 4a4dcec004777b6117aea35fc61951c9 414 PIRSF PIRSF000412 1 414 6.6E-171 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BMD_5146 4a4dcec004777b6117aea35fc61951c9 414 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 219 235 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BMD_5146 4a4dcec004777b6117aea35fc61951c9 414 Gene3D G3DSA:3.90.1150.10 7 392 2.5E-190 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 SMART SM00421 149 206 3.2E-27 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 SMART SM00448 4 120 4.8E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 SUPERFAMILY SSF46894 143 212 5.78E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 SUPERFAMILY SSF52172 3 121 1.27E-32 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 Pfam PF00072 Response regulator receiver domain 6 111 2.1E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 1.5E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 Gene3D G3DSA:3.40.50.12740 4 212 6.3E-67 T 13-10-2018 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.4E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.4E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_3258 908701a76e24e552c98704e56fe4ffdb 213 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.4E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_5120 e416789c400b4df86cc979eafa555306 348 Gene3D G3DSA:3.90.1720.10 230 348 2.9E-39 T 13-10-2018 BMD_5120 e416789c400b4df86cc979eafa555306 348 Pfam PF00877 NlpC/P60 family 243 344 2.7E-27 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_5120 e416789c400b4df86cc979eafa555306 348 Pfam PF01476 LysM domain 96 137 1.5E-12 T 13-10-2018 IPR018392 LysM domain BMD_5120 e416789c400b4df86cc979eafa555306 348 Pfam PF01476 LysM domain 163 204 4.8E-12 T 13-10-2018 IPR018392 LysM domain BMD_5120 e416789c400b4df86cc979eafa555306 348 Pfam PF01476 LysM domain 32 73 1.5E-14 T 13-10-2018 IPR018392 LysM domain BMD_5120 e416789c400b4df86cc979eafa555306 348 Gene3D G3DSA:3.10.350.10 20 89 4.8E-18 T 13-10-2018 IPR036779 LysM domain superfamily BMD_5120 e416789c400b4df86cc979eafa555306 348 SUPERFAMILY SSF54106 162 205 1.31E-10 T 13-10-2018 BMD_5120 e416789c400b4df86cc979eafa555306 348 Gene3D G3DSA:3.10.350.10 158 212 1.8E-18 T 13-10-2018 IPR036779 LysM domain superfamily BMD_5120 e416789c400b4df86cc979eafa555306 348 Gene3D G3DSA:3.10.350.10 91 145 2.0E-18 T 13-10-2018 IPR036779 LysM domain superfamily BMD_5120 e416789c400b4df86cc979eafa555306 348 SUPERFAMILY SSF54106 32 73 2.09E-10 T 13-10-2018 BMD_5120 e416789c400b4df86cc979eafa555306 348 SUPERFAMILY SSF54106 95 137 1.07E-11 T 13-10-2018 BMD_5120 e416789c400b4df86cc979eafa555306 348 SUPERFAMILY SSF54001 224 346 5.89E-39 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_5120 e416789c400b4df86cc979eafa555306 348 SMART SM00257 162 205 1.4E-15 T 13-10-2018 IPR018392 LysM domain BMD_5120 e416789c400b4df86cc979eafa555306 348 SMART SM00257 30 73 2.7E-16 T 13-10-2018 IPR018392 LysM domain BMD_5120 e416789c400b4df86cc979eafa555306 348 SMART SM00257 95 138 2.8E-16 T 13-10-2018 IPR018392 LysM domain BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 Gene3D G3DSA:1.20.59.30 245 331 7.0E-29 T 13-10-2018 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 383 428 1.5E-18 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 SUPERFAMILY SSF52402 8 238 9.43E-62 T 13-10-2018 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 21 208 1.2E-63 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 5 319 24.683 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 SUPERFAMILY SSF82829 217 323 2.09E-11 T 13-10-2018 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 Gene3D G3DSA:3.40.50.620 1 129 3.2E-41 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 Pfam PF11734 TilS substrate C-terminal domain 383 446 3.9E-14 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 Pfam PF01171 PP-loop family 21 204 1.7E-62 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 Gene3D G3DSA:1.10.10.1360 130 216 5.5E-31 T 13-10-2018 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 SUPERFAMILY SSF56037 334 456 2.54E-19 T 13-10-2018 BMD_0087 991fa5e987b5f65aaef90c8d210d3092 458 SMART SM00977 383 455 5.9E-24 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BMD_0253 3904412c24699208181079af2f77e913 342 SUPERFAMILY SSF53067 10 130 3.95E-32 T 13-10-2018 BMD_0253 3904412c24699208181079af2f77e913 342 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 138 150 1.8E-49 T 13-10-2018 IPR017861 Kae1/TsaD family BMD_0253 3904412c24699208181079af2f77e913 342 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 105 124 1.8E-49 T 13-10-2018 IPR017861 Kae1/TsaD family BMD_0253 3904412c24699208181079af2f77e913 342 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 161 182 1.8E-49 T 13-10-2018 IPR017861 Kae1/TsaD family BMD_0253 3904412c24699208181079af2f77e913 342 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 84 104 1.8E-49 T 13-10-2018 IPR017861 Kae1/TsaD family BMD_0253 3904412c24699208181079af2f77e913 342 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 12 25 1.8E-49 T 13-10-2018 IPR017861 Kae1/TsaD family BMD_0253 3904412c24699208181079af2f77e913 342 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 271 280 1.8E-49 T 13-10-2018 IPR017861 Kae1/TsaD family BMD_0253 3904412c24699208181079af2f77e913 342 Gene3D G3DSA:3.30.420.40 136 302 3.2E-123 T 13-10-2018 BMD_0253 3904412c24699208181079af2f77e913 342 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 9 340 65.118 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 BMD_0253 3904412c24699208181079af2f77e913 342 ProSitePatterns PS01016 Glycoprotease family signature. 104 124 - T 13-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 BMD_0253 3904412c24699208181079af2f77e913 342 Gene3D G3DSA:3.30.420.40 11 324 3.2E-123 T 13-10-2018 BMD_0253 3904412c24699208181079af2f77e913 342 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 11 322 4.0E-134 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 BMD_0253 3904412c24699208181079af2f77e913 342 SUPERFAMILY SSF53067 109 316 8.79E-44 T 13-10-2018 BMD_0253 3904412c24699208181079af2f77e913 342 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 12 315 1.0E-108 T 13-10-2018 IPR017861 Kae1/TsaD family BMD_0253 3904412c24699208181079af2f77e913 342 Pfam PF00814 Glycoprotease family 31 315 8.6E-107 T 13-10-2018 IPR000905 Gcp-like domain BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 11 490 2.6E-84 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 Gene3D G3DSA:1.20.1250.20 263 498 2.4E-21 T 13-10-2018 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 SUPERFAMILY SSF103473 6 498 2.88E-78 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 4.7E-8 T 13-10-2018 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 134 158 4.7E-8 T 13-10-2018 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 299 323 4.7E-8 T 13-10-2018 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 73 95 4.7E-8 T 13-10-2018 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 PRINTS PR01036 Tetracycline resistance protein TetB signature 355 375 4.7E-8 T 13-10-2018 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 Gene3D G3DSA:1.20.1720.10 11 219 1.4E-56 T 13-10-2018 BMD_2928 b8e2b53c70521fa7b7c17ba079b2511b 514 Pfam PF07690 Major Facilitator Superfamily 15 406 3.3E-57 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2334 b386ef81532e575611588d5bf4c2a43d 461 PIRSF PIRSF000521 11 398 3.4E-39 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_2334 b386ef81532e575611588d5bf4c2a43d 461 Gene3D G3DSA:3.40.640.10 53 333 1.5E-144 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_2334 b386ef81532e575611588d5bf4c2a43d 461 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 245 282 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_2334 b386ef81532e575611588d5bf4c2a43d 461 SUPERFAMILY SSF53383 18 444 1.02E-116 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2334 b386ef81532e575611588d5bf4c2a43d 461 Pfam PF00202 Aminotransferase class-III 19 443 5.0E-92 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_2334 b386ef81532e575611588d5bf4c2a43d 461 Gene3D G3DSA:3.90.1150.10 19 444 1.5E-144 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1773 d9c076486ff68ddb3cd31d8ded3a5c95 327 Gene3D G3DSA:3.40.800.10 26 325 2.3E-76 T 13-10-2018 BMD_1773 d9c076486ff68ddb3cd31d8ded3a5c95 327 Pfam PF00491 Arginase family 44 319 3.2E-57 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1773 d9c076486ff68ddb3cd31d8ded3a5c95 327 PRINTS PR00116 Arginase signature 131 146 3.1E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1773 d9c076486ff68ddb3cd31d8ded3a5c95 327 PRINTS PR00116 Arginase signature 247 276 3.1E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1773 d9c076486ff68ddb3cd31d8ded3a5c95 327 SUPERFAMILY SSF52768 22 324 1.22E-63 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_1773 d9c076486ff68ddb3cd31d8ded3a5c95 327 PIRSF PIRSF036979 23 327 3.1E-47 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1160 5698882b70fac69dfca0d497e68b3982 394 SUPERFAMILY SSF51556 62 360 2.81E-97 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_1160 5698882b70fac69dfca0d497e68b3982 394 Gene3D G3DSA:2.30.40.10 14 387 3.7E-146 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1160 5698882b70fac69dfca0d497e68b3982 394 Gene3D G3DSA:3.20.20.140 62 360 3.7E-146 T 13-10-2018 BMD_1160 5698882b70fac69dfca0d497e68b3982 394 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 6 386 4.7E-114 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 BMD_1160 5698882b70fac69dfca0d497e68b3982 394 PIRSF PIRSF038994 5 393 4.7E-133 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 BMD_1160 5698882b70fac69dfca0d497e68b3982 394 SUPERFAMILY SSF51338 6 392 2.68E-15 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1160 5698882b70fac69dfca0d497e68b3982 394 Pfam PF01979 Amidohydrolase family 59 387 7.9E-30 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 38 53 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 Gene3D G3DSA:1.10.3860.10 1 417 2.6E-134 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 Pfam PF00375 Sodium:dicarboxylate symporter family 8 402 2.3E-125 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 76 101 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 2 22 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 330 349 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 195 214 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 357 377 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 295 321 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 46 66 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 PRINTS PR00173 Glutamate-aspartate symporter signature 148 170 2.7E-44 T 13-10-2018 BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 298 321 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_0453 d5a97651ec99d2d76e3263680d2d832d 419 SUPERFAMILY SSF118215 8 404 8.63E-124 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_0992 d8ebe6c0797f7ff5ee742d0f18e05c1f 203 SUPERFAMILY SSF88659 136 197 9.35E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_0992 d8ebe6c0797f7ff5ee742d0f18e05c1f 203 Gene3D G3DSA:1.10.10.10 118 199 2.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0992 d8ebe6c0797f7ff5ee742d0f18e05c1f 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 61 195 5.2E-13 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_0992 d8ebe6c0797f7ff5ee742d0f18e05c1f 203 Pfam PF08281 Sigma-70, region 4 141 192 5.7E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 SUPERFAMILY SSF50249 2 125 7.54E-52 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 SUPERFAMILY SSF50104 126 273 1.75E-62 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 Gene3D G3DSA:4.10.950.10 197 276 1.0E-37 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 SMART SM01382 124 253 6.6E-96 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 SMART SM01383 42 118 4.3E-46 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 PIRSF PIRSF002158 3 276 4.1E-102 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 Gene3D G3DSA:2.30.30.30 118 196 6.4E-36 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 Gene3D G3DSA:2.40.50.140 1 113 1.7E-49 T 13-10-2018 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 5.4E-34 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 276 6.8E-142 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 275 50.467 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BMD_0137 54188f15a8161f02c2979b7f18b9a289 276 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 251 2.4E-58 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BMD_5103 848b7ac66b4a23d91824434d7516e1b4 165 SUPERFAMILY SSF53271 2 164 1.02E-22 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_5103 848b7ac66b4a23d91824434d7516e1b4 165 Gene3D G3DSA:3.40.50.2020 11 165 1.2E-16 T 13-10-2018 BMD_5103 848b7ac66b4a23d91824434d7516e1b4 165 Pfam PF00156 Phosphoribosyl transferase domain 78 163 1.5E-8 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 PRINTS PR00072 Malic enzyme signature 77 99 7.4E-9 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 PRINTS PR00072 Malic enzyme signature 156 172 7.4E-9 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 PRINTS PR00072 Malic enzyme signature 187 203 7.4E-9 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 SUPERFAMILY SSF53223 6 158 2.95E-56 T 13-10-2018 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 SMART SM01274 15 148 3.6E-85 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 ProSitePatterns PS00331 Malic enzymes signature. 156 172 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 Gene3D G3DSA:3.40.50.720 158 391 6.0E-86 T 13-10-2018 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 SUPERFAMILY SSF51735 160 401 4.14E-82 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 Pfam PF00390 Malic enzyme, N-terminal domain 16 148 4.7E-30 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 Gene3D G3DSA:3.40.50.10380 1 157 9.3E-76 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 Pfam PF03949 Malic enzyme, NAD binding domain 162 383 1.2E-23 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 PIRSF PIRSF000106 35 409 1.1E-83 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3115 301c157b35d523dc3d3c86a972b394d0 410 SMART SM00919 160 384 4.7E-131 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_1849 d1893d9a85633b05e5c5b3ff8ee9e628 174 SUPERFAMILY SSF109854 1 154 6.87E-26 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_1849 d1893d9a85633b05e5c5b3ff8ee9e628 174 Gene3D G3DSA:1.20.120.450 1 171 2.1E-44 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_1849 d1893d9a85633b05e5c5b3ff8ee9e628 174 Pfam PF12867 DinB superfamily 12 150 8.2E-11 T 13-10-2018 IPR024775 DinB-like domain BMD_2162 12504009abfe6dd0710a2d926f2bce49 226 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 29 225 5.7E-41 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BMD_2162 12504009abfe6dd0710a2d926f2bce49 226 SUPERFAMILY SSF52374 26 226 2.43E-38 T 13-10-2018 BMD_2162 12504009abfe6dd0710a2d926f2bce49 226 Gene3D G3DSA:3.40.50.620 21 226 1.5E-49 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_2162 12504009abfe6dd0710a2d926f2bce49 226 Pfam PF01467 Cytidylyltransferase-like 29 199 2.6E-20 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BMD_2162 12504009abfe6dd0710a2d926f2bce49 226 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 25 226 20.987 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 298 2.5E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 448 4.1E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 Gene3D G3DSA:1.10.287.130 181 301 2.0E-25 T 13-10-2018 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 SMART SM00304 177 231 7.5E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 8.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 8.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 447 8.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 428 8.6E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 Gene3D G3DSA:3.30.565.10 304 448 4.3E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 SUPERFAMILY SSF158472 178 228 2.22E-5 T 13-10-2018 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 SMART SM00387 341 448 3.9E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 SUPERFAMILY SSF47384 215 299 8.63E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 SUPERFAMILY SSF55874 289 448 1.44E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0319 5a36cf9f2a23f25b8d27d4708a343556 448 SMART SM00388 232 299 1.6E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 SMART SM00357 3 66 5.0E-33 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 PIRSF PIRSF002599 1 66 1.5E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 PRINTS PR00050 Cold shock protein signature 4 19 1.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 PRINTS PR00050 Cold shock protein signature 24 33 1.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 PRINTS PR00050 Cold shock protein signature 39 57 1.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 SUPERFAMILY SSF50249 1 64 2.67E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.6E-32 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 Gene3D G3DSA:2.40.50.140 1 66 2.9E-31 T 13-10-2018 BMD_2698 8479f6ed89ea5a955d953d6e95833883 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_1890 e93b3b8e83133b5340654e3ac87b43d0 65 SMART SM00914 25 61 6.4E-10 T 13-10-2018 IPR014957 IDEAL domain BMD_1890 e93b3b8e83133b5340654e3ac87b43d0 65 Pfam PF08858 IDEAL domain 25 61 1.6E-14 T 13-10-2018 IPR014957 IDEAL domain BMD_1890 e93b3b8e83133b5340654e3ac87b43d0 65 Gene3D G3DSA:4.10.810.10 11 65 1.0E-18 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_1463 2fba8b0a594dde8c27d7ae220a519dcd 335 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1463 2fba8b0a594dde8c27d7ae220a519dcd 335 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 229 318 2.1E-28 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_1463 2fba8b0a594dde8c27d7ae220a519dcd 335 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 298 2.7E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_1463 2fba8b0a594dde8c27d7ae220a519dcd 335 SUPERFAMILY SSF52540 6 251 2.06E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1463 2fba8b0a594dde8c27d7ae220a519dcd 335 Gene3D G3DSA:3.40.50.300 4 332 2.8E-103 T 13-10-2018 BMD_1463 2fba8b0a594dde8c27d7ae220a519dcd 335 SMART SM00382 36 229 1.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1463 2fba8b0a594dde8c27d7ae220a519dcd 335 Pfam PF00005 ABC transporter 28 179 9.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1226 be79e4c5d27578ff6c7bc40f38108448 237 Hamap MF_02104 Lactate utilization protein C [lutC]. 4 234 47.498 T 13-10-2018 IPR022823 Lactate utilization protein C BMD_1226 be79e4c5d27578ff6c7bc40f38108448 237 Pfam PF02589 LUD domain 53 234 3.6E-32 T 13-10-2018 IPR003741 LUD domain BMD_1226 be79e4c5d27578ff6c7bc40f38108448 237 SUPERFAMILY SSF100950 46 234 7.11E-41 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_1226 be79e4c5d27578ff6c7bc40f38108448 237 Gene3D G3DSA:3.40.50.10420 45 235 2.3E-38 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily BMD_2240 4d3a3632f25d061400c1de8b7ff4532e 212 Pfam PF02310 B12 binding domain 77 162 1.0E-12 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_2240 4d3a3632f25d061400c1de8b7ff4532e 212 SUPERFAMILY SSF52242 75 167 2.49E-14 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_2240 4d3a3632f25d061400c1de8b7ff4532e 212 Gene3D G3DSA:1.10.1240.10 1 67 1.2E-9 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_2240 4d3a3632f25d061400c1de8b7ff4532e 212 Pfam PF02607 B12 binding domain 2 64 4.1E-7 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_2240 4d3a3632f25d061400c1de8b7ff4532e 212 Gene3D G3DSA:3.40.50.280 72 198 4.1E-21 T 13-10-2018 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 SUPERFAMILY SSF51735 4 168 2.19E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4746 340a9729a6a100c99c767896cdaf2298 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 4.1E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 4.1E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 4.1E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 4.1E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 4.1E-40 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 Gene3D G3DSA:3.40.50.720 4 329 1.7E-152 T 13-10-2018 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 7.6E-134 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 SMART SM00846 3 152 5.3E-88 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 PIRSF PIRSF000149 1 335 2.9E-139 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 SUPERFAMILY SSF55347 152 314 1.52E-71 T 13-10-2018 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 2.7E-67 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 Gene3D G3DSA:3.30.360.10 151 315 1.7E-152 T 13-10-2018 BMD_4746 340a9729a6a100c99c767896cdaf2298 343 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 102 1.3E-38 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_1057 03370d2c893a9187f024850f684a8ab5 487 Gene3D G3DSA:1.20.1730.10 21 486 1.2E-33 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily BMD_1057 03370d2c893a9187f024850f684a8ab5 487 Pfam PF00474 Sodium:solute symporter family 35 428 1.9E-22 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BMD_3329 4003eda3d3ea9048f7ae78687a02f8e2 320 SUPERFAMILY SSF55031 115 226 3.79E-32 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_3329 4003eda3d3ea9048f7ae78687a02f8e2 320 Pfam PF07687 Peptidase dimerisation domain 116 210 2.7E-13 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_3329 4003eda3d3ea9048f7ae78687a02f8e2 320 Gene3D G3DSA:3.30.70.360 112 226 6.8E-123 T 13-10-2018 BMD_3329 4003eda3d3ea9048f7ae78687a02f8e2 320 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 1 306 4.7E-102 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_3329 4003eda3d3ea9048f7ae78687a02f8e2 320 Gene3D G3DSA:3.40.630.10 1 303 6.8E-123 T 13-10-2018 BMD_3329 4003eda3d3ea9048f7ae78687a02f8e2 320 Pfam PF01546 Peptidase family M20/M25/M40 3 315 5.0E-33 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_3329 4003eda3d3ea9048f7ae78687a02f8e2 320 SUPERFAMILY SSF53187 1 318 5.69E-62 T 13-10-2018 BMD_1959 209047079ac9975389b612689d1a9ce4 108 Gene3D G3DSA:1.10.1660.10 6 90 6.4E-26 T 13-10-2018 BMD_1959 209047079ac9975389b612689d1a9ce4 108 Pfam PF13411 MerR HTH family regulatory protein 14 80 1.1E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1959 209047079ac9975389b612689d1a9ce4 108 SUPERFAMILY SSF46955 14 100 9.16E-18 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_1959 209047079ac9975389b612689d1a9ce4 108 SMART SM00422 14 82 9.5E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3217 617fcd474e13dc56d857ca7e7f3e9c55 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_3217 617fcd474e13dc56d857ca7e7f3e9c55 252 SUPERFAMILY SSF52540 2 226 3.66E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3217 617fcd474e13dc56d857ca7e7f3e9c55 252 Pfam PF00005 ABC transporter 18 164 3.4E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3217 617fcd474e13dc56d857ca7e7f3e9c55 252 Gene3D G3DSA:3.40.50.300 1 247 2.8E-66 T 13-10-2018 BMD_3217 617fcd474e13dc56d857ca7e7f3e9c55 252 SMART SM00382 26 213 4.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 SMART SM00388 260 327 6.4E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 SMART SM00387 369 481 1.5E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 326 4.7E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 Gene3D G3DSA:1.10.287.130 204 327 5.6E-27 T 13-10-2018 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 421 1.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 435 1.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 479 1.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 460 1.2E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 SUPERFAMILY SSF47384 244 325 1.96E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 SUPERFAMILY SSF55874 318 480 3.8E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 481 4.3E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5234 5bcde5771b09465a728bc9844ebfd6c6 481 Gene3D G3DSA:3.30.565.10 353 481 1.2E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4410 76113978b816666bd030bc4167b54051 453 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 132 433 9.0E-36 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_4410 76113978b816666bd030bc4167b54051 453 PRINTS PR00419 Adrenodoxin reductase family signature 198 208 1.0E-17 T 13-10-2018 BMD_4410 76113978b816666bd030bc4167b54051 453 PRINTS PR00419 Adrenodoxin reductase family signature 133 155 1.0E-17 T 13-10-2018 BMD_4410 76113978b816666bd030bc4167b54051 453 PRINTS PR00419 Adrenodoxin reductase family signature 156 169 1.0E-17 T 13-10-2018 BMD_4410 76113978b816666bd030bc4167b54051 453 PRINTS PR00419 Adrenodoxin reductase family signature 266 280 1.0E-17 T 13-10-2018 BMD_4410 76113978b816666bd030bc4167b54051 453 Gene3D G3DSA:1.10.1060.10 1 128 1.5E-42 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_4410 76113978b816666bd030bc4167b54051 453 SUPERFAMILY SSF51971 130 377 2.94E-63 T 13-10-2018 BMD_4410 76113978b816666bd030bc4167b54051 453 SUPERFAMILY SSF46548 10 142 1.52E-32 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_4410 76113978b816666bd030bc4167b54051 453 Gene3D G3DSA:3.50.50.60 129 232 1.9E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4410 76113978b816666bd030bc4167b54051 453 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 12 120 6.0E-40 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 BMD_4410 76113978b816666bd030bc4167b54051 453 Gene3D G3DSA:3.50.50.60 233 376 6.3E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 251 1.4E-64 T 13-10-2018 BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.1E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.1E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 4.1E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 4.1E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 4.1E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 4.1E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 Gene3D G3DSA:3.40.50.720 1 261 9.3E-88 T 13-10-2018 BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.9E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0838 8dad2ff709d09d694e970822d0d7ac7a 261 SUPERFAMILY SSF51735 6 252 7.09E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4434 a0017c885aae70a143228d24fc450864 443 SUPERFAMILY SSF103473 10 438 4.05E-41 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4434 a0017c885aae70a143228d24fc450864 443 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 18 213 1.3E-57 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 BMD_4434 a0017c885aae70a143228d24fc450864 443 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 224 442 2.6E-48 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 BMD_4434 a0017c885aae70a143228d24fc450864 443 Gene3D G3DSA:1.20.1250.20 222 442 1.1E-51 T 13-10-2018 BMD_4434 a0017c885aae70a143228d24fc450864 443 Gene3D G3DSA:1.20.1250.20 12 221 5.5E-67 T 13-10-2018 BMD_4434 a0017c885aae70a143228d24fc450864 443 Pfam PF00854 POT family 229 409 3.5E-36 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 BMD_4434 a0017c885aae70a143228d24fc450864 443 Pfam PF00854 POT family 96 199 5.2E-25 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 BMD_2465 d092d53c45e7a0430590ae37080a59ea 331 SUPERFAMILY SSF50891 193 307 2.84E-10 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_2465 d092d53c45e7a0430590ae37080a59ea 331 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 324 6.1E-98 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_2465 d092d53c45e7a0430590ae37080a59ea 331 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 300 9.5E-96 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_2465 d092d53c45e7a0430590ae37080a59ea 331 Gene3D G3DSA:2.40.100.10 190 328 7.7E-51 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_2465 d092d53c45e7a0430590ae37080a59ea 331 SMART SM00797 24 317 2.6E-136 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 SUPERFAMILY SSF53383 6 400 6.33E-126 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 TIGRFAM TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase 10 399 1.3E-165 T 13-10-2018 IPR010164 Ornithine aminotransferase GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 PIRSF PIRSF000521 1 163 8.7E-9 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 PIRSF PIRSF000521 179 401 8.3E-34 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 Hamap MF_01689 Ornithine aminotransferase [rocD]. 8 400 66.258 T 13-10-2018 IPR034757 Ornithine aminotransferase, bacterial type GO:0004587 KEGG: 00330+2.6.1.13|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|MetaCyc: PWY-6922 BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 Gene3D G3DSA:3.90.1150.10 27 389 8.1E-153 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 Pfam PF00202 Aminotransferase class-III 20 398 3.3E-134 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 227 264 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0663 4a9ffe418d7f5643a9c7fdcce63d633a 401 Gene3D G3DSA:3.40.640.10 62 310 8.1E-153 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1357 d004dd51bce0c3401840db287d66a9b4 312 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 27 282 4.6E-64 T 13-10-2018 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related BMD_1357 d004dd51bce0c3401840db287d66a9b4 312 TIGRFAM TIGR02737 caa3_CtaG: cytochrome c oxidase assembly factor CtaG 4 284 1.7E-127 T 13-10-2018 IPR014108 Cytochrome c oxidase caa3 type assembly factor CtaG BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 SUPERFAMILY SSF53187 9 420 1.53E-59 T 13-10-2018 BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 Gene3D G3DSA:3.40.630.10 9 191 1.8E-41 T 13-10-2018 BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 SUPERFAMILY SSF55031 215 307 5.41E-8 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 Gene3D G3DSA:3.30.70.360 192 323 7.6E-27 T 13-10-2018 BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 20 411 1.2E-114 T 13-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 Gene3D G3DSA:3.40.630.10 324 425 6.8E-13 T 13-10-2018 BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 Pfam PF01546 Peptidase family M20/M25/M40 86 417 2.2E-31 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_0884 746d7c5533dece069ee83c7c76aadfde 425 Pfam PF07687 Peptidase dimerisation domain 188 309 2.5E-23 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_0881 18b62e76d476ad80226a27f322abe644 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 4 78 1.0E-22 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BMD_0881 18b62e76d476ad80226a27f322abe644 284 SUPERFAMILY SSF53697 94 279 1.28E-43 T 13-10-2018 BMD_0881 18b62e76d476ad80226a27f322abe644 284 Gene3D G3DSA:1.10.10.10 1 83 3.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0881 18b62e76d476ad80226a27f322abe644 284 Pfam PF01380 SIS domain 127 256 5.2E-27 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0881 18b62e76d476ad80226a27f322abe644 284 Gene3D G3DSA:3.40.50.10490 94 282 7.2E-51 T 13-10-2018 BMD_0881 18b62e76d476ad80226a27f322abe644 284 SUPERFAMILY SSF46689 6 79 9.5E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3693 a911e19d8507349814d192c4852abbd9 392 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 381 1.3E-139 T 13-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 BMD_3693 a911e19d8507349814d192c4852abbd9 392 Pfam PF00155 Aminotransferase class I and II 41 380 9.0E-62 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_3693 a911e19d8507349814d192c4852abbd9 392 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 236 245 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 BMD_3693 a911e19d8507349814d192c4852abbd9 392 Gene3D G3DSA:3.40.640.10 55 289 2.1E-135 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3693 a911e19d8507349814d192c4852abbd9 392 SUPERFAMILY SSF53383 19 389 7.98E-103 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3693 a911e19d8507349814d192c4852abbd9 392 Gene3D G3DSA:3.90.1150.10 35 378 2.1E-135 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 SUPERFAMILY SSF69189 304 398 3.92E-12 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 35 287 1.9E-78 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 312 421 9.0E-12 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 Gene3D G3DSA:3.40.710.10 29 312 1.6E-90 T 13-10-2018 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 SMART SM00936 312 421 1.2E-10 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 124 141 3.1E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 67 78 3.1E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 151 164 3.1E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 Gene3D G3DSA:2.60.410.10 313 421 4.1E-15 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_0014 565a8babfcf8e859d342bd29b4577e9c 451 SUPERFAMILY SSF56601 11 312 9.02E-77 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 SMART SM00865 207 324 1.1E-55 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 SMART SM00864 13 205 9.0E-120 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 Pfam PF12327 FtsZ family, C-terminal domain 222 315 3.2E-33 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 371 39.843 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 PRINTS PR00423 Cell division protein FtsZ signature 189 211 9.1E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 PRINTS PR00423 Cell division protein FtsZ signature 212 233 9.1E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 PRINTS PR00423 Cell division protein FtsZ signature 126 147 9.1E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 PRINTS PR00423 Cell division protein FtsZ signature 98 118 9.1E-53 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 Gene3D G3DSA:3.30.1330.20 221 326 7.4E-43 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 SUPERFAMILY SSF52490 12 208 5.89E-74 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 SUPERFAMILY SSF55307 204 318 2.29E-44 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 9 327 4.3E-142 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 Gene3D G3DSA:3.40.50.1440 4 220 1.2E-85 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 3.5E-46 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_4260 45f30835f99aa0b7a31d202ffc516e38 385 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BMD_1359 aa15c54842819554b0c59ab83d68584b 139 Gene3D G3DSA:3.10.580.10 1 123 2.2E-38 T 13-10-2018 BMD_1359 aa15c54842819554b0c59ab83d68584b 139 SUPERFAMILY SSF54631 2 120 4.17E-33 T 13-10-2018 BMD_1359 aa15c54842819554b0c59ab83d68584b 139 SMART SM00116 75 122 1.2E-13 T 13-10-2018 IPR000644 CBS domain BMD_1359 aa15c54842819554b0c59ab83d68584b 139 SMART SM00116 11 58 2.6E-7 T 13-10-2018 IPR000644 CBS domain BMD_1359 aa15c54842819554b0c59ab83d68584b 139 Pfam PF00571 CBS domain 68 117 1.1E-14 T 13-10-2018 IPR000644 CBS domain BMD_1359 aa15c54842819554b0c59ab83d68584b 139 Pfam PF00571 CBS domain 4 54 3.8E-9 T 13-10-2018 IPR000644 CBS domain BMD_5032 9ad0378c8acb93cff7b9eabe47cdab7f 246 Pfam PF12146 Serine aminopeptidase, S33 16 229 4.2E-18 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_5032 9ad0378c8acb93cff7b9eabe47cdab7f 246 Gene3D G3DSA:3.40.50.1820 1 246 8.1E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_5032 9ad0378c8acb93cff7b9eabe47cdab7f 246 SUPERFAMILY SSF53474 12 245 1.25E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_5032 9ad0378c8acb93cff7b9eabe47cdab7f 246 PIRSF PIRSF017388 1 246 1.4E-96 T 13-10-2018 IPR012354 Esterase/lipase GO:0052689 BMD_3950 1a3edff21c596c833f44f03351785d46 279 SUPERFAMILY SSF55729 1 257 1.58E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3950 1a3edff21c596c833f44f03351785d46 279 Pfam PF13673 Acetyltransferase (GNAT) domain 43 117 2.5E-8 T 13-10-2018 IPR000182 GNAT domain BMD_3950 1a3edff21c596c833f44f03351785d46 279 Gene3D G3DSA:3.40.630.90 144 279 4.2E-12 T 13-10-2018 BMD_3950 1a3edff21c596c833f44f03351785d46 279 Gene3D G3DSA:3.40.630.30 1 128 7.4E-14 T 13-10-2018 BMD_5104 b697d1d8b9ccc9386675d5b72b05e76d 496 Pfam PF04851 Type III restriction enzyme, res subunit 153 300 2.7E-13 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BMD_5104 b697d1d8b9ccc9386675d5b72b05e76d 496 SUPERFAMILY SSF52540 165 468 3.34E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5104 b697d1d8b9ccc9386675d5b72b05e76d 496 SMART SM00487 149 331 2.5E-16 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_5104 b697d1d8b9ccc9386675d5b72b05e76d 496 Pfam PF00271 Helicase conserved C-terminal domain 356 455 2.6E-10 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_5104 b697d1d8b9ccc9386675d5b72b05e76d 496 SMART SM00490 375 456 3.8E-10 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_5104 b697d1d8b9ccc9386675d5b72b05e76d 496 Gene3D G3DSA:3.40.50.300 335 470 3.7E-24 T 13-10-2018 BMD_5104 b697d1d8b9ccc9386675d5b72b05e76d 496 Gene3D G3DSA:3.40.50.300 152 318 5.2E-18 T 13-10-2018 BMD_0772 e8b0e3c747447ec5763cc3cef1fdf2fa 109 PIRSF PIRSF000699 1 104 3.3E-38 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BMD_0772 e8b0e3c747447ec5763cc3cef1fdf2fa 109 SUPERFAMILY SSF46973 1 99 1.96E-36 T 13-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 BMD_0772 e8b0e3c747447ec5763cc3cef1fdf2fa 109 Gene3D G3DSA:1.20.58.280 1 105 6.1E-40 T 13-10-2018 BMD_0772 e8b0e3c747447ec5763cc3cef1fdf2fa 109 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 7 99 1.2E-37 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BMD_2253 d2b66dee16c98282b41993217ed7ae80 67 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 5 59 2.8E-17 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_2253 d2b66dee16c98282b41993217ed7ae80 67 Gene3D G3DSA:1.10.8.910 6 65 3.2E-23 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_1751 e5f6fe6c10f6b3134a6a7db4c19945f7 366 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 5 363 3.2E-73 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_1751 e5f6fe6c10f6b3134a6a7db4c19945f7 366 Pfam PF03845 Spore germination protein 5 325 7.8E-88 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_4220 e99f0c31def7c3755883759d87ffb660 218 SUPERFAMILY SSF51366 1 213 1.26E-78 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_4220 e99f0c31def7c3755883759d87ffb660 218 PIRSF PIRSF001461 1 218 6.3E-100 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BMD_4220 e99f0c31def7c3755883759d87ffb660 218 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BMD_4220 e99f0c31def7c3755883759d87ffb660 218 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 200 1.4E-89 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BMD_4220 e99f0c31def7c3755883759d87ffb660 218 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 3 213 1.0E-94 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BMD_4220 e99f0c31def7c3755883759d87ffb660 218 Gene3D G3DSA:3.20.20.70 2 218 4.4E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4220 e99f0c31def7c3755883759d87ffb660 218 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 133 155 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BMD_3036 0967fe948f62d81011602759c2778118 413 Gene3D G3DSA:3.40.630.10 25 404 1.0E-127 T 13-10-2018 BMD_3036 0967fe948f62d81011602759c2778118 413 SUPERFAMILY SSF55031 218 331 6.8E-26 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_3036 0967fe948f62d81011602759c2778118 413 PIRSF PIRSF001235 9 413 4.2E-127 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 BMD_3036 0967fe948f62d81011602759c2778118 413 Pfam PF07687 Peptidase dimerisation domain 218 316 5.1E-7 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_3036 0967fe948f62d81011602759c2778118 413 SUPERFAMILY SSF53187 13 412 1.53E-72 T 13-10-2018 BMD_3036 0967fe948f62d81011602759c2778118 413 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 13 411 2.0E-129 T 13-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 BMD_3036 0967fe948f62d81011602759c2778118 413 Gene3D G3DSA:3.30.70.360 218 330 1.0E-127 T 13-10-2018 BMD_3036 0967fe948f62d81011602759c2778118 413 Pfam PF01546 Peptidase family M20/M25/M40 83 409 4.6E-26 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_1525 de7cbd935072d6d673095181616840ad 293 Gene3D G3DSA:3.40.190.10 38 292 1.2E-92 T 13-10-2018 BMD_1525 de7cbd935072d6d673095181616840ad 293 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 36 282 5.5E-65 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 BMD_1525 de7cbd935072d6d673095181616840ad 293 SUPERFAMILY SSF53850 34 293 3.71E-76 T 13-10-2018 BMD_1525 de7cbd935072d6d673095181616840ad 293 Gene3D G3DSA:3.40.190.100 118 228 1.2E-92 T 13-10-2018 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SUPERFAMILY SSF54211 9 144 4.71E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SUPERFAMILY SSF55666 145 236 5.76E-31 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SMART SM00322 553 617 4.3E-11 T 13-10-2018 IPR004087 K Homology domain GO:0003676 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SUPERFAMILY SSF55666 451 550 1.83E-29 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Pfam PF01138 3' exoribonuclease family, domain 1 15 144 2.2E-20 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Pfam PF01138 3' exoribonuclease family, domain 1 324 457 1.8E-19 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SMART SM00316 621 691 4.8E-24 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 PIRSF PIRSF005499 2 708 9.3E-302 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Gene3D G3DSA:3.30.230.70 236 550 1.4E-120 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Pfam PF00013 KH domain 557 615 6.9E-9 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 694 31.201 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Gene3D G3DSA:2.40.50.140 623 694 1.5E-26 T 13-10-2018 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 321 1.8E-14 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SUPERFAMILY SSF54791 556 641 1.48E-23 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SUPERFAMILY SSF50249 620 697 2.36E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Pfam PF00575 S1 RNA binding domain 620 691 4.0E-18 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 SUPERFAMILY SSF54211 293 489 5.57E-50 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 692 0.0 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Gene3D G3DSA:3.30.230.70 1 230 1.7E-83 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 7.8E-16 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Pfam PF03725 3' exoribonuclease family, domain 2 460 530 4.8E-8 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BMD_4132 2877a1f23e6492a415be5785307d3ec0 708 Gene3D G3DSA:3.30.1370.10 551 622 5.1E-20 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BMD_2677 2695914bf2909c721e3fdf9df1399752 145 Pfam PF01047 MarR family 32 87 2.1E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2677 2695914bf2909c721e3fdf9df1399752 145 Gene3D G3DSA:1.10.10.10 4 142 2.3E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2677 2695914bf2909c721e3fdf9df1399752 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 2.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2677 2695914bf2909c721e3fdf9df1399752 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 2.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2677 2695914bf2909c721e3fdf9df1399752 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 2.1E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2677 2695914bf2909c721e3fdf9df1399752 145 SUPERFAMILY SSF46785 18 140 1.54E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2677 2695914bf2909c721e3fdf9df1399752 145 SMART SM00347 22 123 3.0E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 SUPERFAMILY SSF51735 3 177 2.91E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4324 9c85282df88265ece6befc96db8e33b3 343 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 179 319 5.8E-55 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 4 158 5.1E-56 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 172 196 2.5E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 197 221 2.5E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 6 23 2.5E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 56 83 2.5E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 237 254 2.5E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 131 151 2.5E-46 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 PIRSF PIRSF000114 1 331 5.0E-115 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 Gene3D G3DSA:3.40.50.720 1 182 3.5E-70 T 13-10-2018 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 SUPERFAMILY SSF48179 179 331 9.52E-60 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 2 321 38.97 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 Gene3D G3DSA:1.10.1040.10 183 326 1.5E-53 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_4324 9c85282df88265ece6befc96db8e33b3 343 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 187 208 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BMD_0481 379fba958b9c5da2e8842e4878001b73 178 Pfam PF08239 Bacterial SH3 domain 115 172 4.0E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0481 379fba958b9c5da2e8842e4878001b73 178 Pfam PF08239 Bacterial SH3 domain 53 103 1.3E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0481 379fba958b9c5da2e8842e4878001b73 178 Gene3D G3DSA:2.30.30.40 45 105 3.8E-13 T 13-10-2018 BMD_0481 379fba958b9c5da2e8842e4878001b73 178 Gene3D G3DSA:2.30.30.40 106 173 1.5E-17 T 13-10-2018 BMD_0481 379fba958b9c5da2e8842e4878001b73 178 SMART SM00287 44 107 2.3E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0481 379fba958b9c5da2e8842e4878001b73 178 SMART SM00287 108 175 1.2E-6 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_1274 d4cd83c804cf301150debc9db1354b9e 612 Gene3D G3DSA:3.20.20.220 310 600 3.8E-52 T 13-10-2018 BMD_1274 d4cd83c804cf301150debc9db1354b9e 612 Pfam PF02219 Methylenetetrahydrofolate reductase 316 573 1.6E-26 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BMD_1274 d4cd83c804cf301150debc9db1354b9e 612 SUPERFAMILY SSF82282 2 359 1.05E-101 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BMD_1274 d4cd83c804cf301150debc9db1354b9e 612 SUPERFAMILY SSF51730 316 600 2.55E-68 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like BMD_1274 d4cd83c804cf301150debc9db1354b9e 612 Pfam PF02574 Homocysteine S-methyltransferase 12 280 6.7E-55 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 BMD_1274 d4cd83c804cf301150debc9db1354b9e 612 Gene3D G3DSA:3.20.20.330 2 293 1.7E-85 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BMD_2810 4f595854e55970c43eaf9c632906735c 197 Pfam PF07690 Major Facilitator Superfamily 14 182 7.3E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2810 4f595854e55970c43eaf9c632906735c 197 SUPERFAMILY SSF103473 1 190 3.01E-25 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2810 4f595854e55970c43eaf9c632906735c 197 Gene3D G3DSA:1.20.1250.20 9 197 4.6E-20 T 13-10-2018 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 325 35.562 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 SUPERFAMILY SSF75620 2 321 2.35E-125 T 13-10-2018 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 322 3.5E-159 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 SMART SM00937 33 147 1.9E-63 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 Pfam PF03462 PCRF domain 2 172 3.2E-67 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 Gene3D G3DSA:3.30.160.20 179 265 4.8E-95 T 13-10-2018 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 Gene3D G3DSA:3.30.70.1660 80 310 4.8E-95 T 13-10-2018 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 196 212 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BMD_5155 bbc6f0b529d06d477fefd81c728fcdc9 325 Pfam PF00472 RF-1 domain 180 289 2.9E-39 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BMD_4524 a84854ab1baabd27634d5ca0c8bcf7c7 373 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 7 369 2.1E-97 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 BMD_4524 a84854ab1baabd27634d5ca0c8bcf7c7 373 Gene3D G3DSA:3.40.1390.30 7 125 7.2E-41 T 13-10-2018 BMD_4524 a84854ab1baabd27634d5ca0c8bcf7c7 373 PIRSF PIRSF037489 5 373 3.8E-155 T 13-10-2018 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria BMD_4524 a84854ab1baabd27634d5ca0c8bcf7c7 373 SUPERFAMILY SSF102705 8 372 6.67E-131 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily BMD_4524 a84854ab1baabd27634d5ca0c8bcf7c7 373 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 9 351 5.6E-81 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 BMD_4524 a84854ab1baabd27634d5ca0c8bcf7c7 373 Gene3D G3DSA:3.30.70.120 134 242 4.7E-42 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_4619 ed520b28da028575920bfc60ed47d694 780 Pfam PF02272 DHHA1 domain 305 439 4.0E-21 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BMD_4619 ed520b28da028575920bfc60ed47d694 780 Pfam PF10141 Single-strand DNA-specific exonuclease, C terminal domain 568 770 5.7E-61 T 13-10-2018 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal BMD_4619 ed520b28da028575920bfc60ed47d694 780 Gene3D G3DSA:3.90.1640.30 57 318 1.2E-95 T 13-10-2018 BMD_4619 ed520b28da028575920bfc60ed47d694 780 SUPERFAMILY SSF64182 57 452 1.31E-121 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily BMD_4619 ed520b28da028575920bfc60ed47d694 780 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 28 562 5.2E-182 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 BMD_4619 ed520b28da028575920bfc60ed47d694 780 Gene3D G3DSA:3.10.310.30 319 444 3.2E-34 T 13-10-2018 BMD_4619 ed520b28da028575920bfc60ed47d694 780 Pfam PF01368 DHH family 83 225 2.7E-10 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 1 508 43.172 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 498 6.0E-39 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 Gene3D G3DSA:3.20.20.70 1 275 5.4E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 Pfam PF00682 HMGL-like 3 272 4.2E-93 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 3 496 1.9E-229 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 11 27 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 Gene3D G3DSA:3.30.160.270 392 499 2.7E-10 T 13-10-2018 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 Gene3D G3DSA:1.10.238.260 279 391 4.1E-40 T 13-10-2018 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 SMART SM00917 368 499 4.1E-34 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 SUPERFAMILY SSF51569 2 290 2.51E-95 T 13-10-2018 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 198 211 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BMD_4683 2df364a59d2231cf974b6c9b6b1f24ea 511 SUPERFAMILY SSF110921 390 498 4.45E-21 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BMD_1524 036cc3fff420c145a34c33e086889bb7 287 SUPERFAMILY SSF161098 90 273 7.72E-40 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1524 036cc3fff420c145a34c33e086889bb7 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 269 1.3E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1524 036cc3fff420c145a34c33e086889bb7 287 Gene3D G3DSA:1.10.3720.10 86 275 2.7E-35 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 SMART SM00279 181 216 6.1E-14 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 Gene3D G3DSA:3.40.50.1010 5 285 7.4E-71 T 13-10-2018 BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 SMART SM00475 1 269 2.4E-65 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 SUPERFAMILY SSF47807 179 264 5.53E-24 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 177 1.0E-37 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 Gene3D G3DSA:1.10.150.20 182 257 7.4E-71 T 13-10-2018 BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 179 261 2.7E-26 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 BMD_1965 14fb85d5e79a0c1f13a20bd08cbaa310 295 SUPERFAMILY SSF88723 3 177 5.64E-37 T 13-10-2018 IPR029060 PIN-like domain superfamily BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Pfam PF03717 Penicillin-binding Protein dimerisation domain 60 223 8.1E-22 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 SMART SM00740 607 666 3.3E-5 T 13-10-2018 IPR005543 PASTA domain BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 SMART SM00740 667 723 0.77 T 13-10-2018 IPR005543 PASTA domain BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Pfam PF03793 PASTA domain 612 664 1.0E-4 T 13-10-2018 IPR005543 PASTA domain BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Pfam PF03793 PASTA domain 669 721 1.1E-4 T 13-10-2018 IPR005543 PASTA domain BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 SUPERFAMILY SSF56601 195 597 6.66E-90 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 SUPERFAMILY SSF56519 56 244 6.67E-41 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 SUPERFAMILY SSF54184 668 721 1.57E-9 T 13-10-2018 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Gene3D G3DSA:2.20.70.70 57 230 1.6E-52 T 13-10-2018 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Gene3D G3DSA:3.30.70.2110 81 167 1.6E-52 T 13-10-2018 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Gene3D G3DSA:3.90.1310.10 62 211 1.6E-52 T 13-10-2018 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 SUPERFAMILY SSF54184 609 665 4.58E-10 T 13-10-2018 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Pfam PF00905 Penicillin binding protein transpeptidase domain 271 582 2.1E-79 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Gene3D G3DSA:3.40.710.10 303 498 3.1E-96 T 13-10-2018 BMD_4269 6cab9fa27e569a255ed7f5c90942bee2 752 Gene3D G3DSA:3.30.450.330 246 586 3.1E-96 T 13-10-2018 BMD_0561 dfe12400161bac522c92a0a4a20c1130 72 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 29 38 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_0561 dfe12400161bac522c92a0a4a20c1130 72 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 14 68 6.0E-21 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_0561 dfe12400161bac522c92a0a4a20c1130 72 Gene3D G3DSA:1.10.8.910 14 72 4.5E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_0561 dfe12400161bac522c92a0a4a20c1130 72 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 47 61 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_3462 e52802c15c406734a255c7dc83092145 395 Gene3D G3DSA:1.20.1250.20 8 386 1.1E-58 T 13-10-2018 BMD_3462 e52802c15c406734a255c7dc83092145 395 PRINTS PR01035 Tetracycline resistance protein signature 104 125 4.5E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3462 e52802c15c406734a255c7dc83092145 395 PRINTS PR01035 Tetracycline resistance protein signature 163 183 4.5E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3462 e52802c15c406734a255c7dc83092145 395 PRINTS PR01035 Tetracycline resistance protein signature 45 64 4.5E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3462 e52802c15c406734a255c7dc83092145 395 Pfam PF07690 Major Facilitator Superfamily 15 239 1.8E-29 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3462 e52802c15c406734a255c7dc83092145 395 SUPERFAMILY SSF103473 12 386 4.84E-55 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 415 430 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 350 371 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 272 286 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 3.3E-66 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 462 1.0E-36 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PIRSF PIRSF000350 1 469 4.3E-83 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 2.2E-36 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 2.2E-36 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 287 2.2E-36 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.2E-36 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 2.2E-36 T 13-10-2018 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 473 1.6E-173 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 6.9E-61 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 Gene3D G3DSA:3.50.50.60 163 285 3.8E-110 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 Gene3D G3DSA:3.30.390.30 353 473 7.8E-45 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 SUPERFAMILY SSF55424 350 472 7.73E-40 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 Gene3D G3DSA:3.50.50.60 5 341 3.8E-110 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4426 4c5944fe4ad3a9d75c158e58a6844872 473 SUPERFAMILY SSF51905 3 344 1.02E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 Gene3D G3DSA:3.40.50.620 2 194 3.0E-56 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 PIRSF PIRSF000089 1 323 2.6E-113 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 Pfam PF01012 Electron transfer flavoprotein domain 5 179 1.7E-44 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 SMART SM00893 5 195 1.3E-44 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 SUPERFAMILY SSF52402 4 191 6.77E-50 T 13-10-2018 BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 262 288 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 Gene3D G3DSA:3.40.50.1220 195 326 2.1E-56 T 13-10-2018 BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 SUPERFAMILY SSF52467 198 317 7.27E-48 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_4716 73f758383d16af7cce1cc659d3e0e037 326 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 198 281 1.5E-34 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 Pfam PF00989 PAS fold 213 268 3.2E-6 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 Gene3D G3DSA:1.10.8.60 507 580 7.8E-18 T 13-10-2018 BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 SUPERFAMILY SSF55785 200 269 1.19E-7 T 13-10-2018 IPR035965 PAS domain superfamily BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 Pfam PF08461 Ribonuclease R winged-helix domain 616 669 1.2E-7 T 13-10-2018 IPR013668 Ribonuclease R winged-helix domain BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 359 372 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 SUPERFAMILY SSF52540 334 573 1.28E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 422 437 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 Pfam PF00158 Sigma-54 interaction domain 335 502 2.8E-65 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 SMART SM00382 355 503 2.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 Gene3D G3DSA:1.10.10.10 589 680 1.3E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 Gene3D G3DSA:3.40.50.300 322 506 3.5E-63 T 13-10-2018 BMD_1605 bd862a1017a64447d6d01a3894c7d7fc 681 Gene3D G3DSA:3.30.450.20 215 311 7.8E-12 T 13-10-2018 BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 23 442 2.4E-192 T 13-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 Pfam PF00202 Aminotransferase class-III 36 441 1.7E-125 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 Gene3D G3DSA:3.40.640.10 72 339 3.4E-165 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 Gene3D G3DSA:3.90.1150.10 19 437 3.4E-165 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 SUPERFAMILY SSF53383 33 442 1.99E-131 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 PIRSF PIRSF000521 2 144 3.6E-8 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 PIRSF PIRSF000521 137 444 1.7E-35 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4063 6606dda6f72b4f79ab6c6000072a1636 451 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_2967 8ec2cf33dbae571b6ef2394ddd84a639 215 Gene3D G3DSA:3.40.109.10 19 215 6.3E-91 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_2967 8ec2cf33dbae571b6ef2394ddd84a639 215 Pfam PF00881 Nitroreductase family 25 193 5.5E-19 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_2967 8ec2cf33dbae571b6ef2394ddd84a639 215 SUPERFAMILY SSF55469 20 214 7.07E-73 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_2356 c52d00ce1121b86db473fff73ab77702 152 Gene3D G3DSA:2.40.10.420 119 152 1.5E-11 T 13-10-2018 BMD_2356 c52d00ce1121b86db473fff73ab77702 152 Pfam PF07486 Cell Wall Hydrolase 53 150 5.5E-28 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_2356 c52d00ce1121b86db473fff73ab77702 152 Gene3D G3DSA:1.10.10.2520 37 116 3.8E-32 T 13-10-2018 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 SUPERFAMILY SSF53720 10 518 5.63E-154 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 TIGRFAM TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase 12 519 2.3E-257 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 Gene3D G3DSA:3.40.605.10 17 515 1.2E-188 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 Pfam PF00171 Aldehyde dehydrogenase family 56 517 3.5E-158 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 320 331 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 292 299 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 Hamap MF_00733 1-pyrroline-5-carboxylate dehydrogenase [rocA]. 8 522 67.891 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 BMD_3813 d8269082f7c5b32ec7e06085c14478c7 522 Gene3D G3DSA:3.40.309.10 297 487 1.2E-188 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_4002 9147ed8be3fe32190597628d82ae2dfc 459 SUPERFAMILY SSF55604 6 80 2.88E-19 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_4002 9147ed8be3fe32190597628d82ae2dfc 459 Pfam PF00367 phosphotransferase system, EIIB 9 41 5.7E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_4002 9147ed8be3fe32190597628d82ae2dfc 459 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 112 1.6E-15 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BMD_4002 9147ed8be3fe32190597628d82ae2dfc 459 Pfam PF02378 Phosphotransferase system, EIIC 111 397 1.3E-51 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_4002 9147ed8be3fe32190597628d82ae2dfc 459 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 3 453 9.6E-193 T 13-10-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 BMD_4002 9147ed8be3fe32190597628d82ae2dfc 459 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_4002 9147ed8be3fe32190597628d82ae2dfc 459 Gene3D G3DSA:3.30.1360.60 1 77 3.2E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_0808 c6b067b5cf14ffc214fb923af1acfc2e 199 PIRSF PIRSF019307 32 199 3.4E-60 T 13-10-2018 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type BMD_0808 c6b067b5cf14ffc214fb923af1acfc2e 199 Pfam PF07883 Cupin domain 87 138 2.0E-7 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_0808 c6b067b5cf14ffc214fb923af1acfc2e 199 SUPERFAMILY SSF51182 42 156 6.16E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_0808 c6b067b5cf14ffc214fb923af1acfc2e 199 Gene3D G3DSA:2.60.120.10 76 162 2.9E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 SUPERFAMILY SSF52540 394 691 7.97E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 SUPERFAMILY SSF46785 715 780 1.27E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 Gene3D G3DSA:1.10.10.10 718 781 1.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 Pfam PF01580 FtsK/SpoIIIE family 421 619 5.3E-66 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 SMART SM00382 456 640 1.5E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 Gene3D G3DSA:3.40.50.300 418 705 6.0E-113 T 13-10-2018 BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 SMART SM00843 714 779 7.8E-42 T 13-10-2018 IPR018541 FtsK gamma domain BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 Gene3D G3DSA:3.30.980.40 313 416 2.3E-38 T 13-10-2018 BMD_4120 b46bf0fae1f4c1eb48a46c118a686aa1 785 Pfam PF09397 Ftsk gamma domain 717 776 7.9E-31 T 13-10-2018 IPR018541 FtsK gamma domain BMD_1679 197ea382f36c0159e94c88d44c89a85d 112 Pfam PF00893 Small Multidrug Resistance protein 3 93 1.7E-16 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BMD_1679 197ea382f36c0159e94c88d44c89a85d 112 SUPERFAMILY SSF103481 5 105 7.32E-15 T 13-10-2018 BMD_1679 197ea382f36c0159e94c88d44c89a85d 112 Gene3D G3DSA:1.10.3730.20 2 108 2.6E-23 T 13-10-2018 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 448 5.1E-84 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 Gene3D G3DSA:3.30.2130.10 291 454 8.7E-52 T 13-10-2018 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 SUPERFAMILY SSF53633 1 289 4.19E-65 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 Gene3D G3DSA:1.20.120.1320 39 135 1.8E-74 T 13-10-2018 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 Gene3D G3DSA:3.40.1160.10 3 287 1.8E-74 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 PIRSF PIRSF000726 1 455 2.9E-82 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 SUPERFAMILY SSF55021 372 450 2.5E-21 T 13-10-2018 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 Pfam PF00696 Amino acid kinase family 2 276 8.1E-39 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 SUPERFAMILY SSF55021 297 359 2.52E-8 T 13-10-2018 BMD_2089 04a2b907f6c5de65a6dde92e275c1a24 460 Pfam PF13840 ACT domain 380 445 4.2E-9 T 13-10-2018 IPR027795 CASTOR, ACT domain BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 SUPERFAMILY SSF53850 87 244 1.55E-21 T 13-10-2018 BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 Pfam PF03466 LysR substrate binding domain 86 268 3.2E-24 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 SUPERFAMILY SSF46785 3 109 5.82E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 Gene3D G3DSA:1.10.10.10 1 90 3.7E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 60 5.9E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3641 784eed50e3be3048101d687d2d51fa7b 291 Gene3D G3DSA:3.40.190.290 91 290 6.9E-24 T 13-10-2018 BMD_2824 025c7dbfc0539e0301c6addf3e382006 225 Gene3D G3DSA:1.10.1900.10 9 91 8.3E-6 T 13-10-2018 BMD_2824 025c7dbfc0539e0301c6addf3e382006 225 SUPERFAMILY SSF158560 1 91 1.44E-26 T 13-10-2018 BMD_2824 025c7dbfc0539e0301c6addf3e382006 225 Pfam PF06570 Protein of unknown function (DUF1129) 16 224 1.5E-16 T 13-10-2018 IPR009214 Protein of unknown function DUF1129 BMD_3175 f83558d0fc0141a140c25fc7fb03764b 241 Pfam PF04203 Sortase family 115 236 1.8E-28 T 13-10-2018 IPR005754 Sortase family BMD_3175 f83558d0fc0141a140c25fc7fb03764b 241 SUPERFAMILY SSF63817 102 238 1.11E-36 T 13-10-2018 IPR023365 Sortase domain superfamily BMD_3175 f83558d0fc0141a140c25fc7fb03764b 241 TIGRFAM TIGR01076 sortase_fam: sortase 113 236 4.0E-30 T 13-10-2018 IPR005754 Sortase family BMD_3175 f83558d0fc0141a140c25fc7fb03764b 241 Gene3D G3DSA:2.40.260.10 48 241 1.9E-44 T 13-10-2018 IPR023365 Sortase domain superfamily BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 PIRSF PIRSF002939 3 216 3.2E-95 T 13-10-2018 IPR016371 RNA polymerase sigma-H factor GO:0003677|GO:0006351|GO:0016987 BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 60 73 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 TIGRFAM TIGR02859 spore_sigH: RNA polymerase sigma-H factor 13 208 5.9E-94 T 13-10-2018 IPR014218 RNA polymerase sigma-H type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 SUPERFAMILY SSF88946 16 105 2.35E-23 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 SUPERFAMILY SSF88659 123 209 1.83E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 32 205 3.4E-25 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 Pfam PF04542 Sigma-70 region 2 36 105 2.9E-14 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3805 0d25ff86844f705c7db69192ce82ef8f 216 Pfam PF08281 Sigma-70, region 4 161 205 3.1E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_2504 a25962a1d6701b365cbec364dc5a2cad 195 SMART SM00563 33 144 4.6E-26 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BMD_2504 a25962a1d6701b365cbec364dc5a2cad 195 SUPERFAMILY SSF69593 18 190 1.83E-37 T 13-10-2018 BMD_2504 a25962a1d6701b365cbec364dc5a2cad 195 Pfam PF01553 Acyltransferase 20 142 9.6E-23 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BMD_2504 a25962a1d6701b365cbec364dc5a2cad 195 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 20 141 9.9E-33 T 13-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 BMD_3790 4fe756eca8e3282bacf1025bf79c6e60 378 Gene3D G3DSA:3.10.310.10 175 350 8.2E-141 T 13-10-2018 BMD_3790 4fe756eca8e3282bacf1025bf79c6e60 378 Gene3D G3DSA:3.10.310.10 7 367 8.2E-141 T 13-10-2018 BMD_3790 4fe756eca8e3282bacf1025bf79c6e60 378 SUPERFAMILY SSF54506 3 168 6.43E-62 T 13-10-2018 BMD_3790 4fe756eca8e3282bacf1025bf79c6e60 378 Pfam PF04303 PrpF protein 4 369 2.1E-142 T 13-10-2018 IPR007400 PrpF protein BMD_3790 4fe756eca8e3282bacf1025bf79c6e60 378 SUPERFAMILY SSF54506 173 369 2.75E-53 T 13-10-2018 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 Gene3D G3DSA:1.10.150.170 111 215 1.7E-105 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 309 2.5E-127 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 4 310 38.954 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 Pfam PF01795 MraW methylase family 2 309 9.2E-135 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 Gene3D G3DSA:3.40.50.150 4 308 1.7E-105 T 13-10-2018 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 SUPERFAMILY SSF81799 113 214 9.29E-36 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 PIRSF PIRSF004486 1 311 1.0E-110 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BMD_4271 6ebe928cfea2f1ae377537c0e274ccba 311 SUPERFAMILY SSF53335 3 310 2.3E-46 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0570 de0edece486a1b120d1edb9e6169eff6 116 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 6 108 3.5E-24 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA BMD_0570 de0edece486a1b120d1edb9e6169eff6 116 SUPERFAMILY SSF158622 3 113 3.53E-37 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily BMD_0570 de0edece486a1b120d1edb9e6169eff6 116 Gene3D G3DSA:1.20.1500.10 2 113 2.7E-37 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily BMD_0570 de0edece486a1b120d1edb9e6169eff6 116 Hamap MF_01526 UPF0342 protein . 2 113 19.234 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA BMD_1146 e495bedc3771bb431691560058548a44 152 SUPERFAMILY SSF54593 1 125 9.35E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1146 e495bedc3771bb431691560058548a44 152 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 123 7.9E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_1146 e495bedc3771bb431691560058548a44 152 Gene3D G3DSA:3.10.180.10 2 125 9.7E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2550 1b5aae7d009d8515a8a70c00bd647a28 277 Gene3D G3DSA:2.40.290.10 3 183 1.5E-14 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily BMD_2550 1b5aae7d009d8515a8a70c00bd647a28 277 SUPERFAMILY SSF100939 3 250 1.24E-37 T 13-10-2018 IPR016194 SPOC-like, C-terminal domain superfamily BMD_2550 1b5aae7d009d8515a8a70c00bd647a28 277 PIRSF PIRSF006493 1 277 6.7E-77 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type BMD_2550 1b5aae7d009d8515a8a70c00bd647a28 277 TIGRFAM TIGR02772 Ku_bact: Ku protein 3 255 6.8E-75 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type BMD_2550 1b5aae7d009d8515a8a70c00bd647a28 277 SMART SM00559 53 184 4.0E-28 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 BMD_2550 1b5aae7d009d8515a8a70c00bd647a28 277 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 2 255 27.747 T 13-10-2018 IPR009187 Non-homologous end joining protein Ku, prokaryotic type BMD_2550 1b5aae7d009d8515a8a70c00bd647a28 277 Pfam PF02735 Ku70/Ku80 beta-barrel domain 12 197 7.0E-27 T 13-10-2018 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: R-HSA-164843|Reactome: R-HSA-1834949|Reactome: R-HSA-3270619|Reactome: R-HSA-5693571|Reactome: R-HSA-6798695 BMD_2482 23fa911960027c2c4aad5c49525555cf 477 Pfam PF13193 AMP-binding enzyme C-terminal domain 384 456 1.9E-9 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_2482 23fa911960027c2c4aad5c49525555cf 477 SUPERFAMILY SSF56801 4 470 9.29E-98 T 13-10-2018 BMD_2482 23fa911960027c2c4aad5c49525555cf 477 Pfam PF00501 AMP-binding enzyme 124 375 1.4E-43 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_2482 23fa911960027c2c4aad5c49525555cf 477 Pfam PF00501 AMP-binding enzyme 10 93 3.7E-18 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_2482 23fa911960027c2c4aad5c49525555cf 477 ProSitePatterns PS00455 Putative AMP-binding domain signature. 133 144 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_2482 23fa911960027c2c4aad5c49525555cf 477 Gene3D G3DSA:3.30.300.30 370 473 3.5E-21 T 13-10-2018 BMD_2482 23fa911960027c2c4aad5c49525555cf 477 Gene3D G3DSA:3.40.50.12780 1 368 6.2E-70 T 13-10-2018 BMD_0666 b14b034c1c144051763bb056d4901969 336 Gene3D G3DSA:3.30.450.20 2 120 7.5E-13 T 13-10-2018 BMD_0666 b14b034c1c144051763bb056d4901969 336 SUPERFAMILY SSF52540 142 330 1.17E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0666 b14b034c1c144051763bb056d4901969 336 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_0666 b14b034c1c144051763bb056d4901969 336 Pfam PF13426 PAS domain 22 121 1.2E-6 T 13-10-2018 IPR000014 PAS domain BMD_0666 b14b034c1c144051763bb056d4901969 336 SMART SM00382 163 305 1.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0666 b14b034c1c144051763bb056d4901969 336 Gene3D G3DSA:3.40.50.300 128 313 2.2E-60 T 13-10-2018 BMD_0666 b14b034c1c144051763bb056d4901969 336 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 167 180 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_0666 b14b034c1c144051763bb056d4901969 336 Pfam PF00158 Sigma-54 interaction domain 143 308 4.8E-62 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_0666 b14b034c1c144051763bb056d4901969 336 SUPERFAMILY SSF55785 4 116 1.81E-8 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0666 b14b034c1c144051763bb056d4901969 336 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 125 3.6E-9 T 13-10-2018 IPR000014 PAS domain BMD_2293 d92cd6d104944ae29afc50d97f9eb900 235 Pfam PF12431 Transcriptional regulator 135 168 1.0E-5 T 13-10-2018 IPR028141 Transcriptional regulator BMD_2293 d92cd6d104944ae29afc50d97f9eb900 235 Gene3D G3DSA:3.40.50.2300 4 143 1.1E-29 T 13-10-2018 BMD_2293 d92cd6d104944ae29afc50d97f9eb900 235 SMART SM00448 6 119 4.4E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2293 d92cd6d104944ae29afc50d97f9eb900 235 SUPERFAMILY SSF52172 5 144 1.11E-32 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2293 d92cd6d104944ae29afc50d97f9eb900 235 Pfam PF00072 Response regulator receiver domain 8 118 5.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2293 d92cd6d104944ae29afc50d97f9eb900 235 PIRSF PIRSF006171 4 234 1.9E-73 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 BMD_1650 43dbb0c287d55410a8b0ddaeacab8165 363 Gene3D G3DSA:3.30.300.210 207 357 6.3E-39 T 13-10-2018 IPR038501 Spore germination GerAC superfamily BMD_1650 43dbb0c287d55410a8b0ddaeacab8165 363 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 1 356 3.8E-82 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1650 43dbb0c287d55410a8b0ddaeacab8165 363 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 191 354 4.0E-42 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_2939 c1ffff5baf10f541c8b778254deebadb 265 SMART SM00382 28 230 2.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2939 c1ffff5baf10f541c8b778254deebadb 265 Gene3D G3DSA:3.40.50.300 2 263 1.6E-63 T 13-10-2018 BMD_2939 c1ffff5baf10f541c8b778254deebadb 265 SUPERFAMILY SSF52540 3 251 6.06E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2939 c1ffff5baf10f541c8b778254deebadb 265 Pfam PF00005 ABC transporter 20 179 7.0E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2939 c1ffff5baf10f541c8b778254deebadb 265 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 251 4.0E-8 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal BMD_0931 c04bbce8fb5043d2c24d79def0d338d2 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 274 4.5E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0931 c04bbce8fb5043d2c24d79def0d338d2 284 SUPERFAMILY SSF160964 3 35 3.01E-5 T 13-10-2018 BMD_0931 c04bbce8fb5043d2c24d79def0d338d2 284 Gene3D G3DSA:1.10.3720.10 44 282 1.0E-75 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0931 c04bbce8fb5043d2c24d79def0d338d2 284 SUPERFAMILY SSF161098 48 275 2.49E-66 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 SUPERFAMILY SSF46689 6 55 3.76E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 SUPERFAMILY SSF46689 57 110 2.28E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 SMART SM00871 128 288 9.9E-38 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 Pfam PF12833 Helix-turn-helix domain 28 105 7.1E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 Gene3D G3DSA:3.20.80.10 128 290 2.1E-40 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 Gene3D G3DSA:1.10.10.60 4 57 1.3E-13 T 13-10-2018 BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 SMART SM00342 21 104 2.3E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 SUPERFAMILY SSF55136 128 290 1.2E-32 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 Gene3D G3DSA:1.10.10.60 58 116 6.9E-13 T 13-10-2018 BMD_3775 980f1dc75c31b2f2173b88151c9efa78 290 Pfam PF06445 GyrI-like small molecule binding domain 128 287 1.3E-29 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain BMD_4115 0bcda60bfd25395cac4f16e24974f819 319 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 287 2.7E-42 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 46 321 65.504 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 294 307 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 SMART SM00962 120 321 1.2E-124 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 SMART SM00963 22 103 2.5E-27 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 SUPERFAMILY SSF52540 115 318 9.59E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 Gene3D G3DSA:1.20.120.140 20 317 2.6E-117 T 13-10-2018 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 SMART SM00382 119 297 2.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 47 320 1.2E-120 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 Pfam PF02881 SRP54-type protein, helical bundle domain 33 99 5.6E-15 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 SUPERFAMILY SSF47364 18 96 7.2E-22 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 Pfam PF00448 SRP54-type protein, GTPase domain 121 320 7.5E-83 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4204 61b7f6b2552e196d78baeefdca573cff 332 Gene3D G3DSA:3.40.50.300 116 309 2.6E-117 T 13-10-2018 BMD_3066 d1e3bd2a48b9d26a7184bf844b5c29af 255 Gene3D G3DSA:3.40.50.150 18 255 1.0E-57 T 13-10-2018 BMD_3066 d1e3bd2a48b9d26a7184bf844b5c29af 255 Pfam PF13847 Methyltransferase domain 34 130 9.0E-21 T 13-10-2018 IPR025714 Methyltransferase domain BMD_3066 d1e3bd2a48b9d26a7184bf844b5c29af 255 SUPERFAMILY SSF53335 26 207 4.91E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4689 0a1af84a92b86fe74effc43d00e52884 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 190 4.7E-65 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 BMD_4689 0a1af84a92b86fe74effc43d00e52884 197 SUPERFAMILY SSF52972 2 193 3.4E-70 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BMD_4689 0a1af84a92b86fe74effc43d00e52884 197 Pfam PF01725 Ham1 family 4 190 4.3E-60 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 BMD_4689 0a1af84a92b86fe74effc43d00e52884 197 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 195 49.496 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 BMD_4689 0a1af84a92b86fe74effc43d00e52884 197 Gene3D G3DSA:3.90.950.10 1 196 8.6E-78 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SUPERFAMILY SSF52540 543 803 1.72E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 157 1097 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Gene3D G3DSA:3.90.1150.50 1020 1176 1.4E-41 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SMART SM00487 620 810 6.9E-35 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Gene3D G3DSA:2.30.30.840 503 561 9.3E-247 T 13-10-2018 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Gene3D G3DSA:3.40.50.300 562 801 9.3E-247 T 13-10-2018 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Pfam PF00270 DEAD/DEAH box helicase 627 784 4.5E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Pfam PF02559 CarD-like/TRCF domain 500 595 3.0E-32 T 13-10-2018 IPR003711 CarD-like/TRCF domain BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SMART SM00490 846 930 2.8E-17 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SUPERFAMILY SSF52540 802 1009 5.09E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SUPERFAMILY SSF52540 377 490 1.27E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 30 1118 28.7 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Pfam PF00271 Helicase conserved C-terminal domain 829 929 2.5E-15 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SUPERFAMILY SSF141259 490 568 5.23E-26 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Gene3D G3DSA:3.40.50.11180 35 326 2.5E-62 T 13-10-2018 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SUPERFAMILY SSF143517 1014 1166 1.57E-34 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Gene3D G3DSA:3.30.2060.10 140 225 2.5E-62 T 13-10-2018 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SMART SM00982 1024 1124 8.9E-35 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SMART SM01058 499 596 7.2E-51 T 13-10-2018 IPR003711 CarD-like/TRCF domain BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Pfam PF03461 TRCF domain 1025 1117 8.2E-26 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 Gene3D G3DSA:3.40.50.300 498 1008 9.3E-247 T 13-10-2018 BMD_0072 26c8100d614d04b5971d125f7b7517c7 1176 SUPERFAMILY SSF52540 15 367 4.25E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 3 299 1.1E-136 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 SUPERFAMILY SSF53784 1 315 4.58E-118 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 212 224 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 239 261 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 4.0E-91 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 Pfam PF00365 Phosphofructokinase 3 275 5.5E-115 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 318 49.339 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 Gene3D G3DSA:3.40.50.460 142 251 2.2E-118 T 13-10-2018 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 PIRSF PIRSF000532 1 319 1.4E-125 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 ProSitePatterns PS00433 Phosphofructokinase signature. 243 261 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BMD_3977 4c41ef88aa76f47232fa75024c3ad76f 319 Gene3D G3DSA:3.40.50.450 3 279 2.2E-118 T 13-10-2018 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 SMART SM00028 35 68 0.0038 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 SMART SM00028 1 34 0.85 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 SMART SM00028 69 102 1.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 SMART SM00028 103 136 0.0061 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 SMART SM00028 171 204 6.1E-7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 SMART SM00028 137 170 13.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 Pfam PF13181 Tetratricopeptide repeat 69 97 0.0015 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 SUPERFAMILY SSF81901 5 212 1.02E-39 T 13-10-2018 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 Gene3D G3DSA:1.25.40.10 24 219 1.4E-52 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 Pfam PF00515 Tetratricopeptide repeat 171 204 1.7E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 Pfam PF13414 TPR repeat 10 46 1.4E-7 T 13-10-2018 BMD_4603 bac53b86856bc0a6b129e1008a467c6d 219 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 101 162 7.4E-7 T 13-10-2018 BMD_2332 9d40e2956de4ef297bc4b790c9ffc29c 220 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 207 2.8E-90 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 BMD_2332 9d40e2956de4ef297bc4b790c9ffc29c 220 SMART SM00882 5 201 7.6E-58 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_2332 9d40e2956de4ef297bc4b790c9ffc29c 220 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 43 51 - T 13-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 BMD_2332 9d40e2956de4ef297bc4b790c9ffc29c 220 Pfam PF01144 Coenzyme A transferase 6 200 7.1E-31 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_2332 9d40e2956de4ef297bc4b790c9ffc29c 220 SUPERFAMILY SSF100950 2 213 3.01E-65 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_2332 9d40e2956de4ef297bc4b790c9ffc29c 220 Gene3D G3DSA:3.40.1080.10 1 212 2.4E-89 T 13-10-2018 BMD_4087 84be3267ca1f42ba6cc721440975aca8 135 SMART SM00422 12 80 1.3E-27 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_4087 84be3267ca1f42ba6cc721440975aca8 135 Pfam PF13411 MerR HTH family regulatory protein 13 78 2.5E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_4087 84be3267ca1f42ba6cc721440975aca8 135 Gene3D G3DSA:1.10.1660.10 1 82 4.0E-24 T 13-10-2018 BMD_4087 84be3267ca1f42ba6cc721440975aca8 135 SUPERFAMILY SSF46955 12 95 1.33E-18 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_2444 5064bc802e89f6529f785086e153cc1c 467 SUPERFAMILY SSF53383 28 447 1.68E-128 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2444 5064bc802e89f6529f785086e153cc1c 467 Gene3D G3DSA:3.40.640.10 70 361 4.1E-81 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_2444 5064bc802e89f6529f785086e153cc1c 467 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 44 383 1.2E-77 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 BMD_2444 5064bc802e89f6529f785086e153cc1c 467 Gene3D G3DSA:3.90.1150.160 363 467 1.1E-30 T 13-10-2018 BMD_2444 5064bc802e89f6529f785086e153cc1c 467 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 26 448 1.3E-196 T 13-10-2018 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 BMD_1371 76ea17d258656d647e6f674326f806bd 277 PIRSF PIRSF000388 1 266 1.0E-109 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BMD_1371 76ea17d258656d647e6f674326f806bd 277 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 263 42.566 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BMD_1371 76ea17d258656d647e6f674326f806bd 277 Pfam PF02548 Ketopantoate hydroxymethyltransferase 6 259 8.3E-113 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BMD_1371 76ea17d258656d647e6f674326f806bd 277 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 2 263 7.9E-118 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BMD_1371 76ea17d258656d647e6f674326f806bd 277 SUPERFAMILY SSF51621 3 263 9.42E-106 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BMD_1371 76ea17d258656d647e6f674326f806bd 277 Gene3D G3DSA:3.20.20.60 2 273 3.9E-114 T 13-10-2018 BMD_0786 a8fdc47659a4b713ceb6cb9e735ba769 376 TIGRFAM TIGR03297 Ppyr-DeCO2ase: phosphonopyruvate decarboxylase 15 374 2.1E-125 T 13-10-2018 IPR017684 Phosphonopyruvate decarboxylase GO:0032923|GO:0033980 KEGG: 00440+4.1.1.82|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7510|MetaCyc: PWY-7769 BMD_0786 a8fdc47659a4b713ceb6cb9e735ba769 376 Gene3D G3DSA:3.40.50.970 185 366 8.5E-22 T 13-10-2018 BMD_0786 a8fdc47659a4b713ceb6cb9e735ba769 376 Gene3D G3DSA:3.40.50.970 8 118 9.9E-8 T 13-10-2018 BMD_0786 a8fdc47659a4b713ceb6cb9e735ba769 376 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 147 3.1E-8 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_0786 a8fdc47659a4b713ceb6cb9e735ba769 376 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 230 344 4.3E-13 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_0786 a8fdc47659a4b713ceb6cb9e735ba769 376 SUPERFAMILY SSF52518 6 156 1.7E-14 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_0786 a8fdc47659a4b713ceb6cb9e735ba769 376 SUPERFAMILY SSF52518 186 367 1.97E-27 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_5109 0fbe244fc654f118a9731fb085f01590 382 SMART SM00387 288 381 5.9E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5109 0fbe244fc654f118a9731fb085f01590 382 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 290 378 2.2E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5109 0fbe244fc654f118a9731fb085f01590 382 PIRSF PIRSF003169 1 382 7.6E-152 T 13-10-2018 IPR016381 Signal transduction histidine kinase, DegS GO:0000155|GO:0000160|GO:0004673 BMD_5109 0fbe244fc654f118a9731fb085f01590 382 Pfam PF07730 Histidine kinase 180 248 1.9E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BMD_5109 0fbe244fc654f118a9731fb085f01590 382 SUPERFAMILY SSF55874 260 378 1.96E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5109 0fbe244fc654f118a9731fb085f01590 382 Gene3D G3DSA:3.30.565.10 246 381 2.7E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5109 0fbe244fc654f118a9731fb085f01590 382 Pfam PF05384 Sensor protein DegS 12 170 7.1E-57 T 13-10-2018 IPR008595 Sensor DegS GO:0007165|GO:0016301 BMD_3308 505e5947c2d0d3330562d5d6d158110d 406 Gene3D G3DSA:1.20.1250.20 202 398 6.0E-21 T 13-10-2018 BMD_3308 505e5947c2d0d3330562d5d6d158110d 406 SUPERFAMILY SSF103473 6 391 1.83E-59 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3308 505e5947c2d0d3330562d5d6d158110d 406 Pfam PF07690 Major Facilitator Superfamily 18 360 8.2E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3308 505e5947c2d0d3330562d5d6d158110d 406 Gene3D G3DSA:1.20.1250.20 2 198 3.1E-32 T 13-10-2018 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 222 254 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 128 154 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 354 372 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 244 263 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 313 338 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 27 51 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 193 218 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 163 189 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PRINTS PR00083 Histidinol dehydrogenase signature 222 243 8.3E-88 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 PIRSF PIRSF000099 2 422 1.2E-170 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 1 420 42.356 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 27 419 7.1E-168 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 Gene3D G3DSA:3.40.50.1980 226 342 2.4E-125 T 13-10-2018 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 SUPERFAMILY SSF53720 21 420 9.42E-85 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 Pfam PF00815 Histidinol dehydrogenase 20 420 4.6E-170 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BMD_5057 8a0be1e0cd45b7119326ac320655b05d 422 Gene3D G3DSA:3.40.50.1980 26 225 2.4E-125 T 13-10-2018 BMD_3177 999166ce79e4ad25b3fd4ff99d7ffe0b 189 Pfam PF13302 Acetyltransferase (GNAT) domain 14 150 1.5E-22 T 13-10-2018 IPR000182 GNAT domain BMD_3177 999166ce79e4ad25b3fd4ff99d7ffe0b 189 SUPERFAMILY SSF55729 7 175 9.33E-44 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3177 999166ce79e4ad25b3fd4ff99d7ffe0b 189 Gene3D G3DSA:3.40.630.30 2 176 1.8E-49 T 13-10-2018 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 Gene3D G3DSA:3.20.20.100 1 278 1.1E-99 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 42 59 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 PIRSF PIRSF000097 1 280 1.3E-79 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 Pfam PF00248 Aldo/keto reductase family 19 263 1.5E-44 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 PRINTS PR00069 Aldo-keto reductase signature 160 189 4.4E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 PRINTS PR00069 Aldo-keto reductase signature 198 222 4.4E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 PRINTS PR00069 Aldo-keto reductase signature 94 112 4.4E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 PRINTS PR00069 Aldo-keto reductase signature 126 143 4.4E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 PRINTS PR00069 Aldo-keto reductase signature 38 62 4.4E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 126 143 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 SUPERFAMILY SSF51430 8 266 5.37E-82 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1514 30a299e8dff5c807a8f4b4b5516fad43 280 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 231 246 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_5227 968be916b9cc45834f31c647a6baeb82 749 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 646 737 7.5E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5227 968be916b9cc45834f31c647a6baeb82 749 Gene3D G3DSA:3.30.565.10 602 749 5.9E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5227 968be916b9cc45834f31c647a6baeb82 749 SUPERFAMILY SSF55874 601 737 1.86E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5227 968be916b9cc45834f31c647a6baeb82 749 Gene3D G3DSA:1.10.287.130 518 600 4.4E-21 T 13-10-2018 BMD_5227 968be916b9cc45834f31c647a6baeb82 749 PRINTS PR00344 Bacterial sensor protein C-terminal signature 714 732 4.5E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5227 968be916b9cc45834f31c647a6baeb82 749 PRINTS PR00344 Bacterial sensor protein C-terminal signature 699 709 4.5E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5227 968be916b9cc45834f31c647a6baeb82 749 Pfam PF00512 His Kinase A (phospho-acceptor) domain 533 598 3.9E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5227 968be916b9cc45834f31c647a6baeb82 749 SMART SM00387 644 749 1.3E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5227 968be916b9cc45834f31c647a6baeb82 749 SUPERFAMILY SSF47384 523 599 2.75E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_5227 968be916b9cc45834f31c647a6baeb82 749 SMART SM00388 532 598 1.2E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4230 17e1598b9881fba9f8dace7686dacd3e 73 SUPERFAMILY SSF63562 1 67 2.09E-21 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BMD_4230 17e1598b9881fba9f8dace7686dacd3e 73 SMART SM01409 8 61 5.6E-14 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BMD_4230 17e1598b9881fba9f8dace7686dacd3e 73 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 1.7E-20 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_4230 17e1598b9881fba9f8dace7686dacd3e 73 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 14.976 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_4230 17e1598b9881fba9f8dace7686dacd3e 73 Gene3D G3DSA:3.90.940.10 1 73 2.2E-18 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BMD_4230 17e1598b9881fba9f8dace7686dacd3e 73 Pfam PF01192 RNA polymerase Rpb6 9 60 1.3E-12 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BMD_3579 8ff416b03e96840e62b5cf402affe14a 185 SUPERFAMILY SSF52218 1 169 9.47E-34 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3579 8ff416b03e96840e62b5cf402affe14a 185 Pfam PF03358 NADPH-dependent FMN reductase 1 143 2.5E-30 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BMD_3579 8ff416b03e96840e62b5cf402affe14a 185 Gene3D G3DSA:3.40.50.360 1 176 3.0E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_5209 373596f4a4b3494832cc5ba2fbcf06df 111 Pfam PF00892 EamA-like transporter family 17 106 5.9E-7 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_5209 373596f4a4b3494832cc5ba2fbcf06df 111 SUPERFAMILY SSF103481 15 108 1.57E-11 T 13-10-2018 BMD_5209 373596f4a4b3494832cc5ba2fbcf06df 111 Gene3D G3DSA:1.10.3730.20 10 110 1.8E-6 T 13-10-2018 BMD_2167 cce17b23124afc7e8185fe6c59d29ff3 93 Pfam PF00708 Acylphosphatase 5 89 4.3E-27 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BMD_2167 cce17b23124afc7e8185fe6c59d29ff3 93 Gene3D G3DSA:3.30.70.100 3 93 2.7E-29 T 13-10-2018 BMD_2167 cce17b23124afc7e8185fe6c59d29ff3 93 SUPERFAMILY SSF54975 3 91 6.32E-27 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BMD_2167 cce17b23124afc7e8185fe6c59d29ff3 93 ProSitePatterns PS00150 Acylphosphatase signature 1. 9 19 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 SUPERFAMILY SSF52317 4 224 9.7E-61 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 Pfam PF00958 GMP synthase C terminal domain 417 508 1.1E-44 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 Gene3D G3DSA:3.30.300.10 390 509 4.0E-52 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 2 509 55.135 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 SUPERFAMILY SSF54810 389 509 7.72E-51 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 Gene3D G3DSA:3.40.50.620 197 389 1.9E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 76 92 7.7E-6 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 5 19 7.7E-6 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 46 60 7.7E-6 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00096 Glutamine amidotransferase superfamily signature 76 87 2.1E-7 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 2.1E-7 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00096 Glutamine amidotransferase superfamily signature 49 58 2.1E-7 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 Pfam PF02540 NAD synthase 210 280 8.5E-6 T 13-10-2018 IPR022310 NAD/GMP synthase BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 199 509 2.5E-158 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 Pfam PF00117 Glutamine amidotransferase class-I 6 187 5.0E-45 T 13-10-2018 IPR017926 Glutamine amidotransferase BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 SUPERFAMILY SSF52402 184 402 4.41E-61 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00097 Anthranilate synthase component II signature 49 58 2.3E-5 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00097 Anthranilate synthase component II signature 76 87 2.3E-5 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 PRINTS PR00097 Anthranilate synthase component II signature 164 177 2.3E-5 T 13-10-2018 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 5 191 4.0E-84 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BMD_0265 4282f7a3945f5eab015717c1d2a5b73e 509 Gene3D G3DSA:3.40.50.880 2 196 4.0E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 Pfam PF00696 Amino acid kinase family 3 229 3.1E-54 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 Gene3D G3DSA:3.30.70.260 260 337 5.6E-48 T 13-10-2018 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 Pfam PF13840 ACT domain 335 397 8.6E-16 T 13-10-2018 IPR027795 CASTOR, ACT domain BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 SUPERFAMILY SSF53633 3 242 2.36E-72 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 SUPERFAMILY SSF55021 328 405 1.76E-21 T 13-10-2018 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 SUPERFAMILY SSF55021 249 324 1.47E-12 T 13-10-2018 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 Gene3D G3DSA:3.40.1160.10 1 253 2.3E-90 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 PIRSF PIRSF000726 1 60 3.7E-22 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 PIRSF PIRSF000726 54 409 1.5E-132 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 401 6.4E-120 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 Gene3D G3DSA:3.30.70.260 254 402 5.6E-48 T 13-10-2018 BMD_4713 7777dd7e8446c8bd19ac571664eeb708 410 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 402 8.2E-149 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_3330 cdb8415dd7993cb92329577114108d5a 450 SUPERFAMILY SSF51679 4 431 4.42E-125 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_3330 cdb8415dd7993cb92329577114108d5a 450 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 425 1.5E-158 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_3330 cdb8415dd7993cb92329577114108d5a 450 PIRSF PIRSF000337 3 440 2.1E-144 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_3330 cdb8415dd7993cb92329577114108d5a 450 Pfam PF00296 Luciferase-like monooxygenase 22 380 2.0E-59 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_5272 febbbfcfdbfb2692f906664417c08b7d 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5272 febbbfcfdbfb2692f906664417c08b7d 44 Pfam PF00468 Ribosomal protein L34 1 44 1.2E-23 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5272 febbbfcfdbfb2692f906664417c08b7d 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 7.7E-21 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5272 febbbfcfdbfb2692f906664417c08b7d 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 26 7.0E-7 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5272 febbbfcfdbfb2692f906664417c08b7d 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.018 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 Gene3D G3DSA:3.40.605.10 11 249 1.5E-153 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 SUPERFAMILY SSF53720 3 471 7.07E-152 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 Gene3D G3DSA:3.40.309.10 250 429 1.5E-153 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 272 283 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 244 251 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 Gene3D G3DSA:3.40.605.10 430 478 1.0E-5 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 Pfam PF00171 Aldehyde dehydrogenase family 13 470 1.3E-158 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_1546 b2825f730e9d4d1473c123ce9c0791ab 479 PIRSF PIRSF036492 23 478 9.6E-84 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 BMD_4634 06449ab601ae9b9b49b57cfb9156571e 290 SUPERFAMILY SSF56112 7 215 1.57E-14 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_4634 06449ab601ae9b9b49b57cfb9156571e 290 Pfam PF01636 Phosphotransferase enzyme family 52 205 6.4E-6 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase BMD_4634 06449ab601ae9b9b49b57cfb9156571e 290 Gene3D G3DSA:3.90.1200.10 71 289 3.6E-13 T 13-10-2018 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00385 P450 superfamily signature 342 351 2.5E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00385 P450 superfamily signature 276 287 2.5E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00385 P450 superfamily signature 351 362 2.5E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00385 P450 superfamily signature 241 258 2.5E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 Pfam PF00067 Cytochrome P450 53 398 1.2E-34 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 SUPERFAMILY SSF48264 29 400 3.14E-94 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 344 353 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 Gene3D G3DSA:1.10.630.10 2 403 1.5E-123 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 321 336 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 293 320 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 351 362 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 86 97 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 149 164 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 132 148 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 195 217 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 342 351 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2035 3b3f56cfce3fff50cc3b43dae6470cff 403 PRINTS PR00359 B-class P450 signature 276 287 7.9E-54 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_2479 0729762fa865f0d528bf16900d8172c7 74 Gene3D G3DSA:3.10.180.10 1 74 5.6E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2479 0729762fa865f0d528bf16900d8172c7 74 SUPERFAMILY SSF54593 5 74 1.26E-8 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2479 0729762fa865f0d528bf16900d8172c7 74 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 21 72 3.3E-4 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 304 6.5E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 SMART SM00388 239 305 1.4E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 SMART SM00387 349 460 3.5E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 Gene3D G3DSA:1.10.8.500 185 235 2.7E-12 T 13-10-2018 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 Gene3D G3DSA:3.30.565.10 307 460 3.3E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 SUPERFAMILY SSF158472 186 236 1.57E-11 T 13-10-2018 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 Gene3D G3DSA:1.10.287.130 236 306 3.0E-20 T 13-10-2018 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 Pfam PF00672 HAMP domain 186 234 6.0E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 SMART SM00304 186 238 3.2E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 6.3E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 6.3E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 6.3E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 6.3E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 459 1.0E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 SUPERFAMILY SSF47384 222 304 2.35E-18 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_3275 b757d658b3118c74efa7b1565e231bf1 460 SUPERFAMILY SSF55874 295 459 5.24E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 Pfam PF01926 50S ribosome-binding GTPase 6 120 5.7E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 Pfam PF01926 50S ribosome-binding GTPase 179 295 2.3E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 Gene3D G3DSA:3.40.50.300 171 350 1.3E-54 T 13-10-2018 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 Gene3D G3DSA:3.40.50.300 1 163 1.2E-46 T 13-10-2018 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 SUPERFAMILY SSF52540 138 433 2.94E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 125 5.8E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 176 339 5.0E-25 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 SUPERFAMILY SSF52540 4 166 2.52E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 PIRSF PIRSF006485 2 436 2.3E-174 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 Hamap MF_00195 GTPase Der [der]. 3 436 41.312 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 4 432 1.1E-179 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 Gene3D G3DSA:3.30.300.20 353 436 6.8E-37 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 353 433 5.5E-36 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 248 266 2.2E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4325 fa95a6d3f6b0a02b83d6ef1b9c1b34ad 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 178 198 2.2E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.9E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 1.9E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.9E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 1.9E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 Gene3D G3DSA:1.10.10.10 1 141 3.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 SUPERFAMILY SSF46785 24 141 1.51E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 Pfam PF01047 MarR family 35 91 3.2E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2064 9035f83d6d7e0e8cf36f104eb1576290 143 SMART SM00347 27 127 8.4E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_4400 04157386498cc6d6d10927088077e4a5 282 Gene3D G3DSA:3.40.50.720 2 167 6.7E-48 T 13-10-2018 BMD_4400 04157386498cc6d6d10927088077e4a5 282 SUPERFAMILY SSF51735 6 163 2.75E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4400 04157386498cc6d6d10927088077e4a5 282 SUPERFAMILY SSF48179 164 272 6.97E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4400 04157386498cc6d6d10927088077e4a5 282 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 165 268 1.2E-34 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_4400 04157386498cc6d6d10927088077e4a5 282 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 5 269 25.675 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_4400 04157386498cc6d6d10927088077e4a5 282 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 7 102 4.8E-21 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BMD_4400 04157386498cc6d6d10927088077e4a5 282 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 7 268 7.6E-83 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_4400 04157386498cc6d6d10927088077e4a5 282 PIRSF PIRSF000193 5 272 6.6E-76 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_4400 04157386498cc6d6d10927088077e4a5 282 Gene3D G3DSA:1.10.3730.10 168 273 6.1E-39 T 13-10-2018 BMD_0161 811708086f9e09c9f018149457863dc7 120 Pfam PF01196 Ribosomal protein L17 16 120 4.9E-39 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0161 811708086f9e09c9f018149457863dc7 120 ProSitePatterns PS01167 Ribosomal protein L17 signature. 30 52 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0161 811708086f9e09c9f018149457863dc7 120 SUPERFAMILY SSF64263 2 120 5.49E-44 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0161 811708086f9e09c9f018149457863dc7 120 TIGRFAM TIGR00059 L17: ribosomal protein bL17 2 120 4.2E-48 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0161 811708086f9e09c9f018149457863dc7 120 Gene3D G3DSA:3.90.1030.10 1 120 1.6E-49 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0161 811708086f9e09c9f018149457863dc7 120 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 1 120 28.501 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0490 82d7fca40d8b8e8dd18997e35e6ae2c3 426 SUPERFAMILY SSF103473 19 408 4.84E-48 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0490 82d7fca40d8b8e8dd18997e35e6ae2c3 426 Gene3D G3DSA:1.20.1250.20 11 207 4.7E-15 T 13-10-2018 BMD_0490 82d7fca40d8b8e8dd18997e35e6ae2c3 426 TIGRFAM TIGR00897 2A0118: polyol permease 9 406 8.7E-181 T 13-10-2018 IPR004748 Polyol permease GO:0016021|GO:0022857|GO:0055085 BMD_0490 82d7fca40d8b8e8dd18997e35e6ae2c3 426 Gene3D G3DSA:1.20.1250.20 220 413 2.5E-19 T 13-10-2018 BMD_0490 82d7fca40d8b8e8dd18997e35e6ae2c3 426 Pfam PF07690 Major Facilitator Superfamily 41 311 3.7E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2169 8e67e9896c7c6ec44f99361aaffdbaa1 336 Gene3D G3DSA:3.20.20.30 1 332 1.8E-96 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2169 8e67e9896c7c6ec44f99361aaffdbaa1 336 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 4 328 1.7E-117 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 BMD_2169 8e67e9896c7c6ec44f99361aaffdbaa1 336 Pfam PF00296 Luciferase-like monooxygenase 10 295 7.7E-34 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_2169 8e67e9896c7c6ec44f99361aaffdbaa1 336 SUPERFAMILY SSF51679 2 328 8.01E-69 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_0389 141363d545173a08526c0fa835e0c288 461 SUPERFAMILY SSF50249 3 65 7.42E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0389 141363d545173a08526c0fa835e0c288 461 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 23 452 6.7E-179 T 13-10-2018 BMD_0389 141363d545173a08526c0fa835e0c288 461 Pfam PF01938 TRAM domain 10 65 2.2E-10 T 13-10-2018 IPR002792 TRAM domain BMD_0389 141363d545173a08526c0fa835e0c288 461 Gene3D G3DSA:3.40.1350.30 137 292 7.3E-113 T 13-10-2018 BMD_0389 141363d545173a08526c0fa835e0c288 461 Gene3D G3DSA:2.40.50.140 2 86 1.5E-23 T 13-10-2018 BMD_0389 141363d545173a08526c0fa835e0c288 461 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 391 422 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site BMD_0389 141363d545173a08526c0fa835e0c288 461 SUPERFAMILY SSF53335 75 456 2.5E-77 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0389 141363d545173a08526c0fa835e0c288 461 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 134 458 7.9E-18 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 BMD_0389 141363d545173a08526c0fa835e0c288 461 Gene3D G3DSA:3.40.50.150 88 454 7.3E-113 T 13-10-2018 BMD_0389 141363d545173a08526c0fa835e0c288 461 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 442 452 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 5.3E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 5.3E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 5.3E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 5.3E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.3E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 5.3E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 Gene3D G3DSA:3.40.50.720 1 261 5.6E-91 T 13-10-2018 BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 SUPERFAMILY SSF51735 6 251 2.01E-85 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3374 7e91e9015c80b7e98bda6148928ad7f6 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 251 8.9E-66 T 13-10-2018 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 PRINTS PR01036 Tetracycline resistance protein TetB signature 129 153 5.9E-10 T 13-10-2018 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 PRINTS PR01036 Tetracycline resistance protein TetB signature 8 32 5.9E-10 T 13-10-2018 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 PRINTS PR01036 Tetracycline resistance protein TetB signature 67 89 5.9E-10 T 13-10-2018 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 PRINTS PR01036 Tetracycline resistance protein TetB signature 194 212 5.9E-10 T 13-10-2018 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 PRINTS PR01036 Tetracycline resistance protein TetB signature 392 411 5.9E-10 T 13-10-2018 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 SUPERFAMILY SSF103473 2 476 3.53E-70 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1539 48d64df592e1747c7d6b1022417baa36 486 Gene3D G3DSA:1.20.1250.20 251 482 2.7E-21 T 13-10-2018 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 6 413 7.4E-69 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 Pfam PF07690 Major Facilitator Superfamily 9 401 6.1E-56 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1539 48d64df592e1747c7d6b1022417baa36 486 Gene3D G3DSA:1.20.1720.10 5 214 2.0E-54 T 13-10-2018 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 44.202 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 8.5E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 8.5E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 8.5E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 8.5E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 8.5E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 90 101 - T 13-10-2018 IPR018215 ClpP, Ser active site BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 13-10-2018 IPR033135 ClpP, histidine active site BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 Pfam PF00574 Clp protease 13 192 1.7E-86 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 SUPERFAMILY SSF52096 10 192 3.42E-73 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 Gene3D G3DSA:3.90.226.10 1 194 1.4E-83 T 13-10-2018 BMD_5044 c18a6d215dece8b6645de102f4c2a8ac 195 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 191 1.6E-107 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 133 225 1.7E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 231 7.2E-23 T 13-10-2018 BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 SUPERFAMILY SSF56784 1 259 4.0E-42 T 13-10-2018 IPR036412 HAD-like superfamily BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 Gene3D G3DSA:1.20.120.710 15 52 1.9E-5 T 13-10-2018 BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 Gene3D G3DSA:1.20.120.710 88 130 8.0E-43 T 13-10-2018 BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 132 231 2.7E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 Gene3D G3DSA:3.40.50.1000 131 253 8.0E-43 T 13-10-2018 IPR023214 HAD superfamily BMD_2513 7135670223839e70478f1d9d37b4d6bd 262 Gene3D G3DSA:3.40.50.1000 3 14 1.9E-5 T 13-10-2018 IPR023214 HAD superfamily BMD_0320 29ba41a2dd233909c030730df897070d 230 SMART SM00862 153 228 7.3E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_0320 29ba41a2dd233909c030730df897070d 230 Gene3D G3DSA:3.40.50.2300 1 124 7.3E-37 T 13-10-2018 BMD_0320 29ba41a2dd233909c030730df897070d 230 SMART SM00448 4 115 9.5E-43 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0320 29ba41a2dd233909c030730df897070d 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 228 9.9E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_0320 29ba41a2dd233909c030730df897070d 230 Pfam PF00072 Response regulator receiver domain 6 116 2.0E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0320 29ba41a2dd233909c030730df897070d 230 SUPERFAMILY SSF46894 129 228 6.52E-32 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_0320 29ba41a2dd233909c030730df897070d 230 SUPERFAMILY SSF52172 3 130 1.99E-41 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0320 29ba41a2dd233909c030730df897070d 230 Gene3D G3DSA:1.10.10.10 128 230 1.3E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 126 143 3.2E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 168 3.2E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 3.2E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 3.2E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 3.2E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 213 232 3.2E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 3.2E-58 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 412 603 3.8E-20 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 SUPERFAMILY SSF47323 619 803 1.36E-41 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Gene3D G3DSA:3.90.740.10 226 410 2.5E-280 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Gene3D G3DSA:3.40.50.620 32 571 2.5E-280 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 4 803 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 SUPERFAMILY SSF50677 224 410 1.26E-54 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Gene3D G3DSA:1.10.730.10 599 740 5.0E-47 T 13-10-2018 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Gene3D G3DSA:2.30.210.10 572 588 2.5E-280 T 13-10-2018 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 SUPERFAMILY SSF52374 2 625 2.04E-148 T 13-10-2018 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Gene3D G3DSA:3.10.20.590 742 804 6.5E-23 T 13-10-2018 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 803 23.376 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Pfam PF08264 Anticodon-binding domain of tRNA 652 764 5.1E-21 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 219 398 7.7E-70 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 Pfam PF09334 tRNA synthetases class I (M) 39 170 1.9E-17 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4834 cb3d75a98f62518cb4a104a46b9aeb27 804 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0354 47004f2866111b57388bbf4639983cf3 165 TIGRFAM TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA 16 154 1.5E-13 T 13-10-2018 IPR018920 ESAT-6 secretion machinery protein EssA/YueC BMD_0354 47004f2866111b57388bbf4639983cf3 165 Pfam PF17355 Family of unknown function (DUF5383) 39 160 4.0E-38 T 13-10-2018 IPR020212 ESX secretion system protein YueC BMD_0354 47004f2866111b57388bbf4639983cf3 165 ProDom PD090911 YUEC MEMBRANE TRANSMEMBRANE 15 134 9.0E-6 T 13-10-2018 IPR020212 ESX secretion system protein YueC BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 SUPERFAMILY SSF52540 84 356 6.99E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 SMART SM00382 150 335 5.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 Gene3D G3DSA:1.10.1140.10 354 472 6.5E-56 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 SUPERFAMILY SSF50615 1 81 1.91E-27 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 Gene3D G3DSA:2.40.10.170 1 82 1.9E-32 T 13-10-2018 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 80 1.8E-25 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 SUPERFAMILY SSF47917 354 469 6.54E-52 T 13-10-2018 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 Gene3D G3DSA:3.40.50.300 84 352 6.0E-115 T 13-10-2018 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 342 351 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 469 57.712 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 469 2.3E-257 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 BMD_5134 2897407e4b1be4923aedb942e56b83c9 473 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 138 351 6.4E-68 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SUPERFAMILY SSF55052 154 236 6.28E-23 T 13-10-2018 IPR035891 CheY-binding domain of CheA BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 388 527 1.1E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Pfam PF01584 CheW-like domain 533 658 5.5E-30 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 281 339 1.1E-13 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SMART SM00073 3 100 1.6E-32 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Gene3D G3DSA:1.20.120.160 1 139 2.0E-39 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SUPERFAMILY SSF47226 2 127 5.36E-34 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SUPERFAMILY SSF47384 281 341 1.02E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 525 8.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 444 8.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 506 8.0E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Gene3D G3DSA:3.30.70.1110 154 238 2.7E-30 T 13-10-2018 IPR037052 Chemotaxis protein CheA, P2 response regulator-binding domain superfamily BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Gene3D G3DSA:2.30.30.40 528 653 4.0E-40 T 13-10-2018 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SUPERFAMILY SSF55874 342 526 2.75E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Gene3D G3DSA:2.40.50.180 551 613 4.0E-40 T 13-10-2018 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SMART SM01231 280 340 6.9E-18 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Pfam PF01627 Hpt domain 5 97 9.2E-21 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Gene3D G3DSA:1.10.287.560 280 340 6.6E-20 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Pfam PF07194 P2 response regulator binding domain 158 235 8.0E-26 T 13-10-2018 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding GO:0000155|GO:0000160|GO:0004673|GO:0006928 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SUPERFAMILY SSF50341 527 658 7.72E-35 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 Gene3D G3DSA:3.30.565.10 341 527 1.3E-60 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SMART SM00260 520 658 5.5E-44 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BMD_4157 4c3238e3ceeff4bda16dbcedd52c67b1 659 SMART SM00387 385 528 1.9E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 Gene3D G3DSA:3.30.70.580 63 223 7.8E-61 T 13-10-2018 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 Pfam PF00849 RNA pseudouridylate synthase 62 195 6.7E-25 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 SUPERFAMILY SSF55120 45 236 1.32E-48 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 Gene3D G3DSA:3.10.290.10 1 57 4.7E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 SMART SM00363 2 59 1.7E-15 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 226 1.9E-53 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 SUPERFAMILY SSF55174 2 67 3.73E-16 T 13-10-2018 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 Gene3D G3DSA:3.30.70.1560 123 215 7.8E-61 T 13-10-2018 BMD_4358 fd802bb810b48fa913b316953dbe6dd9 241 Pfam PF01479 S4 domain 2 48 1.4E-15 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 PRINTS PR00723 Subtilisin serine protease family (S8) signature 226 239 3.5E-21 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 PRINTS PR00723 Subtilisin serine protease family (S8) signature 177 196 3.5E-21 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 PRINTS PR00723 Subtilisin serine protease family (S8) signature 531 547 3.5E-21 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 182 193 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 SUPERFAMILY SSF52025 358 469 5.1E-21 T 13-10-2018 BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 532 542 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 Gene3D G3DSA:3.30.70.80 49 138 9.5E-6 T 13-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 Gene3D G3DSA:3.50.30.30 353 476 6.7E-31 T 13-10-2018 BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 Pfam PF00082 Subtilase family 177 586 4.3E-76 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 Pfam PF02225 PA domain 388 461 3.9E-15 T 13-10-2018 IPR003137 PA domain BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 230 240 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 SUPERFAMILY SSF52743 78 607 7.59E-85 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 Pfam PF05922 Peptidase inhibitor I9 57 141 1.1E-8 T 13-10-2018 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 BMD_2165 0f5ac0ada117cce07290cccde590c81c 803 Gene3D G3DSA:2.60.40.4070 718 796 2.1E-6 T 13-10-2018 BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 89 1.2E-42 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 12 88 2.0E-27 T 13-10-2018 BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 23.265 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 SMART SM01387 8 88 9.6E-54 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 Pfam PF00312 Ribosomal protein S15 8 88 1.3E-38 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 SUPERFAMILY SSF47060 3 89 1.44E-37 T 13-10-2018 IPR009068 S15/NS1, RNA-binding BMD_4133 b209c0fc6bbeec66d68651bce4f3037e 89 Gene3D G3DSA:1.10.287.10 2 89 7.4E-38 T 13-10-2018 BMD_1864 e79bfe5c9669630b85c75e6738c0a5de 98 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 11 84 1.0E-13 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 BMD_1864 e79bfe5c9669630b85c75e6738c0a5de 98 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 4 92 2.0E-25 T 13-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 BMD_3268 610d83d229ca23c65efbee370559386d 500 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 7 189 9.1E-63 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 192 484 3.6E-105 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 3.5E-44 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 3.5E-44 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 3.5E-44 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 3.5E-44 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 330 356 3.5E-44 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 Gene3D G3DSA:3.30.360.10 178 487 6.7E-116 T 13-10-2018 BMD_3268 610d83d229ca23c65efbee370559386d 500 SUPERFAMILY SSF55347 179 487 2.75E-104 T 13-10-2018 BMD_3268 610d83d229ca23c65efbee370559386d 500 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 4 485 3.3E-177 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 SUPERFAMILY SSF51735 2 185 1.3E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3268 610d83d229ca23c65efbee370559386d 500 PIRSF PIRSF000110 1 488 1.3E-183 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_3268 610d83d229ca23c65efbee370559386d 500 Gene3D G3DSA:3.40.50.720 2 177 1.6E-59 T 13-10-2018 BMD_3268 610d83d229ca23c65efbee370559386d 500 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 3 486 79.181 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_4448 95d15386b381453ca0c9ff6abbd9e4fe 168 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 2 166 5.9E-54 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_4448 95d15386b381453ca0c9ff6abbd9e4fe 168 SUPERFAMILY SSF51230 90 165 6.02E-23 T 13-10-2018 IPR011053 Single hybrid motif BMD_4448 95d15386b381453ca0c9ff6abbd9e4fe 168 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 127 140 1.3E-15 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_4448 95d15386b381453ca0c9ff6abbd9e4fe 168 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 95 108 1.3E-15 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_4448 95d15386b381453ca0c9ff6abbd9e4fe 168 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 112 126 1.3E-15 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_4448 95d15386b381453ca0c9ff6abbd9e4fe 168 Pfam PF00364 Biotin-requiring enzyme 92 163 5.0E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_4448 95d15386b381453ca0c9ff6abbd9e4fe 168 Gene3D G3DSA:2.40.50.100 88 165 5.6E-28 T 13-10-2018 BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.1E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 Gene3D G3DSA:3.40.50.2300 161 325 3.3E-83 T 13-10-2018 BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 SUPERFAMILY SSF53822 61 330 3.09E-83 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 Gene3D G3DSA:1.10.260.40 1 60 1.3E-21 T 13-10-2018 BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 SUPERFAMILY SSF47413 2 60 1.62E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 SMART SM00354 2 72 4.5E-33 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 Pfam PF13377 Periplasmic binding protein-like domain 169 328 1.3E-38 T 13-10-2018 BMD_0496 8d3d0b0dae2f2dc20a7647ddd33ceb57 341 Gene3D G3DSA:3.40.50.2300 63 320 3.3E-83 T 13-10-2018 BMD_3870 752ab78c82c9054376b577f88fc959c4 171 Gene3D G3DSA:3.90.226.10 1 133 5.5E-21 T 13-10-2018 BMD_3870 752ab78c82c9054376b577f88fc959c4 171 SUPERFAMILY SSF52096 3 162 7.19E-22 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_3870 752ab78c82c9054376b577f88fc959c4 171 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 126 3.9E-12 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_1988 34e03a9e48a93fff506949a4df3ddd54 492 Pfam PF02080 TrkA-C domain 410 477 4.1E-12 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BMD_1988 34e03a9e48a93fff506949a4df3ddd54 492 Gene3D G3DSA:1.20.1530.20 6 387 1.7E-21 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily BMD_1988 34e03a9e48a93fff506949a4df3ddd54 492 Pfam PF00999 Sodium/hydrogen exchanger family 11 381 1.5E-59 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BMD_1988 34e03a9e48a93fff506949a4df3ddd54 492 Gene3D G3DSA:3.30.70.1450 398 482 3.3E-18 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_1988 34e03a9e48a93fff506949a4df3ddd54 492 SUPERFAMILY SSF116726 395 477 7.59E-13 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_4780 95c9e7b12998f7f99d494c631abc31f8 330 PIRSF PIRSF026567 2 330 3.2E-138 T 13-10-2018 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted BMD_4780 95c9e7b12998f7f99d494c631abc31f8 330 Gene3D G3DSA:1.10.150.470 2 86 5.0E-28 T 13-10-2018 BMD_4780 95c9e7b12998f7f99d494c631abc31f8 330 Pfam PF02384 N-6 DNA Methylase 98 307 8.6E-14 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 BMD_4780 95c9e7b12998f7f99d494c631abc31f8 330 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 218 242 2.7E-6 T 13-10-2018 BMD_4780 95c9e7b12998f7f99d494c631abc31f8 330 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 122 136 2.7E-6 T 13-10-2018 BMD_4780 95c9e7b12998f7f99d494c631abc31f8 330 SUPERFAMILY SSF53335 10 311 6.6E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4780 95c9e7b12998f7f99d494c631abc31f8 330 Gene3D G3DSA:3.40.50.150 88 329 6.9E-51 T 13-10-2018 BMD_0057 7784911ae089882971ad91ca83aef2c6 187 Pfam PF13331 Domain of unknown function (DUF4093) 93 175 5.6E-26 T 13-10-2018 IPR025156 Ribonuclease M5, C-terminal domain BMD_0057 7784911ae089882971ad91ca83aef2c6 187 TIGRFAM TIGR00334 5S_RNA_mat_M5: ribonuclease M5 2 175 8.5E-63 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 BMD_0057 7784911ae089882971ad91ca83aef2c6 187 SUPERFAMILY SSF110455 1 114 2.62E-35 T 13-10-2018 BMD_0057 7784911ae089882971ad91ca83aef2c6 187 Pfam PF13662 Toprim domain 4 66 3.1E-8 T 13-10-2018 IPR006171 TOPRIM domain BMD_0057 7784911ae089882971ad91ca83aef2c6 187 Hamap MF_01469 Ribonuclease M5 [rnmV]. 3 178 32.681 T 13-10-2018 IPR004466 Ribonuclease M5 GO:0043822 BMD_0057 7784911ae089882971ad91ca83aef2c6 187 Gene3D G3DSA:3.40.1360.20 1 117 3.8E-25 T 13-10-2018 BMD_0057 7784911ae089882971ad91ca83aef2c6 187 SMART SM00493 4 77 2.8E-7 T 13-10-2018 IPR006171 TOPRIM domain BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 209 222 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 108 116 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 399 412 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 133 148 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 343 354 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 195 208 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 286 300 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 82 95 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 PRINTS PR00415 Aconitase family signature 119 132 3.9E-44 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 Gene3D G3DSA:3.30.499.10 327 471 3.1E-48 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 Pfam PF00330 Aconitase family (aconitate hydratase) 8 457 3.0E-156 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 Gene3D G3DSA:3.30.499.20 5 286 1.8E-101 T 13-10-2018 BMD_4681 3155df3761220816232463fcbab78026 471 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 465 1.1E-237 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 SUPERFAMILY SSF53732 2 466 6.93E-166 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BMD_4681 3155df3761220816232463fcbab78026 471 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 466 57.962 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 BMD_1833 7a61fb728f92ba616d029c502b5f89cd 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 312 4.1E-42 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1833 7a61fb728f92ba616d029c502b5f89cd 317 Gene3D G3DSA:1.10.3720.10 85 308 1.9E-22 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1833 7a61fb728f92ba616d029c502b5f89cd 317 SUPERFAMILY SSF161098 90 297 2.45E-17 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0604 334119a60d76bda3301a05a352449aaf 189 Gene3D G3DSA:1.10.10.60 2 49 9.9E-16 T 13-10-2018 BMD_0604 334119a60d76bda3301a05a352449aaf 189 SUPERFAMILY SSF46689 4 77 1.07E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0604 334119a60d76bda3301a05a352449aaf 189 ProSitePatterns PS01081 TetR-type HTH domain signature. 21 51 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_0604 334119a60d76bda3301a05a352449aaf 189 Gene3D G3DSA:1.10.357.10 50 188 1.1E-18 T 13-10-2018 BMD_0604 334119a60d76bda3301a05a352449aaf 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 30 53 2.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0604 334119a60d76bda3301a05a352449aaf 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 9 22 2.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0604 334119a60d76bda3301a05a352449aaf 189 SUPERFAMILY SSF48498 84 188 4.38E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_0604 334119a60d76bda3301a05a352449aaf 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 5.5E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3699 164803216a6d4f8874f571b6475d7fb3 315 SUPERFAMILY SSF103481 204 307 4.18E-18 T 13-10-2018 BMD_3699 164803216a6d4f8874f571b6475d7fb3 315 Pfam PF00892 EamA-like transporter family 169 302 8.7E-31 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3699 164803216a6d4f8874f571b6475d7fb3 315 Pfam PF00892 EamA-like transporter family 27 156 9.2E-27 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3699 164803216a6d4f8874f571b6475d7fb3 315 SUPERFAMILY SSF103481 58 159 7.06E-16 T 13-10-2018 BMD_4697 f41ff58e05839f177a86fed918e52484 672 Gene3D G3DSA:3.90.1310.10 156 334 2.2E-48 T 13-10-2018 BMD_4697 f41ff58e05839f177a86fed918e52484 672 Gene3D G3DSA:3.10.450.100 26 143 4.3E-18 T 13-10-2018 BMD_4697 f41ff58e05839f177a86fed918e52484 672 Gene3D G3DSA:3.30.1390.30 176 250 2.2E-48 T 13-10-2018 BMD_4697 f41ff58e05839f177a86fed918e52484 672 SUPERFAMILY SSF54427 30 145 7.01E-27 T 13-10-2018 IPR032710 NTF2-like domain superfamily BMD_4697 f41ff58e05839f177a86fed918e52484 672 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 28 147 7.0E-29 T 13-10-2018 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 BMD_4697 f41ff58e05839f177a86fed918e52484 672 Gene3D G3DSA:3.40.710.10 339 672 4.3E-93 T 13-10-2018 BMD_4697 f41ff58e05839f177a86fed918e52484 672 Pfam PF00905 Penicillin binding protein transpeptidase domain 357 667 2.5E-72 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_4697 f41ff58e05839f177a86fed918e52484 672 SUPERFAMILY SSF56519 149 339 4.97E-36 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BMD_4697 f41ff58e05839f177a86fed918e52484 672 Pfam PF03717 Penicillin-binding Protein dimerisation domain 156 325 4.9E-34 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BMD_4697 f41ff58e05839f177a86fed918e52484 672 SUPERFAMILY SSF56601 341 671 1.58E-85 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_4804 39974d542c342c362501ec956a96916a 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 6.8E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_4804 39974d542c342c362501ec956a96916a 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 6.8E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_4804 39974d542c342c362501ec956a96916a 332 SMART SM00354 2 72 6.3E-38 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_4804 39974d542c342c362501ec956a96916a 332 Gene3D G3DSA:3.40.50.2300 161 291 2.6E-99 T 13-10-2018 BMD_4804 39974d542c342c362501ec956a96916a 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 6.9E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_4804 39974d542c342c362501ec956a96916a 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 BMD_4804 39974d542c342c362501ec956a96916a 332 Gene3D G3DSA:1.10.260.40 1 60 4.1E-28 T 13-10-2018 BMD_4804 39974d542c342c362501ec956a96916a 332 SUPERFAMILY SSF47413 3 60 3.87E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_4804 39974d542c342c362501ec956a96916a 332 Gene3D G3DSA:3.40.50.2300 62 308 2.6E-99 T 13-10-2018 BMD_4804 39974d542c342c362501ec956a96916a 332 Pfam PF13377 Periplasmic binding protein-like domain 169 331 1.4E-34 T 13-10-2018 BMD_4804 39974d542c342c362501ec956a96916a 332 SUPERFAMILY SSF53822 62 332 6.09E-90 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_4804 39974d542c342c362501ec956a96916a 332 TIGRFAM TIGR01481 ccpA: catabolite control protein A 2 332 2.0E-160 T 13-10-2018 IPR006377 Catabolite control protein A GO:0006355 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 56 152 2.4E-25 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 SUPERFAMILY SSF56553 50 171 1.24E-44 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 253 310 1.0E-25 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 313 37.751 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 SUPERFAMILY SSF47789 247 313 7.85E-25 T 13-10-2018 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 SUPERFAMILY SSF55257 5 230 1.96E-33 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 240 305 1.9E-29 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 SMART SM00662 20 227 1.5E-102 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 Gene3D G3DSA:1.10.150.20 237 314 1.5E-34 T 13-10-2018 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 26 221 9.8E-25 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 Gene3D G3DSA:2.170.120.12 50 170 1.9E-91 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 Gene3D G3DSA:3.30.1360.10 17 221 1.9E-91 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0160 a686880c2d1ebbbda537dabb6da8ce47 314 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 20 313 1.6E-127 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 342 4.7E-160 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 SUPERFAMILY SSF51735 5 157 5.57E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 Gene3D G3DSA:3.30.360.10 128 324 1.3E-143 T 13-10-2018 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 PIRSF PIRSF000148 4 346 8.5E-133 T 13-10-2018 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 237 251 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 7 119 7.0E-35 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 SUPERFAMILY SSF55347 129 328 4.76E-75 T 13-10-2018 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 327 2.4E-57 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 Gene3D G3DSA:3.40.50.720 7 338 1.3E-143 T 13-10-2018 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 341 38.811 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4126 d5715ba9008916e62e5f088eb82cdaaa 347 SMART SM00859 6 121 4.2E-46 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BMD_0718 f2e6dc4169999ad83ca883ed7fc43217 222 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 9 181 9.0E-67 T 13-10-2018 IPR022301 Integral membrane protein YjbE BMD_0718 f2e6dc4169999ad83ca883ed7fc43217 222 Pfam PF03741 Integral membrane protein TerC family 12 180 3.4E-42 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BMD_4636 4bd2a87c7308b2ae413b1a5f671abc1c 366 Hamap MF_00569 Quinolinate synthase A [nadA]. 20 365 55.537 T 13-10-2018 IPR023515 Quinolinate synthase A, type 3 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BMD_4636 4bd2a87c7308b2ae413b1a5f671abc1c 366 Pfam PF02445 Quinolinate synthetase A protein 27 364 9.4E-107 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BMD_4636 4bd2a87c7308b2ae413b1a5f671abc1c 366 Gene3D G3DSA:3.40.50.10800 110 364 3.4E-82 T 13-10-2018 BMD_4636 4bd2a87c7308b2ae413b1a5f671abc1c 366 Gene3D G3DSA:3.40.50.10800 27 346 3.4E-82 T 13-10-2018 BMD_4636 4bd2a87c7308b2ae413b1a5f671abc1c 366 Gene3D G3DSA:3.40.50.10800 228 313 3.4E-82 T 13-10-2018 BMD_4636 4bd2a87c7308b2ae413b1a5f671abc1c 366 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 20 364 1.8E-115 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BMD_4636 4bd2a87c7308b2ae413b1a5f671abc1c 366 SUPERFAMILY SSF142754 32 364 4.97E-96 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BMD_3946 dfe681221f789666fca76934c1e75cdd 239 Gene3D G3DSA:3.40.630.100 26 239 1.0E-70 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily BMD_3946 dfe681221f789666fca76934c1e75cdd 239 Pfam PF05908 Poly-gamma-glutamate hydrolase 32 220 6.1E-62 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase BMD_4802 0fc10a321cd27aa6a959fa6df6404b73 203 SUPERFAMILY SSF103088 80 197 6.41E-31 T 13-10-2018 IPR036737 OmpA-like domain superfamily BMD_4802 0fc10a321cd27aa6a959fa6df6404b73 203 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 1 37 1.7E-14 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain BMD_4802 0fc10a321cd27aa6a959fa6df6404b73 203 Pfam PF00691 OmpA family 92 191 5.2E-19 T 13-10-2018 IPR006665 OmpA-like domain BMD_4802 0fc10a321cd27aa6a959fa6df6404b73 203 Gene3D G3DSA:3.30.1330.60 42 202 3.9E-47 T 13-10-2018 IPR036737 OmpA-like domain superfamily BMD_4225 9686d30c189da606711908357b30089d 446 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 445 3.5E-154 T 13-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 BMD_4225 9686d30c189da606711908357b30089d 446 Pfam PF01029 NusB family 5 128 3.0E-30 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BMD_4225 9686d30c189da606711908357b30089d 446 Gene3D G3DSA:1.10.940.10 1 144 1.9E-40 T 13-10-2018 IPR035926 NusB-like superfamily BMD_4225 9686d30c189da606711908357b30089d 446 Gene3D G3DSA:3.40.50.150 145 444 1.6E-80 T 13-10-2018 BMD_4225 9686d30c189da606711908357b30089d 446 Pfam PF01189 16S rRNA methyltransferase RsmB/F 246 443 1.7E-59 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 BMD_4225 9686d30c189da606711908357b30089d 446 SUPERFAMILY SSF48013 3 130 5.1E-37 T 13-10-2018 IPR035926 NusB-like superfamily BMD_4225 9686d30c189da606711908357b30089d 446 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 323 334 - T 13-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 BMD_4225 9686d30c189da606711908357b30089d 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 324 336 6.5E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BMD_4225 9686d30c189da606711908357b30089d 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 227 241 6.5E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BMD_4225 9686d30c189da606711908357b30089d 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 256 266 6.5E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BMD_4225 9686d30c189da606711908357b30089d 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 374 390 6.5E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BMD_4225 9686d30c189da606711908357b30089d 446 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 427 444 6.5E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BMD_4225 9686d30c189da606711908357b30089d 446 SUPERFAMILY SSF53335 139 445 9.58E-65 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4326 17c39db672425a2ab52c3792d7f3cf8c 201 PIRSF PIRSF036710 1 201 3.7E-50 T 13-10-2018 IPR014617 Predicted membrane protein, Bacillus YphA type BMD_1231 24a62555e64bfa15fffe5a1d2b748851 390 PIRSF PIRSF031134 4 388 1.1E-152 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 BMD_1231 24a62555e64bfa15fffe5a1d2b748851 390 Gene3D G3DSA:3.30.200.20 1 119 8.2E-46 T 13-10-2018 BMD_1231 24a62555e64bfa15fffe5a1d2b748851 390 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 390 181.206 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 BMD_1231 24a62555e64bfa15fffe5a1d2b748851 390 SUPERFAMILY SSF56112 8 375 7.87E-87 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_1231 24a62555e64bfa15fffe5a1d2b748851 390 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 36 380 6.2E-145 T 13-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 BMD_1231 24a62555e64bfa15fffe5a1d2b748851 390 Pfam PF01636 Phosphotransferase enzyme family 35 269 5.8E-13 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase BMD_1231 24a62555e64bfa15fffe5a1d2b748851 390 Gene3D G3DSA:3.90.1200.10 120 389 1.1E-103 T 13-10-2018 BMD_0936 56149dd7ca01595213b8a2200cd68c20 349 SUPERFAMILY SSF48371 190 315 2.38E-13 T 13-10-2018 IPR016024 Armadillo-type fold BMD_0936 56149dd7ca01595213b8a2200cd68c20 349 Gene3D G3DSA:1.25.10.10 184 348 2.3E-10 T 13-10-2018 IPR011989 Armadillo-like helical BMD_2978 202e28adc21e50b452f7d7f7d79c1016 486 Pfam PF01593 Flavin containing amine oxidoreductase 11 480 4.4E-25 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_2978 202e28adc21e50b452f7d7f7d79c1016 486 Gene3D G3DSA:3.50.50.60 197 326 1.1E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2978 202e28adc21e50b452f7d7f7d79c1016 486 Gene3D G3DSA:3.50.50.60 1 97 1.1E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2978 202e28adc21e50b452f7d7f7d79c1016 486 SUPERFAMILY SSF51905 1 483 1.99E-65 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2978 202e28adc21e50b452f7d7f7d79c1016 486 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 4 484 1.1E-112 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 BMD_1131 c15f3dab42edb53681163eab594057fa 573 SUPERFAMILY SSF52518 358 561 2.95E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1131 c15f3dab42edb53681163eab594057fa 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BMD_1131 c15f3dab42edb53681163eab594057fa 573 Gene3D G3DSA:3.40.50.970 1 182 8.6E-60 T 13-10-2018 BMD_1131 c15f3dab42edb53681163eab594057fa 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 321 1.2E-34 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_1131 c15f3dab42edb53681163eab594057fa 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 381 526 1.0E-40 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_1131 c15f3dab42edb53681163eab594057fa 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 173 4.0E-46 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_1131 c15f3dab42edb53681163eab594057fa 573 SUPERFAMILY SSF52467 188 349 2.93E-43 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_1131 c15f3dab42edb53681163eab594057fa 573 SUPERFAMILY SSF52518 1 174 2.19E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1131 c15f3dab42edb53681163eab594057fa 573 Gene3D G3DSA:3.40.50.1220 183 335 1.2E-46 T 13-10-2018 BMD_1131 c15f3dab42edb53681163eab594057fa 573 Gene3D G3DSA:3.40.50.970 348 567 4.1E-58 T 13-10-2018 BMD_0150 fa33922a553cef04b5b8ee694a919a54 120 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 6 120 2.6E-53 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0150 fa33922a553cef04b5b8ee694a919a54 120 SUPERFAMILY SSF53137 7 118 2.09E-56 T 13-10-2018 BMD_0150 fa33922a553cef04b5b8ee694a919a54 120 Gene3D G3DSA:3.30.420.100 5 120 6.0E-48 T 13-10-2018 BMD_0150 fa33922a553cef04b5b8ee694a919a54 120 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 7 120 2.3E-49 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0150 fa33922a553cef04b5b8ee694a919a54 120 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 6 120 30.521 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5110 da1325fd4332e33729566ed2cef50fa1 211 Gene3D G3DSA:3.30.230.30 1 133 3.1E-54 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily BMD_5110 da1325fd4332e33729566ed2cef50fa1 211 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 1.2E-17 T 13-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal BMD_5110 da1325fd4332e33729566ed2cef50fa1 211 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 2 202 1.2E-80 T 13-10-2018 IPR015796 Impact family, bacterial/archaeal BMD_5110 da1325fd4332e33729566ed2cef50fa1 211 SUPERFAMILY SSF54211 3 131 2.35E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_5110 da1325fd4332e33729566ed2cef50fa1 211 SUPERFAMILY SSF54980 135 199 6.83E-10 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_5110 da1325fd4332e33729566ed2cef50fa1 211 Pfam PF01205 Uncharacterized protein family UPF0029 19 124 3.1E-34 T 13-10-2018 IPR001498 Impact, N-terminal BMD_5110 da1325fd4332e33729566ed2cef50fa1 211 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 79 108 - T 13-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site BMD_4573 89303b59321737f9a07f120593b52bfe 46 SUPERFAMILY SSF100985 1 44 4.84E-17 T 13-10-2018 IPR036916 Sporulation inhibitor A superfamily BMD_4573 89303b59321737f9a07f120593b52bfe 46 Pfam PF08970 Sporulation inhibitor A 1 44 7.1E-24 T 13-10-2018 IPR015064 Sporulation inhibitor A BMD_4573 89303b59321737f9a07f120593b52bfe 46 Gene3D G3DSA:1.10.287.1100 4 37 5.5E-19 T 13-10-2018 IPR036916 Sporulation inhibitor A superfamily BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 SMART SM00866 95 233 8.9E-24 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 Gene3D G3DSA:1.10.10.10 3 77 1.2E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 1.4E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 Pfam PF07702 UTRA domain 96 232 4.2E-28 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 Gene3D G3DSA:3.40.1410.10 78 239 5.5E-30 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 SUPERFAMILY SSF46785 5 83 1.17E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 3.9E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 3.9E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 SUPERFAMILY SSF64288 62 239 7.22E-38 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_4119 c8e0b8cda6a92b7b2bdc00bb2ab96acc 241 SMART SM00345 14 73 2.1E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_0015 7f94b6ef3cf1cfd06dcf52963723df43 295 SUPERFAMILY SSF51366 19 267 9.89E-70 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_0015 7f94b6ef3cf1cfd06dcf52963723df43 295 ProSitePatterns PS01235 PdxS/SNZ family signature. 206 224 - T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0015 7f94b6ef3cf1cfd06dcf52963723df43 295 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 10 295 5.6E-158 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0015 7f94b6ef3cf1cfd06dcf52963723df43 295 PIRSF PIRSF029271 1 295 1.7E-152 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0015 7f94b6ef3cf1cfd06dcf52963723df43 295 Gene3D G3DSA:3.20.20.70 1 295 7.9E-148 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0015 7f94b6ef3cf1cfd06dcf52963723df43 295 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 5 295 53.909 T 13-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0015 7f94b6ef3cf1cfd06dcf52963723df43 295 Pfam PF01680 SOR/SNZ family 9 213 9.8E-106 T 13-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_1601 6dc6007ec5acd6bcca45559618029cac 356 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 349 9.1E-96 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_1601 6dc6007ec5acd6bcca45559618029cac 356 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 239 258 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BMD_1601 6dc6007ec5acd6bcca45559618029cac 356 SMART SM01329 5 349 3.0E-165 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_1601 6dc6007ec5acd6bcca45559618029cac 356 SUPERFAMILY SSF53659 3 353 6.53E-114 T 13-10-2018 BMD_1601 6dc6007ec5acd6bcca45559618029cac 356 Gene3D G3DSA:3.40.718.10 4 356 5.4E-126 T 13-10-2018 BMD_1928 15dda8e64a273850090c567443d4b4e4 280 SUPERFAMILY SSF52821 157 278 9.43E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_1928 15dda8e64a273850090c567443d4b4e4 280 Gene3D G3DSA:3.40.250.10 1 152 2.0E-44 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_1928 15dda8e64a273850090c567443d4b4e4 280 SMART SM00450 7 133 5.7E-18 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_1928 15dda8e64a273850090c567443d4b4e4 280 SMART SM00450 157 274 6.0E-20 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_1928 15dda8e64a273850090c567443d4b4e4 280 SUPERFAMILY SSF52821 4 153 2.75E-36 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_1928 15dda8e64a273850090c567443d4b4e4 280 Gene3D G3DSA:3.40.250.10 156 280 9.4E-35 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_1928 15dda8e64a273850090c567443d4b4e4 280 Pfam PF00581 Rhodanese-like domain 160 269 3.6E-17 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_1928 15dda8e64a273850090c567443d4b4e4 280 Pfam PF00581 Rhodanese-like domain 9 129 1.1E-16 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_2890 5118e6db27d8dbd6c3ed44567033cb34 725 Pfam PF01274 Malate synthase 17 695 1.0E-171 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BMD_2890 5118e6db27d8dbd6c3ed44567033cb34 725 SUPERFAMILY SSF51645 2 720 7.46E-301 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BMD_2890 5118e6db27d8dbd6c3ed44567033cb34 725 Gene3D G3DSA:3.20.20.360 7 578 2.9E-269 T 13-10-2018 BMD_2890 5118e6db27d8dbd6c3ed44567033cb34 725 Hamap MF_00641 Malate synthase G [glcB]. 1 725 375.184 T 13-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BMD_2890 5118e6db27d8dbd6c3ed44567033cb34 725 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 720 0.0 T 13-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BMD_2890 5118e6db27d8dbd6c3ed44567033cb34 725 Gene3D G3DSA:2.170.170.11 133 262 2.9E-269 T 13-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BMD_2890 5118e6db27d8dbd6c3ed44567033cb34 725 Gene3D G3DSA:1.20.1220.12 581 725 8.7E-75 T 13-10-2018 BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 SUPERFAMILY SSF51735 4 246 2.33E-92 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 2.8E-74 T 13-10-2018 BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 Gene3D G3DSA:3.40.50.720 1 246 7.6E-92 T 13-10-2018 BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 2.4E-4 T 13-10-2018 BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.6E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.6E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.6E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.6E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.6E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0641 21f9d2d1bb141b3c70b4190f2237a50a 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 Pfam PF00467 KOW motif 129 159 2.9E-5 T 13-10-2018 IPR005824 KOW BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 SMART SM00739 123 150 0.006 T 13-10-2018 IPR005824 KOW BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 Gene3D G3DSA:3.30.70.940 1 119 1.8E-44 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 29.364 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 SMART SM00738 2 113 6.1E-51 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 6.0E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 6.0E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 6.0E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 Pfam PF02357 Transcription termination factor nusG 3 110 1.6E-28 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 Gene3D G3DSA:2.30.30.30 120 177 1.0E-23 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 SUPERFAMILY SSF82679 2 114 1.29E-40 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 177 3.1E-66 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BMD_0120 a641c0a1cdf0d34acfd73377475ba720 177 SUPERFAMILY SSF50104 121 177 1.68E-18 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 SUPERFAMILY SSF52540 355 597 6.39E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 ProSitePatterns PS00211 ABC transporters family signature. 500 514 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 Gene3D G3DSA:3.40.50.300 359 601 4.5E-90 T 13-10-2018 BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 SMART SM00382 388 574 2.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 Pfam PF00005 ABC transporter 379 528 1.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 Gene3D G3DSA:1.20.1560.10 16 348 1.8E-87 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 Pfam PF00664 ABC transporter transmembrane region 47 313 6.5E-43 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_1318 720f09fbbd1cb209a0df7b3a6c6fbb38 601 SUPERFAMILY SSF90123 32 345 1.83E-74 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_4629 192defd96de8daf72d95c04510815ee5 333 Gene3D G3DSA:3.40.50.300 19 182 1.2E-40 T 13-10-2018 BMD_4629 192defd96de8daf72d95c04510815ee5 333 SUPERFAMILY SSF52540 21 255 1.14E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4629 192defd96de8daf72d95c04510815ee5 333 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 251 331 9.0E-36 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BMD_4629 192defd96de8daf72d95c04510815ee5 333 Gene3D G3DSA:1.10.10.10 258 333 3.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4629 192defd96de8daf72d95c04510815ee5 333 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 254 327 5.6E-33 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BMD_4629 192defd96de8daf72d95c04510815ee5 333 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 6 236 2.4E-119 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 BMD_4629 192defd96de8daf72d95c04510815ee5 333 SUPERFAMILY SSF46785 257 331 1.9E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4629 192defd96de8daf72d95c04510815ee5 333 Gene3D G3DSA:1.10.8.60 183 257 2.3E-32 T 13-10-2018 BMD_4629 192defd96de8daf72d95c04510815ee5 333 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 333 175.335 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BMD_4629 192defd96de8daf72d95c04510815ee5 333 SMART SM00382 52 179 5.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4629 192defd96de8daf72d95c04510815ee5 333 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 327 5.6E-151 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BMD_5098 92a534cf88591247b292a4d211c4a5a2 293 Gene3D G3DSA:1.20.1330.10 40 239 2.2E-45 T 13-10-2018 BMD_5098 92a534cf88591247b292a4d211c4a5a2 293 Pfam PF00669 Bacterial flagellin N-terminal helical region 6 139 1.5E-22 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BMD_5098 92a534cf88591247b292a4d211c4a5a2 293 Pfam PF00700 Bacterial flagellin C-terminal helical region 211 292 1.1E-5 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BMD_5098 92a534cf88591247b292a4d211c4a5a2 293 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 184 1.1E-56 T 13-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 BMD_5098 92a534cf88591247b292a4d211c4a5a2 293 SUPERFAMILY SSF64518 1 293 3.66E-67 T 13-10-2018 BMD_3951 abdd4f1b24b083dd6d15fee259167a19 474 PIRSF PIRSF006060 5 471 1.6E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3951 abdd4f1b24b083dd6d15fee259167a19 474 Gene3D G3DSA:1.20.1740.10 17 471 9.8E-64 T 13-10-2018 BMD_3951 abdd4f1b24b083dd6d15fee259167a19 474 Pfam PF00324 Amino acid permease 25 456 2.1E-120 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_3951 abdd4f1b24b083dd6d15fee259167a19 474 ProSitePatterns PS00218 Amino acid permeases signature. 50 80 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_1317 595a461fd4a7711762ec72f90b04af92 590 SUPERFAMILY SSF90123 17 329 2.88E-80 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_1317 595a461fd4a7711762ec72f90b04af92 590 Pfam PF00664 ABC transporter transmembrane region 31 300 2.5E-53 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_1317 595a461fd4a7711762ec72f90b04af92 590 Pfam PF00005 ABC transporter 361 510 1.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1317 595a461fd4a7711762ec72f90b04af92 590 Gene3D G3DSA:3.40.50.300 336 588 4.8E-87 T 13-10-2018 BMD_1317 595a461fd4a7711762ec72f90b04af92 590 Gene3D G3DSA:1.20.1560.10 8 328 4.0E-89 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_1317 595a461fd4a7711762ec72f90b04af92 590 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1317 595a461fd4a7711762ec72f90b04af92 590 SUPERFAMILY SSF52540 338 581 4.67E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1317 595a461fd4a7711762ec72f90b04af92 590 SMART SM00382 370 571 2.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1654 ae578463079ac3958d3780c90ef0952e 400 SUPERFAMILY SSF56796 6 387 5.76E-119 T 13-10-2018 BMD_1654 ae578463079ac3958d3780c90ef0952e 400 Gene3D G3DSA:1.20.1090.10 187 389 2.4E-62 T 13-10-2018 BMD_1654 ae578463079ac3958d3780c90ef0952e 400 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 379 2.9E-119 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_1654 ae578463079ac3958d3780c90ef0952e 400 Gene3D G3DSA:3.40.50.1970 2 185 5.4E-57 T 13-10-2018 BMD_1654 ae578463079ac3958d3780c90ef0952e 400 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_4967 379269ffc24b9954639e6349c315b2ba 145 Pfam PF01934 Protein of unknown function DUF86 30 128 1.7E-21 T 13-10-2018 IPR008201 Protein of unknown function DUF86 BMD_4967 379269ffc24b9954639e6349c315b2ba 145 Gene3D G3DSA:1.20.120.580 1 144 2.7E-55 T 13-10-2018 IPR037038 Bsu32300-like superfamily BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Gene3D G3DSA:2.60.40.1180 637 686 4.9E-12 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Gene3D G3DSA:2.60.40.1760 7 249 2.2E-39 T 13-10-2018 BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Pfam PF01055 Glycosyl hydrolases family 31 245 690 5.2E-120 T 13-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Pfam PF13802 Galactose mutarotase-like 151 219 1.0E-19 T 13-10-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 SUPERFAMILY SSF51011 604 685 1.01E-19 T 13-10-2018 BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 SUPERFAMILY SSF74650 8 250 1.51E-44 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Gene3D G3DSA:3.20.20.80 251 634 1.3E-114 T 13-10-2018 BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 SUPERFAMILY SSF51445 253 599 6.65E-68 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Pfam PF16338 Domain of unknown function (DUF4968) 16 115 5.2E-7 T 13-10-2018 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Gene3D G3DSA:2.60.40.1180 687 797 2.3E-12 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_3417 66fdabf6c6518cb86ec260b51ee258c2 801 Pfam PF17137 Domain of unknown function (DUF5110) 712 771 3.5E-10 T 13-10-2018 IPR033403 Domain of unknown function DUF5110 BMD_5207 7f5c1ad07c7abe6734e537d11b81f1b2 312 SUPERFAMILY SSF53448 1 251 3.73E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_5207 7f5c1ad07c7abe6734e537d11b81f1b2 312 Gene3D G3DSA:3.90.550.10 1 234 1.3E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_5207 7f5c1ad07c7abe6734e537d11b81f1b2 312 Pfam PF00535 Glycosyl transferase family 2 5 157 1.6E-17 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_3085 b4d7099eddc83dd34b597ff19cc61968 214 Gene3D G3DSA:3.30.750.24 102 214 2.3E-24 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3085 b4d7099eddc83dd34b597ff19cc61968 214 SUPERFAMILY SSF55785 1 81 3.66E-15 T 13-10-2018 IPR035965 PAS domain superfamily BMD_3085 b4d7099eddc83dd34b597ff19cc61968 214 Gene3D G3DSA:3.30.450.20 1 101 4.4E-30 T 13-10-2018 BMD_3085 b4d7099eddc83dd34b597ff19cc61968 214 SUPERFAMILY SSF52091 102 211 5.49E-12 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3085 b4d7099eddc83dd34b597ff19cc61968 214 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 1 90 7.9E-9 T 13-10-2018 IPR000014 PAS domain BMD_3085 b4d7099eddc83dd34b597ff19cc61968 214 SMART SM00086 41 83 5.2E-4 T 13-10-2018 IPR001610 PAC motif BMD_3085 b4d7099eddc83dd34b597ff19cc61968 214 Pfam PF13426 PAS domain 1 81 9.5E-12 T 13-10-2018 IPR000014 PAS domain BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 Gene3D G3DSA:1.10.286.10 1 54 3.4E-25 T 13-10-2018 BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 9 187 7.8E-81 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 Pfam PF01227 GTP cyclohydrolase I 9 186 3.0E-80 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 114 124 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 Gene3D G3DSA:3.30.1130.10 55 188 3.2E-60 T 13-10-2018 BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 5 187 42.564 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 SUPERFAMILY SSF55620 4 187 1.48E-78 T 13-10-2018 BMD_4319 d61c39918e9f053d10a2ecec7cc0b146 188 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 65 81 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BMD_4114 b8abf743487ec5f37330ff70ba711ac4 431 SUPERFAMILY SSF63411 12 231 3.12E-21 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BMD_4114 b8abf743487ec5f37330ff70ba711ac4 431 Gene3D G3DSA:3.30.830.10 240 426 1.8E-44 T 13-10-2018 BMD_4114 b8abf743487ec5f37330ff70ba711ac4 431 Pfam PF05193 Peptidase M16 inactive domain 185 358 1.7E-24 T 13-10-2018 IPR007863 Peptidase M16, C-terminal BMD_4114 b8abf743487ec5f37330ff70ba711ac4 431 Gene3D G3DSA:3.30.830.10 6 235 3.2E-58 T 13-10-2018 BMD_4114 b8abf743487ec5f37330ff70ba711ac4 431 SUPERFAMILY SSF63411 247 415 4.67E-32 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 Gene3D G3DSA:3.30.1490.20 131 202 7.5E-162 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 SMART SM00878 336 442 1.8E-69 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 SUPERFAMILY SSF52440 1 113 1.87E-48 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 Gene3D G3DSA:3.30.470.20 87 442 7.5E-162 T 13-10-2018 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 8.6E-46 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 SUPERFAMILY SSF51246 331 444 2.04E-47 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 443 1.2E-233 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 Pfam PF02785 Biotin carboxylase C-terminal domain 336 442 7.8E-44 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 Gene3D G3DSA:3.40.50.20 1 85 1.9E-37 T 13-10-2018 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 2.2E-80 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_2463 0c0401fed28f9aa62000f077748e0e42 454 SUPERFAMILY SSF56059 83 349 1.5E-69 T 13-10-2018 BMD_5172 69d7b1c598cb896f720338fad83eb2ed 703 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 371 382 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_5172 69d7b1c598cb896f720338fad83eb2ed 703 SUPERFAMILY SSF46548 253 399 5.76E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_5172 69d7b1c598cb896f720338fad83eb2ed 703 Pfam PF13183 4Fe-4S dicluster domain 274 383 4.3E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BMD_5172 69d7b1c598cb896f720338fad83eb2ed 703 SUPERFAMILY SSF103501 7 238 3.4E-17 T 13-10-2018 IPR036197 NarG-like superfamily BMD_5172 69d7b1c598cb896f720338fad83eb2ed 703 Pfam PF02754 Cysteine-rich domain 459 537 2.2E-5 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_5172 69d7b1c598cb896f720338fad83eb2ed 703 Pfam PF02754 Cysteine-rich domain 581 668 4.9E-18 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 40 297 1.1E-62 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 SUPERFAMILY SSF51419 30 299 1.02E-78 T 13-10-2018 IPR029066 PLP-binding barrel BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 19 431 40.26 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 Gene3D G3DSA:3.20.20.10 38 297 8.5E-157 T 13-10-2018 IPR029066 PLP-binding barrel BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 198 211 1.5E-14 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 83 95 1.5E-14 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 287 306 1.5E-14 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 388 401 1.5E-14 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 Gene3D G3DSA:2.40.37.10 17 427 8.5E-157 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 SUPERFAMILY SSF50621 278 432 8.16E-55 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 9 431 3.2E-154 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 35 388 7.1E-19 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01181 Diaminopimelate decarboxylase signature 81 98 2.2E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01181 Diaminopimelate decarboxylase signature 398 420 2.2E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01181 Diaminopimelate decarboxylase signature 316 334 2.2E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_2308 a656c255bb1b64a62c9739f04bcdcdfd 442 PRINTS PR01181 Diaminopimelate decarboxylase signature 170 179 2.2E-27 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_0656 dfc16078bd4bd15b72e8e0be2dd91712 615 Pfam PF13537 Glutamine amidotransferase domain 48 169 5.5E-44 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BMD_0656 dfc16078bd4bd15b72e8e0be2dd91712 615 PIRSF PIRSF001589 1 608 1.6E-140 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BMD_0656 dfc16078bd4bd15b72e8e0be2dd91712 615 Gene3D G3DSA:3.60.20.10 2 182 1.4E-60 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0656 dfc16078bd4bd15b72e8e0be2dd91712 615 SUPERFAMILY SSF52402 231 577 4.19E-72 T 13-10-2018 BMD_0656 dfc16078bd4bd15b72e8e0be2dd91712 615 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 534 7.5E-165 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BMD_0656 dfc16078bd4bd15b72e8e0be2dd91712 615 Pfam PF00733 Asparagine synthase 243 579 1.2E-93 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 BMD_0656 dfc16078bd4bd15b72e8e0be2dd91712 615 SUPERFAMILY SSF56235 1 226 1.54E-62 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 3 242 3.3E-82 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 Pfam PF00588 SpoU rRNA Methylase family 96 236 2.3E-38 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 SUPERFAMILY SSF75217 67 243 2.16E-49 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 Gene3D G3DSA:3.30.1330.30 1 73 9.1E-12 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 SMART SM00967 5 79 9.3E-22 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 Gene3D G3DSA:3.40.1280.10 74 243 2.4E-56 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 SUPERFAMILY SSF55315 3 76 4.59E-18 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_0115 52e2cc05a491a8b61f331c12b339bc01 247 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 79 3.0E-22 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BMD_4155 1116747fef078ce64c1d5a9566f98d39 164 Gene3D G3DSA:3.30.1330.200 5 163 9.0E-47 T 13-10-2018 IPR038592 CheD-like superfamily BMD_4155 1116747fef078ce64c1d5a9566f98d39 164 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 4 160 25.694 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 BMD_4155 1116747fef078ce64c1d5a9566f98d39 164 Pfam PF03975 CheD chemotactic sensory transduction 51 156 4.5E-32 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 BMD_4155 1116747fef078ce64c1d5a9566f98d39 164 SUPERFAMILY SSF64438 7 162 1.56E-44 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic BMD_0994 2ae6c367cfd5d06d25d017baf3f0d3ad 75 Pfam PF12645 Helix-turn-helix domain 5 61 3.8E-8 T 13-10-2018 IPR024760 Helix-turn-helix, conjugative transposon-like BMD_0994 2ae6c367cfd5d06d25d017baf3f0d3ad 75 Gene3D G3DSA:1.10.1740.10 2 71 2.7E-6 T 13-10-2018 BMD_0994 2ae6c367cfd5d06d25d017baf3f0d3ad 75 SUPERFAMILY SSF88946 3 69 7.65E-7 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_4005 712cd1f6374cd3fdfebce8e9c2637d49 208 SUPERFAMILY SSF52218 1 207 1.68E-51 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_4005 712cd1f6374cd3fdfebce8e9c2637d49 208 Gene3D G3DSA:3.40.50.360 1 208 9.1E-63 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_4005 712cd1f6374cd3fdfebce8e9c2637d49 208 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 208 30.455 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 BMD_4005 712cd1f6374cd3fdfebce8e9c2637d49 208 Pfam PF02525 Flavodoxin-like fold 3 203 2.0E-45 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_0559 73d49fcea3ace465b6f6c377668a8cbd 206 Gene3D G3DSA:3.40.50.720 1 205 3.6E-35 T 13-10-2018 BMD_0559 73d49fcea3ace465b6f6c377668a8cbd 206 SUPERFAMILY SSF51735 1 195 1.53E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0559 73d49fcea3ace465b6f6c377668a8cbd 206 Pfam PF13460 NAD(P)H-binding 7 189 3.1E-32 T 13-10-2018 IPR016040 NAD(P)-binding domain BMD_1496 0f18f240aa49120b79e005a29451a803 418 Pfam PF00245 Alkaline phosphatase 40 342 1.4E-83 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1496 0f18f240aa49120b79e005a29451a803 418 SUPERFAMILY SSF53649 26 417 2.78E-117 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_1496 0f18f240aa49120b79e005a29451a803 418 PRINTS PR00113 Alkaline phosphatase signature 90 105 1.8E-42 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1496 0f18f240aa49120b79e005a29451a803 418 PRINTS PR00113 Alkaline phosphatase signature 127 147 1.8E-42 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1496 0f18f240aa49120b79e005a29451a803 418 PRINTS PR00113 Alkaline phosphatase signature 172 182 1.8E-42 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1496 0f18f240aa49120b79e005a29451a803 418 PRINTS PR00113 Alkaline phosphatase signature 264 293 1.8E-42 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1496 0f18f240aa49120b79e005a29451a803 418 PRINTS PR00113 Alkaline phosphatase signature 40 60 1.8E-42 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1496 0f18f240aa49120b79e005a29451a803 418 SMART SM00098 41 418 5.7E-80 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1496 0f18f240aa49120b79e005a29451a803 418 Gene3D G3DSA:3.40.720.10 10 418 4.6E-122 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_1496 0f18f240aa49120b79e005a29451a803 418 ProSitePatterns PS00123 Alkaline phosphatase active site. 90 98 - T 13-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_0362 c741f55393569f54c66ec93962221ade 310 SUPERFAMILY SSF51735 98 275 9.48E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0362 c741f55393569f54c66ec93962221ade 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 104 275 1.8E-46 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BMD_0362 c741f55393569f54c66ec93962221ade 310 Gene3D G3DSA:3.40.50.720 96 279 1.4E-79 T 13-10-2018 BMD_0362 c741f55393569f54c66ec93962221ade 310 Gene3D G3DSA:3.40.50.720 31 297 1.4E-79 T 13-10-2018 BMD_0104 0f74f88f142cb8c24eaaead6d70ef20f 357 Hamap MF_00602 Protein-arginine kinase [mcsB]. 13 351 39.653 T 13-10-2018 IPR023660 Protein arginine kinase GO:0016775 BMD_0104 0f74f88f142cb8c24eaaead6d70ef20f 357 Gene3D G3DSA:3.30.590.10 10 264 1.1E-76 T 13-10-2018 BMD_0104 0f74f88f142cb8c24eaaead6d70ef20f 357 SUPERFAMILY SSF55931 6 269 4.77E-89 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BMD_0104 0f74f88f142cb8c24eaaead6d70ef20f 357 Pfam PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain 53 254 1.3E-76 T 13-10-2018 IPR022414 ATP:guanido phosphotransferase, catalytic domain GO:0016301|GO:0016772 Reactome: R-HSA-71288 BMD_0104 0f74f88f142cb8c24eaaead6d70ef20f 357 ProSitePatterns PS00112 Phosphagen kinase active site signature. 168 174 - T 13-10-2018 IPR022415 ATP:guanido phosphotransferase active site GO:0016301|GO:0016772 Reactome: R-HSA-71288 BMD_0308 1c94d19761ea332bdd54181870047995 406 PRINTS PR01035 Tetracycline resistance protein signature 114 135 1.6E-10 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_0308 1c94d19761ea332bdd54181870047995 406 PRINTS PR01035 Tetracycline resistance protein signature 174 194 1.6E-10 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_0308 1c94d19761ea332bdd54181870047995 406 PRINTS PR01035 Tetracycline resistance protein signature 30 46 1.6E-10 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_0308 1c94d19761ea332bdd54181870047995 406 PRINTS PR01035 Tetracycline resistance protein signature 287 308 1.6E-10 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_0308 1c94d19761ea332bdd54181870047995 406 PRINTS PR01035 Tetracycline resistance protein signature 87 111 1.6E-10 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_0308 1c94d19761ea332bdd54181870047995 406 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 18 397 1.8E-99 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 BMD_0308 1c94d19761ea332bdd54181870047995 406 SUPERFAMILY SSF103473 11 404 1.44E-64 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0308 1c94d19761ea332bdd54181870047995 406 Pfam PF07690 Major Facilitator Superfamily 29 368 2.7E-47 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_0308 1c94d19761ea332bdd54181870047995 406 Gene3D G3DSA:1.20.1720.10 20 399 2.3E-101 T 13-10-2018 BMD_0671 c2908b2e790301370ce0466f420f53a5 286 SUPERFAMILY SSF82549 1 283 1.39E-88 T 13-10-2018 BMD_0671 c2908b2e790301370ce0466f420f53a5 286 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 281 2.3E-91 T 13-10-2018 IPR003797 DegV BMD_0671 c2908b2e790301370ce0466f420f53a5 286 Gene3D G3DSA:2.20.28.50 28 62 9.3E-43 T 13-10-2018 BMD_0671 c2908b2e790301370ce0466f420f53a5 286 Gene3D G3DSA:3.40.50.10440 5 138 9.3E-43 T 13-10-2018 BMD_0671 c2908b2e790301370ce0466f420f53a5 286 Gene3D G3DSA:3.30.1180.10 156 286 5.9E-49 T 13-10-2018 BMD_0671 c2908b2e790301370ce0466f420f53a5 286 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 282 2.3E-81 T 13-10-2018 IPR003797 DegV BMD_3560 c4e28470b04c10da6cb6236eb1301019 59 ProDom PD052450 H SPORE ACID-SOLUBLE SMALL SASP SPORULATION SMALL PROTEIN-RELATED SOLUBLE RBL04815 1 58 2.0E-16 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_3560 c4e28470b04c10da6cb6236eb1301019 59 Pfam PF08141 Small acid-soluble spore protein H family 2 58 2.7E-23 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_3560 c4e28470b04c10da6cb6236eb1301019 59 Hamap MF_00667 Small, acid-soluble spore protein H [sspH]. 1 59 17.918 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_3560 c4e28470b04c10da6cb6236eb1301019 59 TIGRFAM TIGR02861 SASP_H: small acid-soluble spore protein, H-type 2 58 1.6E-23 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_3531 fe8a2ca78a0ca2077cd13f124948aea1 232 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 195 7.5E-45 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal BMD_3531 fe8a2ca78a0ca2077cd13f124948aea1 232 SUPERFAMILY SSF53639 3 222 5.1E-67 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BMD_3531 fe8a2ca78a0ca2077cd13f124948aea1 232 Gene3D G3DSA:3.40.225.10 1 230 7.9E-60 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BMD_3531 fe8a2ca78a0ca2077cd13f124948aea1 232 SMART SM01007 7 197 1.5E-63 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal BMD_3178 9ae7bb5f215d748510e819f9644aa67c 274 TIGRFAM TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family 1 273 1.5E-93 T 13-10-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 BMD_3178 9ae7bb5f215d748510e819f9644aa67c 274 Gene3D G3DSA:3.40.50.1000 25 274 8.4E-92 T 13-10-2018 IPR023214 HAD superfamily BMD_3178 9ae7bb5f215d748510e819f9644aa67c 274 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 20 246 6.2E-50 T 13-10-2018 IPR005519 Acid phosphatase, class B-like BMD_3178 9ae7bb5f215d748510e819f9644aa67c 274 PIRSF PIRSF019271 1 274 1.6E-104 T 13-10-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 BMD_3178 9ae7bb5f215d748510e819f9644aa67c 274 SUPERFAMILY SSF56784 59 252 4.43E-47 T 13-10-2018 IPR036412 HAD-like superfamily BMD_0413 fa3cde9fb03493207f43c742cc006770 263 Pfam PF06182 ABC-2 family transporter protein 31 262 2.0E-18 T 13-10-2018 IPR010390 Protein of unknown function DUF990 BMD_0379 cc442630de0cb1b256414f9fbd92eab3 394 Pfam PF07690 Major Facilitator Superfamily 14 231 5.1E-20 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_0379 cc442630de0cb1b256414f9fbd92eab3 394 Gene3D G3DSA:1.20.1250.20 6 187 9.9E-25 T 13-10-2018 BMD_0379 cc442630de0cb1b256414f9fbd92eab3 394 Gene3D G3DSA:1.20.1250.20 202 392 2.1E-20 T 13-10-2018 BMD_0379 cc442630de0cb1b256414f9fbd92eab3 394 SUPERFAMILY SSF103473 6 384 1.7E-51 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0455 a5fcb6ce45fc2caabc4a0e421a3f419e 201 Pfam PF09335 SNARE associated Golgi protein 30 156 6.9E-23 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_4373 09a1c64ddcc17adcf10d2cded5f46328 343 PIRSF PIRSF011570 1 334 2.7E-164 T 13-10-2018 IPR010894 Stage V sporulation AD BMD_4373 09a1c64ddcc17adcf10d2cded5f46328 343 TIGRFAM TIGR02845 spore_V_AD: stage V sporulation protein AD 6 332 2.1E-161 T 13-10-2018 IPR010894 Stage V sporulation AD BMD_4373 09a1c64ddcc17adcf10d2cded5f46328 343 Pfam PF07451 Stage V sporulation protein AD (SpoVAD) 5 332 1.0E-151 T 13-10-2018 IPR010894 Stage V sporulation AD BMD_4373 09a1c64ddcc17adcf10d2cded5f46328 343 SUPERFAMILY SSF53901 56 309 7.95E-17 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4373 09a1c64ddcc17adcf10d2cded5f46328 343 Gene3D G3DSA:3.40.47.40 1 342 2.3E-154 T 13-10-2018 IPR038369 Stage V sporulation AD superfamily BMD_1832 9d590a71e46cb123e918b8fe8d5fd7c3 512 PIRSF PIRSF002741 1 510 1.4E-88 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_1832 9d590a71e46cb123e918b8fe8d5fd7c3 512 Gene3D G3DSA:3.40.190.10 18 278 4.4E-68 T 13-10-2018 BMD_1832 9d590a71e46cb123e918b8fe8d5fd7c3 512 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 87 109 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site BMD_1832 9d590a71e46cb123e918b8fe8d5fd7c3 512 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 429 1.2E-78 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_1832 9d590a71e46cb123e918b8fe8d5fd7c3 512 SUPERFAMILY SSF53850 35 506 2.65E-109 T 13-10-2018 BMD_1832 9d590a71e46cb123e918b8fe8d5fd7c3 512 Gene3D G3DSA:3.10.105.10 279 483 1.0E-29 T 13-10-2018 BMD_1680 a9cc350f78830aaabe1a180c6a9f2488 297 Pfam PF03466 LysR substrate binding domain 88 287 5.7E-37 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1680 a9cc350f78830aaabe1a180c6a9f2488 297 SUPERFAMILY SSF46785 2 99 5.99E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1680 a9cc350f78830aaabe1a180c6a9f2488 297 Gene3D G3DSA:3.40.190.290 90 294 1.3E-35 T 13-10-2018 BMD_1680 a9cc350f78830aaabe1a180c6a9f2488 297 Gene3D G3DSA:1.10.10.10 1 89 2.3E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1680 a9cc350f78830aaabe1a180c6a9f2488 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.0E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1680 a9cc350f78830aaabe1a180c6a9f2488 297 SUPERFAMILY SSF53850 88 289 6.11E-32 T 13-10-2018 BMD_1265 1585de96335775f8fb51145cbdf2d54c 234 Gene3D G3DSA:3.10.350.10 22 88 2.7E-15 T 13-10-2018 IPR036779 LysM domain superfamily BMD_1265 1585de96335775f8fb51145cbdf2d54c 234 Pfam PF01476 LysM domain 32 74 5.5E-12 T 13-10-2018 IPR018392 LysM domain BMD_1265 1585de96335775f8fb51145cbdf2d54c 234 Pfam PF07486 Cell Wall Hydrolase 131 232 2.9E-23 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_1265 1585de96335775f8fb51145cbdf2d54c 234 SMART SM00257 31 74 1.8E-11 T 13-10-2018 IPR018392 LysM domain BMD_1265 1585de96335775f8fb51145cbdf2d54c 234 Gene3D G3DSA:2.40.10.420 199 234 1.8E-14 T 13-10-2018 BMD_1265 1585de96335775f8fb51145cbdf2d54c 234 SUPERFAMILY SSF54106 31 74 1.44E-10 T 13-10-2018 BMD_1265 1585de96335775f8fb51145cbdf2d54c 234 Gene3D G3DSA:1.10.10.2520 115 197 4.0E-27 T 13-10-2018 BMD_2926 410f98dc04ca02661539df4467b405ad 953 SUPERFAMILY SSF52518 151 531 2.61E-73 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_2926 410f98dc04ca02661539df4467b405ad 953 PIRSF PIRSF000157 2 943 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BMD_2926 410f98dc04ca02661539df4467b405ad 953 Hamap MF_01169 2-oxoglutarate dehydrogenase E1 component [odhA]. 2 943 22.951 T 13-10-2018 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BMD_2926 410f98dc04ca02661539df4467b405ad 953 SMART SM00861 596 792 3.0E-42 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_2926 410f98dc04ca02661539df4467b405ad 953 Gene3D G3DSA:3.40.50.11610 732 939 1.2E-152 T 13-10-2018 BMD_2926 410f98dc04ca02661539df4467b405ad 953 Pfam PF02779 Transketolase, pyrimidine binding domain 595 792 5.6E-53 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_2926 410f98dc04ca02661539df4467b405ad 953 Gene3D G3DSA:3.40.50.970 154 536 6.3E-134 T 13-10-2018 BMD_2926 410f98dc04ca02661539df4467b405ad 953 Gene3D G3DSA:3.40.50.12470 554 814 1.2E-152 T 13-10-2018 BMD_2926 410f98dc04ca02661539df4467b405ad 953 SUPERFAMILY SSF52518 578 799 5.69E-41 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_2926 410f98dc04ca02661539df4467b405ad 953 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 796 941 9.4E-42 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BMD_2926 410f98dc04ca02661539df4467b405ad 953 Pfam PF00676 Dehydrogenase E1 component 222 531 2.4E-72 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 BMD_2926 410f98dc04ca02661539df4467b405ad 953 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 16 941 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BMD_1117 9a10ddecb11bb2057ca5dfcfd50cac27 333 SUPERFAMILY SSF53448 5 213 2.57E-48 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1117 9a10ddecb11bb2057ca5dfcfd50cac27 333 Pfam PF00535 Glycosyl transferase family 2 5 154 1.1E-30 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_1117 9a10ddecb11bb2057ca5dfcfd50cac27 333 Gene3D G3DSA:3.90.550.10 2 187 3.8E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2478 c3ed267bb6eeb8b56bf2109c6fe11a23 194 Pfam PF02525 Flavodoxin-like fold 1 189 2.6E-50 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_2478 c3ed267bb6eeb8b56bf2109c6fe11a23 194 SUPERFAMILY SSF52218 1 194 9.67E-56 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2478 c3ed267bb6eeb8b56bf2109c6fe11a23 194 Gene3D G3DSA:3.40.50.360 1 194 3.6E-55 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_0166 c1a5488ec6229b2651e328670febadea 145 SUPERFAMILY SSF52161 5 143 1.96E-58 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0166 c1a5488ec6229b2651e328670febadea 145 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 1.9E-64 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0166 c1a5488ec6229b2651e328670febadea 145 ProSitePatterns PS00783 Ribosomal protein L13 signature. 106 128 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 BMD_0166 c1a5488ec6229b2651e328670febadea 145 PIRSF PIRSF002181 1 143 6.1E-50 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BMD_0166 c1a5488ec6229b2651e328670febadea 145 Pfam PF00572 Ribosomal protein L13 15 139 1.4E-56 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BMD_0166 c1a5488ec6229b2651e328670febadea 145 Gene3D G3DSA:3.90.1180.10 1 143 1.2E-60 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0166 c1a5488ec6229b2651e328670febadea 145 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 144 27.308 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 Gene3D G3DSA:3.30.479.20 155 273 8.3E-44 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 293 4.5E-119 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 SUPERFAMILY SSF54713 151 292 2.22E-53 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 Gene3D G3DSA:1.10.286.20 193 239 8.3E-44 T 13-10-2018 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 Gene3D G3DSA:1.10.8.10 1 55 1.6E-28 T 13-10-2018 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 Gene3D G3DSA:3.30.479.20 56 146 1.1E-23 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 SUPERFAMILY SSF54713 55 143 2.35E-22 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 Pfam PF00889 Elongation factor TS 70 274 6.4E-76 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 Hamap MF_00050 Elongation factor Ts [tsf]. 1 291 82.418 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_4151 c3b7612b976cf17bfe3bfe35e3504154 293 SUPERFAMILY SSF46934 3 54 1.99E-21 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 BMD_1308 1348360130dc9b2a044e0cfa57c3bb8b 151 Gene3D G3DSA:3.10.580.10 1 143 5.9E-52 T 13-10-2018 BMD_1308 1348360130dc9b2a044e0cfa57c3bb8b 151 SUPERFAMILY SSF54631 15 139 6.71E-27 T 13-10-2018 BMD_1308 1348360130dc9b2a044e0cfa57c3bb8b 151 Pfam PF00571 CBS domain 86 138 1.2E-5 T 13-10-2018 IPR000644 CBS domain BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 151 306 1.9E-26 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 147 1.6E-43 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 Gene3D G3DSA:3.90.110.10 150 315 1.1E-58 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 SUPERFAMILY SSF51735 7 147 1.01E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 SUPERFAMILY SSF56327 149 309 1.73E-50 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 PRINTS PR00086 L-lactate dehydrogenase signature 7 31 8.9E-29 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 PRINTS PR00086 L-lactate dehydrogenase signature 145 163 8.9E-29 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 PRINTS PR00086 L-lactate dehydrogenase signature 121 141 8.9E-29 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 8.9E-29 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 PRINTS PR00086 L-lactate dehydrogenase signature 175 188 8.9E-29 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 PIRSF PIRSF000102 2 318 4.7E-104 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 5 311 1.3E-150 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 Hamap MF_00487 Malate dehydrogenase [mdh]. 6 312 46.174 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BMD_3656 f0d80fcc00e9f16f945e5444498f56f3 318 Gene3D G3DSA:3.40.50.720 1 149 1.2E-59 T 13-10-2018 BMD_4535 6939e746522761345f4b3db4d0b625fa 132 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 93 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BMD_4535 6939e746522761345f4b3db4d0b625fa 132 Gene3D G3DSA:3.40.140.10 1 132 1.1E-57 T 13-10-2018 BMD_4535 6939e746522761345f4b3db4d0b625fa 132 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 6 129 2.7E-46 T 13-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 BMD_4535 6939e746522761345f4b3db4d0b625fa 132 SUPERFAMILY SSF53927 4 130 4.68E-48 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BMD_4535 6939e746522761345f4b3db4d0b625fa 132 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 6 103 3.3E-17 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BMD_2021 27b5a042a17670263b77cd7f695db6c4 273 Gene3D G3DSA:3.40.190.10 41 263 2.3E-80 T 13-10-2018 BMD_2021 27b5a042a17670263b77cd7f695db6c4 273 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 264 3.3E-53 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_2021 27b5a042a17670263b77cd7f695db6c4 273 Gene3D G3DSA:3.40.190.10 107 227 2.3E-80 T 13-10-2018 BMD_2021 27b5a042a17670263b77cd7f695db6c4 273 SMART SM00062 38 265 2.5E-65 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_2021 27b5a042a17670263b77cd7f695db6c4 273 SUPERFAMILY SSF53850 1 265 6.48E-53 T 13-10-2018 BMD_3012 662352f64b5a553c8d41b496f6640f37 233 Pfam PF05908 Poly-gamma-glutamate hydrolase 35 223 1.5E-67 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase BMD_3012 662352f64b5a553c8d41b496f6640f37 233 Gene3D G3DSA:3.40.630.100 29 233 1.6E-62 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily BMD_1104 6ddff407d5af3abfa32f4960b597b0b8 185 Pfam PF04982 HPP family 67 181 1.8E-29 T 13-10-2018 IPR007065 HPP BMD_2913 5108475faba7843f8a5452ff9878815b 291 SUPERFAMILY SSF52091 178 286 4.12E-15 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2913 5108475faba7843f8a5452ff9878815b 291 Gene3D G3DSA:3.30.750.24 175 291 1.7E-33 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2913 5108475faba7843f8a5452ff9878815b 291 Pfam PF01740 STAS domain 185 282 2.8E-13 T 13-10-2018 IPR002645 STAS domain BMD_3676 0f6cbad07dfd9cb45874f5c68f143596 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 5 18 6.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3676 0f6cbad07dfd9cb45874f5c68f143596 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 48 6.1E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3676 0f6cbad07dfd9cb45874f5c68f143596 185 SUPERFAMILY SSF46689 2 66 6.16E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3676 0f6cbad07dfd9cb45874f5c68f143596 185 Gene3D G3DSA:1.10.357.10 48 185 3.6E-13 T 13-10-2018 BMD_3676 0f6cbad07dfd9cb45874f5c68f143596 185 SUPERFAMILY SSF48498 95 182 1.91E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_3676 0f6cbad07dfd9cb45874f5c68f143596 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 49 2.3E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3676 0f6cbad07dfd9cb45874f5c68f143596 185 Gene3D G3DSA:1.10.10.60 1 47 2.1E-10 T 13-10-2018 BMD_3767 dc5883b9c586b23cb29735ff5e0886c9 69 Gene3D G3DSA:1.10.8.910 10 68 1.6E-30 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_3767 dc5883b9c586b23cb29735ff5e0886c9 69 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 25 34 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_3767 dc5883b9c586b23cb29735ff5e0886c9 69 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 43 57 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_3767 dc5883b9c586b23cb29735ff5e0886c9 69 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 10 64 2.0E-21 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_4437 1b6ab395e4638f4bf342d1f71fc669a5 426 Gene3D G3DSA:2.30.42.10 133 211 5.3E-15 T 13-10-2018 BMD_4437 1b6ab395e4638f4bf342d1f71fc669a5 426 SUPERFAMILY SSF50494 343 409 7.47E-7 T 13-10-2018 IPR009003 Peptidase S1, PA clan BMD_4437 1b6ab395e4638f4bf342d1f71fc669a5 426 SMART SM00228 109 185 2.5E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_4437 1b6ab395e4638f4bf342d1f71fc669a5 426 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 107 181 2.0E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_4437 1b6ab395e4638f4bf342d1f71fc669a5 426 TIGRFAM TIGR02860 spore_IV_B: stage IV sporulation protein B 3 415 2.4E-176 T 13-10-2018 IPR014219 Peptidase S55, sporulation stage IV, protein B BMD_4437 1b6ab395e4638f4bf342d1f71fc669a5 426 SUPERFAMILY SSF50156 114 194 2.63E-11 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 BMD_4437 1b6ab395e4638f4bf342d1f71fc669a5 426 Pfam PF05580 SpoIVB peptidase S55 202 410 1.2E-87 T 13-10-2018 IPR008763 Peptidase S55, SpoIVB BMD_2826 22adbbcecfb292fdc94d5c5fe5d5999b 290 Pfam PF01435 Peptidase family M48 87 289 5.7E-36 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BMD_2826 22adbbcecfb292fdc94d5c5fe5d5999b 290 Gene3D G3DSA:3.30.2010.10 71 165 2.0E-27 T 13-10-2018 BMD_2226 0cd8fe9e7b51229fd3707b0da1228670 299 SMART SM00382 26 203 9.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2226 0cd8fe9e7b51229fd3707b0da1228670 299 Gene3D G3DSA:3.40.50.300 1 226 1.7E-48 T 13-10-2018 BMD_2226 0cd8fe9e7b51229fd3707b0da1228670 299 Pfam PF00005 ABC transporter 17 154 2.5E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2226 0cd8fe9e7b51229fd3707b0da1228670 299 SUPERFAMILY SSF52540 2 218 3.32E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1046 df23cb96ab0a50fbde5d8c0c225c3833 326 SUPERFAMILY SSF51735 2 320 9.45E-98 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1046 df23cb96ab0a50fbde5d8c0c225c3833 326 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 1 322 3.2E-135 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 BMD_1046 df23cb96ab0a50fbde5d8c0c225c3833 326 Gene3D G3DSA:3.40.50.720 2 263 1.2E-125 T 13-10-2018 BMD_1046 df23cb96ab0a50fbde5d8c0c225c3833 326 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 251 4.7E-59 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BMD_1046 df23cb96ab0a50fbde5d8c0c225c3833 326 Gene3D G3DSA:3.90.25.10 183 318 1.2E-125 T 13-10-2018 BMD_0078 520bd35a420b6cc5ec5a193760627224 101 PIRSF PIRSF011576 1 101 3.7E-52 T 13-10-2018 IPR012504 Sporulation protein YabP BMD_0078 520bd35a420b6cc5ec5a193760627224 101 Pfam PF07873 YabP family 18 83 1.3E-19 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC BMD_0078 520bd35a420b6cc5ec5a193760627224 101 Gene3D G3DSA:2.60.40.2000 26 83 3.5E-23 T 13-10-2018 IPR038705 YabP superfamily BMD_0078 520bd35a420b6cc5ec5a193760627224 101 TIGRFAM TIGR02892 spore_yabP: sporulation protein YabP 18 101 4.9E-34 T 13-10-2018 IPR012504 Sporulation protein YabP BMD_0078 520bd35a420b6cc5ec5a193760627224 101 ProDom PD067726 YABP B.SUBTILIS PRECURSOR UNCHARACTERIZED BH0074 SIGNAL CPE2477 PROTEIN 18 101 4.0E-36 T 13-10-2018 IPR012504 Sporulation protein YabP BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 1.9E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 1.9E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 1.9E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 1.9E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 SUPERFAMILY SSF51569 4 290 4.19E-105 T 13-10-2018 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 134 164 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 2 288 65.385 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 SMART SM01130 2 290 1.4E-141 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 Gene3D G3DSA:3.20.20.70 1 289 7.9E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 PIRSF PIRSF001365 1 294 1.1E-99 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 6 287 9.0E-113 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BMD_1694 9e9aaafe209300b1dccb7434950b9627 295 Pfam PF00701 Dihydrodipicolinate synthetase family 3 288 8.9E-112 T 13-10-2018 IPR002220 DapA-like GO:0016829 BMD_2450 85a2c08a0ea11ae80ac02cc998aa2978 264 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 162 172 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site BMD_2450 85a2c08a0ea11ae80ac02cc998aa2978 264 Gene3D G3DSA:1.20.1080.10 4 263 2.6E-84 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BMD_2450 85a2c08a0ea11ae80ac02cc998aa2978 264 Pfam PF01226 Formate/nitrite transporter 10 249 3.2E-78 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 BMD_2450 85a2c08a0ea11ae80ac02cc998aa2978 264 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 77 86 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site BMD_2450 85a2c08a0ea11ae80ac02cc998aa2978 264 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 20 252 2.6E-77 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 BMD_3942 ca77558a81df61f1bb40656dda545d06 164 Pfam PF00583 Acetyltransferase (GNAT) family 47 140 2.8E-10 T 13-10-2018 IPR000182 GNAT domain BMD_3942 ca77558a81df61f1bb40656dda545d06 164 Gene3D G3DSA:3.40.630.30 12 164 3.5E-21 T 13-10-2018 BMD_3942 ca77558a81df61f1bb40656dda545d06 164 SUPERFAMILY SSF55729 10 148 5.75E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2571 f6fa448555c3ca5a3ebbe8979e404590 135 Gene3D G3DSA:1.10.10.10 3 134 8.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2571 f6fa448555c3ca5a3ebbe8979e404590 135 Pfam PF01047 MarR family 25 83 1.0E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2571 f6fa448555c3ca5a3ebbe8979e404590 135 SUPERFAMILY SSF46785 22 131 1.15E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2571 f6fa448555c3ca5a3ebbe8979e404590 135 SMART SM00347 18 118 9.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.464 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.6E-32 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 PIRSF PIRSF002134 1 121 3.6E-41 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 Gene3D G3DSA:4.10.910.10 72 121 2.5E-24 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 SUPERFAMILY SSF46946 2 114 1.28E-44 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 2.9E-52 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0158 145a7134f9c9f1012374ac26109d7785 121 Gene3D G3DSA:1.10.8.50 1 71 7.0E-29 T 13-10-2018 BMD_4648 a6a072a5963612c7fd1ebe9469ece6b7 489 Gene3D G3DSA:2.40.50.140 32 124 3.7E-25 T 13-10-2018 BMD_4648 a6a072a5963612c7fd1ebe9469ece6b7 489 Pfam PF10150 Ribonuclease E/G family 124 383 4.4E-80 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 BMD_4648 a6a072a5963612c7fd1ebe9469ece6b7 489 SUPERFAMILY SSF50249 40 118 3.16E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4648 a6a072a5963612c7fd1ebe9469ece6b7 489 Pfam PF00575 S1 RNA binding domain 39 87 1.4E-4 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4648 a6a072a5963612c7fd1ebe9469ece6b7 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 16 416 5.3E-114 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 BMD_4648 a6a072a5963612c7fd1ebe9469ece6b7 489 SMART SM00316 38 119 2.4E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_2925 137756e6f36e5d54640350d2f211df26 431 Pfam PF00364 Biotin-requiring enzyme 3 75 5.6E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_2925 137756e6f36e5d54640350d2f211df26 431 SUPERFAMILY SSF51230 3 94 7.98E-28 T 13-10-2018 IPR011053 Single hybrid motif BMD_2925 137756e6f36e5d54640350d2f211df26 431 SUPERFAMILY SSF52777 200 429 6.67E-86 T 13-10-2018 BMD_2925 137756e6f36e5d54640350d2f211df26 431 Gene3D G3DSA:4.10.320.10 129 169 3.0E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_2925 137756e6f36e5d54640350d2f211df26 431 Gene3D G3DSA:2.40.50.100 1 101 1.7E-27 T 13-10-2018 BMD_2925 137756e6f36e5d54640350d2f211df26 431 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 200 429 1.6E-78 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BMD_2925 137756e6f36e5d54640350d2f211df26 431 Pfam PF02817 e3 binding domain 130 163 2.7E-10 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BMD_2925 137756e6f36e5d54640350d2f211df26 431 SUPERFAMILY SSF47005 124 168 1.11E-8 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BMD_2925 137756e6f36e5d54640350d2f211df26 431 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 26 55 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BMD_2925 137756e6f36e5d54640350d2f211df26 431 Gene3D G3DSA:3.30.559.10 199 430 5.6E-89 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BMD_2925 137756e6f36e5d54640350d2f211df26 431 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 430 3.9E-176 T 13-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BMD_2329 faa3f7e3d2a6b0a7a60ffceb6b3f5886 82 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 7 68 1.6E-21 T 13-10-2018 BMD_2329 faa3f7e3d2a6b0a7a60ffceb6b3f5886 82 SUPERFAMILY SSF54862 4 72 1.33E-12 T 13-10-2018 BMD_2329 faa3f7e3d2a6b0a7a60ffceb6b3f5886 82 Gene3D G3DSA:3.30.70.20 2 82 2.6E-34 T 13-10-2018 BMD_2329 faa3f7e3d2a6b0a7a60ffceb6b3f5886 82 PRINTS PR00352 3Fe-4S ferredoxin signature 55 67 1.6E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_2329 faa3f7e3d2a6b0a7a60ffceb6b3f5886 82 PRINTS PR00352 3Fe-4S ferredoxin signature 7 18 1.6E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_2329 faa3f7e3d2a6b0a7a60ffceb6b3f5886 82 PRINTS PR00352 3Fe-4S ferredoxin signature 18 28 1.6E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_3759 19a7b777b0f8f3a417db34bd9da5928a 569 SMART SM00642 28 428 7.1E-140 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_3759 19a7b777b0f8f3a417db34bd9da5928a 569 SUPERFAMILY SSF51445 18 484 4.42E-145 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_3759 19a7b777b0f8f3a417db34bd9da5928a 569 Gene3D G3DSA:2.60.40.1180 495 565 3.9E-18 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_3759 19a7b777b0f8f3a417db34bd9da5928a 569 Gene3D G3DSA:3.90.400.10 120 190 4.3E-189 T 13-10-2018 BMD_3759 19a7b777b0f8f3a417db34bd9da5928a 569 Gene3D G3DSA:3.20.20.80 20 481 4.3E-189 T 13-10-2018 BMD_3759 19a7b777b0f8f3a417db34bd9da5928a 569 SUPERFAMILY SSF51011 492 563 4.68E-15 T 13-10-2018 BMD_3759 19a7b777b0f8f3a417db34bd9da5928a 569 Pfam PF00128 Alpha amylase, catalytic domain 43 388 4.5E-111 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_3277 b5eabba5f46d50dae339c23231cd855d 292 Pfam PF02567 Phenazine biosynthesis-like protein 9 282 1.3E-61 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BMD_3277 b5eabba5f46d50dae339c23231cd855d 292 Gene3D G3DSA:3.10.310.10 123 281 9.6E-86 T 13-10-2018 BMD_3277 b5eabba5f46d50dae339c23231cd855d 292 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 5 290 6.5E-65 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BMD_3277 b5eabba5f46d50dae339c23231cd855d 292 PIRSF PIRSF016184 1 292 1.5E-87 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BMD_3277 b5eabba5f46d50dae339c23231cd855d 292 Gene3D G3DSA:3.10.310.10 8 122 9.6E-86 T 13-10-2018 BMD_3277 b5eabba5f46d50dae339c23231cd855d 292 SUPERFAMILY SSF54506 4 292 3.87E-68 T 13-10-2018 BMD_2470 ad86020481eb73308d96166014e4e241 531 Pfam PF00128 Alpha amylase, catalytic domain 70 394 6.0E-85 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_2470 ad86020481eb73308d96166014e4e241 531 Pfam PF11941 Domain of unknown function (DUF3459) 444 524 1.2E-7 T 13-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) BMD_2470 ad86020481eb73308d96166014e4e241 531 Gene3D G3DSA:3.90.400.10 160 224 1.7E-157 T 13-10-2018 BMD_2470 ad86020481eb73308d96166014e4e241 531 SUPERFAMILY SSF51445 47 457 2.01E-112 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_2470 ad86020481eb73308d96166014e4e241 531 Gene3D G3DSA:3.20.20.80 53 452 1.7E-157 T 13-10-2018 BMD_2470 ad86020481eb73308d96166014e4e241 531 SMART SM00642 55 451 3.2E-123 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_5055 61844beb9288b94a7bee0e5548796f48 215 Gene3D G3DSA:3.40.50.880 1 214 2.4E-74 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_5055 61844beb9288b94a7bee0e5548796f48 215 SUPERFAMILY SSF52317 2 206 8.46E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_5055 61844beb9288b94a7bee0e5548796f48 215 Pfam PF00117 Glutamine amidotransferase class-I 4 199 5.0E-23 T 13-10-2018 IPR017926 Glutamine amidotransferase BMD_5055 61844beb9288b94a7bee0e5548796f48 215 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 204 36.506 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BMD_5055 61844beb9288b94a7bee0e5548796f48 215 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 203 1.8E-70 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BMD_5055 61844beb9288b94a7bee0e5548796f48 215 PIRSF PIRSF000495 1 207 8.7E-77 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BMD_2164 ae4de9205331de63b384b6150d8c9d59 145 SMART SM00316 4 73 2.6E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_2164 ae4de9205331de63b384b6150d8c9d59 145 SUPERFAMILY SSF50249 4 80 1.16E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_2164 ae4de9205331de63b384b6150d8c9d59 145 Gene3D G3DSA:2.40.50.140 1 83 2.9E-27 T 13-10-2018 BMD_2164 ae4de9205331de63b384b6150d8c9d59 145 Pfam PF00575 S1 RNA binding domain 3 73 4.2E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_0748 e3210ba1cbcb1404880a2db0e39ac926 241 Pfam PF00756 Putative esterase 15 232 8.3E-48 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 BMD_0748 e3210ba1cbcb1404880a2db0e39ac926 241 SUPERFAMILY SSF53474 7 240 3.8E-36 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0748 e3210ba1cbcb1404880a2db0e39ac926 241 Gene3D G3DSA:3.40.50.1820 1 241 6.0E-48 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2889 f3dde94173b0d027b0bdd4e6e0f49e43 258 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 56 249 5.4E-58 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BMD_2889 f3dde94173b0d027b0bdd4e6e0f49e43 258 SUPERFAMILY SSF56529 47 254 1.23E-66 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_2889 f3dde94173b0d027b0bdd4e6e0f49e43 258 Pfam PF10370 Domain of unknown function (DUF2437) 1 50 1.9E-14 T 13-10-2018 IPR018833 Domain of unknown function DUF2437 BMD_2889 f3dde94173b0d027b0bdd4e6e0f49e43 258 Gene3D G3DSA:3.90.850.10 52 254 1.0E-68 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_0264 4131b335c17d7ea2ba8d7e084e66d0a7 730 SUPERFAMILY SSF54001 403 662 6.31E-44 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_0264 4131b335c17d7ea2ba8d7e084e66d0a7 730 Pfam PF01841 Transglutaminase-like superfamily 425 548 4.5E-27 T 13-10-2018 IPR002931 Transglutaminase-like BMD_0264 4131b335c17d7ea2ba8d7e084e66d0a7 730 Gene3D G3DSA:3.10.620.30 386 563 2.0E-23 T 13-10-2018 BMD_0264 4131b335c17d7ea2ba8d7e084e66d0a7 730 SMART SM00460 474 550 6.9E-21 T 13-10-2018 IPR002931 Transglutaminase-like BMD_0517 67c6bf874e058abc84c7d7e6ffe5fb60 256 PIRSF PIRSF005902 1 256 1.2E-46 T 13-10-2018 IPR001130 TatD family GO:0016788 BMD_0517 67c6bf874e058abc84c7d7e6ffe5fb60 256 Gene3D G3DSA:3.20.20.140 2 255 1.2E-48 T 13-10-2018 BMD_0517 67c6bf874e058abc84c7d7e6ffe5fb60 256 SUPERFAMILY SSF51556 4 254 5.88E-45 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_0517 67c6bf874e058abc84c7d7e6ffe5fb60 256 Pfam PF01026 TatD related DNase 5 252 1.6E-39 T 13-10-2018 IPR001130 TatD family GO:0016788 BMD_0517 67c6bf874e058abc84c7d7e6ffe5fb60 256 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 4 12 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 49 1.2E-16 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 Gene3D G3DSA:1.10.260.40 1 60 7.2E-17 T 13-10-2018 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 Pfam PF13377 Periplasmic binding protein-like domain 172 337 6.6E-38 T 13-10-2018 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 SMART SM00354 1 76 3.4E-13 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 SUPERFAMILY SSF53822 67 331 2.55E-53 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 Gene3D G3DSA:3.40.50.2300 163 298 1.6E-57 T 13-10-2018 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 SUPERFAMILY SSF47413 1 49 4.64E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2741 2ea11a4e1febabbed91b03d8bb7a451c 344 Gene3D G3DSA:3.40.50.2300 79 329 1.6E-57 T 13-10-2018 BMD_3695 d2d601ea586f7ae1e796034a8048eb2e 274 SUPERFAMILY SSF53335 10 189 1.52E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_3695 d2d601ea586f7ae1e796034a8048eb2e 274 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 2 271 28.658 T 13-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 BMD_3695 d2d601ea586f7ae1e796034a8048eb2e 274 Pfam PF13649 Methyltransferase domain 47 138 2.9E-19 T 13-10-2018 BMD_3695 d2d601ea586f7ae1e796034a8048eb2e 274 Gene3D G3DSA:3.40.50.150 3 237 1.4E-42 T 13-10-2018 BMD_3695 d2d601ea586f7ae1e796034a8048eb2e 274 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 10 271 4.9E-66 T 13-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 Gene3D G3DSA:2.30.40.10 11 418 4.6E-158 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 14 422 1.4E-152 T 13-10-2018 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 Hamap MF_00220_B Dihydroorotase [pyrC]. 3 422 44.579 T 13-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 ProSitePatterns PS00483 Dihydroorotase signature 2. 301 312 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 SUPERFAMILY SSF51556 53 366 1.57E-112 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 Pfam PF01979 Amidohydrolase family 49 419 4.0E-52 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 ProSitePatterns PS00482 Dihydroorotase signature 1. 56 64 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 SUPERFAMILY SSF51338 1 422 4.62E-30 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_4242 15dd2b176604e04b4daa8ba8cd6298be 429 Gene3D G3DSA:3.20.20.140 53 365 4.6E-158 T 13-10-2018 BMD_2648 3c99dd8df28c21f85d60cce8bb13b2b4 178 Gene3D G3DSA:3.10.450.420 25 178 1.0E-50 T 13-10-2018 BMD_2648 3c99dd8df28c21f85d60cce8bb13b2b4 178 Pfam PF16800 IseA DL-endopeptidase inhibitor 29 176 4.6E-50 T 13-10-2018 IPR031841 DL-endopeptidase inhibitor IseA BMD_1483 10a7e192086a775ccd5a64a21cbb511c 403 SUPERFAMILY SSF103473 8 129 6.93E-17 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1483 10a7e192086a775ccd5a64a21cbb511c 403 Pfam PF07690 Major Facilitator Superfamily 225 394 1.7E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1483 10a7e192086a775ccd5a64a21cbb511c 403 Pfam PF07690 Major Facilitator Superfamily 5 138 6.9E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1483 10a7e192086a775ccd5a64a21cbb511c 403 Gene3D G3DSA:1.20.1250.20 14 210 1.6E-30 T 13-10-2018 BMD_1483 10a7e192086a775ccd5a64a21cbb511c 403 Gene3D G3DSA:1.20.1250.20 219 402 4.0E-23 T 13-10-2018 BMD_1483 10a7e192086a775ccd5a64a21cbb511c 403 SUPERFAMILY SSF103473 142 395 6.54E-36 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0292 186a3f9545a863afc9b09245a705fe3b 96 SUPERFAMILY SSF141000 4 94 3.79E-32 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 BMD_0292 186a3f9545a863afc9b09245a705fe3b 96 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 3 96 25.645 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 BMD_0292 186a3f9545a863afc9b09245a705fe3b 96 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 96 1.3E-34 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 BMD_0292 186a3f9545a863afc9b09245a705fe3b 96 Gene3D G3DSA:1.10.20.60 1 94 1.8E-32 T 13-10-2018 BMD_0292 186a3f9545a863afc9b09245a705fe3b 96 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 21 91 3.7E-22 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 BMD_1024 1c629fdb92a665a094a1a5882594458d 297 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 256 1.2E-20 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 BMD_1024 1c629fdb92a665a094a1a5882594458d 297 Gene3D G3DSA:3.30.420.40 4 289 7.7E-60 T 13-10-2018 BMD_1024 1c629fdb92a665a094a1a5882594458d 297 Gene3D G3DSA:3.30.420.40 109 280 7.7E-60 T 13-10-2018 BMD_1024 1c629fdb92a665a094a1a5882594458d 297 SUPERFAMILY SSF53067 110 296 5.55E-40 T 13-10-2018 BMD_1024 1c629fdb92a665a094a1a5882594458d 297 SUPERFAMILY SSF53067 1 103 7.67E-15 T 13-10-2018 BMD_1374 4a9a787c13323206df922954e346a76c 933 SMART SM00487 251 518 0.0024 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_1374 4a9a787c13323206df922954e346a76c 933 SUPERFAMILY SSF52540 166 893 5.91E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1374 4a9a787c13323206df922954e346a76c 933 Gene3D G3DSA:3.40.50.300 724 925 5.4E-43 T 13-10-2018 BMD_1374 4a9a787c13323206df922954e346a76c 933 Pfam PF13307 Helicase C-terminal domain 745 910 3.7E-40 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BMD_1374 4a9a787c13323206df922954e346a76c 933 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 3 173 3.6E-26 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_1374 4a9a787c13323206df922954e346a76c 933 Gene3D G3DSA:3.40.50.300 253 510 2.5E-40 T 13-10-2018 BMD_1374 4a9a787c13323206df922954e346a76c 933 TIGRFAM TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase 4 928 6.1E-271 T 13-10-2018 IPR006310 3'-5' exonuclease DinG GO:0005524|GO:0008408 BMD_1374 4a9a787c13323206df922954e346a76c 933 SMART SM00479 4 171 1.1E-40 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_1374 4a9a787c13323206df922954e346a76c 933 Pfam PF00929 Exonuclease 6 162 6.7E-32 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_1374 4a9a787c13323206df922954e346a76c 933 SMART SM00491 763 897 2.5E-30 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BMD_1374 4a9a787c13323206df922954e346a76c 933 Hamap MF_02206 3'-5' exonuclease DinG [dinG]. 1 929 27.7 T 13-10-2018 IPR006310 3'-5' exonuclease DinG GO:0005524|GO:0008408 BMD_1374 4a9a787c13323206df922954e346a76c 933 SUPERFAMILY SSF53098 4 230 9.49E-58 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_1374 4a9a787c13323206df922954e346a76c 933 SUPERFAMILY SSF52540 672 895 4.48E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1374 4a9a787c13323206df922954e346a76c 933 Gene3D G3DSA:3.30.420.10 1 172 3.0E-48 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_1374 4a9a787c13323206df922954e346a76c 933 Pfam PF04851 Type III restriction enzyme, res subunit 253 466 9.1E-9 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 SUPERFAMILY SSF46785 6 142 2.12E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 Gene3D G3DSA:1.10.10.10 2 140 6.0E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 SMART SM00347 25 125 1.2E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 Pfam PF01047 MarR family 32 89 1.8E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 1.3E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 1.3E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 1.3E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2514 b65828d7870aaf1272fa2b13ff25fa53 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 1.3E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2874 03232cb8c0174012a0d683b67a778798 274 Pfam PF00565 Staphylococcal nuclease homologue 90 195 1.6E-29 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 BMD_2874 03232cb8c0174012a0d683b67a778798 274 ProSitePatterns PS01123 Thermonuclease family signature 1. 75 100 - T 13-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 BMD_2874 03232cb8c0174012a0d683b67a778798 274 SMART SM00318 64 196 1.6E-39 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 BMD_2874 03232cb8c0174012a0d683b67a778798 274 SUPERFAMILY SSF50199 68 199 8.63E-38 T 13-10-2018 BMD_2874 03232cb8c0174012a0d683b67a778798 274 Gene3D G3DSA:2.40.50.90 58 203 7.6E-53 T 13-10-2018 IPR035437 SNase-like, OB-fold superfamily BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 SUPERFAMILY SSF51735 2 167 1.92E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 Pfam PF02056 Family 4 glycosyl hydrolase 3 184 2.2E-68 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 SUPERFAMILY SSF56327 168 433 5.68E-76 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 139 169 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 194 405 1.2E-67 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 Gene3D G3DSA:3.90.1820.20 1 428 7.2E-148 T 13-10-2018 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 3 18 1.2E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 72 88 1.2E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 94 107 1.2E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 164 175 1.2E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 110 130 1.2E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 190 202 1.2E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_2737 df6026b61de02dd6e7a6eb9686931884 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 139 156 1.2E-38 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_4946 e6b62461b94040e024c96cf05c66a344 439 Pfam PF03553 Na+/H+ antiporter family 150 433 1.8E-68 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 BMD_4946 e6b62461b94040e024c96cf05c66a344 439 Pfam PF13726 Na+-H+ antiporter family 2 88 3.3E-31 T 13-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal BMD_4606 8d48110475733c7e901c54eb190f26bf 138 SUPERFAMILY SSF46785 2 126 1.99E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4606 8d48110475733c7e901c54eb190f26bf 138 Gene3D G3DSA:1.10.10.10 1 138 1.3E-51 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4606 8d48110475733c7e901c54eb190f26bf 138 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site BMD_4606 8d48110475733c7e901c54eb190f26bf 138 Pfam PF02082 Transcriptional regulator 1 82 5.8E-27 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_4606 8d48110475733c7e901c54eb190f26bf 138 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 124 1.4E-34 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_4792 6cc5e7680fa86db7543ccd6136d26050 264 Pfam PF13263 PHP-associated 233 260 1.3E-4 T 13-10-2018 BMD_4792 6cc5e7680fa86db7543ccd6136d26050 264 Gene3D G3DSA:3.20.20.140 1 263 1.4E-66 T 13-10-2018 BMD_4792 6cc5e7680fa86db7543ccd6136d26050 264 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 4 259 6.1E-70 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 BMD_4792 6cc5e7680fa86db7543ccd6136d26050 264 Pfam PF02811 PHP domain 5 174 2.9E-11 T 13-10-2018 IPR004013 PHP domain GO:0003824 BMD_4792 6cc5e7680fa86db7543ccd6136d26050 264 SUPERFAMILY SSF89550 1 259 7.46E-36 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BMD_4711 4eefebcac684c7f0f21414de3a60fd1b 202 TIGRFAM TIGR02046 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 6 201 1.6E-54 T 13-10-2018 IPR011138 Succinate dehydrogenase cytochrome b558 subunit BMD_4711 4eefebcac684c7f0f21414de3a60fd1b 202 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 92 193 8.7E-14 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4711 4eefebcac684c7f0f21414de3a60fd1b 202 PIRSF PIRSF000170 1 202 4.4E-102 T 13-10-2018 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute BMD_4711 4eefebcac684c7f0f21414de3a60fd1b 202 Gene3D G3DSA:1.20.1300.10 2 202 1.3E-45 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4711 4eefebcac684c7f0f21414de3a60fd1b 202 SUPERFAMILY SSF81343 4 201 6.54E-59 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_2560 ed758e7526325274c484fec7ec682741 339 Pfam PF13478 XdhC Rossmann domain 188 322 8.3E-31 T 13-10-2018 IPR027051 XdhC Rossmann domain BMD_2560 ed758e7526325274c484fec7ec682741 339 Pfam PF02625 XdhC and CoxI family 16 74 3.8E-14 T 13-10-2018 IPR003777 XdhC- CoxI BMD_2560 ed758e7526325274c484fec7ec682741 339 Gene3D G3DSA:3.40.50.720 187 337 5.2E-49 T 13-10-2018 BMD_4565 5ea52dc449979e0a231a5ea929a0237b 252 Gene3D G3DSA:2.20.25.110 144 207 5.2E-84 T 13-10-2018 BMD_4565 5ea52dc449979e0a231a5ea929a0237b 252 SUPERFAMILY SSF53335 4 249 1.08E-55 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4565 5ea52dc449979e0a231a5ea929a0237b 252 Gene3D G3DSA:3.40.50.150 6 246 5.2E-84 T 13-10-2018 BMD_4565 5ea52dc449979e0a231a5ea929a0237b 252 Pfam PF13649 Methyltransferase domain 41 136 3.2E-21 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 Gene3D G3DSA:3.60.20.40 359 536 1.4E-68 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 Pfam PF01019 Gamma-glutamyltranspeptidase 37 531 7.5E-158 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 SUPERFAMILY SSF56235 4 536 4.24E-181 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 355 373 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 235 251 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 410 425 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 379 397 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 113 131 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 44 69 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 131 150 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 264 283 5.7E-41 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 Gene3D G3DSA:1.10.246.130 251 358 2.3E-24 T 13-10-2018 BMD_3034 8aa28f7bd9773c3299885a9ad4562e4f 536 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 22 528 2.1E-109 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BMD_4093 e1dde4972f92a5356b87027e3fba0974 316 Pfam PF01715 IPP transferase 41 285 1.3E-87 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BMD_4093 e1dde4972f92a5356b87027e3fba0974 316 SUPERFAMILY SSF52540 7 231 1.48E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4093 e1dde4972f92a5356b87027e3fba0974 316 SUPERFAMILY SSF52540 8 155 1.57E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4093 e1dde4972f92a5356b87027e3fba0974 316 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 8 292 6.7E-117 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BMD_4093 e1dde4972f92a5356b87027e3fba0974 316 Gene3D G3DSA:3.40.50.300 12 289 3.1E-111 T 13-10-2018 BMD_4093 e1dde4972f92a5356b87027e3fba0974 316 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 302 31.859 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BMD_4093 e1dde4972f92a5356b87027e3fba0974 316 Gene3D G3DSA:1.10.20.140 115 187 3.1E-111 T 13-10-2018 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 SMART SM00421 149 206 2.3E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 SUPERFAMILY SSF46894 147 207 3.4E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 Pfam PF00072 Response regulator receiver domain 5 116 1.9E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 205 1.1E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 Gene3D G3DSA:3.40.50.12740 3 210 3.9E-60 T 13-10-2018 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 SMART SM00448 3 115 1.0E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 SUPERFAMILY SSF52172 1 131 3.7E-31 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 4.4E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 4.4E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_2645 ee4ad4e78590dda70c151a07e3a76409 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 4.4E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_3688 9e59ee3286eee2b02d3ca141940301fa 210 Gene3D G3DSA:1.10.357.10 6 195 1.1E-45 T 13-10-2018 BMD_3688 9e59ee3286eee2b02d3ca141940301fa 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 61 3.4E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3688 9e59ee3286eee2b02d3ca141940301fa 210 SUPERFAMILY SSF46689 9 75 9.75E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3688 9e59ee3286eee2b02d3ca141940301fa 210 Pfam PF14278 Transcriptional regulator C-terminal region 97 174 3.0E-15 T 13-10-2018 IPR039532 Transcriptional regulator TetR, C-terminal, Firmicutes type BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 31 729 3.4E-261 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Pfam PF02824 TGS domain 393 452 3.0E-22 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 SMART SM00954 240 350 1.6E-69 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Pfam PF13291 ACT domain 652 729 5.6E-22 T 13-10-2018 IPR002912 ACT domain BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Gene3D G3DSA:3.30.70.260 653 732 4.1E-18 T 13-10-2018 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 SUPERFAMILY SSF109604 10 196 4.71E-77 T 13-10-2018 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 SUPERFAMILY SSF81301 197 369 6.05E-67 T 13-10-2018 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Pfam PF13328 HD domain 31 180 9.7E-53 T 13-10-2018 IPR003607 HD/PDEase domain BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 SUPERFAMILY SSF55021 655 731 4.58E-13 T 13-10-2018 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 SUPERFAMILY SSF81271 380 452 5.4E-22 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 SMART SM00471 46 158 1.4E-9 T 13-10-2018 IPR003607 HD/PDEase domain BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Gene3D G3DSA:3.10.20.30 386 458 4.0E-31 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Pfam PF04607 Region found in RelA / SpoT proteins 240 350 2.8E-40 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Gene3D G3DSA:3.30.460.10 198 329 7.1E-55 T 13-10-2018 BMD_4617 194f8c8906cd55ce68e808d9e75efaf1 732 Gene3D G3DSA:1.10.3210.10 1 196 2.1E-90 T 13-10-2018 BMD_5081 80cd270595ad8854eee8e6546d432107 72 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 2 71 17.007 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BMD_5081 80cd270595ad8854eee8e6546d432107 72 Pfam PF02416 mttA/Hcf106 family 5 55 8.0E-21 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BMD_5081 80cd270595ad8854eee8e6546d432107 72 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 2 22 8.5E-5 T 13-10-2018 BMD_5081 80cd270595ad8854eee8e6546d432107 72 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 22 41 8.5E-5 T 13-10-2018 BMD_5081 80cd270595ad8854eee8e6546d432107 72 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 48 1.6E-17 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BMD_4493 5d183a48e1d99eade3c4f752def02ab1 49 SUPERFAMILY SSF57829 1 49 6.71E-19 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BMD_4493 5d183a48e1d99eade3c4f752def02ab1 49 Gene3D G3DSA:2.20.28.120 1 49 3.2E-24 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4493 5d183a48e1d99eade3c4f752def02ab1 49 Pfam PF00471 Ribosomal protein L33 3 49 3.9E-23 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4493 5d183a48e1d99eade3c4f752def02ab1 49 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4493 5d183a48e1d99eade3c4f752def02ab1 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 18.14 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4493 5d183a48e1d99eade3c4f752def02ab1 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 3.6E-20 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0845 814082f90660184e5d1f68aebfbfb0e3 642 Pfam PF00884 Sulfatase 245 536 2.3E-31 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BMD_0845 814082f90660184e5d1f68aebfbfb0e3 642 Gene3D G3DSA:3.40.720.10 237 546 2.4E-76 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_0845 814082f90660184e5d1f68aebfbfb0e3 642 SUPERFAMILY SSF53649 243 634 5.23E-77 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_0845 814082f90660184e5d1f68aebfbfb0e3 642 PIRSF PIRSF005091 1 620 4.3E-191 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 Pfam PF13545 Crp-like helix-turn-helix domain 146 216 1.6E-13 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 SUPERFAMILY SSF46785 143 228 1.96E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 Gene3D G3DSA:2.60.120.10 6 139 5.9E-27 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 SMART SM00100 4 124 4.4E-14 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 SMART SM00419 163 211 9.0E-11 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 SUPERFAMILY SSF51206 8 138 6.42E-30 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 Pfam PF00027 Cyclic nucleotide-binding domain 24 112 2.9E-17 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 Gene3D G3DSA:1.10.10.10 140 227 8.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 185 200 8.0E-6 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BMD_0677 fc0d4ee42f73d17c23cb4fcc56df2db9 232 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 169 185 8.0E-6 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BMD_2076 4be9fc136e201b9da4e7a0810e78107f 54 Pfam PF10055 Uncharacterized small protein (DUF2292) 9 44 8.1E-16 T 13-10-2018 IPR018743 Protein of unknown function DUF2292 BMD_1209 8225b52485dee312398d9648b9979700 236 Gene3D G3DSA:1.10.1740.10 16 96 4.6E-9 T 13-10-2018 BMD_1209 8225b52485dee312398d9648b9979700 236 SUPERFAMILY SSF88946 17 98 5.49E-18 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_1209 8225b52485dee312398d9648b9979700 236 Hamap MF_02064 RNA polymerase sigma factor SigI [sigI]. 10 236 26.643 T 13-10-2018 IPR014244 RNA polymerase sigma-I type BMD_1209 8225b52485dee312398d9648b9979700 236 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 27 220 6.7E-12 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_1209 8225b52485dee312398d9648b9979700 236 PIRSF PIRSF038953 2 236 1.1E-64 T 13-10-2018 IPR014244 RNA polymerase sigma-I type BMD_1209 8225b52485dee312398d9648b9979700 236 TIGRFAM TIGR02895 spore_sigI: RNA polymerase sigma-I factor 15 235 2.6E-80 T 13-10-2018 IPR014244 RNA polymerase sigma-I type BMD_1209 8225b52485dee312398d9648b9979700 236 Pfam PF04542 Sigma-70 region 2 29 99 7.1E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 Pfam PF00571 CBS domain 217 271 1.5E-6 T 13-10-2018 IPR000644 CBS domain BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 Gene3D G3DSA:3.10.580.10 195 348 7.6E-49 T 13-10-2018 BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 SUPERFAMILY SSF54631 204 342 6.7E-29 T 13-10-2018 BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 SMART SM01091 355 432 2.6E-21 T 13-10-2018 IPR005170 Transporter-associated domain BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 Pfam PF03471 Transporter associated domain 356 431 3.6E-16 T 13-10-2018 IPR005170 Transporter-associated domain BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 SUPERFAMILY SSF56176 352 435 2.64E-16 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 Pfam PF01595 Domain of unknown function DUF21 7 201 8.6E-49 T 13-10-2018 IPR002550 CNNM, transmembrane domain BMD_2859 27ba608233c8f5a5302315ecb76b1bdb 437 Gene3D G3DSA:3.30.465.10 349 437 8.3E-17 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_0153 00ae199d26950e9f9d76cdbbdb2ed567 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 144 6.5E-56 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0153 00ae199d26950e9f9d76cdbbdb2ed567 146 SUPERFAMILY SSF52080 4 144 4.19E-50 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily BMD_0153 00ae199d26950e9f9d76cdbbdb2ed567 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 6.9E-39 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P BMD_0153 00ae199d26950e9f9d76cdbbdb2ed567 146 Gene3D G3DSA:3.100.10.10 66 146 1.2E-28 T 13-10-2018 BMD_0153 00ae199d26950e9f9d76cdbbdb2ed567 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 110 140 - T 13-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0153 00ae199d26950e9f9d76cdbbdb2ed567 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 146 23.138 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 BMD_2870 0d540251eb4ac5f4349bae0cc48c9008 276 PIRSF PIRSF006483 1 276 4.7E-80 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_2870 0d540251eb4ac5f4349bae0cc48c9008 276 Gene3D G3DSA:3.30.70.120 188 263 1.4E-25 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_2870 0d540251eb4ac5f4349bae0cc48c9008 276 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 216 270 5.5E-23 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_2870 0d540251eb4ac5f4349bae0cc48c9008 276 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 8 210 1.4E-57 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_5003 1ca9b59947000b4be729c46e762fb527 290 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 4.8E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5003 1ca9b59947000b4be729c46e762fb527 290 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 5.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5003 1ca9b59947000b4be729c46e762fb527 290 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 5.0E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5003 1ca9b59947000b4be729c46e762fb527 290 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 51 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_5003 1ca9b59947000b4be729c46e762fb527 290 Gene3D G3DSA:1.10.357.10 1 193 8.3E-29 T 13-10-2018 BMD_5003 1ca9b59947000b4be729c46e762fb527 290 SUPERFAMILY SSF46689 3 68 2.46E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1078 5b865747991cc72854f137c28506d6ee 445 Gene3D G3DSA:1.20.1720.10 7 212 8.6E-48 T 13-10-2018 BMD_1078 5b865747991cc72854f137c28506d6ee 445 Pfam PF07690 Major Facilitator Superfamily 12 296 1.5E-44 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1078 5b865747991cc72854f137c28506d6ee 445 SUPERFAMILY SSF103473 4 436 5.49E-69 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1078 5b865747991cc72854f137c28506d6ee 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 217 235 3.3E-6 T 13-10-2018 BMD_1078 5b865747991cc72854f137c28506d6ee 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 10 34 3.3E-6 T 13-10-2018 BMD_1078 5b865747991cc72854f137c28506d6ee 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 100 120 3.3E-6 T 13-10-2018 BMD_1078 5b865747991cc72854f137c28506d6ee 445 PRINTS PR01036 Tetracycline resistance protein TetB signature 384 403 3.3E-6 T 13-10-2018 BMD_1078 5b865747991cc72854f137c28506d6ee 445 Gene3D G3DSA:1.20.1250.20 241 441 4.3E-21 T 13-10-2018 BMD_1078 5b865747991cc72854f137c28506d6ee 445 ProSitePatterns PS00216 Sugar transport proteins signature 1. 60 76 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_0203 96b199364772534cf256ddadf53b2a6a 180 SUPERFAMILY SSF47413 1 65 1.97E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_0203 96b199364772534cf256ddadf53b2a6a 180 Gene3D G3DSA:1.10.260.40 1 65 5.6E-21 T 13-10-2018 BMD_0203 96b199364772534cf256ddadf53b2a6a 180 Pfam PF07883 Cupin domain 124 173 3.3E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_0203 96b199364772534cf256ddadf53b2a6a 180 Gene3D G3DSA:2.60.120.10 66 175 8.7E-15 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_0203 96b199364772534cf256ddadf53b2a6a 180 Pfam PF01381 Helix-turn-helix 7 61 1.9E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_0203 96b199364772534cf256ddadf53b2a6a 180 SUPERFAMILY SSF51182 55 176 2.88E-21 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_0203 96b199364772534cf256ddadf53b2a6a 180 SMART SM00530 6 61 2.1E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 418 4.9E-166 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 1.0E-33 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Gene3D G3DSA:3.30.470.20 189 324 1.5E-58 T 13-10-2018 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 SUPERFAMILY SSF56059 102 322 9.55E-63 T 13-10-2018 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Gene3D G3DSA:3.30.1490.20 119 188 1.1E-26 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 418 42.601 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Gene3D G3DSA:3.40.50.20 1 93 1.0E-35 T 13-10-2018 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 SUPERFAMILY SSF51246 323 418 2.75E-27 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 287 294 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 293 1.1E-80 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 326 416 7.0E-26 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 SMART SM01209 101 293 1.9E-130 T 13-10-2018 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 SUPERFAMILY SSF52440 2 101 2.3E-33 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 Gene3D G3DSA:3.90.600.10 325 424 3.2E-33 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0282 9e9128a62ca6fa4752793692c2b787b6 424 SMART SM01210 325 418 3.6E-43 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 SUPERFAMILY SSF51161 242 337 2.06E-17 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 260 292 1.0E-6 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 Gene3D G3DSA:3.90.550.10 1 235 3.4E-74 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 Gene3D G3DSA:2.160.10.10 236 359 7.1E-17 T 13-10-2018 BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 SUPERFAMILY SSF55957 681 755 4.45E-9 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 Gene3D G3DSA:3.30.310.50 678 759 1.4E-8 T 13-10-2018 BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 Pfam PF00483 Nucleotidyl transferase 2 231 1.3E-52 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_4494 4a9d5187869bd9c667ce7a684c62194a 759 SUPERFAMILY SSF53448 2 266 1.85E-78 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4596 7a87f60114438d2c4ee4516d9eba0828 89 Pfam PF06135 Bacterial protein of unknown function (DUF965) 5 83 7.8E-38 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 BMD_4596 7a87f60114438d2c4ee4516d9eba0828 89 Hamap MF_01507 UPF0297 protein . 1 85 28.254 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 BMD_4596 7a87f60114438d2c4ee4516d9eba0828 89 PIRSF PIRSF037258 1 88 3.4E-46 T 13-10-2018 IPR009309 Uncharacterised protein family UPF0297 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 307 5.0E-28 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 280 298 3.0E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 202 218 3.0E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 112 120 3.0E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 151 175 3.0E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 3.0E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 64 74 3.0E-27 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 Hamap MF_01685 Ferredoxin--NADP reductase. 6 333 36.799 T 13-10-2018 IPR022890 Ferredoxin--NADP reductase, type 2 GO:0004324|GO:0055114 KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 Gene3D G3DSA:3.50.50.60 7 309 1.0E-85 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 292 1.7E-18 T 13-10-2018 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.7E-18 T 13-10-2018 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 241 257 1.7E-18 T 13-10-2018 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 1.7E-18 T 13-10-2018 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 1.7E-18 T 13-10-2018 BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 Gene3D G3DSA:3.50.50.60 127 248 1.0E-85 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1511 c04e66570c8f5b69d1442c5f732b15ac 349 SUPERFAMILY SSF51905 1 317 8.03E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_5114 666d7378c41a7ddb1e353d3821669e5f 509 Pfam PF15975 Flotillin 369 464 4.2E-15 T 13-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 BMD_5114 666d7378c41a7ddb1e353d3821669e5f 509 SUPERFAMILY SSF117892 69 211 1.22E-33 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily BMD_5114 666d7378c41a7ddb1e353d3821669e5f 509 Pfam PF01145 SPFH domain / Band 7 family 31 221 2.3E-24 T 13-10-2018 IPR001107 Band 7 domain BMD_5114 666d7378c41a7ddb1e353d3821669e5f 509 Gene3D G3DSA:3.30.479.30 78 194 3.8E-37 T 13-10-2018 BMD_5114 666d7378c41a7ddb1e353d3821669e5f 509 SMART SM00244 120 302 1.8E-8 T 13-10-2018 IPR001107 Band 7 domain BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Pfam PF12705 PD-(D/E)XK nuclease superfamily 1066 1234 1.7E-8 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Hamap MF_01451 ATP-dependent helicase/nuclease subunit A [addA]. 11 1245 19.935 T 13-10-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 SUPERFAMILY SSF52540 10 899 5.73E-122 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Gene3D G3DSA:3.40.50.300 769 971 1.0E-49 T 13-10-2018 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Gene3D G3DSA:3.40.50.300 479 768 9.0E-59 T 13-10-2018 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 SUPERFAMILY SSF52980 1025 1242 2.41E-40 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Gene3D G3DSA:3.90.320.10 1003 1245 5.5E-80 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Pfam PF00580 UvrD/REP helicase N-terminal domain 14 465 6.3E-89 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Pfam PF13361 UvrD-like helicase C-terminal domain 476 894 6.3E-37 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Gene3D G3DSA:3.40.50.300 281 478 3.5E-32 T 13-10-2018 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 Gene3D G3DSA:3.40.50.300 6 191 1.0E-39 T 13-10-2018 BMD_0643 88a26462e539282cd58fe10927eb89a6 1245 TIGRFAM TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit 13 1244 0.0 T 13-10-2018 IPR014152 DNA helicase subunit AddA GO:0004003|GO:0006302 BMD_4489 f2723716232a125e89a65aac388db2e2 506 Gene3D G3DSA:1.25.40.10 394 506 3.8E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_4489 f2723716232a125e89a65aac388db2e2 506 SMART SM00028 461 494 0.001 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4489 f2723716232a125e89a65aac388db2e2 506 SMART SM00028 427 460 4.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4489 f2723716232a125e89a65aac388db2e2 506 SUPERFAMILY SSF48452 399 504 9.62E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_4489 f2723716232a125e89a65aac388db2e2 506 SUPERFAMILY SSF144091 176 360 1.15E-43 T 13-10-2018 BMD_4489 f2723716232a125e89a65aac388db2e2 506 Pfam PF13414 TPR repeat 435 474 1.5E-6 T 13-10-2018 BMD_4489 f2723716232a125e89a65aac388db2e2 506 Pfam PF01694 Rhomboid family 220 355 5.3E-36 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BMD_4489 f2723716232a125e89a65aac388db2e2 506 Gene3D G3DSA:1.20.1540.10 175 366 9.0E-50 T 13-10-2018 IPR035952 Rhomboid-like superfamily BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 SMART SM00878 335 440 3.0E-38 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 322 5.2E-76 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 SUPERFAMILY SSF51246 332 443 7.85E-32 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 Gene3D G3DSA:3.30.1490.20 130 201 1.0E-146 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 109 2.0E-40 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 285 292 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 Gene3D G3DSA:3.30.470.20 86 439 1.0E-146 T 13-10-2018 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 SUPERFAMILY SSF52440 2 112 3.88E-42 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 Pfam PF02785 Biotin carboxylase C-terminal domain 335 440 2.8E-30 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 Gene3D G3DSA:3.40.50.20 1 84 5.6E-32 T 13-10-2018 BMD_4277 f72b4b2b61642893eb1e95aed45b6c20 450 SUPERFAMILY SSF56059 112 348 3.71E-69 T 13-10-2018 BMD_0399 9b323a26bf16f1517017004544185402 104 Gene3D G3DSA:2.30.30.340 52 104 2.4E-26 T 13-10-2018 BMD_0399 9b323a26bf16f1517017004544185402 104 SUPERFAMILY SSF101697 2 104 4.97E-46 T 13-10-2018 IPR036289 Hypothetical protein YfhH BMD_0399 9b323a26bf16f1517017004544185402 104 Gene3D G3DSA:1.10.287.880 1 51 8.9E-27 T 13-10-2018 BMD_0399 9b323a26bf16f1517017004544185402 104 Pfam PF08838 Protein of unknown function (DUF1811) 4 103 8.1E-47 T 13-10-2018 IPR014938 Protein of unknown function DUF1811 BMD_4469 79ec8601f8d766e29ad5aa0fab833a5c 492 Gene3D G3DSA:3.40.640.10 86 325 1.9E-59 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4469 79ec8601f8d766e29ad5aa0fab833a5c 492 Pfam PF02347 Glycine cleavage system P-protein 45 297 2.0E-8 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BMD_4469 79ec8601f8d766e29ad5aa0fab833a5c 492 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 7 485 60.504 T 13-10-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 BMD_4469 79ec8601f8d766e29ad5aa0fab833a5c 492 Gene3D G3DSA:3.90.1150.10 338 470 1.9E-50 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4469 79ec8601f8d766e29ad5aa0fab833a5c 492 SUPERFAMILY SSF53383 9 483 1.41E-118 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0611 4be5cccb35c3ed2fcfb98068bfda548f 329 Pfam PF03099 Biotin/lipoate A/B protein ligase family 48 151 8.2E-13 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BMD_0611 4be5cccb35c3ed2fcfb98068bfda548f 329 SUPERFAMILY SSF55681 2 241 8.52E-81 T 13-10-2018 BMD_0611 4be5cccb35c3ed2fcfb98068bfda548f 329 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 244 328 1.0E-32 T 13-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 BMD_0611 4be5cccb35c3ed2fcfb98068bfda548f 329 Gene3D G3DSA:3.30.930.10 3 242 3.8E-81 T 13-10-2018 BMD_0611 4be5cccb35c3ed2fcfb98068bfda548f 329 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 2 322 4.9E-132 T 13-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 BMD_0611 4be5cccb35c3ed2fcfb98068bfda548f 329 Gene3D G3DSA:3.30.390.50 243 329 3.5E-34 T 13-10-2018 BMD_0611 4be5cccb35c3ed2fcfb98068bfda548f 329 SUPERFAMILY SSF82649 243 329 3.24E-28 T 13-10-2018 BMD_0223 76ec3f8a62ed83f6529ea97cb43d5eeb 278 Pfam PF08678 Rsbr N terminal 9 138 9.0E-35 T 13-10-2018 IPR014792 RsbS co-antagonist protein RsbRA N-terminal domain BMD_0223 76ec3f8a62ed83f6529ea97cb43d5eeb 278 Gene3D G3DSA:1.10.490.10 1 138 1.5E-26 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BMD_0223 76ec3f8a62ed83f6529ea97cb43d5eeb 278 SUPERFAMILY SSF52091 152 246 7.85E-16 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0223 76ec3f8a62ed83f6529ea97cb43d5eeb 278 Gene3D G3DSA:3.30.750.24 150 270 2.1E-38 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0223 76ec3f8a62ed83f6529ea97cb43d5eeb 278 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 4 137 6.0E-18 T 13-10-2018 BMD_0223 76ec3f8a62ed83f6529ea97cb43d5eeb 278 Pfam PF01740 STAS domain 158 249 2.4E-13 T 13-10-2018 IPR002645 STAS domain BMD_4395 b0a7c8aa591a7baecba8300264d532ea 303 Gene3D G3DSA:3.40.50.1820 55 302 1.3E-40 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4395 b0a7c8aa591a7baecba8300264d532ea 303 SUPERFAMILY SSF53474 21 297 1.85E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4395 b0a7c8aa591a7baecba8300264d532ea 303 Pfam PF12146 Serine aminopeptidase, S33 82 189 1.1E-11 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 9 119 5.1E-6 T 13-10-2018 IPR000014 PAS domain BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 SUPERFAMILY SSF46689 410 459 1.79E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 Pfam PF00158 Sigma-54 interaction domain 147 314 1.3E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 SUPERFAMILY SSF52540 145 388 1.87E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 Gene3D G3DSA:1.10.8.60 319 394 3.8E-23 T 13-10-2018 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 Gene3D G3DSA:1.10.10.60 406 460 1.5E-6 T 13-10-2018 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 SMART SM00382 166 314 3.5E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 Gene3D G3DSA:3.30.450.20 4 120 3.7E-13 T 13-10-2018 BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 SUPERFAMILY SSF55785 11 116 1.96E-10 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 SMART SM00091 6 73 2.8E-5 T 13-10-2018 IPR000014 PAS domain BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 Pfam PF13426 PAS domain 17 113 4.0E-7 T 13-10-2018 IPR000014 PAS domain BMD_2213 ee1c3244fd9b419a006339f4926b2bb5 460 Gene3D G3DSA:3.40.50.300 131 318 7.2E-67 T 13-10-2018 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 Pfam PF00459 Inositol monophosphatase family 8 259 6.0E-68 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 Gene3D G3DSA:3.30.540.10 1 144 5.9E-46 T 13-10-2018 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 Gene3D G3DSA:3.40.190.80 147 266 1.3E-34 T 13-10-2018 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 214 228 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 SUPERFAMILY SSF56655 5 259 7.46E-75 T 13-10-2018 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 85 98 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site BMD_1338 9486754cd899e54ef962a97df506d6a4 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 211 235 1.6E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 41 61 1.6E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 63 79 1.6E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 180 201 1.6E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 1.6E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BMD_1338 9486754cd899e54ef962a97df506d6a4 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 134 157 1.6E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BMD_0145 807c81e4637c452706dbb957108f6ec9 103 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0145 807c81e4637c452706dbb957108f6ec9 103 SUPERFAMILY SSF50104 1 99 3.61E-39 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily BMD_0145 807c81e4637c452706dbb957108f6ec9 103 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 100 8.5E-31 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0145 807c81e4637c452706dbb957108f6ec9 103 Pfam PF00467 KOW motif 5 36 7.3E-9 T 13-10-2018 IPR005824 KOW BMD_0145 807c81e4637c452706dbb957108f6ec9 103 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 95 23.457 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0145 807c81e4637c452706dbb957108f6ec9 103 Gene3D G3DSA:2.30.30.30 1 100 8.5E-43 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 BMD_0145 807c81e4637c452706dbb957108f6ec9 103 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 4.8E-42 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0145 807c81e4637c452706dbb957108f6ec9 103 SMART SM00739 2 29 8.2E-6 T 13-10-2018 IPR005824 KOW BMD_1175 9278c789cfb8507f613435c20acffc5a 291 SUPERFAMILY SSF74650 1 290 1.51E-50 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BMD_1175 9278c789cfb8507f613435c20acffc5a 291 Gene3D G3DSA:2.70.98.10 1 291 8.8E-96 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BMD_1175 9278c789cfb8507f613435c20acffc5a 291 Pfam PF01263 Aldose 1-epimerase 2 182 1.4E-24 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 Gene3D G3DSA:2.10.109.10 56 185 2.7E-45 T 13-10-2018 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 13 180 2.3E-51 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 SUPERFAMILY SSF51306 28 183 8.55E-52 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 Pfam PF00717 Peptidase S24-like 36 101 1.6E-20 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 ProSitePatterns PS00501 Signal peptidases I serine active site. 39 46 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 ProSitePatterns PS00761 Signal peptidases I signature 3. 144 157 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 30 46 2.8E-19 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 77 89 2.8E-19 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 139 158 2.8E-19 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_3224 ec9e3b4be1673b8a3c48b28d874039c6 186 ProSitePatterns PS00760 Signal peptidases I lysine active site. 79 91 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 SUPERFAMILY SSF47781 64 134 1.06E-19 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_4630 f177df9171b80535bea3edc32381bb1e 203 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 201 30.346 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 SMART SM00278 71 90 170.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 SMART SM00278 106 125 2.1 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 SUPERFAMILY SSF50249 1 61 3.54E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4630 f177df9171b80535bea3edc32381bb1e 203 Gene3D G3DSA:2.40.50.140 1 63 4.3E-17 T 13-10-2018 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 SUPERFAMILY SSF46929 155 200 3.66E-11 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily BMD_4630 f177df9171b80535bea3edc32381bb1e 203 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 4 201 2.9E-58 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 Gene3D G3DSA:1.10.8.10 153 200 2.5E-9 T 13-10-2018 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 Gene3D G3DSA:1.10.150.20 65 138 1.7E-23 T 13-10-2018 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 Pfam PF07499 RuvA, C-terminal domain 157 200 4.6E-13 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 Pfam PF01330 RuvA N terminal domain 2 60 9.0E-20 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 BMD_4630 f177df9171b80535bea3edc32381bb1e 203 Pfam PF14520 Helix-hairpin-helix domain 70 127 5.1E-14 T 13-10-2018 BMD_2087 8c41597ff4b62de72f3b96f6555b1905 304 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 243 256 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_2087 8c41597ff4b62de72f3b96f6555b1905 304 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 2 300 1.0E-109 T 13-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 BMD_2087 8c41597ff4b62de72f3b96f6555b1905 304 Pfam PF00294 pfkB family carbohydrate kinase 8 281 2.6E-57 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_2087 8c41597ff4b62de72f3b96f6555b1905 304 PIRSF PIRSF000535 1 303 1.1E-89 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BMD_2087 8c41597ff4b62de72f3b96f6555b1905 304 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 301 1.2E-109 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BMD_2087 8c41597ff4b62de72f3b96f6555b1905 304 SUPERFAMILY SSF53613 1 283 2.34E-68 T 13-10-2018 IPR029056 Ribokinase-like BMD_2087 8c41597ff4b62de72f3b96f6555b1905 304 Gene3D G3DSA:3.40.1190.20 1 304 3.2E-108 T 13-10-2018 IPR029056 Ribokinase-like BMD_0003 6a6f75b4ad30494beb0948c36ba69201 71 Gene3D G3DSA:3.10.290.10 1 70 5.7E-24 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_0003 6a6f75b4ad30494beb0948c36ba69201 71 SUPERFAMILY SSF55174 3 69 2.16E-18 T 13-10-2018 BMD_0003 6a6f75b4ad30494beb0948c36ba69201 71 TIGRFAM TIGR02988 YaaA_near_RecF: S4 domain protein YaaA 4 62 1.7E-31 T 13-10-2018 IPR014330 RNA-binding S4-related,YaaA BMD_0003 6a6f75b4ad30494beb0948c36ba69201 71 Pfam PF13275 S4 domain 5 67 2.0E-27 T 13-10-2018 BMD_1313 05cb4550f080b17c233654cc35eb2272 287 SUPERFAMILY SSF82689 174 271 2.62E-23 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BMD_1313 05cb4550f080b17c233654cc35eb2272 287 Gene3D G3DSA:3.30.70.100 176 263 3.4E-30 T 13-10-2018 BMD_1313 05cb4550f080b17c233654cc35eb2272 287 Pfam PF00924 Mechanosensitive ion channel 68 265 4.6E-48 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BMD_1313 05cb4550f080b17c233654cc35eb2272 287 SUPERFAMILY SSF82861 27 109 4.58E-14 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BMD_1313 05cb4550f080b17c233654cc35eb2272 287 Gene3D G3DSA:2.30.30.60 126 175 1.1E-20 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BMD_1313 05cb4550f080b17c233654cc35eb2272 287 SUPERFAMILY SSF50182 111 169 2.42E-13 T 13-10-2018 IPR010920 LSM domain superfamily BMD_4492 9609706bbfe63749a866c6de084e66cc 188 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 2 179 8.9E-57 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BMD_4492 9609706bbfe63749a866c6de084e66cc 188 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 2 179 9.2E-48 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BMD_4492 9609706bbfe63749a866c6de084e66cc 188 PIRSF PIRSF006806 1 182 1.6E-50 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BMD_4492 9609706bbfe63749a866c6de084e66cc 188 Gene3D G3DSA:3.40.50.10420 1 188 1.6E-64 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily BMD_4492 9609706bbfe63749a866c6de084e66cc 188 SUPERFAMILY SSF100950 2 185 1.95E-53 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_5138 0b0d7a7e8687398982b9a8b120e9170a 172 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 22 168 1.1E-42 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 BMD_5138 0b0d7a7e8687398982b9a8b120e9170a 172 Pfam PF00430 ATP synthase B/B' CF(0) 19 149 1.5E-35 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BMD_5138 0b0d7a7e8687398982b9a8b120e9170a 172 Hamap MF_01398 ATP synthase subunit b [atpF]. 13 150 13.984 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BMD_5138 0b0d7a7e8687398982b9a8b120e9170a 172 SUPERFAMILY SSF81573 75 133 6.41E-8 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily BMD_3538 923afcb439c05033070d4c2a71c5412a 85 Pfam PF04023 FeoA domain 8 78 1.1E-18 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BMD_3538 923afcb439c05033070d4c2a71c5412a 85 SUPERFAMILY SSF50037 12 80 3.89E-18 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal BMD_3538 923afcb439c05033070d4c2a71c5412a 85 Gene3D G3DSA:2.30.30.90 4 85 5.8E-23 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain BMD_3538 923afcb439c05033070d4c2a71c5412a 85 SMART SM00899 7 79 5.9E-20 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BMD_0116 6c2c1194f2c94cb2a6791876d570c84f 169 Pfam PF05991 YacP-like NYN domain 4 166 7.3E-58 T 13-10-2018 IPR010298 Protein of unknown function DUF901 BMD_2493 1b94777eb28d2f9232e1ca7b52034d0b 185 Gene3D G3DSA:1.10.260.40 1 79 1.1E-18 T 13-10-2018 BMD_2493 1b94777eb28d2f9232e1ca7b52034d0b 185 Gene3D G3DSA:2.60.120.10 92 185 1.4E-20 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_2493 1b94777eb28d2f9232e1ca7b52034d0b 185 SUPERFAMILY SSF51182 72 182 1.39E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_2493 1b94777eb28d2f9232e1ca7b52034d0b 185 Pfam PF01381 Helix-turn-helix 14 68 6.1E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_2493 1b94777eb28d2f9232e1ca7b52034d0b 185 Pfam PF07883 Cupin domain 120 177 4.7E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_2493 1b94777eb28d2f9232e1ca7b52034d0b 185 SUPERFAMILY SSF47413 5 72 8.31E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2493 1b94777eb28d2f9232e1ca7b52034d0b 185 SMART SM00530 13 68 3.9E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 64 358 7.2E-91 T 13-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 SUPERFAMILY SSF55604 434 506 1.7E-20 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 536 658 1.1E-53 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 406 491 7.0E-24 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 Gene3D G3DSA:3.30.1360.60 428 508 3.1E-27 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 Pfam PF00367 phosphotransferase system, EIIB 435 467 8.4E-12 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 Gene3D G3DSA:2.70.70.10 525 684 1.4E-63 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 507 8.2E-254 T 13-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 599 611 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 SUPERFAMILY SSF51261 534 679 3.31E-55 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 445 462 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 537 657 2.2E-48 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_1282 334beacfea994677d1b09ab1325b3a2a 684 Pfam PF02378 Phosphotransferase system, EIIC 13 347 6.2E-95 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_2031 ead984acda8a047a7e3dc6974fb43584 621 SUPERFAMILY SSF53955 40 180 2.38E-8 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily BMD_2031 ead984acda8a047a7e3dc6974fb43584 621 SUPERFAMILY SSF55846 266 409 2.09E-35 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BMD_2031 ead984acda8a047a7e3dc6974fb43584 621 SMART SM00644 261 397 9.8E-41 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BMD_2031 ead984acda8a047a7e3dc6974fb43584 621 Gene3D G3DSA:1.10.530.10 50 211 3.5E-16 T 13-10-2018 BMD_2031 ead984acda8a047a7e3dc6974fb43584 621 Gene3D G3DSA:3.40.80.10 253 417 1.1E-39 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BMD_2031 ead984acda8a047a7e3dc6974fb43584 621 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 268 398 8.4E-27 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BMD_2031 ead984acda8a047a7e3dc6974fb43584 621 Pfam PF01464 Transglycosylase SLT domain 52 181 1.6E-5 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 BMD_5062 e9e5dddfd52ad8bc3906813e82870fc5 277 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 136 148 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BMD_5062 e9e5dddfd52ad8bc3906813e82870fc5 277 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 7 266 9.0E-85 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BMD_5062 e9e5dddfd52ad8bc3906813e82870fc5 277 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 7 261 17.889 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BMD_5062 e9e5dddfd52ad8bc3906813e82870fc5 277 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 11 256 3.3E-79 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BMD_0301 ab258d5ab5ed211bc1f7c2f4a1382ceb 76 Pfam PF12728 Helix-turn-helix domain 2 50 3.4E-8 T 13-10-2018 BMD_0301 ab258d5ab5ed211bc1f7c2f4a1382ceb 76 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 2 50 2.6E-16 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 BMD_0301 ab258d5ab5ed211bc1f7c2f4a1382ceb 76 Gene3D G3DSA:1.10.1660.40 2 46 4.1E-5 T 13-10-2018 IPR038148 Transposon Tn1545/Tn916, excisionase BMD_3630 a07798be01606bc4f7af48b37603efc6 378 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BMD_3630 a07798be01606bc4f7af48b37603efc6 378 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 139 1.7E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_3630 a07798be01606bc4f7af48b37603efc6 378 Gene3D G3DSA:3.40.50.720 169 338 1.2E-128 T 13-10-2018 BMD_3630 a07798be01606bc4f7af48b37603efc6 378 SUPERFAMILY SSF50129 1 186 3.2E-60 T 13-10-2018 IPR011032 GroES-like superfamily BMD_3630 a07798be01606bc4f7af48b37603efc6 378 Pfam PF00107 Zinc-binding dehydrogenase 189 257 1.5E-8 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_3630 a07798be01606bc4f7af48b37603efc6 378 Gene3D G3DSA:3.90.180.10 4 365 1.2E-128 T 13-10-2018 BMD_3630 a07798be01606bc4f7af48b37603efc6 378 SUPERFAMILY SSF51735 156 340 9.49E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3630 a07798be01606bc4f7af48b37603efc6 378 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 8.9E-12 T 13-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated BMD_2286 2d5a20d31c6981afd39bb146308eb8df 246 SUPERFAMILY SSF56300 1 233 4.41E-50 T 13-10-2018 BMD_2286 2d5a20d31c6981afd39bb146308eb8df 246 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 3 194 1.9E-24 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 BMD_2286 2d5a20d31c6981afd39bb146308eb8df 246 Gene3D G3DSA:3.60.21.10 1 246 5.9E-63 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_2286 2d5a20d31c6981afd39bb146308eb8df 246 PIRSF PIRSF000883 2 243 2.2E-56 T 13-10-2018 IPR011152 Phosphoesterase MJ0912 BMD_4433 18d77118a99641bc0332545a1bdf57da 50 Pfam PF14174 YycC-like protein 1 49 5.6E-28 T 13-10-2018 IPR025550 YycC-like protein BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 296 319 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 Gene3D G3DSA:1.10.3860.10 1 419 2.8E-132 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 Pfam PF00375 Sodium:dicarboxylate symporter family 6 401 9.1E-123 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 9.9E-44 T 13-10-2018 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 9.9E-44 T 13-10-2018 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 9.9E-44 T 13-10-2018 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 9.9E-44 T 13-10-2018 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 9.9E-44 T 13-10-2018 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 PRINTS PR00173 Glutamate-aspartate symporter signature 355 375 9.9E-44 T 13-10-2018 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 9.9E-44 T 13-10-2018 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 SUPERFAMILY SSF118215 6 402 8.5E-125 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_1777 aabd43abbec9421eebf2a1d3830068a9 423 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_3700 26bb1ef55d962a6b805290abe6c64c9a 400 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 375 1.7E-112 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_3700 26bb1ef55d962a6b805290abe6c64c9a 400 Gene3D G3DSA:3.40.50.1970 1 185 5.3E-57 T 13-10-2018 BMD_3700 26bb1ef55d962a6b805290abe6c64c9a 400 SUPERFAMILY SSF56796 3 386 1.96E-117 T 13-10-2018 BMD_3700 26bb1ef55d962a6b805290abe6c64c9a 400 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_3700 26bb1ef55d962a6b805290abe6c64c9a 400 Gene3D G3DSA:1.20.1090.10 187 385 6.1E-61 T 13-10-2018 BMD_2998 0e9f2d726985556f8c9f8e42c8cfa4da 236 Gene3D G3DSA:3.20.20.370 18 236 4.9E-56 T 13-10-2018 BMD_2998 0e9f2d726985556f8c9f8e42c8cfa4da 236 Pfam PF01522 Polysaccharide deacetylase 38 152 2.7E-28 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_2998 0e9f2d726985556f8c9f8e42c8cfa4da 236 SUPERFAMILY SSF88713 18 234 8.65E-54 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_2457 638e91e735664cf3ae3e8ac44fec5285 99 SUPERFAMILY SSF89360 2 80 9.22E-8 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_2457 638e91e735664cf3ae3e8ac44fec5285 99 Gene3D G3DSA:2.60.300.12 1 97 1.9E-8 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 103 1.1E-43 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 Gene3D G3DSA:3.30.300.10 13 284 2.4E-182 T 13-10-2018 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 273 281 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 Gene3D G3DSA:3.30.300.10 104 389 2.4E-182 T 13-10-2018 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 PIRSF PIRSF000497 1 398 5.4E-181 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 SUPERFAMILY SSF55973 247 395 1.73E-70 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 7 395 7.3E-189 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 Gene3D G3DSA:3.30.300.10 7 247 2.4E-182 T 13-10-2018 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 Pfam PF02772 S-adenosylmethionine synthetase, central domain 128 245 5.3E-51 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 397 60.011 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 129 139 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 SUPERFAMILY SSF55973 125 246 2.39E-54 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 247 385 1.8E-70 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_4847 dd8c07f9edcbd5c81ad9dae54a528eb6 400 SUPERFAMILY SSF55973 5 111 3.14E-47 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BMD_3002 2145e79a966b79fd94242d3533c4df40 305 SUPERFAMILY SSF103481 197 285 3.66E-11 T 13-10-2018 BMD_3002 2145e79a966b79fd94242d3533c4df40 305 Pfam PF00892 EamA-like transporter family 154 284 1.4E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3002 2145e79a966b79fd94242d3533c4df40 305 Pfam PF00892 EamA-like transporter family 9 139 4.3E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3002 2145e79a966b79fd94242d3533c4df40 305 SUPERFAMILY SSF103481 46 142 1.31E-9 T 13-10-2018 BMD_4391 8486a36617f0098313fc838a41fac55b 222 Pfam PF01144 Coenzyme A transferase 10 205 2.0E-44 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4391 8486a36617f0098313fc838a41fac55b 222 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 48 56 - T 13-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 BMD_4391 8486a36617f0098313fc838a41fac55b 222 SUPERFAMILY SSF100950 7 218 5.44E-73 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_4391 8486a36617f0098313fc838a41fac55b 222 Gene3D G3DSA:3.40.1080.10 5 218 4.5E-102 T 13-10-2018 BMD_4391 8486a36617f0098313fc838a41fac55b 222 SMART SM00882 10 206 5.1E-76 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4391 8486a36617f0098313fc838a41fac55b 222 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 8 212 5.2E-98 T 13-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 BMD_0364 78292d7f0cd71a38e202ba24fbcebefa 71 Pfam PF11121 Protein of unknown function (DUF2639) 30 66 2.6E-22 T 13-10-2018 IPR022580 Protein of unknown function DUF2639 BMD_0364 78292d7f0cd71a38e202ba24fbcebefa 71 ProDom PD049467 YFLJ 29 70 5.0E-11 T 13-10-2018 IPR022580 Protein of unknown function DUF2639 BMD_5167 e9deae3f6234ae567c5b5bf26f01ddba 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 66 2.6E-14 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5167 e9deae3f6234ae567c5b5bf26f01ddba 214 SUPERFAMILY SSF46689 18 89 1.35E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_5167 e9deae3f6234ae567c5b5bf26f01ddba 214 SUPERFAMILY SSF48498 93 201 5.11E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_5167 e9deae3f6234ae567c5b5bf26f01ddba 214 Gene3D G3DSA:1.10.357.10 60 204 5.0E-15 T 13-10-2018 BMD_5167 e9deae3f6234ae567c5b5bf26f01ddba 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 4.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5167 e9deae3f6234ae567c5b5bf26f01ddba 214 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 4.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_5167 e9deae3f6234ae567c5b5bf26f01ddba 214 Gene3D G3DSA:1.10.10.60 16 59 5.6E-17 T 13-10-2018 BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 55 284 1.3E-59 T 13-10-2018 BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 SUPERFAMILY SSF51735 44 285 2.84E-80 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 174 182 1.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 194 213 1.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 133 1.1E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 181 209 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 Gene3D G3DSA:3.40.50.720 2 287 3.2E-88 T 13-10-2018 BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 213 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 133 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 249 269 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 232 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3493 bc114b81300fdcfaa8ebef4535401db8 289 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 47 64 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0016 8b15807d2616fe4eaaddec8dad1a05a6 195 Pfam PF01174 SNO glutamine amidotransferase family 6 188 2.2E-74 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0016 8b15807d2616fe4eaaddec8dad1a05a6 195 ProSitePatterns PS01236 PdxT/SNO family family signature. 41 51 - T 13-10-2018 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0016 8b15807d2616fe4eaaddec8dad1a05a6 195 SUPERFAMILY SSF52317 2 189 8.2E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0016 8b15807d2616fe4eaaddec8dad1a05a6 195 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 186 37.986 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0016 8b15807d2616fe4eaaddec8dad1a05a6 195 PIRSF PIRSF005639 1 191 4.9E-75 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_0016 8b15807d2616fe4eaaddec8dad1a05a6 195 Gene3D G3DSA:3.40.50.880 1 194 2.5E-73 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0016 8b15807d2616fe4eaaddec8dad1a05a6 195 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 3 184 4.1E-85 T 13-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 BMD_2106 63fd4d77b578b8d11834d76e45ddfbaa 322 Pfam PF01261 Xylose isomerase-like TIM barrel 19 236 6.3E-32 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_2106 63fd4d77b578b8d11834d76e45ddfbaa 322 SUPERFAMILY SSF51658 1 311 2.36E-52 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_2106 63fd4d77b578b8d11834d76e45ddfbaa 322 Gene3D G3DSA:3.20.20.150 1 315 7.3E-73 T 13-10-2018 BMD_2106 63fd4d77b578b8d11834d76e45ddfbaa 322 Pfam PF07582 AP endonuclease family 2 C terminus 268 322 1.4E-22 T 13-10-2018 IPR011418 AP endonuclease, family 2, C-terminal BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 SUPERFAMILY SSF47413 7 65 4.74E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 SUPERFAMILY SSF48452 132 278 1.06E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 Pfam PF13181 Tetratricopeptide repeat 242 269 0.0098 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 Pfam PF13181 Tetratricopeptide repeat 202 230 0.041 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 SMART SM00028 158 191 200.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 SMART SM00028 241 274 0.11 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 SMART SM00028 116 149 290.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 SMART SM00028 201 234 5.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2264 2dd3d8d70f37877d14ce655a8e4b3ee2 297 Gene3D G3DSA:1.25.40.10 3 297 3.1E-79 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_2119 1d29c7db5ced804cddfeab833c3a2ece 152 Pfam PF01381 Helix-turn-helix 16 50 1.3E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_2119 1d29c7db5ced804cddfeab833c3a2ece 152 Gene3D G3DSA:1.10.260.40 2 72 1.3E-10 T 13-10-2018 BMD_2119 1d29c7db5ced804cddfeab833c3a2ece 152 SUPERFAMILY SSF47413 9 64 1.56E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2119 1d29c7db5ced804cddfeab833c3a2ece 152 SMART SM00530 15 69 8.8E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_4453 959c4fce774a87ac553bf359d8b4436d 127 Pfam PF06686 Stage III sporulation protein AC/AD protein family 1 55 3.0E-12 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family BMD_4453 959c4fce774a87ac553bf359d8b4436d 127 Pfam PF06686 Stage III sporulation protein AC/AD protein family 69 124 4.9E-19 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family BMD_4453 959c4fce774a87ac553bf359d8b4436d 127 TIGRFAM TIGR02849 spore_III_AD: stage III sporulation protein AD 25 125 1.5E-36 T 13-10-2018 IPR014211 Stage III sporulation protein AD BMD_3172 47fb45df9ffa2bbf3cff374ea925bb58 185 Pfam PF14595 Thioredoxin 12 135 7.7E-36 T 13-10-2018 BMD_3172 47fb45df9ffa2bbf3cff374ea925bb58 185 SUPERFAMILY SSF52833 39 138 9.62E-10 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_3172 47fb45df9ffa2bbf3cff374ea925bb58 185 Gene3D G3DSA:3.40.30.10 1 156 1.3E-14 T 13-10-2018 BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 79 3.2E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 SUPERFAMILY SSF46785 9 88 4.54E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 Pfam PF00155 Aminotransferase class I and II 120 457 5.0E-16 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 Gene3D G3DSA:3.40.640.10 95 458 2.6E-125 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 SUPERFAMILY SSF53383 89 464 1.63E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 Gene3D G3DSA:1.10.10.10 4 89 3.4E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 SMART SM00345 20 79 2.1E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 7.0E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3948 bf659bcc9fb03be48ac78afb2c26e02c 467 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 7.0E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.1E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 Pfam PF03466 LysR substrate binding domain 88 290 7.2E-46 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 SUPERFAMILY SSF53850 88 296 5.16E-41 T 13-10-2018 BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 Gene3D G3DSA:3.40.190.290 90 297 3.5E-53 T 13-10-2018 BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 Gene3D G3DSA:1.10.10.10 1 84 3.7E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2054 5d456e574c6f62709d0359e7bda74cce 300 SUPERFAMILY SSF46785 1 84 2.08E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1461 d727be1c2825dda8670afcb70b3492af 314 Gene3D G3DSA:3.40.50.10740 1 158 1.4E-59 T 13-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal BMD_1461 d727be1c2825dda8670afcb70b3492af 314 Gene3D G3DSA:3.50.30.60 166 299 8.8E-43 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily BMD_1461 d727be1c2825dda8670afcb70b3492af 314 Pfam PF02016 LD-carboxypeptidase 13 291 1.6E-84 T 13-10-2018 IPR003507 Peptidase family S66 BMD_1461 d727be1c2825dda8670afcb70b3492af 314 PIRSF PIRSF028757 1 304 1.5E-95 T 13-10-2018 IPR003507 Peptidase family S66 BMD_1461 d727be1c2825dda8670afcb70b3492af 314 SUPERFAMILY SSF52317 1 158 1.97E-53 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1461 d727be1c2825dda8670afcb70b3492af 314 SUPERFAMILY SSF141986 143 296 7.06E-42 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 Gene3D G3DSA:1.10.10.60 394 452 3.5E-6 T 13-10-2018 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 Pfam PF00158 Sigma-54 interaction domain 151 319 6.0E-67 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 SUPERFAMILY SSF52540 151 391 5.81E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 175 188 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 Pfam PF13426 PAS domain 26 120 4.8E-7 T 13-10-2018 IPR000014 PAS domain BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 Gene3D G3DSA:3.40.50.300 136 323 1.4E-65 T 13-10-2018 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 SMART SM00382 171 315 9.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 SUPERFAMILY SSF46689 403 449 1.33E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 SUPERFAMILY SSF55785 8 119 3.49E-11 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 Gene3D G3DSA:1.10.8.60 324 393 1.0E-19 T 13-10-2018 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 SMART SM00091 13 81 0.0087 T 13-10-2018 IPR000014 PAS domain BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 Gene3D G3DSA:3.30.450.20 4 130 3.9E-15 T 13-10-2018 BMD_4062 402dbc2af0aaaf750418602418ec2e19 456 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 17 126 6.7E-6 T 13-10-2018 IPR000014 PAS domain BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 Hamap MF_00318 Enolase [eno]. 2 414 46.447 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 Gene3D G3DSA:3.30.390.10 1 127 4.6E-61 T 13-10-2018 IPR029017 Enolase-like, N-terminal BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 SUPERFAMILY SSF51604 138 428 1.29E-131 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 PRINTS PR00148 Enolase signature 37 51 5.9E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 PRINTS PR00148 Enolase signature 314 325 5.9E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 PRINTS PR00148 Enolase signature 366 383 5.9E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 PRINTS PR00148 Enolase signature 107 123 5.9E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 PRINTS PR00148 Enolase signature 337 351 5.9E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 PRINTS PR00148 Enolase signature 161 174 5.9E-47 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 PIRSF PIRSF001400 1 428 6.6E-197 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 Gene3D G3DSA:3.20.20.120 128 431 1.8E-138 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 ProSitePatterns PS00164 Enolase signature. 337 350 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 427 1.5E-141 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 5.6E-218 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 SMART SM01192 139 428 3.3E-224 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 Pfam PF03952 Enolase, N-terminal domain 4 134 1.1E-63 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 SMART SM01193 4 134 2.7E-104 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5034 0d8cfb500541d1447635e73ea65b5484 431 SUPERFAMILY SSF54826 3 138 2.06E-62 T 13-10-2018 BMD_4977 fbeabb70fb3d39183c6a79027a06248e 144 SUPERFAMILY SSF82649 2 142 9.72E-53 T 13-10-2018 BMD_4977 fbeabb70fb3d39183c6a79027a06248e 144 Pfam PF01592 NifU-like N terminal domain 10 128 3.3E-36 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 BMD_4977 fbeabb70fb3d39183c6a79027a06248e 144 Gene3D G3DSA:3.90.1010.10 2 144 1.3E-60 T 13-10-2018 BMD_4977 fbeabb70fb3d39183c6a79027a06248e 144 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 6 140 2.6E-59 T 13-10-2018 BMD_0025 75cc9a1fc521153d16e08d5127710bf5 106 Pfam PF02575 YbaB/EbfC DNA-binding family 12 102 7.1E-36 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BMD_0025 75cc9a1fc521153d16e08d5127710bf5 106 Gene3D G3DSA:3.30.1310.10 2 106 1.2E-39 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily BMD_0025 75cc9a1fc521153d16e08d5127710bf5 106 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 106 9.2E-33 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BMD_0025 75cc9a1fc521153d16e08d5127710bf5 106 SUPERFAMILY SSF82607 12 106 4.84E-35 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily BMD_0025 75cc9a1fc521153d16e08d5127710bf5 106 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 6 100 23.271 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BMD_0025 75cc9a1fc521153d16e08d5127710bf5 106 PIRSF PIRSF004555 4 106 5.4E-40 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SMART SM00388 250 313 2.2E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SUPERFAMILY SSF55785 2 52 5.23E-5 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 252 309 1.7E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Gene3D G3DSA:3.30.450.20 118 237 3.2E-17 T 13-10-2018 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SMART SM00387 355 460 3.8E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Pfam PF00989 PAS fold 124 231 3.1E-11 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 121 240 6.7E-16 T 13-10-2018 IPR000014 PAS domain BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 457 6.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 6.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 419 6.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 6.4E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SUPERFAMILY SSF55874 305 458 7.99E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SUPERFAMILY SSF47384 245 310 3.53E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SUPERFAMILY SSF55785 114 233 4.89E-16 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SMART SM00091 123 189 8.3E-10 T 13-10-2018 IPR000014 PAS domain BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 SMART SM00091 5 72 51.0 T 13-10-2018 IPR000014 PAS domain BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Gene3D G3DSA:1.10.287.130 253 306 4.9E-18 T 13-10-2018 BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Pfam PF13426 PAS domain 17 94 0.41 T 13-10-2018 IPR000014 PAS domain BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Gene3D G3DSA:3.30.565.10 307 458 1.1E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 457 2.7E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4033 e8055d175b1a9e3b5580a89f8b6f0c8f 466 Gene3D G3DSA:3.30.450.20 2 110 3.4E-5 T 13-10-2018 BMD_5263 0e343fa073c6181dca0c1c648db98e87 289 SMART SM00470 25 114 1.2E-33 T 13-10-2018 IPR003115 ParB/Sulfiredoxin BMD_5263 0e343fa073c6181dca0c1c648db98e87 289 Gene3D G3DSA:3.90.1530.30 38 100 3.3E-25 T 13-10-2018 BMD_5263 0e343fa073c6181dca0c1c648db98e87 289 Gene3D G3DSA:1.10.10.2830 101 214 2.1E-36 T 13-10-2018 BMD_5263 0e343fa073c6181dca0c1c648db98e87 289 Pfam PF02195 ParB-like nuclease domain 26 113 1.8E-26 T 13-10-2018 IPR003115 ParB/Sulfiredoxin BMD_5263 0e343fa073c6181dca0c1c648db98e87 289 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 24 189 3.1E-62 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 BMD_5263 0e343fa073c6181dca0c1c648db98e87 289 SUPERFAMILY SSF110849 25 116 3.66E-27 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily BMD_5263 0e343fa073c6181dca0c1c648db98e87 289 SUPERFAMILY SSF109709 106 216 1.94E-33 T 13-10-2018 BMD_4343 a994ca92155e94ced379df4b78d771a9 255 Pfam PF00149 Calcineurin-like phosphoesterase 45 200 1.0E-10 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_4343 a994ca92155e94ced379df4b78d771a9 255 Gene3D G3DSA:3.60.21.10 42 226 2.2E-18 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_4343 a994ca92155e94ced379df4b78d771a9 255 SUPERFAMILY SSF56300 41 253 7.21E-30 T 13-10-2018 BMD_0610 e1f363317a115d7e5fbda8f1b27d2075 243 SMART SM00849 18 211 1.7E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_0610 e1f363317a115d7e5fbda8f1b27d2075 243 Pfam PF12706 Beta-lactamase superfamily domain 31 211 1.8E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_0610 e1f363317a115d7e5fbda8f1b27d2075 243 SUPERFAMILY SSF56281 1 242 5.37E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_0610 e1f363317a115d7e5fbda8f1b27d2075 243 Gene3D G3DSA:3.60.15.10 1 243 3.0E-87 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 200 36.579 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 SMART SM00363 92 156 7.8E-22 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 SUPERFAMILY SSF55174 2 200 4.19E-71 T 13-10-2018 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 Gene3D G3DSA:1.10.1050.10 6 200 4.0E-76 T 13-10-2018 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 SMART SM01390 3 91 3.0E-45 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 200 2.5E-86 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 ProSitePatterns PS00632 Ribosomal protein S4 signature. 90 114 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 Gene3D G3DSA:3.10.290.10 91 185 4.0E-76 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 Pfam PF01479 S4 domain 93 139 1.0E-22 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4796 b23e0a8231ea408b2372f718d928f2a9 200 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 91 5.0E-28 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 BMD_3587 1ccd5cbae1b1d6c8a36153b3abaed63d 464 Gene3D G3DSA:1.20.1250.20 242 454 3.2E-11 T 13-10-2018 BMD_3587 1ccd5cbae1b1d6c8a36153b3abaed63d 464 Gene3D G3DSA:1.20.1250.20 32 233 8.4E-16 T 13-10-2018 BMD_3587 1ccd5cbae1b1d6c8a36153b3abaed63d 464 SUPERFAMILY SSF103473 26 447 1.27E-40 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3587 1ccd5cbae1b1d6c8a36153b3abaed63d 464 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 80 105 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 BMD_3587 1ccd5cbae1b1d6c8a36153b3abaed63d 464 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 29 462 4.1E-146 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 BMD_3587 1ccd5cbae1b1d6c8a36153b3abaed63d 464 Pfam PF13347 MFS/sugar transport protein 31 449 2.0E-97 T 13-10-2018 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 67 80 8.3E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 89 105 8.3E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 190 202 8.3E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 159 171 8.3E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 Hamap MF_01974 Methionine aminopeptidase [map]. 2 248 39.064 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 Pfam PF00557 Metallopeptidase family M24 12 239 2.2E-53 T 13-10-2018 IPR000994 Peptidase M24 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 Gene3D G3DSA:3.90.230.10 1 248 1.4E-107 T 13-10-2018 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 SUPERFAMILY SSF55920 1 247 1.07E-86 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 6.8E-93 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0304 53bdfaab52bbb6d0d062dcd255f4c308 248 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 165 183 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_4137 ddbc5ce1bca7e0e72f7020090ac142a6 92 SUPERFAMILY SSF103007 1 92 3.27E-29 T 13-10-2018 IPR036746 TT1725-like superfamily BMD_4137 ddbc5ce1bca7e0e72f7020090ac142a6 92 Gene3D G3DSA:3.30.70.1120 1 91 4.3E-23 T 13-10-2018 IPR036746 TT1725-like superfamily BMD_4137 ddbc5ce1bca7e0e72f7020090ac142a6 92 Pfam PF04456 Protein of unknown function (DUF503) 2 85 9.7E-30 T 13-10-2018 IPR007546 Protein of unknown function DUF503 BMD_4409 25b03c64308eb599625c082391e346ea 426 Gene3D G3DSA:3.20.20.70 4 304 1.5E-100 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4409 25b03c64308eb599625c082391e346ea 426 Pfam PF14697 4Fe-4S dicluster domain 335 397 6.7E-24 T 13-10-2018 BMD_4409 25b03c64308eb599625c082391e346ea 426 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 4 317 5.2E-56 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 BMD_4409 25b03c64308eb599625c082391e346ea 426 SUPERFAMILY SSF54862 335 410 4.65E-14 T 13-10-2018 BMD_4409 25b03c64308eb599625c082391e346ea 426 Pfam PF01180 Dihydroorotate dehydrogenase 83 301 4.6E-30 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 BMD_4409 25b03c64308eb599625c082391e346ea 426 Gene3D G3DSA:3.30.70.20 305 415 4.2E-23 T 13-10-2018 BMD_4409 25b03c64308eb599625c082391e346ea 426 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 379 390 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_4409 25b03c64308eb599625c082391e346ea 426 SUPERFAMILY SSF51395 1 318 4.0E-70 T 13-10-2018 BMD_4568 c06d7a667af07f75046f54b2e6aa152e 190 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 66 9.9E-10 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BMD_4568 c06d7a667af07f75046f54b2e6aa152e 190 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 6 187 3.8E-57 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BMD_4568 c06d7a667af07f75046f54b2e6aa152e 190 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 2 188 31.371 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BMD_4568 c06d7a667af07f75046f54b2e6aa152e 190 SUPERFAMILY SSF52374 2 189 2.16E-54 T 13-10-2018 BMD_4568 c06d7a667af07f75046f54b2e6aa152e 190 Gene3D G3DSA:3.40.50.620 1 188 1.1E-66 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4568 c06d7a667af07f75046f54b2e6aa152e 190 Pfam PF01467 Cytidylyltransferase-like 6 162 7.5E-31 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BMD_1032 34c09a57a0e2fc4937a52952dbaf9f22 222 SUPERFAMILY SSF100950 3 144 5.23E-46 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_1032 34c09a57a0e2fc4937a52952dbaf9f22 222 Gene3D G3DSA:3.30.70.260 119 191 7.9E-86 T 13-10-2018 BMD_1032 34c09a57a0e2fc4937a52952dbaf9f22 222 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 1 220 32.795 T 13-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BMD_1032 34c09a57a0e2fc4937a52952dbaf9f22 222 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 4 215 8.9E-88 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BMD_1032 34c09a57a0e2fc4937a52952dbaf9f22 222 SUPERFAMILY SSF75445 125 203 2.88E-25 T 13-10-2018 BMD_1032 34c09a57a0e2fc4937a52952dbaf9f22 222 Gene3D G3DSA:3.40.50.1360 4 210 7.9E-86 T 13-10-2018 BMD_1032 34c09a57a0e2fc4937a52952dbaf9f22 222 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 48 214 1.4E-68 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 Pfam PF01842 ACT domain 149 210 6.9E-10 T 13-10-2018 IPR002912 ACT domain BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 Gene3D G3DSA:3.30.1330.90 13 136 1.8E-20 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 SUPERFAMILY SSF143548 19 137 5.36E-31 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 Pfam PF03315 Serine dehydratase beta chain 5 72 2.3E-12 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 TIGRFAM TIGR00719 sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit 1 206 1.3E-89 T 13-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 PIRSF PIRSF036692 1 220 2.1E-104 T 13-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 Gene3D G3DSA:3.30.70.260 140 217 8.6E-15 T 13-10-2018 BMD_4214 e9bd40a8d0f9cac8e7a2a2a21439eb4a 220 SUPERFAMILY SSF55021 137 217 4.23E-16 T 13-10-2018 BMD_2063 a05246600d5d76053bd8b783e5754d5a 176 Gene3D G3DSA:3.40.630.30 25 152 1.9E-19 T 13-10-2018 BMD_2063 a05246600d5d76053bd8b783e5754d5a 176 SUPERFAMILY SSF55729 20 154 5.13E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2063 a05246600d5d76053bd8b783e5754d5a 176 Pfam PF13302 Acetyltransferase (GNAT) domain 21 150 3.2E-10 T 13-10-2018 IPR000182 GNAT domain BMD_3564 4b230c4bc6a58aa5e23717ce85d2a497 183 Pfam PF11611 Domain of unknown function (DUF4352) 49 166 9.0E-13 T 13-10-2018 IPR029051 Domain of unknown function DUF4352 BMD_3564 4b230c4bc6a58aa5e23717ce85d2a497 183 Gene3D G3DSA:2.60.40.1240 42 183 1.0E-42 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 SUPERFAMILY SSF56024 14 169 3.66E-25 T 13-10-2018 BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 SUPERFAMILY SSF56024 226 379 6.73E-21 T 13-10-2018 BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 Gene3D G3DSA:3.30.870.10 211 396 1.5E-25 T 13-10-2018 BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 Pfam PF13091 PLD-like domain 247 366 5.1E-15 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 Pfam PF13091 PLD-like domain 15 140 1.1E-16 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 SMART SM00155 98 125 2.7 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 SMART SM00155 318 345 0.02 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_2195 bdaf93042646a34a4dcaf78d46b06cd9 418 Gene3D G3DSA:3.30.870.10 11 189 1.0E-30 T 13-10-2018 BMD_1339 690f1c1fa05e66c2d82092339e401546 61 Pfam PF17259 Family of unknown function (DUF5325) 1 61 1.6E-29 T 13-10-2018 IPR035211 Protein of unknown function DUF5325 BMD_3213 49b381f2c81f29146fb5cfecd9ee63eb 284 Pfam PF05067 Manganese containing catalase 1 275 2.3E-65 T 13-10-2018 IPR007760 Manganese catalase BMD_3213 49b381f2c81f29146fb5cfecd9ee63eb 284 Gene3D G3DSA:1.20.1260.130 5 284 3.9E-102 T 13-10-2018 BMD_3213 49b381f2c81f29146fb5cfecd9ee63eb 284 SUPERFAMILY SSF47240 1 283 4.4E-84 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 SUPERFAMILY SSF64288 61 240 1.3E-58 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 1.4E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 3.9E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 3.9E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 SMART SM00345 14 73 1.2E-23 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 Pfam PF07702 UTRA domain 94 233 5.0E-45 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 SUPERFAMILY SSF46785 2 86 7.34E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 SMART SM00866 94 233 2.0E-48 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 Gene3D G3DSA:3.40.1410.10 77 241 1.9E-58 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_1158 d88e1ae7c39813038f83817a5e54c64e 241 Gene3D G3DSA:1.10.10.10 8 76 2.6E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4930 52c0e8d46dc3393aa7205fa806787a77 120 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 12 107 8.0E-30 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 BMD_4930 52c0e8d46dc3393aa7205fa806787a77 120 Pfam PF03334 Na+/H+ antiporter subunit 12 93 2.4E-27 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 BMD_3262 b9c72af14f532216febe1083ffaabaf9 114 ProDom PD067392 MEMBRANE UPF0344 TRANSMEMBRANE MW0851 BCE1257 SIMILAR YISL SAR0931 BCE33L1051 BT9727_1053 12 92 0.003 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 BMD_3262 b9c72af14f532216febe1083ffaabaf9 114 Pfam PF07457 Protein of unknown function (DUF1516) 12 106 6.7E-11 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 BMD_3596 755f64e3def8705cc371f2ca68d469c3 198 SUPERFAMILY SSF159888 10 128 4.05E-21 T 13-10-2018 BMD_3596 755f64e3def8705cc371f2ca68d469c3 198 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 134 193 4.2E-18 T 13-10-2018 BMD_3596 755f64e3def8705cc371f2ca68d469c3 198 PIRSF PIRSF021308 2 198 3.3E-94 T 13-10-2018 IPR016786 Uncharacterised protein YdeI, bacterial BMD_3596 755f64e3def8705cc371f2ca68d469c3 198 Pfam PF08818 Domain of unknown function (DU1801) 21 118 2.5E-14 T 13-10-2018 IPR014922 Domain of unknown function DUF1801 BMD_5072 e0ac3a1a75b78708d3cd5a9013a11d18 74 Pfam PF09964 Uncharacterized protein conserved in bacteria (DUF2198) 4 71 2.4E-23 T 13-10-2018 IPR019242 Protein of unknown function DUF2198 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 PRINTS PR00139 Asparaginase/glutaminase family signature 80 98 1.1E-14 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 1.1E-14 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 PRINTS PR00139 Asparaginase/glutaminase family signature 253 271 1.1E-14 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 SMART SM00870 3 318 6.0E-134 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 Gene3D G3DSA:3.40.50.40 208 323 2.7E-29 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 PIRSF PIRSF001220 1 323 5.4E-92 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 81 91 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 6 14 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 PIRSF PIRSF500176 1 323 2.3E-92 T 13-10-2018 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 Pfam PF00710 Asparaginase, N-terminal 4 191 4.2E-58 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 Gene3D G3DSA:3.40.50.1170 1 207 1.3E-66 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 BMD_4338 52232906fd5d1fc363ae3c38518c100f 323 SUPERFAMILY SSF53774 1 322 6.28E-99 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 11 216 2.4E-29 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 Pfam PF08282 haloacid dehalogenase-like hydrolase 145 243 1.6E-30 T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 Pfam PF08282 haloacid dehalogenase-like hydrolase 12 128 6.8E-30 T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 Gene3D G3DSA:3.40.50.1000 10 88 3.4E-32 T 13-10-2018 IPR023214 HAD superfamily BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 197 216 3.9E-5 T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 13 27 3.9E-5 T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 220 232 3.9E-5 T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 ProSitePatterns PS01228 Hypothetical cof family signature 1. 11 22 - T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 SUPERFAMILY SSF56784 6 248 1.04E-68 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 ProSitePatterns PS01229 Hypothetical cof family signature 2. 197 219 - T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 Gene3D G3DSA:3.40.50.1000 142 249 1.4E-28 T 13-10-2018 IPR023214 HAD superfamily BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 TIGRFAM TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily 12 244 5.1E-32 T 13-10-2018 BMD_1929 5ba7141ffdc4d1dbf70aacfab877dcc5 249 Gene3D G3DSA:3.30.1240.10 89 130 3.4E-32 T 13-10-2018 BMD_3392 dd401919b5d63893f921c16345aecdd2 207 SUPERFAMILY SSF50475 13 180 7.85E-35 T 13-10-2018 BMD_3392 dd401919b5d63893f921c16345aecdd2 207 Pfam PF04299 Putative FMN-binding domain 1 158 1.6E-52 T 13-10-2018 IPR007396 Transcriptional regulator PAI 2-type BMD_3392 dd401919b5d63893f921c16345aecdd2 207 Gene3D G3DSA:2.30.110.10 1 202 2.0E-74 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BMD_3392 dd401919b5d63893f921c16345aecdd2 207 PIRSF PIRSF010372 1 203 2.2E-62 T 13-10-2018 IPR007396 Transcriptional regulator PAI 2-type BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 SMART SM00382 368 554 3.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 SUPERFAMILY SSF52540 338 578 6.92E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 Gene3D G3DSA:1.20.1560.10 2 328 3.4E-82 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 Pfam PF00005 ABC transporter 359 508 9.1E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 Gene3D G3DSA:3.40.50.300 334 594 9.1E-90 T 13-10-2018 BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 Pfam PF00664 ABC transporter transmembrane region 24 296 4.9E-40 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 SUPERFAMILY SSF90123 10 325 1.7E-76 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_4069 67c29b82a33f5aeb420fdcfcfdf05e57 601 ProSitePatterns PS00211 ABC transporters family signature. 480 494 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1651 a97003002df93e7081afb5977eb86478 500 PIRSF PIRSF005690 19 500 2.6E-172 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_1651 a97003002df93e7081afb5977eb86478 500 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 33 496 3.2E-177 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_2342 447e1687c2ff70f40639c38f207cc658 248 SUPERFAMILY SSF56281 2 239 3.41E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2342 447e1687c2ff70f40639c38f207cc658 248 Gene3D G3DSA:3.60.15.10 5 248 5.3E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2342 447e1687c2ff70f40639c38f207cc658 248 SMART SM00849 22 224 7.6E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2342 447e1687c2ff70f40639c38f207cc658 248 Pfam PF00753 Metallo-beta-lactamase superfamily 24 194 5.5E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4928 e4f11bc9371df8e92757464e1e1a973c 158 PIRSF PIRSF019239 1 158 2.7E-44 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 BMD_4928 e4f11bc9371df8e92757464e1e1a973c 158 Pfam PF01899 Na+/H+ ion antiporter subunit 9 156 3.5E-42 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 BMD_0855 8c0fdf5ae425b27614ffced7da12af17 322 Gene3D G3DSA:3.40.190.10 123 249 5.5E-59 T 13-10-2018 BMD_0855 8c0fdf5ae425b27614ffced7da12af17 322 PIRSF PIRSF017082 1 320 1.3E-87 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 BMD_0855 8c0fdf5ae425b27614ffced7da12af17 322 SUPERFAMILY SSF53850 37 289 9.51E-9 T 13-10-2018 BMD_0855 8c0fdf5ae425b27614ffced7da12af17 322 Gene3D G3DSA:3.40.190.150 30 313 5.5E-59 T 13-10-2018 BMD_0855 8c0fdf5ae425b27614ffced7da12af17 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 59 315 2.4E-22 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 BMD_4349 5f28ccb3a5d3e4a89b173f2b8d6b1e7c 82 SUPERFAMILY SSF54862 3 72 5.09E-15 T 13-10-2018 BMD_4349 5f28ccb3a5d3e4a89b173f2b8d6b1e7c 82 PRINTS PR00352 3Fe-4S ferredoxin signature 7 18 2.2E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_4349 5f28ccb3a5d3e4a89b173f2b8d6b1e7c 82 PRINTS PR00352 3Fe-4S ferredoxin signature 55 67 2.2E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_4349 5f28ccb3a5d3e4a89b173f2b8d6b1e7c 82 PRINTS PR00352 3Fe-4S ferredoxin signature 18 28 2.2E-8 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_4349 5f28ccb3a5d3e4a89b173f2b8d6b1e7c 82 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 7 69 2.2E-22 T 13-10-2018 BMD_4349 5f28ccb3a5d3e4a89b173f2b8d6b1e7c 82 Gene3D G3DSA:3.30.70.20 2 82 4.8E-35 T 13-10-2018 BMD_0095 aa356fb1877caf4051000c8be6b615a1 287 Pfam PF01063 Amino-transferase class IV 29 252 1.5E-58 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 BMD_0095 aa356fb1877caf4051000c8be6b615a1 287 ProSitePatterns PS00770 Aminotransferases class-IV signature. 178 207 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 BMD_0095 aa356fb1877caf4051000c8be6b615a1 287 Gene3D G3DSA:3.20.10.10 125 275 7.6E-45 T 13-10-2018 BMD_0095 aa356fb1877caf4051000c8be6b615a1 287 Gene3D G3DSA:3.30.470.10 1 123 2.6E-36 T 13-10-2018 BMD_0095 aa356fb1877caf4051000c8be6b615a1 287 SUPERFAMILY SSF56752 1 274 1.57E-75 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 BMD_3475 1c18c9383e336e5dd785b33f40c304a8 50 Pfam PF09388 Spo0E like sporulation regulatory protein 4 44 2.3E-11 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 BMD_3475 1c18c9383e336e5dd785b33f40c304a8 50 Gene3D G3DSA:1.20.58.990 1 50 8.0E-9 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_3475 1c18c9383e336e5dd785b33f40c304a8 50 SUPERFAMILY SSF140500 2 47 2.49E-11 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_3626 693fce48a748771df483fccbc4b71aee 995 SUPERFAMILY SSF53822 675 955 5.24E-50 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_3626 693fce48a748771df483fccbc4b71aee 995 Gene3D G3DSA:1.10.287.130 255 332 1.1E-26 T 13-10-2018 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Gene3D G3DSA:3.30.450.20 27 128 8.0E-10 T 13-10-2018 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Gene3D G3DSA:3.30.565.10 333 488 3.1E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3626 693fce48a748771df483fccbc4b71aee 995 SMART SM00388 268 334 2.7E-23 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3626 693fce48a748771df483fccbc4b71aee 995 SUPERFAMILY SSF47384 252 335 1.41E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Gene3D G3DSA:3.40.50.2300 503 643 4.3E-31 T 13-10-2018 BMD_3626 693fce48a748771df483fccbc4b71aee 995 SMART SM00387 381 490 4.1E-35 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3626 693fce48a748771df483fccbc4b71aee 995 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 382 489 8.0E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3626 693fce48a748771df483fccbc4b71aee 995 Pfam PF00072 Response regulator receiver domain 518 628 5.1E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3626 693fce48a748771df483fccbc4b71aee 995 SUPERFAMILY SSF55785 27 118 7.15E-7 T 13-10-2018 IPR035965 PAS domain superfamily BMD_3626 693fce48a748771df483fccbc4b71aee 995 SUPERFAMILY SSF55785 126 246 4.01E-7 T 13-10-2018 IPR035965 PAS domain superfamily BMD_3626 693fce48a748771df483fccbc4b71aee 995 SUPERFAMILY SSF55874 323 488 2.36E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3626 693fce48a748771df483fccbc4b71aee 995 SMART SM00448 515 629 1.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Gene3D G3DSA:3.30.450.20 129 253 1.5E-12 T 13-10-2018 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Gene3D G3DSA:3.40.50.2300 784 920 7.8E-57 T 13-10-2018 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Pfam PF00512 His Kinase A (phospho-acceptor) domain 268 334 8.2E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3626 693fce48a748771df483fccbc4b71aee 995 PRINTS PR00344 Bacterial sensor protein C-terminal signature 474 487 4.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3626 693fce48a748771df483fccbc4b71aee 995 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 432 4.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3626 693fce48a748771df483fccbc4b71aee 995 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 446 4.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3626 693fce48a748771df483fccbc4b71aee 995 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 468 4.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Gene3D G3DSA:3.40.50.2300 702 946 7.8E-57 T 13-10-2018 BMD_3626 693fce48a748771df483fccbc4b71aee 995 Pfam PF13407 Periplasmic binding protein domain 680 934 7.4E-39 T 13-10-2018 IPR025997 Periplasmic binding protein BMD_3626 693fce48a748771df483fccbc4b71aee 995 SUPERFAMILY SSF52172 514 635 1.71E-29 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3626 693fce48a748771df483fccbc4b71aee 995 Pfam PF13426 PAS domain 40 115 0.002 T 13-10-2018 IPR000014 PAS domain BMD_3626 693fce48a748771df483fccbc4b71aee 995 Pfam PF13426 PAS domain 149 247 0.23 T 13-10-2018 IPR000014 PAS domain BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 102 282 2.1E-40 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 38 314 1.0E-21 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 Gene3D G3DSA:3.40.50.720 35 311 5.6E-75 T 13-10-2018 BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 Gene3D G3DSA:3.30.70.260 316 399 4.5E-18 T 13-10-2018 BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 SUPERFAMILY SSF52283 33 112 1.19E-21 T 13-10-2018 BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 Gene3D G3DSA:3.40.50.720 92 286 5.6E-75 T 13-10-2018 BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 175 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 SUPERFAMILY SSF51735 94 283 6.63E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2386 da9ea4c16ee73f4d1fcbd90a30f26158 399 SUPERFAMILY SSF55021 317 394 4.58E-13 T 13-10-2018 BMD_4300 1b46b2b7e8bf31ef99e1d21b0a75e0b2 181 Pfam PF08864 UPF0302 domain 9 113 1.1E-46 T 13-10-2018 IPR014963 Uncharacterised domain UPF0302, N-terminal BMD_4300 1b46b2b7e8bf31ef99e1d21b0a75e0b2 181 PIRSF PIRSF007165 1 180 5.0E-78 T 13-10-2018 IPR011188 Uncharacterised protein family UPF0302 BMD_4300 1b46b2b7e8bf31ef99e1d21b0a75e0b2 181 Hamap MF_00760 UPF0302 protein . 2 178 31.544 T 13-10-2018 IPR011188 Uncharacterised protein family UPF0302 BMD_4300 1b46b2b7e8bf31ef99e1d21b0a75e0b2 181 Pfam PF08858 IDEAL domain 139 173 1.8E-13 T 13-10-2018 IPR014957 IDEAL domain BMD_4300 1b46b2b7e8bf31ef99e1d21b0a75e0b2 181 SMART SM00914 139 175 1.1E-11 T 13-10-2018 IPR014957 IDEAL domain BMD_4300 1b46b2b7e8bf31ef99e1d21b0a75e0b2 181 Gene3D G3DSA:1.20.1440.290 1 123 1.3E-55 T 13-10-2018 IPR038091 UPF0302, N-terminal domain superfamily BMD_4300 1b46b2b7e8bf31ef99e1d21b0a75e0b2 181 Gene3D G3DSA:4.10.810.10 124 180 4.9E-17 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_1364 565f5726086247b8234fe4153930fcaf 109 SUPERFAMILY SSF101386 4 104 3.76E-27 T 13-10-2018 BMD_1364 565f5726086247b8234fe4153930fcaf 109 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 25 104 2.4E-19 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BMD_1364 565f5726086247b8234fe4153930fcaf 109 PIRSF PIRSF029904 1 109 4.7E-55 T 13-10-2018 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD BMD_1364 565f5726086247b8234fe4153930fcaf 109 Gene3D G3DSA:1.10.287.1080 1 109 3.7E-36 T 13-10-2018 BMD_4961 0a4d75b2a434c36ab73aff90feb8c4bc 354 SUPERFAMILY SSF53686 6 350 1.24E-108 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_4961 0a4d75b2a434c36ab73aff90feb8c4bc 354 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 316 7.1E-78 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_4961 0a4d75b2a434c36ab73aff90feb8c4bc 354 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 51 64 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BMD_4961 0a4d75b2a434c36ab73aff90feb8c4bc 354 Gene3D G3DSA:3.40.50.1100 10 322 8.4E-126 T 13-10-2018 BMD_4961 0a4d75b2a434c36ab73aff90feb8c4bc 354 Gene3D G3DSA:3.40.50.1100 59 155 8.4E-126 T 13-10-2018 BMD_4961 0a4d75b2a434c36ab73aff90feb8c4bc 354 PIRSF PIRSF038945 1 348 1.3E-158 T 13-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 BMD_4961 0a4d75b2a434c36ab73aff90feb8c4bc 354 TIGRFAM TIGR00260 thrC: threonine synthase 9 323 2.1E-105 T 13-10-2018 IPR004450 Threonine synthase-like BMD_0740 3e2220f2a7d656e0826bec213ece27af 40 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 15 38 3.7E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_0740 3e2220f2a7d656e0826bec213ece27af 40 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 13 34 1.6E-8 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3578 0fa64d52e208acd3d930d7674ac0b6e4 182 Gene3D G3DSA:2.60.120.10 7 181 1.6E-65 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3578 0fa64d52e208acd3d930d7674ac0b6e4 182 Hamap MF_00825 3-hydroxyanthranilate 3,4-dioxygenase [nbaC]. 7 175 33.408 T 13-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 BMD_3578 0fa64d52e208acd3d930d7674ac0b6e4 182 TIGRFAM TIGR03037 anthran_nbaC: 3-hydroxyanthranilate 3,4-dioxygenase 11 170 5.4E-73 T 13-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 BMD_3578 0fa64d52e208acd3d930d7674ac0b6e4 182 Pfam PF06052 3-hydroxyanthranilic acid dioxygenase 8 156 3.5E-50 T 13-10-2018 IPR010329 3-hydroxyanthranilic acid dioxygenase GO:0000334|GO:0005506|GO:0055114 KEGG: 00380+1.13.11.6|MetaCyc: PWY-5647|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-6505|Reactome: R-HSA-71240 BMD_3578 0fa64d52e208acd3d930d7674ac0b6e4 182 SUPERFAMILY SSF51182 8 173 8.61E-52 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_4251 e70d27ca36274b019686e36264ee7fd8 257 SMART SM00363 181 243 4.2E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4251 e70d27ca36274b019686e36264ee7fd8 257 Gene3D G3DSA:3.10.290.10 180 233 1.1E-10 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_4251 e70d27ca36274b019686e36264ee7fd8 257 Gene3D G3DSA:3.30.70.330 80 165 3.0E-28 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BMD_4251 e70d27ca36274b019686e36264ee7fd8 257 Pfam PF01479 S4 domain 181 226 3.8E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4251 e70d27ca36274b019686e36264ee7fd8 257 SUPERFAMILY SSF55174 35 253 8.24E-33 T 13-10-2018 BMD_4251 e70d27ca36274b019686e36264ee7fd8 257 Gene3D G3DSA:3.30.1370.160 2 79 1.0E-29 T 13-10-2018 BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 220 3.2E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 SMART SM00448 3 113 5.8E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 SUPERFAMILY SSF52172 4 119 4.27E-33 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 SUPERFAMILY SSF46894 125 220 5.95E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 SMART SM00862 149 220 2.2E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 Pfam PF00072 Response regulator receiver domain 7 112 1.0E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 Gene3D G3DSA:1.10.10.10 129 223 7.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3900 a209722c4fbcd3bef59187767bb8788a 223 Gene3D G3DSA:3.40.50.2300 4 128 2.1E-30 T 13-10-2018 BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 Gene3D G3DSA:1.10.10.10 13 101 8.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 Pfam PF03466 LysR substrate binding domain 105 308 3.4E-42 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 79 1.2E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 57 2.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 68 2.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 47 2.4E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 Gene3D G3DSA:3.40.190.10 184 285 5.4E-41 T 13-10-2018 BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 SUPERFAMILY SSF46785 19 128 7.62E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 SUPERFAMILY SSF53850 105 314 6.03E-41 T 13-10-2018 BMD_1634 ffb8b48fadb7a7a501990835a92668f0 325 Gene3D G3DSA:3.40.190.10 108 308 5.4E-41 T 13-10-2018 BMD_3098 d28f222b68ab6196d6421d72244d214a 147 Pfam PF01230 HIT domain 18 110 2.4E-15 T 13-10-2018 IPR001310 Histidine triad (HIT) protein BMD_3098 d28f222b68ab6196d6421d72244d214a 147 SUPERFAMILY SSF54197 8 137 1.86E-28 T 13-10-2018 IPR036265 HIT-like superfamily BMD_3098 d28f222b68ab6196d6421d72244d214a 147 Gene3D G3DSA:3.30.428.10 4 146 1.7E-28 T 13-10-2018 IPR036265 HIT-like superfamily BMD_2216 d42e2f6724f5275c00243f0c3f96ccbf 453 Gene3D G3DSA:1.10.4160.10 1 447 1.9E-71 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily BMD_2216 d42e2f6724f5275c00243f0c3f96ccbf 453 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 14 415 8.1E-44 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 BMD_2216 d42e2f6724f5275c00243f0c3f96ccbf 453 PIRSF PIRSF002744 2 440 3.4E-60 T 13-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 BMD_2393 bc9642e5949917724c8b19e4d6b7ea2f 93 ProDom PD029230 GPA 5'REGION GP83 ORF83 GENE GP45 BACTERIOPHAGE SIMILAR ORF4 1 76 7.0E-4 T 13-10-2018 IPR020284 Protein of unknown function CP83 BMD_5144 da68b7a8a7970de2567e57b1e4c610a8 383 Gene3D G3DSA:3.40.50.2000 7 363 1.1E-155 T 13-10-2018 BMD_5144 da68b7a8a7970de2567e57b1e4c610a8 383 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 5 368 1.2E-165 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 BMD_5144 da68b7a8a7970de2567e57b1e4c610a8 383 Gene3D G3DSA:3.40.50.2000 192 352 1.1E-155 T 13-10-2018 BMD_5144 da68b7a8a7970de2567e57b1e4c610a8 383 SUPERFAMILY SSF53756 5 372 2.42E-137 T 13-10-2018 BMD_5144 da68b7a8a7970de2567e57b1e4c610a8 383 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 28 365 2.3E-120 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BMD_0814 7d20926f7fd8fb718ee384c950778c39 335 SUPERFAMILY SSF50022 5 119 3.4E-33 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_0814 7d20926f7fd8fb718ee384c950778c39 335 Gene3D G3DSA:2.102.10.10 7 135 2.2E-36 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_0814 7d20926f7fd8fb718ee384c950778c39 335 Gene3D G3DSA:3.30.530.90 136 320 1.1E-11 T 13-10-2018 BMD_0814 7d20926f7fd8fb718ee384c950778c39 335 SUPERFAMILY SSF55961 119 320 4.83E-22 T 13-10-2018 BMD_0814 7d20926f7fd8fb718ee384c950778c39 335 Pfam PF00355 Rieske [2Fe-2S] domain 11 90 1.5E-19 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 SUPERFAMILY SSF52540 314 533 4.17E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0254 4dc8b520e378843c46e54079d23884c9 644 Gene3D G3DSA:1.10.287.380 562 642 1.4E-6 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 ProSitePatterns PS00211 ABC transporters family signature. 449 463 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 Pfam PF00005 ABC transporter 19 195 4.3E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 Gene3D G3DSA:3.40.50.300 2 289 1.5E-70 T 13-10-2018 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 Pfam PF12848 ABC transporter 235 316 8.5E-26 T 13-10-2018 IPR032781 ABC-transporter extension domain BMD_0254 4dc8b520e378843c46e54079d23884c9 644 Pfam PF16326 ABC transporter C-terminal domain 572 639 6.3E-13 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 SMART SM00382 356 521 2.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0254 4dc8b520e378843c46e54079d23884c9 644 SMART SM00382 28 240 1.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0254 4dc8b520e378843c46e54079d23884c9 644 SUPERFAMILY SSF52540 4 249 1.14E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0254 4dc8b520e378843c46e54079d23884c9 644 Pfam PF00005 ABC transporter 348 477 4.2E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 Gene3D G3DSA:3.40.50.300 293 559 2.3E-60 T 13-10-2018 BMD_0254 4dc8b520e378843c46e54079d23884c9 644 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1955 24129d2219ae397d8608120cfcab4472 204 SUPERFAMILY SSF53254 7 160 1.41E-35 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_1955 24129d2219ae397d8608120cfcab4472 204 Gene3D G3DSA:3.40.50.1240 5 199 5.8E-40 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_1955 24129d2219ae397d8608120cfcab4472 204 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 9 160 3.0E-32 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_1955 24129d2219ae397d8608120cfcab4472 204 SMART SM00855 6 154 2.2E-14 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_1955 24129d2219ae397d8608120cfcab4472 204 PIRSF PIRSF000709 5 164 6.1E-4 T 13-10-2018 BMD_0732 e86be6b90d18d1e25c64bfe1ff8124f3 246 PRINTS PR00114 Serine/threonine phosphatase family signature 2 29 1.2E-8 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0732 e86be6b90d18d1e25c64bfe1ff8124f3 246 PRINTS PR00114 Serine/threonine phosphatase family signature 227 243 1.2E-8 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0732 e86be6b90d18d1e25c64bfe1ff8124f3 246 PRINTS PR00114 Serine/threonine phosphatase family signature 40 67 1.2E-8 T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0732 e86be6b90d18d1e25c64bfe1ff8124f3 246 SUPERFAMILY SSF56300 1 240 1.55E-42 T 13-10-2018 BMD_0732 e86be6b90d18d1e25c64bfe1ff8124f3 246 Gene3D G3DSA:3.60.21.10 1 246 6.3E-63 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_0732 e86be6b90d18d1e25c64bfe1ff8124f3 246 Pfam PF00149 Calcineurin-like phosphoesterase 1 195 1.0E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_5262 2c8af8f15bcc96c97f2938a5c62bc010 206 TIGRFAM TIGR02841 spore_YyaC: putative sporulation protein YyaC 42 181 1.6E-67 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 BMD_5262 2c8af8f15bcc96c97f2938a5c62bc010 206 Pfam PF06866 Protein of unknown function (DUF1256) 17 179 4.6E-65 T 13-10-2018 IPR009665 Protein of unknown function DUF1256 BMD_5262 2c8af8f15bcc96c97f2938a5c62bc010 206 SUPERFAMILY SSF53163 13 194 7.85E-52 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily BMD_2831 d805c468785646f74717d8dee04f5883 320 SUPERFAMILY SSF161098 81 308 3.92E-58 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2831 d805c468785646f74717d8dee04f5883 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 308 7.0E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2831 d805c468785646f74717d8dee04f5883 320 Gene3D G3DSA:1.10.3720.10 77 319 6.5E-68 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 Gene3D G3DSA:3.90.1260.10 173 401 4.4E-92 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 116 127 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 9 17 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 SUPERFAMILY SSF52402 1 170 4.19E-47 T 13-10-2018 BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 TIGRFAM TIGR00032 argG: argininosuccinate synthase 5 393 4.9E-173 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 Pfam PF00764 Arginosuccinate synthase 7 390 8.3E-179 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 Gene3D G3DSA:3.40.50.620 5 172 1.5E-65 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 SUPERFAMILY SSF69864 170 397 7.32E-93 T 13-10-2018 BMD_4776 81ded9098aeb29a29c1c7ed05141889f 402 Hamap MF_00005 Argininosuccinate synthase [argG]. 3 396 54.25 T 13-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 SMART SM00382 357 511 0.0077 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Pfam PF13538 UvrD-like helicase C-terminal domain 679 727 3.3E-17 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 TIGRFAM TIGR01448 recD_rel: helicase, RecD/TraA family 17 750 4.7E-261 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 SUPERFAMILY SSF52540 340 733 3.26E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Pfam PF13604 AAA domain 344 551 1.1E-50 T 13-10-2018 BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Gene3D G3DSA:3.40.50.300 515 743 1.8E-142 T 13-10-2018 BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Pfam PF14490 Helix-hairpin-helix containing domain 157 248 8.5E-32 T 13-10-2018 IPR029493 RecD helicase-like helix-hairpin-helix domain BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Hamap MF_01488 ATP-dependent RecD-like DNA helicase [recD2]. 13 764 29.457 T 13-10-2018 IPR006345 DNA helicase, RecD-like GO:0003677|GO:0032508|GO:0043141 BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Gene3D G3DSA:2.30.30.940 601 680 1.8E-142 T 13-10-2018 BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Gene3D G3DSA:1.10.10.2220 199 296 8.4E-18 T 13-10-2018 BMD_4602 fd53f4ad297bce726b93ea1edc3772c3 785 Gene3D G3DSA:3.40.50.300 335 749 1.8E-142 T 13-10-2018 BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 SUPERFAMILY SSF52440 4 94 3.88E-26 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 Gene3D G3DSA:3.40.50.20 2 116 4.2E-45 T 13-10-2018 BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 Gene3D G3DSA:3.30.470.20 186 375 7.7E-78 T 13-10-2018 BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 Gene3D G3DSA:3.30.1490.20 117 185 9.0E-26 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 11 365 2.4E-126 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 11 360 41.231 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 SUPERFAMILY SSF51246 309 375 5.65E-16 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 Pfam PF02222 ATP-grasp domain 116 285 3.0E-60 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BMD_0272 f66eca15f339f94421d50b53bf596ad6 381 SUPERFAMILY SSF56059 107 305 4.07E-66 T 13-10-2018 BMD_1225 dc1b52035870f343f349dedd05a66543 479 Pfam PF13183 4Fe-4S dicluster domain 311 377 9.5E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BMD_1225 dc1b52035870f343f349dedd05a66543 479 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 19 455 5.6E-210 T 13-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 BMD_1225 dc1b52035870f343f349dedd05a66543 479 SUPERFAMILY SSF46548 271 393 4.01E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_1225 dc1b52035870f343f349dedd05a66543 479 Pfam PF11870 Domain of unknown function (DUF3390) 384 469 4.0E-19 T 13-10-2018 IPR024569 4Fe-4S binding protein, C-terminal BMD_1225 dc1b52035870f343f349dedd05a66543 479 Gene3D G3DSA:3.40.50.10420 126 295 4.9E-15 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily BMD_1225 dc1b52035870f343f349dedd05a66543 479 SUPERFAMILY SSF100950 64 296 4.18E-39 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_1225 dc1b52035870f343f349dedd05a66543 479 Pfam PF02589 LUD domain 70 295 1.3E-56 T 13-10-2018 IPR003741 LUD domain BMD_1225 dc1b52035870f343f349dedd05a66543 479 Hamap MF_02103 Lactate utilization protein B [lutB]. 1 475 68.265 T 13-10-2018 IPR022825 Lactate utilization protein B BMD_1225 dc1b52035870f343f349dedd05a66543 479 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 313 324 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_0023 c6bcb87720772c5f205414666db12c4e 156 Gene3D G3DSA:3.40.140.10 1 156 4.6E-61 T 13-10-2018 BMD_0023 c6bcb87720772c5f205414666db12c4e 156 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 8 149 45.074 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 BMD_0023 c6bcb87720772c5f205414666db12c4e 156 Pfam PF14437 MafB19-like deaminase 3 149 2.2E-44 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 BMD_0023 c6bcb87720772c5f205414666db12c4e 156 SUPERFAMILY SSF53927 3 153 3.19E-54 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BMD_0023 c6bcb87720772c5f205414666db12c4e 156 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 90 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BMD_3819 06f52defcf8ba8adbe8c08a37cedde44 394 SUPERFAMILY SSF53187 252 385 4.39E-8 T 13-10-2018 BMD_3819 06f52defcf8ba8adbe8c08a37cedde44 394 Pfam PF07454 Stage II sporulation protein P (SpoIIP) 103 382 4.2E-73 T 13-10-2018 IPR010897 Sporulation stage II, protein P BMD_3819 06f52defcf8ba8adbe8c08a37cedde44 394 TIGRFAM TIGR02867 spore_II_P: stage II sporulation protein P 180 386 2.3E-69 T 13-10-2018 IPR010897 Sporulation stage II, protein P BMD_4958 99b9130a26b02c8a8cea541d071acb0a 108 Pfam PF07315 Protein of unknown function (DUF1462) 9 101 1.9E-43 T 13-10-2018 IPR009190 Protein of unknown function DUF1462 BMD_4958 99b9130a26b02c8a8cea541d071acb0a 108 SUPERFAMILY SSF52833 2 105 1.68E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4958 99b9130a26b02c8a8cea541d071acb0a 108 Gene3D G3DSA:3.40.30.30 1 105 1.1E-42 T 13-10-2018 IPR038218 YuzD-like superfamily BMD_4958 99b9130a26b02c8a8cea541d071acb0a 108 PIRSF PIRSF010603 2 107 4.3E-45 T 13-10-2018 IPR009190 Protein of unknown function DUF1462 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 Pfam PF01676 Metalloenzyme superfamily 6 379 4.7E-47 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 TIGRFAM TIGR01696 deoB: phosphopentomutase 7 387 2.7E-205 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 PIRSF PIRSF001491 4 393 4.8E-171 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 SUPERFAMILY SSF143856 102 218 5.36E-53 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 Gene3D G3DSA:3.40.720.10 6 389 8.2E-179 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 Gene3D G3DSA:3.30.70.1250 100 218 8.2E-179 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 Hamap MF_00740 Phosphopentomutase [deoB]. 5 389 56.502 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BMD_4382 1d40136d2ab6b31d5c97d7d4803f68bc 393 SUPERFAMILY SSF53649 4 392 1.2E-79 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 Gene3D G3DSA:1.10.287.130 372 448 1.8E-19 T 13-10-2018 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 SUPERFAMILY SSF55874 443 600 2.62E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 Gene3D G3DSA:3.30.565.10 449 600 1.5E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 Gene3D G3DSA:1.20.1480.50 170 260 5.0E-7 T 13-10-2018 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 SMART SM00304 206 258 6.1E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 SUPERFAMILY SSF47384 381 451 3.14E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 586 599 3.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 562 580 3.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 551 561 3.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 533 547 3.3E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 SMART SM00387 496 601 1.9E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 SUPERFAMILY SSF55785 268 371 2.47E-6 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 Pfam PF00512 His Kinase A (phospho-acceptor) domain 389 451 4.7E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 SMART SM00388 387 453 1.1E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 Gene3D G3DSA:3.30.450.20 261 369 8.6E-8 T 13-10-2018 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 SUPERFAMILY SSF158472 207 255 6.41E-5 T 13-10-2018 BMD_0303 8aec36ac63ab63f45df8a25325ba656a 601 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 497 600 3.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0812 b3545aff81c9b401999c687712ff3019 922 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 148 159 - T 13-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 Pfam PF00311 Phosphoenolpyruvate carboxylase 143 922 2.3E-296 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 SUPERFAMILY SSF51621 17 922 1.02E-295 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BMD_0812 b3545aff81c9b401999c687712ff3019 922 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 568 588 3.4E-59 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 748 774 3.4E-59 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 610 639 3.4E-59 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 200 216 3.4E-59 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 259 274 3.4E-59 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 402 422 3.4E-59 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 147 160 3.4E-59 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_0812 b3545aff81c9b401999c687712ff3019 922 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 9 922 17.937 T 13-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 Gene3D G3DSA:2.30.42.10 321 423 2.8E-27 T 13-10-2018 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 Pfam PF13365 Trypsin-like peptidase domain 139 280 3.2E-30 T 13-10-2018 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 Gene3D G3DSA:2.40.10.10 204 320 1.0E-39 T 13-10-2018 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 PRINTS PR00834 HtrA/DegQ protease family signature 172 192 1.5E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 PRINTS PR00834 HtrA/DegQ protease family signature 251 268 1.5E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 PRINTS PR00834 HtrA/DegQ protease family signature 364 376 1.5E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 PRINTS PR00834 HtrA/DegQ protease family signature 213 237 1.5E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 PRINTS PR00834 HtrA/DegQ protease family signature 151 163 1.5E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 PRINTS PR00834 HtrA/DegQ protease family signature 273 290 1.5E-37 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 Gene3D G3DSA:2.40.10.10 78 202 4.9E-26 T 13-10-2018 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 SMART SM00228 337 407 8.0E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 SUPERFAMILY SSF50156 303 416 3.15E-20 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 Pfam PF13180 PDZ domain 318 416 1.6E-20 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_3899 79bd117efcd2c6f30008c0284cb0a056 424 SUPERFAMILY SSF50494 101 314 6.75E-59 T 13-10-2018 IPR009003 Peptidase S1, PA clan BMD_2095 130440a41da6b312b7312282c3cb5eca 100 SUPERFAMILY SSF46785 13 93 1.63E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2095 130440a41da6b312b7312282c3cb5eca 100 SMART SM00418 14 93 1.4E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2095 130440a41da6b312b7312282c3cb5eca 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 1.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2095 130440a41da6b312b7312282c3cb5eca 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 1.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2095 130440a41da6b312b7312282c3cb5eca 100 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 16 31 1.3E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2095 130440a41da6b312b7312282c3cb5eca 100 Gene3D G3DSA:1.10.10.10 2 98 5.0E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2095 130440a41da6b312b7312282c3cb5eca 100 Pfam PF01022 Bacterial regulatory protein, arsR family 24 66 4.7E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_4933 fa2040126fdbb1b725847a4866880584 133 SUPERFAMILY SSF50249 4 87 1.49E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4933 fa2040126fdbb1b725847a4866880584 133 Pfam PF00575 S1 RNA binding domain 3 76 6.9E-20 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_4933 fa2040126fdbb1b725847a4866880584 133 Gene3D G3DSA:2.40.50.140 1 87 3.9E-31 T 13-10-2018 BMD_4933 fa2040126fdbb1b725847a4866880584 133 SMART SM00316 5 76 2.3E-24 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_0501 95f04cb909146e371681186e8e77b2ec 136 Gene3D G3DSA:3.30.70.920 54 136 4.5E-13 T 13-10-2018 BMD_0501 95f04cb909146e371681186e8e77b2ec 136 SUPERFAMILY SSF46785 1 62 3.37E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0501 95f04cb909146e371681186e8e77b2ec 136 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 2.0E-15 T 13-10-2018 BMD_0501 95f04cb909146e371681186e8e77b2ec 136 Pfam PF01037 Lrp/AsnC ligand binding domain 89 135 5.0E-7 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BMD_0501 95f04cb909146e371681186e8e77b2ec 136 SUPERFAMILY SSF54909 65 135 5.23E-7 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_0501 95f04cb909146e371681186e8e77b2ec 136 SMART SM00344 2 109 2.5E-24 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BMD_0501 95f04cb909146e371681186e8e77b2ec 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 1.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_0501 95f04cb909146e371681186e8e77b2ec 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 1.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_0501 95f04cb909146e371681186e8e77b2ec 136 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 1.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_0501 95f04cb909146e371681186e8e77b2ec 136 Gene3D G3DSA:1.10.10.10 1 53 6.6E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3839 c9a5477e7088a54810de539452d0c325 164 Gene3D G3DSA:3.40.630.30 1 164 4.1E-41 T 13-10-2018 BMD_3839 c9a5477e7088a54810de539452d0c325 164 Pfam PF00583 Acetyltransferase (GNAT) family 40 138 8.8E-19 T 13-10-2018 IPR000182 GNAT domain BMD_3839 c9a5477e7088a54810de539452d0c325 164 PIRSF PIRSF037663 1 163 8.4E-14 T 13-10-2018 IPR017255 Acetyltransferase, GNAT, predicted BMD_3839 c9a5477e7088a54810de539452d0c325 164 SUPERFAMILY SSF55729 2 163 1.03E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0832 ee149f9487412952aaa57b2943d90d20 221 Pfam PF03741 Integral membrane protein TerC family 11 179 5.6E-45 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BMD_0832 ee149f9487412952aaa57b2943d90d20 221 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 9 180 5.0E-70 T 13-10-2018 IPR022301 Integral membrane protein YjbE BMD_1722 de38c30e3862e0e3af09b74813fc48c2 268 SUPERFAMILY SSF56317 1 256 7.59E-64 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_1722 de38c30e3862e0e3af09b74813fc48c2 268 Gene3D G3DSA:3.60.110.10 1 265 1.5E-88 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_1722 de38c30e3862e0e3af09b74813fc48c2 268 Pfam PF00795 Carbon-nitrogen hydrolase 8 248 2.4E-45 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BMD_3149 fb8414238138bc3f88499cbc13f8b89b 180 Pfam PF13302 Acetyltransferase (GNAT) domain 3 142 9.1E-18 T 13-10-2018 IPR000182 GNAT domain BMD_3149 fb8414238138bc3f88499cbc13f8b89b 180 Gene3D G3DSA:3.40.630.30 1 177 3.2E-46 T 13-10-2018 BMD_3149 fb8414238138bc3f88499cbc13f8b89b 180 SUPERFAMILY SSF55729 2 166 8.19E-37 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1705 d4ac9e7295c4c7b4723dd0ef00338fdf 275 SMART SM00382 37 236 1.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1705 d4ac9e7295c4c7b4723dd0ef00338fdf 275 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1705 d4ac9e7295c4c7b4723dd0ef00338fdf 275 SUPERFAMILY SSF52540 8 258 9.84E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1705 d4ac9e7295c4c7b4723dd0ef00338fdf 275 Gene3D G3DSA:3.40.50.300 6 271 2.0E-75 T 13-10-2018 BMD_1705 d4ac9e7295c4c7b4723dd0ef00338fdf 275 TIGRFAM TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD 27 262 1.1E-98 T 13-10-2018 IPR014138 Nickel import ATP-binding protein NikD GO:0005886|GO:0015413|GO:0015675|GO:0016151 BMD_1705 d4ac9e7295c4c7b4723dd0ef00338fdf 275 Pfam PF00005 ABC transporter 29 186 5.1E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1464 84cdff7628f6591740a773b9f22cbbb5 259 SUPERFAMILY SSF56601 20 252 3.64E-41 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_1464 84cdff7628f6591740a773b9f22cbbb5 259 Gene3D G3DSA:3.40.710.10 1 258 1.1E-59 T 13-10-2018 BMD_1464 84cdff7628f6591740a773b9f22cbbb5 259 Pfam PF13354 Beta-lactamase enzyme family 31 233 5.9E-53 T 13-10-2018 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 SUPERFAMILY SSF53474 14 277 8.71E-66 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 Pfam PF00561 alpha/beta hydrolase fold 25 258 1.3E-29 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 Gene3D G3DSA:3.40.50.1820 1 277 1.7E-93 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 221 235 1.6E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 1.6E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 PRINTS PR00111 Alpha/beta hydrolase fold signature 95 108 1.6E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 PRINTS PR00412 Epoxide hydrolase signature 219 235 1.5E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 PRINTS PR00412 Epoxide hydrolase signature 31 49 1.5E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 PRINTS PR00412 Epoxide hydrolase signature 51 66 1.5E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_3649 2cbf28b22e6ecea9ec36b49ebd434563 278 PRINTS PR00412 Epoxide hydrolase signature 253 275 1.5E-11 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_4599 72f1fc27829bcd5fc2338dad05b87c0a 353 Pfam PF01594 AI-2E family transporter 20 346 7.1E-79 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like BMD_1360 38af37b366f94a3fa5a5cf54c3ba121d 338 SUPERFAMILY SSF55797 214 333 1.24E-20 T 13-10-2018 IPR035940 CAP superfamily BMD_1360 38af37b366f94a3fa5a5cf54c3ba121d 338 Pfam PF00188 Cysteine-rich secretory protein family 222 331 1.6E-15 T 13-10-2018 IPR014044 CAP domain BMD_1360 38af37b366f94a3fa5a5cf54c3ba121d 338 Gene3D G3DSA:3.40.33.10 12 334 1.8E-104 T 13-10-2018 IPR035940 CAP superfamily BMD_1360 38af37b366f94a3fa5a5cf54c3ba121d 338 Pfam PF14504 CAP-associated N-terminal 51 190 1.5E-49 T 13-10-2018 IPR029410 CAP-associated domain BMD_5017 797a1ed0e6d66cfdfe9af9c7ac797702 77 Pfam PF02597 ThiS family 4 77 1.6E-17 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 BMD_5017 797a1ed0e6d66cfdfe9af9c7ac797702 77 SUPERFAMILY SSF54285 1 77 5.79E-17 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BMD_5017 797a1ed0e6d66cfdfe9af9c7ac797702 77 Gene3D G3DSA:3.10.20.30 1 77 2.6E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_5017 797a1ed0e6d66cfdfe9af9c7ac797702 77 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 77 9.1E-25 T 13-10-2018 BMD_2993 6f6ac7247ec881c0aadbce367aee2796 380 SMART SM00257 199 242 3.8E-19 T 13-10-2018 IPR018392 LysM domain BMD_2993 6f6ac7247ec881c0aadbce367aee2796 380 SUPERFAMILY SSF54106 199 241 6.28E-12 T 13-10-2018 BMD_2993 6f6ac7247ec881c0aadbce367aee2796 380 Pfam PF01476 LysM domain 200 241 5.5E-16 T 13-10-2018 IPR018392 LysM domain BMD_2993 6f6ac7247ec881c0aadbce367aee2796 380 Gene3D G3DSA:3.10.350.10 195 247 2.1E-19 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2993 6f6ac7247ec881c0aadbce367aee2796 380 Gene3D G3DSA:3.90.1720.10 252 380 1.4E-38 T 13-10-2018 BMD_2993 6f6ac7247ec881c0aadbce367aee2796 380 Pfam PF00877 NlpC/P60 family 273 376 1.6E-26 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_2993 6f6ac7247ec881c0aadbce367aee2796 380 SUPERFAMILY SSF54001 255 379 3.48E-34 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_1011 d921ac3d2319db4c38e7a07c3d3c12a8 157 SUPERFAMILY SSF54427 43 155 7.36E-11 T 13-10-2018 IPR032710 NTF2-like domain superfamily BMD_3658 f7db3452aaeac21fb72ca0282d630cd1 94 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 83 3.0E-30 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml BMD_3658 f7db3452aaeac21fb72ca0282d630cd1 94 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 12 63 1.0E-7 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml BMD_3658 f7db3452aaeac21fb72ca0282d630cd1 94 SUPERFAMILY SSF159133 1 88 5.76E-30 T 13-10-2018 IPR036677 EutN/Ccml superfamily BMD_3658 f7db3452aaeac21fb72ca0282d630cd1 94 Gene3D G3DSA:2.40.50.220 1 92 3.0E-32 T 13-10-2018 IPR036677 EutN/Ccml superfamily BMD_0085 675f75548d932b99666ae2816050edea 246 Pfam PF00092 von Willebrand factor type A domain 3 80 7.1E-7 T 13-10-2018 IPR002035 von Willebrand factor, type A BMD_0085 675f75548d932b99666ae2816050edea 246 SUPERFAMILY SSF53300 134 226 1.31E-10 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BMD_0085 675f75548d932b99666ae2816050edea 246 Gene3D G3DSA:3.40.50.410 1 239 8.9E-58 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BMD_0085 675f75548d932b99666ae2816050edea 246 SUPERFAMILY SSF53300 3 84 5.19E-9 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BMD_0085 675f75548d932b99666ae2816050edea 246 Pfam PF13519 von Willebrand factor type A domain 136 235 5.0E-6 T 13-10-2018 IPR002035 von Willebrand factor, type A BMD_3748 a6124127e72bef08ce8a336e162aa5d8 50 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 18 42 4.6E-8 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3748 a6124127e72bef08ce8a336e162aa5d8 50 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 21 44 1.4E-12 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_0760 d3db8976365f3fef451e5b130f5204c9 251 SUPERFAMILY SSF54001 2 246 2.78E-69 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_0760 d3db8976365f3fef451e5b130f5204c9 251 PRINTS PR01543 Arylamine N-acetyltransferase signature 99 124 1.6E-13 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 BMD_0760 d3db8976365f3fef451e5b130f5204c9 251 PRINTS PR01543 Arylamine N-acetyltransferase signature 19 42 1.6E-13 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 BMD_0760 d3db8976365f3fef451e5b130f5204c9 251 PRINTS PR01543 Arylamine N-acetyltransferase signature 43 66 1.6E-13 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 BMD_0760 d3db8976365f3fef451e5b130f5204c9 251 PRINTS PR01543 Arylamine N-acetyltransferase signature 67 89 1.6E-13 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 BMD_0760 d3db8976365f3fef451e5b130f5204c9 251 Pfam PF00797 N-acetyltransferase 21 246 7.6E-63 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 BMD_0760 d3db8976365f3fef451e5b130f5204c9 251 Gene3D G3DSA:3.30.2140.20 2 247 1.5E-78 T 13-10-2018 BMD_0096 bb414c3ddfb6e9eb1e5eb068fd7db422 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 117 5.7E-41 T 13-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BMD_0096 bb414c3ddfb6e9eb1e5eb068fd7db422 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 119 9.1E-37 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BMD_0096 bb414c3ddfb6e9eb1e5eb068fd7db422 119 SMART SM00905 4 117 1.2E-47 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BMD_0096 bb414c3ddfb6e9eb1e5eb068fd7db422 119 Gene3D G3DSA:3.30.1130.10 1 119 2.5E-44 T 13-10-2018 BMD_0096 bb414c3ddfb6e9eb1e5eb068fd7db422 119 Pfam PF02152 Dihydroneopterin aldolase 4 115 5.5E-35 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BMD_0096 bb414c3ddfb6e9eb1e5eb068fd7db422 119 SUPERFAMILY SSF55620 2 119 1.22E-38 T 13-10-2018 BMD_2012 26790451723c2adf37d8fe5528797976 503 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 90 114 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 BMD_2012 26790451723c2adf37d8fe5528797976 503 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 22 499 5.9E-138 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 BMD_2012 26790451723c2adf37d8fe5528797976 503 Gene3D G3DSA:1.20.1250.20 8 503 2.9E-156 T 13-10-2018 BMD_2012 26790451723c2adf37d8fe5528797976 503 Pfam PF00854 POT family 102 470 2.4E-83 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 BMD_2012 26790451723c2adf37d8fe5528797976 503 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 164 176 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 BMD_2012 26790451723c2adf37d8fe5528797976 503 SUPERFAMILY SSF103473 231 497 1.31E-13 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2012 26790451723c2adf37d8fe5528797976 503 SUPERFAMILY SSF103473 21 261 7.72E-25 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1873 50d35c7c41e830b6d3636a8c9a1215f7 344 Gene3D G3DSA:3.40.50.970 3 204 1.0E-83 T 13-10-2018 BMD_1873 50d35c7c41e830b6d3636a8c9a1215f7 344 Gene3D G3DSA:3.40.50.920 205 337 5.8E-47 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_1873 50d35c7c41e830b6d3636a8c9a1215f7 344 Pfam PF02779 Transketolase, pyrimidine binding domain 4 192 2.6E-56 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_1873 50d35c7c41e830b6d3636a8c9a1215f7 344 SMART SM00861 5 192 2.2E-63 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_1873 50d35c7c41e830b6d3636a8c9a1215f7 344 Pfam PF02780 Transketolase, C-terminal domain 206 328 1.9E-41 T 13-10-2018 IPR033248 Transketolase, C-terminal domain BMD_1873 50d35c7c41e830b6d3636a8c9a1215f7 344 SUPERFAMILY SSF52518 2 216 1.02E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1873 50d35c7c41e830b6d3636a8c9a1215f7 344 SUPERFAMILY SSF52922 201 336 9.03E-41 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_2839 95e459caf5f3159695318e10bddb2568 345 Gene3D G3DSA:3.20.20.450 99 343 3.8E-57 T 13-10-2018 IPR035919 EAL domain superfamily BMD_2839 95e459caf5f3159695318e10bddb2568 345 SMART SM00052 97 337 5.5E-27 T 13-10-2018 IPR001633 EAL domain BMD_2839 95e459caf5f3159695318e10bddb2568 345 Pfam PF00563 EAL domain 102 332 2.3E-49 T 13-10-2018 IPR001633 EAL domain BMD_2839 95e459caf5f3159695318e10bddb2568 345 SUPERFAMILY SSF141868 101 336 6.15E-57 T 13-10-2018 IPR035919 EAL domain superfamily BMD_2553 47befddc13dbf245653d52d244b6a0d9 544 Pfam PF07728 AAA domain (dynein-related subfamily) 217 367 9.0E-6 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 BMD_2553 47befddc13dbf245653d52d244b6a0d9 544 Gene3D G3DSA:3.40.50.300 199 380 3.7E-19 T 13-10-2018 BMD_2553 47befddc13dbf245653d52d244b6a0d9 544 Pfam PF12102 Domain of unknown function (DUF3578) 10 168 1.7E-11 T 13-10-2018 IPR021961 Protein of unknown function DUF3578 BMD_2553 47befddc13dbf245653d52d244b6a0d9 544 SUPERFAMILY SSF52540 175 378 4.13E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 Gene3D G3DSA:3.40.50.720 1 163 7.1E-57 T 13-10-2018 BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 SUPERFAMILY SSF48179 164 288 9.52E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 5 294 3.2E-113 T 13-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 163 1.4E-51 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 Gene3D G3DSA:1.10.1040.10 164 295 5.0E-33 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 SUPERFAMILY SSF51735 3 164 5.91E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 PIRSF PIRSF000103 1 295 2.2E-75 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 BMD_1134 5dcadae2922f86ea05cf5f78abdb9ce7 300 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 286 1.8E-31 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 BMD_0976 fa948b149d27a04f0b58b71c9c488fdf 434 Pfam PF07690 Major Facilitator Superfamily 13 376 5.7E-61 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_0976 fa948b149d27a04f0b58b71c9c488fdf 434 Gene3D G3DSA:1.20.1250.20 1 195 3.6E-52 T 13-10-2018 BMD_0976 fa948b149d27a04f0b58b71c9c488fdf 434 SUPERFAMILY SSF103473 2 411 4.32E-81 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0976 fa948b149d27a04f0b58b71c9c488fdf 434 Gene3D G3DSA:1.20.1250.20 216 414 9.3E-27 T 13-10-2018 BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 Gene3D G3DSA:1.10.10.10 1 95 2.4E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 Pfam PF01022 Bacterial regulatory protein, arsR family 21 66 1.3E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 SMART SM00418 14 90 1.1E-26 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 48 63 2.6E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 63 78 2.6E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 16 31 2.6E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 35 46 2.6E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1905 5c195ef12826b7c26363f585ccb7a20a 116 SUPERFAMILY SSF46785 9 83 6.0E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3309 910c404e4290ee353f665a75e5e2d950 289 Gene3D G3DSA:3.40.190.290 91 287 2.7E-34 T 13-10-2018 BMD_3309 910c404e4290ee353f665a75e5e2d950 289 SUPERFAMILY SSF46785 1 110 5.99E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3309 910c404e4290ee353f665a75e5e2d950 289 Pfam PF03466 LysR substrate binding domain 89 283 3.0E-35 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3309 910c404e4290ee353f665a75e5e2d950 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 9.2E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3309 910c404e4290ee353f665a75e5e2d950 289 SUPERFAMILY SSF53850 90 284 2.64E-33 T 13-10-2018 BMD_3309 910c404e4290ee353f665a75e5e2d950 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3309 910c404e4290ee353f665a75e5e2d950 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3309 910c404e4290ee353f665a75e5e2d950 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3309 910c404e4290ee353f665a75e5e2d950 289 Gene3D G3DSA:1.10.10.10 1 89 1.5E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 14 121 5.8E-29 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 Gene3D G3DSA:1.10.1060.10 118 252 9.5E-28 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 159 170 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 Pfam PF13237 4Fe-4S dicluster domain 153 227 6.9E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 Gene3D G3DSA:3.10.20.30 2 116 2.0E-31 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 SUPERFAMILY SSF46548 118 243 8.72E-27 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 15 238 1.0E-40 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BMD_4709 07411c7d8d0f694928fb382ca1b90041 257 SUPERFAMILY SSF54292 9 116 3.63E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BMD_0081 6a9e25cb07b39d95711ffec1b4fc4361 155 SUPERFAMILY SSF50249 4 85 8.26E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0081 6a9e25cb07b39d95711ffec1b4fc4361 155 Pfam PF00575 S1 RNA binding domain 4 74 1.7E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 BMD_0081 6a9e25cb07b39d95711ffec1b4fc4361 155 SMART SM00316 4 74 1.1E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_0081 6a9e25cb07b39d95711ffec1b4fc4361 155 Gene3D G3DSA:2.40.50.140 1 84 3.5E-29 T 13-10-2018 BMD_2345 7c70c4af1219c743398bef5df349626a 390 Gene3D G3DSA:3.40.50.1970 1 184 5.0E-53 T 13-10-2018 BMD_2345 7c70c4af1219c743398bef5df349626a 390 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_2345 7c70c4af1219c743398bef5df349626a 390 Gene3D G3DSA:1.20.1090.10 185 389 3.5E-41 T 13-10-2018 BMD_2345 7c70c4af1219c743398bef5df349626a 390 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_2345 7c70c4af1219c743398bef5df349626a 390 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 367 3.8E-94 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_2345 7c70c4af1219c743398bef5df349626a 390 SUPERFAMILY SSF56796 1 388 1.44E-111 T 13-10-2018 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 PRINTS PR00050 Cold shock protein signature 4 19 2.3E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 PRINTS PR00050 Cold shock protein signature 39 57 2.3E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 PRINTS PR00050 Cold shock protein signature 24 33 2.3E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 Pfam PF00313 'Cold-shock' DNA-binding domain 2 65 5.0E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 SMART SM00357 3 65 3.5E-27 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 PIRSF PIRSF002599 1 65 2.1E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 SUPERFAMILY SSF50249 1 64 1.63E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 Gene3D G3DSA:2.40.50.140 1 65 3.7E-30 T 13-10-2018 BMD_0987 7fb084c2ca7f912847ec0dc0130a0f02 65 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_3348 50004dd098933c58514e33ce4c4e49bc 160 Pfam PF13686 DsrE/DsrF/DrsH-like family 5 159 8.9E-68 T 13-10-2018 IPR032836 DsrE2-like family BMD_3348 50004dd098933c58514e33ce4c4e49bc 160 SUPERFAMILY SSF75169 6 158 2.16E-21 T 13-10-2018 IPR027396 DsrEFH-like BMD_3348 50004dd098933c58514e33ce4c4e49bc 160 Gene3D G3DSA:3.40.1260.10 2 160 1.9E-66 T 13-10-2018 IPR027396 DsrEFH-like BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 Gene3D G3DSA:3.40.50.720 272 567 4.2E-109 T 13-10-2018 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PRINTS PR00072 Malic enzyme signature 301 317 3.0E-71 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PRINTS PR00072 Malic enzyme signature 245 263 3.0E-71 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PRINTS PR00072 Malic enzyme signature 411 427 3.0E-71 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PRINTS PR00072 Malic enzyme signature 150 179 3.0E-71 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PRINTS PR00072 Malic enzyme signature 88 112 3.0E-71 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PRINTS PR00072 Malic enzyme signature 270 286 3.0E-71 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PRINTS PR00072 Malic enzyme signature 186 208 3.0E-71 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 Gene3D G3DSA:3.40.50.10380 16 271 4.3E-103 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 SUPERFAMILY SSF53223 5 273 3.45E-102 T 13-10-2018 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 SMART SM00919 274 533 1.1E-123 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 Pfam PF00390 Malic enzyme, N-terminal domain 82 263 1.7E-72 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 PIRSF PIRSF000106 3 563 2.7E-223 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 SMART SM01274 82 264 8.4E-93 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 SUPERFAMILY SSF51735 274 562 3.3E-92 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 Pfam PF03949 Malic enzyme, NAD binding domain 274 532 2.2E-105 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_2014 e1ba1321c33fb916be183a86d6a08512 569 ProSitePatterns PS00331 Malic enzymes signature. 270 286 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BMD_4563 099355901650c3cf9ba3aba896820155 211 Pfam PF12836 Helix-hairpin-helix motif 147 209 8.8E-23 T 13-10-2018 BMD_4563 099355901650c3cf9ba3aba896820155 211 SUPERFAMILY SSF47781 139 210 6.34E-30 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_4563 099355901650c3cf9ba3aba896820155 211 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 149 210 6.1E-29 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain BMD_4563 099355901650c3cf9ba3aba896820155 211 Gene3D G3DSA:3.10.560.10 57 152 6.1E-11 T 13-10-2018 BMD_4563 099355901650c3cf9ba3aba896820155 211 Gene3D G3DSA:1.10.150.310 153 211 9.0E-14 T 13-10-2018 BMD_4563 099355901650c3cf9ba3aba896820155 211 SMART SM00278 188 207 20.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_4563 099355901650c3cf9ba3aba896820155 211 SMART SM00278 158 177 0.4 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BMD_4563 099355901650c3cf9ba3aba896820155 211 Pfam PF10531 SLBB domain 68 117 3.4E-14 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_2875 867ebaf68721f27c7301cc893db45389 219 Gene3D G3DSA:2.60.120.620 20 214 1.3E-64 T 13-10-2018 BMD_2875 867ebaf68721f27c7301cc893db45389 219 SMART SM00702 39 213 9.8E-46 T 13-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 BMD_2875 867ebaf68721f27c7301cc893db45389 219 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 115 213 8.6E-17 T 13-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 SUPERFAMILY SSF158472 175 228 6.8E-6 T 13-10-2018 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 SMART SM00387 339 449 3.2E-39 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 SUPERFAMILY SSF55874 288 447 4.98E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 446 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 402 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 3.4E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 Pfam PF00512 His Kinase A (phospho-acceptor) domain 231 295 7.0E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 SMART SM00304 175 229 1.9E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 Gene3D G3DSA:1.10.287.130 179 298 1.8E-26 T 13-10-2018 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 Gene3D G3DSA:3.30.565.10 299 450 2.8E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 447 7.7E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 SMART SM00388 230 297 1.1E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5011 c1776bcdd06bf9609160c27c86c0fdca 451 SUPERFAMILY SSF47384 213 297 2.94E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 Gene3D G3DSA:2.40.30.20 1 88 9.9E-32 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 Gene3D G3DSA:2.40.30.20 101 202 2.9E-33 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 SUPERFAMILY SSF63380 1 89 4.76E-27 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 PIRSF PIRSF000498 1 210 1.4E-76 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 Pfam PF00677 Lumazine binding domain 99 183 6.9E-23 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 Pfam PF00677 Lumazine binding domain 3 86 2.1E-24 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 SUPERFAMILY SSF63380 92 195 2.21E-31 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BMD_1277 d1e10956ea56877044247f4e6d7b6cdc 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 197 2.9E-75 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_0694 62b1ec52a4cb317f2f9ac826fece8e64 294 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 178 3.5E-15 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BMD_0694 62b1ec52a4cb317f2f9ac826fece8e64 294 SUPERFAMILY SSF51735 3 282 3.49E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0694 62b1ec52a4cb317f2f9ac826fece8e64 294 Gene3D G3DSA:3.40.50.720 3 283 3.9E-27 T 13-10-2018 BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 Hamap MF_00328 Guanylate kinase [gmk]. 3 187 37.285 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 SMART SM00072 4 187 4.0E-74 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 SUPERFAMILY SSF52540 4 190 2.15E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 Gene3D G3DSA:3.40.50.300 9 183 4.6E-68 T 13-10-2018 BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 Gene3D G3DSA:3.30.63.10 37 96 4.6E-68 T 13-10-2018 BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 5 184 2.7E-73 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 BMD_4231 e277bf4dab3e8b4881e4d99e88d2cbd2 204 Pfam PF00625 Guanylate kinase 7 185 2.2E-52 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BMD_4912 6ae9413fbd352134b1482b516ad719a6 202 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 169 1.0E-26 T 13-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_4912 6ae9413fbd352134b1482b516ad719a6 202 SUPERFAMILY SSF75615 111 189 4.45E-16 T 13-10-2018 BMD_4912 6ae9413fbd352134b1482b516ad719a6 202 Pfam PF13241 Putative NAD(P)-binding 4 112 2.6E-24 T 13-10-2018 BMD_4912 6ae9413fbd352134b1482b516ad719a6 202 Gene3D G3DSA:3.40.50.720 1 127 1.4E-34 T 13-10-2018 BMD_4912 6ae9413fbd352134b1482b516ad719a6 202 Gene3D G3DSA:1.10.8.610 128 202 1.6E-28 T 13-10-2018 BMD_4912 6ae9413fbd352134b1482b516ad719a6 202 Pfam PF14824 Sirohaem biosynthesis protein central 116 141 1.9E-8 T 13-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_4912 6ae9413fbd352134b1482b516ad719a6 202 SUPERFAMILY SSF51735 2 96 1.2E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4566 5ad4a779be916ac0b4bbe08258a84c9a 117 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 6.0E-38 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BMD_4566 5ad4a779be916ac0b4bbe08258a84c9a 117 Gene3D G3DSA:3.30.460.10 1 108 8.8E-41 T 13-10-2018 BMD_4566 5ad4a779be916ac0b4bbe08258a84c9a 117 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 2 105 25.895 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BMD_4566 5ad4a779be916ac0b4bbe08258a84c9a 117 SUPERFAMILY SSF81301 1 113 5.07E-42 T 13-10-2018 BMD_4566 5ad4a779be916ac0b4bbe08258a84c9a 117 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 7.2E-28 T 13-10-2018 BMD_1457 10106ebaca7d49d2269e7925d5be36a3 309 SUPERFAMILY SSF161098 88 291 1.42E-19 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1457 10106ebaca7d49d2269e7925d5be36a3 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 303 4.1E-40 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1457 10106ebaca7d49d2269e7925d5be36a3 309 Gene3D G3DSA:1.10.3720.10 83 299 2.4E-21 T 13-10-2018 IPR035906 MetI-like superfamily BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 Pfam PF14527 WhiA LAGLIDADG-like domain 125 217 1.4E-37 T 13-10-2018 IPR039518 WhiA, LAGLIDADG-like domain BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 307 36.022 T 13-10-2018 IPR003802 Sporulation regulator WhiA GO:0043937 BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 Gene3D G3DSA:1.10.10.10 215 309 1.9E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 18 103 9.5E-37 T 13-10-2018 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 SUPERFAMILY SSF55608 120 221 7.37E-20 T 13-10-2018 IPR027434 Homing endonuclease BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 Pfam PF02650 WhiA C-terminal HTH domain 220 304 1.1E-35 T 13-10-2018 IPR023054 Sporulation regulator WhiA, C-terminal BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 Gene3D G3DSA:3.10.28.10 1 214 6.0E-68 T 13-10-2018 IPR027434 Homing endonuclease BMD_5046 a24aa8c6f5de8e28bc9130e89578594e 314 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 4 305 1.4E-133 T 13-10-2018 IPR033981 Sporulation regulator WhiA-like BMD_1499 76166a16e22792bd32a4e77074c9d2b7 267 Pfam PF04231 Endonuclease I 63 256 1.3E-32 T 13-10-2018 IPR007346 Endonuclease I GO:0004518 BMD_1499 76166a16e22792bd32a4e77074c9d2b7 267 SUPERFAMILY SSF54060 115 256 1.53E-37 T 13-10-2018 BMD_0908 c53556dbab10a405ac80f183f655f828 516 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 33 434 6.3E-94 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BMD_0908 c53556dbab10a405ac80f183f655f828 516 Gene3D G3DSA:1.20.1730.10 20 496 1.6E-73 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily BMD_0908 c53556dbab10a405ac80f183f655f828 516 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 148 173 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site BMD_0908 c53556dbab10a405ac80f183f655f828 516 Pfam PF00474 Sodium:solute symporter family 33 434 1.0E-128 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BMD_0998 eb8955274cb7b88f0ae2ead62370baf3 104 SUPERFAMILY SSF103481 6 102 7.59E-20 T 13-10-2018 BMD_0998 eb8955274cb7b88f0ae2ead62370baf3 104 Pfam PF00893 Small Multidrug Resistance protein 1 92 1.3E-26 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BMD_0998 eb8955274cb7b88f0ae2ead62370baf3 104 Gene3D G3DSA:1.10.3730.20 1 104 3.5E-33 T 13-10-2018 BMD_0699 bfaa6674f97b23575fd622bf54983682 340 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 326 1.1E-26 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_0699 bfaa6674f97b23575fd622bf54983682 340 SUPERFAMILY SSF52540 40 313 2.07E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0699 bfaa6674f97b23575fd622bf54983682 340 Pfam PF00005 ABC transporter 32 190 4.6E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0699 bfaa6674f97b23575fd622bf54983682 340 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 242 307 7.3E-19 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_0699 bfaa6674f97b23575fd622bf54983682 340 Gene3D G3DSA:3.40.50.300 9 338 1.2E-98 T 13-10-2018 BMD_0699 bfaa6674f97b23575fd622bf54983682 340 SMART SM00382 40 240 2.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3376 c53d6ebecc3ece6f8c5bb73853d4e570 434 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 237 248 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_3376 c53d6ebecc3ece6f8c5bb73853d4e570 434 SUPERFAMILY SSF53720 9 431 1.1E-124 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_3376 c53d6ebecc3ece6f8c5bb73853d4e570 434 Gene3D G3DSA:3.40.605.10 14 428 2.3E-176 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_3376 c53d6ebecc3ece6f8c5bb73853d4e570 434 Pfam PF00171 Aldehyde dehydrogenase family 22 428 5.2E-97 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_3376 c53d6ebecc3ece6f8c5bb73853d4e570 434 Gene3D G3DSA:3.40.309.10 213 408 2.3E-176 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_3376 c53d6ebecc3ece6f8c5bb73853d4e570 434 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 209 216 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_3376 c53d6ebecc3ece6f8c5bb73853d4e570 434 PIRSF PIRSF036492 1 434 4.1E-184 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 BMD_4303 b439b7f7eef57bbcb05fa3b5d4ec462e 366 SUPERFAMILY SSF51735 5 171 8.2E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4303 b439b7f7eef57bbcb05fa3b5d4ec462e 366 SUPERFAMILY SSF55021 290 360 9.43E-9 T 13-10-2018 BMD_4303 b439b7f7eef57bbcb05fa3b5d4ec462e 366 SUPERFAMILY SSF48179 175 284 8.84E-35 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4303 b439b7f7eef57bbcb05fa3b5d4ec462e 366 Gene3D G3DSA:3.40.50.720 1 181 3.7E-58 T 13-10-2018 BMD_4303 b439b7f7eef57bbcb05fa3b5d4ec462e 366 Gene3D G3DSA:1.10.3660.10 182 296 2.9E-37 T 13-10-2018 BMD_4303 b439b7f7eef57bbcb05fa3b5d4ec462e 366 Gene3D G3DSA:3.30.70.260 297 362 1.9E-5 T 13-10-2018 BMD_4303 b439b7f7eef57bbcb05fa3b5d4ec462e 366 Pfam PF02153 Prephenate dehydrogenase 17 275 1.2E-86 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 BMD_0862 987266a5dac845e4b30e316564f76767 195 SUPERFAMILY SSF48498 80 192 6.08E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_0862 987266a5dac845e4b30e316564f76767 195 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_0862 987266a5dac845e4b30e316564f76767 195 SUPERFAMILY SSF46689 6 80 1.15E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0862 987266a5dac845e4b30e316564f76767 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 3.1E-18 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0862 987266a5dac845e4b30e316564f76767 195 Gene3D G3DSA:1.10.357.10 2 193 5.2E-65 T 13-10-2018 BMD_0862 987266a5dac845e4b30e316564f76767 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0862 987266a5dac845e4b30e316564f76767 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.5E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1953 a17e80c392dc8b290323e17f7ac8346f 186 Gene3D G3DSA:3.40.50.300 2 178 1.4E-46 T 13-10-2018 BMD_1953 a17e80c392dc8b290323e17f7ac8346f 186 PIRSF PIRSF006135 1 181 1.0E-42 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 BMD_1953 a17e80c392dc8b290323e17f7ac8346f 186 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 3 174 5.2E-42 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 BMD_1953 a17e80c392dc8b290323e17f7ac8346f 186 SUPERFAMILY SSF52540 2 177 6.38E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4223 c3b34673be6d6f78ac8564e9416871d2 247 SMART SM00332 1 240 5.9E-17 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_4223 c3b34673be6d6f78ac8564e9416871d2 247 SMART SM00331 7 242 5.3E-52 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_4223 c3b34673be6d6f78ac8564e9416871d2 247 SUPERFAMILY SSF81606 3 242 8.5E-63 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_4223 c3b34673be6d6f78ac8564e9416871d2 247 Pfam PF13672 Protein phosphatase 2C 11 215 6.8E-22 T 13-10-2018 BMD_4223 c3b34673be6d6f78ac8564e9416871d2 247 Gene3D G3DSA:3.60.40.10 1 246 2.2E-71 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_1460 c3039d1f19b30aeeba0c5ad30b28d727 547 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 90 468 2.3E-88 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_1460 c3039d1f19b30aeeba0c5ad30b28d727 547 Gene3D G3DSA:3.10.105.10 302 520 5.7E-178 T 13-10-2018 BMD_1460 c3039d1f19b30aeeba0c5ad30b28d727 547 PIRSF PIRSF002741 5 546 2.2E-129 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_1460 c3039d1f19b30aeeba0c5ad30b28d727 547 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 96 118 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site BMD_1460 c3039d1f19b30aeeba0c5ad30b28d727 547 Gene3D G3DSA:3.40.190.10 59 534 5.7E-178 T 13-10-2018 BMD_1460 c3039d1f19b30aeeba0c5ad30b28d727 547 Gene3D G3DSA:3.90.76.10 80 202 5.7E-178 T 13-10-2018 BMD_1460 c3039d1f19b30aeeba0c5ad30b28d727 547 SUPERFAMILY SSF53850 45 541 3.74E-140 T 13-10-2018 BMD_3678 fee12c4b8e7f9709c85efcc7001c8a51 128 Pfam PF17314 Family of unknown function (DUF5360) 4 126 2.1E-57 T 13-10-2018 IPR020348 Uncharacterised protein family YvaD BMD_3678 fee12c4b8e7f9709c85efcc7001c8a51 128 ProDom PD082409 MEMBRANE YVAD TRANSMEMBRANE 1 120 2.0E-40 T 13-10-2018 IPR020348 Uncharacterised protein family YvaD BMD_4111 a36b22b4e48e541905aac2a19ce9664c 86 Gene3D G3DSA:1.10.760.20 1 82 5.9E-30 T 13-10-2018 IPR038292 YmfJ/YflH superfamily BMD_4111 a36b22b4e48e541905aac2a19ce9664c 86 Pfam PF11588 Protein of unknown function (DUF3243) 2 80 2.0E-34 T 13-10-2018 IPR021637 Protein of unknown function DUF3243 BMD_4111 a36b22b4e48e541905aac2a19ce9664c 86 PIRSF PIRSF004764 1 86 4.5E-28 T 13-10-2018 IPR024702 Uncharacterised conserved protein YmfJ BMD_2927 e3c8f859a5f5af20f314701a29adc53f 195 Gene3D G3DSA:1.10.10.10 1 89 1.2E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2927 e3c8f859a5f5af20f314701a29adc53f 195 SUPERFAMILY SSF46785 3 172 5.1E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2927 e3c8f859a5f5af20f314701a29adc53f 195 Pfam PF03551 Transcriptional regulator PadR-like family 7 82 2.2E-12 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal BMD_4772 2dda8a8afe545e6ac25f76c2f838bdc8 226 SMART SM00849 8 192 3.5E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4772 2dda8a8afe545e6ac25f76c2f838bdc8 226 Gene3D G3DSA:3.60.15.10 2 226 6.9E-73 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4772 2dda8a8afe545e6ac25f76c2f838bdc8 226 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 2 226 38.488 T 13-10-2018 IPR022877 Protein of unknown funcion UPF0173 BMD_4772 2dda8a8afe545e6ac25f76c2f838bdc8 226 Pfam PF13483 Beta-lactamase superfamily domain 4 192 1.5E-26 T 13-10-2018 BMD_4772 2dda8a8afe545e6ac25f76c2f838bdc8 226 SUPERFAMILY SSF56281 1 213 6.55E-34 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_1872 c3a4b995cd282d8a8114f598a99f7694 330 Gene3D G3DSA:3.40.50.970 1 330 6.0E-125 T 13-10-2018 BMD_1872 c3a4b995cd282d8a8114f598a99f7694 330 SUPERFAMILY SSF52518 9 329 7.19E-102 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1872 c3a4b995cd282d8a8114f598a99f7694 330 Pfam PF00676 Dehydrogenase E1 component 22 318 3.3E-96 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 BMD_0367 7bccf9de859bf75480a4da0921371e9c 429 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 5 338 1.6E-121 T 13-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase BMD_0367 7bccf9de859bf75480a4da0921371e9c 429 SUPERFAMILY SSF51905 179 367 7.58E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0367 7bccf9de859bf75480a4da0921371e9c 429 SUPERFAMILY SSF51905 3 249 1.15E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0367 7bccf9de859bf75480a4da0921371e9c 429 Gene3D G3DSA:3.50.50.60 1 421 8.7E-122 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3327 e6c5c46ff5410a4d6a64e39577b35f2b 180 Gene3D G3DSA:3.40.630.30 13 180 2.1E-38 T 13-10-2018 BMD_3327 e6c5c46ff5410a4d6a64e39577b35f2b 180 SUPERFAMILY SSF55729 15 179 3.26E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3327 e6c5c46ff5410a4d6a64e39577b35f2b 180 Pfam PF00583 Acetyltransferase (GNAT) family 63 153 5.5E-14 T 13-10-2018 IPR000182 GNAT domain BMD_0331 04869920885ce2f857246333921a6cb4 174 Pfam PF01965 DJ-1/PfpI family 6 167 1.5E-45 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BMD_0331 04869920885ce2f857246333921a6cb4 174 Gene3D G3DSA:3.40.50.880 2 174 7.1E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0331 04869920885ce2f857246333921a6cb4 174 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 8 171 2.5E-50 T 13-10-2018 IPR006286 Deglycase PfpI BMD_0331 04869920885ce2f857246333921a6cb4 174 SUPERFAMILY SSF52317 6 172 4.11E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_4707 40a5c3077450c6971fabb99a139df31f 74 SUPERFAMILY SSF46894 7 72 2.21E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_4707 40a5c3077450c6971fabb99a139df31f 74 ProSitePatterns PS00622 LuxR-type HTH domain signature. 26 53 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_4707 40a5c3077450c6971fabb99a139df31f 74 Pfam PF00196 Bacterial regulatory proteins, luxR family 12 64 3.4E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_4707 40a5c3077450c6971fabb99a139df31f 74 SMART SM00421 9 66 3.9E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_4707 40a5c3077450c6971fabb99a139df31f 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 26 42 1.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_4707 40a5c3077450c6971fabb99a139df31f 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 42 54 1.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_4707 40a5c3077450c6971fabb99a139df31f 74 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 12 26 1.2E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_4707 40a5c3077450c6971fabb99a139df31f 74 Gene3D G3DSA:1.10.10.10 1 74 1.6E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3223 2d23a73b97eb7685f9a5a16fb547a65f 187 Pfam PF02525 Flavodoxin-like fold 2 176 3.2E-36 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_3223 2d23a73b97eb7685f9a5a16fb547a65f 187 Gene3D G3DSA:3.40.50.360 1 182 1.0E-52 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3223 2d23a73b97eb7685f9a5a16fb547a65f 187 SUPERFAMILY SSF52218 1 180 1.33E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 Gene3D G3DSA:3.40.50.970 1 176 7.6E-64 T 13-10-2018 BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 168 2.5E-55 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 SUPERFAMILY SSF52518 1 178 3.25E-53 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 Gene3D G3DSA:3.40.50.970 355 531 2.4E-47 T 13-10-2018 BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 Gene3D G3DSA:3.40.50.1220 184 351 5.0E-38 T 13-10-2018 BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 318 4.8E-32 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 527 5.1E-32 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 SUPERFAMILY SSF52518 357 529 4.32E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1683 b6b6eebe0b5f0eabea61685ccd1bf314 531 SUPERFAMILY SSF52467 153 331 2.7E-36 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_3437 059817334c5a51604a55a4772810d852 96 Pfam PF07883 Cupin domain 14 74 9.6E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_3437 059817334c5a51604a55a4772810d852 96 SUPERFAMILY SSF51182 8 79 4.74E-11 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_3437 059817334c5a51604a55a4772810d852 96 Gene3D G3DSA:2.60.120.10 2 92 6.2E-12 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_4090 87b091e0ac5b7fabdf66ff1e1a142620 203 Pfam PF03458 UPF0126 domain 92 160 3.2E-18 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 BMD_4090 87b091e0ac5b7fabdf66ff1e1a142620 203 Pfam PF03458 UPF0126 domain 5 78 1.5E-18 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 BMD_4255 25577e74c09e718da15428ed080b1c6d 273 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 37 270 2.4E-58 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BMD_4255 25577e74c09e718da15428ed080b1c6d 273 Gene3D G3DSA:3.60.140.10 6 273 2.1E-91 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily BMD_4255 25577e74c09e718da15428ed080b1c6d 273 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 32 268 7.5E-72 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BMD_4255 25577e74c09e718da15428ed080b1c6d 273 SUPERFAMILY SSF64438 14 272 7.69E-80 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 SMART SM00866 95 235 8.7E-29 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 1.8E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 8.7E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 8.7E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 SUPERFAMILY SSF46785 4 81 3.07E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 Pfam PF07702 UTRA domain 96 234 7.7E-33 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 SMART SM00345 15 74 8.4E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 Gene3D G3DSA:1.10.10.10 7 74 8.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 Gene3D G3DSA:3.40.1410.10 75 242 1.8E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_2373 def2dd8dee99b8700d2f63253f79d721 243 SUPERFAMILY SSF64288 62 239 2.2E-44 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 PIRSF PIRSF038928 1 482 6.4E-231 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 SUPERFAMILY SSF56634 3 483 1.7E-223 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 SMART SM01060 9 393 0.0 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 Pfam PF00199 Catalase 9 390 1.3E-201 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 335 343 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 Pfam PF06628 Catalase-related immune-responsive 415 477 2.2E-26 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 PRINTS PR00067 Catalase signature 322 348 7.0E-78 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 PRINTS PR00067 Catalase signature 85 103 7.0E-78 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 PRINTS PR00067 Catalase signature 290 317 7.0E-78 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 PRINTS PR00067 Catalase signature 106 123 7.0E-78 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 PRINTS PR00067 Catalase signature 125 143 7.0E-78 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 PRINTS PR00067 Catalase signature 22 45 7.0E-78 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 Gene3D G3DSA:2.40.180.10 1 484 7.8E-238 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BMD_5226 b2fcb28f499d91fcc0ce31998e9a4385 486 ProSitePatterns PS00438 Catalase proximal active site signature. 45 61 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_2833 f9423650069da74cd23623355e7369d9 443 TIGRFAM TIGR00366 TIGR00366: TIGR00366 family protein 4 430 5.0E-183 T 13-10-2018 IPR006161 Conserved hypothetical protein CHP00336 BMD_2833 f9423650069da74cd23623355e7369d9 443 Pfam PF02667 Short chain fatty acid transporter 2 443 1.4E-186 T 13-10-2018 IPR006160 Short chain fatty acid transporter AtoE BMD_2742 3c9ec0468742ca8a46c27ad5408c29e9 248 ProDom PD315856 ORF119 CPE0798 YOXB 22 234 1.0E-60 T 13-10-2018 IPR020530 Uncharacterised protein family, YoxB BMD_2182 779595db8938ae873f13e6c64b6620a7 319 Gene3D G3DSA:3.40.50.2300 158 285 2.0E-60 T 13-10-2018 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 Gene3D G3DSA:3.40.50.2300 60 298 2.0E-60 T 13-10-2018 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 4.1E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.1E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.1E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 Pfam PF13377 Periplasmic binding protein-like domain 168 319 1.6E-24 T 13-10-2018 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 SUPERFAMILY SSF47413 1 60 1.29E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 Gene3D G3DSA:1.10.260.40 3 59 2.3E-20 T 13-10-2018 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 SMART SM00354 1 71 1.5E-29 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2182 779595db8938ae873f13e6c64b6620a7 319 SUPERFAMILY SSF53822 58 310 1.74E-57 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_1297 29b734516b07670e1bab87ac31a40ba6 155 Pfam PF14177 YkyB-like protein 14 151 1.2E-62 T 13-10-2018 IPR025552 YkyB-like protein BMD_4700 6ab66413312a486e518e507a6f96d417 184 Gene3D G3DSA:3.40.50.360 2 184 5.6E-46 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_4700 6ab66413312a486e518e507a6f96d417 184 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 4 171 1.1E-64 T 13-10-2018 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 BMD_4700 6ab66413312a486e518e507a6f96d417 184 SUPERFAMILY SSF52218 3 173 1.07E-32 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_4700 6ab66413312a486e518e507a6f96d417 184 Pfam PF03358 NADPH-dependent FMN reductase 3 143 2.3E-32 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BMD_1233 36e450e5054428c87c95bee21c03c897 390 Gene3D G3DSA:3.40.640.10 45 286 1.3E-119 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1233 36e450e5054428c87c95bee21c03c897 390 SUPERFAMILY SSF53383 7 387 6.53E-109 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1233 36e450e5054428c87c95bee21c03c897 390 Gene3D G3DSA:3.90.1150.10 30 384 1.3E-119 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1233 36e450e5054428c87c95bee21c03c897 390 Pfam PF00155 Aminotransferase class I and II 34 384 5.2E-73 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_5235 59087b72df562659f298320682650620 280 Pfam PF03413 Peptidase propeptide and YPEB domain 55 109 5.3E-4 T 13-10-2018 IPR025711 PepSY domain BMD_5235 59087b72df562659f298320682650620 280 Pfam PF03413 Peptidase propeptide and YPEB domain 171 224 1.6E-4 T 13-10-2018 IPR025711 PepSY domain BMD_5235 59087b72df562659f298320682650620 280 Pfam PF03413 Peptidase propeptide and YPEB domain 230 279 0.0022 T 13-10-2018 IPR025711 PepSY domain BMD_5235 59087b72df562659f298320682650620 280 Pfam PF03413 Peptidase propeptide and YPEB domain 114 165 0.0022 T 13-10-2018 IPR025711 PepSY domain BMD_5235 59087b72df562659f298320682650620 280 SUPERFAMILY SSF50960 61 278 1.83E-5 T 13-10-2018 BMD_5235 59087b72df562659f298320682650620 280 Gene3D G3DSA:3.10.450.40 168 226 3.1E-7 T 13-10-2018 BMD_5235 59087b72df562659f298320682650620 280 Gene3D G3DSA:3.10.450.40 45 110 2.0E-7 T 13-10-2018 BMD_5235 59087b72df562659f298320682650620 280 Gene3D G3DSA:3.10.450.40 112 167 2.0E-5 T 13-10-2018 BMD_3377 edadb7f4d53970cd5b69c24a35b2a416 456 Pfam PF10011 Predicted membrane protein (DUF2254) 24 391 3.8E-93 T 13-10-2018 IPR018723 Protein of unknown function DUF2254, membrane BMD_3092 5b13e3f1a2ae78b20355afde3f715ebb 271 Gene3D G3DSA:3.30.750.24 154 270 1.3E-34 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3092 5b13e3f1a2ae78b20355afde3f715ebb 271 SUPERFAMILY SSF52091 159 268 5.3E-18 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3092 5b13e3f1a2ae78b20355afde3f715ebb 271 Pfam PF01740 STAS domain 160 263 1.1E-11 T 13-10-2018 IPR002645 STAS domain BMD_4080 b68d3aa445843c727d7bd988777c8986 118 Pfam PF04138 GtrA-like protein 2 106 4.3E-23 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 192 488 2.1E-113 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 Gene3D G3DSA:3.40.50.720 4 177 2.8E-64 T 13-10-2018 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 SUPERFAMILY SSF51735 6 192 1.63E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5196 0902da33caedbbcc557272ef56c978e1 500 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 7 490 86.995 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 PIRSF PIRSF000110 1 492 1.4E-187 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 13-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 Gene3D G3DSA:3.30.360.10 178 490 2.0E-122 T 13-10-2018 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 11 189 2.9E-65 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 3.7E-46 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 3.7E-46 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 330 356 3.7E-46 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 3.7E-46 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 3.7E-46 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 7 489 1.6E-200 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BMD_5196 0902da33caedbbcc557272ef56c978e1 500 SUPERFAMILY SSF55347 184 489 3.6E-112 T 13-10-2018 BMD_1022 ab3204ead831a6899875b94c58cffadd 111 PIRSF PIRSF000699 1 109 1.8E-37 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BMD_1022 ab3204ead831a6899875b94c58cffadd 111 Gene3D G3DSA:1.20.58.280 2 108 1.4E-36 T 13-10-2018 BMD_1022 ab3204ead831a6899875b94c58cffadd 111 SUPERFAMILY SSF46973 5 103 3.01E-34 T 13-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 BMD_1022 ab3204ead831a6899875b94c58cffadd 111 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 11 102 1.5E-34 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BMD_3991 0d16c4b20b0143d7c12d5aa37dca5970 251 Pfam PF12695 Alpha/beta hydrolase family 68 230 7.0E-58 T 13-10-2018 IPR029059 Alpha/beta hydrolase fold-5 BMD_3991 0d16c4b20b0143d7c12d5aa37dca5970 251 SUPERFAMILY SSF53474 68 246 3.89E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3991 0d16c4b20b0143d7c12d5aa37dca5970 251 Gene3D G3DSA:3.40.50.1820 33 250 5.7E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2590 1517e33dfc8052859feafba37e77a1a1 179 Gene3D G3DSA:3.40.1580.10 27 165 7.7E-17 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily BMD_2590 1517e33dfc8052859feafba37e77a1a1 179 SUPERFAMILY SSF160631 29 164 3.27E-17 T 13-10-2018 BMD_2590 1517e33dfc8052859feafba37e77a1a1 179 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 39 112 1.4E-10 T 13-10-2018 IPR018958 Knr4/Smi1-like domain BMD_2590 1517e33dfc8052859feafba37e77a1a1 179 SMART SM00860 39 150 2.3E-7 T 13-10-2018 IPR018958 Knr4/Smi1-like domain BMD_3696 f42091adabf9f3943134b4031a854743 650 Pfam PF02378 Phosphotransferase system, EIIC 121 402 1.0E-35 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_3696 f42091adabf9f3943134b4031a854743 650 Gene3D G3DSA:2.70.70.10 487 647 7.0E-58 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_3696 f42091adabf9f3943134b4031a854743 650 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 562 574 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_3696 f42091adabf9f3943134b4031a854743 650 SUPERFAMILY SSF55604 7 74 8.76E-17 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_3696 f42091adabf9f3943134b4031a854743 650 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 503 620 7.6E-44 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_3696 f42091adabf9f3943134b4031a854743 650 SUPERFAMILY SSF51261 502 631 1.48E-52 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_3696 f42091adabf9f3943134b4031a854743 650 Pfam PF00367 phosphotransferase system, EIIB 9 42 2.8E-12 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_3696 f42091adabf9f3943134b4031a854743 650 Gene3D G3DSA:3.30.1360.60 1 77 2.4E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_3696 f42091adabf9f3943134b4031a854743 650 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 502 622 4.7E-50 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 SMART SM01003 4 136 1.5E-77 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 Gene3D G3DSA:3.40.50.720 129 305 5.3E-141 T 13-10-2018 BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 Gene3D G3DSA:3.40.50.720 3 353 5.3E-141 T 13-10-2018 BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 352 1.2E-82 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 8.4E-47 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 172 197 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 SMART SM01002 148 297 2.6E-90 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 1.0E-185 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 SUPERFAMILY SSF51735 136 303 1.34E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 PIRSF PIRSF000183 1 371 3.7E-191 T 13-10-2018 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 BMD_5199 666d0639dd851af5580f4d2555eef2b4 377 SUPERFAMILY SSF52283 1 360 1.7E-64 T 13-10-2018 BMD_1352 b79402bf62b04180ad5f89f0b8339842 306 Gene3D G3DSA:1.10.357.140 33 188 1.6E-14 T 13-10-2018 BMD_1352 b79402bf62b04180ad5f89f0b8339842 306 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 24 302 2.4E-92 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BMD_1352 b79402bf62b04180ad5f89f0b8339842 306 Pfam PF01040 UbiA prenyltransferase family 40 288 2.2E-56 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BMD_1352 b79402bf62b04180ad5f89f0b8339842 306 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 21 304 17.826 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BMD_1352 b79402bf62b04180ad5f89f0b8339842 306 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 81 103 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site BMD_1462 cc6c94645ee86b297c0c671ffef8ca3e 303 Gene3D G3DSA:3.90.1720.10 174 303 6.8E-36 T 13-10-2018 BMD_1462 cc6c94645ee86b297c0c671ffef8ca3e 303 Gene3D G3DSA:2.30.30.40 1 114 2.0E-39 T 13-10-2018 BMD_1462 cc6c94645ee86b297c0c671ffef8ca3e 303 Gene3D G3DSA:2.30.30.40 115 173 1.1E-6 T 13-10-2018 BMD_1462 cc6c94645ee86b297c0c671ffef8ca3e 303 Pfam PF00877 NlpC/P60 family 196 301 2.1E-24 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_1462 cc6c94645ee86b297c0c671ffef8ca3e 303 SUPERFAMILY SSF54001 178 302 2.7E-37 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Pfam PF00009 Elongation factor Tu GTP binding domain 7 232 9.0E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 SMART SM00838 527 616 2.8E-6 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Pfam PF00679 Elongation factor G C-terminus 528 609 4.7E-18 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR00315 GTP-binding elongation factor signature 7 20 7.7E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR00315 GTP-binding elongation factor signature 53 61 7.7E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR00315 GTP-binding elongation factor signature 73 83 7.7E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR00315 GTP-binding elongation factor signature 125 134 7.7E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR00315 GTP-binding elongation factor signature 89 100 7.7E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 SUPERFAMILY SSF54980 528 609 1.97E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 SUPERFAMILY SSF50447 219 336 2.44E-14 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 SUPERFAMILY SSF52540 5 229 1.49E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Gene3D G3DSA:3.40.50.300 2 241 4.3E-67 T 13-10-2018 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Gene3D G3DSA:3.30.70.240 531 601 2.2E-41 T 13-10-2018 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Gene3D G3DSA:3.30.230.10 432 609 2.2E-41 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 SUPERFAMILY SSF54980 338 412 5.76E-12 T 13-10-2018 IPR035647 EF-G domain III/V-like BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 261 287 1.4E-13 T 13-10-2018 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 111 134 1.4E-13 T 13-10-2018 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 PRINTS PR01037 Tetracycline resistance protein TetO/TetQ/TetM family signature 208 230 1.4E-13 T 13-10-2018 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Pfam PF03764 Elongation factor G, domain IV 410 525 2.1E-21 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 SMART SM00889 411 525 1.4E-23 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 SUPERFAMILY SSF54211 410 525 1.63E-27 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Gene3D G3DSA:2.40.30.10 242 338 9.4E-15 T 13-10-2018 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 158 2.7E-22 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Gene3D G3DSA:3.30.70.870 346 414 6.6E-10 T 13-10-2018 BMD_2447 2857ccfabb4bdbfad09a998b7d72193e 653 Pfam PF14492 Elongation Factor G, domain II 359 408 8.1E-8 T 13-10-2018 BMD_0351 a941ac6c6410dbc515707e1c94ca636f 434 Gene3D G3DSA:1.25.40.680 240 400 3.3E-49 T 13-10-2018 BMD_0351 a941ac6c6410dbc515707e1c94ca636f 434 Pfam PF10140 WXG100 protein secretion system (Wss), protein YukC 28 382 4.2E-117 T 13-10-2018 IPR018778 Type VII secretion system EssB BMD_0351 a941ac6c6410dbc515707e1c94ca636f 434 TIGRFAM TIGR03926 T7_EssB: type VII secretion protein EssB 8 382 4.8E-118 T 13-10-2018 IPR018778 Type VII secretion system EssB BMD_0351 a941ac6c6410dbc515707e1c94ca636f 434 Gene3D G3DSA:1.10.510.10 1 217 1.1E-81 T 13-10-2018 BMD_1425 a36adc241f470ec616c766ac84d8a7cf 270 Gene3D G3DSA:1.10.3720.10 3 262 7.9E-55 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1425 a36adc241f470ec616c766ac84d8a7cf 270 SUPERFAMILY SSF161098 6 270 1.2E-64 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1425 a36adc241f470ec616c766ac84d8a7cf 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 264 3.5E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_4048 d7088d452dfd68714b4702c47dc1581d 601 Pfam PF04183 IucA / IucC family 142 392 7.8E-73 T 13-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 BMD_4048 d7088d452dfd68714b4702c47dc1581d 601 Gene3D G3DSA:1.10.510.40 381 582 1.2E-60 T 13-10-2018 BMD_4048 d7088d452dfd68714b4702c47dc1581d 601 Pfam PF06276 Ferric iron reductase FhuF-like transporter 414 573 3.2E-41 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain BMD_4048 d7088d452dfd68714b4702c47dc1581d 601 Gene3D G3DSA:1.10.274.90 2 134 1.6E-20 T 13-10-2018 BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 SMART SM00345 8 67 5.1E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 Pfam PF00155 Aminotransferase class I and II 91 436 2.6E-26 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 SUPERFAMILY SSF46785 4 69 2.72E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 Gene3D G3DSA:1.10.10.10 2 69 4.6E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 SUPERFAMILY SSF53383 65 440 2.48E-74 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 1.1E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 Gene3D G3DSA:3.40.640.10 115 334 2.6E-89 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3003 28db41c131b7b8477fa538b9925bbe24 458 Gene3D G3DSA:3.90.1150.10 75 440 2.6E-89 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4067 fa235d2bdb726b5f92c395ca62018d93 248 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 22 227 6.1E-62 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 SMART SM00420 6 58 2.2E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.6E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.6E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 SMART SM01134 69 228 1.3E-52 T 13-10-2018 BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 3.1E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 Pfam PF00455 DeoR C terminal sensor domain 72 226 4.0E-44 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 Gene3D G3DSA:1.10.10.10 7 61 2.5E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 SUPERFAMILY SSF100950 72 228 1.36E-27 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_2682 6e3c3b5f83e74f11fc71cfd953729846 256 SUPERFAMILY SSF46785 4 60 7.18E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4988 2fdec8168f167e13c3ad1e8f026632de 127 SUPERFAMILY SSF51230 3 125 1.41E-47 T 13-10-2018 IPR011053 Single hybrid motif BMD_4988 2fdec8168f167e13c3ad1e8f026632de 127 Pfam PF01597 Glycine cleavage H-protein 7 126 5.8E-52 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate BMD_4988 2fdec8168f167e13c3ad1e8f026632de 127 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BMD_4988 2fdec8168f167e13c3ad1e8f026632de 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 125 41.459 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 BMD_4988 2fdec8168f167e13c3ad1e8f026632de 127 Gene3D G3DSA:2.40.50.100 2 127 3.2E-54 T 13-10-2018 BMD_4988 2fdec8168f167e13c3ad1e8f026632de 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 1.0E-59 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 BMD_0163 f8ebfc302494ba2f1671b2a2e34d95fd 289 TIGRFAM TIGR04521 ECF_ATPase_2: energy-coupling factor transporter ATPase 3 280 1.5E-124 T 13-10-2018 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 BMD_0163 f8ebfc302494ba2f1671b2a2e34d95fd 289 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0163 f8ebfc302494ba2f1671b2a2e34d95fd 289 Pfam PF00005 ABC transporter 23 174 1.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0163 f8ebfc302494ba2f1671b2a2e34d95fd 289 SMART SM00382 32 223 4.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0163 f8ebfc302494ba2f1671b2a2e34d95fd 289 SUPERFAMILY SSF52540 7 237 4.99E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0163 f8ebfc302494ba2f1671b2a2e34d95fd 289 Gene3D G3DSA:3.40.50.300 2 287 1.5E-78 T 13-10-2018 BMD_0927 2a19ee17d58d279009a03aef3d121b33 414 Gene3D G3DSA:2.40.40.10 239 407 5.9E-6 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_0927 2a19ee17d58d279009a03aef3d121b33 414 SUPERFAMILY SSF50685 355 403 1.64E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_0927 2a19ee17d58d279009a03aef3d121b33 414 Pfam PF06725 3D domain 354 414 4.1E-18 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 BMD_5071 ed48500f31a78199a8e23ff55f4de8c9 304 Gene3D G3DSA:3.20.20.530 18 304 7.4E-96 T 13-10-2018 BMD_5071 ed48500f31a78199a8e23ff55f4de8c9 304 Pfam PF01619 Proline dehydrogenase 44 297 6.4E-37 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 BMD_5071 ed48500f31a78199a8e23ff55f4de8c9 304 PIRSF PIRSF000196 1 304 3.1E-128 T 13-10-2018 IPR008219 Proline dehydrogenase, bacteria and archaea GO:0004657|GO:0010133 KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 BMD_5071 ed48500f31a78199a8e23ff55f4de8c9 304 SUPERFAMILY SSF51730 37 300 1.37E-74 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like BMD_0864 a518ca1138bc837768c778564012ca5d 458 Pfam PF00202 Aminotransferase class-III 76 452 6.8E-107 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0864 a518ca1138bc837768c778564012ca5d 458 PIRSF PIRSF000521 27 175 6.1E-6 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0864 a518ca1138bc837768c778564012ca5d 458 PIRSF PIRSF000521 218 455 3.1E-41 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0864 a518ca1138bc837768c778564012ca5d 458 PIRSF PIRSF000521 171 210 2.7 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0864 a518ca1138bc837768c778564012ca5d 458 Gene3D G3DSA:3.40.640.10 106 356 5.9E-182 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0864 a518ca1138bc837768c778564012ca5d 458 SUPERFAMILY SSF53383 78 455 1.71E-126 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0864 a518ca1138bc837768c778564012ca5d 458 Gene3D G3DSA:3.90.1150.10 41 451 5.9E-182 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0864 a518ca1138bc837768c778564012ca5d 458 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 271 308 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Gene3D G3DSA:1.10.1790.20 950 1128 4.0E-67 T 13-10-2018 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 SMART SM00663 224 503 2.9E-186 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Gene3D G3DSA:1.10.132.30 657 794 7.3E-58 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1181 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 4 1191 18.655 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 SUPERFAMILY SSF64484 5 1191 0.0 T 13-10-2018 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Gene3D G3DSA:1.10.274.100 479 656 5.6E-46 T 13-10-2018 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Gene3D G3DSA:1.10.40.90 363 405 7.9E-24 T 13-10-2018 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Pfam PF04998 RNA polymerase Rpb1, domain 5 770 1129 1.4E-67 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Pfam PF04997 RNA polymerase Rpb1, domain 1 6 331 8.7E-89 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Gene3D G3DSA:2.40.50.100 966 1029 4.0E-67 T 13-10-2018 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Pfam PF00623 RNA polymerase Rpb1, domain 2 333 474 2.7E-38 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Pfam PF04983 RNA polymerase Rpb1, domain 3 478 663 1.1E-36 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Pfam PF05000 RNA polymerase Rpb1, domain 4 692 760 4.7E-14 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0127 a33f3ed0d31a8fe127ffb51f8368c113 1197 Gene3D G3DSA:1.10.150.390 1130 1192 6.7E-29 T 13-10-2018 BMD_4397 ef71915df64e75ab1aad2f2cd41a531c 71 Gene3D G3DSA:3.40.5.90 2 66 5.0E-15 T 13-10-2018 BMD_4397 ef71915df64e75ab1aad2f2cd41a531c 71 SMART SM00704 25 60 9.3E-4 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 BMD_4397 ef71915df64e75ab1aad2f2cd41a531c 71 Pfam PF09360 Iron-binding zinc finger CDGSH type 11 55 1.3E-18 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 BMD_3354 3e82e757ab83714cfa2953629c275490 290 SUPERFAMILY SSF46785 3 110 1.85E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3354 3e82e757ab83714cfa2953629c275490 290 Pfam PF03466 LysR substrate binding domain 89 285 3.5E-37 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3354 3e82e757ab83714cfa2953629c275490 290 Gene3D G3DSA:3.40.190.290 90 287 5.3E-44 T 13-10-2018 BMD_3354 3e82e757ab83714cfa2953629c275490 290 SUPERFAMILY SSF53850 90 287 9.42E-36 T 13-10-2018 BMD_3354 3e82e757ab83714cfa2953629c275490 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 2.5E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3354 3e82e757ab83714cfa2953629c275490 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3354 3e82e757ab83714cfa2953629c275490 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3354 3e82e757ab83714cfa2953629c275490 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3354 3e82e757ab83714cfa2953629c275490 290 Gene3D G3DSA:1.10.10.10 1 88 4.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 Gene3D G3DSA:1.10.10.10 1 55 4.4E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 7.1E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 SUPERFAMILY SSF100950 74 230 5.13E-33 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 SMART SM00420 6 58 2.8E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 SMART SM01134 71 231 4.3E-60 T 13-10-2018 BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 Pfam PF00455 DeoR C terminal sensor domain 73 230 2.5E-47 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 SUPERFAMILY SSF46785 4 58 3.64E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 9.4E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3467 d5994b7d96f5086c139a6f036adfbd7f 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 9.4E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BMD_3869 a334d97978de79d7802d085f6657252d 772 Gene3D G3DSA:3.40.50.300 202 365 1.6E-8 T 13-10-2018 BMD_3869 a334d97978de79d7802d085f6657252d 772 Gene3D G3DSA:3.40.50.300 603 771 1.5E-54 T 13-10-2018 BMD_3869 a334d97978de79d7802d085f6657252d 772 Gene3D G3DSA:3.40.50.300 503 600 4.1E-8 T 13-10-2018 BMD_3869 a334d97978de79d7802d085f6657252d 772 SUPERFAMILY SSF52540 203 758 9.86E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3869 a334d97978de79d7802d085f6657252d 772 Pfam PF13538 UvrD-like helicase C-terminal domain 709 751 1.1E-8 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain BMD_3869 a334d97978de79d7802d085f6657252d 772 Pfam PF13245 AAA domain 215 578 1.7E-10 T 13-10-2018 BMD_3646 ef534a20ae58880cc06dccfbb57c64e4 260 Gene3D G3DSA:3.40.630.30 123 248 6.7E-35 T 13-10-2018 BMD_3646 ef534a20ae58880cc06dccfbb57c64e4 260 Pfam PF12746 GNAT acetyltransferase 21 257 4.0E-53 T 13-10-2018 IPR027365 GNAT acetyltransferase YdfB-like BMD_3646 ef534a20ae58880cc06dccfbb57c64e4 260 SUPERFAMILY SSF55729 133 257 1.27E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4652 711a7e0459f2e74633122705708cd810 227 SUPERFAMILY SSF63848 106 206 1.12E-29 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 BMD_4652 711a7e0459f2e74633122705708cd810 227 Gene3D G3DSA:2.160.20.70 100 227 2.0E-36 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 BMD_4652 711a7e0459f2e74633122705708cd810 227 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 107 207 2.9E-31 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 BMD_4652 711a7e0459f2e74633122705708cd810 227 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 9 209 6.9E-38 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 BMD_4652 711a7e0459f2e74633122705708cd810 227 Gene3D G3DSA:3.30.160.540 7 86 3.5E-27 T 13-10-2018 BMD_4652 711a7e0459f2e74633122705708cd810 227 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 8 211 21.847 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 BMD_2755 a5e2a41265e6feb17f473c142a99ce09 246 Gene3D G3DSA:1.10.3810.10 54 238 1.1E-89 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_2755 a5e2a41265e6feb17f473c142a99ce09 246 Pfam PF00912 Transglycosylase 49 218 4.9E-68 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_2755 a5e2a41265e6feb17f473c142a99ce09 246 SUPERFAMILY SSF53955 53 241 1.01E-74 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily BMD_4605 bd8e61c4d916cc8ce26781514ffcc70a 380 SUPERFAMILY SSF53383 3 376 1.06E-100 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4605 bd8e61c4d916cc8ce26781514ffcc70a 380 Pfam PF00266 Aminotransferase class-V 4 366 3.5E-79 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_4605 bd8e61c4d916cc8ce26781514ffcc70a 380 Gene3D G3DSA:3.40.640.10 61 235 1.2E-138 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4605 bd8e61c4d916cc8ce26781514ffcc70a 380 Gene3D G3DSA:3.90.1150.10 4 369 1.2E-138 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4605 bd8e61c4d916cc8ce26781514ffcc70a 380 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 193 212 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BMD_4605 bd8e61c4d916cc8ce26781514ffcc70a 380 PIRSF PIRSF005572 1 380 6.9E-121 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BMD_4605 bd8e61c4d916cc8ce26781514ffcc70a 380 Gene3D G3DSA:1.10.260.50 15 278 1.2E-138 T 13-10-2018 BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 PIRSF PIRSF019345 1 189 6.6E-57 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 5 187 8.2E-55 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 SUPERFAMILY SSF46785 83 157 2.99E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 SUPERFAMILY SSF46785 2 79 4.84E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 Pfam PF04079 Segregation and condensation complex subunit ScpB 8 166 5.0E-56 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 Gene3D G3DSA:1.10.10.10 82 178 1.2E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 Hamap MF_01804 Segregation and condensation protein B [scpB]. 4 182 34.252 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 BMD_4362 bea52f74a71a52bfd7a1d37857863742 190 Gene3D G3DSA:1.10.10.10 1 81 3.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4229 80d94b8f6c32ccbdb52792b406ede7e7 405 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 370 8.6E-74 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BMD_4229 80d94b8f6c32ccbdb52792b406ede7e7 405 SUPERFAMILY SSF52507 1 177 6.93E-62 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BMD_4229 80d94b8f6c32ccbdb52792b406ede7e7 405 Gene3D G3DSA:3.40.50.10300 188 404 1.8E-85 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BMD_4229 80d94b8f6c32ccbdb52792b406ede7e7 405 Gene3D G3DSA:3.40.50.1950 1 187 7.2E-61 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BMD_4229 80d94b8f6c32ccbdb52792b406ede7e7 405 Pfam PF02441 Flavoprotein 5 174 1.2E-45 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 BMD_4229 80d94b8f6c32ccbdb52792b406ede7e7 405 SUPERFAMILY SSF102645 187 401 5.49E-75 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BMD_4229 80d94b8f6c32ccbdb52792b406ede7e7 405 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 3 396 2.0E-154 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 144 733 6.3E-176 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 Pfam PF02867 Ribonucleotide reductase, barrel domain 221 730 5.7E-147 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 217 3.4E-19 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 SUPERFAMILY SSF51998 220 745 2.5E-168 T 13-10-2018 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 604 626 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 SUPERFAMILY SSF48168 10 219 7.32E-58 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 Gene3D G3DSA:3.20.70.20 71 740 7.7E-208 T 13-10-2018 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 PRINTS PR01183 Ribonucleotide reductase large chain signature 437 448 4.0E-37 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 PRINTS PR01183 Ribonucleotide reductase large chain signature 554 577 4.0E-37 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 PRINTS PR01183 Ribonucleotide reductase large chain signature 615 642 4.0E-37 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 PRINTS PR01183 Ribonucleotide reductase large chain signature 488 511 4.0E-37 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 PRINTS PR01183 Ribonucleotide reductase large chain signature 526 548 4.0E-37 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4872 fa3869584141c3b501fa7a58d0ac4c22 747 PRINTS PR01183 Ribonucleotide reductase large chain signature 296 315 4.0E-37 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_0220 6fd240721174e7e62beece52a7897321 396 Gene3D G3DSA:3.20.20.10 24 245 6.6E-131 T 13-10-2018 IPR029066 PLP-binding barrel BMD_0220 6fd240721174e7e62beece52a7897321 396 Hamap MF_01201 Alanine racemase. 15 382 34.719 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 Pfam PF01168 Alanine racemase, N-terminal domain 22 242 1.3E-63 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 SUPERFAMILY SSF50621 252 393 1.74E-51 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BMD_0220 6fd240721174e7e62beece52a7897321 396 Gene3D G3DSA:2.40.37.10 19 381 6.6E-131 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BMD_0220 6fd240721174e7e62beece52a7897321 396 Pfam PF00842 Alanine racemase, C-terminal domain 258 381 8.7E-46 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 SMART SM01005 257 382 8.4E-70 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 215 242 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 364 377 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 290 305 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 172 183 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 137 149 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 77 95 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 310 327 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 41 57 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 PRINTS PR00992 Alanine racemase signature 273 288 3.8E-69 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 46 56 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_0220 6fd240721174e7e62beece52a7897321 396 SUPERFAMILY SSF51419 22 249 9.59E-62 T 13-10-2018 IPR029066 PLP-binding barrel BMD_0220 6fd240721174e7e62beece52a7897321 396 TIGRFAM TIGR00492 alr: alanine racemase 16 382 1.5E-126 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_1542 30ea77e4089de3bd1fb3824f7199a736 154 Gene3D G3DSA:3.40.1510.10 5 154 1.2E-61 T 13-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily BMD_1542 30ea77e4089de3bd1fb3824f7199a736 154 Pfam PF09021 HutP 14 152 5.8E-31 T 13-10-2018 IPR015111 Hut operon regulatory protein HutP BMD_1542 30ea77e4089de3bd1fb3824f7199a736 154 SUPERFAMILY SSF111064 14 154 4.18E-41 T 13-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily BMD_5033 aa49e2f331b8f61c7759985682688c0b 77 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 75 4.6E-22 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BMD_5033 aa49e2f331b8f61c7759985682688c0b 77 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 1.1E-11 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BMD_5033 aa49e2f331b8f61c7759985682688c0b 77 PRINTS PR01651 Protein-export SecG membrane protein signature 56 77 1.1E-11 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BMD_5033 aa49e2f331b8f61c7759985682688c0b 77 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 1.1E-11 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BMD_5033 aa49e2f331b8f61c7759985682688c0b 77 Pfam PF03840 Preprotein translocase SecG subunit 4 74 8.3E-21 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BMD_5007 babe4cf22f4b35b424f50cf1fbf7ca46 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 39 122 3.0E-16 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BMD_5007 babe4cf22f4b35b424f50cf1fbf7ca46 143 Gene3D G3DSA:1.20.1290.10 3 132 5.3E-38 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_5007 babe4cf22f4b35b424f50cf1fbf7ca46 143 SUPERFAMILY SSF69118 27 132 3.2E-29 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_0218 25ee03faf45516b37492a514252a31e9 121 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 118 25.961 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BMD_0218 25ee03faf45516b37492a514252a31e9 121 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 120 3.8E-43 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BMD_0218 25ee03faf45516b37492a514252a31e9 121 Gene3D G3DSA:3.90.470.20 1 121 2.2E-40 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BMD_0218 25ee03faf45516b37492a514252a31e9 121 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 119 3.0E-33 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BMD_0218 25ee03faf45516b37492a514252a31e9 121 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 118 5.6E-33 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BMD_0218 25ee03faf45516b37492a514252a31e9 121 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 113 8.3E-23 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BMD_0218 25ee03faf45516b37492a514252a31e9 121 SUPERFAMILY SSF56214 1 117 2.09E-36 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 SMART SM00342 148 231 1.4E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 Pfam PF12833 Helix-turn-helix domain 154 231 4.4E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 Gene3D G3DSA:1.10.10.60 182 236 1.2E-18 T 13-10-2018 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 185 227 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 Gene3D G3DSA:1.10.10.60 132 181 7.8E-11 T 13-10-2018 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 Gene3D G3DSA:2.60.120.10 6 92 4.0E-7 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_2171 69670006f979267bd64b06c0542e7c6b 238 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 200 215 2.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 231 2.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 SUPERFAMILY SSF51182 16 75 7.37E-7 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_2171 69670006f979267bd64b06c0542e7c6b 238 SUPERFAMILY SSF46689 184 232 3.44E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2171 69670006f979267bd64b06c0542e7c6b 238 SUPERFAMILY SSF46689 136 181 8.51E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3721 c9eb2e40060e495348e761b0739d467d 466 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 5 456 4.3E-187 T 13-10-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 BMD_3721 c9eb2e40060e495348e761b0739d467d 466 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_3721 c9eb2e40060e495348e761b0739d467d 466 Pfam PF00367 phosphotransferase system, EIIB 11 43 1.0E-14 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_3721 c9eb2e40060e495348e761b0739d467d 466 Gene3D G3DSA:3.30.1360.60 1 80 2.0E-27 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_3721 c9eb2e40060e495348e761b0739d467d 466 SUPERFAMILY SSF55604 8 81 8.5E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_3721 c9eb2e40060e495348e761b0739d467d 466 Pfam PF02378 Phosphotransferase system, EIIC 111 402 3.4E-37 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_3914 104db82a48fadb3e41e303ccd37359e1 507 Gene3D G3DSA:3.40.190.10 247 505 7.9E-101 T 13-10-2018 BMD_3914 104db82a48fadb3e41e303ccd37359e1 507 Gene3D G3DSA:1.10.3720.10 10 208 3.0E-37 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3914 104db82a48fadb3e41e303ccd37359e1 507 SUPERFAMILY SSF161098 14 198 2.22E-42 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3914 104db82a48fadb3e41e303ccd37359e1 507 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 237 499 1.9E-64 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 BMD_3914 104db82a48fadb3e41e303ccd37359e1 507 Gene3D G3DSA:3.40.190.120 340 443 7.9E-101 T 13-10-2018 BMD_3914 104db82a48fadb3e41e303ccd37359e1 507 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 199 7.3E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_3914 104db82a48fadb3e41e303ccd37359e1 507 SUPERFAMILY SSF53850 237 505 1.81E-72 T 13-10-2018 BMD_2278 8ecc4325a64157a5b0cadbc4103d100b 783 TIGRFAM TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain 177 477 7.3E-92 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 BMD_2278 8ecc4325a64157a5b0cadbc4103d100b 783 Pfam PF05547 Immune inhibitor A peptidase M6 142 779 2.9E-267 T 13-10-2018 IPR008757 Peptidase M6-like, domain GO:0006508|GO:0008233 BMD_2278 8ecc4325a64157a5b0cadbc4103d100b 783 PIRSF PIRSF007519 12 783 1.2E-291 T 13-10-2018 IPR012300 Peptidase M6, InhA BMD_2278 8ecc4325a64157a5b0cadbc4103d100b 783 SUPERFAMILY SSF55486 257 415 4.3E-17 T 13-10-2018 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 SUPERFAMILY SSF46604 86 131 6.28E-10 T 13-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 Gene3D G3DSA:2.60.15.10 1 88 1.7E-33 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 129 8.6E-42 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 129 23.932 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 Gene3D G3DSA:1.20.5.440 89 133 1.3E-16 T 13-10-2018 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 86 130 1.3E-15 T 13-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 82 4.3E-29 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 78 2.0E-34 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5133 77e3f3ddf759c88b8e6c0c1bca546dc7 134 SUPERFAMILY SSF51344 2 84 9.29E-24 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_4050 61b8ad642c52b259c5c80fd094f81b6c 429 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 6 340 8.1E-118 T 13-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase BMD_4050 61b8ad642c52b259c5c80fd094f81b6c 429 SUPERFAMILY SSF51905 6 251 2.04E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4050 61b8ad642c52b259c5c80fd094f81b6c 429 Gene3D G3DSA:3.50.50.60 1 426 1.4E-118 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3667 395e52d252a0c31c14c7fe8f6528ea57 165 PIRSF PIRSF036409 4 149 2.7E-37 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 BMD_3667 395e52d252a0c31c14c7fe8f6528ea57 165 SUPERFAMILY SSF52540 6 138 4.53E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3667 395e52d252a0c31c14c7fe8f6528ea57 165 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 5 144 1.4E-32 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 BMD_3667 395e52d252a0c31c14c7fe8f6528ea57 165 Gene3D G3DSA:3.40.50.300 2 146 5.0E-14 T 13-10-2018 BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 358 429 2.3E-7 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 SUPERFAMILY SSF52540 5 464 4.0E-93 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 Gene3D G3DSA:1.10.8.60 358 463 1.6E-40 T 13-10-2018 BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 2 466 44.358 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 150 3.9E-7 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 SMART SM00382 50 355 7.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 5 466 4.1E-219 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 SMART SM01086 358 452 1.1E-23 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_4185 7d79066c3d18d4253d6fb0b5afd14e4b 466 Pfam PF07724 AAA domain (Cdc48 subfamily) 211 352 2.5E-42 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_0933 e1bdd84f653b05b8eb741a63f3c2476b 244 SUPERFAMILY SSF51658 6 244 8.15E-41 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_0933 e1bdd84f653b05b8eb741a63f3c2476b 244 Pfam PF01261 Xylose isomerase-like TIM barrel 25 203 3.8E-18 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_0933 e1bdd84f653b05b8eb741a63f3c2476b 244 Gene3D G3DSA:3.20.20.150 1 244 1.4E-71 T 13-10-2018 BMD_3501 43386f9af68c9a84b29adc8e68f5cb9d 160 SUPERFAMILY SSF55729 25 132 2.53E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3501 43386f9af68c9a84b29adc8e68f5cb9d 160 Gene3D G3DSA:3.40.630.30 4 136 1.9E-38 T 13-10-2018 BMD_3501 43386f9af68c9a84b29adc8e68f5cb9d 160 Pfam PF13673 Acetyltransferase (GNAT) domain 45 134 2.3E-11 T 13-10-2018 IPR000182 GNAT domain BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 PIRSF PIRSF001529 1 425 2.0E-195 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 4.1E-33 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 SUPERFAMILY SSF46589 1 113 8.89E-32 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 Gene3D G3DSA:3.30.930.10 106 425 4.5E-130 T 13-10-2018 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 Gene3D G3DSA:1.10.287.40 1 105 1.8E-26 T 13-10-2018 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 422 44.267 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 223 400 2.6E-36 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 6.6E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 6.6E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 6.6E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 6.6E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 6.6E-31 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 417 3.7E-184 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BMD_0017 8999d46f16c57dcfab7f36e700c2c227 425 SUPERFAMILY SSF55681 117 418 2.79E-106 T 13-10-2018 BMD_2893 e693fa62fd40008b4fb83ef0169934a0 441 SUPERFAMILY SSF56176 31 209 6.07E-47 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_2893 e693fa62fd40008b4fb83ef0169934a0 441 Gene3D G3DSA:3.30.465.40 6 227 4.8E-52 T 13-10-2018 BMD_2893 e693fa62fd40008b4fb83ef0169934a0 441 Pfam PF01565 FAD binding domain 37 170 2.0E-31 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BMD_2893 e693fa62fd40008b4fb83ef0169934a0 441 SUPERFAMILY SSF55103 215 437 2.83E-13 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 Pfam PF00970 Oxidoreductase FAD-binding domain 155 252 1.6E-10 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 Pfam PF00042 Globin 6 101 1.9E-11 T 13-10-2018 IPR000971 Globin GO:0020037 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 SUPERFAMILY SSF46458 3 142 4.49E-41 T 13-10-2018 IPR009050 Globin-like superfamily BMD_0366 3aaf878c4ca77797d197589b4e849210 393 Pfam PF00175 Oxidoreductase NAD-binding domain 262 364 5.5E-16 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 SUPERFAMILY SSF63380 148 254 3.74E-28 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BMD_0366 3aaf878c4ca77797d197589b4e849210 393 Gene3D G3DSA:2.40.30.10 149 253 5.7E-35 T 13-10-2018 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 Gene3D G3DSA:3.40.50.80 254 388 1.5E-31 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_0366 3aaf878c4ca77797d197589b4e849210 393 Gene3D G3DSA:1.10.490.10 1 144 7.2E-57 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 SUPERFAMILY SSF52343 253 385 3.54E-30 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_0366 3aaf878c4ca77797d197589b4e849210 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 182 194 1.4E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 351 359 1.4E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 PRINTS PR00410 Phenol hydroxylase reductase family signature 261 280 1.4E-10 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 227 236 9.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 261 280 9.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 182 192 9.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_0366 3aaf878c4ca77797d197589b4e849210 393 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 351 359 9.7E-7 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 Pfam PF00849 RNA pseudouridylate synthase 62 195 7.2E-20 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 Pfam PF01479 S4 domain 1 45 1.4E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 SMART SM00363 1 59 3.4E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 SUPERFAMILY SSF55120 61 230 6.3E-42 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 SUPERFAMILY SSF55174 1 90 3.03E-13 T 13-10-2018 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 227 1.2E-46 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 Gene3D G3DSA:3.30.70.1560 129 212 7.9E-57 T 13-10-2018 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 Gene3D G3DSA:3.10.290.10 1 57 2.0E-16 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_4829 bb79223e765f5fdea9be5e9428c9180f 238 Gene3D G3DSA:3.30.70.580 62 230 7.9E-57 T 13-10-2018 BMD_1572 aa3a8cd2031d8f1609d87ae8cf91211c 268 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 265 4.3E-122 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 BMD_1572 aa3a8cd2031d8f1609d87ae8cf91211c 268 Pfam PF03609 PTS system sorbose-specific iic component 4 234 2.2E-70 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 BMD_5265 b29235a1aac3fc8cbfddd49fe574f048 291 Pfam PF02195 ParB-like nuclease domain 40 128 1.3E-26 T 13-10-2018 IPR003115 ParB/Sulfiredoxin BMD_5265 b29235a1aac3fc8cbfddd49fe574f048 291 Gene3D G3DSA:3.90.1530.30 52 115 2.2E-25 T 13-10-2018 BMD_5265 b29235a1aac3fc8cbfddd49fe574f048 291 Gene3D G3DSA:1.10.10.2830 116 229 7.7E-35 T 13-10-2018 BMD_5265 b29235a1aac3fc8cbfddd49fe574f048 291 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 37 215 1.2E-59 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 BMD_5265 b29235a1aac3fc8cbfddd49fe574f048 291 SUPERFAMILY SSF110849 38 182 3.24E-32 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily BMD_5265 b29235a1aac3fc8cbfddd49fe574f048 291 SMART SM00470 39 129 1.4E-34 T 13-10-2018 IPR003115 ParB/Sulfiredoxin BMD_5265 b29235a1aac3fc8cbfddd49fe574f048 291 TIGRFAM TIGR04285 nucleoid_noc: nucleoid occlusion protein 37 290 3.9E-112 T 13-10-2018 IPR023705 Nucleoid occlusion protein BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 260 444 2.1E-56 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 10 491 5.2E-165 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 SUPERFAMILY SSF52540 10 244 3.13E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 Gene3D G3DSA:3.40.50.300 5 247 4.4E-55 T 13-10-2018 BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 SUPERFAMILY SSF52317 197 436 1.09E-33 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 Gene3D G3DSA:3.40.50.880 258 448 7.0E-21 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 242 1.4E-20 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BMD_2964 5c43b74036dd0cb07ec375ee1340e43c 508 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 499 162.978 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 BMD_3190 61868d4097f67e2a22522e77fcfae33d 235 Pfam PF13462 Thioredoxin 57 228 4.6E-36 T 13-10-2018 IPR012336 Thioredoxin-like fold BMD_3190 61868d4097f67e2a22522e77fcfae33d 235 SUPERFAMILY SSF52833 52 228 3.77E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_3190 61868d4097f67e2a22522e77fcfae33d 235 Gene3D G3DSA:3.40.30.10 42 235 1.8E-49 T 13-10-2018 BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 9.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 9.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 9.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 249 8.7E-72 T 13-10-2018 BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 SUPERFAMILY SSF51735 5 253 1.06E-86 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 Gene3D G3DSA:3.40.50.720 1 257 3.8E-85 T 13-10-2018 BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.2E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.2E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.2E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.2E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5005 dc92333ab333f65df9bb5f1e4e306b18 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.2E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 Pfam PF00108 Thiolase, N-terminal domain 6 264 2.0E-112 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 Gene3D G3DSA:3.40.47.10 8 278 1.0E-159 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 ProSitePatterns PS00737 Thiolases signature 2. 341 357 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 393 7.9E-152 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 ProSitePatterns PS00099 Thiolases active site. 376 389 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 PIRSF PIRSF000429 1 395 1.7E-131 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 Gene3D G3DSA:3.40.47.10 128 392 1.0E-159 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 Pfam PF02803 Thiolase, C-terminal domain 273 394 2.0E-47 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 SUPERFAMILY SSF53901 5 272 5.04E-93 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_4393 f08310152b7e865244acff6f2bbd66d2 395 SUPERFAMILY SSF53901 273 394 8.96E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_1316 5509433d2f3516681676d1930acafdf2 298 Gene3D G3DSA:1.10.1040.10 166 297 6.7E-52 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_1316 5509433d2f3516681676d1930acafdf2 298 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 297 2.0E-139 T 13-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 BMD_1316 5509433d2f3516681676d1930acafdf2 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 59 88 1.5E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_1316 5509433d2f3516681676d1930acafdf2 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 22 1.5E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_1316 5509433d2f3516681676d1930acafdf2 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 156 184 1.5E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_1316 5509433d2f3516681676d1930acafdf2 298 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 231 258 1.5E-32 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_1316 5509433d2f3516681676d1930acafdf2 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 152 1.2E-45 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_1316 5509433d2f3516681676d1930acafdf2 298 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 235 247 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_1316 5509433d2f3516681676d1930acafdf2 298 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 167 275 1.6E-25 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_1316 5509433d2f3516681676d1930acafdf2 298 Gene3D G3DSA:3.40.50.720 1 165 2.0E-52 T 13-10-2018 BMD_1316 5509433d2f3516681676d1930acafdf2 298 SUPERFAMILY SSF48179 165 297 3.8E-43 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_1316 5509433d2f3516681676d1930acafdf2 298 SUPERFAMILY SSF51735 1 152 1.71E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1316 5509433d2f3516681676d1930acafdf2 298 SMART SM01350 167 298 7.3E-7 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_2720 046b672fc01559edadf3132ab62e9f18 319 Gene3D G3DSA:3.40.1090.10 2 303 7.0E-27 T 13-10-2018 BMD_2720 046b672fc01559edadf3132ab62e9f18 319 Pfam PF01734 Patatin-like phospholipase 8 171 8.9E-12 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BMD_2720 046b672fc01559edadf3132ab62e9f18 319 SUPERFAMILY SSF52151 4 303 5.75E-24 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BMD_4476 7c4095270ff1a3500ed4e1b46de1f3bd 145 Pfam PF15980 Putative Competence protein ComGF 43 124 1.4E-19 T 13-10-2018 IPR016977 Competence operon G, ComGF BMD_4476 7c4095270ff1a3500ed4e1b46de1f3bd 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 24 4.3E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_4476 7c4095270ff1a3500ed4e1b46de1f3bd 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 25 6.7E-4 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 SUPERFAMILY SSF103473 1 401 2.09E-68 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 PRINTS PR01035 Tetracycline resistance protein signature 18 34 5.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 PRINTS PR01035 Tetracycline resistance protein signature 80 104 5.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 PRINTS PR01035 Tetracycline resistance protein signature 310 330 5.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 PRINTS PR01035 Tetracycline resistance protein signature 139 161 5.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 PRINTS PR01035 Tetracycline resistance protein signature 345 368 5.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 PRINTS PR01035 Tetracycline resistance protein signature 167 187 5.8E-14 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 Pfam PF07690 Major Facilitator Superfamily 17 365 2.8E-57 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 78 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 Gene3D G3DSA:1.20.1250.20 1 399 1.8E-68 T 13-10-2018 BMD_1452 53a5e81224ea6dc86a4280422bb08791 413 ProSitePatterns PS00217 Sugar transport proteins signature 2. 321 346 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 Gene3D G3DSA:3.50.50.60 3 342 1.2E-159 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 331 434 7.0E-19 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 SUPERFAMILY SSF51905 1 318 2.74E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 Gene3D G3DSA:3.50.50.60 116 442 1.2E-159 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 3.1E-19 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 404 3.1E-19 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 238 252 3.1E-19 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 179 3.1E-19 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 3.1E-19 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 299 3.5E-58 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 SUPERFAMILY SSF55424 325 445 1.22E-32 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 3.0E-29 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 3.0E-29 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 3.0E-29 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 3.0E-29 T 13-10-2018 BMD_1241 16a045f474cd8414223a5baf2b68d5b9 446 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 3.0E-29 T 13-10-2018 BMD_0108 da13e072b06e8c2e95b3862b6126bca2 365 Pfam PF01938 TRAM domain 297 349 3.9E-5 T 13-10-2018 IPR002792 TRAM domain BMD_0108 da13e072b06e8c2e95b3862b6126bca2 365 SMART SM00670 165 272 4.1E-12 T 13-10-2018 IPR002716 PIN domain BMD_0108 da13e072b06e8c2e95b3862b6126bca2 365 Gene3D G3DSA:3.40.50.1010 162 295 1.4E-52 T 13-10-2018 BMD_0108 da13e072b06e8c2e95b3862b6126bca2 365 SUPERFAMILY SSF88723 167 293 2.16E-23 T 13-10-2018 IPR029060 PIN-like domain superfamily BMD_5271 b3e2389012662859aa1441ba56951da1 117 SUPERFAMILY SSF54211 1 112 1.01E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_5271 b3e2389012662859aa1441ba56951da1 117 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 1 109 6.8E-31 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BMD_5271 b3e2389012662859aa1441ba56951da1 117 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 7 110 5.0E-33 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BMD_5271 b3e2389012662859aa1441ba56951da1 117 Pfam PF00825 Ribonuclease P 1 107 7.0E-34 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BMD_5271 b3e2389012662859aa1441ba56951da1 117 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 51 65 - T 13-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 BMD_5271 b3e2389012662859aa1441ba56951da1 117 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 111 19.932 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BMD_5271 b3e2389012662859aa1441ba56951da1 117 Gene3D G3DSA:3.30.230.10 1 117 7.3E-38 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 Gene3D G3DSA:3.90.45.10 1 156 1.2E-57 T 13-10-2018 IPR036821 Peptide deformylase superfamily BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 PRINTS PR01576 Peptide deformylase signature 88 99 2.7E-34 T 13-10-2018 IPR023635 Peptide deformylase BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 PRINTS PR01576 Peptide deformylase signature 119 148 2.7E-34 T 13-10-2018 IPR023635 Peptide deformylase BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 PRINTS PR01576 Peptide deformylase signature 33 62 2.7E-34 T 13-10-2018 IPR023635 Peptide deformylase BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 PRINTS PR01576 Peptide deformylase signature 100 118 2.7E-34 T 13-10-2018 IPR023635 Peptide deformylase BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 Pfam PF01327 Polypeptide deformylase 5 148 2.5E-46 T 13-10-2018 IPR023635 Peptide deformylase BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 154 1.4E-50 T 13-10-2018 IPR023635 Peptide deformylase BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 Hamap MF_00163 Peptide deformylase [def]. 2 155 26.724 T 13-10-2018 IPR023635 Peptide deformylase BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 SUPERFAMILY SSF56420 4 149 2.22E-51 T 13-10-2018 IPR036821 Peptide deformylase superfamily BMD_4227 409eadc0e2f878aeeb3f2157e126a19c 157 PIRSF PIRSF004749 1 155 5.6E-46 T 13-10-2018 IPR023635 Peptide deformylase BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 Gene3D G3DSA:3.50.50.100 1 353 5.8E-77 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 223 239 2.2E-8 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 95 113 2.2E-8 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 2.2E-8 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.2E-8 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 250 272 2.2E-8 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 283 6.3E-36 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 224 238 1.5E-7 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 272 1.5E-7 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.5E-7 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 167 1.5E-7 T 13-10-2018 BMD_4957 e3666da422b59ae6ddc54dff5f0af463 354 SUPERFAMILY SSF51905 1 305 2.07E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1852 81bd8c08405b8a6589f140acf2458423 140 SUPERFAMILY SSF54631 2 121 7.33E-33 T 13-10-2018 BMD_1852 81bd8c08405b8a6589f140acf2458423 140 SMART SM00116 76 123 1.6E-7 T 13-10-2018 IPR000644 CBS domain BMD_1852 81bd8c08405b8a6589f140acf2458423 140 SMART SM00116 11 58 6.9E-6 T 13-10-2018 IPR000644 CBS domain BMD_1852 81bd8c08405b8a6589f140acf2458423 140 Gene3D G3DSA:3.10.580.10 1 123 6.0E-39 T 13-10-2018 BMD_1852 81bd8c08405b8a6589f140acf2458423 140 Pfam PF00571 CBS domain 4 54 1.1E-11 T 13-10-2018 IPR000644 CBS domain BMD_1852 81bd8c08405b8a6589f140acf2458423 140 Pfam PF00571 CBS domain 71 120 1.5E-11 T 13-10-2018 IPR000644 CBS domain BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00369 Flavodoxin signature 562 572 5.4E-8 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00369 Flavodoxin signature 484 497 5.4E-8 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00369 Flavodoxin signature 587 606 5.4E-8 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Gene3D G3DSA:1.10.630.10 2 471 4.0E-196 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Gene3D G3DSA:3.40.50.80 889 1049 7.3E-60 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 SUPERFAMILY SSF52343 888 1047 3.8E-47 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Gene3D G3DSA:3.40.50.360 480 631 3.6E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Pfam PF00067 Cytochrome P450 11 448 7.3E-80 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 SUPERFAMILY SSF48264 4 451 3.14E-105 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 SUPERFAMILY SSF52218 479 633 1.06E-40 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Pfam PF00258 Flavodoxin 485 617 1.0E-24 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Gene3D G3DSA:2.40.30.10 670 878 2.9E-77 T 13-10-2018 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 SUPERFAMILY SSF63380 655 884 9.68E-60 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 863 872 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 942 953 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 900 919 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 996 1004 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 929 938 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 828 835 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 973 989 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 695 705 3.0E-32 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 394 403 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 PIRSF PIRSF000209 1 1049 0.0 T 13-10-2018 IPR023206 Bifunctional cytochrome P450/NADPH--cytochrome P450 reductase GO:0003958|GO:0055114|GO:0070330 KEGG: 00071+1.14.14.1|KEGG: 00140+1.14.14.1|KEGG: 00232+1.14.14.1|KEGG: 00380+1.14.14.1|KEGG: 00590+1.14.14.1|KEGG: 00591+1.14.14.1|KEGG: 00627+1.14.14.1|KEGG: 00830+1.14.14.1|KEGG: 00980+1.14.14.1|KEGG: 00982+1.14.14.1|MetaCyc: PWY-5451|MetaCyc: PWY-5665|MetaCyc: PWY-6398|MetaCyc: PWY-6992|MetaCyc: PWY-7466|MetaCyc: PWY-7826 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Pfam PF00175 Oxidoreductase NAD-binding domain 901 1011 1.9E-16 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Pfam PF00667 FAD binding domain 661 868 1.1E-37 T 13-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 BMD_3248 98bcb61b857f4149958f6a3d0a72c0ba 1049 Gene3D G3DSA:1.20.990.10 705 826 2.9E-77 T 13-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 BMD_0022 8907df93aa194647fdb1d5dd3e4902a7 180 SUPERFAMILY SSF52499 4 177 1.28E-40 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_0022 8907df93aa194647fdb1d5dd3e4902a7 180 Pfam PF00857 Isochorismatase family 6 172 1.0E-27 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 BMD_0022 8907df93aa194647fdb1d5dd3e4902a7 180 Gene3D G3DSA:3.40.50.850 1 178 8.3E-40 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_3534 08b82e594fa40ec46e8178a1e81d81da 327 SMART SM00471 46 161 1.8E-5 T 13-10-2018 IPR003607 HD/PDEase domain BMD_3534 08b82e594fa40ec46e8178a1e81d81da 327 SUPERFAMILY SSF109604 4 265 1.15E-45 T 13-10-2018 BMD_3534 08b82e594fa40ec46e8178a1e81d81da 327 Pfam PF01966 HD domain 50 118 2.9E-7 T 13-10-2018 IPR006674 HD domain BMD_3534 08b82e594fa40ec46e8178a1e81d81da 327 Gene3D G3DSA:1.10.3210.10 3 256 3.4E-38 T 13-10-2018 BMD_4854 a8a7e22cdbdf29c84124aa1c37aba82d 156 SUPERFAMILY SSF55811 23 107 1.9E-18 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_4854 a8a7e22cdbdf29c84124aa1c37aba82d 156 ProSitePatterns PS00893 Nudix box signature. 53 74 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BMD_4854 a8a7e22cdbdf29c84124aa1c37aba82d 156 PRINTS PR00502 NUDIX hydrolase family signature 62 77 1.6E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_4854 a8a7e22cdbdf29c84124aa1c37aba82d 156 PRINTS PR00502 NUDIX hydrolase family signature 48 62 1.6E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_4854 a8a7e22cdbdf29c84124aa1c37aba82d 156 Gene3D G3DSA:3.90.79.10 1 155 9.6E-45 T 13-10-2018 BMD_4854 a8a7e22cdbdf29c84124aa1c37aba82d 156 TIGRFAM TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD 3 154 3.5E-64 T 13-10-2018 IPR014078 Nucleoside triphosphatase YtkD MetaCyc: PWY-6502 BMD_4854 a8a7e22cdbdf29c84124aa1c37aba82d 156 Pfam PF00293 NUDIX domain 26 87 6.7E-12 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_2528 5d132e6a1d51147c34e65c9c264e402a 198 Pfam PF00857 Isochorismatase family 10 182 5.0E-35 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 BMD_2528 5d132e6a1d51147c34e65c9c264e402a 198 Gene3D G3DSA:3.40.50.850 2 193 4.1E-59 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_2528 5d132e6a1d51147c34e65c9c264e402a 198 SUPERFAMILY SSF52499 4 189 5.49E-51 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_4381 4c25ad0e7a91148eb402007326c8d537 276 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 23 269 7.9E-113 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 BMD_4381 4c25ad0e7a91148eb402007326c8d537 276 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 23 268 1.5E-119 T 13-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 BMD_4381 4c25ad0e7a91148eb402007326c8d537 276 Pfam PF01048 Phosphorylase superfamily 22 268 8.1E-58 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BMD_4381 4c25ad0e7a91148eb402007326c8d537 276 SUPERFAMILY SSF53167 4 272 2.36E-103 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BMD_4381 4c25ad0e7a91148eb402007326c8d537 276 PIRSF PIRSF000477 1 271 1.3E-121 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 BMD_4381 4c25ad0e7a91148eb402007326c8d537 276 Gene3D G3DSA:3.40.50.1580 1 271 1.1E-119 T 13-10-2018 BMD_4381 4c25ad0e7a91148eb402007326c8d537 276 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 75 116 - T 13-10-2018 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 BMD_1138 0666e98f1cc1e0272b58eabc22fb442e 163 SUPERFAMILY SSF88946 5 71 2.88E-14 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_1138 0666e98f1cc1e0272b58eabc22fb442e 163 SUPERFAMILY SSF88659 106 158 2.01E-11 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_1138 0666e98f1cc1e0272b58eabc22fb442e 163 Pfam PF08281 Sigma-70, region 4 105 156 1.5E-8 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_1138 0666e98f1cc1e0272b58eabc22fb442e 163 Pfam PF04542 Sigma-70 region 2 11 72 1.1E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_1138 0666e98f1cc1e0272b58eabc22fb442e 163 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 158 1.3E-22 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_1138 0666e98f1cc1e0272b58eabc22fb442e 163 Gene3D G3DSA:1.10.10.10 28 163 1.8E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2220 f62431454f8ad013c959707275a350c0 391 Pfam PF01411 tRNA synthetases class II (A) 26 88 6.1E-7 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 BMD_2220 f62431454f8ad013c959707275a350c0 391 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 181 221 1.7E-9 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BMD_2220 f62431454f8ad013c959707275a350c0 391 Gene3D G3DSA:3.10.310.40 288 390 1.6E-7 T 13-10-2018 BMD_2220 f62431454f8ad013c959707275a350c0 391 SUPERFAMILY SSF55186 88 230 4.32E-35 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BMD_2220 f62431454f8ad013c959707275a350c0 391 Pfam PF02272 DHHA1 domain 260 387 3.7E-10 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BMD_2220 f62431454f8ad013c959707275a350c0 391 SUPERFAMILY SSF50447 1 81 1.45E-16 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_2220 f62431454f8ad013c959707275a350c0 391 Gene3D G3DSA:2.40.30.130 1 84 1.2E-26 T 13-10-2018 BMD_2220 f62431454f8ad013c959707275a350c0 391 SMART SM00863 181 223 5.7E-12 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BMD_2220 f62431454f8ad013c959707275a350c0 391 Gene3D G3DSA:3.30.980.10 85 240 2.8E-46 T 13-10-2018 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SUPERFAMILY SSF158472 214 262 4.58E-6 T 13-10-2018 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SUPERFAMILY SSF55781 308 465 3.19E-12 T 13-10-2018 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SUPERFAMILY SSF52172 822 942 8.4E-26 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Gene3D G3DSA:1.10.287.130 574 653 3.6E-27 T 13-10-2018 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 695 805 1.4E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 732 746 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 750 760 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 791 804 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 PRINTS PR00344 Bacterial sensor protein C-terminal signature 767 785 1.0E-17 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SUPERFAMILY SSF55785 453 577 2.72E-6 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Pfam PF00072 Response regulator receiver domain 825 935 1.8E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Pfam PF00672 HAMP domain 215 261 6.6E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SMART SM00388 585 651 3.4E-24 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SUPERFAMILY SSF55874 640 806 1.44E-46 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Gene3D G3DSA:1.20.1480.50 174 270 1.7E-12 T 13-10-2018 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Gene3D G3DSA:3.40.50.12740 823 956 7.7E-27 T 13-10-2018 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Pfam PF00989 PAS fold 464 576 1.9E-5 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Gene3D G3DSA:3.30.450.40 310 456 5.5E-13 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Pfam PF00512 His Kinase A (phospho-acceptor) domain 585 651 1.1E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Gene3D G3DSA:3.30.565.10 654 813 1.0E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SUPERFAMILY SSF47384 571 652 5.1E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Pfam PF01590 GAF domain 319 446 6.7E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SMART SM00448 823 935 1.1E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 Gene3D G3DSA:3.30.450.20 457 573 2.4E-9 T 13-10-2018 BMD_0941 403edd37c7ac117b43b79f6d8059dbfa 957 SMART SM00387 695 807 1.1E-40 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0506 f50eae6ff6af37b483ca3d861ad46d08 191 Gene3D G3DSA:1.10.357.10 2 191 5.1E-50 T 13-10-2018 BMD_0506 f50eae6ff6af37b483ca3d861ad46d08 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0506 f50eae6ff6af37b483ca3d861ad46d08 191 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.4E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0506 f50eae6ff6af37b483ca3d861ad46d08 191 SUPERFAMILY SSF46689 6 72 4.21E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0506 f50eae6ff6af37b483ca3d861ad46d08 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 57 2.1E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0506 f50eae6ff6af37b483ca3d861ad46d08 191 SUPERFAMILY SSF48498 78 186 5.78E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_1356 d496e3438f9c836a4dc312381b410017 110 TIGRFAM TIGR02908 CoxD_Bacillus: cytochrome c oxidase, subunit IVB 3 110 6.6E-48 T 13-10-2018 IPR014257 Cytochrome c oxidase, subunit IV bacillaceae KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 BMD_1356 d496e3438f9c836a4dc312381b410017 110 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 30 101 4.5E-15 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 BMD_1473 f4c258b9a381c7021aa32c89eb990ad4 380 SUPERFAMILY SSF55874 253 369 6.94E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1473 f4c258b9a381c7021aa32c89eb990ad4 380 Gene3D G3DSA:3.30.565.10 246 371 6.6E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1473 f4c258b9a381c7021aa32c89eb990ad4 380 Pfam PF07730 Histidine kinase 182 245 2.1E-22 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BMD_1473 f4c258b9a381c7021aa32c89eb990ad4 380 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 285 369 1.2E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0683 dec2bfd942046a9f206db06022154914 1036 Gene3D G3DSA:1.10.1030.10 403 549 1.5E-42 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 SUPERFAMILY SSF52440 554 671 2.73E-43 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_0683 dec2bfd942046a9f206db06022154914 1036 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 1.9E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.9E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 378 396 1.9E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 1.9E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 296 325 1.9E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.9E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 1.9E-62 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 423 543 1.0E-37 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Gene3D G3DSA:3.40.50.20 1 116 1.3E-47 T 13-10-2018 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Gene3D G3DSA:3.30.470.20 663 924 4.7E-82 T 13-10-2018 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 129 333 5.3E-80 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 669 868 8.7E-32 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0683 dec2bfd942046a9f206db06022154914 1036 SUPERFAMILY SSF56059 669 926 1.77E-76 T 13-10-2018 BMD_0683 dec2bfd942046a9f206db06022154914 1036 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 831 838 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Gene3D G3DSA:3.30.1490.20 682 749 4.7E-82 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_0683 dec2bfd942046a9f206db06022154914 1036 SUPERFAMILY SSF56059 129 399 3.54E-107 T 13-10-2018 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Gene3D G3DSA:3.40.50.20 550 658 2.3E-42 T 13-10-2018 BMD_0683 dec2bfd942046a9f206db06022154914 1036 SUPERFAMILY SSF52440 1 127 1.02E-49 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_0683 dec2bfd942046a9f206db06022154914 1036 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0683 dec2bfd942046a9f206db06022154914 1036 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0683 dec2bfd942046a9f206db06022154914 1036 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 705 719 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BMD_0683 dec2bfd942046a9f206db06022154914 1036 SMART SM01096 420 543 6.4E-60 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1021 12.262 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 973 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_0683 dec2bfd942046a9f206db06022154914 1036 Gene3D G3DSA:3.30.470.20 120 401 2.8E-121 T 13-10-2018 BMD_0683 dec2bfd942046a9f206db06022154914 1036 SUPERFAMILY SSF48108 394 549 4.45E-46 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 SUPERFAMILY SSF51735 3 246 1.2E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.8E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 Gene3D G3DSA:3.40.50.720 2 248 2.0E-76 T 13-10-2018 BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 245 6.8E-59 T 13-10-2018 BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 1.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3119 efdc5b89a045fa2396da898c2c40f2ad 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.9E-30 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5193 99824a6c93a178ba6b2fa4e3e1770f61 105 Pfam PF17261 Family of unknown function (DUF5327) 1 105 9.5E-24 T 13-10-2018 IPR035218 Protein of unknown function DUF5327 BMD_5193 99824a6c93a178ba6b2fa4e3e1770f61 105 ProDom PD705231 YWDI GROUP-SPECIFIC 1 105 9.0E-5 T 13-10-2018 IPR035218 Protein of unknown function DUF5327 BMD_0228 1e6a9d4e63b1b0f4af899ff9ac73265d 161 Pfam PF13581 Histidine kinase-like ATPase domain 12 141 4.5E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0228 1e6a9d4e63b1b0f4af899ff9ac73265d 161 Gene3D G3DSA:3.30.565.10 4 156 1.8E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0228 1e6a9d4e63b1b0f4af899ff9ac73265d 161 Hamap MF_00638 Serine-protein kinase RsbW [rsbW]. 2 157 40.936 T 13-10-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BMD_0228 1e6a9d4e63b1b0f4af899ff9ac73265d 161 TIGRFAM TIGR01924 rsbW_low_gc: anti-sigma B factor 1 158 2.0E-73 T 13-10-2018 IPR010193 Serine-protein kinase RsbW GO:0004674|GO:0005524|GO:0006468|GO:0016989|GO:0045892 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BMD_0228 1e6a9d4e63b1b0f4af899ff9ac73265d 161 SUPERFAMILY SSF55874 35 136 2.23E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1529 371296cba014efbc032c578c3259932c 380 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 190 377 2.9E-35 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_1529 371296cba014efbc032c578c3259932c 380 SUPERFAMILY SSF81606 179 376 1.83E-8 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_1529 371296cba014efbc032c578c3259932c 380 Gene3D G3DSA:3.60.40.10 166 380 4.6E-44 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_1529 371296cba014efbc032c578c3259932c 380 SUPERFAMILY SSF52172 1 133 8.25E-35 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1529 371296cba014efbc032c578c3259932c 380 Gene3D G3DSA:3.40.50.12740 1 165 1.9E-40 T 13-10-2018 BMD_1529 371296cba014efbc032c578c3259932c 380 Pfam PF00072 Response regulator receiver domain 3 122 5.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1529 371296cba014efbc032c578c3259932c 380 SMART SM00331 163 377 9.9E-24 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_1529 371296cba014efbc032c578c3259932c 380 SMART SM00448 1 122 3.6E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 Gene3D G3DSA:3.30.70.1400 54 139 5.4E-92 T 13-10-2018 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 261 4.7E-95 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 Hamap MF_00259 Aminomethyltransferase [gcvT]. 4 364 48.579 T 13-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 SUPERFAMILY SSF103025 4 282 2.51E-99 T 13-10-2018 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 SUPERFAMILY SSF101790 275 364 2.94E-27 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 PIRSF PIRSF006487 1 366 6.6E-105 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 Gene3D G3DSA:3.30.1360.120 7 238 5.4E-92 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 Gene3D G3DSA:2.40.30.110 282 364 1.3E-33 T 13-10-2018 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 268 358 8.1E-28 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 5 364 3.1E-151 T 13-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 BMD_4471 a9f8a9bf01e42e731ce298a33163455e 366 Gene3D G3DSA:4.10.1250.10 240 280 2.2E-15 T 13-10-2018 BMD_1765 0328e779bcd9ef85e3cff7bba1462e31 81 SUPERFAMILY SSF48317 9 72 1.7E-11 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BMD_1765 0328e779bcd9ef85e3cff7bba1462e31 81 Gene3D G3DSA:1.20.144.10 1 77 3.4E-11 T 13-10-2018 BMD_1765 0328e779bcd9ef85e3cff7bba1462e31 81 Pfam PF01569 PAP2 superfamily 2 70 1.1E-8 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 SUPERFAMILY SSF48008 79 208 2.62E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 2.2E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 Gene3D G3DSA:1.20.120.530 73 217 1.4E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 SMART SM00345 16 74 1.1E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 SMART SM00895 84 208 7.0E-14 T 13-10-2018 IPR011711 GntR, C-terminal BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 Gene3D G3DSA:1.10.10.10 12 72 4.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 SUPERFAMILY SSF46785 5 78 9.72E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1914 5a1a38b56344246f89c5297b2e60374e 222 Pfam PF07729 FCD domain 84 207 1.3E-19 T 13-10-2018 IPR011711 GntR, C-terminal BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 TIGRFAM TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase 5 515 1.2E-258 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 Hamap MF_00733 1-pyrroline-5-carboxylate dehydrogenase [rocA]. 1 515 67.389 T 13-10-2018 IPR005932 Putative 1-pyrroline-5-carboxylate dehydrogenase, Bacillales KEGG: 00250+1.2.1.88|KEGG: 00330+1.2.1.88|MetaCyc: PWY-6853 BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 285 292 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 Gene3D G3DSA:3.40.605.10 9 509 4.0E-188 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 Pfam PF00171 Aldehyde dehydrogenase family 49 510 3.8E-156 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 313 324 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 SUPERFAMILY SSF53720 4 511 1.83E-155 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_0662 78bf0aecda65d9445e681237cab66fbd 515 Gene3D G3DSA:3.40.309.10 290 480 4.0E-188 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_3598 6b49d7c49211223e62e828729544cc95 290 Gene3D G3DSA:3.40.190.290 90 280 7.9E-20 T 13-10-2018 BMD_3598 6b49d7c49211223e62e828729544cc95 290 Pfam PF03466 LysR substrate binding domain 87 276 7.1E-20 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3598 6b49d7c49211223e62e828729544cc95 290 Gene3D G3DSA:1.10.10.10 1 89 4.1E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3598 6b49d7c49211223e62e828729544cc95 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.0E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3598 6b49d7c49211223e62e828729544cc95 290 SUPERFAMILY SSF53850 87 277 1.16E-20 T 13-10-2018 BMD_3598 6b49d7c49211223e62e828729544cc95 290 SUPERFAMILY SSF46785 1 86 2.99E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4392 5217311f908b9fdb2f7a7fbe46184954 229 SMART SM00882 5 216 1.1E-90 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4392 5217311f908b9fdb2f7a7fbe46184954 229 Gene3D G3DSA:3.40.1080.10 1 225 2.2E-98 T 13-10-2018 BMD_4392 5217311f908b9fdb2f7a7fbe46184954 229 SUPERFAMILY SSF100950 2 223 6.77E-90 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_4392 5217311f908b9fdb2f7a7fbe46184954 229 Pfam PF01144 Coenzyme A transferase 7 213 5.8E-78 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4392 5217311f908b9fdb2f7a7fbe46184954 229 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 3 214 6.2E-81 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 BMD_4392 5217311f908b9fdb2f7a7fbe46184954 229 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 17 32 - T 13-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 BMD_5179 90956ada8e0ae87bb4a31d99720ce163 688 SUPERFAMILY SSF53955 50 258 6.75E-78 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily BMD_5179 90956ada8e0ae87bb4a31d99720ce163 688 Pfam PF00905 Penicillin binding protein transpeptidase domain 329 573 1.4E-29 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_5179 90956ada8e0ae87bb4a31d99720ce163 688 Pfam PF00912 Transglycosylase 62 237 3.0E-66 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_5179 90956ada8e0ae87bb4a31d99720ce163 688 Gene3D G3DSA:1.10.3810.10 55 253 5.7E-78 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_5179 90956ada8e0ae87bb4a31d99720ce163 688 Gene3D G3DSA:3.40.710.10 260 668 5.5E-113 T 13-10-2018 BMD_5179 90956ada8e0ae87bb4a31d99720ce163 688 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 73 610 3.0E-179 T 13-10-2018 BMD_5179 90956ada8e0ae87bb4a31d99720ce163 688 SUPERFAMILY SSF56601 219 663 3.11E-115 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_0905 307501042debf21c8e4a4082173a0ab8 594 SUPERFAMILY SSF52540 345 592 6.63E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0905 307501042debf21c8e4a4082173a0ab8 594 SMART SM00382 381 567 2.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0905 307501042debf21c8e4a4082173a0ab8 594 Gene3D G3DSA:3.40.50.300 352 593 4.0E-90 T 13-10-2018 BMD_0905 307501042debf21c8e4a4082173a0ab8 594 Gene3D G3DSA:1.20.1560.10 9 342 1.4E-103 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_0905 307501042debf21c8e4a4082173a0ab8 594 SUPERFAMILY SSF90123 20 339 7.46E-85 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_0905 307501042debf21c8e4a4082173a0ab8 594 Pfam PF00005 ABC transporter 372 521 6.3E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0905 307501042debf21c8e4a4082173a0ab8 594 Pfam PF00664 ABC transporter transmembrane region 41 309 4.0E-54 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_4965 d740550013c98806ee2fbe1843a9b61f 166 PIRSF PIRSF019587 5 166 3.0E-78 T 13-10-2018 IPR026038 Putative phosphatidylglycerophosphatase BMD_4965 d740550013c98806ee2fbe1843a9b61f 166 Gene3D G3DSA:1.10.3760.10 2 166 1.2E-73 T 13-10-2018 BMD_4965 d740550013c98806ee2fbe1843a9b61f 166 SUPERFAMILY SSF101307 10 164 6.15E-54 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 BMD_4965 d740550013c98806ee2fbe1843a9b61f 166 Pfam PF04608 Phosphatidylglycerophosphatase A 24 159 1.2E-19 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 Pfam PF11858 Domain of unknown function (DUF3378) 3 74 8.2E-26 T 13-10-2018 IPR024568 Ribonuclease HIII, N-terminal BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 TIGRFAM TIGR00716 rnhC: ribonuclease HIII 5 294 1.0E-93 T 13-10-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 SUPERFAMILY SSF53098 88 301 1.06E-51 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 Gene3D G3DSA:3.30.420.10 88 304 4.2E-80 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 Pfam PF01351 Ribonuclease HII 90 295 4.9E-50 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 Gene3D G3DSA:3.30.310.10 1 87 5.7E-28 T 13-10-2018 IPR012295 TBP domain superfamily BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 Hamap MF_00053 Ribonuclease HIII [rnhC]. 1 302 34.424 T 13-10-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 BMD_4727 14e9a1235542e8093759bd55f6d3a6ee 304 PIRSF PIRSF037748 1 303 4.0E-119 T 13-10-2018 IPR004641 Ribonuclease HIII GO:0004523|GO:0005737|GO:0016070 BMD_4799 14a227e2a77eb7a051b1cb4c11d61475 210 PIRSF PIRSF021278 2 210 4.1E-90 T 13-10-2018 IPR024699 Acetoin utilization protein AcuA GO:0019152|GO:0045150 BMD_4799 14a227e2a77eb7a051b1cb4c11d61475 210 Gene3D G3DSA:3.40.630.30 1 210 5.6E-89 T 13-10-2018 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 PIRSF PIRSF001369 1 372 9.7E-158 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 PRINTS PR00143 Citrate synthase signature 123 136 1.1E-42 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 PRINTS PR00143 Citrate synthase signature 304 320 1.1E-42 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 PRINTS PR00143 Citrate synthase signature 324 338 1.1E-42 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 PRINTS PR00143 Citrate synthase signature 172 187 1.1E-42 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 PRINTS PR00143 Citrate synthase signature 247 267 1.1E-42 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 PRINTS PR00143 Citrate synthase signature 194 222 1.1E-42 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 Gene3D G3DSA:1.10.230.10 220 318 2.9E-131 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 Pfam PF00285 Citrate synthase, C-terminal domain 6 354 3.1E-133 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 ProSitePatterns PS00480 Citrate synthase signature. 254 266 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 5 371 1.8E-165 T 13-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 SUPERFAMILY SSF48256 2 371 1.05E-138 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 BMD_4756 52d54c312ce360c2e2010e15bd18c6c7 372 Gene3D G3DSA:1.10.580.10 25 351 2.9E-131 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BMD_3621 124bfc9b0a55d44ff7ca77007e90a174 392 Gene3D G3DSA:3.40.50.720 7 360 2.5E-103 T 13-10-2018 BMD_3621 124bfc9b0a55d44ff7ca77007e90a174 392 SUPERFAMILY SSF51735 3 155 3.41E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3621 124bfc9b0a55d44ff7ca77007e90a174 392 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 204 7.0E-9 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BMD_3621 124bfc9b0a55d44ff7ca77007e90a174 392 SUPERFAMILY SSF55347 129 330 4.25E-35 T 13-10-2018 BMD_3621 124bfc9b0a55d44ff7ca77007e90a174 392 Gene3D G3DSA:3.30.360.10 131 381 2.5E-103 T 13-10-2018 BMD_3621 124bfc9b0a55d44ff7ca77007e90a174 392 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 123 5.4E-27 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_0820 fe44ad8fbed8d3019d586dc1492a739c 229 SMART SM00382 30 219 1.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0820 fe44ad8fbed8d3019d586dc1492a739c 229 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0820 fe44ad8fbed8d3019d586dc1492a739c 229 Pfam PF00005 ABC transporter 21 169 3.5E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0820 fe44ad8fbed8d3019d586dc1492a739c 229 Gene3D G3DSA:3.40.50.300 1 227 6.1E-70 T 13-10-2018 BMD_0820 fe44ad8fbed8d3019d586dc1492a739c 229 SUPERFAMILY SSF52540 1 224 1.64E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 296 3.6E-137 T 13-10-2018 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 154 1.0E-46 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 Gene3D G3DSA:3.40.50.720 1 166 9.1E-52 T 13-10-2018 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 Gene3D G3DSA:1.10.1040.10 167 297 1.2E-50 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 SUPERFAMILY SSF48179 166 295 2.38E-40 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 SUPERFAMILY SSF51735 1 154 3.95E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 SMART SM01350 168 299 2.1E-6 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 22 9.2E-31 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 157 185 9.2E-31 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 232 259 9.2E-31 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 60 89 9.2E-31 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_0753 1e4aa49b1c355655cbc956a9f2ea91a2 299 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 168 277 4.1E-24 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 SUPERFAMILY SSF46785 8 137 1.79E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 Pfam PF01047 MarR family 36 92 9.2E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 Gene3D G3DSA:1.10.10.10 3 138 9.1E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3544 e10bf9dde5502d2979aa30bf9a247793 139 SMART SM00347 27 127 2.3E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3687 c7e24e521231a082448698a0c260b457 561 Gene3D G3DSA:1.20.1250.20 4 250 6.4E-24 T 13-10-2018 BMD_3687 c7e24e521231a082448698a0c260b457 561 SUPERFAMILY SSF103473 202 485 7.59E-10 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3687 c7e24e521231a082448698a0c260b457 561 Pfam PF07690 Major Facilitator Superfamily 26 379 6.3E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3687 c7e24e521231a082448698a0c260b457 561 SUPERFAMILY SSF103473 6 217 1.57E-22 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 SUPERFAMILY SSF53448 1 233 1.23E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 Gene3D G3DSA:3.90.1150.10 253 606 3.6E-98 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 Pfam PF00266 Aminotransferase class-V 267 545 7.4E-27 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 252 606 5.2E-116 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 Pfam PF12804 MobA-like NTP transferase domain 5 153 2.9E-10 T 13-10-2018 IPR025877 MobA-like NTP transferase BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 Gene3D G3DSA:3.40.640.10 262 508 3.6E-98 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 SUPERFAMILY SSF53383 250 609 2.91E-75 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 252 613 113.438 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 BMD_0787 9abe9604614a7c2065df1be5ab1d537b 613 Gene3D G3DSA:3.90.550.10 3 235 4.2E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1676 933f083416eb15c927c8592d842bd0b8 213 SMART SM00287 113 174 0.073 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_1676 933f083416eb15c927c8592d842bd0b8 213 SMART SM00287 32 96 1.0 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_1676 933f083416eb15c927c8592d842bd0b8 213 Gene3D G3DSA:2.30.30.40 31 104 3.6E-5 T 13-10-2018 BMD_1676 933f083416eb15c927c8592d842bd0b8 213 Gene3D G3DSA:2.30.30.40 105 174 4.3E-8 T 13-10-2018 BMD_3577 05f0a0b55619dd8422f4a396e9c3f713 347 Pfam PF04909 Amidohydrolase 5 329 1.5E-54 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_3577 05f0a0b55619dd8422f4a396e9c3f713 347 SUPERFAMILY SSF51556 3 330 3.31E-91 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_3577 05f0a0b55619dd8422f4a396e9c3f713 347 Gene3D G3DSA:3.20.20.140 3 334 3.5E-106 T 13-10-2018 BMD_3054 1e3894cea5339893934e503753e400ca 355 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 6 143 1.1E-41 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_3054 1e3894cea5339893934e503753e400ca 355 Gene3D G3DSA:3.40.50.2000 1 178 3.8E-60 T 13-10-2018 BMD_3054 1e3894cea5339893934e503753e400ca 355 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 6 355 29.696 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_3054 1e3894cea5339893934e503753e400ca 355 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 190 342 4.8E-30 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 BMD_3054 1e3894cea5339893934e503753e400ca 355 Gene3D G3DSA:3.40.50.2000 179 341 6.3E-39 T 13-10-2018 BMD_3054 1e3894cea5339893934e503753e400ca 355 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 349 8.4E-82 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_3054 1e3894cea5339893934e503753e400ca 355 SUPERFAMILY SSF53756 6 354 6.81E-94 T 13-10-2018 BMD_0587 16dee5508963e1bc974cf2563c224cf6 155 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 153 8.0E-41 T 13-10-2018 BMD_0587 16dee5508963e1bc974cf2563c224cf6 155 Pfam PF17099 Tryptophan transporter TrpP 1 145 1.2E-44 T 13-10-2018 IPR031360 Tryptophan transporter TrpP BMD_2796 4f3680d9991101b33f3440d3c936e00d 94 Gene3D G3DSA:3.10.180.10 1 94 1.5E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2796 4f3680d9991101b33f3440d3c936e00d 94 Pfam PF12681 Glyoxalase-like domain 3 91 2.7E-14 T 13-10-2018 IPR025870 Glyoxalase-like domain BMD_2796 4f3680d9991101b33f3440d3c936e00d 94 SUPERFAMILY SSF54593 3 92 8.73E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 SMART SM00363 5 70 3.0E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 6 238 2.4E-93 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 Pfam PF01728 FtsJ-like methyltransferase 61 243 2.0E-18 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 Gene3D G3DSA:3.10.290.10 1 63 2.8E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 SUPERFAMILY SSF53335 60 244 2.82E-18 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 Gene3D G3DSA:3.40.50.150 64 275 5.1E-83 T 13-10-2018 BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 Pfam PF01479 S4 domain 5 47 1.9E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 SUPERFAMILY SSF55174 4 70 1.28E-11 T 13-10-2018 BMD_4440 3c80659ba6d147a540168d879eeb03a9 275 PIRSF PIRSF005578 1 268 5.7E-102 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 BMD_0789 035334599b7e02c44e73ea30ae7174b5 237 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 9 237 1.1E-87 T 13-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 BMD_0789 035334599b7e02c44e73ea30ae7174b5 237 Pfam PF03306 Alpha-acetolactate decarboxylase 9 225 1.5E-82 T 13-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 BMD_0789 035334599b7e02c44e73ea30ae7174b5 237 PIRSF PIRSF001332 1 237 2.5E-91 T 13-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 BMD_0789 035334599b7e02c44e73ea30ae7174b5 237 Gene3D G3DSA:3.30.1330.80 83 205 3.8E-82 T 13-10-2018 BMD_0789 035334599b7e02c44e73ea30ae7174b5 237 Gene3D G3DSA:3.30.1330.80 9 224 3.8E-82 T 13-10-2018 BMD_0789 035334599b7e02c44e73ea30ae7174b5 237 SUPERFAMILY SSF117856 8 237 2.51E-78 T 13-10-2018 BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 Pfam PF00107 Zinc-binding dehydrogenase 151 258 2.5E-27 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 Gene3D G3DSA:3.40.50.720 123 264 9.4E-95 T 13-10-2018 BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 SUPERFAMILY SSF51735 111 273 3.27E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 140 161 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 3.2E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 Gene3D G3DSA:3.90.180.10 9 317 9.4E-95 T 13-10-2018 BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 SMART SM00829 10 318 2.7E-24 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_2705 e7c6f55e2bce1763b4ee3dfc72db7fdd 320 SUPERFAMILY SSF50129 1 144 7.0E-36 T 13-10-2018 IPR011032 GroES-like superfamily BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 323 4.1E-126 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 Gene3D G3DSA:3.40.50.620 1 332 1.5E-144 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 4 481 5.3E-195 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 4 484 34.511 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 SUPERFAMILY SSF52374 5 316 1.77E-116 T 13-10-2018 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 SUPERFAMILY SSF48163 298 482 4.97E-49 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 Gene3D G3DSA:1.10.10.350 390 485 1.7E-33 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 6.1E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 204 6.1E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 6.1E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 6.1E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BMD_0111 a917a400daf85d12b877fa4224f8ed71 485 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 218 6.1E-29 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BMD_4041 5af47e46ebfc53e4770536efd639a10b 280 Gene3D G3DSA:3.40.50.10170 1 152 9.1E-53 T 13-10-2018 BMD_4041 5af47e46ebfc53e4770536efd639a10b 280 Gene3D G3DSA:3.30.1180.10 153 279 9.6E-36 T 13-10-2018 BMD_4041 5af47e46ebfc53e4770536efd639a10b 280 SUPERFAMILY SSF82549 1 279 3.66E-89 T 13-10-2018 BMD_4041 5af47e46ebfc53e4770536efd639a10b 280 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 4 277 8.9E-98 T 13-10-2018 IPR003797 DegV BMD_4041 5af47e46ebfc53e4770536efd639a10b 280 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 279 1.1E-91 T 13-10-2018 IPR003797 DegV BMD_3582 5bb8a23db2d2f0e144e7fc3d954b3890 209 Gene3D G3DSA:2.60.120.1460 6 207 7.8E-44 T 13-10-2018 BMD_3582 5bb8a23db2d2f0e144e7fc3d954b3890 209 SUPERFAMILY SSF46785 138 207 2.72E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3582 5bb8a23db2d2f0e144e7fc3d954b3890 209 SMART SM00100 4 123 1.9E-8 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain BMD_3582 5bb8a23db2d2f0e144e7fc3d954b3890 209 SUPERFAMILY SSF51206 12 131 6.02E-23 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like BMD_3582 5bb8a23db2d2f0e144e7fc3d954b3890 209 Pfam PF13545 Crp-like helix-turn-helix domain 139 206 5.6E-14 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BMD_3582 5bb8a23db2d2f0e144e7fc3d954b3890 209 Pfam PF00027 Cyclic nucleotide-binding domain 22 106 4.9E-15 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain BMD_2215 fec5cd8dea48ab018f26d77dcbea8e68 482 Gene3D G3DSA:3.40.309.10 249 439 3.9E-173 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_2215 fec5cd8dea48ab018f26d77dcbea8e68 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 272 283 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_2215 fec5cd8dea48ab018f26d77dcbea8e68 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 244 251 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_2215 fec5cd8dea48ab018f26d77dcbea8e68 482 SUPERFAMILY SSF53720 19 472 8.9E-156 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_2215 fec5cd8dea48ab018f26d77dcbea8e68 482 Pfam PF00171 Aldehyde dehydrogenase family 18 469 1.9E-168 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_2215 fec5cd8dea48ab018f26d77dcbea8e68 482 Gene3D G3DSA:3.40.605.10 18 464 3.9E-173 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_1159 4fa4eee72907e559abd083fae6292a0b 245 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 241 1.6E-92 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 BMD_1159 4fa4eee72907e559abd083fae6292a0b 245 SUPERFAMILY SSF100950 1 242 8.9E-95 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_1159 4fa4eee72907e559abd083fae6292a0b 245 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 241 42.788 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 BMD_1159 4fa4eee72907e559abd083fae6292a0b 245 Gene3D G3DSA:3.40.50.1360 1 240 1.1E-100 T 13-10-2018 BMD_1159 4fa4eee72907e559abd083fae6292a0b 245 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 120 138 - T 13-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 BMD_1159 4fa4eee72907e559abd083fae6292a0b 245 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 12 226 5.2E-23 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 BMD_4228 08cb4428954bed9f1745580795edabfd 804 SUPERFAMILY SSF52540 533 707 2.4E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4228 08cb4428954bed9f1745580795edabfd 804 SMART SM00490 565 662 2.1E-10 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4228 08cb4428954bed9f1745580795edabfd 804 Gene3D G3DSA:1.10.8.630 2 113 3.7E-25 T 13-10-2018 BMD_4228 08cb4428954bed9f1745580795edabfd 804 Pfam PF00270 DEAD/DEAH box helicase 268 432 5.0E-19 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_4228 08cb4428954bed9f1745580795edabfd 804 TIGRFAM TIGR00595 priA: primosomal protein N' 291 801 2.2E-221 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BMD_4228 08cb4428954bed9f1745580795edabfd 804 Hamap MF_00983 Probable primosomal protein N' [priA]. 9 803 25.485 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BMD_4228 08cb4428954bed9f1745580795edabfd 804 SUPERFAMILY SSF52540 261 445 4.85E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4228 08cb4428954bed9f1745580795edabfd 804 Gene3D G3DSA:3.40.50.300 253 448 9.3E-78 T 13-10-2018 BMD_4228 08cb4428954bed9f1745580795edabfd 804 Pfam PF00271 Helicase conserved C-terminal domain 573 661 4.2E-8 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4228 08cb4428954bed9f1745580795edabfd 804 SMART SM00487 263 462 1.2E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_0952 200f1424557927689936040010224e40 185 SUPERFAMILY SSF52540 11 174 2.45E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0952 200f1424557927689936040010224e40 185 Hamap MF_00109 Shikimate kinase [aroK]. 10 175 23.717 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BMD_0952 200f1424557927689936040010224e40 185 PRINTS PR01100 Shikimate kinase family signature 13 28 8.2E-16 T 13-10-2018 BMD_0952 200f1424557927689936040010224e40 185 PRINTS PR01100 Shikimate kinase family signature 83 92 8.2E-16 T 13-10-2018 BMD_0952 200f1424557927689936040010224e40 185 PRINTS PR01100 Shikimate kinase family signature 65 73 8.2E-16 T 13-10-2018 BMD_0952 200f1424557927689936040010224e40 185 PRINTS PR01100 Shikimate kinase family signature 104 121 8.2E-16 T 13-10-2018 BMD_0952 200f1424557927689936040010224e40 185 PRINTS PR01100 Shikimate kinase family signature 37 50 8.2E-16 T 13-10-2018 BMD_0952 200f1424557927689936040010224e40 185 ProSitePatterns PS01128 Shikimate kinase signature. 66 91 - T 13-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BMD_0952 200f1424557927689936040010224e40 185 Gene3D G3DSA:3.40.50.300 7 181 2.9E-43 T 13-10-2018 BMD_0952 200f1424557927689936040010224e40 185 Pfam PF01202 Shikimate kinase 19 174 3.0E-43 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BMD_0448 31ac3f8df08a6525b71406dbf43257b7 317 SUPERFAMILY SSF160240 236 314 6.93E-16 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BMD_0448 31ac3f8df08a6525b71406dbf43257b7 317 Pfam PF16916 Dimerisation domain of Zinc Transporter 237 314 9.3E-17 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain BMD_0448 31ac3f8df08a6525b71406dbf43257b7 317 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 30 314 2.3E-73 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_0448 31ac3f8df08a6525b71406dbf43257b7 317 SUPERFAMILY SSF161111 27 233 1.96E-50 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_0448 31ac3f8df08a6525b71406dbf43257b7 317 Pfam PF01545 Cation efflux family 34 232 1.7E-44 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_0448 31ac3f8df08a6525b71406dbf43257b7 317 Gene3D G3DSA:1.20.1510.10 28 232 6.2E-53 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_0448 31ac3f8df08a6525b71406dbf43257b7 317 Gene3D G3DSA:3.30.70.1350 234 315 3.4E-15 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BMD_3550 b3abb5d787726182691f7f3f6d325ebb 283 Pfam PF00877 NlpC/P60 family 179 280 5.1E-29 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_3550 b3abb5d787726182691f7f3f6d325ebb 283 SUPERFAMILY SSF54001 160 283 2.98E-37 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_3550 b3abb5d787726182691f7f3f6d325ebb 283 Gene3D G3DSA:3.90.1720.10 158 283 1.1E-36 T 13-10-2018 BMD_3550 b3abb5d787726182691f7f3f6d325ebb 283 Gene3D G3DSA:2.30.30.40 52 119 9.4E-10 T 13-10-2018 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 SUPERFAMILY SSF50044 136 187 1.58E-6 T 13-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Gene3D G3DSA:3.30.1380.10 241 442 7.1E-76 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Pfam PF08239 Bacterial SH3 domain 54 105 2.0E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Pfam PF08239 Bacterial SH3 domain 193 243 6.5E-13 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Pfam PF08239 Bacterial SH3 domain 120 171 7.5E-14 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Gene3D G3DSA:2.30.30.40 108 172 3.0E-19 T 13-10-2018 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Gene3D G3DSA:2.30.30.40 184 240 3.4E-18 T 13-10-2018 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Gene3D G3DSA:2.30.30.40 45 106 2.8E-21 T 13-10-2018 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 SMART SM00287 44 108 4.2E-13 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3485 c568a06e4b60ecec3e078c893549511b 442 SMART SM00287 111 173 7.1E-11 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3485 c568a06e4b60ecec3e078c893549511b 442 SMART SM00287 184 246 3.9E-12 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_3485 c568a06e4b60ecec3e078c893549511b 442 SUPERFAMILY SSF55166 278 428 1.75E-34 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 SUPERFAMILY SSF50044 70 116 9.62E-7 T 13-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 BMD_3485 c568a06e4b60ecec3e078c893549511b 442 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 293 422 2.6E-40 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 26 254 9.0E-74 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 Gene3D G3DSA:3.40.710.10 31 270 7.3E-88 T 13-10-2018 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 Gene3D G3DSA:2.30.140.30 271 361 5.7E-28 T 13-10-2018 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 134 147 1.4E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 1.4E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 107 124 1.4E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 271 357 1.3E-4 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_4361 5dedf1f52c5a3ee3817f9a8c5c31bb84 382 SUPERFAMILY SSF56601 1 270 4.64E-68 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_4951 bddc990b3e9d9f4120ae39c83d923a7a 404 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 324 3.9E-45 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_4951 bddc990b3e9d9f4120ae39c83d923a7a 404 SUPERFAMILY SSF51905 3 209 1.21E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4951 bddc990b3e9d9f4120ae39c83d923a7a 404 SUPERFAMILY SSF51905 151 337 5.39E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4951 bddc990b3e9d9f4120ae39c83d923a7a 404 Gene3D G3DSA:3.50.50.100 1 404 5.7E-139 T 13-10-2018 BMD_4951 bddc990b3e9d9f4120ae39c83d923a7a 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.3E-6 T 13-10-2018 BMD_4951 bddc990b3e9d9f4120ae39c83d923a7a 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 158 176 8.3E-6 T 13-10-2018 BMD_4951 bddc990b3e9d9f4120ae39c83d923a7a 404 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 8.3E-6 T 13-10-2018 BMD_0070 713e1dfc40e36e060359cbd3b22b982e 185 Gene3D G3DSA:3.40.50.1470 1 185 3.3E-73 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 BMD_0070 713e1dfc40e36e060359cbd3b22b982e 185 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 107 117 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 BMD_0070 713e1dfc40e36e060359cbd3b22b982e 185 SUPERFAMILY SSF53178 2 185 1.44E-71 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 BMD_0070 713e1dfc40e36e060359cbd3b22b982e 185 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 BMD_0070 713e1dfc40e36e060359cbd3b22b982e 185 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 178 37.927 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BMD_0070 713e1dfc40e36e060359cbd3b22b982e 185 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 185 1.2E-72 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BMD_0070 713e1dfc40e36e060359cbd3b22b982e 185 Pfam PF01195 Peptidyl-tRNA hydrolase 3 185 1.2E-61 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BMD_0159 578fc779dcc31732d31e5d2c4aa241b9 129 PIRSF PIRSF002131 1 129 1.4E-53 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BMD_0159 578fc779dcc31732d31e5d2c4aa241b9 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 34.481 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BMD_0159 578fc779dcc31732d31e5d2c4aa241b9 129 Gene3D G3DSA:3.30.420.80 1 129 1.0E-53 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0159 578fc779dcc31732d31e5d2c4aa241b9 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.5E-58 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0159 578fc779dcc31732d31e5d2c4aa241b9 129 SUPERFAMILY SSF53137 14 129 1.63E-49 T 13-10-2018 BMD_0159 578fc779dcc31732d31e5d2c4aa241b9 129 Pfam PF00411 Ribosomal protein S11 19 128 1.9E-52 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BMD_0159 578fc779dcc31732d31e5d2c4aa241b9 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site BMD_3498 ee99ad989a2d2c942ba08651c4b080d5 551 SMART SM00631 65 275 4.5E-6 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 BMD_3498 ee99ad989a2d2c942ba08651c4b080d5 551 SUPERFAMILY SSF53187 63 337 3.64E-39 T 13-10-2018 BMD_3498 ee99ad989a2d2c942ba08651c4b080d5 551 Gene3D G3DSA:3.40.630.10 55 347 6.3E-33 T 13-10-2018 BMD_3498 ee99ad989a2d2c942ba08651c4b080d5 551 Pfam PF00246 Zinc carboxypeptidase 72 190 1.6E-17 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 SUPERFAMILY SSF52518 4 323 3.17E-117 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_3267 31ec74d723eca015ed16329b812a1f97 664 Pfam PF02779 Transketolase, pyrimidine binding domain 352 523 1.0E-45 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_3267 31ec74d723eca015ed16329b812a1f97 664 Gene3D G3DSA:3.40.50.970 1 334 5.8E-129 T 13-10-2018 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 ProSitePatterns PS00801 Transketolase signature 1. 14 34 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 SUPERFAMILY SSF52518 345 525 3.35E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_3267 31ec74d723eca015ed16329b812a1f97 664 Pfam PF02780 Transketolase, C-terminal domain 546 654 1.8E-11 T 13-10-2018 IPR033248 Transketolase, C-terminal domain BMD_3267 31ec74d723eca015ed16329b812a1f97 664 ProSitePatterns PS00802 Transketolase signature 2. 466 482 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 Gene3D G3DSA:3.40.50.920 537 664 3.7E-42 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 6 336 4.3E-148 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 SUPERFAMILY SSF52922 531 663 3.66E-39 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 9 662 5.3E-275 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 Gene3D G3DSA:3.40.50.970 335 536 3.2E-75 T 13-10-2018 BMD_3267 31ec74d723eca015ed16329b812a1f97 664 SMART SM00861 353 524 3.2E-67 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 Gene3D G3DSA:3.40.50.740 84 552 6.9E-158 T 13-10-2018 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 Pfam PF00384 Molybdopterin oxidoreductase 78 503 6.8E-87 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 Gene3D G3DSA:3.40.228.10 156 355 6.9E-158 T 13-10-2018 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 Pfam PF01568 Molydopterin dinucleotide binding domain 597 702 1.9E-27 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 20 72 9.6E-12 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 Gene3D G3DSA:2.40.40.20 594 709 1.1E-34 T 13-10-2018 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 Gene3D G3DSA:2.20.25.90 21 73 1.7E-9 T 13-10-2018 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 PIRSF PIRSF000144 67 660 2.9E-40 T 13-10-2018 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 SMART SM00926 19 75 3.8E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 SUPERFAMILY SSF50692 568 708 7.46E-34 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BMD_0779 32beef3a95d70694273c1f815f47f7cc 716 SUPERFAMILY SSF53706 20 579 1.14E-168 T 13-10-2018 BMD_1941 438cbc8864c46dda9f8d05df52c3a812 217 SUPERFAMILY SSF109604 2 210 5.16E-68 T 13-10-2018 BMD_1941 438cbc8864c46dda9f8d05df52c3a812 217 Pfam PF01966 HD domain 25 123 1.1E-7 T 13-10-2018 IPR006674 HD domain BMD_1941 438cbc8864c46dda9f8d05df52c3a812 217 Gene3D G3DSA:1.20.58.1910 98 216 4.9E-47 T 13-10-2018 BMD_1941 438cbc8864c46dda9f8d05df52c3a812 217 Gene3D G3DSA:1.10.472.50 1 97 4.8E-32 T 13-10-2018 BMD_1941 438cbc8864c46dda9f8d05df52c3a812 217 SMART SM00471 19 133 2.1E-8 T 13-10-2018 IPR003607 HD/PDEase domain BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 Gene3D G3DSA:1.10.10.60 385 442 6.2E-24 T 13-10-2018 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 Pfam PF04552 Sigma-54, DNA binding domain 284 443 7.0E-64 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 PIRSF PIRSF000774 1 444 2.0E-138 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 423 430 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 Gene3D G3DSA:1.10.10.1330 89 218 1.7E-21 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 331 350 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 50 7.1E-14 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 PRINTS PR00045 Sigma-54 factor signature 418 436 1.2E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 PRINTS PR00045 Sigma-54 factor signature 343 355 1.2E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 PRINTS PR00045 Sigma-54 factor signature 156 173 1.2E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 PRINTS PR00045 Sigma-54 factor signature 359 370 1.2E-24 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 Pfam PF04963 Sigma-54 factor, core binding domain 84 270 2.3E-46 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 BMD_0901 d4883b32a8db6914ed479ec63a459f4a 444 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 13 442 2.0E-132 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 Gene3D G3DSA:1.20.272.10 242 363 5.8E-8 T 13-10-2018 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 357 4.1E-146 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.0E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.0E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 SUPERFAMILY SSF52540 31 224 4.15E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.4E-45 T 13-10-2018 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 362 2.1E-14 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 Gene3D G3DSA:1.10.8.60 8 238 2.3E-107 T 13-10-2018 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 Gene3D G3DSA:3.40.50.300 13 177 2.3E-107 T 13-10-2018 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 SUPERFAMILY SSF48019 244 359 1.06E-23 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BMD_0024 db9cbbea6877b9ea96341aa46b376b16 562 SMART SM00382 37 179 1.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0979 15846d98c116df786959042e67bef41c 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_0979 15846d98c116df786959042e67bef41c 482 Gene3D G3DSA:3.40.605.10 33 463 1.3E-149 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_0979 15846d98c116df786959042e67bef41c 482 SUPERFAMILY SSF53720 6 477 4.58E-143 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_0979 15846d98c116df786959042e67bef41c 482 Pfam PF00171 Aldehyde dehydrogenase family 26 474 4.4E-151 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_0979 15846d98c116df786959042e67bef41c 482 Gene3D G3DSA:3.40.309.10 256 445 1.3E-149 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_3053 46201cc0cadb31c1052dd16989d34d64 52 SUPERFAMILY SSF54631 2 38 3.28E-7 T 13-10-2018 BMD_3053 46201cc0cadb31c1052dd16989d34d64 52 Gene3D G3DSA:3.10.580.10 1 51 7.0E-12 T 13-10-2018 BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 5.4E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 SUPERFAMILY SSF47413 1 56 1.72E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 Gene3D G3DSA:1.10.260.40 1 59 1.5E-22 T 13-10-2018 BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 Gene3D G3DSA:3.40.50.2300 159 290 8.1E-80 T 13-10-2018 BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 SMART SM00354 1 71 5.4E-37 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 SUPERFAMILY SSF53822 61 330 9.23E-83 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 Gene3D G3DSA:3.40.50.2300 62 309 8.1E-80 T 13-10-2018 BMD_3760 6930fd05fc8e7079a8528899ef3849ed 330 Pfam PF13377 Periplasmic binding protein-like domain 167 330 1.7E-38 T 13-10-2018 BMD_1575 384471117efd63196f915ecc5c929b44 241 SUPERFAMILY SSF161098 14 217 9.55E-41 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1575 384471117efd63196f915ecc5c929b44 241 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 123 4.1E-22 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_1575 384471117efd63196f915ecc5c929b44 241 Gene3D G3DSA:1.10.3720.10 3 232 9.5E-52 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1575 384471117efd63196f915ecc5c929b44 241 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 229 4.9E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 Gene3D G3DSA:1.20.1720.10 15 223 5.7E-35 T 13-10-2018 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 SUPERFAMILY SSF103473 5 473 1.28E-65 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 Pfam PF07690 Major Facilitator Superfamily 19 412 1.6E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 445 2.5E-91 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 4.7E-10 T 13-10-2018 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 78 100 4.7E-10 T 13-10-2018 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 304 328 4.7E-10 T 13-10-2018 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 4.7E-10 T 13-10-2018 BMD_0505 dd09ecace7f9a6fd80e27d18c2b8e3dd 478 Gene3D G3DSA:1.20.1250.20 261 477 3.3E-27 T 13-10-2018 BMD_1373 27542d03b3d03a785f0b7556eb52ea2e 127 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 127 72.751 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BMD_1373 27542d03b3d03a785f0b7556eb52ea2e 127 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 125 1.3E-58 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BMD_1373 27542d03b3d03a785f0b7556eb52ea2e 127 Gene3D G3DSA:2.40.40.20 1 125 3.6E-54 T 13-10-2018 BMD_1373 27542d03b3d03a785f0b7556eb52ea2e 127 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 97 1.0E-40 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BMD_1373 27542d03b3d03a785f0b7556eb52ea2e 127 SUPERFAMILY SSF50692 1 121 4.1E-50 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BMD_1373 27542d03b3d03a785f0b7556eb52ea2e 127 Pfam PF02261 Aspartate decarboxylase 1 114 1.8E-52 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BMD_1373 27542d03b3d03a785f0b7556eb52ea2e 127 PIRSF PIRSF006246 1 126 3.6E-54 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 SUPERFAMILY SSF82171 18 394 3.66E-48 T 13-10-2018 BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 SUPERFAMILY SSF53474 401 656 8.69E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 Pfam PF07676 WD40-like Beta Propeller Repeat 231 271 6.5E-4 T 13-10-2018 IPR011659 WD40-like Beta Propeller BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 Pfam PF07676 WD40-like Beta Propeller Repeat 196 215 0.0021 T 13-10-2018 IPR011659 WD40-like Beta Propeller BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 Pfam PF07676 WD40-like Beta Propeller Repeat 61 95 1.4E-11 T 13-10-2018 IPR011659 WD40-like Beta Propeller BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 Pfam PF00326 Prolyl oligopeptidase family 445 657 1.5E-55 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 Gene3D G3DSA:3.40.50.1820 405 659 1.3E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 Gene3D G3DSA:2.120.10.30 5 151 1.2E-31 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BMD_0639 c8ba48fa77f4680ea822f2d680d6869b 659 Gene3D G3DSA:2.120.10.30 152 296 5.3E-19 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 SUPERFAMILY SSF52218 65 211 1.16E-48 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 Gene3D G3DSA:2.40.30.10 232 442 8.2E-76 T 13-10-2018 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00369 Flavodoxin signature 148 158 3.3E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00369 Flavodoxin signature 172 191 3.3E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00369 Flavodoxin signature 68 81 3.3E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00369 Flavodoxin signature 116 127 3.3E-15 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PIRSF PIRSF000207 1 602 9.6E-270 T 13-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 Gene3D G3DSA:1.20.990.10 280 387 8.2E-76 T 13-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 Gene3D G3DSA:3.40.50.360 57 220 1.6E-50 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 Pfam PF00175 Oxidoreductase NAD-binding domain 460 566 2.3E-17 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 7 602 1.8E-271 T 13-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 SUPERFAMILY SSF63380 228 448 5.1E-66 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 Pfam PF00258 Flavodoxin 69 200 4.4E-32 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 Pfam PF00667 FAD binding domain 230 425 3.3E-33 T 13-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 Gene3D G3DSA:3.40.50.80 448 602 1.8E-59 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 528 544 5.5E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 484 493 5.5E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 270 280 5.5E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 389 396 5.5E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 551 559 5.5E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 459 478 5.5E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 497 508 5.5E-27 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BMD_3122 2fb35cdcf03923fc79618a1fbcabe438 602 SUPERFAMILY SSF52343 447 602 7.33E-51 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_1195 4806a9398cfe3eb2b7e2329148e26b59 232 Pfam PF04397 LytTr DNA-binding domain 136 224 7.8E-18 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_1195 4806a9398cfe3eb2b7e2329148e26b59 232 Gene3D G3DSA:3.40.50.2300 1 127 4.6E-28 T 13-10-2018 BMD_1195 4806a9398cfe3eb2b7e2329148e26b59 232 SUPERFAMILY SSF52172 2 125 1.57E-27 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1195 4806a9398cfe3eb2b7e2329148e26b59 232 SMART SM00850 134 232 3.0E-19 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_1195 4806a9398cfe3eb2b7e2329148e26b59 232 Pfam PF00072 Response regulator receiver domain 5 112 1.2E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1195 4806a9398cfe3eb2b7e2329148e26b59 232 SMART SM00448 1 112 3.0E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1195 4806a9398cfe3eb2b7e2329148e26b59 232 Gene3D G3DSA:2.40.50.40 128 194 9.2E-14 T 13-10-2018 BMD_2110 20a16b89e83dc5f37e9041eec2bd99d4 172 Gene3D G3DSA:3.40.1190.10 1 42 7.0E-6 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_2110 20a16b89e83dc5f37e9041eec2bd99d4 172 Pfam PF02875 Mur ligase family, glutamate ligase domain 40 86 6.9E-6 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BMD_2110 20a16b89e83dc5f37e9041eec2bd99d4 172 SUPERFAMILY SSF53244 41 166 8.24E-15 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_2110 20a16b89e83dc5f37e9041eec2bd99d4 172 Gene3D G3DSA:3.90.190.20 43 81 5.7E-7 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_2110 20a16b89e83dc5f37e9041eec2bd99d4 172 Gene3D G3DSA:3.90.190.20 82 169 6.1E-10 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4487 e8f7cd2e1f9ff8bc5ba72b8a79b3a43b 322 Gene3D G3DSA:3.30.420.40 7 315 2.2E-106 T 13-10-2018 BMD_4487 e8f7cd2e1f9ff8bc5ba72b8a79b3a43b 322 TIGRFAM TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase) 7 320 2.3E-121 T 13-10-2018 IPR004654 Glucokinase ROK GO:0004340|GO:0005737|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BMD_4487 e8f7cd2e1f9ff8bc5ba72b8a79b3a43b 322 Pfam PF00480 ROK family 7 319 1.9E-72 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BMD_4487 e8f7cd2e1f9ff8bc5ba72b8a79b3a43b 322 ProSitePatterns PS01125 ROK family signature. 139 166 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BMD_4487 e8f7cd2e1f9ff8bc5ba72b8a79b3a43b 322 SUPERFAMILY SSF53067 5 320 3.03E-71 T 13-10-2018 BMD_4487 e8f7cd2e1f9ff8bc5ba72b8a79b3a43b 322 Gene3D G3DSA:3.30.420.40 130 303 2.2E-106 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 Pfam PF13481 AAA domain 71 222 1.2E-18 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 SMART SM00382 90 244 4.0E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 Pfam PF13541 Subunit ChlI of Mg-chelatase 364 430 6.2E-9 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 Gene3D G3DSA:3.30.230.10 289 457 7.6E-19 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 SUPERFAMILY SSF52540 71 291 8.6E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 Hamap MF_01498 DNA repair protein RadA [radA]. 21 456 44.906 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 SUPERFAMILY SSF54211 255 457 7.97E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 452 2.8E-213 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 PRINTS PR01874 DNA repair protein radA signature 10 34 1.4E-93 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 PRINTS PR01874 DNA repair protein radA signature 124 141 1.4E-93 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 PRINTS PR01874 DNA repair protein radA signature 322 345 1.4E-93 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 PRINTS PR01874 DNA repair protein radA signature 213 241 1.4E-93 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 PRINTS PR01874 DNA repair protein radA signature 174 198 1.4E-93 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 PRINTS PR01874 DNA repair protein radA signature 82 110 1.4E-93 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 PRINTS PR01874 DNA repair protein radA signature 248 274 1.4E-93 T 13-10-2018 BMD_0106 3b6acde3ec4c1fb9eeb311b87ecea70c 458 Gene3D G3DSA:3.40.50.300 63 288 3.7E-45 T 13-10-2018 BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 SUPERFAMILY SSF52518 358 553 4.13E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 319 1.2E-35 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 SUPERFAMILY SSF52518 4 173 4.12E-47 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 SUPERFAMILY SSF52467 186 351 1.91E-48 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 Gene3D G3DSA:3.40.50.970 348 564 2.7E-61 T 13-10-2018 BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 Gene3D G3DSA:3.40.50.970 2 182 4.7E-60 T 13-10-2018 BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 381 526 2.0E-40 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 1.7E-46 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_2697 c538358be5ad3a6ba18b7ef628b63389 566 Gene3D G3DSA:3.40.50.1220 183 335 7.4E-51 T 13-10-2018 BMD_2591 27cc61963bf6f2d6a949811a86ee4b25 530 PIRSF PIRSF006060 1 529 3.0E-78 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2591 27cc61963bf6f2d6a949811a86ee4b25 530 Gene3D G3DSA:1.20.1740.10 7 468 8.2E-76 T 13-10-2018 BMD_2591 27cc61963bf6f2d6a949811a86ee4b25 530 Pfam PF13520 Amino acid permease 11 470 5.6E-46 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0795 50be3c95a9ddcc82ca179edf6a3a1a40 318 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 9 314 9.2E-118 T 13-10-2018 IPR020020 Luciferase-type oxidoreductase BMD_0795 50be3c95a9ddcc82ca179edf6a3a1a40 318 Pfam PF00296 Luciferase-like monooxygenase 28 230 3.3E-38 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_0795 50be3c95a9ddcc82ca179edf6a3a1a40 318 Gene3D G3DSA:3.20.20.30 1 317 8.4E-119 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_0795 50be3c95a9ddcc82ca179edf6a3a1a40 318 SUPERFAMILY SSF51679 19 311 4.97E-57 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_4745 f7beb7a5b607a82c92f93491b9d552b2 126 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 116 31.289 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BMD_4745 f7beb7a5b607a82c92f93491b9d552b2 126 SUPERFAMILY SSF56276 2 113 7.85E-40 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 BMD_4745 f7beb7a5b607a82c92f93491b9d552b2 126 Gene3D G3DSA:3.30.360.110 1 62 4.7E-26 T 13-10-2018 BMD_4745 f7beb7a5b607a82c92f93491b9d552b2 126 Gene3D G3DSA:3.30.160.750 63 125 8.2E-18 T 13-10-2018 BMD_4745 f7beb7a5b607a82c92f93491b9d552b2 126 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 3 112 1.3E-40 T 13-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BMD_4745 f7beb7a5b607a82c92f93491b9d552b2 126 Pfam PF02675 S-adenosylmethionine decarboxylase 7 112 2.0E-36 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BMD_4814 7e9f0971d1313ddd548d8a9bb7caa46f 270 Pfam PF07285 Protein of unknown function (DUF1444) 4 267 6.1E-130 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 BMD_4814 7e9f0971d1313ddd548d8a9bb7caa46f 270 PIRSF PIRSF012562 2 268 2.0E-133 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 BMD_4814 7e9f0971d1313ddd548d8a9bb7caa46f 270 Hamap MF_01548 UPF0354 protein . 4 268 47.366 T 13-10-2018 IPR010838 Protein of unknown unction DUF1444 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 SUPERFAMILY SSF103473 7 438 3.01E-74 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3529 06bc9644aaef609186355fc6fd345b06 459 Gene3D G3DSA:1.20.1250.20 5 439 4.7E-118 T 13-10-2018 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 PRINTS PR00171 Sugar transporter signature 17 27 1.8E-24 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 PRINTS PR00171 Sugar transporter signature 100 119 1.8E-24 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 PRINTS PR00171 Sugar transporter signature 342 363 1.8E-24 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 PRINTS PR00171 Sugar transporter signature 253 263 1.8E-24 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 PRINTS PR00171 Sugar transporter signature 365 377 1.8E-24 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 Pfam PF00083 Sugar (and other) transporter 12 440 1.0E-108 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BMD_3529 06bc9644aaef609186355fc6fd345b06 459 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 9 437 9.4E-107 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3112 948f77adbc1b0b517f3e8fe787379fbb 121 SUPERFAMILY SSF46458 7 116 1.5E-6 T 13-10-2018 IPR009050 Globin-like superfamily BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 8.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 8.4E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 Gene3D G3DSA:1.10.357.10 4 190 5.0E-48 T 13-10-2018 BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 Pfam PF16295 Tetracycline repressor, C-terminal all-alpha domain 58 189 8.0E-34 T 13-10-2018 IPR032551 HTH-type transcriptional repressor, C-terminal BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 1.5E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 SUPERFAMILY SSF48498 81 163 6.56E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 SUPERFAMILY SSF46689 6 73 2.94E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3249 93f1a066422432f93cd1a7bb0a1876e8 192 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 SUPERFAMILY SSF51905 2 322 2.79E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 Gene3D G3DSA:3.50.50.100 1 391 9.3E-120 T 13-10-2018 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 290 297 1.0E-6 T 13-10-2018 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.0E-6 T 13-10-2018 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 181 1.0E-6 T 13-10-2018 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 318 1.2E-47 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.1E-11 T 13-10-2018 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 275 297 1.1E-11 T 13-10-2018 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 1.1E-11 T 13-10-2018 BMD_2618 c0b4be1f0e442909053834a4c22822a6 392 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.1E-11 T 13-10-2018 BMD_4571 905ce2fa50344888d2af6826128330f4 368 Pfam PF01926 50S ribosome-binding GTPase 164 226 5.7E-14 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4571 905ce2fa50344888d2af6826128330f4 368 Gene3D G3DSA:3.40.50.300 58 226 4.5E-52 T 13-10-2018 BMD_4571 905ce2fa50344888d2af6826128330f4 368 TIGRFAM TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH 7 368 3.9E-162 T 13-10-2018 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH BMD_4571 905ce2fa50344888d2af6826128330f4 368 SUPERFAMILY SSF52540 71 281 1.19E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4741 ce6e75790b4affa4c444756e7e0e8bfa 310 Pfam PF01695 IstB-like ATP binding protein 130 272 1.8E-10 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 BMD_4741 ce6e75790b4affa4c444756e7e0e8bfa 310 SUPERFAMILY SSF52540 125 273 1.58E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4741 ce6e75790b4affa4c444756e7e0e8bfa 310 Pfam PF07319 Primosomal protein DnaI N-terminus 1 98 3.1E-28 T 13-10-2018 IPR009928 Primosomal DnaI, N-terminal BMD_4741 ce6e75790b4affa4c444756e7e0e8bfa 310 Gene3D G3DSA:3.40.50.300 108 302 1.5E-50 T 13-10-2018 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 Gene3D G3DSA:3.40.190.10 39 322 7.9E-126 T 13-10-2018 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PIRSF PIRSF019574 1 356 2.1E-135 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 Gene3D G3DSA:3.40.190.10 139 330 7.9E-126 T 13-10-2018 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 Pfam PF13416 Bacterial extracellular solute-binding protein 50 321 2.7E-46 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 83 97 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 56 77 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 174 193 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 99 112 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 130 146 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 211 230 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 40 56 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 255 274 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 300 326 1.7E-60 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BMD_0207 1de8fa57156f27ada1070895b7f232a2 357 SUPERFAMILY SSF53850 34 353 9.71E-102 T 13-10-2018 BMD_0345 27d21d3e812222fbf913c093333c96af 401 SUPERFAMILY SSF52540 70 353 1.5E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0345 27d21d3e812222fbf913c093333c96af 401 Gene3D G3DSA:3.40.50.300 212 400 1.3E-42 T 13-10-2018 BMD_0345 27d21d3e812222fbf913c093333c96af 401 Pfam PF00271 Helicase conserved C-terminal domain 225 333 5.7E-27 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0345 27d21d3e812222fbf913c093333c96af 401 SMART SM00490 252 333 3.7E-28 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0345 27d21d3e812222fbf913c093333c96af 401 Pfam PF00270 DEAD/DEAH box helicase 25 189 7.0E-40 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_0345 27d21d3e812222fbf913c093333c96af 401 SMART SM00487 20 217 6.7E-52 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_0345 27d21d3e812222fbf913c093333c96af 401 Gene3D G3DSA:3.40.50.300 2 205 1.0E-63 T 13-10-2018 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 Pfam PF01235 Sodium:alanine symporter family 45 440 8.0E-161 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 TIGRFAM TIGR00835 agcS: amino acid carrier protein 10 428 4.6E-157 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PIRSF PIRSF006060 45 255 5.3E-10 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PIRSF PIRSF006060 266 442 4.3 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 84 99 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PRINTS PR00175 Sodium/alanine symporter signature 84 106 1.1E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PRINTS PR00175 Sodium/alanine symporter signature 293 311 1.1E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PRINTS PR00175 Sodium/alanine symporter signature 174 192 1.1E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PRINTS PR00175 Sodium/alanine symporter signature 337 359 1.1E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PRINTS PR00175 Sodium/alanine symporter signature 397 417 1.1E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0805 1d5144cf5c3df759166963d5724421c9 469 PRINTS PR00175 Sodium/alanine symporter signature 202 221 1.1E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3677 33d13ea9d3c7712df3c89702665c49df 120 Gene3D G3DSA:1.10.3730.20 1 108 1.1E-35 T 13-10-2018 BMD_3677 33d13ea9d3c7712df3c89702665c49df 120 SUPERFAMILY SSF103481 5 105 1.02E-20 T 13-10-2018 BMD_3677 33d13ea9d3c7712df3c89702665c49df 120 Pfam PF00893 Small Multidrug Resistance protein 2 93 1.6E-29 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 PIRSF PIRSF000804 1 378 1.5E-116 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 Pfam PF02767 DNA polymerase III beta subunit, central domain 137 251 1.1E-38 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 SUPERFAMILY SSF55979 254 377 8.17E-31 T 13-10-2018 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 SUPERFAMILY SSF55979 1 127 5.18E-24 T 13-10-2018 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 377 1.1E-125 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 Gene3D G3DSA:3.70.10.10 145 375 6.7E-137 T 13-10-2018 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 127 1.4E-39 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 Gene3D G3DSA:3.10.150.10 1 250 6.7E-137 T 13-10-2018 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 254 376 1.0E-35 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 SUPERFAMILY SSF55979 133 251 1.24E-27 T 13-10-2018 BMD_0002 3b9aa93aebde4a4042fe24cfcdae12ab 378 SMART SM00480 17 373 1.3E-168 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BMD_3802 58b688fdf469f2b9d6c1b20cc9e149b1 399 Pfam PF05977 Transmembrane secretion effector 272 392 5.7E-6 T 13-10-2018 IPR010290 Transmembrane secretion effector BMD_3802 58b688fdf469f2b9d6c1b20cc9e149b1 399 Gene3D G3DSA:1.20.1250.20 5 379 3.0E-57 T 13-10-2018 BMD_3802 58b688fdf469f2b9d6c1b20cc9e149b1 399 SUPERFAMILY SSF103473 1 390 8.37E-65 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3802 58b688fdf469f2b9d6c1b20cc9e149b1 399 Pfam PF07690 Major Facilitator Superfamily 16 240 1.0E-31 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1171 3aa6cb704ac6c7a5321d57020628e53b 121 Gene3D G3DSA:1.10.1660.10 1 111 1.5E-18 T 13-10-2018 BMD_1171 3aa6cb704ac6c7a5321d57020628e53b 121 Pfam PF13411 MerR HTH family regulatory protein 2 58 3.0E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1171 3aa6cb704ac6c7a5321d57020628e53b 121 SUPERFAMILY SSF46955 2 86 6.23E-16 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_1171 3aa6cb704ac6c7a5321d57020628e53b 121 SMART SM00422 1 61 4.0E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 Pfam PF01206 Sulfurtransferase TusA 7 75 9.1E-22 T 13-10-2018 IPR001455 TusA-like domain BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 Gene3D G3DSA:3.30.110.40 1 76 2.9E-28 T 13-10-2018 IPR036868 TusA-like domain superfamily BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 SUPERFAMILY SSF52821 78 179 4.85E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 8 32 - T 13-10-2018 IPR001455 TusA-like domain BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 SUPERFAMILY SSF64307 3 76 1.18E-23 T 13-10-2018 IPR036868 TusA-like domain superfamily BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 SMART SM00450 89 183 7.4E-22 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 Gene3D G3DSA:3.40.250.10 86 183 4.2E-28 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3345 782551a9702e5e0c61a94d06f7c98231 183 Pfam PF00581 Rhodanese-like domain 90 179 1.8E-14 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_0492 e0b8893539381d867d4a64d4cb51cfa9 335 Gene3D G3DSA:2.20.150.10 20 116 1.4E-96 T 13-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 BMD_0492 e0b8893539381d867d4a64d4cb51cfa9 335 SUPERFAMILY SSF53613 13 325 1.12E-71 T 13-10-2018 IPR029056 Ribokinase-like BMD_0492 e0b8893539381d867d4a64d4cb51cfa9 335 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 269 282 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_0492 e0b8893539381d867d4a64d4cb51cfa9 335 Pfam PF00294 pfkB family carbohydrate kinase 16 317 4.9E-64 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_0492 e0b8893539381d867d4a64d4cb51cfa9 335 Hamap MF_01668 5-dehydro-2-deoxygluconokinase [iolC]. 8 329 55.572 T 13-10-2018 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes GO:0016310|GO:0047590 KEGG: 00562+2.7.1.92 BMD_0492 e0b8893539381d867d4a64d4cb51cfa9 335 Gene3D G3DSA:3.40.1190.20 15 304 1.4E-96 T 13-10-2018 IPR029056 Ribokinase-like BMD_0492 e0b8893539381d867d4a64d4cb51cfa9 335 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 12 325 4.6E-124 T 13-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 BMD_5036 9322392dcd6abd3de76488efb7d88ed4 251 Pfam PF00121 Triosephosphate isomerase 5 246 4.8E-94 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5036 9322392dcd6abd3de76488efb7d88ed4 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 241 1.8E-57 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5036 9322392dcd6abd3de76488efb7d88ed4 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 61.165 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5036 9322392dcd6abd3de76488efb7d88ed4 251 Gene3D G3DSA:3.20.20.70 2 251 1.5E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_5036 9322392dcd6abd3de76488efb7d88ed4 251 SUPERFAMILY SSF51351 1 248 6.81E-95 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5036 9322392dcd6abd3de76488efb7d88ed4 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5221 3095971fc1912835adbb86a441432299 258 SUPERFAMILY SSF53474 5 254 6.49E-45 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_5221 3095971fc1912835adbb86a441432299 258 Pfam PF00756 Putative esterase 25 252 2.6E-25 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 BMD_5221 3095971fc1912835adbb86a441432299 258 Gene3D G3DSA:3.40.50.1820 1 257 2.6E-74 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3089 015bd6fea447092ae5ddf17631d85118 254 Gene3D G3DSA:3.40.630.30 38 245 3.5E-17 T 13-10-2018 BMD_3089 015bd6fea447092ae5ddf17631d85118 254 Pfam PF13673 Acetyltransferase (GNAT) domain 137 242 8.8E-9 T 13-10-2018 IPR000182 GNAT domain BMD_3089 015bd6fea447092ae5ddf17631d85118 254 SUPERFAMILY SSF55729 120 250 1.44E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_5164 703faef51df7209c8209118fe74fc772 535 Pfam PF06418 CTP synthase N-terminus 3 267 1.6E-130 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BMD_5164 703faef51df7209c8209118fe74fc772 535 Hamap MF_01227 CTP synthase [pyrG]. 2 532 53.074 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BMD_5164 703faef51df7209c8209118fe74fc772 535 Pfam PF00117 Glutamine amidotransferase class-I 302 526 5.2E-59 T 13-10-2018 IPR017926 Glutamine amidotransferase BMD_5164 703faef51df7209c8209118fe74fc772 535 TIGRFAM TIGR00337 PyrG: CTP synthase 1 527 3.4E-266 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BMD_5164 703faef51df7209c8209118fe74fc772 535 SUPERFAMILY SSF52317 291 529 8.52E-85 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_5164 703faef51df7209c8209118fe74fc772 535 SUPERFAMILY SSF52540 1 270 9.11E-128 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5164 703faef51df7209c8209118fe74fc772 535 Gene3D G3DSA:3.40.50.300 1 286 1.1E-136 T 13-10-2018 BMD_5164 703faef51df7209c8209118fe74fc772 535 Gene3D G3DSA:3.40.50.880 288 535 7.5E-103 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1987 9f461f8e688a6f6858aec6f1d3a97ed8 255 Pfam PF01522 Polysaccharide deacetylase 43 162 1.0E-35 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_1987 9f461f8e688a6f6858aec6f1d3a97ed8 255 SUPERFAMILY SSF88713 36 236 4.2E-68 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_1987 9f461f8e688a6f6858aec6f1d3a97ed8 255 Gene3D G3DSA:3.20.20.370 27 244 4.6E-75 T 13-10-2018 BMD_4875 129a0e2abff0f8bca15ae19db75b5a95 272 Gene3D G3DSA:3.90.226.10 1 209 2.1E-77 T 13-10-2018 BMD_4875 129a0e2abff0f8bca15ae19db75b5a95 272 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 5 271 56.861 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 BMD_4875 129a0e2abff0f8bca15ae19db75b5a95 272 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 267 7.7E-91 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_4875 129a0e2abff0f8bca15ae19db75b5a95 272 Gene3D G3DSA:1.10.12.10 210 260 6.5E-29 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BMD_4875 129a0e2abff0f8bca15ae19db75b5a95 272 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 110 130 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BMD_4875 129a0e2abff0f8bca15ae19db75b5a95 272 TIGRFAM TIGR01929 menB: naphthoate synthase 11 268 1.1E-133 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 BMD_4875 129a0e2abff0f8bca15ae19db75b5a95 272 SUPERFAMILY SSF52096 4 268 3.42E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_3609 3ad47b0ba27d862405193a1449686bfa 530 Pfam PF01144 Coenzyme A transferase 14 250 9.3E-47 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_3609 3ad47b0ba27d862405193a1449686bfa 530 Gene3D G3DSA:3.40.1080.10 280 526 5.3E-104 T 13-10-2018 BMD_3609 3ad47b0ba27d862405193a1449686bfa 530 SMART SM00882 13 251 5.5E-59 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_3609 3ad47b0ba27d862405193a1449686bfa 530 SUPERFAMILY SSF100950 281 521 1.71E-65 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_3609 3ad47b0ba27d862405193a1449686bfa 530 SUPERFAMILY SSF100950 13 259 1.81E-85 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_3609 3ad47b0ba27d862405193a1449686bfa 530 PIRSF PIRSF000858 9 528 7.0E-206 T 13-10-2018 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 Reactome: R-HSA-77108 BMD_3609 3ad47b0ba27d862405193a1449686bfa 530 Gene3D G3DSA:3.40.1080.10 2 273 4.7E-110 T 13-10-2018 BMD_0973 8c6ec18fb4cce549772bf90d62f683c1 326 Gene3D G3DSA:3.40.50.720 122 293 2.7E-87 T 13-10-2018 BMD_0973 8c6ec18fb4cce549772bf90d62f683c1 326 SMART SM00829 13 323 2.2E-30 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_0973 8c6ec18fb4cce549772bf90d62f683c1 326 Gene3D G3DSA:3.90.180.10 14 321 2.7E-87 T 13-10-2018 BMD_0973 8c6ec18fb4cce549772bf90d62f683c1 326 SUPERFAMILY SSF51735 114 252 2.43E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0973 8c6ec18fb4cce549772bf90d62f683c1 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 1.2E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_0973 8c6ec18fb4cce549772bf90d62f683c1 326 SUPERFAMILY SSF50129 10 141 1.37E-37 T 13-10-2018 IPR011032 GroES-like superfamily BMD_0973 8c6ec18fb4cce549772bf90d62f683c1 326 Pfam PF00107 Zinc-binding dehydrogenase 153 264 8.5E-23 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_2770 c28ba4cc33cf0292c915e672895e60e6 389 Pfam PF00266 Aminotransferase class-V 5 367 5.1E-80 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_2770 c28ba4cc33cf0292c915e672895e60e6 389 Gene3D G3DSA:3.40.640.10 16 257 2.4E-142 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_2770 c28ba4cc33cf0292c915e672895e60e6 389 Gene3D G3DSA:3.90.1150.10 5 374 2.4E-142 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_2770 c28ba4cc33cf0292c915e672895e60e6 389 PIRSF PIRSF005572 2 382 1.0E-129 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BMD_2770 c28ba4cc33cf0292c915e672895e60e6 389 SUPERFAMILY SSF53383 4 374 1.05E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4463 b77763fda6faf59705683c9cff3ec0d6 132 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 23 132 2.0E-11 T 13-10-2018 BMD_1505 c671e988bb8025c9868e23bf9ee619e6 44 Pfam PF12606 Tumour necrosis factor receptor superfamily member 19 1 43 1.6E-14 T 13-10-2018 IPR022248 TNF receptor family, RELT BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 Pfam PF13412 Winged helix-turn-helix DNA-binding 17 59 3.0E-6 T 13-10-2018 BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 SUPERFAMILY SSF53067 83 379 2.75E-55 T 13-10-2018 BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 Gene3D G3DSA:3.30.420.40 84 379 9.1E-91 T 13-10-2018 BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 SUPERFAMILY SSF46785 11 77 2.27E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 Pfam PF00480 ROK family 86 378 1.3E-87 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 Gene3D G3DSA:3.30.420.40 207 361 9.1E-91 T 13-10-2018 BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 ProSitePatterns PS01125 ROK family signature. 216 243 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BMD_1857 9b47caa7d24948771cbd850ac7500f92 388 Gene3D G3DSA:1.10.10.10 3 79 9.8E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 Gene3D G3DSA:3.40.50.12780 2 388 9.9E-120 T 13-10-2018 BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 Pfam PF00501 AMP-binding enzyme 12 391 2.6E-91 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 SUPERFAMILY SSF56801 4 482 4.06E-133 T 13-10-2018 BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 Pfam PF13193 AMP-binding enzyme C-terminal domain 400 473 4.8E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 31 479 4.7E-150 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 Gene3D G3DSA:3.30.300.310 389 486 5.0E-32 T 13-10-2018 BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 Hamap MF_00731 2-succinylbenzoate--CoA ligase [menE]. 6 482 47.002 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 BMD_4874 4b48882204c66bb3ecc9444fff59a44e 487 ProSitePatterns PS00455 Putative AMP-binding domain signature. 150 161 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_2979 2024d0ab790e5e2884699ad09760c81d 368 SUPERFAMILY SSF53448 32 321 3.46E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2979 2024d0ab790e5e2884699ad09760c81d 368 Gene3D G3DSA:3.90.550.10 17 259 6.1E-32 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2979 2024d0ab790e5e2884699ad09760c81d 368 Pfam PF00535 Glycosyl transferase family 2 40 211 4.0E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01270 Histone deacetylase superfamily signature 249 259 1.4E-17 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01270 Histone deacetylase superfamily signature 130 153 1.4E-17 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01270 Histone deacetylase superfamily signature 163 178 1.4E-17 T 13-10-2018 IPR000286 Histone deacetylase family Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 Pfam PF00850 Histone deacetylase domain 22 314 2.4E-76 T 13-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 Gene3D G3DSA:3.40.800.20 3 355 7.9E-99 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01272 Acetoin utilisation ACUC protein signature 86 100 3.9E-40 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01272 Acetoin utilisation ACUC protein signature 274 290 3.9E-40 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01272 Acetoin utilisation ACUC protein signature 16 36 3.9E-40 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01272 Acetoin utilisation ACUC protein signature 350 369 3.9E-40 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01272 Acetoin utilisation ACUC protein signature 107 120 3.9E-40 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01272 Acetoin utilisation ACUC protein signature 313 332 3.9E-40 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 PRINTS PR01272 Acetoin utilisation ACUC protein signature 333 349 3.9E-40 T 13-10-2018 IPR003085 Acetoin utilization protein AcuC GO:0045149 BMD_4801 bc4016c1aa4a0d04d4b2c3c73297ad8f 387 SUPERFAMILY SSF52768 6 373 1.15E-105 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_2777 f4834b439373f7fc8ddfd1852f0dd79b 202 Gene3D G3DSA:1.10.357.10 5 187 2.8E-46 T 13-10-2018 BMD_2777 f4834b439373f7fc8ddfd1852f0dd79b 202 SUPERFAMILY SSF46689 7 74 9.48E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2777 f4834b439373f7fc8ddfd1852f0dd79b 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 60 1.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2777 f4834b439373f7fc8ddfd1852f0dd79b 202 Pfam PF14278 Transcriptional regulator C-terminal region 93 170 2.7E-15 T 13-10-2018 IPR039532 Transcriptional regulator TetR, C-terminal, Firmicutes type BMD_1212 019231f473df8b14d6af1c930d012cff 159 TIGRFAM TIGR02719 repress_PhaQ: poly-beta-hydroxybutyrate-responsive repressor 17 153 1.2E-85 T 13-10-2018 IPR014091 Transcriptional repressor poly-beta-hydroxybutyrate-responsive BMD_1212 019231f473df8b14d6af1c930d012cff 159 Pfam PF03551 Transcriptional regulator PadR-like family 45 115 6.0E-20 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal BMD_1212 019231f473df8b14d6af1c930d012cff 159 SUPERFAMILY SSF46785 29 128 2.2E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1212 019231f473df8b14d6af1c930d012cff 159 Gene3D G3DSA:1.10.10.10 29 140 1.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3863 692093dbbfa167e2380467ee4986866b 223 SMART SM00448 1 111 3.5E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3863 692093dbbfa167e2380467ee4986866b 223 Gene3D G3DSA:3.40.50.2300 1 120 1.5E-30 T 13-10-2018 BMD_3863 692093dbbfa167e2380467ee4986866b 223 SUPERFAMILY SSF52172 1 123 3.42E-35 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3863 692093dbbfa167e2380467ee4986866b 223 SUPERFAMILY SSF46894 126 221 1.87E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_3863 692093dbbfa167e2380467ee4986866b 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 2.8E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3863 692093dbbfa167e2380467ee4986866b 223 SMART SM00862 147 222 2.1E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3863 692093dbbfa167e2380467ee4986866b 223 Gene3D G3DSA:1.10.10.10 121 223 7.9E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3863 692093dbbfa167e2380467ee4986866b 223 Pfam PF00072 Response regulator receiver domain 3 111 1.6E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2797 b924fc073225b57b10fc2ccc77a83344 181 Gene3D G3DSA:2.160.10.10 1 181 5.6E-71 T 13-10-2018 BMD_2797 b924fc073225b57b10fc2ccc77a83344 181 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 128 156 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BMD_2797 b924fc073225b57b10fc2ccc77a83344 181 SUPERFAMILY SSF51161 53 179 1.3E-39 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_2797 b924fc073225b57b10fc2ccc77a83344 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 119 154 6.8E-10 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_0149 197e821986896116a81cf9125afe29ff 179 PRINTS PR00059 Ribosomal protein L6 signature 71 96 3.8E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BMD_0149 197e821986896116a81cf9125afe29ff 179 PRINTS PR00059 Ribosomal protein L6 signature 141 162 3.8E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BMD_0149 197e821986896116a81cf9125afe29ff 179 PRINTS PR00059 Ribosomal protein L6 signature 99 115 3.8E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BMD_0149 197e821986896116a81cf9125afe29ff 179 Pfam PF00347 Ribosomal protein L6 90 164 2.2E-21 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0149 197e821986896116a81cf9125afe29ff 179 Pfam PF00347 Ribosomal protein L6 12 82 2.1E-23 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0149 197e821986896116a81cf9125afe29ff 179 Gene3D G3DSA:3.90.930.12 83 178 5.2E-41 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0149 197e821986896116a81cf9125afe29ff 179 PIRSF PIRSF002162 1 177 6.6E-52 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0149 197e821986896116a81cf9125afe29ff 179 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0149 197e821986896116a81cf9125afe29ff 179 SUPERFAMILY SSF56053 83 176 3.74E-35 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0149 197e821986896116a81cf9125afe29ff 179 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 39.954 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BMD_0149 197e821986896116a81cf9125afe29ff 179 Gene3D G3DSA:3.90.930.12 1 82 1.6E-33 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0149 197e821986896116a81cf9125afe29ff 179 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 3.0E-78 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BMD_0149 197e821986896116a81cf9125afe29ff 179 SUPERFAMILY SSF56053 1 82 2.4E-29 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0833 da0855b0229553300102988be207e9bd 422 Pfam PF00375 Sodium:dicarboxylate symporter family 8 400 2.0E-110 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_0833 da0855b0229553300102988be207e9bd 422 Gene3D G3DSA:1.10.3860.10 2 413 3.2E-123 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_0833 da0855b0229553300102988be207e9bd 422 PRINTS PR00173 Glutamate-aspartate symporter signature 43 63 7.9E-34 T 13-10-2018 BMD_0833 da0855b0229553300102988be207e9bd 422 PRINTS PR00173 Glutamate-aspartate symporter signature 2 22 7.9E-34 T 13-10-2018 BMD_0833 da0855b0229553300102988be207e9bd 422 PRINTS PR00173 Glutamate-aspartate symporter signature 73 98 7.9E-34 T 13-10-2018 BMD_0833 da0855b0229553300102988be207e9bd 422 PRINTS PR00173 Glutamate-aspartate symporter signature 144 166 7.9E-34 T 13-10-2018 BMD_0833 da0855b0229553300102988be207e9bd 422 PRINTS PR00173 Glutamate-aspartate symporter signature 326 345 7.9E-34 T 13-10-2018 BMD_0833 da0855b0229553300102988be207e9bd 422 PRINTS PR00173 Glutamate-aspartate symporter signature 291 317 7.9E-34 T 13-10-2018 BMD_0833 da0855b0229553300102988be207e9bd 422 SUPERFAMILY SSF118215 8 401 2.22E-119 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_0833 da0855b0229553300102988be207e9bd 422 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 294 317 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_4182 322a2e0a56c281e44ea8ea7ee6d38c94 149 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 98 146 4.1E-13 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BMD_4182 322a2e0a56c281e44ea8ea7ee6d38c94 149 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BMD_4182 322a2e0a56c281e44ea8ea7ee6d38c94 149 Pfam PF00460 Flagella basal body rod protein 7 34 1.5E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BMD_4182 322a2e0a56c281e44ea8ea7ee6d38c94 149 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 149 4.1E-50 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 274 328 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 405 424 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 118 142 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 221 240 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 272 293 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 342 363 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 192 210 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 318 333 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 160 172 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 377 395 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 455 476 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 44 69 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 PRINTS PR01165 Cytochrome c oxidase subunit I signature 91 114 1.3E-98 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 TIGRFAM TIGR02882 QoxB: cytochrome aa3 quinol oxidase, subunit I 2 640 0.0 T 13-10-2018 IPR014233 Quinol oxidase subunit I GO:0005507|GO:0016021|GO:0016682|GO:0020037|GO:0055114 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 53 499 5.6E-144 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 Gene3D G3DSA:1.20.210.10 28 558 2.3E-199 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3155 23ab8032fd8951c39a2dbf894afcabdd 647 SUPERFAMILY SSF81442 42 552 4.06E-178 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 104 128 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 281 305 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 400 424 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 180 203 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 367 392 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 147 171 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 220 245 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 PRINTS PR00758 Arsenical pump membrane protein signature 326 348 5.5E-110 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 Pfam PF02040 Arsenical pump membrane protein 6 428 7.5E-226 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1906 7a1732032a4cc950ec48bdde547967bb 432 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 6 430 3.6E-222 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1110 5007f849bc87eec9450249bed50fdc47 97 Pfam PF00005 ABC transporter 45 93 1.5E-8 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1110 5007f849bc87eec9450249bed50fdc47 97 SUPERFAMILY SSF52540 28 95 4.07E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1110 5007f849bc87eec9450249bed50fdc47 97 Gene3D G3DSA:3.40.50.300 28 95 6.7E-23 T 13-10-2018 BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 Pfam PF07702 UTRA domain 96 228 2.6E-23 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 Gene3D G3DSA:1.10.10.10 6 73 3.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 SUPERFAMILY SSF46785 6 83 6.82E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 SMART SM00345 14 73 9.9E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 SMART SM00866 94 231 2.9E-19 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 7.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 7.2E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 Gene3D G3DSA:3.40.1410.10 75 236 1.4E-28 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 7.3E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_1491 6b39fb552e548899d05eff5a5bff6e1f 238 SUPERFAMILY SSF64288 61 236 1.24E-32 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_3148 1755b1e434ee28a653cad9601f069454 275 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 53 196 2.7E-48 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_3148 1755b1e434ee28a653cad9601f069454 275 Gene3D G3DSA:1.10.260.150 24 275 2.6E-85 T 13-10-2018 BMD_3148 1755b1e434ee28a653cad9601f069454 275 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 54 195 7.8E-48 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 SUPERFAMILY SSF52540 50 293 1.26E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 Gene3D G3DSA:3.40.50.300 29 223 3.7E-57 T 13-10-2018 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 TIGRFAM TIGR02881 spore_V_K: stage V sporulation protein K 48 309 7.9E-133 T 13-10-2018 IPR014232 Sporulation stage V, protein K BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 SMART SM00382 88 226 1.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 51 65 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 91 106 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 271 283 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 194 211 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 129 143 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 211 230 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 173 185 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 PRINTS PR00819 CbxX/CfqX superfamily signature 143 162 5.2E-60 T 13-10-2018 IPR000641 CbxX/CfqX GO:0005524 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 Gene3D G3DSA:1.10.8.60 224 311 1.2E-19 T 13-10-2018 BMD_4091 7c4ae5fe8c46c08071d653b58e909682 311 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 92 223 1.8E-18 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_4139 abff79734f2e708a0e37dd2e5eae40ca 99 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 9 94 4.0E-19 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 BMD_4139 abff79734f2e708a0e37dd2e5eae40ca 99 SUPERFAMILY SSF55315 4 97 1.55E-27 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_4139 abff79734f2e708a0e37dd2e5eae40ca 99 Gene3D G3DSA:3.30.1330.30 1 99 3.3E-39 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 Gene3D G3DSA:1.10.1040.10 193 278 4.1E-36 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 183 208 - T 13-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 SUPERFAMILY SSF51735 2 185 7.06E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 PIRSF PIRSF000105 1 284 2.2E-94 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 282 2.8E-35 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 SUPERFAMILY SSF48179 185 283 2.81E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 183 2.1E-65 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_5170 78384edd1ae8351d27f0ecd40af001f9 284 Gene3D G3DSA:3.40.50.720 1 184 7.5E-71 T 13-10-2018 BMD_4667 e186696b7b88001fdae51cc8d809e3c2 429 SUPERFAMILY SSF53383 4 426 5.57E-131 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4667 e186696b7b88001fdae51cc8d809e3c2 429 Gene3D G3DSA:3.40.640.10 72 319 2.3E-182 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4667 e186696b7b88001fdae51cc8d809e3c2 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 273 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4667 e186696b7b88001fdae51cc8d809e3c2 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 426 3.4E-200 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BMD_4667 e186696b7b88001fdae51cc8d809e3c2 429 Gene3D G3DSA:3.90.1150.10 10 421 2.3E-182 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4667 e186696b7b88001fdae51cc8d809e3c2 429 Pfam PF00202 Aminotransferase class-III 34 395 1.6E-76 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4667 e186696b7b88001fdae51cc8d809e3c2 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 427 104.362 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 220 242 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 Gene3D G3DSA:3.40.50.720 1 161 2.2E-32 T 13-10-2018 BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 SUPERFAMILY SSF51735 2 156 3.16E-24 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 97 6.3E-19 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 Gene3D G3DSA:1.10.3730.10 162 262 4.4E-15 T 13-10-2018 BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 166 260 2.4E-16 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 SUPERFAMILY SSF48179 161 262 1.16E-18 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_4564 0ab389d1f4737af0b99df64fdcbcef12 276 PIRSF PIRSF000193 1 265 6.3E-70 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BMD_0283 2a330236d7e91460fcbf4054d2823076 85 Pfam PF11127 Protein of unknown function (DUF2892) 1 61 2.1E-12 T 13-10-2018 IPR021309 Protein of unknown function DUF2892 BMD_0416 8b4fa921eef6a41662538a8fffe1888f 156 Pfam PF00578 AhpC/TSA family 5 132 6.1E-40 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_0416 8b4fa921eef6a41662538a8fffe1888f 156 Gene3D G3DSA:3.40.30.10 1 155 2.3E-53 T 13-10-2018 BMD_0416 8b4fa921eef6a41662538a8fffe1888f 156 PIRSF PIRSF000239 1 153 3.1E-29 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_0416 8b4fa921eef6a41662538a8fffe1888f 156 SUPERFAMILY SSF52833 4 153 2.67E-53 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 Gene3D G3DSA:3.30.9.50 75 270 2.3E-51 T 13-10-2018 BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 9.3E-22 T 13-10-2018 BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 9.3E-22 T 13-10-2018 BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 9.3E-22 T 13-10-2018 BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 9.3E-22 T 13-10-2018 BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 SUPERFAMILY SSF51905 4 348 1.15E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 Gene3D G3DSA:3.50.50.60 6 337 2.3E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2157 a32bf7a8719b6c539379d24dd25c560a 362 Pfam PF01494 FAD binding domain 5 339 7.5E-34 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 Gene3D G3DSA:3.40.50.620 175 403 2.0E-77 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 Pfam PF02926 THUMP domain 44 162 5.8E-20 T 13-10-2018 IPR004114 THUMP domain GO:0003723 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 SUPERFAMILY SSF143437 3 173 1.45E-53 T 13-10-2018 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 SMART SM00981 74 165 8.1E-23 T 13-10-2018 IPR004114 THUMP domain GO:0003723 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 403 162.221 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 370 6.5E-67 T 13-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 Gene3D G3DSA:3.30.2130.30 1 174 7.9E-61 T 13-10-2018 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 6 373 6.7E-133 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 BMD_4789 8790019db3f9ca6dc6e9e88e89389f3e 403 SUPERFAMILY SSF52402 174 383 1.94E-51 T 13-10-2018 BMD_0327 81ff66c6940063f4c5d6abad2760157a 139 Pfam PF02566 OsmC-like protein 42 137 2.1E-19 T 13-10-2018 IPR003718 OsmC/Ohr family BMD_0327 81ff66c6940063f4c5d6abad2760157a 139 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 4 138 1.8E-47 T 13-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 BMD_0327 81ff66c6940063f4c5d6abad2760157a 139 SUPERFAMILY SSF82784 1 138 1.7E-40 T 13-10-2018 IPR036102 OsmC/Ohr superfamily BMD_0327 81ff66c6940063f4c5d6abad2760157a 139 Gene3D G3DSA:2.20.25.10 1 44 3.4E-11 T 13-10-2018 BMD_0327 81ff66c6940063f4c5d6abad2760157a 139 Gene3D G3DSA:3.30.300.20 45 139 4.5E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_2536 4a81fb32db3d01c07269f40fb16d5c12 197 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 4 190 8.3E-64 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_2536 4a81fb32db3d01c07269f40fb16d5c12 197 SMART SM01207 7 182 3.0E-79 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_2536 4a81fb32db3d01c07269f40fb16d5c12 197 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 4 190 19.984 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_2536 4a81fb32db3d01c07269f40fb16d5c12 197 Pfam PF02660 Glycerol-3-phosphate acyltransferase 8 181 9.7E-52 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 SMART SM00862 145 222 1.3E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 Gene3D G3DSA:3.40.50.2300 1 127 1.5E-36 T 13-10-2018 BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 221 7.6E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 SMART SM00448 2 113 4.6E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 SUPERFAMILY SSF52172 1 129 9.39E-40 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 Gene3D G3DSA:1.10.10.10 128 225 2.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 SUPERFAMILY SSF46894 120 223 3.83E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_1893 7b593c9b337b9c11a19ed466f34a37c2 226 Pfam PF00072 Response regulator receiver domain 4 113 3.0E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 Pfam PF00085 Thioredoxin 3 103 2.0E-35 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 PIRSF PIRSF000077 1 104 1.3E-44 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 ProSitePatterns PS00194 Thioredoxin family active site. 21 39 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 PRINTS PR00421 Thioredoxin family signature 28 37 4.8E-10 T 13-10-2018 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 PRINTS PR00421 Thioredoxin family signature 20 28 4.8E-10 T 13-10-2018 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 PRINTS PR00421 Thioredoxin family signature 68 79 4.8E-10 T 13-10-2018 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 103 3.1E-42 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 Gene3D G3DSA:3.40.30.10 1 104 2.4E-38 T 13-10-2018 BMD_4715 84531c835d12fb469a178e341c01ee5d 104 SUPERFAMILY SSF52833 3 103 2.01E-40 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 SUPERFAMILY SSF52540 326 571 5.44E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 SMART SM00382 361 547 4.6E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 Gene3D G3DSA:3.40.50.300 322 572 1.7E-83 T 13-10-2018 BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 Pfam PF00005 ABC transporter 352 501 2.7E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 Gene3D G3DSA:1.20.1560.10 1 316 8.5E-91 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 SUPERFAMILY SSF90123 5 320 2.09E-74 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_0906 91e3203f9938543c25183ff8ff1670eb 580 Pfam PF00664 ABC transporter transmembrane region 20 287 1.9E-47 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_1759 c2856c501b3af491947c1f246c75c5af 139 PIRSF PIRSF029598 1 139 7.0E-42 T 13-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 BMD_1759 c2856c501b3af491947c1f246c75c5af 139 Pfam PF06146 Phosphate-starvation-inducible E 59 124 1.7E-17 T 13-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 Pfam PF00245 Alkaline phosphatase 41 462 1.0E-90 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 SUPERFAMILY SSF53649 30 471 4.06E-113 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 Pfam PF07833 Copper amine oxidase N-terminal domain 473 540 4.3E-5 T 13-10-2018 IPR012854 Copper amine oxidase-like, N-terminal BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 PRINTS PR00113 Alkaline phosphatase signature 259 288 2.4E-30 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 PRINTS PR00113 Alkaline phosphatase signature 182 192 2.4E-30 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 PRINTS PR00113 Alkaline phosphatase signature 138 158 2.4E-30 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 PRINTS PR00113 Alkaline phosphatase signature 40 60 2.4E-30 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 Gene3D G3DSA:1.10.1200.140 380 439 9.2E-128 T 13-10-2018 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 SMART SM00098 41 465 5.9E-87 T 13-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 BMD_1205 eb31e8bdb004a0945231f4a46e741c61 551 Gene3D G3DSA:3.40.720.10 41 441 9.2E-128 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_4038 d802e81cd2cfb85ba5b75ac3fdba86e1 296 SUPERFAMILY SSF52266 58 265 1.55E-38 T 13-10-2018 BMD_4038 d802e81cd2cfb85ba5b75ac3fdba86e1 296 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 62 254 4.3E-30 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain BMD_4038 d802e81cd2cfb85ba5b75ac3fdba86e1 296 Gene3D G3DSA:3.40.50.1110 28 267 1.1E-37 T 13-10-2018 IPR036514 SGNH hydrolase superfamily BMD_3954 a84d500dff06b9da2bc2a8ffe860ddf0 148 SUPERFAMILY SSF55729 2 135 7.58E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3954 a84d500dff06b9da2bc2a8ffe860ddf0 148 Gene3D G3DSA:3.40.630.30 1 133 2.6E-24 T 13-10-2018 BMD_3954 a84d500dff06b9da2bc2a8ffe860ddf0 148 Pfam PF00583 Acetyltransferase (GNAT) family 29 133 2.0E-16 T 13-10-2018 IPR000182 GNAT domain BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 557 47.015 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 Pfam PF00920 Dehydratase family 34 553 2.8E-225 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 SUPERFAMILY SSF52016 377 556 3.14E-62 T 13-10-2018 BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 SUPERFAMILY SSF143975 4 376 4.18E-139 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 Gene3D G3DSA:3.50.30.80 377 528 1.2E-53 T 13-10-2018 BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 17 557 2.3E-262 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BMD_2497 6aa3fba5e7a22f8494bc186f70ea6e24 558 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 465 476 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BMD_2362 68f538017c3ec3a729a54c85f3561297 466 Pfam PF13520 Amino acid permease 26 437 6.2E-66 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2362 68f538017c3ec3a729a54c85f3561297 466 PIRSF PIRSF006060 6 465 4.7E-94 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2362 68f538017c3ec3a729a54c85f3561297 466 Gene3D G3DSA:1.20.1740.10 22 466 1.1E-128 T 13-10-2018 BMD_4074 94c683ea22da0a5e95cc248638151055 76 Gene3D G3DSA:1.10.287.540 1 58 3.8E-23 T 13-10-2018 BMD_4074 94c683ea22da0a5e95cc248638151055 76 SUPERFAMILY SSF158221 1 42 3.14E-14 T 13-10-2018 BMD_4074 94c683ea22da0a5e95cc248638151055 76 Pfam PF05979 Bacterial protein of unknown function (DUF896) 5 68 8.3E-31 T 13-10-2018 IPR009242 Protein of unknown function DUF896 BMD_4074 94c683ea22da0a5e95cc248638151055 76 Hamap MF_01103 UPF0291 protein . 2 60 16.216 T 13-10-2018 IPR009242 Protein of unknown function DUF896 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 13-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.1E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 Pfam PF01165 Ribosomal protein S21 5 57 1.6E-21 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 5 56 5.4E-21 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.633 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 Gene3D G3DSA:1.20.5.1150 16 56 1.7E-18 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4546 970e50f556e85dc543b4c427c809b5dd 57 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 43 9.0E-9 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5105 6ce5b76c360ac951c42292afa8b028c7 281 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 3 279 2.0E-104 T 13-10-2018 IPR003797 DegV BMD_5105 6ce5b76c360ac951c42292afa8b028c7 281 Gene3D G3DSA:3.30.1180.10 154 281 3.6E-45 T 13-10-2018 BMD_5105 6ce5b76c360ac951c42292afa8b028c7 281 Gene3D G3DSA:3.40.50.10170 1 152 3.0E-52 T 13-10-2018 BMD_5105 6ce5b76c360ac951c42292afa8b028c7 281 SUPERFAMILY SSF82549 1 281 6.02E-93 T 13-10-2018 BMD_5105 6ce5b76c360ac951c42292afa8b028c7 281 Pfam PF02645 Uncharacterised protein, DegV family COG1307 2 280 1.2E-98 T 13-10-2018 IPR003797 DegV BMD_3216 d4f6c3e4d4501245ec6ae419ef2e83dd 318 SUPERFAMILY SSF53807 46 302 2.55E-70 T 13-10-2018 BMD_3216 d4f6c3e4d4501245ec6ae419ef2e83dd 318 Gene3D G3DSA:3.40.50.12260 187 292 2.6E-100 T 13-10-2018 BMD_3216 d4f6c3e4d4501245ec6ae419ef2e83dd 318 Pfam PF01497 Periplasmic binding protein 59 292 3.4E-41 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain BMD_3216 d4f6c3e4d4501245ec6ae419ef2e83dd 318 Gene3D G3DSA:3.40.50.1980 50 306 2.6E-100 T 13-10-2018 BMD_0996 a4de298d173a5ebbce0b809e5de1a9dd 178 Pfam PF00990 Diguanylate cyclase, GGDEF domain 5 164 3.0E-50 T 13-10-2018 IPR000160 GGDEF domain BMD_0996 a4de298d173a5ebbce0b809e5de1a9dd 178 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 2 167 1.3E-49 T 13-10-2018 IPR000160 GGDEF domain BMD_0996 a4de298d173a5ebbce0b809e5de1a9dd 178 Gene3D G3DSA:3.30.70.270 1 170 2.2E-52 T 13-10-2018 BMD_0996 a4de298d173a5ebbce0b809e5de1a9dd 178 SMART SM00267 1 168 1.9E-56 T 13-10-2018 IPR000160 GGDEF domain BMD_0996 a4de298d173a5ebbce0b809e5de1a9dd 178 SUPERFAMILY SSF55073 8 169 1.67E-47 T 13-10-2018 IPR029787 Nucleotide cyclase BMD_1757 c83f1086a559a8b3f379125474443040 150 Gene3D G3DSA:3.40.50.720 2 129 1.7E-21 T 13-10-2018 BMD_1757 c83f1086a559a8b3f379125474443040 150 Pfam PF02254 TrkA-N domain 8 130 6.5E-10 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BMD_1757 c83f1086a559a8b3f379125474443040 150 SUPERFAMILY SSF51735 6 141 7.58E-14 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0329 d8434279f634fccd8bdb66bf4ce64c21 387 Pfam PF07687 Peptidase dimerisation domain 191 278 1.6E-16 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_0329 d8434279f634fccd8bdb66bf4ce64c21 387 Pfam PF01546 Peptidase family M20/M25/M40 92 385 2.9E-27 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_0329 d8434279f634fccd8bdb66bf4ce64c21 387 Gene3D G3DSA:3.30.70.360 194 301 7.6E-111 T 13-10-2018 BMD_0329 d8434279f634fccd8bdb66bf4ce64c21 387 SUPERFAMILY SSF53187 12 386 2.62E-46 T 13-10-2018 BMD_0329 d8434279f634fccd8bdb66bf4ce64c21 387 SUPERFAMILY SSF55031 194 297 1.96E-21 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_0329 d8434279f634fccd8bdb66bf4ce64c21 387 PIRSF PIRSF037238 14 387 1.5E-125 T 13-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase BMD_0329 d8434279f634fccd8bdb66bf4ce64c21 387 Gene3D G3DSA:3.40.630.10 35 376 7.6E-111 T 13-10-2018 BMD_4013 cb74662f2d669ad151b5a77105d3b5f6 208 SMART SM00014 86 198 3.9E-21 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_4013 cb74662f2d669ad151b5a77105d3b5f6 208 SUPERFAMILY SSF48317 8 203 1.16E-38 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BMD_4013 cb74662f2d669ad151b5a77105d3b5f6 208 Pfam PF01569 PAP2 superfamily 96 202 2.7E-18 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_4013 cb74662f2d669ad151b5a77105d3b5f6 208 Gene3D G3DSA:1.20.144.10 117 208 3.7E-24 T 13-10-2018 BMD_4013 cb74662f2d669ad151b5a77105d3b5f6 208 Gene3D G3DSA:1.20.144.10 4 116 3.8E-10 T 13-10-2018 BMD_1121 cab17d8b1b8df2e5b5a26e111ead0082 472 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 330 443 2.8E-8 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain BMD_1121 cab17d8b1b8df2e5b5a26e111ead0082 472 Pfam PF01943 Polysaccharide biosynthesis protein 12 273 1.0E-25 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BMD_4309 28778db228472280372d7af13ef3c76c 343 Gene3D G3DSA:3.40.1030.10 74 318 2.4E-117 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_4309 28778db228472280372d7af13ef3c76c 343 Pfam PF00591 Glycosyl transferase family, a/b domain 76 327 1.1E-92 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_4309 28778db228472280372d7af13ef3c76c 343 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 334 2.8E-121 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 BMD_4309 28778db228472280372d7af13ef3c76c 343 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 64 1.2E-17 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_4309 28778db228472280372d7af13ef3c76c 343 Gene3D G3DSA:1.20.970.10 8 185 2.4E-117 T 13-10-2018 BMD_4309 28778db228472280372d7af13ef3c76c 343 SUPERFAMILY SSF52418 74 333 8.11E-86 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_4309 28778db228472280372d7af13ef3c76c 343 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 6 336 37.422 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 BMD_4309 28778db228472280372d7af13ef3c76c 343 SUPERFAMILY SSF47648 4 69 1.7E-17 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_3982 4154c465b334332693c4ae4c6d89de3b 134 PIRSF PIRSF004681 1 133 3.1E-37 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 BMD_3982 4154c465b334332693c4ae4c6d89de3b 134 Gene3D G3DSA:2.60.120.460 1 133 2.0E-53 T 13-10-2018 IPR035917 YjbQ-like superfamily BMD_3982 4154c465b334332693c4ae4c6d89de3b 134 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 5 131 1.3E-54 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 BMD_3982 4154c465b334332693c4ae4c6d89de3b 134 SUPERFAMILY SSF111038 2 131 7.59E-47 T 13-10-2018 IPR035917 YjbQ-like superfamily BMD_3982 4154c465b334332693c4ae4c6d89de3b 134 Pfam PF01894 Uncharacterised protein family UPF0047 17 130 7.6E-40 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 BMD_3982 4154c465b334332693c4ae4c6d89de3b 134 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 95 113 - T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 BMD_1501 bfeb7b979c82e47ca3861b4fef6e59f0 212 Gene3D G3DSA:2.40.30.170 113 210 2.8E-17 T 13-10-2018 BMD_1501 bfeb7b979c82e47ca3861b4fef6e59f0 212 Pfam PF13437 HlyD family secretion protein 87 195 8.5E-14 T 13-10-2018 BMD_1501 bfeb7b979c82e47ca3861b4fef6e59f0 212 SUPERFAMILY SSF51230 39 112 8.11E-13 T 13-10-2018 IPR011053 Single hybrid motif BMD_1501 bfeb7b979c82e47ca3861b4fef6e59f0 212 Gene3D G3DSA:2.40.50.100 45 112 4.5E-13 T 13-10-2018 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 Gene3D G3DSA:3.40.50.620 1 164 1.4E-56 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 SUPERFAMILY SSF52374 4 157 1.75E-42 T 13-10-2018 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.643 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 77 7.0E-4 T 13-10-2018 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 64 1.7E-16 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 1.9E-51 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 1.9E-51 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 1.9E-51 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 1.9E-51 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 1.9E-51 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 158 1.9E-61 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BMD_4287 d99193340e5f40a0814bdc658f8047e2 164 Pfam PF01467 Cytidylyltransferase-like 7 134 6.2E-18 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BMD_0174 6bc6c98d83583d1402e65ff7846f0d74 252 Pfam PF01522 Polysaccharide deacetylase 53 173 2.0E-20 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_0174 6bc6c98d83583d1402e65ff7846f0d74 252 Gene3D G3DSA:3.20.20.370 46 252 2.3E-50 T 13-10-2018 BMD_0174 6bc6c98d83583d1402e65ff7846f0d74 252 TIGRFAM TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB 51 241 6.5E-73 T 13-10-2018 IPR014132 Sporulation polysaccharide deacetylase, PdaB BMD_0174 6bc6c98d83583d1402e65ff7846f0d74 252 SUPERFAMILY SSF88713 14 241 2.1E-46 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_4705 8e460ab372fbd9e8d46ceec77a25828b 166 PIRSF PIRSF005028 1 163 8.2E-56 T 13-10-2018 IPR026278 Potassium/proton antiporter subunit KhtT BMD_4705 8e460ab372fbd9e8d46ceec77a25828b 166 SUPERFAMILY SSF116726 79 158 1.83E-15 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_4705 8e460ab372fbd9e8d46ceec77a25828b 166 Gene3D G3DSA:3.30.70.1450 84 162 1.5E-16 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_4705 8e460ab372fbd9e8d46ceec77a25828b 166 Pfam PF02080 TrkA-C domain 90 159 2.0E-12 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 SMART SM00862 150 224 9.4E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 Gene3D G3DSA:3.40.50.2300 2 130 9.2E-36 T 13-10-2018 BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 SMART SM00448 3 113 7.9E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 SUPERFAMILY SSF46894 131 223 1.87E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 223 1.5E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 SUPERFAMILY SSF52172 2 124 4.41E-39 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 Gene3D G3DSA:1.10.10.10 131 229 3.5E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2921 d06f95e2ec68073636454460cb9dc36a 230 Pfam PF00072 Response regulator receiver domain 5 113 1.5E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Pfam PF02824 TGS domain 6 64 1.2E-14 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Gene3D G3DSA:3.30.54.20 135 191 7.0E-66 T 13-10-2018 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Gene3D G3DSA:3.30.980.10 72 226 7.0E-66 T 13-10-2018 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Pfam PF03129 Anticodon binding domain 551 641 5.8E-24 T 13-10-2018 IPR004154 Anticodon-binding BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 SUPERFAMILY SSF81271 5 64 3.92E-17 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Gene3D G3DSA:3.40.50.800 543 645 6.0E-35 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 75 642 1.5E-242 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 SUPERFAMILY SSF52954 539 642 8.0E-31 T 13-10-2018 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 SUPERFAMILY SSF55186 67 245 5.1E-65 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 335 363 4.8E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 474 502 4.8E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 517 530 4.8E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 368 391 4.8E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 PRINTS PR01047 Threonyl-tRNA synthetase signature 544 556 4.8E-48 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 SMART SM00863 174 223 1.3E-25 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 69 645 35.724 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 328 539 9.0E-35 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Gene3D G3DSA:3.30.930.10 229 542 2.1E-115 T 13-10-2018 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 174 223 1.3E-16 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 Gene3D G3DSA:3.10.20.30 3 65 1.7E-26 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_4739 5060bce0d981d8f65cd204bf46302b1e 645 SUPERFAMILY SSF55681 247 536 7.96E-97 T 13-10-2018 BMD_0668 3e751c59ebd017c74cd9b4080fa11bd6 163 Gene3D G3DSA:3.30.70.990 12 101 2.9E-60 T 13-10-2018 IPR035570 UPF0234, N-terminal BMD_0668 3e751c59ebd017c74cd9b4080fa11bd6 163 Gene3D G3DSA:3.30.70.860 6 163 2.9E-60 T 13-10-2018 IPR035571 UPF0234-like, C-terminal BMD_0668 3e751c59ebd017c74cd9b4080fa11bd6 163 Pfam PF04461 Protein of unknown function (DUF520) 5 163 6.9E-61 T 13-10-2018 IPR007551 Protein of unknown function DUF520 BMD_0668 3e751c59ebd017c74cd9b4080fa11bd6 163 SUPERFAMILY SSF89963 92 163 1.96E-25 T 13-10-2018 IPR036183 YajQ-like superfamily BMD_0668 3e751c59ebd017c74cd9b4080fa11bd6 163 SUPERFAMILY SSF89963 6 90 2.46E-28 T 13-10-2018 IPR036183 YajQ-like superfamily BMD_0668 3e751c59ebd017c74cd9b4080fa11bd6 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 4 163 26.138 T 13-10-2018 IPR007551 Protein of unknown function DUF520 BMD_3619 b0fb38cf8b1d9e541301f6fc4e53b9db 425 SUPERFAMILY SSF103473 15 407 1.57E-53 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3619 b0fb38cf8b1d9e541301f6fc4e53b9db 425 Gene3D G3DSA:1.20.1250.20 12 203 4.8E-16 T 13-10-2018 BMD_3619 b0fb38cf8b1d9e541301f6fc4e53b9db 425 Pfam PF07690 Major Facilitator Superfamily 32 288 4.6E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3619 b0fb38cf8b1d9e541301f6fc4e53b9db 425 Gene3D G3DSA:1.20.1250.20 221 416 4.8E-26 T 13-10-2018 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 SMART SM00387 301 411 6.0E-35 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 Gene3D G3DSA:3.30.565.10 262 411 4.0E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 Pfam PF00512 His Kinase A (phospho-acceptor) domain 192 256 3.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 SUPERFAMILY SSF55874 247 411 8.12E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 SMART SM00388 190 257 2.4E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 SUPERFAMILY SSF47384 178 256 1.92E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 352 7.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 366 7.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 391 7.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 410 7.5E-16 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 301 411 3.4E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0210 d34723b3735649e7d14c82efad6c0dac 411 Gene3D G3DSA:1.10.287.130 174 258 4.5E-17 T 13-10-2018 BMD_2547 6a9f0b7b8c8a9d02d8f16e1567f4f8b2 49 ProDom PD050103 O SPORE SMALL ACID-SOLUBLE SASP SPORULATION CAPSID COAT K SEQUENCING 3 36 6.0E-11 T 13-10-2018 IPR012613 Small acid-soluble spore protein, SspO GO:0030436|GO:0042601 BMD_2547 6a9f0b7b8c8a9d02d8f16e1567f4f8b2 49 Hamap MF_00665 Small, acid-soluble spore protein O [sspO]. 1 49 20.339 T 13-10-2018 IPR012613 Small acid-soluble spore protein, SspO GO:0030436|GO:0042601 BMD_2547 6a9f0b7b8c8a9d02d8f16e1567f4f8b2 49 TIGRFAM TIGR02864 spore_sspO: small, acid-soluble spore protein O 1 49 6.8E-26 T 13-10-2018 IPR012613 Small acid-soluble spore protein, SspO GO:0030436|GO:0042601 BMD_2547 6a9f0b7b8c8a9d02d8f16e1567f4f8b2 49 Pfam PF08175 Small acid-soluble spore protein O family 2 49 1.6E-24 T 13-10-2018 BMD_0724 3a5ca431ee1a5eadcaac608e2d765929 283 SUPERFAMILY SSF52833 11 215 5.5E-31 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_0724 3a5ca431ee1a5eadcaac608e2d765929 283 Pfam PF13743 Thioredoxin 16 207 4.7E-77 T 13-10-2018 BMD_0724 3a5ca431ee1a5eadcaac608e2d765929 283 Gene3D G3DSA:1.10.472.60 53 177 2.8E-37 T 13-10-2018 BMD_0724 3a5ca431ee1a5eadcaac608e2d765929 283 Gene3D G3DSA:3.40.30.10 18 206 2.8E-37 T 13-10-2018 BMD_0313 807ab52841706ccef8aea48214c25cb0 211 Gene3D G3DSA:1.10.3720.10 1 210 1.9E-51 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0313 807ab52841706ccef8aea48214c25cb0 211 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 102 1.6E-19 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_0313 807ab52841706ccef8aea48214c25cb0 211 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 208 1.8E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0313 807ab52841706ccef8aea48214c25cb0 211 SUPERFAMILY SSF161098 12 193 2.22E-44 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 SMART SM00342 186 270 1.7E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 Pfam PF02311 AraC-like ligand binding domain 24 149 1.9E-23 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 254 3.5E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 270 3.5E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 SUPERFAMILY SSF46689 170 220 2.6E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 223 266 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 Gene3D G3DSA:1.10.10.60 171 219 6.3E-12 T 13-10-2018 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 Gene3D G3DSA:1.10.10.60 220 273 1.7E-17 T 13-10-2018 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 Pfam PF12833 Helix-turn-helix domain 192 271 1.0E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 SUPERFAMILY SSF46689 222 271 6.27E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 Gene3D G3DSA:2.60.120.280 20 155 2.3E-12 T 13-10-2018 BMD_2127 afa66a1a7b23a13697d40611d1ddfbde 275 SUPERFAMILY SSF51215 4 153 2.88E-24 T 13-10-2018 IPR037923 Transcription regulator HTH-like BMD_4763 e166511c815e247324bb294dfda43aa0 204 SMART SM00345 16 75 9.9E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_4763 e166511c815e247324bb294dfda43aa0 204 SUPERFAMILY SSF46785 9 79 2.65E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4763 e166511c815e247324bb294dfda43aa0 204 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_4763 e166511c815e247324bb294dfda43aa0 204 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_4763 e166511c815e247324bb294dfda43aa0 204 Gene3D G3DSA:1.10.10.10 11 133 6.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4763 e166511c815e247324bb294dfda43aa0 204 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 5.1E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_0511 791292e967c331a41f6daa1288998ed7 334 SUPERFAMILY SSF55307 204 319 1.28E-44 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 Gene3D G3DSA:3.30.1330.20 221 330 3.8E-40 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 SMART SM00865 207 324 7.9E-56 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 Gene3D G3DSA:3.40.50.1440 6 220 4.0E-84 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 324 39.107 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BMD_0511 791292e967c331a41f6daa1288998ed7 334 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 173 1.3E-45 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 12 326 4.1E-138 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BMD_0511 791292e967c331a41f6daa1288998ed7 334 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BMD_0511 791292e967c331a41f6daa1288998ed7 334 SMART SM00864 13 205 4.0E-117 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BMD_0511 791292e967c331a41f6daa1288998ed7 334 Pfam PF12327 FtsZ family, C-terminal domain 222 316 2.9E-33 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal BMD_0511 791292e967c331a41f6daa1288998ed7 334 PRINTS PR00423 Cell division protein FtsZ signature 212 233 4.1E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 PRINTS PR00423 Cell division protein FtsZ signature 98 118 4.1E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 PRINTS PR00423 Cell division protein FtsZ signature 189 211 4.1E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 PRINTS PR00423 Cell division protein FtsZ signature 126 147 4.1E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BMD_0511 791292e967c331a41f6daa1288998ed7 334 SUPERFAMILY SSF52490 12 208 2.09E-72 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BMD_2866 943b49abdcbf17246ea55a464f0b0402 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 260 2.2E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2866 943b49abdcbf17246ea55a464f0b0402 268 SUPERFAMILY SSF161098 63 251 9.42E-21 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2866 943b49abdcbf17246ea55a464f0b0402 268 Gene3D G3DSA:1.10.3720.10 59 264 7.0E-18 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 PIRSF PIRSF002599 1 66 2.3E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 PRINTS PR00050 Cold shock protein signature 4 19 4.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 PRINTS PR00050 Cold shock protein signature 24 33 4.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 PRINTS PR00050 Cold shock protein signature 39 57 4.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 SUPERFAMILY SSF50249 1 64 3.62E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 SMART SM00357 3 66 2.2E-31 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 Gene3D G3DSA:2.40.50.140 1 66 1.3E-31 T 13-10-2018 BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 6.6E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1682 580eebdcfe4a8f675acbe9369c9e937c 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_2458 b2a9388bc89e821aba20982234f3c3e4 369 Pfam PF00149 Calcineurin-like phosphoesterase 148 311 5.7E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_2458 b2a9388bc89e821aba20982234f3c3e4 369 Gene3D G3DSA:3.60.21.10 146 335 2.5E-23 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_2458 b2a9388bc89e821aba20982234f3c3e4 369 SUPERFAMILY SSF56300 146 362 8.78E-32 T 13-10-2018 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 482 600 4.2E-44 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 Pfam PF02378 Phosphotransferase system, EIIC 9 293 1.4E-79 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 1 452 1.6E-188 T 13-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 Gene3D G3DSA:3.30.1360.60 382 457 6.0E-23 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 SUPERFAMILY SSF55604 382 456 2.62E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 395 412 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 Gene3D G3DSA:2.70.70.10 467 625 6.1E-58 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_1161 009e83ddcf8066d693983ecf95a60914 625 SUPERFAMILY SSF51261 477 619 6.98E-52 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_1161 009e83ddcf8066d693983ecf95a60914 625 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 542 554 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 Pfam PF00367 phosphotransferase system, EIIB 387 417 4.6E-11 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 351 442 1.3E-16 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BMD_1161 009e83ddcf8066d693983ecf95a60914 625 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 479 600 3.5E-50 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BMD_2149 70f12470d2625929751c1424ede79c94 142 Hamap MF_01512 Metallothiol transferase FosB [fosB]. 1 138 41.602 T 13-10-2018 IPR022858 Metallothiol transferase FosB GO:0016765|GO:0046677 BMD_2149 70f12470d2625929751c1424ede79c94 142 SUPERFAMILY SSF54593 1 130 8.06E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2149 70f12470d2625929751c1424ede79c94 142 Gene3D G3DSA:3.10.180.10 1 135 3.3E-39 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2149 70f12470d2625929751c1424ede79c94 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 116 1.1E-12 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_2437 5bd482818e4fa370fb9a3d832f249888 526 Pfam PF00501 AMP-binding enzyme 19 424 5.4E-84 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_2437 5bd482818e4fa370fb9a3d832f249888 526 ProSitePatterns PS00455 Putative AMP-binding domain signature. 176 187 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_2437 5bd482818e4fa370fb9a3d832f249888 526 SUPERFAMILY SSF56801 13 524 5.63E-144 T 13-10-2018 BMD_2437 5bd482818e4fa370fb9a3d832f249888 526 Gene3D G3DSA:3.30.300.310 420 526 6.5E-30 T 13-10-2018 BMD_2437 5bd482818e4fa370fb9a3d832f249888 526 Gene3D G3DSA:3.40.50.12780 5 417 2.1E-110 T 13-10-2018 BMD_2437 5bd482818e4fa370fb9a3d832f249888 526 Pfam PF13193 AMP-binding enzyme C-terminal domain 433 512 7.9E-22 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.0E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 Gene3D G3DSA:3.40.50.2300 61 301 4.0E-66 T 13-10-2018 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 6.3E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 6.3E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 SUPERFAMILY SSF53822 60 323 5.1E-66 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 Pfam PF13377 Periplasmic binding protein-like domain 164 322 1.5E-28 T 13-10-2018 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 Gene3D G3DSA:3.40.50.2300 154 283 4.0E-66 T 13-10-2018 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 SMART SM00354 1 71 2.4E-35 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 SUPERFAMILY SSF47413 2 59 3.84E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_0921 a68e1c6d3586e30a2a99a19bbe28ff1d 329 Gene3D G3DSA:1.10.260.40 3 59 2.3E-24 T 13-10-2018 BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 344 353 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 SMART SM00382 156 337 1.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 10 433 1.9E-196 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 SUPERFAMILY SSF52540 91 359 6.25E-97 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 TIGRFAM TIGR03497 FliI_clade2: flagellar protein export ATPase FliI 20 432 2.7E-205 T 13-10-2018 IPR022425 Flagellar export ATPase FliI, clade 2 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 144 353 4.8E-77 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 Gene3D G3DSA:3.40.50.12240 12 435 6.3E-154 T 13-10-2018 BMD_4177 d42d2a68078cbcaa48bd1693546c631c 437 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 22 86 1.7E-6 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BMD_0770 df7a4d2517154ee34b59146d012fc106 101 SUPERFAMILY SSF52794 1 100 4.97E-36 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_0770 df7a4d2517154ee34b59146d012fc106 101 TIGRFAM TIGR00853 pts-lac: PTS system, lactose/cellobiose family IIB component 2 94 4.5E-37 T 13-10-2018 IPR013012 Phosphotransferase system, EIIB component, type 3 GO:0008982|GO:0009401 BMD_0770 df7a4d2517154ee34b59146d012fc106 101 Gene3D G3DSA:3.40.50.2300 1 101 5.0E-38 T 13-10-2018 BMD_0770 df7a4d2517154ee34b59146d012fc106 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 93 7.5E-21 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BMD_0809 63c4b53ae0a200a0343a5456a4014414 531 Pfam PF13520 Amino acid permease 9 425 1.1E-46 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0809 63c4b53ae0a200a0343a5456a4014414 531 Gene3D G3DSA:1.20.1740.10 1 461 2.4E-77 T 13-10-2018 BMD_0809 63c4b53ae0a200a0343a5456a4014414 531 PIRSF PIRSF006060 1 531 3.5E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1970 2b43b48d5e49f4f07007ec8e9d953528 188 Pfam PF04542 Sigma-70 region 2 24 91 2.1E-19 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_1970 2b43b48d5e49f4f07007ec8e9d953528 188 SUPERFAMILY SSF88659 99 179 5.98E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_1970 2b43b48d5e49f4f07007ec8e9d953528 188 Gene3D G3DSA:1.10.10.10 97 180 1.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1970 2b43b48d5e49f4f07007ec8e9d953528 188 SUPERFAMILY SSF88946 2 107 1.88E-28 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_1970 2b43b48d5e49f4f07007ec8e9d953528 188 Gene3D G3DSA:1.10.1740.10 7 88 1.2E-26 T 13-10-2018 BMD_1970 2b43b48d5e49f4f07007ec8e9d953528 188 Pfam PF04545 Sigma-70, region 4 128 175 3.3E-11 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BMD_1970 2b43b48d5e49f4f07007ec8e9d953528 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 178 2.0E-33 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_3742 380c6a79d4135bac9ad5bd99bf6e34a9 93 Pfam PF14145 YrhK-like protein 25 79 2.5E-22 T 13-10-2018 IPR025424 YrhK domain BMD_3742 380c6a79d4135bac9ad5bd99bf6e34a9 93 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 14 92 8.0E-26 T 13-10-2018 BMD_2746 13f6d8b74429314ab565fec9ca8ad460 297 SUPERFAMILY SSF53474 6 287 2.34E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2746 13f6d8b74429314ab565fec9ca8ad460 297 Pfam PF00561 alpha/beta hydrolase fold 33 140 1.9E-7 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2746 13f6d8b74429314ab565fec9ca8ad460 297 Gene3D G3DSA:3.40.50.1820 15 289 1.3E-45 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1000 8f2da7c72eacd36b39de6d7f4d87c777 196 Gene3D G3DSA:1.10.10.60 5 57 5.6E-19 T 13-10-2018 BMD_1000 8f2da7c72eacd36b39de6d7f4d87c777 196 SUPERFAMILY SSF46689 6 75 4.41E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1000 8f2da7c72eacd36b39de6d7f4d87c777 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 54 3.1E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1000 8f2da7c72eacd36b39de6d7f4d87c777 196 Gene3D G3DSA:1.10.357.10 58 193 2.5E-29 T 13-10-2018 BMD_1000 8f2da7c72eacd36b39de6d7f4d87c777 196 SUPERFAMILY SSF48498 79 195 1.26E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_1000 8f2da7c72eacd36b39de6d7f4d87c777 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1000 8f2da7c72eacd36b39de6d7f4d87c777 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0863 5f16840a7eaf1290db3bef3d3b02c834 495 SUPERFAMILY SSF53720 7 484 4.84E-176 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_0863 5f16840a7eaf1290db3bef3d3b02c834 495 Gene3D G3DSA:3.40.605.10 22 475 7.5E-190 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_0863 5f16840a7eaf1290db3bef3d3b02c834 495 Pfam PF00171 Aldehyde dehydrogenase family 21 481 7.9E-183 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_0863 5f16840a7eaf1290db3bef3d3b02c834 495 PIRSF PIRSF036492 26 489 2.5E-86 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 BMD_0863 5f16840a7eaf1290db3bef3d3b02c834 495 Gene3D G3DSA:3.40.309.10 258 451 7.5E-190 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_0863 5f16840a7eaf1290db3bef3d3b02c834 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_1307 252e0b895097751d6500c193195dc8ed 78 Pfam PF08796 Protein of unknown function (DUF1797) 7 77 1.9E-25 T 13-10-2018 IPR014904 Protein of unknown function DUF1797 BMD_1307 252e0b895097751d6500c193195dc8ed 78 SUPERFAMILY SSF143567 2 77 7.85E-26 T 13-10-2018 IPR038073 YkuJ-like superfamily BMD_1307 252e0b895097751d6500c193195dc8ed 78 PIRSF PIRSF037356 1 78 1.3E-30 T 13-10-2018 IPR014904 Protein of unknown function DUF1797 BMD_1307 252e0b895097751d6500c193195dc8ed 78 Gene3D G3DSA:3.30.720.20 1 78 2.8E-30 T 13-10-2018 IPR038073 YkuJ-like superfamily BMD_1375 470cd3f6211efe445cf29d67ceba617d 265 Gene3D G3DSA:3.60.15.10 33 265 3.9E-15 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_1375 470cd3f6211efe445cf29d67ceba617d 265 SUPERFAMILY SSF56281 35 224 2.54E-8 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 SUPERFAMILY SSF51703 29 547 9.81E-217 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 Pfam PF02310 B12 binding domain 587 697 4.0E-16 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 Pfam PF01642 Methylmalonyl-CoA mutase 32 545 3.4E-236 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 Gene3D G3DSA:3.20.20.240 31 547 1.3E-237 T 13-10-2018 BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 584 714 1.5E-60 T 13-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 SUPERFAMILY SSF52242 552 713 5.36E-58 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 31 551 3.3E-271 T 13-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_4421 eef1f29c84a4985b8920e23cd8488947 716 Gene3D G3DSA:3.40.50.280 551 714 2.9E-53 T 13-10-2018 BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 4.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 4.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 4.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 Gene3D G3DSA:3.40.50.720 1 254 1.7E-76 T 13-10-2018 BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 8.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 8.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 8.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 8.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 8.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 8.3E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 251 6.1E-54 T 13-10-2018 BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 SUPERFAMILY SSF51735 9 251 2.47E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3423 8686cbd3d613a6aa77df0e0368c5c4a7 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_4375 0fcbee29d424d4c73071db21f236ad12 141 Pfam PF13782 Stage V sporulation protein AB 28 136 4.5E-34 T 13-10-2018 IPR020144 Stage V sporulation protein AB BMD_4375 0fcbee29d424d4c73071db21f236ad12 141 ProDom PD086170 SPORULATION AB V STAGE MEMBRANE SPOVAB TRANSMEMBRANE 28 140 1.0E-32 T 13-10-2018 IPR020144 Stage V sporulation protein AB BMD_1570 de910cc54346f8c3209af8fbd726ef60 125 Gene3D G3DSA:3.40.50.510 1 119 2.1E-28 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BMD_1570 de910cc54346f8c3209af8fbd726ef60 125 Pfam PF03610 PTS system fructose IIA component 1 92 2.5E-23 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BMD_1570 de910cc54346f8c3209af8fbd726ef60 125 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 1 93 7.2E-37 T 13-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 BMD_1570 de910cc54346f8c3209af8fbd726ef60 125 SUPERFAMILY SSF53062 1 110 2.49E-26 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BMD_5124 88f35fd492b84d569a020c4fea235380 273 SUPERFAMILY SSF117143 93 233 6.02E-13 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BMD_5124 88f35fd492b84d569a020c4fea235380 273 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 192 269 5.6E-16 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BMD_5124 88f35fd492b84d569a020c4fea235380 273 Pfam PF00460 Flagella basal body rod protein 7 35 1.6E-7 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BMD_5124 88f35fd492b84d569a020c4fea235380 273 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 143 3.4E-25 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BMD_4467 404d3cd17344cf2b0eaee9905d80520e 277 Hamap MF_02118 Octanoyltransferase LipM [lipM]. 2 277 68.433 T 13-10-2018 IPR024898 Octanoyltransferase LipM GO:0009107|GO:0009249|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BMD_4467 404d3cd17344cf2b0eaee9905d80520e 277 Pfam PF03099 Biotin/lipoate A/B protein ligase family 51 188 1.9E-28 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BMD_4467 404d3cd17344cf2b0eaee9905d80520e 277 SUPERFAMILY SSF55681 4 277 2.9E-74 T 13-10-2018 BMD_4467 404d3cd17344cf2b0eaee9905d80520e 277 Gene3D G3DSA:3.30.930.10 3 277 5.4E-74 T 13-10-2018 BMD_2607 f362794e83d21a2148104043636a0e15 126 Gene3D G3DSA:3.40.30.10 9 107 1.9E-26 T 13-10-2018 BMD_2607 f362794e83d21a2148104043636a0e15 126 SUPERFAMILY SSF52833 10 105 4.03E-25 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_2607 f362794e83d21a2148104043636a0e15 126 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 10 86 1.0E-10 T 13-10-2018 BMD_4732 b35d12f4c2cd1bf9af5235fb07752d95 361 Pfam PF05343 M42 glutamyl aminopeptidase 48 342 5.9E-116 T 13-10-2018 IPR008007 Peptidase M42 BMD_4732 b35d12f4c2cd1bf9af5235fb07752d95 361 PIRSF PIRSF001123 4 361 1.9E-148 T 13-10-2018 IPR008007 Peptidase M42 BMD_4732 b35d12f4c2cd1bf9af5235fb07752d95 361 SUPERFAMILY SSF53187 6 358 2.77E-71 T 13-10-2018 BMD_4732 b35d12f4c2cd1bf9af5235fb07752d95 361 Gene3D G3DSA:3.40.630.10 12 345 4.1E-135 T 13-10-2018 BMD_4732 b35d12f4c2cd1bf9af5235fb07752d95 361 SUPERFAMILY SSF101821 73 182 1.48E-33 T 13-10-2018 BMD_4732 b35d12f4c2cd1bf9af5235fb07752d95 361 Gene3D G3DSA:2.40.30.40 77 164 4.1E-135 T 13-10-2018 IPR023367 Peptidase M42, domain 2 BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 Pfam PF03466 LysR substrate binding domain 128 287 1.2E-20 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 7.9E-14 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 Gene3D G3DSA:3.40.190.290 105 291 1.8E-14 T 13-10-2018 BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 Gene3D G3DSA:1.10.10.10 2 91 4.6E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 SUPERFAMILY SSF53850 105 287 5.25E-20 T 13-10-2018 BMD_0972 43b2346b60d4f88f11f9a41fef2d8b6a 292 SUPERFAMILY SSF46785 1 79 8.06E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_5121 7f97523bbc45b42f4b2ed2734c0c242c 120 Pfam PF00436 Single-strand binding protein family 2 103 6.0E-29 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 BMD_5121 7f97523bbc45b42f4b2ed2734c0c242c 120 PIRSF PIRSF002070 1 120 2.3E-27 T 13-10-2018 BMD_5121 7f97523bbc45b42f4b2ed2734c0c242c 120 SUPERFAMILY SSF50249 1 109 4.41E-35 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_5121 7f97523bbc45b42f4b2ed2734c0c242c 120 Gene3D G3DSA:2.40.50.140 1 110 1.8E-37 T 13-10-2018 BMD_5121 7f97523bbc45b42f4b2ed2734c0c242c 120 Hamap MF_00984 Single-stranded DNA-binding protein. 2 107 27.438 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BMD_5121 7f97523bbc45b42f4b2ed2734c0c242c 120 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 106 5.7E-30 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BMD_2564 8dd825f759eb9b4cc479db118a55e11a 157 SUPERFAMILY SSF49764 31 146 8.72E-20 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_2564 8dd825f759eb9b4cc479db118a55e11a 157 Gene3D G3DSA:2.60.40.790 22 157 7.8E-21 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_2564 8dd825f759eb9b4cc479db118a55e11a 157 Pfam PF00011 Hsp20/alpha crystallin family 61 150 1.1E-11 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 SMART SM00240 26 79 1.3E-6 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 SMART SM00862 140 218 8.2E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 217 2.0E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 Gene3D G3DSA:1.10.10.10 121 225 1.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 Gene3D G3DSA:2.60.200.20 4 106 4.5E-20 T 13-10-2018 BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 SUPERFAMILY SSF49879 14 101 9.18E-20 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 SUPERFAMILY SSF46894 127 219 1.08E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_3067 33a588da36b332cf28a759c0dbbb1d20 226 Pfam PF00498 FHA domain 27 95 1.2E-15 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 BMD_3400 f779f94a2178584c6cbbc39376c1fd18 642 PIRSF PIRSF000906 1 642 0.0 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 BMD_3400 f779f94a2178584c6cbbc39376c1fd18 642 Pfam PF06874 Firmicute fructose-1,6-bisphosphatase 4 639 4.2E-286 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 BMD_3400 f779f94a2178584c6cbbc39376c1fd18 642 Hamap MF_01854 Fructose-1,6-bisphosphatase class 3 [fbp]. 2 642 38.825 T 13-10-2018 IPR009164 Fructose-1,6-bisphosphatase class 3 GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 BMD_3400 f779f94a2178584c6cbbc39376c1fd18 642 SUPERFAMILY SSF56300 173 557 7.72E-11 T 13-10-2018 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Gene3D G3DSA:1.10.246.80 339 397 2.9E-20 T 13-10-2018 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Gene3D G3DSA:1.20.58.560 241 338 2.2E-19 T 13-10-2018 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Pfam PF01743 Poly A polymerase head domain 22 142 3.0E-39 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Hamap MF_01263 CCA-adding enzyme [cca]. 2 395 39.703 T 13-10-2018 IPR023068 CCA-adding enzyme, firmicutes GO:0001680|GO:0004810|GO:0016437 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Gene3D G3DSA:1.10.110.30 145 240 4.4E-30 T 13-10-2018 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Pfam PF13735 tRNA nucleotidyltransferase domain 2 putative 245 391 3.1E-34 T 13-10-2018 IPR032810 CCA-adding enzyme, C-terminal BMD_1369 075165bf379c477331eff2da4ca1a3de 397 SUPERFAMILY SSF81301 8 138 1.09E-44 T 13-10-2018 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 170 228 9.0E-14 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 Gene3D G3DSA:3.30.460.10 3 144 3.4E-56 T 13-10-2018 BMD_1369 075165bf379c477331eff2da4ca1a3de 397 SUPERFAMILY SSF81891 140 394 4.32E-51 T 13-10-2018 BMD_3546 a19ffce9987f5ec3d11c69f9a4e9b227 170 Gene3D G3DSA:1.10.10.10 87 170 1.5E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3546 a19ffce9987f5ec3d11c69f9a4e9b227 170 SUPERFAMILY SSF88659 116 170 6.17E-10 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_3546 a19ffce9987f5ec3d11c69f9a4e9b227 170 Pfam PF04542 Sigma-70 region 2 21 87 1.0E-11 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3546 a19ffce9987f5ec3d11c69f9a4e9b227 170 SUPERFAMILY SSF88946 2 99 5.23E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3546 a19ffce9987f5ec3d11c69f9a4e9b227 170 Gene3D G3DSA:1.10.1740.10 4 86 1.6E-14 T 13-10-2018 BMD_3546 a19ffce9987f5ec3d11c69f9a4e9b227 170 Pfam PF08281 Sigma-70, region 4 114 165 1.8E-9 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_3546 a19ffce9987f5ec3d11c69f9a4e9b227 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 166 3.0E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_1826 f2d2e4f72ea5d0fd73de49ef7da8b872 65 SUPERFAMILY SSF51430 5 63 5.5E-22 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1826 f2d2e4f72ea5d0fd73de49ef7da8b872 65 Gene3D G3DSA:3.20.20.100 1 64 1.5E-27 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1826 f2d2e4f72ea5d0fd73de49ef7da8b872 65 Pfam PF00248 Aldo/keto reductase family 3 63 1.6E-19 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_5047 b68cbdc6e088c1440df92ba6ed58da09 328 Hamap MF_00973 Gluconeogenesis factor. 5 319 36.309 T 13-10-2018 IPR010119 Gluconeogenesis factor BMD_5047 b68cbdc6e088c1440df92ba6ed58da09 328 Pfam PF01933 Uncharacterised protein family UPF0052 9 294 2.1E-110 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 BMD_5047 b68cbdc6e088c1440df92ba6ed58da09 328 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 9 317 2.4E-128 T 13-10-2018 IPR010119 Gluconeogenesis factor BMD_5047 b68cbdc6e088c1440df92ba6ed58da09 328 Gene3D G3DSA:3.40.50.12300 4 323 4.9E-133 T 13-10-2018 IPR038136 Gluconeogenesis factor superfamily BMD_5047 b68cbdc6e088c1440df92ba6ed58da09 328 SUPERFAMILY SSF142338 7 314 4.71E-109 T 13-10-2018 BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 PIRSF PIRSF000331 1 491 1.3E-165 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 SUPERFAMILY SSF47203 264 481 7.53E-52 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 SUPERFAMILY SSF56645 3 274 4.23E-80 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 Gene3D G3DSA:2.40.110.10 146 274 1.4E-45 T 13-10-2018 BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 5 273 6.6E-94 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 280 480 7.4E-55 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 Gene3D G3DSA:1.10.3140.10 2 145 3.8E-46 T 13-10-2018 BMD_3581 80d42d909cd483a29f6bf31b91310da7 492 Gene3D G3DSA:1.20.140.10 276 491 4.3E-67 T 13-10-2018 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 326 453 1.6E-24 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 SUPERFAMILY SSF53738 306 457 1.92E-32 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 SUPERFAMILY SSF55957 446 579 2.22E-15 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 SUPERFAMILY SSF53738 30 238 1.22E-47 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Gene3D G3DSA:3.40.120.10 327 454 1.7E-37 T 13-10-2018 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 509 562 1.1E-11 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 42 179 4.9E-44 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 318 1.1E-24 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Gene3D G3DSA:3.40.120.10 209 326 1.6E-23 T 13-10-2018 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Gene3D G3DSA:3.40.120.10 33 189 9.5E-50 T 13-10-2018 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 298 313 2.1E-8 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 139 153 2.1E-8 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 231 250 2.1E-8 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 Gene3D G3DSA:3.30.310.50 472 570 6.8E-11 T 13-10-2018 BMD_0536 7cb052196e93a4f69612a63e6617cb09 584 SUPERFAMILY SSF53738 208 317 3.92E-21 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_4954 7526b71ca9f8c9262fd6ff26be5c2010 121 Gene3D G3DSA:2.60.300.12 5 113 4.5E-36 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_4954 7526b71ca9f8c9262fd6ff26be5c2010 121 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 6 110 1.4E-37 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 BMD_4954 7526b71ca9f8c9262fd6ff26be5c2010 121 SUPERFAMILY SSF89360 4 97 1.84E-30 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_4954 7526b71ca9f8c9262fd6ff26be5c2010 121 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 92 109 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 BMD_4954 7526b71ca9f8c9262fd6ff26be5c2010 121 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 106 1.1E-21 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 147 333 3.0E-48 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 Pfam PF08673 Phosphoserine phosphatase RsbU, N-terminal domain 11 83 4.5E-31 T 13-10-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 SUPERFAMILY SSF101215 3 83 1.37E-25 T 13-10-2018 IPR017944 KaiA/RbsU helical domain superfamily GO:0006468 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 SMART SM00331 119 334 2.5E-57 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 ProDom PD685490 RSBU REGULATOR SIGMA REGULATION FACTOR B PHOSPHATASE SIGMAB INDIRECT SIGMA-B 11 91 3.0E-22 T 13-10-2018 IPR014787 Phosphoserine phosphatase RsbU, N-terminal KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 SUPERFAMILY SSF81606 125 332 2.22E-8 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 Gene3D G3DSA:3.60.40.10 86 334 1.2E-53 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0226 d4078cdc4e32f10b1ef1f725e108eee6 336 Gene3D G3DSA:1.10.1240.30 1 84 1.3E-27 T 13-10-2018 IPR017944 KaiA/RbsU helical domain superfamily GO:0006468 BMD_4680 630f7593b3b455fdfd73baecffda6602 196 SUPERFAMILY SSF52016 1 191 6.28E-59 T 13-10-2018 BMD_4680 630f7593b3b455fdfd73baecffda6602 196 Gene3D G3DSA:3.20.19.10 1 174 4.7E-72 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BMD_4680 630f7593b3b455fdfd73baecffda6602 196 Pfam PF00694 Aconitase C-terminal domain 1 123 2.4E-36 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 BMD_4680 630f7593b3b455fdfd73baecffda6602 196 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 196 39.871 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 BMD_4680 630f7593b3b455fdfd73baecffda6602 196 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 186 5.2E-79 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 BMD_0574 524a21cc71ba73061c49ea11d7224183 537 Pfam PF13193 AMP-binding enzyme C-terminal domain 444 520 7.3E-18 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_0574 524a21cc71ba73061c49ea11d7224183 537 SUPERFAMILY SSF56801 7 533 2.35E-131 T 13-10-2018 BMD_0574 524a21cc71ba73061c49ea11d7224183 537 Gene3D G3DSA:3.40.50.12780 1 429 1.0E-113 T 13-10-2018 BMD_0574 524a21cc71ba73061c49ea11d7224183 537 Gene3D G3DSA:3.30.300.310 430 536 1.7E-31 T 13-10-2018 BMD_0574 524a21cc71ba73061c49ea11d7224183 537 Pfam PF00501 AMP-binding enzyme 21 434 8.9E-93 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_3876 98d4f77d466696d3b8303b61efa5d2a2 473 SUPERFAMILY SSF53448 250 405 1.02E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3876 98d4f77d466696d3b8303b61efa5d2a2 473 Gene3D G3DSA:3.90.550.10 239 461 7.8E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3876 98d4f77d466696d3b8303b61efa5d2a2 473 Gene3D G3DSA:3.90.550.10 1 215 8.1E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3876 98d4f77d466696d3b8303b61efa5d2a2 473 Pfam PF00535 Glycosyl transferase family 2 5 122 1.5E-18 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_3876 98d4f77d466696d3b8303b61efa5d2a2 473 Pfam PF00535 Glycosyl transferase family 2 252 355 2.8E-17 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_3876 98d4f77d466696d3b8303b61efa5d2a2 473 SUPERFAMILY SSF53448 1 119 6.4E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2256 82889cdc9314cf7bfe08daa5792b2982 310 SUPERFAMILY SSF53474 49 307 3.04E-74 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2256 82889cdc9314cf7bfe08daa5792b2982 310 Pfam PF07859 alpha/beta hydrolase fold 76 283 2.1E-77 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 BMD_2256 82889cdc9314cf7bfe08daa5792b2982 310 Gene3D G3DSA:3.40.50.1820 1 307 8.5E-102 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0670 0f742247239f015f24746ab364cf7155 43 Pfam PF13081 Domain of unknown function (DUF3941) 19 41 7.0E-8 T 13-10-2018 IPR025077 Protein of unknown function DUF3941 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 295 1.4E-109 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 SUPERFAMILY SSF53850 2 218 4.34E-81 T 13-10-2018 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 292 2.6E-17 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 230 246 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 Gene3D G3DSA:3.30.160.40 220 304 2.8E-30 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 Gene3D G3DSA:3.40.190.10 4 209 2.7E-84 T 13-10-2018 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 211 1.2E-80 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 Gene3D G3DSA:3.40.190.10 101 201 2.7E-84 T 13-10-2018 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 5.7E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 PRINTS PR00151 Porphobilinogen deaminase signature 229 246 5.7E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 5.7E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 5.7E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 5.7E-47 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 PIRSF PIRSF001438 1 310 3.2E-121 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 SUPERFAMILY SSF54782 219 308 1.7E-21 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_4670 8c5c2c28e61be9015c5039d309fd6b18 310 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 39.104 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BMD_1947 f6dc23003af3da1b4a5e4ca0a3c0a9b3 210 Pfam PF14005 YpjP-like protein 79 208 5.4E-59 T 13-10-2018 IPR025616 YpjP-like protein BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 40 51 1.4E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 117 136 1.4E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 191 7.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 136 7.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 155 7.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 40 51 7.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 Gene3D G3DSA:3.40.50.720 1 218 7.3E-55 T 13-10-2018 BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 SUPERFAMILY SSF51735 3 207 1.05E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2704 9c1293edfcaffb55da6417b307b002dc 220 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 207 4.6E-42 T 13-10-2018 BMD_4650 eb94c2e3a1b6c0fe28104b4b96b152f7 260 Gene3D G3DSA:2.70.70.10 128 258 3.8E-22 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_4650 eb94c2e3a1b6c0fe28104b4b96b152f7 260 Pfam PF01551 Peptidase family M23 159 253 3.9E-18 T 13-10-2018 IPR016047 Peptidase M23 BMD_4650 eb94c2e3a1b6c0fe28104b4b96b152f7 260 SUPERFAMILY SSF51261 103 256 2.51E-19 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_0606 4a5d161d2f7ebbe1013fd71c36177cd4 429 Gene3D G3DSA:3.40.190.10 60 364 1.1E-94 T 13-10-2018 BMD_0606 4a5d161d2f7ebbe1013fd71c36177cd4 429 Pfam PF13416 Bacterial extracellular solute-binding protein 60 363 1.6E-51 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_0606 4a5d161d2f7ebbe1013fd71c36177cd4 429 SUPERFAMILY SSF53850 21 427 2.21E-72 T 13-10-2018 BMD_0606 4a5d161d2f7ebbe1013fd71c36177cd4 429 Gene3D G3DSA:3.40.190.10 147 418 1.1E-94 T 13-10-2018 BMD_0606 4a5d161d2f7ebbe1013fd71c36177cd4 429 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 146 163 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 BMD_4071 abc21edd2176f294f280fd72b85e4560 70 ProDom PD048972 UPF0154 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED FAMILY YNEF SUPERFAMILY MG335.1 EXPORTED MYCGA5700 5 39 6.0E-12 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 BMD_4071 abc21edd2176f294f280fd72b85e4560 70 Hamap MF_00363 UPF0154 protein . 2 70 19.855 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 BMD_4071 abc21edd2176f294f280fd72b85e4560 70 Pfam PF03672 Uncharacterised protein family (UPF0154) 9 66 6.2E-30 T 13-10-2018 IPR005359 Protein with unknown function UPF0154 BMD_5039 eeb75f01a84acc8693542abd01ef10d6 342 Pfam PF04198 Putative sugar-binding domain 90 338 3.4E-69 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 BMD_5039 eeb75f01a84acc8693542abd01ef10d6 342 Gene3D G3DSA:3.40.50.1360 90 340 9.2E-82 T 13-10-2018 BMD_5039 eeb75f01a84acc8693542abd01ef10d6 342 SUPERFAMILY SSF46785 19 84 8.71E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_5039 eeb75f01a84acc8693542abd01ef10d6 342 Gene3D G3DSA:1.10.10.10 18 89 1.5E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5039 eeb75f01a84acc8693542abd01ef10d6 342 SUPERFAMILY SSF100950 91 338 3.45E-68 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_0280 0acbeea79c686921aafe57a31975922b 192 SUPERFAMILY SSF53328 3 187 1.7E-61 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_0280 0acbeea79c686921aafe57a31975922b 192 Pfam PF00551 Formyl transferase 3 182 7.8E-62 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_0280 0acbeea79c686921aafe57a31975922b 192 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_0280 0acbeea79c686921aafe57a31975922b 192 Gene3D G3DSA:3.40.50.170 1 192 2.2E-76 T 13-10-2018 BMD_0280 0acbeea79c686921aafe57a31975922b 192 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 189 8.4E-74 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 BMD_0280 0acbeea79c686921aafe57a31975922b 192 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 31.732 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 BMD_2368 d1202d22d728d236e1e0e9cc4f43d1cf 328 SUPERFAMILY SSF53697 11 328 1.95E-60 T 13-10-2018 BMD_2368 d1202d22d728d236e1e0e9cc4f43d1cf 328 PIRSF PIRSF009290 1 328 8.0E-96 T 13-10-2018 IPR024713 Fructosamine deglycase FrlB BMD_2368 d1202d22d728d236e1e0e9cc4f43d1cf 328 Gene3D G3DSA:1.10.10.2240 159 310 9.9E-66 T 13-10-2018 BMD_2368 d1202d22d728d236e1e0e9cc4f43d1cf 328 Gene3D G3DSA:3.40.50.12570 193 286 9.9E-66 T 13-10-2018 BMD_2368 d1202d22d728d236e1e0e9cc4f43d1cf 328 Gene3D G3DSA:3.40.50.10490 1 155 3.3E-45 T 13-10-2018 BMD_2368 d1202d22d728d236e1e0e9cc4f43d1cf 328 Pfam PF01380 SIS domain 24 130 2.9E-14 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0119 cddf7c081a1ae542b96df0f12f533b7c 59 Gene3D G3DSA:1.20.5.1030 1 58 6.9E-19 T 13-10-2018 IPR038379 SecE superfamily BMD_0119 cddf7c081a1ae542b96df0f12f533b7c 59 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 6 58 1.7E-23 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BMD_0119 cddf7c081a1ae542b96df0f12f533b7c 59 Hamap MF_00422 Protein translocase subunit SecE [secE]. 2 57 13.019 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0119 cddf7c081a1ae542b96df0f12f533b7c 59 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 6 58 1.1E-20 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_0119 cddf7c081a1ae542b96df0f12f533b7c 59 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 7 35 - T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BMD_5190 0c71f241faecb57ddf21989c8c5e2f97 140 Gene3D G3DSA:1.10.10.2520 8 92 7.3E-12 T 13-10-2018 BMD_5190 0c71f241faecb57ddf21989c8c5e2f97 140 Pfam PF07486 Cell Wall Hydrolase 25 129 1.7E-18 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_5204 af5ab7b0cebec2406651c7172579f83c 545 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 482 499 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_5204 af5ab7b0cebec2406651c7172579f83c 545 SUPERFAMILY SSF55604 469 544 9.29E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_5204 af5ab7b0cebec2406651c7172579f83c 545 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 438 529 9.3E-19 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BMD_5204 af5ab7b0cebec2406651c7172579f83c 545 TIGRFAM TIGR02003 PTS-II-BC-unk1: PTS system, IIBC component 3 545 6.8E-288 T 13-10-2018 IPR011300 Phosphotransferase system, IIBC component KEGG: 00010+2.7.1.199|KEGG: 00520+2.7.1.199 BMD_5204 af5ab7b0cebec2406651c7172579f83c 545 Gene3D G3DSA:3.30.1360.60 465 544 9.0E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_5204 af5ab7b0cebec2406651c7172579f83c 545 Pfam PF02378 Phosphotransferase system, EIIC 14 378 4.4E-57 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_5204 af5ab7b0cebec2406651c7172579f83c 545 Pfam PF00367 phosphotransferase system, EIIB 473 503 5.7E-13 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_1847 039cecdbd53ab3620c1913c2634c97c2 222 Gene3D G3DSA:3.20.20.70 1 222 3.5E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1847 039cecdbd53ab3620c1913c2634c97c2 222 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 218 4.5E-56 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_1847 039cecdbd53ab3620c1913c2634c97c2 222 SUPERFAMILY SSF51569 1 220 8.37E-73 T 13-10-2018 BMD_1847 039cecdbd53ab3620c1913c2634c97c2 222 ProSitePatterns PS00958 Transaldolase active site. 87 104 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_1847 039cecdbd53ab3620c1913c2634c97c2 222 Hamap MF_00494 Probable transaldolase [tal]. 1 221 44.54 T 13-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_1847 039cecdbd53ab3620c1913c2634c97c2 222 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 219 1.1E-81 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_1847 039cecdbd53ab3620c1913c2634c97c2 222 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 SUPERFAMILY SSF50249 2 136 7.43E-50 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 137 1.2E-67 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 PIRSF PIRSF002133 1 137 2.1E-50 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 Gene3D G3DSA:2.40.50.140 1 140 2.0E-62 T 13-10-2018 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 PRINTS PR01034 Ribosomal protein S12 signature 107 123 7.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 PRINTS PR01034 Ribosomal protein S12 signature 55 70 7.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 PRINTS PR01034 Ribosomal protein S12 signature 123 135 7.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 PRINTS PR01034 Ribosomal protein S12 signature 71 90 7.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 PRINTS PR01034 Ribosomal protein S12 signature 40 55 7.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 PRINTS PR01034 Ribosomal protein S12 signature 90 107 7.2E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 Pfam PF00164 Ribosomal protein S12/S23 32 136 5.8E-39 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 136 40.591 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0129 d05e6ed89b474d1cdd7054d2c73eaf65 140 ProSitePatterns PS00055 Ribosomal protein S12 signature. 56 63 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 8.6E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 Pfam PF00155 Aminotransferase class I and II 117 463 4.5E-36 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 Gene3D G3DSA:1.10.10.10 2 75 6.8E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 SMART SM00345 15 74 4.8E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.3E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.3E-7 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 SUPERFAMILY SSF53383 109 475 2.85E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 Gene3D G3DSA:3.90.1150.10 116 473 6.2E-105 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 SUPERFAMILY SSF46785 6 82 6.32E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2406 f7d5ba1eedb557129e9fdd87f8c9339d 477 Gene3D G3DSA:3.40.640.10 150 369 6.2E-105 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 Gene3D G3DSA:3.20.20.70 2 305 3.4E-97 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 4 302 1.5E-124 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 SUPERFAMILY SSF51395 2 302 5.5E-88 T 13-10-2018 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 4 301 41.304 T 13-10-2018 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 Pfam PF01180 Dihydroorotate dehydrogenase 3 286 9.4E-94 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 PIRSF PIRSF000164 1 303 9.2E-86 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 40 59 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 BMD_4238 46de6c8642c15a0b82225a59b52d1363 313 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 239 259 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 BMD_4594 363879f60b4476e5a819eb8dccf1a1d8 94 Hamap MF_01448 UPF0473 protein . 4 91 22.649 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 BMD_4594 363879f60b4476e5a819eb8dccf1a1d8 94 Pfam PF06949 Protein of unknown function (DUF1292) 13 90 1.6E-18 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 BMD_1742 4f0bd855a2b805cd5d171d3d25cef163 171 Pfam PF05163 DinB family 1 166 1.5E-38 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB BMD_1742 4f0bd855a2b805cd5d171d3d25cef163 171 SUPERFAMILY SSF109854 7 163 8.42E-30 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_1742 4f0bd855a2b805cd5d171d3d25cef163 171 Gene3D G3DSA:1.20.120.450 2 165 1.1E-44 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2556 2279bf99b31e5b17b99cc347d3ecce4b 159 Gene3D G3DSA:3.10.20.30 2 83 1.9E-28 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_2556 2279bf99b31e5b17b99cc347d3ecce4b 159 Pfam PF01799 [2Fe-2S] binding domain 81 150 7.9E-26 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 BMD_2556 2279bf99b31e5b17b99cc347d3ecce4b 159 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 71 6.6E-6 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BMD_2556 2279bf99b31e5b17b99cc347d3ecce4b 159 Gene3D G3DSA:1.10.150.120 84 158 5.3E-26 T 13-10-2018 BMD_2556 2279bf99b31e5b17b99cc347d3ecce4b 159 SUPERFAMILY SSF47741 81 155 2.49E-28 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily BMD_2556 2279bf99b31e5b17b99cc347d3ecce4b 159 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 47 55 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 BMD_2556 2279bf99b31e5b17b99cc347d3ecce4b 159 SUPERFAMILY SSF54292 8 86 4.46E-22 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BMD_3911 3f3bf4a331be0e9a90b4a5740d5ff06b 172 SUPERFAMILY SSF52218 1 171 5.95E-50 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3911 3f3bf4a331be0e9a90b4a5740d5ff06b 172 Gene3D G3DSA:3.40.50.360 1 172 4.4E-57 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3911 3f3bf4a331be0e9a90b4a5740d5ff06b 172 Pfam PF02525 Flavodoxin-like fold 1 170 5.8E-49 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_0571 4c40a059c0902ef3f4ff599be5595905 292 Gene3D G3DSA:3.30.1240.10 84 198 3.6E-71 T 13-10-2018 BMD_0571 4c40a059c0902ef3f4ff599be5595905 292 Pfam PF08282 haloacid dehalogenase-like hydrolase 7 269 6.0E-48 T 13-10-2018 BMD_0571 4c40a059c0902ef3f4ff599be5595905 292 SUPERFAMILY SSF56784 1 275 5.65E-53 T 13-10-2018 IPR036412 HAD-like superfamily BMD_0571 4c40a059c0902ef3f4ff599be5595905 292 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 243 6.4E-12 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_0571 4c40a059c0902ef3f4ff599be5595905 292 Gene3D G3DSA:3.40.50.1000 5 267 3.6E-71 T 13-10-2018 IPR023214 HAD superfamily BMD_4098 8ace22702bfd6c107571efd7eda88e21 143 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 9 113 8.8E-23 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA BMD_4098 8ace22702bfd6c107571efd7eda88e21 143 PIRSF PIRSF021287 1 123 7.2E-51 T 13-10-2018 IPR016783 Biofilm formation YmcA BMD_4098 8ace22702bfd6c107571efd7eda88e21 143 SUPERFAMILY SSF158622 4 123 8.24E-35 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily BMD_4098 8ace22702bfd6c107571efd7eda88e21 143 Gene3D G3DSA:1.20.1500.10 1 124 5.1E-35 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily BMD_0052 ebdc1a78cdfb39e9c4c17f699286ba34 95 Pfam PF01541 GIY-YIG catalytic domain 6 74 2.3E-16 T 13-10-2018 IPR000305 GIY-YIG endonuclease BMD_0052 ebdc1a78cdfb39e9c4c17f699286ba34 95 SUPERFAMILY SSF82771 6 74 3.92E-14 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_0052 ebdc1a78cdfb39e9c4c17f699286ba34 95 Gene3D G3DSA:3.40.1440.10 1 95 1.2E-31 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_2665 bbd252bfb93545c99be6f759feb10959 125 TIGRFAM TIGR01741 staph_tand_hypo: conserved hypothetical protein 2 120 1.3E-27 T 13-10-2018 IPR006728 Protein of unknown function DUF600 BMD_2665 bbd252bfb93545c99be6f759feb10959 125 SUPERFAMILY SSF160424 1 122 7.19E-37 T 13-10-2018 IPR036170 Probable antitoxin YezG superfamily BMD_2665 bbd252bfb93545c99be6f759feb10959 125 Gene3D G3DSA:3.30.500.20 1 116 5.0E-41 T 13-10-2018 BMD_2665 bbd252bfb93545c99be6f759feb10959 125 Pfam PF04634 Protein of unknown function, DUF600 5 120 9.7E-38 T 13-10-2018 IPR006728 Protein of unknown function DUF600 BMD_3786 2ab3ef5abdd1708f371910986f4d4bb0 536 Pfam PF01943 Polysaccharide biosynthesis protein 5 319 1.1E-37 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BMD_3786 2ab3ef5abdd1708f371910986f4d4bb0 536 PIRSF PIRSF038958 1 535 8.1E-116 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type BMD_3786 2ab3ef5abdd1708f371910986f4d4bb0 536 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 374 522 1.6E-24 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 465 5.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 484 5.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 426 5.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 440 5.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 Gene3D G3DSA:1.10.287.130 250 331 6.7E-19 T 13-10-2018 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 Gene3D G3DSA:1.20.1480.50 154 249 2.6E-6 T 13-10-2018 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 Pfam PF00512 His Kinase A (phospho-acceptor) domain 266 329 5.3E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 SUPERFAMILY SSF55874 321 485 3.8E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 Gene3D G3DSA:3.30.565.10 336 489 6.9E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 SUPERFAMILY SSF47384 252 329 5.49E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 SMART SM00387 375 487 3.3E-35 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 SMART SM00388 265 331 7.4E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_2920 6d2740523cb5e6d2291278cc8572f8cf 489 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 376 486 6.4E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 Pfam PF13404 AsnC-type helix-turn-helix domain 3 44 8.7E-16 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 SMART SM00344 3 109 1.7E-38 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 SUPERFAMILY SSF54909 64 137 2.95E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 2.3E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 2.3E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 2.3E-15 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 Gene3D G3DSA:3.30.70.920 52 140 3.9E-20 T 13-10-2018 BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 Gene3D G3DSA:1.10.10.10 1 50 6.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 SUPERFAMILY SSF46785 2 61 4.4E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3897 10e81b355a265dc3e637fc1d4dfd90b9 151 Pfam PF01037 Lrp/AsnC ligand binding domain 69 135 8.6E-9 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BMD_1298 cb74ce970f25b18b8c49ea6ca3030aad 170 SUPERFAMILY SSF54106 2 46 8.11E-10 T 13-10-2018 BMD_1298 cb74ce970f25b18b8c49ea6ca3030aad 170 SMART SM00257 2 46 3.0E-10 T 13-10-2018 IPR018392 LysM domain BMD_1298 cb74ce970f25b18b8c49ea6ca3030aad 170 Gene3D G3DSA:2.40.440.10 51 163 3.0E-40 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_1298 cb74ce970f25b18b8c49ea6ca3030aad 170 Pfam PF01476 LysM domain 3 46 2.9E-11 T 13-10-2018 IPR018392 LysM domain BMD_1298 cb74ce970f25b18b8c49ea6ca3030aad 170 Pfam PF03734 L,D-transpeptidase catalytic domain 56 162 1.7E-15 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BMD_1298 cb74ce970f25b18b8c49ea6ca3030aad 170 SUPERFAMILY SSF141523 55 163 4.71E-31 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_1298 cb74ce970f25b18b8c49ea6ca3030aad 170 Gene3D G3DSA:3.10.350.10 1 50 1.8E-11 T 13-10-2018 IPR036779 LysM domain superfamily BMD_4981 c58b4ee990ccfa4638906f4e2fda3c62 127 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 51 100 4.0E-8 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BMD_4981 c58b4ee990ccfa4638906f4e2fda3c62 127 SUPERFAMILY SSF69118 7 122 5.37E-27 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_4981 c58b4ee990ccfa4638906f4e2fda3c62 127 Gene3D G3DSA:1.20.1290.10 5 123 1.1E-28 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_4981 c58b4ee990ccfa4638906f4e2fda3c62 127 Pfam PF02627 Carboxymuconolactone decarboxylase family 34 116 5.6E-20 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 279 35.988 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 PIRSF PIRSF010376 2 286 1.7E-97 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 Gene3D G3DSA:3.30.70.890 162 286 9.9E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 SUPERFAMILY SSF54211 3 157 4.71E-48 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3 287 4.0E-113 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 SUPERFAMILY SSF55060 161 281 1.93E-31 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 Pfam PF00288 GHMP kinases N terminal domain 87 144 1.8E-11 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 Gene3D G3DSA:3.30.230.10 1 158 8.5E-60 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_0063 575d0b7dc0f710274b0f0cc269653f35 289 Pfam PF08544 GHMP kinases C terminal 197 270 5.2E-8 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain BMD_1513 96f9e8eaa2d5ced58df90fd1cdf7624a 414 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 394 1.2E-122 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 BMD_1513 96f9e8eaa2d5ced58df90fd1cdf7624a 414 Pfam PF07690 Major Facilitator Superfamily 19 362 5.5E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1513 96f9e8eaa2d5ced58df90fd1cdf7624a 414 Gene3D G3DSA:1.20.1720.10 13 393 5.5E-95 T 13-10-2018 BMD_1513 96f9e8eaa2d5ced58df90fd1cdf7624a 414 SUPERFAMILY SSF103473 5 403 4.97E-60 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 PIRSF PIRSF000726 1 65 4.4E-9 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 PIRSF PIRSF000726 60 410 5.2E-91 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 SUPERFAMILY SSF53633 2 247 2.23E-68 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 Gene3D G3DSA:3.30.2130.10 257 409 2.3E-34 T 13-10-2018 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 Pfam PF00696 Amino acid kinase family 2 235 2.0E-48 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 64 401 2.1E-92 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 Pfam PF13840 ACT domain 338 398 1.3E-20 T 13-10-2018 IPR027795 CASTOR, ACT domain BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 403 1.6E-138 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 SUPERFAMILY SSF55021 261 347 4.2E-15 T 13-10-2018 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 SUPERFAMILY SSF55021 335 404 6.87E-16 T 13-10-2018 BMD_4125 dacb37fc8a17ea18010b79b0f7d4b026 410 Gene3D G3DSA:3.40.1160.10 1 256 2.7E-84 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_3585 1ee3ffd3eb153144446d89cc7a88a208 127 SMART SM00422 5 74 4.3E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3585 1ee3ffd3eb153144446d89cc7a88a208 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 2.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3585 1ee3ffd3eb153144446d89cc7a88a208 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 2.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3585 1ee3ffd3eb153144446d89cc7a88a208 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 2.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3585 1ee3ffd3eb153144446d89cc7a88a208 127 SUPERFAMILY SSF46955 5 121 1.32E-30 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_3585 1ee3ffd3eb153144446d89cc7a88a208 127 Pfam PF13411 MerR HTH family regulatory protein 5 64 5.3E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3585 1ee3ffd3eb153144446d89cc7a88a208 127 Gene3D G3DSA:1.10.1660.10 5 127 1.8E-32 T 13-10-2018 BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 46 288 7.3E-56 T 13-10-2018 BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 1.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 1.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 206 1.4E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 SUPERFAMILY SSF51735 37 288 6.16E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 Gene3D G3DSA:3.40.50.720 26 291 4.3E-73 T 13-10-2018 BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 115 126 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 225 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 206 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 252 272 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 40 57 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1290 1f4760035de0fb0b286a8b9b3e6e5811 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 177 9.3E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5182 b2b6c999dbce9a00b819e62d41e04ef2 61 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 60 2.5E-27 T 13-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 BMD_5182 b2b6c999dbce9a00b819e62d41e04ef2 61 Pfam PF01361 Tautomerase enzyme 2 60 9.7E-23 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 BMD_5182 b2b6c999dbce9a00b819e62d41e04ef2 61 Gene3D G3DSA:3.30.429.10 1 60 1.4E-27 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_5182 b2b6c999dbce9a00b819e62d41e04ef2 61 SUPERFAMILY SSF55331 2 60 1.83E-19 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_4417 f563f6ba76346a780204b876411bd9cd 223 Gene3D G3DSA:1.10.3720.10 5 223 6.1E-59 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4417 f563f6ba76346a780204b876411bd9cd 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 114 1.3E-31 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_4417 f563f6ba76346a780204b876411bd9cd 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 221 5.9E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_4417 f563f6ba76346a780204b876411bd9cd 223 SUPERFAMILY SSF161098 17 221 5.89E-46 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 SUPERFAMILY SSF144052 4 409 4.84E-156 T 13-10-2018 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 324 345 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 389 408 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 363 385 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 156 178 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 80 99 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 15 32 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 301 321 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 PRINTS PR00919 Thermophilic metalloprotease (M29) signature 245 264 3.6E-77 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 Gene3D G3DSA:3.40.1830.10 1 180 1.1E-71 T 13-10-2018 IPR035097 Peptidase M29, N-terminal BMD_2887 b905fc9d33ed6fc09f864f52aabdbd18 410 Pfam PF02073 Thermophilic metalloprotease (M29) 5 408 1.8E-182 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_4210 9b10a71f8227a59688d1ad50753039af 334 Pfam PF02504 Fatty acid synthesis protein 1 318 5.0E-128 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 BMD_4210 9b10a71f8227a59688d1ad50753039af 334 Gene3D G3DSA:3.40.718.10 1 334 3.3E-140 T 13-10-2018 BMD_4210 9b10a71f8227a59688d1ad50753039af 334 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 333 152.907 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 BMD_4210 9b10a71f8227a59688d1ad50753039af 334 SUPERFAMILY SSF53659 1 328 1.11E-105 T 13-10-2018 BMD_4210 9b10a71f8227a59688d1ad50753039af 334 PIRSF PIRSF002465 1 332 1.4E-131 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 BMD_4210 9b10a71f8227a59688d1ad50753039af 334 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 330 6.1E-139 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 BMD_4986 c31099ab768a974ce9028b3853ffd5a0 116 SMART SM00493 7 81 1.3E-6 T 13-10-2018 IPR006171 TOPRIM domain BMD_4986 c31099ab768a974ce9028b3853ffd5a0 116 Gene3D G3DSA:3.40.1360.20 3 116 1.4E-43 T 13-10-2018 BMD_4986 c31099ab768a974ce9028b3853ffd5a0 116 SUPERFAMILY SSF110455 4 111 1.57E-34 T 13-10-2018 BMD_5115 b8def38b0d5bd219a12644ba72a9d4be 235 Hamap MF_02070 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase. 1 235 57.626 T 13-10-2018 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase GO:0047244 MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 BMD_5115 b8def38b0d5bd219a12644ba72a9d4be 235 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 58 222 1.2E-60 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 BMD_5115 b8def38b0d5bd219a12644ba72a9d4be 235 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 54 228 8.1E-58 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 BMD_3896 84bb59b0b6d287f4d8770dff23fa6998 152 Gene3D G3DSA:1.20.1290.10 42 146 1.1E-11 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_3896 84bb59b0b6d287f4d8770dff23fa6998 152 SUPERFAMILY SSF69118 13 143 1.83E-15 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_0113 befce1e66ea809269cea5772e8500220 465 Gene3D G3DSA:3.40.50.620 1 305 5.8E-136 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_0113 befce1e66ea809269cea5772e8500220 465 Pfam PF09190 DALR domain 354 414 2.3E-16 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 SUPERFAMILY SSF47323 340 464 6.54E-33 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0113 befce1e66ea809269cea5772e8500220 465 Gene3D G3DSA:1.20.120.1910 306 465 1.7E-34 T 13-10-2018 BMD_0113 befce1e66ea809269cea5772e8500220 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 464 2.3E-192 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 SMART SM00840 353 416 3.3E-16 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.2E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 1.2E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.2E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 1.2E-29 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 SUPERFAMILY SSF52374 3 313 4.29E-105 T 13-10-2018 BMD_0113 befce1e66ea809269cea5772e8500220 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 313 5.1E-137 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 BMD_0113 befce1e66ea809269cea5772e8500220 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 465 39.148 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 BMD_2980 16a21711133bd9847b4dde9be06c40f5 237 Pfam PF01553 Acyltransferase 30 156 2.3E-13 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BMD_2980 16a21711133bd9847b4dde9be06c40f5 237 SMART SM00563 42 159 4.6E-14 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BMD_2980 16a21711133bd9847b4dde9be06c40f5 237 SUPERFAMILY SSF69593 14 207 3.01E-20 T 13-10-2018 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 14 447 2.0E-171 T 13-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 Gene3D G3DSA:3.90.1150.10 18 438 1.6E-130 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 Pfam PF00202 Aminotransferase class-III 32 444 7.3E-92 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 PIRSF PIRSF000521 109 447 1.0E-35 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 PIRSF PIRSF000521 4 140 9.9E-4 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 Gene3D G3DSA:3.40.640.10 68 335 1.6E-130 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4054 05d8cb38a3baa48593454d031aa480ed 454 SUPERFAMILY SSF53383 21 445 3.93E-111 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4224 32f82536991262e26e5cd25248be1ad2 363 Gene3D G3DSA:3.20.20.70 80 344 1.3E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4224 32f82536991262e26e5cd25248be1ad2 363 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 14 363 3.2E-162 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 BMD_4224 32f82536991262e26e5cd25248be1ad2 363 PIRSF PIRSF006004 9 363 6.1E-140 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 BMD_4224 32f82536991262e26e5cd25248be1ad2 363 SUPERFAMILY SSF102114 102 318 3.79E-15 T 13-10-2018 BMD_4224 32f82536991262e26e5cd25248be1ad2 363 Pfam PF13394 4Fe-4S single cluster domain 125 230 5.3E-6 T 13-10-2018 BMD_4224 32f82536991262e26e5cd25248be1ad2 363 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 17 359 74.164 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 BMD_4224 32f82536991262e26e5cd25248be1ad2 363 Pfam PF04055 Radical SAM superfamily 120 293 3.0E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_4224 32f82536991262e26e5cd25248be1ad2 363 Gene3D G3DSA:1.10.150.530 1 77 3.0E-21 T 13-10-2018 BMD_2999 ca976d8687adc123026b2a6ea9a9f94e 200 SUPERFAMILY SSF53474 2 197 4.26E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2999 ca976d8687adc123026b2a6ea9a9f94e 200 Pfam PF01738 Dienelactone hydrolase family 79 183 1.7E-10 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 BMD_2999 ca976d8687adc123026b2a6ea9a9f94e 200 Gene3D G3DSA:3.40.50.1820 1 198 1.0E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2475 d85d24346f773b51bd306201d1477866 167 SUPERFAMILY SSF109854 6 156 4.21E-25 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2475 d85d24346f773b51bd306201d1477866 167 Pfam PF05163 DinB family 6 161 1.3E-30 T 13-10-2018 IPR007837 DNA damage-inducible protein DinB BMD_2475 d85d24346f773b51bd306201d1477866 167 Gene3D G3DSA:1.20.120.450 2 162 5.1E-31 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 Pfam PF00750 tRNA synthetases class I (R) 106 400 3.6E-31 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 Gene3D G3DSA:3.40.50.620 124 431 2.9E-180 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 134 143 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 SMART SM01016 5 95 1.8E-36 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 Pfam PF05746 DALR anticodon binding domain 438 556 4.3E-39 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 SUPERFAMILY SSF52374 118 448 7.04E-99 T 13-10-2018 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 SUPERFAMILY SSF47323 431 556 1.05E-36 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 SMART SM00836 437 556 1.3E-54 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 9 94 4.2E-26 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 SUPERFAMILY SSF55190 2 115 5.1E-28 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 Hamap MF_00123 Arginine--tRNA ligase [argS]. 9 556 28.949 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 8 556 1.4E-177 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 Gene3D G3DSA:1.10.730.10 432 556 2.9E-180 T 13-10-2018 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 Gene3D G3DSA:3.30.1360.70 2 113 2.5E-29 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 163 176 6.3E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 306 327 6.3E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 124 139 6.3E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BMD_5175 80615c52ecacfa7c63fe9cb40b4c429f 556 PRINTS PR01038 Arginyl-tRNA synthetase signature 139 155 6.3E-25 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BMD_1187 433cb1d71d8de69699f0900cda0314c4 537 Gene3D G3DSA:3.40.630.10 8 232 9.0E-39 T 13-10-2018 BMD_1187 433cb1d71d8de69699f0900cda0314c4 537 Pfam PF01546 Peptidase family M20/M25/M40 112 492 1.6E-12 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_1187 433cb1d71d8de69699f0900cda0314c4 537 SUPERFAMILY SSF53187 11 519 1.94E-32 T 13-10-2018 BMD_1187 433cb1d71d8de69699f0900cda0314c4 537 PIRSF PIRSF010386 3 536 8.0E-200 T 13-10-2018 IPR012166 Uncharacterised protein family RocB BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 Gene3D G3DSA:2.120.10.30 1 284 1.8E-89 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 SUPERFAMILY SSF63829 9 282 2.39E-58 T 13-10-2018 BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 15 256 1.2E-73 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 90 111 2.4E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 131 153 2.4E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 154 174 2.4E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 14 31 2.4E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 194 211 2.4E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BMD_2380 d85650813ad644d7c9f6418f6bb2c18d 285 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 237 255 2.4E-36 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) BMD_0365 57d53584df7909dcc20b94e9285d6ea5 149 Pfam PF02082 Transcriptional regulator 1 82 3.9E-26 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_0365 57d53584df7909dcc20b94e9285d6ea5 149 Gene3D G3DSA:1.10.10.10 1 142 6.7E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0365 57d53584df7909dcc20b94e9285d6ea5 149 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site BMD_0365 57d53584df7909dcc20b94e9285d6ea5 149 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 5.6E-40 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_0365 57d53584df7909dcc20b94e9285d6ea5 149 SUPERFAMILY SSF46785 2 136 3.76E-39 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1178 136f202c6e59d7824cf3ad320cd5b623 111 Pfam PF06305 Lipopolysaccharide assembly protein A domain 24 85 7.5E-17 T 13-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 BMD_2250 c5f11f3e2aff7199c044874dad9985bc 99 ProDom PD068665 YXCD 1 77 7.0E-25 T 13-10-2018 IPR020516 Uncharacterised protein family YxcD BMD_2250 c5f11f3e2aff7199c044874dad9985bc 99 Pfam PF10850 Protein of unknown function (DUF2653) 1 88 5.8E-39 T 13-10-2018 IPR020516 Uncharacterised protein family YxcD BMD_3885 df1e0842a9ae1ffed49ab2b5b14fe0dd 167 Gene3D G3DSA:1.10.1740.10 2 82 5.9E-18 T 13-10-2018 BMD_3885 df1e0842a9ae1ffed49ab2b5b14fe0dd 167 SUPERFAMILY SSF88946 13 93 6.28E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3885 df1e0842a9ae1ffed49ab2b5b14fe0dd 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 159 1.3E-24 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_3885 df1e0842a9ae1ffed49ab2b5b14fe0dd 167 Pfam PF08281 Sigma-70, region 4 106 154 5.4E-14 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_3885 df1e0842a9ae1ffed49ab2b5b14fe0dd 167 Pfam PF04542 Sigma-70 region 2 15 81 7.9E-13 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_3885 df1e0842a9ae1ffed49ab2b5b14fe0dd 167 SUPERFAMILY SSF88659 99 160 4.11E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_3885 df1e0842a9ae1ffed49ab2b5b14fe0dd 167 Gene3D G3DSA:1.10.10.10 98 162 1.3E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2505 6c54a45ba820fdfe274e8452d9935f32 440 TIGRFAM TIGR03173 pbuX: xanthine permease 13 419 2.4E-165 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 BMD_2505 6c54a45ba820fdfe274e8452d9935f32 440 Pfam PF00860 Permease family 11 387 1.4E-122 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_2505 6c54a45ba820fdfe274e8452d9935f32 440 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 334 354 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BMD_2505 6c54a45ba820fdfe274e8452d9935f32 440 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 9 416 5.0E-142 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BMD_0262 983baa7deb36df095e5ed60db014c2ee 316 SUPERFAMILY SSF52540 14 291 2.65E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0262 983baa7deb36df095e5ed60db014c2ee 316 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 41 171 3.0E-63 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 BMD_0262 983baa7deb36df095e5ed60db014c2ee 316 PIRSF PIRSF002849 2 315 3.9E-131 T 13-10-2018 BMD_0262 983baa7deb36df095e5ed60db014c2ee 316 Gene3D G3DSA:1.10.8.300 206 309 7.8E-32 T 13-10-2018 BMD_0262 983baa7deb36df095e5ed60db014c2ee 316 Gene3D G3DSA:3.40.50.300 2 205 2.2E-47 T 13-10-2018 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 PIRSF PIRSF000429 1 395 5.0E-127 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 Gene3D G3DSA:3.40.47.10 4 277 6.1E-149 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 4 392 3.7E-140 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 SUPERFAMILY SSF53901 272 393 8.87E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 Pfam PF02803 Thiolase, C-terminal domain 272 393 1.8E-48 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 Gene3D G3DSA:3.40.47.10 124 391 6.1E-149 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 SUPERFAMILY SSF53901 2 271 1.25E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2333 1dff6e4dd60bfa502fdd1e002004976b 396 Pfam PF00108 Thiolase, N-terminal domain 3 264 1.0E-74 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BMD_3536 141e00633ab577288b489e32846347f3 467 Pfam PF07664 Ferrous iron transport protein B C terminus 253 300 1.7E-12 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 BMD_3536 141e00633ab577288b489e32846347f3 467 Pfam PF07670 Nucleoside recognition 310 434 7.5E-19 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_3536 141e00633ab577288b489e32846347f3 467 Pfam PF07670 Nucleoside recognition 140 228 2.0E-9 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_2729 ecb52a0103df3ca4ead65f4da90315de 309 Gene3D G3DSA:1.10.4080.10 2 309 7.5E-86 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily BMD_2729 ecb52a0103df3ca4ead65f4da90315de 309 Pfam PF03747 ADP-ribosylglycohydrolase 11 287 8.4E-65 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 BMD_2729 ecb52a0103df3ca4ead65f4da90315de 309 SUPERFAMILY SSF101478 2 307 1.83E-68 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily BMD_2848 18134e0468583f99290941e1ab9db35d 223 SUPERFAMILY SSF54593 3 118 3.86E-11 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2848 18134e0468583f99290941e1ab9db35d 223 Gene3D G3DSA:3.10.180.10 2 223 1.9E-62 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 Gene3D G3DSA:3.40.50.300 27 249 3.6E-49 T 13-10-2018 BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 SMART SM00490 307 394 5.0E-14 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 SMART SM00487 56 260 5.1E-36 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 SUPERFAMILY SSF52540 71 402 2.16E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 Pfam PF09369 Domain of unknown function (DUF1998) 655 733 2.3E-21 T 13-10-2018 IPR018973 DEAD/DEAH-box helicase, putative BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 Pfam PF00270 DEAD/DEAH box helicase 63 234 2.6E-28 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 Pfam PF00271 Helicase conserved C-terminal domain 291 393 1.9E-13 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_1409 b678fd7b66e16743b7c0fba14e57da07 756 Gene3D G3DSA:3.40.50.300 274 430 1.7E-20 T 13-10-2018 BMD_5097 36d9e17c83939e6b698e820d6551cd31 140 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 17 140 24.373 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 BMD_5097 36d9e17c83939e6b698e820d6551cd31 140 Gene3D G3DSA:2.30.290.10 1 140 1.9E-50 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily BMD_5097 36d9e17c83939e6b698e820d6551cd31 140 Pfam PF02623 FliW protein 19 138 3.2E-37 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 BMD_5097 36d9e17c83939e6b698e820d6551cd31 140 SUPERFAMILY SSF141457 1 139 4.18E-45 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily BMD_3200 75227e2c8eeee0dfac81ee5cac9bdc56 191 Pfam PF05908 Poly-gamma-glutamate hydrolase 5 175 2.7E-48 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase BMD_3200 75227e2c8eeee0dfac81ee5cac9bdc56 191 Gene3D G3DSA:3.40.630.100 1 191 1.2E-52 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily BMD_0190 c874370e33882693d42d2a07ef28dbaf 520 Gene3D G3DSA:2.170.120.40 232 318 6.9E-18 T 13-10-2018 BMD_0190 c874370e33882693d42d2a07ef28dbaf 520 Gene3D G3DSA:2.170.120.40 144 230 7.1E-11 T 13-10-2018 BMD_0190 c874370e33882693d42d2a07ef28dbaf 520 Gene3D G3DSA:2.170.120.30 41 143 9.8E-24 T 13-10-2018 BMD_0190 c874370e33882693d42d2a07ef28dbaf 520 Gene3D G3DSA:2.170.120.30 328 429 3.5E-17 T 13-10-2018 BMD_0190 c874370e33882693d42d2a07ef28dbaf 520 Pfam PF07949 YbbR-like protein 55 135 5.9E-9 T 13-10-2018 IPR012505 YbbR-like BMD_0190 c874370e33882693d42d2a07ef28dbaf 520 Pfam PF07949 YbbR-like protein 145 227 6.7E-15 T 13-10-2018 IPR012505 YbbR-like BMD_0190 c874370e33882693d42d2a07ef28dbaf 520 Pfam PF07949 YbbR-like protein 236 315 4.6E-13 T 13-10-2018 IPR012505 YbbR-like BMD_1736 db0432bbf4df1c99495a6613633912f3 222 Pfam PF13021 Domain of unknown function (DUF3885) 180 217 3.9E-21 T 13-10-2018 IPR024976 Domain of unknown function DUF3885 BMD_2363 cc6ccc0edcbe9cd02d94fd10a6e035e0 402 Gene3D G3DSA:1.20.1250.20 17 196 4.2E-29 T 13-10-2018 BMD_2363 cc6ccc0edcbe9cd02d94fd10a6e035e0 402 Pfam PF07690 Major Facilitator Superfamily 24 335 4.7E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2363 cc6ccc0edcbe9cd02d94fd10a6e035e0 402 SUPERFAMILY SSF103473 16 398 2.09E-63 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2363 cc6ccc0edcbe9cd02d94fd10a6e035e0 402 Gene3D G3DSA:1.20.1250.20 208 401 6.0E-21 T 13-10-2018 BMD_1755 a51096a478a920d195852cc8f593d48d 261 Gene3D G3DSA:1.10.1660.10 5 141 5.2E-31 T 13-10-2018 BMD_1755 a51096a478a920d195852cc8f593d48d 261 Pfam PF07739 TipAS antibiotic-recognition domain 147 246 1.5E-6 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain BMD_1755 a51096a478a920d195852cc8f593d48d 261 ProSitePatterns PS00552 MerR-type HTH domain signature. 10 32 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1755 a51096a478a920d195852cc8f593d48d 261 SUPERFAMILY SSF46955 7 112 4.4E-25 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_1755 a51096a478a920d195852cc8f593d48d 261 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 8 19 9.0E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1755 a51096a478a920d195852cc8f593d48d 261 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 19 32 9.0E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1755 a51096a478a920d195852cc8f593d48d 261 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 43 63 9.0E-8 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1755 a51096a478a920d195852cc8f593d48d 261 Pfam PF13411 MerR HTH family regulatory protein 7 74 3.6E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1755 a51096a478a920d195852cc8f593d48d 261 SMART SM00422 7 76 6.1E-21 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3881 204c776fd08d01ea20b35224adeb20e6 231 SUPERFAMILY SSF47090 32 98 8.63E-18 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_3881 204c776fd08d01ea20b35224adeb20e6 231 Gene3D G3DSA:3.90.1720.10 106 231 1.6E-45 T 13-10-2018 BMD_3881 204c776fd08d01ea20b35224adeb20e6 231 Pfam PF00877 NlpC/P60 family 124 226 9.9E-32 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_3881 204c776fd08d01ea20b35224adeb20e6 231 Gene3D G3DSA:1.10.101.10 29 105 1.5E-18 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_3881 204c776fd08d01ea20b35224adeb20e6 231 SUPERFAMILY SSF54001 109 228 2.26E-42 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_3881 204c776fd08d01ea20b35224adeb20e6 231 Pfam PF01471 Putative peptidoglycan binding domain 43 98 1.3E-13 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_5076 eac4d1bf438300de4689d17ec8d122c7 296 PIRSF PIRSF003097 2 296 2.9E-86 T 13-10-2018 IPR004513 Cell division protein FtsX GO:0016021 BMD_5076 eac4d1bf438300de4689d17ec8d122c7 296 Gene3D G3DSA:3.30.70.3040 51 157 8.6E-7 T 13-10-2018 BMD_5076 eac4d1bf438300de4689d17ec8d122c7 296 Pfam PF02687 FtsX-like permease family 200 295 3.9E-7 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BMD_0784 3ebe6e0e5b7dc69b8d1ef021acc9a272 469 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 401 1.3E-5 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BMD_0784 3ebe6e0e5b7dc69b8d1ef021acc9a272 469 Gene3D G3DSA:3.90.190.20 317 465 6.9E-24 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_0784 3ebe6e0e5b7dc69b8d1ef021acc9a272 469 SUPERFAMILY SSF53623 103 314 4.06E-47 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_0784 3ebe6e0e5b7dc69b8d1ef021acc9a272 469 SUPERFAMILY SSF53244 320 448 2.35E-18 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_0784 3ebe6e0e5b7dc69b8d1ef021acc9a272 469 Pfam PF08245 Mur ligase middle domain 109 297 1.5E-37 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_0784 3ebe6e0e5b7dc69b8d1ef021acc9a272 469 Gene3D G3DSA:3.40.1190.10 87 314 9.6E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_2147 18d9d657af542a392144480db53e7531 480 SUPERFAMILY SSF46785 6 85 7.03E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2147 18d9d657af542a392144480db53e7531 480 SMART SM00345 17 76 7.2E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2147 18d9d657af542a392144480db53e7531 480 SUPERFAMILY SSF53383 102 479 1.44E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2147 18d9d657af542a392144480db53e7531 480 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 4.9E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2147 18d9d657af542a392144480db53e7531 480 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 4.9E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2147 18d9d657af542a392144480db53e7531 480 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 9.5E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_2147 18d9d657af542a392144480db53e7531 480 Gene3D G3DSA:1.10.10.10 6 76 4.8E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2147 18d9d657af542a392144480db53e7531 480 Gene3D G3DSA:3.40.640.10 153 371 1.6E-103 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_2147 18d9d657af542a392144480db53e7531 480 Pfam PF00155 Aminotransferase class I and II 120 468 1.7E-36 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_2147 18d9d657af542a392144480db53e7531 480 Gene3D G3DSA:3.90.1150.10 108 473 1.6E-103 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 Gene3D G3DSA:3.40.50.620 1 222 2.1E-89 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 Pfam PF00579 tRNA synthetases class I (W and Y) 28 323 2.2E-90 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 SUPERFAMILY SSF52374 1 323 2.06E-107 T 13-10-2018 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 39 49 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 Pfam PF01479 S4 domain 354 399 1.8E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 SMART SM00363 353 414 2.8E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 1.1E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 182 204 1.1E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 216 228 1.1E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 43 65 1.1E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 Gene3D G3DSA:3.10.290.10 326 419 3.0E-35 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 418 1.5E-141 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 SUPERFAMILY SSF55174 321 417 2.09E-24 T 13-10-2018 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 1 418 46.508 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 BMD_4797 e5e3d148eb2646a7279c59cc3e2d2b93 419 Gene3D G3DSA:1.10.240.10 223 325 4.0E-41 T 13-10-2018 BMD_2938 c9076a7610327600127a7a5c638ff5d6 235 SUPERFAMILY SSF52540 4 233 3.0E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2938 c9076a7610327600127a7a5c638ff5d6 235 SMART SM00382 28 230 1.2E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2938 c9076a7610327600127a7a5c638ff5d6 235 PIRSF PIRSF039137 1 235 8.0E-108 T 13-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 BMD_2938 c9076a7610327600127a7a5c638ff5d6 235 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2938 c9076a7610327600127a7a5c638ff5d6 235 Gene3D G3DSA:3.40.50.300 1 235 9.8E-63 T 13-10-2018 BMD_2938 c9076a7610327600127a7a5c638ff5d6 235 Pfam PF00005 ABC transporter 19 164 5.7E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0613 317b8f903ff0ff0d9963d043640de3d1 258 Gene3D G3DSA:1.10.12.10 199 258 2.9E-24 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BMD_0613 317b8f903ff0ff0d9963d043640de3d1 258 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 257 1.9E-63 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_0613 317b8f903ff0ff0d9963d043640de3d1 258 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 99 119 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BMD_0613 317b8f903ff0ff0d9963d043640de3d1 258 SUPERFAMILY SSF52096 2 257 6.88E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_0613 317b8f903ff0ff0d9963d043640de3d1 258 Gene3D G3DSA:3.90.226.10 2 196 9.9E-69 T 13-10-2018 BMD_0949 f41625b61ff1a8f033b6b65b03372679 441 PIRSF PIRSF005353 1 441 3.4E-170 T 13-10-2018 IPR026033 Purine permease PbuG-like BMD_0949 f41625b61ff1a8f033b6b65b03372679 441 Pfam PF00860 Permease family 22 399 1.6E-52 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_4439 5e2e929e2becd730d64971698994c018 149 Gene3D G3DSA:3.30.1360.40 68 149 3.4E-33 T 13-10-2018 BMD_4439 5e2e929e2becd730d64971698994c018 149 SUPERFAMILY SSF46785 5 78 7.54E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4439 5e2e929e2becd730d64971698994c018 149 Gene3D G3DSA:1.10.10.10 4 67 1.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4439 5e2e929e2becd730d64971698994c018 149 TIGRFAM TIGR01529 argR_whole: arginine repressor 5 149 4.6E-55 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BMD_4439 5e2e929e2becd730d64971698994c018 149 Pfam PF02863 Arginine repressor, C-terminal domain 81 145 2.1E-27 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 BMD_4439 5e2e929e2becd730d64971698994c018 149 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 87 149 2.0E-26 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 BMD_4439 5e2e929e2becd730d64971698994c018 149 Hamap MF_00173 Arginine repressor [argR]. 1 149 72.805 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BMD_4439 5e2e929e2becd730d64971698994c018 149 Pfam PF01316 Arginine repressor, DNA binding domain 1 70 1.4E-30 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 BMD_4439 5e2e929e2becd730d64971698994c018 149 SUPERFAMILY SSF55252 80 149 3.01E-23 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 BMD_4439 5e2e929e2becd730d64971698994c018 149 PRINTS PR01467 Bacterial arginine repressor signature 88 101 6.8E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BMD_4439 5e2e929e2becd730d64971698994c018 149 PRINTS PR01467 Bacterial arginine repressor signature 21 34 6.8E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BMD_4439 5e2e929e2becd730d64971698994c018 149 PRINTS PR01467 Bacterial arginine repressor signature 118 133 6.8E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BMD_4439 5e2e929e2becd730d64971698994c018 149 PRINTS PR01467 Bacterial arginine repressor signature 37 52 6.8E-29 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BMD_4272 1a9081a3ef658526d29e5c784349f118 541 PIRSF PIRSF012535 1 539 2.1E-189 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC BMD_4272 1a9081a3ef658526d29e5c784349f118 541 Pfam PF10079 Bacillithiol biosynthesis BshC 1 537 5.5E-165 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC BMD_4272 1a9081a3ef658526d29e5c784349f118 541 Hamap MF_01867 Putative cysteine ligase BshC [bshC]. 1 541 30.206 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC BMD_4272 1a9081a3ef658526d29e5c784349f118 541 TIGRFAM TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC 12 538 4.0E-177 T 13-10-2018 IPR011199 Bacillithiol biosynthesis BshC BMD_5191 3bb8127399cbfaa10b4decac585b1616 159 PIRSF PIRSF038931 1 159 5.2E-55 T 13-10-2018 IPR014099 Spore coat protein GerQ BMD_5191 3bb8127399cbfaa10b4decac585b1616 159 Pfam PF09671 Spore coat protein (Spore_GerQ) 67 142 2.7E-41 T 13-10-2018 IPR014099 Spore coat protein GerQ BMD_5191 3bb8127399cbfaa10b4decac585b1616 159 TIGRFAM TIGR02728 spore_gerQ: spore coat protein GerQ 65 146 1.7E-45 T 13-10-2018 IPR014099 Spore coat protein GerQ BMD_2322 38864d58005a7640ac6f9d71e4479a9f 352 Pfam PF01636 Phosphotransferase enzyme family 36 265 2.8E-39 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase BMD_2322 38864d58005a7640ac6f9d71e4479a9f 352 SUPERFAMILY SSF56112 14 338 9.01E-56 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_2322 38864d58005a7640ac6f9d71e4479a9f 352 Gene3D G3DSA:3.90.1200.10 119 349 1.1E-60 T 13-10-2018 BMD_2322 38864d58005a7640ac6f9d71e4479a9f 352 Gene3D G3DSA:3.30.200.20 12 113 3.5E-27 T 13-10-2018 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 Gene3D G3DSA:1.20.1720.10 19 226 3.5E-37 T 13-10-2018 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 442 3.7E-100 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 21 45 1.2E-7 T 13-10-2018 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 142 166 1.2E-7 T 13-10-2018 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 337 357 1.2E-7 T 13-10-2018 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 PRINTS PR01036 Tetracycline resistance protein TetB signature 81 103 1.2E-7 T 13-10-2018 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 Pfam PF07690 Major Facilitator Superfamily 23 414 2.4E-44 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 Gene3D G3DSA:1.20.1250.20 265 479 3.0E-21 T 13-10-2018 BMD_3685 438a4435a13cfb8b2b77ca4ec6695c34 481 SUPERFAMILY SSF103473 12 475 3.66E-61 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1094 1ae3b9eb881951ddbe030f4187df2bd0 385 SUPERFAMILY SSF56300 62 312 3.15E-39 T 13-10-2018 BMD_1094 1ae3b9eb881951ddbe030f4187df2bd0 385 SMART SM00854 61 300 7.1E-89 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA BMD_1094 1ae3b9eb881951ddbe030f4187df2bd0 385 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 63 300 1.2E-73 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA BMD_1094 1ae3b9eb881951ddbe030f4187df2bd0 385 Gene3D G3DSA:3.60.21.10 112 348 1.7E-10 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_1867 869505c6a77588f933579c4995dcfa1f 300 Pfam PF02628 Cytochrome oxidase assembly protein 51 287 3.2E-33 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 BMD_4880 73d49d78bf23737298548893d0e5bc9c 265 Pfam PF01987 Mitochondrial biogenesis AIM24 8 226 9.2E-68 T 13-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 BMD_4880 73d49d78bf23737298548893d0e5bc9c 265 TIGRFAM TIGR00266 TIGR00266: TIGR00266 family protein 8 228 8.4E-31 T 13-10-2018 IPR002838 Mitochondrial biogenesis protein AIM24 BMD_4880 73d49d78bf23737298548893d0e5bc9c 265 Gene3D G3DSA:3.60.160.10 1 248 1.7E-101 T 13-10-2018 IPR036983 Mitochondrial biogenesis AIM24 superfamily BMD_4880 73d49d78bf23737298548893d0e5bc9c 265 SUPERFAMILY SSF51219 6 243 5.49E-83 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily BMD_4721 076c10bab042aabdecfa5ff3065fc9cc 368 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 14 342 3.9E-15 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BMD_4721 076c10bab042aabdecfa5ff3065fc9cc 368 Gene3D G3DSA:3.20.20.210 6 368 7.6E-125 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_4721 076c10bab042aabdecfa5ff3065fc9cc 368 SUPERFAMILY SSF51726 12 368 5.89E-78 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_2801 0a5e0e44f305ff23ce8069742a2768e3 308 SUPERFAMILY SSF55729 169 285 4.15E-25 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2801 0a5e0e44f305ff23ce8069742a2768e3 308 Gene3D G3DSA:3.40.630.30 150 292 6.0E-27 T 13-10-2018 BMD_2801 0a5e0e44f305ff23ce8069742a2768e3 308 Pfam PF00583 Acetyltransferase (GNAT) family 182 280 1.1E-15 T 13-10-2018 IPR000182 GNAT domain BMD_2801 0a5e0e44f305ff23ce8069742a2768e3 308 Pfam PF01047 MarR family 36 92 4.4E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2801 0a5e0e44f305ff23ce8069742a2768e3 308 Gene3D G3DSA:1.10.10.10 3 148 8.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2801 0a5e0e44f305ff23ce8069742a2768e3 308 SMART SM00347 28 128 2.3E-4 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2801 0a5e0e44f305ff23ce8069742a2768e3 308 SUPERFAMILY SSF46785 14 143 2.25E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SUPERFAMILY SSF55874 561 745 7.47E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Gene3D G3DSA:1.20.1440.210 50 175 1.8E-29 T 13-10-2018 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 728 741 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 687 697 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 669 683 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 PRINTS PR00344 Bacterial sensor protein C-terminal signature 704 722 6.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Gene3D G3DSA:3.40.50.12740 796 916 3.2E-44 T 13-10-2018 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Pfam PF05227 CHASE3 domain 46 179 2.2E-33 T 13-10-2018 IPR007891 CHASE3 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Gene3D G3DSA:3.30.565.10 571 745 3.3E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Pfam PF00512 His Kinase A (phospho-acceptor) domain 505 572 1.7E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SUPERFAMILY SSF52172 794 914 2.13E-39 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SMART SM00065 283 436 3.3E-5 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SMART SM00387 619 744 5.0E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Gene3D G3DSA:3.30.450.40 270 422 1.5E-16 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SUPERFAMILY SSF47384 491 573 1.31E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Gene3D G3DSA:1.20.1480.50 176 269 1.3E-5 T 13-10-2018 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SMART SM00304 212 266 0.008 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SUPERFAMILY SSF55781 257 419 1.49E-23 T 13-10-2018 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SMART SM00448 797 911 6.3E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 SMART SM00388 504 572 6.6E-24 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Pfam PF00072 Response regulator receiver domain 799 909 3.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Gene3D G3DSA:1.10.287.130 466 570 1.2E-25 T 13-10-2018 BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 741 5.7E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1527 af4f0ef1576fffa1e7c73818297ba9ae 917 Pfam PF13185 GAF domain 282 419 2.6E-16 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_2318 96dd5654da03db2626bbea9fb198148c 187 Gene3D G3DSA:1.10.357.10 46 186 4.0E-33 T 13-10-2018 BMD_2318 96dd5654da03db2626bbea9fb198148c 187 SUPERFAMILY SSF48498 75 185 1.67E-21 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_2318 96dd5654da03db2626bbea9fb198148c 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 49 5.4E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2318 96dd5654da03db2626bbea9fb198148c 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 5 18 5.4E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2318 96dd5654da03db2626bbea9fb198148c 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 48 2.0E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2318 96dd5654da03db2626bbea9fb198148c 187 Gene3D G3DSA:1.10.10.60 1 45 1.3E-18 T 13-10-2018 BMD_2318 96dd5654da03db2626bbea9fb198148c 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 17 48 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_2318 96dd5654da03db2626bbea9fb198148c 187 SUPERFAMILY SSF46689 2 67 6.98E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2548 abb0bb524ccd4f047eb9b1cd9811df45 46 Hamap MF_00666 Small, acid-soluble spore protein P [sspP]. 1 46 16.119 T 13-10-2018 IPR012614 Small acid-soluble spore protein, SspP GO:0030435 BMD_2548 abb0bb524ccd4f047eb9b1cd9811df45 46 Pfam PF08179 Small acid-soluble spore protein P family 1 41 7.4E-19 T 13-10-2018 IPR012614 Small acid-soluble spore protein, SspP GO:0030435 BMD_1021 4515aa7aff83c858bdefc1579991e6d7 381 Gene3D G3DSA:3.30.420.40 8 374 5.5E-129 T 13-10-2018 BMD_1021 4515aa7aff83c858bdefc1579991e6d7 381 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 2 378 9.1E-107 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 BMD_1021 4515aa7aff83c858bdefc1579991e6d7 381 SUPERFAMILY SSF53067 1 329 7.92E-21 T 13-10-2018 BMD_1021 4515aa7aff83c858bdefc1579991e6d7 381 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 1 379 37.702 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 BMD_1021 4515aa7aff83c858bdefc1579991e6d7 381 Gene3D G3DSA:3.30.420.40 149 339 5.5E-129 T 13-10-2018 BMD_4394 a4b3804050fb57edd40f6f2897ecd6e3 298 Pfam PF00682 HMGL-like 6 278 1.4E-50 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BMD_4394 a4b3804050fb57edd40f6f2897ecd6e3 298 SUPERFAMILY SSF51569 3 290 1.23E-68 T 13-10-2018 BMD_4394 a4b3804050fb57edd40f6f2897ecd6e3 298 Gene3D G3DSA:3.20.20.70 1 297 2.6E-116 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3868 bb8add6a08f93deb49d2b216739ba179 135 Gene3D G3DSA:2.60.34.30 1 131 7.9E-47 T 13-10-2018 IPR038691 DNA-entry nuclease inhibitor, ComJ superfamily BMD_3868 bb8add6a08f93deb49d2b216739ba179 135 ProDom PD081734 COMPETENCE J NIN DNA-ENTRY MEMBRANE INHIBITOR NUCLEASE 10 133 8.0E-26 T 13-10-2018 IPR020354 Competence, DNA-entry nuclease inhibitor, ComJ BMD_3868 bb8add6a08f93deb49d2b216739ba179 135 Pfam PF11033 Competence protein J (ComJ) 9 133 4.7E-41 T 13-10-2018 IPR020354 Competence, DNA-entry nuclease inhibitor, ComJ BMD_4278 c0b1dc10fd7f7e7518303871a06a678f 156 Gene3D G3DSA:3.40.630.30 1 155 1.4E-51 T 13-10-2018 BMD_4278 c0b1dc10fd7f7e7518303871a06a678f 156 SUPERFAMILY SSF55729 26 142 7.67E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4278 c0b1dc10fd7f7e7518303871a06a678f 156 Hamap MF_00824 Uncharacterized N-acetyltransferase . 2 149 38.796 T 13-10-2018 IPR017274 Putative N-acetyltransferase YlbP BMD_4278 c0b1dc10fd7f7e7518303871a06a678f 156 Pfam PF00583 Acetyltransferase (GNAT) family 34 106 2.5E-6 T 13-10-2018 IPR000182 GNAT domain BMD_4278 c0b1dc10fd7f7e7518303871a06a678f 156 PIRSF PIRSF037732 1 156 5.8E-76 T 13-10-2018 IPR017274 Putative N-acetyltransferase YlbP BMD_0915 713c228bd9a8ecf55521d422e9842d1f 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 1.3E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0915 713c228bd9a8ecf55521d422e9842d1f 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 1.3E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0915 713c228bd9a8ecf55521d422e9842d1f 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 1.3E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0915 713c228bd9a8ecf55521d422e9842d1f 151 Gene3D G3DSA:1.10.10.10 2 150 2.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0915 713c228bd9a8ecf55521d422e9842d1f 151 Pfam PF01047 MarR family 38 96 1.2E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0915 713c228bd9a8ecf55521d422e9842d1f 151 SUPERFAMILY SSF46785 34 145 1.59E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0915 713c228bd9a8ecf55521d422e9842d1f 151 SMART SM00347 31 131 1.1E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1643 290b061b83659c96ac5900868b639894 430 Pfam PF09335 SNARE associated Golgi protein 29 155 3.1E-19 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_1643 290b061b83659c96ac5900868b639894 430 SUPERFAMILY SSF48317 222 420 6.8E-17 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BMD_1643 290b061b83659c96ac5900868b639894 430 SMART SM00014 304 416 0.0052 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_1643 290b061b83659c96ac5900868b639894 430 Pfam PF01569 PAP2 superfamily 337 416 5.6E-11 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_1643 290b061b83659c96ac5900868b639894 430 Gene3D G3DSA:1.20.144.10 327 426 1.5E-14 T 13-10-2018 BMD_4019 ffeff2159e3acbde1ba84d4f476d1deb 56 ProDom PD052277 YOZD 1 53 2.0E-17 T 13-10-2018 BMD_4019 ffeff2159e3acbde1ba84d4f476d1deb 56 Pfam PF14162 YozD-like protein 2 54 2.5E-33 T 13-10-2018 IPR025545 YozD-like protein BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 Gene3D G3DSA:3.10.350.10 86 136 7.2E-16 T 13-10-2018 IPR036779 LysM domain superfamily BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 Gene3D G3DSA:3.10.350.10 20 84 2.3E-15 T 13-10-2018 IPR036779 LysM domain superfamily BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 Pfam PF01476 LysM domain 32 74 5.2E-11 T 13-10-2018 IPR018392 LysM domain BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 Pfam PF01476 LysM domain 90 131 2.9E-11 T 13-10-2018 IPR018392 LysM domain BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 Pfam PF07486 Cell Wall Hydrolase 165 266 3.7E-25 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 Gene3D G3DSA:2.40.10.420 235 268 2.1E-12 T 13-10-2018 BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 SUPERFAMILY SSF54106 89 131 2.22E-10 T 13-10-2018 BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 SMART SM00257 31 74 5.0E-14 T 13-10-2018 IPR018392 LysM domain BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 SMART SM00257 89 132 3.6E-12 T 13-10-2018 IPR018392 LysM domain BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 Gene3D G3DSA:1.10.10.2520 149 232 4.7E-29 T 13-10-2018 BMD_3220 31bab1d22ab43f83f3fab9439731c615 268 SUPERFAMILY SSF54106 31 74 3.4E-10 T 13-10-2018 BMD_2093 7b919c7e7326f714e442a48b7f6097d8 410 SMART SM00422 5 74 0.0022 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_2093 7b919c7e7326f714e442a48b7f6097d8 410 SUPERFAMILY SSF46955 5 83 2.79E-10 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_2093 7b919c7e7326f714e442a48b7f6097d8 410 Pfam PF13411 MerR HTH family regulatory protein 5 72 4.2E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_2093 7b919c7e7326f714e442a48b7f6097d8 410 Gene3D G3DSA:1.10.1660.10 2 73 1.1E-11 T 13-10-2018 BMD_3990 31cfdab21e38b912b0a3827216a6a2a9 122 SMART SM00345 15 74 9.2E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3990 31cfdab21e38b912b0a3827216a6a2a9 122 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 5.8E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3990 31cfdab21e38b912b0a3827216a6a2a9 122 SUPERFAMILY SSF46785 6 85 1.34E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3990 31cfdab21e38b912b0a3827216a6a2a9 122 Gene3D G3DSA:1.10.10.10 8 121 3.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4702 cc42484272ea2cdeac136951b353a240 328 Gene3D G3DSA:3.40.190.10 115 214 1.4E-92 T 13-10-2018 BMD_4702 cc42484272ea2cdeac136951b353a240 328 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 35 322 8.1E-96 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 BMD_4702 cc42484272ea2cdeac136951b353a240 328 Gene3D G3DSA:1.10.8.450 247 279 1.4E-92 T 13-10-2018 BMD_4702 cc42484272ea2cdeac136951b353a240 328 SUPERFAMILY SSF53850 32 257 9.92E-50 T 13-10-2018 BMD_4702 cc42484272ea2cdeac136951b353a240 328 Gene3D G3DSA:3.40.190.10 35 311 1.4E-92 T 13-10-2018 BMD_4702 cc42484272ea2cdeac136951b353a240 328 Pfam PF09084 NMT1/THI5 like 44 254 1.6E-23 T 13-10-2018 IPR015168 SsuA/THI5-like BMD_4702 cc42484272ea2cdeac136951b353a240 328 SMART SM00062 34 269 5.6E-21 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_2084 378e8f0d1baf3a57e9b53b2cd02d8f0f 117 Pfam PF08863 YolD-like protein 15 106 1.7E-11 T 13-10-2018 IPR014962 YolD-like protein BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 Gene3D G3DSA:3.40.50.720 3 253 3.4E-88 T 13-10-2018 BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 2.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.3E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 SUPERFAMILY SSF51735 8 252 1.03E-91 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.2E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.2E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.2E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.2E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.2E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1659 f94a18a349f48907bef4db1fe6313c98 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 251 8.6E-70 T 13-10-2018 BMD_1963 09fc40e95ced6c56e78f0a34f492fb15 266 Pfam PF01541 GIY-YIG catalytic domain 30 89 5.0E-6 T 13-10-2018 IPR000305 GIY-YIG endonuclease BMD_1963 09fc40e95ced6c56e78f0a34f492fb15 266 Gene3D G3DSA:3.40.1440.10 15 115 2.3E-13 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_1963 09fc40e95ced6c56e78f0a34f492fb15 266 SMART SM00465 28 110 5.8E-5 T 13-10-2018 IPR000305 GIY-YIG endonuclease BMD_1963 09fc40e95ced6c56e78f0a34f492fb15 266 SUPERFAMILY SSF82771 28 107 2.88E-9 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 Hamap MF_01974 Methionine aminopeptidase [map]. 1 248 35.503 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 SUPERFAMILY SSF55920 3 246 5.36E-70 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 247 2.0E-89 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 Pfam PF00557 Metallopeptidase family M24 11 238 1.8E-47 T 13-10-2018 IPR000994 Peptidase M24 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 Gene3D G3DSA:3.90.230.10 1 248 1.9E-85 T 13-10-2018 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 189 201 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 66 79 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 157 169 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_1590 e0a57e60a4d4eca0e68afe7375fc649b 248 PRINTS PR00599 Methionine aminopeptidase-1 signature 88 104 1.1E-20 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_0134 c41f66494db80daf5753f9cefec8aeb4 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 206 39.161 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0134 c41f66494db80daf5753f9cefec8aeb4 209 Gene3D G3DSA:2.40.50.620 33 97 1.0E-12 T 13-10-2018 BMD_0134 c41f66494db80daf5753f9cefec8aeb4 209 Gene3D G3DSA:2.40.30.10 133 209 1.6E-17 T 13-10-2018 BMD_0134 c41f66494db80daf5753f9cefec8aeb4 209 SUPERFAMILY SSF50447 2 207 1.15E-80 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_0134 c41f66494db80daf5753f9cefec8aeb4 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 203 2.9E-86 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0134 c41f66494db80daf5753f9cefec8aeb4 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site BMD_0134 c41f66494db80daf5753f9cefec8aeb4 209 Pfam PF00297 Ribosomal protein L3 99 181 2.5E-15 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0902 6a9a11317c5a7e361f20a8dea97a5390 109 Pfam PF01638 HxlR-like helix-turn-helix 16 102 7.8E-39 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_0902 6a9a11317c5a7e361f20a8dea97a5390 109 SMART SM00418 12 92 0.0061 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_0902 6a9a11317c5a7e361f20a8dea97a5390 109 Gene3D G3DSA:1.10.10.10 2 108 6.0E-40 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0902 6a9a11317c5a7e361f20a8dea97a5390 109 SUPERFAMILY SSF46785 3 104 1.48E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0312 8b8a18d657c53a58d632186b9b0789b8 271 Gene3D G3DSA:3.40.190.10 137 234 4.9E-84 T 13-10-2018 BMD_0312 8b8a18d657c53a58d632186b9b0789b8 271 Gene3D G3DSA:3.40.190.10 50 268 4.9E-84 T 13-10-2018 BMD_0312 8b8a18d657c53a58d632186b9b0789b8 271 SMART SM00079 49 271 6.5E-6 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 BMD_0312 8b8a18d657c53a58d632186b9b0789b8 271 SUPERFAMILY SSF53850 3 270 8.86E-70 T 13-10-2018 BMD_0312 8b8a18d657c53a58d632186b9b0789b8 271 SMART SM00062 49 270 2.8E-77 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_0312 8b8a18d657c53a58d632186b9b0789b8 271 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 50 270 1.5E-58 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_4627 0c583b7914881b1ca1d92084dad2bfd5 342 Gene3D G3DSA:2.40.10.240 64 162 7.5E-139 T 13-10-2018 BMD_4627 0c583b7914881b1ca1d92084dad2bfd5 342 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 342 47.369 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BMD_4627 0c583b7914881b1ca1d92084dad2bfd5 342 Pfam PF02547 Queuosine biosynthesis protein 4 341 1.4E-144 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BMD_4627 0c583b7914881b1ca1d92084dad2bfd5 342 SUPERFAMILY SSF111337 2 342 4.84E-142 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BMD_4627 0c583b7914881b1ca1d92084dad2bfd5 342 Gene3D G3DSA:3.40.1780.10 14 341 7.5E-139 T 13-10-2018 BMD_4627 0c583b7914881b1ca1d92084dad2bfd5 342 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2 342 2.1E-152 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BMD_1377 7d9c4a5a9ecea545ed1f7b9f1a8db402 162 Gene3D G3DSA:3.10.450.40 96 158 1.9E-27 T 13-10-2018 BMD_1377 7d9c4a5a9ecea545ed1f7b9f1a8db402 162 Pfam PF03413 Peptidase propeptide and YPEB domain 97 157 3.3E-6 T 13-10-2018 IPR025711 PepSY domain BMD_1377 7d9c4a5a9ecea545ed1f7b9f1a8db402 162 SUPERFAMILY SSF54403 96 158 8.5E-18 T 13-10-2018 BMD_1377 7d9c4a5a9ecea545ed1f7b9f1a8db402 162 SUPERFAMILY SSF54403 32 93 1.6E-12 T 13-10-2018 BMD_1377 7d9c4a5a9ecea545ed1f7b9f1a8db402 162 Gene3D G3DSA:3.10.450.40 24 95 6.3E-22 T 13-10-2018 BMD_1437 28598a76ab6f9b70edac93bbf5cb32c0 180 Gene3D G3DSA:3.40.630.30 15 180 6.3E-38 T 13-10-2018 BMD_1437 28598a76ab6f9b70edac93bbf5cb32c0 180 Pfam PF13420 Acetyltransferase (GNAT) domain 21 173 9.1E-20 T 13-10-2018 BMD_1437 28598a76ab6f9b70edac93bbf5cb32c0 180 SUPERFAMILY SSF55729 19 177 3.09E-31 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1194 cfa9b81c84473ed8eedcbfd228f26b5c 316 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 107 159 1.2E-8 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain BMD_1194 cfa9b81c84473ed8eedcbfd228f26b5c 316 Gene3D G3DSA:3.30.565.10 159 307 4.2E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1194 cfa9b81c84473ed8eedcbfd228f26b5c 316 Pfam PF14501 GHKL domain 203 305 3.3E-12 T 13-10-2018 IPR032834 Sensor histidine kinase NatK, C-terminal domain BMD_1194 cfa9b81c84473ed8eedcbfd228f26b5c 316 SMART SM00387 204 310 3.8E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1194 cfa9b81c84473ed8eedcbfd228f26b5c 316 SUPERFAMILY SSF55874 168 296 1.96E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4526 ad18ad81309aee223c2788f78c2e3bc8 119 Gene3D G3DSA:1.10.760.10 49 119 4.7E-25 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BMD_4526 ad18ad81309aee223c2788f78c2e3bc8 119 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 48 115 4.9E-14 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_4526 ad18ad81309aee223c2788f78c2e3bc8 119 SUPERFAMILY SSF46626 7 117 4.22E-17 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BMD_4526 ad18ad81309aee223c2788f78c2e3bc8 119 PIRSF PIRSF000025 1 119 2.0E-40 T 13-10-2018 IPR012218 Cytochrome c, Bacillus subtilis c550-related GO:0005506|GO:0009055|GO:0016021|GO:0020037 BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 TIGRFAM TIGR02948 SigW_bacill: RNA polymerase sigma-W factor 1 187 1.3E-99 T 13-10-2018 IPR014294 RNA polymerase sigma-W, bacillaceae BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 Pfam PF04542 Sigma-70 region 2 24 89 6.8E-23 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 Pfam PF08281 Sigma-70, region 4 130 180 3.0E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 18 184 3.1E-36 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 Gene3D G3DSA:1.10.1740.10 5 124 1.7E-32 T 13-10-2018 BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 SUPERFAMILY SSF88946 8 98 8.79E-30 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 Gene3D G3DSA:1.10.10.10 125 187 1.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0187 193abfe532162ab58fb3ad8bfd528324 187 SUPERFAMILY SSF88659 117 184 7.29E-18 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 SUPERFAMILY SSF46785 8 80 5.36E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 Gene3D G3DSA:1.10.10.10 1 77 7.5E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 Pfam PF00155 Aminotransferase class I and II 146 469 4.2E-37 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 SUPERFAMILY SSF53383 90 473 3.16E-90 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 Gene3D G3DSA:3.90.1150.10 111 472 1.3E-103 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 SMART SM00345 17 76 1.4E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 Gene3D G3DSA:3.40.640.10 148 369 1.3E-103 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_3081 ad65a2063720790f89f34ed2d56df6c7 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 3.2E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_0767 c1de6803d9da7bc1b37caddac16990d9 233 SMART SM00849 13 207 2.7E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_0767 c1de6803d9da7bc1b37caddac16990d9 233 Gene3D G3DSA:3.60.15.10 3 232 1.1E-36 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_0767 c1de6803d9da7bc1b37caddac16990d9 233 Pfam PF00753 Metallo-beta-lactamase superfamily 11 207 1.7E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_0767 c1de6803d9da7bc1b37caddac16990d9 233 SUPERFAMILY SSF56281 7 219 1.26E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2721 75441e9352d3f0ceea44566e4e460ccd 79 SUPERFAMILY SSF52374 3 79 2.97E-20 T 13-10-2018 BMD_2721 75441e9352d3f0ceea44566e4e460ccd 79 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 17 78 8.4E-17 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_2721 75441e9352d3f0ceea44566e4e460ccd 79 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_2721 75441e9352d3f0ceea44566e4e460ccd 79 Gene3D G3DSA:3.40.50.620 1 79 3.7E-23 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_2038 6086999535e50217dcce74d3766def8c 160 Pfam PF03703 Bacterial PH domain 76 149 7.9E-14 T 13-10-2018 IPR005182 Domain of unknown function DUF304 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 302 36.296 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 SUPERFAMILY SSF50486 204 307 2.2E-31 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 Gene3D G3DSA:3.10.25.10 206 310 1.8E-39 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 132 155 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 Pfam PF00551 Formyl transferase 1 179 8.6E-40 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 Gene3D G3DSA:3.40.50.170 1 205 5.9E-86 T 13-10-2018 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 Pfam PF02911 Formyl transferase, C-terminal domain 203 298 7.9E-28 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 304 5.9E-112 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 BMD_4226 38c585ba94d711ecd35c058ab62d0243 312 SUPERFAMILY SSF53328 1 205 1.57E-67 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_3657 be159547ea2dbf0d1f4953da1a66a86a 137 SUPERFAMILY SSF143414 3 92 5.36E-28 T 13-10-2018 IPR037233 CcmK-like superfamily BMD_3657 be159547ea2dbf0d1f4953da1a66a86a 137 Gene3D G3DSA:3.30.70.1710 1 113 3.9E-35 T 13-10-2018 BMD_3657 be159547ea2dbf0d1f4953da1a66a86a 137 SMART SM00877 3 79 6.9E-30 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_3657 be159547ea2dbf0d1f4953da1a66a86a 137 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 64 1.0E-12 T 13-10-2018 BMD_3657 be159547ea2dbf0d1f4953da1a66a86a 137 Pfam PF00936 BMC domain 4 79 3.1E-26 T 13-10-2018 IPR000249 Microcompartment protein, bacteria BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 Gene3D G3DSA:3.30.70.1050 3 114 1.1E-32 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 239 1.8E-14 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 TIGRFAM TIGR00115 tig: trigger factor 12 421 3.5E-142 T 13-10-2018 IPR005215 Trigger factor GO:0015031 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 SUPERFAMILY SSF54534 89 243 3.34E-38 T 13-10-2018 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 SUPERFAMILY SSF102735 1 130 3.92E-39 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 PIRSF PIRSF003095 1 428 5.2E-140 T 13-10-2018 IPR005215 Trigger factor GO:0015031 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 Gene3D G3DSA:1.10.3120.10 115 425 7.8E-96 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 264 422 7.5E-48 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 Gene3D G3DSA:3.10.50.40 151 248 7.8E-96 T 13-10-2018 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 SUPERFAMILY SSF109998 250 425 7.32E-45 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 Hamap MF_00303 Trigger factor [tig]. 1 427 24.219 T 13-10-2018 IPR005215 Trigger factor GO:0015031 BMD_4678 f2c386db01a8041248bfe450bcbaec3f 428 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 3.1E-45 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 BMD_0586 283f6365f046c4bd403a1d7b612ac07f 131 Gene3D G3DSA:1.20.120.20 8 128 6.8E-6 T 13-10-2018 BMD_0586 283f6365f046c4bd403a1d7b612ac07f 131 Pfam PF12732 YtxH-like protein 9 90 8.3E-8 T 13-10-2018 IPR024623 Uncharacterised protein family YtxH BMD_0209 5cb95add99f2181a923ebba809b47075 225 SMART SM00862 144 219 3.3E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_0209 5cb95add99f2181a923ebba809b47075 225 SMART SM00448 1 112 3.5E-43 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0209 5cb95add99f2181a923ebba809b47075 225 SUPERFAMILY SSF52172 1 172 1.02E-38 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0209 5cb95add99f2181a923ebba809b47075 225 Gene3D G3DSA:1.10.10.10 121 221 8.5E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0209 5cb95add99f2181a923ebba809b47075 225 Gene3D G3DSA:3.40.50.2300 1 120 1.2E-38 T 13-10-2018 BMD_0209 5cb95add99f2181a923ebba809b47075 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 6.0E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_0209 5cb95add99f2181a923ebba809b47075 225 Pfam PF00072 Response regulator receiver domain 3 112 6.2E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4931 321fc03d8a4ce83464c619d2f8780acf 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_4931 321fc03d8a4ce83464c619d2f8780acf 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_4931 321fc03d8a4ce83464c619d2f8780acf 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 369 4.2E-100 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_4931 321fc03d8a4ce83464c619d2f8780acf 387 Gene3D G3DSA:1.20.1090.10 185 386 2.2E-47 T 13-10-2018 BMD_4931 321fc03d8a4ce83464c619d2f8780acf 387 SUPERFAMILY SSF56796 2 385 4.45E-117 T 13-10-2018 BMD_4931 321fc03d8a4ce83464c619d2f8780acf 387 Gene3D G3DSA:3.40.50.1970 1 184 1.8E-56 T 13-10-2018 BMD_0712 18e8f21d164848cb2eb37ff9eb509f73 454 Pfam PF00324 Amino acid permease 18 447 4.1E-117 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_0712 18e8f21d164848cb2eb37ff9eb509f73 454 PIRSF PIRSF006060 1 454 2.8E-69 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0712 18e8f21d164848cb2eb37ff9eb509f73 454 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_0712 18e8f21d164848cb2eb37ff9eb509f73 454 Gene3D G3DSA:1.20.1740.10 11 454 2.6E-61 T 13-10-2018 BMD_0092 f21b58c0a35941a04c8bdc62fde58e09 312 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 304 5.2E-137 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BMD_0092 f21b58c0a35941a04c8bdc62fde58e09 312 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 292 6.9E-73 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_0092 f21b58c0a35941a04c8bdc62fde58e09 312 SUPERFAMILY SSF53686 3 306 1.96E-106 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_0092 f21b58c0a35941a04c8bdc62fde58e09 312 Gene3D G3DSA:3.40.50.1100 46 144 4.8E-127 T 13-10-2018 BMD_0092 f21b58c0a35941a04c8bdc62fde58e09 312 Gene3D G3DSA:3.40.50.1100 7 300 4.8E-127 T 13-10-2018 BMD_0092 f21b58c0a35941a04c8bdc62fde58e09 312 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 304 8.4E-147 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BMD_0092 f21b58c0a35941a04c8bdc62fde58e09 312 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BMD_3999 6b5aa217e79a006fb993b84569a7cd15 401 Gene3D G3DSA:2.120.10.30 20 255 1.3E-9 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BMD_3999 6b5aa217e79a006fb993b84569a7cd15 401 SUPERFAMILY SSF82171 51 379 8.76E-17 T 13-10-2018 BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 Gene3D G3DSA:3.90.226.10 262 516 1.7E-91 T 13-10-2018 BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 96 110 5.7E-5 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 195 206 5.7E-5 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 130 148 5.7E-5 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 Gene3D G3DSA:3.90.226.10 2 259 9.2E-95 T 13-10-2018 BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 SUPERFAMILY SSF52096 244 516 5.45E-90 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 SUPERFAMILY SSF52096 4 257 1.61E-79 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4412 90ed0350a430dfdca7180b253eeda1cb 516 Pfam PF01039 Carboxyl transferase domain 29 514 5.1E-194 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 BMD_0169 aeea3fa2aea45ad523d4706657c05de8 235 Gene3D G3DSA:3.40.630.40 36 234 6.0E-58 T 13-10-2018 BMD_0169 aeea3fa2aea45ad523d4706657c05de8 235 SMART SM00646 115 226 7.3E-37 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_0169 aeea3fa2aea45ad523d4706657c05de8 235 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 42 226 2.4E-51 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_0169 aeea3fa2aea45ad523d4706657c05de8 235 SUPERFAMILY SSF53187 40 229 2.23E-53 T 13-10-2018 BMD_0169 aeea3fa2aea45ad523d4706657c05de8 235 TIGRFAM TIGR02883 spore_cwlD: N-acetylmuramoyl-L-alanine amidase CwlD 40 228 3.3E-84 T 13-10-2018 IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD MetaCyc: PWY-7883 BMD_4693 7622bcf86f06872e211295eefa10ddcc 147 SMART SM00347 30 130 1.6E-22 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_4693 7622bcf86f06872e211295eefa10ddcc 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 90 106 3.9E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_4693 7622bcf86f06872e211295eefa10ddcc 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 71 86 3.9E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_4693 7622bcf86f06872e211295eefa10ddcc 147 PRINTS PR00598 Bacterial regulatory protein MarR family signature 120 140 3.9E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_4693 7622bcf86f06872e211295eefa10ddcc 147 SUPERFAMILY SSF46785 11 145 2.28E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4693 7622bcf86f06872e211295eefa10ddcc 147 Gene3D G3DSA:1.10.10.10 1 146 2.2E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4693 7622bcf86f06872e211295eefa10ddcc 147 Pfam PF01047 MarR family 37 95 1.6E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0734 b71f3be189309639b0144a37742b399f 619 SUPERFAMILY SSF51735 409 518 2.66E-12 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0734 b71f3be189309639b0144a37742b399f 619 Pfam PF02080 TrkA-C domain 555 613 1.7E-9 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BMD_0734 b71f3be189309639b0144a37742b399f 619 Gene3D G3DSA:1.20.1530.20 4 398 1.9E-71 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily BMD_0734 b71f3be189309639b0144a37742b399f 619 SUPERFAMILY SSF116726 547 611 4.32E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_0734 b71f3be189309639b0144a37742b399f 619 Pfam PF02254 TrkA-N domain 409 516 9.4E-11 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BMD_0734 b71f3be189309639b0144a37742b399f 619 Gene3D G3DSA:3.40.50.720 399 534 9.9E-17 T 13-10-2018 BMD_0734 b71f3be189309639b0144a37742b399f 619 Pfam PF00999 Sodium/hydrogen exchanger family 11 391 2.0E-77 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BMD_0734 b71f3be189309639b0144a37742b399f 619 Gene3D G3DSA:3.30.70.1450 535 617 4.6E-19 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_4983 c05281340e4c6443b034239303d01c6d 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 222 4.3E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_4983 c05281340e4c6443b034239303d01c6d 222 Gene3D G3DSA:1.10.3720.10 9 222 2.7E-48 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4983 c05281340e4c6443b034239303d01c6d 222 SUPERFAMILY SSF161098 13 209 9.42E-46 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3032 a8556549b67d58be37847c6a34ff752b 176 Pfam PF02417 Chromate transporter 5 171 1.2E-38 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 BMD_4624 fc3d24146ddfad3a11b3e603485204c7 127 TIGRFAM TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family 9 121 7.0E-27 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane BMD_4624 fc3d24146ddfad3a11b3e603485204c7 127 Pfam PF12670 Protein of unknown function (DUF3792) 8 118 1.0E-20 T 13-10-2018 IPR023804 Protein of unknown function DUF3792, transmembrane BMD_1915 0264ca5124f123b44797e093802dde53 354 SUPERFAMILY SSF53659 2 349 4.42E-114 T 13-10-2018 BMD_1915 0264ca5124f123b44797e093802dde53 354 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 239 258 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BMD_1915 0264ca5124f123b44797e093802dde53 354 Gene3D G3DSA:3.40.718.10 1 352 5.7E-127 T 13-10-2018 BMD_1915 0264ca5124f123b44797e093802dde53 354 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 1 348 4.2E-186 T 13-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 BMD_1915 0264ca5124f123b44797e093802dde53 354 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 345 7.5E-83 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_1915 0264ca5124f123b44797e093802dde53 354 SMART SM01329 5 345 7.5E-163 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_0549 a4d2996df111b52acc944fd2b6fbd065 129 TIGRFAM TIGR00494 crcB: protein CrcB 6 120 6.1E-24 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BMD_0549 a4d2996df111b52acc944fd2b6fbd065 129 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 125 16.018 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BMD_0549 a4d2996df111b52acc944fd2b6fbd065 129 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 120 1.5E-21 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BMD_4331 2f5c2ead2c71bffe2137c33da765eae3 195 Pfam PF01553 Acyltransferase 24 146 1.2E-21 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BMD_4331 2f5c2ead2c71bffe2137c33da765eae3 195 SUPERFAMILY SSF69593 5 192 6.54E-51 T 13-10-2018 BMD_4331 2f5c2ead2c71bffe2137c33da765eae3 195 SMART SM00563 37 149 2.3E-30 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BMD_5019 af1780fda36cea4fadb1a17194ec8206 175 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 9 160 1.6E-29 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 BMD_5019 af1780fda36cea4fadb1a17194ec8206 175 SUPERFAMILY SSF52540 8 142 1.21E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5019 af1780fda36cea4fadb1a17194ec8206 175 Gene3D G3DSA:3.40.50.300 8 174 3.5E-50 T 13-10-2018 BMD_5019 af1780fda36cea4fadb1a17194ec8206 175 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 9 140 2.2E-29 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 BMD_3615 625d59bb013a21b387c128830a5c8643 143 Gene3D G3DSA:3.10.180.10 9 143 5.9E-45 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3615 625d59bb013a21b387c128830a5c8643 143 SUPERFAMILY SSF54593 2 137 1.98E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3615 625d59bb013a21b387c128830a5c8643 143 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 135 1.1E-9 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_1944 b83920d8586857965b94a1312cd046d2 288 Gene3D G3DSA:3.20.20.370 48 280 9.8E-51 T 13-10-2018 BMD_1944 b83920d8586857965b94a1312cd046d2 288 Pfam PF01522 Polysaccharide deacetylase 84 187 5.2E-29 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_1944 b83920d8586857965b94a1312cd046d2 288 SUPERFAMILY SSF88713 86 277 1.08E-45 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_1174 a8015f83c0fda79aadfa83771110a26b 288 SUPERFAMILY SSF110857 2 126 6.02E-27 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily BMD_1174 a8015f83c0fda79aadfa83771110a26b 288 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 124 1.8E-22 T 13-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like BMD_1174 a8015f83c0fda79aadfa83771110a26b 288 Gene3D G3DSA:3.10.490.10 2 126 1.4E-30 T 13-10-2018 BMD_1174 a8015f83c0fda79aadfa83771110a26b 288 SUPERFAMILY SSF110857 134 262 1.44E-18 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily BMD_1174 a8015f83c0fda79aadfa83771110a26b 288 Pfam PF13772 AIG2-like family 192 273 1.4E-11 T 13-10-2018 BMD_1174 a8015f83c0fda79aadfa83771110a26b 288 Gene3D G3DSA:3.10.490.10 128 287 1.4E-59 T 13-10-2018 BMD_5251 8e1fec34977bc48d4a50c79f5e345a77 454 SUPERFAMILY SSF52540 183 433 1.35E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5251 8e1fec34977bc48d4a50c79f5e345a77 454 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 9 442 1.9E-187 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 BMD_5251 8e1fec34977bc48d4a50c79f5e345a77 454 SUPERFAMILY SSF48024 8 119 4.84E-37 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 BMD_5251 8e1fec34977bc48d4a50c79f5e345a77 454 Gene3D G3DSA:3.40.50.300 167 454 8.7E-119 T 13-10-2018 BMD_5251 8e1fec34977bc48d4a50c79f5e345a77 454 Pfam PF03796 DnaB-like helicase C terminal domain 185 440 1.8E-119 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 BMD_5251 8e1fec34977bc48d4a50c79f5e345a77 454 Pfam PF00772 DnaB-like helicase N terminal domain 10 111 1.2E-33 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 BMD_5251 8e1fec34977bc48d4a50c79f5e345a77 454 Gene3D G3DSA:1.10.860.10 1 166 7.9E-65 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BMD_0552 2fa4c3e13faa2be0f8f9ca192583d187 375 Pfam PF01266 FAD dependent oxidoreductase 6 350 1.0E-71 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BMD_0552 2fa4c3e13faa2be0f8f9ca192583d187 375 SUPERFAMILY SSF54373 224 311 1.7E-17 T 13-10-2018 BMD_0552 2fa4c3e13faa2be0f8f9ca192583d187 375 SUPERFAMILY SSF51905 4 370 4.53E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0552 2fa4c3e13faa2be0f8f9ca192583d187 375 Gene3D G3DSA:3.50.50.60 6 352 1.3E-109 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0552 2fa4c3e13faa2be0f8f9ca192583d187 375 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 7 355 7.1E-102 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 BMD_0552 2fa4c3e13faa2be0f8f9ca192583d187 375 Gene3D G3DSA:3.30.9.10 92 311 1.3E-109 T 13-10-2018 BMD_0532 9c9b91d67abfa0a6a02e801f4062cbc9 184 Gene3D G3DSA:3.20.20.400 1 183 1.5E-71 T 13-10-2018 IPR035928 GlpP-like superfamily BMD_0532 9c9b91d67abfa0a6a02e801f4062cbc9 184 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 8 180 2.8E-66 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 BMD_0532 9c9b91d67abfa0a6a02e801f4062cbc9 184 SUPERFAMILY SSF110391 8 181 1.03E-62 T 13-10-2018 IPR035928 GlpP-like superfamily BMD_0532 9c9b91d67abfa0a6a02e801f4062cbc9 184 PIRSF PIRSF016897 1 184 7.5E-67 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 PIRSF PIRSF005485 1 340 1.6E-120 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 329 32.628 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 SUPERFAMILY SSF55781 71 339 8.63E-65 T 13-10-2018 BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 Gene3D G3DSA:3.30.390.60 128 229 9.4E-53 T 13-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 SUPERFAMILY SSF46785 2 84 5.45E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 335 5.4E-106 T 13-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 Gene3D G3DSA:3.30.450.40 104 336 9.4E-53 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 Gene3D G3DSA:1.10.10.10 1 84 9.1E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4553 de687a2c6db30ed75fbca49c2eade000 342 Pfam PF01628 HrcA protein C terminal domain 104 322 1.5E-60 T 13-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 BMD_4800 84e105cd9634644f0382dbbade9536d6 213 Pfam PF01842 ACT domain 139 181 7.0E-7 T 13-10-2018 IPR002912 ACT domain BMD_4800 84e105cd9634644f0382dbbade9536d6 213 SUPERFAMILY SSF54631 1 130 1.17E-30 T 13-10-2018 BMD_4800 84e105cd9634644f0382dbbade9536d6 213 SMART SM00116 81 128 8.9E-12 T 13-10-2018 IPR000644 CBS domain BMD_4800 84e105cd9634644f0382dbbade9536d6 213 SMART SM00116 10 58 1.1E-11 T 13-10-2018 IPR000644 CBS domain BMD_4800 84e105cd9634644f0382dbbade9536d6 213 SUPERFAMILY SSF55021 138 205 2.25E-8 T 13-10-2018 BMD_4800 84e105cd9634644f0382dbbade9536d6 213 Gene3D G3DSA:3.10.580.10 1 132 3.3E-36 T 13-10-2018 BMD_4800 84e105cd9634644f0382dbbade9536d6 213 Gene3D G3DSA:3.30.70.260 133 200 3.4E-5 T 13-10-2018 BMD_4800 84e105cd9634644f0382dbbade9536d6 213 Pfam PF00571 CBS domain 77 125 8.2E-11 T 13-10-2018 IPR000644 CBS domain BMD_4800 84e105cd9634644f0382dbbade9536d6 213 Pfam PF00571 CBS domain 3 56 2.0E-13 T 13-10-2018 IPR000644 CBS domain BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Pfam PF00183 Hsp90 protein 184 229 3.2E-7 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Pfam PF00183 Hsp90 protein 224 624 2.5E-108 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Gene3D G3DSA:1.20.120.790 492 625 5.3E-34 T 13-10-2018 IPR037196 HSP90, C-terminal domain BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 152 2.0E-12 T 13-10-2018 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Gene3D G3DSA:3.30.230.80 235 402 8.2E-56 T 13-10-2018 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 625 26.535 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 SUPERFAMILY SSF110942 510 624 1.7E-28 T 13-10-2018 IPR037196 HSP90, C-terminal domain BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Gene3D G3DSA:3.40.50.11260 403 489 5.6E-26 T 13-10-2018 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PRINTS PR00775 90kDa heat shock protein signature 72 89 8.8E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PRINTS PR00775 90kDa heat shock protein signature 90 107 8.8E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PRINTS PR00775 90kDa heat shock protein signature 115 137 8.8E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PRINTS PR00775 90kDa heat shock protein signature 188 206 8.8E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PRINTS PR00775 90kDa heat shock protein signature 23 45 8.8E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PRINTS PR00775 90kDa heat shock protein signature 165 182 8.8E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PRINTS PR00775 90kDa heat shock protein signature 2 22 8.8E-55 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 SUPERFAMILY SSF55874 2 211 1.64E-61 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 PIRSF PIRSF002583 1 625 8.6E-199 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 22 31 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 SUPERFAMILY SSF54211 236 488 3.87E-81 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_2385 d7ff24cc4f3a0ef58dc033e073917ffa 625 Gene3D G3DSA:3.30.565.10 1 225 5.4E-73 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2239 5f2832fda4bd1d4adebf3c72a9a57c1a 844 SUPERFAMILY SSF52540 159 572 2.92E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2239 5f2832fda4bd1d4adebf3c72a9a57c1a 844 SMART SM00382 161 382 8.2E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2239 5f2832fda4bd1d4adebf3c72a9a57c1a 844 Pfam PF13086 AAA domain 149 363 3.0E-27 T 13-10-2018 BMD_2239 5f2832fda4bd1d4adebf3c72a9a57c1a 844 Pfam PF13087 AAA domain 390 575 1.4E-26 T 13-10-2018 BMD_2239 5f2832fda4bd1d4adebf3c72a9a57c1a 844 Gene3D G3DSA:3.40.50.300 403 613 3.4E-34 T 13-10-2018 BMD_2239 5f2832fda4bd1d4adebf3c72a9a57c1a 844 Gene3D G3DSA:3.40.50.300 111 389 7.4E-46 T 13-10-2018 BMD_4786 f1468fe5d4818c17a2247ff01ef578cc 266 Gene3D G3DSA:2.60.200.30 108 244 6.7E-76 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BMD_4786 f1468fe5d4818c17a2247ff01ef578cc 266 Pfam PF01513 ATP-NAD kinase 40 251 4.2E-19 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BMD_4786 f1468fe5d4818c17a2247ff01ef578cc 266 Gene3D G3DSA:3.40.50.10330 39 266 6.7E-76 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 BMD_4786 f1468fe5d4818c17a2247ff01ef578cc 266 Hamap MF_00361 NAD kinase [nadK]. 4 266 21.269 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BMD_4786 f1468fe5d4818c17a2247ff01ef578cc 266 SUPERFAMILY SSF111331 9 265 4.41E-57 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BMD_2403 facc507e197c198a2a607f9f90fb9323 433 ProSitePatterns PS00953 Glycosyl hydrolases family 25 active sites signature. 13 46 - T 13-10-2018 IPR008270 Glycoside hydrolase, family 25, active site GO:0003796|GO:0009253|GO:0016998 BMD_2403 facc507e197c198a2a607f9f90fb9323 433 Pfam PF01183 Glycosyl hydrolases family 25 12 191 1.0E-46 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 BMD_2403 facc507e197c198a2a607f9f90fb9323 433 Pfam PF01471 Putative peptidoglycan binding domain 230 287 6.5E-16 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_2403 facc507e197c198a2a607f9f90fb9323 433 SUPERFAMILY SSF51445 7 203 2.11E-51 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_2403 facc507e197c198a2a607f9f90fb9323 433 SUPERFAMILY SSF47090 223 288 1.18E-16 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_2403 facc507e197c198a2a607f9f90fb9323 433 Gene3D G3DSA:3.20.20.80 1 217 1.2E-68 T 13-10-2018 BMD_2403 facc507e197c198a2a607f9f90fb9323 433 SMART SM00641 9 112 4.0E-14 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup BMD_2403 facc507e197c198a2a607f9f90fb9323 433 Gene3D G3DSA:1.10.101.10 218 299 1.4E-17 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 6.6E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.6E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 6.6E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 250 1.3E-70 T 13-10-2018 BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 Gene3D G3DSA:3.40.50.720 1 252 4.6E-87 T 13-10-2018 BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 3.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2325 30b9f683a7b1d4c7c07a606a84762f68 253 SUPERFAMILY SSF51735 4 252 1.54E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2379 56d1f3e24b1ef858d4fa7e33b45c33e8 322 Pfam PF12368 Rhodanase C-terminal 224 290 8.4E-15 T 13-10-2018 IPR022111 Rhodanase, C-terminal BMD_2379 56d1f3e24b1ef858d4fa7e33b45c33e8 322 Gene3D G3DSA:3.40.250.10 104 253 5.7E-46 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_2379 56d1f3e24b1ef858d4fa7e33b45c33e8 322 Gene3D G3DSA:3.30.70.100 1 99 3.7E-31 T 13-10-2018 BMD_2379 56d1f3e24b1ef858d4fa7e33b45c33e8 322 SMART SM00450 117 218 1.4E-20 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_2379 56d1f3e24b1ef858d4fa7e33b45c33e8 322 Hamap MF_00469 UPF0176 protein YceA [yceA]. 5 269 40.526 T 13-10-2018 IPR020936 Uncharacterised protein family UPF0176 BMD_2379 56d1f3e24b1ef858d4fa7e33b45c33e8 322 Pfam PF00581 Rhodanese-like domain 118 212 1.1E-12 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_2379 56d1f3e24b1ef858d4fa7e33b45c33e8 322 SUPERFAMILY SSF52821 90 248 2.19E-37 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SMART SM00387 516 628 3.9E-42 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Gene3D G3DSA:3.30.565.10 480 634 2.9E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 517 627 9.8E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SMART SM00304 232 284 1.4E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SUPERFAMILY SSF55785 278 396 2.44E-12 T 13-10-2018 IPR035965 PAS domain superfamily BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 291 403 7.3E-6 T 13-10-2018 IPR000014 PAS domain BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Gene3D G3DSA:1.10.287.130 396 475 4.6E-29 T 13-10-2018 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Gene3D G3DSA:3.30.450.20 32 172 2.5E-37 T 13-10-2018 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Gene3D G3DSA:3.30.450.20 173 210 2.3E-6 T 13-10-2018 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SMART SM00091 291 357 8.2E-7 T 13-10-2018 IPR000014 PAS domain BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Gene3D G3DSA:1.10.287.130 230 301 3.7E-9 T 13-10-2018 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SMART SM00388 404 471 1.6E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 PRINTS PR00344 Bacterial sensor protein C-terminal signature 553 567 2.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 581 2.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 PRINTS PR00344 Bacterial sensor protein C-terminal signature 612 625 2.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 PRINTS PR00344 Bacterial sensor protein C-terminal signature 588 606 2.6E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Pfam PF00989 PAS fold 293 395 4.5E-8 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Pfam PF00512 His Kinase A (phospho-acceptor) domain 405 470 8.0E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SUPERFAMILY SSF47384 390 471 9.61E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SUPERFAMILY SSF158472 233 281 9.68E-9 T 13-10-2018 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 SUPERFAMILY SSF55874 460 628 1.13E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Pfam PF00672 HAMP domain 233 281 3.6E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_5244 0daf97590bc20aaeb32fa96fccabe15a 635 Gene3D G3DSA:3.30.450.20 302 395 1.3E-21 T 13-10-2018 BMD_3208 5424a2a89d6dd924378045a1ab8bf66b 204 Pfam PF13460 NAD(P)H-binding 7 192 1.0E-49 T 13-10-2018 IPR016040 NAD(P)-binding domain BMD_3208 5424a2a89d6dd924378045a1ab8bf66b 204 Gene3D G3DSA:3.40.50.720 1 203 2.1E-53 T 13-10-2018 BMD_3208 5424a2a89d6dd924378045a1ab8bf66b 204 SUPERFAMILY SSF51735 1 200 2.43E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4859 600f73cb0c5c92c75dee3c474db0bab2 75 Pfam PF01809 Haemolytic domain 4 69 1.1E-29 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BMD_4859 600f73cb0c5c92c75dee3c474db0bab2 75 SMART SM01234 2 69 3.4E-44 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BMD_4859 600f73cb0c5c92c75dee3c474db0bab2 75 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 17 69 6.0E-19 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BMD_4859 600f73cb0c5c92c75dee3c474db0bab2 75 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 6 74 1.2E-32 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BMD_4859 600f73cb0c5c92c75dee3c474db0bab2 75 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 2 70 24.341 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BMD_0302 f9bfbe70f559546bc72307047c3fd038 327 Gene3D G3DSA:3.40.50.2300 56 298 1.1E-59 T 13-10-2018 BMD_0302 f9bfbe70f559546bc72307047c3fd038 327 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 45 316 8.1E-40 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 BMD_0302 f9bfbe70f559546bc72307047c3fd038 327 Gene3D G3DSA:3.40.50.2300 148 310 1.1E-59 T 13-10-2018 BMD_0302 f9bfbe70f559546bc72307047c3fd038 327 SUPERFAMILY SSF53822 46 268 5.18E-11 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_0651 ff8dc4881bf3195b08377121063196e4 93 Pfam PF10803 Spore germination GerPB 3 53 2.8E-26 T 13-10-2018 IPR024255 Spore germination GerPB BMD_0651 ff8dc4881bf3195b08377121063196e4 93 ProDom PD027559 GERMINATION SPORE GERPB PROBABLE PB SPORULATION PB-RELATED 3 52 2.0E-10 T 13-10-2018 IPR024255 Spore germination GerPB BMD_4368 71c8b009e13363dcdf57a33fd2e96f8f 299 Pfam PF06207 Protein of unknown function (DUF1002) 45 262 7.0E-79 T 13-10-2018 IPR009343 Protein of unknown function DUF1002 BMD_0816 32d622d87d4162f2ebd8b862139ce98d 245 SMART SM00382 36 224 2.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0816 32d622d87d4162f2ebd8b862139ce98d 245 Pfam PF00005 ABC transporter 27 168 1.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0816 32d622d87d4162f2ebd8b862139ce98d 245 SUPERFAMILY SSF52540 8 240 9.8E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0816 32d622d87d4162f2ebd8b862139ce98d 245 Gene3D G3DSA:3.40.50.300 7 242 7.8E-64 T 13-10-2018 BMD_0816 32d622d87d4162f2ebd8b862139ce98d 245 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4825 36cdb4123d5e7dcf9b822b60686f9968 184 Pfam PF13563 2'-5' RNA ligase superfamily 16 164 8.0E-18 T 13-10-2018 BMD_4825 36cdb4123d5e7dcf9b822b60686f9968 184 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 6 181 6.0E-39 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 BMD_4825 36cdb4123d5e7dcf9b822b60686f9968 184 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 181 18.539 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 BMD_4825 36cdb4123d5e7dcf9b822b60686f9968 184 SUPERFAMILY SSF55144 6 182 2.09E-32 T 13-10-2018 IPR009097 Cyclic phosphodiesterase BMD_4825 36cdb4123d5e7dcf9b822b60686f9968 184 Gene3D G3DSA:3.90.1140.10 1 182 5.6E-36 T 13-10-2018 BMD_4530 c66ba853e963b95f95d6c088c3e73a22 121 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 1 116 1.8E-36 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 BMD_0764 b67e2de0eb1f5c77e22f23866a9cce9d 209 SUPERFAMILY SSF110395 4 204 1.06E-64 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 BMD_0764 b67e2de0eb1f5c77e22f23866a9cce9d 209 Pfam PF03932 CutC family 4 203 1.5E-72 T 13-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 BMD_0764 b67e2de0eb1f5c77e22f23866a9cce9d 209 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 3 205 28.71 T 13-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 BMD_0764 b67e2de0eb1f5c77e22f23866a9cce9d 209 Gene3D G3DSA:3.20.20.380 3 206 9.8E-79 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 BMD_1658 3627b84e90cce2098b68b33e9962f4f0 478 Pfam PF02447 GntP family permease 58 427 3.5E-6 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.2E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.2E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.2E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 Gene3D G3DSA:3.30.70.920 51 138 1.5E-18 T 13-10-2018 BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 SMART SM00344 1 107 2.4E-35 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 SUPERFAMILY SSF46785 1 60 4.56E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 Pfam PF01037 Lrp/AsnC ligand binding domain 74 133 5.5E-11 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 Gene3D G3DSA:1.10.10.10 1 50 4.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 SUPERFAMILY SSF54909 64 137 2.15E-14 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_0759 86bc559c1f6339d251dea6ceb2998da0 149 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 8.1E-15 T 13-10-2018 BMD_1975 6282cff18ca22d2b292ef805042a36bc 457 PIRSF PIRSF006603 1 455 1.3E-71 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1975 6282cff18ca22d2b292ef805042a36bc 457 Pfam PF01554 MatE 20 180 1.2E-34 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1975 6282cff18ca22d2b292ef805042a36bc 457 Pfam PF01554 MatE 247 407 4.2E-34 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1975 6282cff18ca22d2b292ef805042a36bc 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 421 1.5E-103 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_0793 4da308eb58ddfc9433d6c59b6b6650ab 122 Pfam PF01638 HxlR-like helix-turn-helix 14 102 9.3E-37 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_0793 4da308eb58ddfc9433d6c59b6b6650ab 122 Gene3D G3DSA:1.10.10.10 1 121 4.7E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0793 4da308eb58ddfc9433d6c59b6b6650ab 122 SUPERFAMILY SSF46785 3 111 1.53E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0726 3fadd0ebe976315d28da4816ea0aa207 229 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 129 157 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BMD_0726 3fadd0ebe976315d28da4816ea0aa207 229 SUPERFAMILY SSF53955 106 227 3.03E-47 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily BMD_0726 3fadd0ebe976315d28da4816ea0aa207 229 Pfam PF01464 Transglycosylase SLT domain 112 218 9.1E-30 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 BMD_0726 3fadd0ebe976315d28da4816ea0aa207 229 Gene3D G3DSA:1.10.530.10 59 229 1.8E-52 T 13-10-2018 BMD_4276 2889bd2fe557ed88875031e191f2f56d 70 Pfam PF00364 Biotin-requiring enzyme 3 69 4.9E-16 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_4276 2889bd2fe557ed88875031e191f2f56d 70 Gene3D G3DSA:2.40.50.100 3 70 7.5E-21 T 13-10-2018 BMD_4276 2889bd2fe557ed88875031e191f2f56d 70 SUPERFAMILY SSF51230 3 69 4.06E-19 T 13-10-2018 IPR011053 Single hybrid motif BMD_2614 3530f122989027d00b683d63a40a63d5 65 Gene3D G3DSA:4.10.810.10 12 65 6.7E-15 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_2614 3530f122989027d00b683d63a40a63d5 65 Pfam PF08858 IDEAL domain 25 61 1.1E-12 T 13-10-2018 IPR014957 IDEAL domain BMD_2614 3530f122989027d00b683d63a40a63d5 65 SMART SM00914 25 61 1.4E-8 T 13-10-2018 IPR014957 IDEAL domain BMD_4384 5c84d38390e35bbb4e621ef434431e38 75 Pfam PF14004 Protein of unknown function (DUF4227) 8 75 2.3E-31 T 13-10-2018 IPR025321 Protein of unknown function DUF4227 BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 55 3.2E-17 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 Pfam PF08359 YsiA-like protein, C-terminal region 58 190 8.5E-58 T 13-10-2018 IPR013570 Transcription regulator YsiA, C-terminal BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 Gene3D G3DSA:1.10.10.60 1 49 3.3E-23 T 13-10-2018 BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 SUPERFAMILY SSF48498 78 191 1.61E-28 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 SUPERFAMILY SSF46689 3 82 8.25E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 2.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 2.2E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_4719 1d9b668b17fccfdf7d80aa86716675e2 194 Gene3D G3DSA:1.10.357.10 50 193 1.4E-36 T 13-10-2018 BMD_2022 a2f97fccb2e3ab7e8772d339f230bc24 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 118 1.7E-19 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_2022 a2f97fccb2e3ab7e8772d339f230bc24 232 SUPERFAMILY SSF161098 15 212 2.75E-38 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2022 a2f97fccb2e3ab7e8772d339f230bc24 232 Gene3D G3DSA:1.10.3720.10 4 227 6.3E-46 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2022 a2f97fccb2e3ab7e8772d339f230bc24 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 213 4.8E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 12 494 46.793 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 Pfam PF00152 tRNA synthetases class II (D, K and N) 155 491 1.3E-84 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 Gene3D G3DSA:2.40.50.140 6 146 2.8E-47 T 13-10-2018 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 SUPERFAMILY SSF50249 5 146 2.79E-45 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0098 e45032b328594313cbe48cc1281d0d76 494 SUPERFAMILY SSF55681 153 492 5.94E-126 T 13-10-2018 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 Pfam PF01336 OB-fold nucleic acid binding domain 60 137 1.4E-15 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 PRINTS PR00982 Lysyl-tRNA synthetase signature 190 200 4.9E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 PRINTS PR00982 Lysyl-tRNA synthetase signature 376 392 4.9E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 PRINTS PR00982 Lysyl-tRNA synthetase signature 206 222 4.9E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 PRINTS PR00982 Lysyl-tRNA synthetase signature 253 270 4.9E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 PRINTS PR00982 Lysyl-tRNA synthetase signature 235 248 4.9E-40 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 Gene3D G3DSA:3.30.930.10 147 491 1.3E-139 T 13-10-2018 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 PIRSF PIRSF039101 2 494 4.2E-205 T 13-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0098 e45032b328594313cbe48cc1281d0d76 494 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 5 493 3.2E-229 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_1930 acf9920e97b5c69759c8cc9bf4009157 231 SUPERFAMILY SSF55166 18 133 1.26E-29 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_1930 acf9920e97b5c69759c8cc9bf4009157 231 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 71 133 5.8E-18 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 BMD_1930 acf9920e97b5c69759c8cc9bf4009157 231 Pfam PF01471 Putative peptidoglycan binding domain 165 222 1.2E-17 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_1930 acf9920e97b5c69759c8cc9bf4009157 231 Gene3D G3DSA:1.10.101.10 150 230 1.1E-22 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_1930 acf9920e97b5c69759c8cc9bf4009157 231 Gene3D G3DSA:3.30.1380.10 6 132 1.7E-38 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_1930 acf9920e97b5c69759c8cc9bf4009157 231 SUPERFAMILY SSF47090 153 223 8.11E-21 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_1937 9a1bd96c1970019a1eb6b2a9a961500c 303 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 301 3.7E-136 T 13-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 BMD_1937 9a1bd96c1970019a1eb6b2a9a961500c 303 Pfam PF04204 Homoserine O-succinyltransferase 2 300 9.9E-139 T 13-10-2018 IPR033752 MetA family BMD_1937 9a1bd96c1970019a1eb6b2a9a961500c 303 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 300 42.893 T 13-10-2018 IPR033752 MetA family BMD_1937 9a1bd96c1970019a1eb6b2a9a961500c 303 Gene3D G3DSA:3.40.50.880 1 301 4.6E-127 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1937 9a1bd96c1970019a1eb6b2a9a961500c 303 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 290 2.0E-100 T 13-10-2018 BMD_1937 9a1bd96c1970019a1eb6b2a9a961500c 303 PIRSF PIRSF000450 1 303 2.2E-147 T 13-10-2018 IPR033752 MetA family BMD_1937 9a1bd96c1970019a1eb6b2a9a961500c 303 SUPERFAMILY SSF52317 17 298 2.51E-99 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 Gene3D G3DSA:3.30.1330.30 1 81 3.7E-23 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 5 81 5.2E-15 T 13-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 ProSitePatterns PS00709 Ribosomal protein L30e signature 1. 9 33 - T 13-10-2018 IPR022991 Ribosomal protein L30e, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 SUPERFAMILY SSF55315 5 81 2.95E-20 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 PRINTS PR00884 Ribosomal protein HS6 signature 20 30 2.5E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 PRINTS PR00884 Ribosomal protein HS6 signature 30 41 2.5E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 PRINTS PR00884 Ribosomal protein HS6 signature 56 66 2.5E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0128 3dbf58e9dc947b537fcd34c36eaee69d 82 PRINTS PR00884 Ribosomal protein HS6 signature 70 82 2.5E-6 T 13-10-2018 IPR000948 Ribosomal protein L7Ae, prokaryotes GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0888 2115b0d94b55fb4c23fdd2bb6e507cb9 336 Gene3D G3DSA:3.40.190.10 39 313 2.2E-94 T 13-10-2018 BMD_0888 2115b0d94b55fb4c23fdd2bb6e507cb9 336 Gene3D G3DSA:3.40.190.10 119 221 2.2E-94 T 13-10-2018 BMD_0888 2115b0d94b55fb4c23fdd2bb6e507cb9 336 Pfam PF09084 NMT1/THI5 like 46 260 1.3E-72 T 13-10-2018 IPR015168 SsuA/THI5-like BMD_0888 2115b0d94b55fb4c23fdd2bb6e507cb9 336 SUPERFAMILY SSF53850 38 326 2.74E-39 T 13-10-2018 BMD_0916 56b46351a38f2cd2a63e9b060374c09e 212 Gene3D G3DSA:2.40.30.170 98 212 2.7E-28 T 13-10-2018 BMD_0916 56b46351a38f2cd2a63e9b060374c09e 212 Gene3D G3DSA:2.40.50.100 48 91 2.3E-5 T 13-10-2018 BMD_0916 56b46351a38f2cd2a63e9b060374c09e 212 Pfam PF13437 HlyD family secretion protein 85 200 3.4E-13 T 13-10-2018 BMD_0916 56b46351a38f2cd2a63e9b060374c09e 212 SUPERFAMILY SSF51230 40 112 5.37E-13 T 13-10-2018 IPR011053 Single hybrid motif BMD_5232 0da1d50c078a11d1020699abf260e243 345 Gene3D G3DSA:3.10.450.40 287 345 5.2E-8 T 13-10-2018 BMD_5232 0da1d50c078a11d1020699abf260e243 345 Gene3D G3DSA:3.10.450.40 101 162 1.4E-5 T 13-10-2018 BMD_5232 0da1d50c078a11d1020699abf260e243 345 Gene3D G3DSA:3.10.450.40 31 100 2.1E-7 T 13-10-2018 BMD_5232 0da1d50c078a11d1020699abf260e243 345 Gene3D G3DSA:3.10.450.40 219 286 4.5E-10 T 13-10-2018 BMD_5232 0da1d50c078a11d1020699abf260e243 345 Pfam PF03413 Peptidase propeptide and YPEB domain 43 98 7.6E-6 T 13-10-2018 IPR025711 PepSY domain BMD_5232 0da1d50c078a11d1020699abf260e243 345 Pfam PF03413 Peptidase propeptide and YPEB domain 290 342 1.3E-4 T 13-10-2018 IPR025711 PepSY domain BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 Gene3D G3DSA:3.40.710.10 283 478 2.8E-110 T 13-10-2018 BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 Pfam PF00905 Penicillin binding protein transpeptidase domain 246 556 4.4E-85 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 TIGRFAM TIGR02214 spoVD_pbp: stage V sporulation protein D 12 637 3.7E-271 T 13-10-2018 IPR011927 Stage V sporulation protein D BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 Gene3D G3DSA:3.30.450.330 222 561 2.8E-110 T 13-10-2018 BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 SUPERFAMILY SSF56519 51 220 2.88E-44 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 Pfam PF03793 PASTA domain 584 638 4.2E-13 T 13-10-2018 IPR005543 PASTA domain BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 SMART SM00740 580 638 8.5E-17 T 13-10-2018 IPR005543 PASTA domain BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 Pfam PF03717 Penicillin-binding Protein dimerisation domain 56 202 6.3E-24 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 Gene3D G3DSA:3.30.10.20 582 638 4.3E-10 T 13-10-2018 BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 SUPERFAMILY SSF56601 171 568 2.73E-99 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 Gene3D G3DSA:3.90.1310.30 49 220 9.5E-46 T 13-10-2018 BMD_4268 001c4de0ceefcfe6ec7f53280b4db731 638 SUPERFAMILY SSF54184 584 637 5.1E-12 T 13-10-2018 BMD_2539 45f1e084bf6de726be0bb2445f1afc6b 140 PIRSF PIRSF003230 1 137 6.4E-33 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BMD_2539 45f1e084bf6de726be0bb2445f1afc6b 140 SUPERFAMILY SSF54637 3 133 1.2E-40 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_2539 45f1e084bf6de726be0bb2445f1afc6b 140 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 122 3.0E-37 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BMD_2539 45f1e084bf6de726be0bb2445f1afc6b 140 Pfam PF03061 Thioesterase superfamily 18 101 2.8E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_2539 45f1e084bf6de726be0bb2445f1afc6b 140 Gene3D G3DSA:3.10.129.10 3 139 3.4E-37 T 13-10-2018 BMD_1358 30bb05000c5a3bf322d0392ee9329744 119 SUPERFAMILY SSF160755 1 114 2.09E-39 T 13-10-2018 IPR036491 YugN-like superfamily BMD_1358 30bb05000c5a3bf322d0392ee9329744 119 Gene3D G3DSA:3.30.310.100 1 119 3.8E-44 T 13-10-2018 IPR036491 YugN-like superfamily BMD_1358 30bb05000c5a3bf322d0392ee9329744 119 Pfam PF08868 YugN-like family 11 101 5.5E-13 T 13-10-2018 IPR014967 Uncharacterised protein family, YugN-like BMD_0406 40ada55e18b92f87dafad25843ef131f 97 Pfam PF04259 Small, acid-soluble spore protein, gamma-type 11 92 2.6E-26 T 13-10-2018 IPR006341 Acid-soluble spore protein, gamma-type GO:0030435 BMD_0406 40ada55e18b92f87dafad25843ef131f 97 TIGRFAM TIGR01442 SASP_gamma: small, acid-soluble spore protein, gamma-type 10 92 4.0E-32 T 13-10-2018 IPR006341 Acid-soluble spore protein, gamma-type GO:0030435 BMD_0821 32c22bd658ef86b56877c14be248a49c 398 Pfam PF12704 MacB-like periplasmic core domain 21 241 2.0E-31 T 13-10-2018 IPR025857 MacB-like periplasmic core domain BMD_0821 32c22bd658ef86b56877c14be248a49c 398 Pfam PF02687 FtsX-like permease family 304 391 3.2E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BMD_1299 912053707eb4c43764cccd401be2d24a 508 SUPERFAMILY SSF109604 313 506 3.77E-29 T 13-10-2018 BMD_1299 912053707eb4c43764cccd401be2d24a 508 Pfam PF02541 Ppx/GppA phosphatase family 18 302 1.1E-47 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 BMD_1299 912053707eb4c43764cccd401be2d24a 508 SUPERFAMILY SSF53067 129 303 4.35E-37 T 13-10-2018 BMD_1299 912053707eb4c43764cccd401be2d24a 508 Gene3D G3DSA:3.30.420.150 110 300 2.4E-49 T 13-10-2018 BMD_1299 912053707eb4c43764cccd401be2d24a 508 Gene3D G3DSA:3.30.420.40 2 109 6.5E-25 T 13-10-2018 BMD_1299 912053707eb4c43764cccd401be2d24a 508 SUPERFAMILY SSF53067 5 126 2.81E-28 T 13-10-2018 BMD_1299 912053707eb4c43764cccd401be2d24a 508 Gene3D G3DSA:1.10.3210.10 311 505 7.2E-36 T 13-10-2018 BMD_4845 e7b7768ab48b74b91e12a126a7f80a4e 174 Gene3D G3DSA:1.20.144.10 55 170 2.2E-19 T 13-10-2018 BMD_4845 e7b7768ab48b74b91e12a126a7f80a4e 174 SUPERFAMILY SSF48317 10 172 2.62E-38 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BMD_4845 e7b7768ab48b74b91e12a126a7f80a4e 174 Pfam PF01569 PAP2 superfamily 64 171 1.4E-21 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_4845 e7b7768ab48b74b91e12a126a7f80a4e 174 SMART SM00014 61 169 5.2E-20 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_5091 10fe510e5a9a704ce73cf65000f4c2b5 465 PIRSF PIRSF006060 1 462 3.1E-77 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_5091 10fe510e5a9a704ce73cf65000f4c2b5 465 Gene3D G3DSA:1.20.1740.10 7 464 1.2E-66 T 13-10-2018 BMD_5091 10fe510e5a9a704ce73cf65000f4c2b5 465 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_5091 10fe510e5a9a704ce73cf65000f4c2b5 465 Pfam PF00324 Amino acid permease 15 456 8.1E-113 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_2624 5a6fd5c4391e09098fd94093dd4791ad 156 SUPERFAMILY SSF50475 22 88 1.13E-5 T 13-10-2018 BMD_2624 5a6fd5c4391e09098fd94093dd4791ad 156 Gene3D G3DSA:2.30.110.10 1 140 3.0E-5 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 Gene3D G3DSA:3.40.50.12780 1 406 1.5E-127 T 13-10-2018 BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 Gene3D G3DSA:3.30.300.310 409 510 1.7E-35 T 13-10-2018 BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 SUPERFAMILY SSF56801 3 508 2.22E-164 T 13-10-2018 BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 Pfam PF13193 AMP-binding enzyme C-terminal domain 422 496 4.7E-21 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 ProSitePatterns PS00455 Putative AMP-binding domain signature. 168 179 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 Pfam PF00501 AMP-binding enzyme 8 413 3.6E-115 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 PRINTS PR00154 AMP-binding signature 175 183 6.2E-5 T 13-10-2018 IPR020459 AMP-binding BMD_0612 ce5bece5135c605e87e693c4dfcf34f6 510 PRINTS PR00154 AMP-binding signature 163 174 6.2E-5 T 13-10-2018 IPR020459 AMP-binding BMD_2496 0a525b902579f04dbd2c1a0922c45b45 142 Pfam PF13673 Acetyltransferase (GNAT) domain 22 139 2.5E-20 T 13-10-2018 IPR000182 GNAT domain BMD_2496 0a525b902579f04dbd2c1a0922c45b45 142 SUPERFAMILY SSF55729 2 140 8.51E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2496 0a525b902579f04dbd2c1a0922c45b45 142 Gene3D G3DSA:3.40.630.30 1 141 4.0E-42 T 13-10-2018 BMD_3253 3eca8a73d6f476dc5ec11768752b4059 82 ProDom PD059966 COTJA SPORE PROTEIN-RELATED COAT-ASSOCIATED COTJAA JA 12 78 1.0E-22 T 13-10-2018 IPR020256 Spore coat protein CotJA BMD_3253 3eca8a73d6f476dc5ec11768752b4059 82 Pfam PF11007 Spore coat associated protein JA (CotJA) 35 67 7.1E-10 T 13-10-2018 IPR020256 Spore coat protein CotJA BMD_3239 b20d10ed9e372332387a37649e939dd7 159 Gene3D G3DSA:1.10.10.10 1 148 2.8E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3239 b20d10ed9e372332387a37649e939dd7 159 Pfam PF02082 Transcriptional regulator 3 83 7.3E-15 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_3239 b20d10ed9e372332387a37649e939dd7 159 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 3 134 1.9E-22 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_3239 b20d10ed9e372332387a37649e939dd7 159 SUPERFAMILY SSF46785 12 134 1.86E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3871 ddb8d158aeec302e7eda811dccf07df5 122 SUPERFAMILY SSF46785 9 118 5.03E-36 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3871 ddb8d158aeec302e7eda811dccf07df5 122 Gene3D G3DSA:1.10.10.10 4 121 1.8E-41 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3871 ddb8d158aeec302e7eda811dccf07df5 122 Pfam PF01638 HxlR-like helix-turn-helix 23 111 3.2E-36 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 Pfam PF00106 short chain dehydrogenase 3 194 9.4E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 SUPERFAMILY SSF51735 2 226 1.79E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2291 de041b48096204fb75f4eeebdeaaa498 256 Gene3D G3DSA:3.40.50.720 1 236 8.8E-43 T 13-10-2018 BMD_1776 0c2b25ef1596f09d42ace801a80b8f0e 90 Pfam PF04226 Transglycosylase associated protein 33 77 8.9E-10 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 4 510 50.152 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 Gene3D G3DSA:3.40.1450.10 77 312 1.3E-236 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 Gene3D G3DSA:3.40.720.10 5 509 1.3E-236 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 SUPERFAMILY SSF53649 3 509 1.22E-73 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 82 299 3.9E-86 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 SUPERFAMILY SSF64158 77 310 4.84E-93 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 PIRSF PIRSF001492 1 510 6.0E-207 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 4 509 1.6E-213 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BMD_5035 9bc1bf2351fa3a96a087a1668cb66e37 510 Pfam PF01676 Metalloenzyme superfamily 4 497 7.1E-78 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 PIRSF PIRSF000194 1 161 1.2E-64 T 13-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 Pfam PF00186 Dihydrofolate reductase 1 160 3.2E-67 T 13-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 PRINTS PR00070 Dihydrofolate reductase signature 13 23 1.3E-16 T 13-10-2018 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 PRINTS PR00070 Dihydrofolate reductase signature 92 106 1.3E-16 T 13-10-2018 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 PRINTS PR00070 Dihydrofolate reductase signature 27 35 1.3E-16 T 13-10-2018 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 PRINTS PR00070 Dihydrofolate reductase signature 40 51 1.3E-16 T 13-10-2018 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 Gene3D G3DSA:3.40.430.10 1 161 1.0E-64 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 SUPERFAMILY SSF53597 1 160 3.27E-61 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BMD_4044 2dca575878640219ccd7f28f9382d3a6 161 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 13-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 BMD_1956 7827b0666bbced16aa2f4019749b6fce 141 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 15 135 1.1E-9 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 BMD_1956 7827b0666bbced16aa2f4019749b6fce 141 SUPERFAMILY SSF52540 1 137 1.54E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1956 7827b0666bbced16aa2f4019749b6fce 141 Gene3D G3DSA:3.40.50.300 12 137 5.8E-9 T 13-10-2018 BMD_1004 ccbb188cf2760c13521c42dcaebcdc4a 149 Pfam PF14102 Capsule biosynthesis CapC 12 128 8.9E-40 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1004 ccbb188cf2760c13521c42dcaebcdc4a 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 88 101 2.3E-44 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1004 ccbb188cf2760c13521c42dcaebcdc4a 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 20 37 2.3E-44 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1004 ccbb188cf2760c13521c42dcaebcdc4a 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 66 80 2.3E-44 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1004 ccbb188cf2760c13521c42dcaebcdc4a 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 118 132 2.3E-44 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1004 ccbb188cf2760c13521c42dcaebcdc4a 149 PRINTS PR01759 Capsule biosynthesis protein CapC signature 2 17 2.3E-44 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1004 ccbb188cf2760c13521c42dcaebcdc4a 149 TIGRFAM TIGR04011 poly_gGlu_PgsC: poly-gamma-glutamate biosynthesis protein PgsC 10 139 3.1E-45 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_4307 5c1c82da7b0f7388e1d8835ca051689d 217 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 10 216 33.957 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 BMD_4307 5c1c82da7b0f7388e1d8835ca051689d 217 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 13 211 1.4E-48 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 BMD_4307 5c1c82da7b0f7388e1d8835ca051689d 217 SUPERFAMILY SSF51366 10 213 1.49E-47 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_4307 5c1c82da7b0f7388e1d8835ca051689d 217 Gene3D G3DSA:3.20.20.70 10 215 4.5E-54 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1626 36a30abd1b00e8cc51f23d0ff3f22d52 198 Gene3D G3DSA:3.40.50.620 63 151 3.4E-6 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_1626 36a30abd1b00e8cc51f23d0ff3f22d52 198 ProDom PD207074 TRANSMEMBRANE MEMBRANE UNCHARACTERIZED RC1356 RP875 39 128 4.0E-4 T 13-10-2018 BMD_1626 36a30abd1b00e8cc51f23d0ff3f22d52 198 Pfam PF02698 DUF218 domain 40 163 2.8E-23 T 13-10-2018 IPR003848 Domain of unknown function DUF218 BMD_3464 e262df1f6c052c259432c31e25bb5873 335 Gene3D G3DSA:2.20.150.10 20 116 9.6E-97 T 13-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 BMD_3464 e262df1f6c052c259432c31e25bb5873 335 Hamap MF_01668 5-dehydro-2-deoxygluconokinase [iolC]. 8 329 56.113 T 13-10-2018 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes GO:0016310|GO:0047590 KEGG: 00562+2.7.1.92 BMD_3464 e262df1f6c052c259432c31e25bb5873 335 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 269 282 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_3464 e262df1f6c052c259432c31e25bb5873 335 Gene3D G3DSA:3.40.1190.20 16 304 9.6E-97 T 13-10-2018 IPR029056 Ribokinase-like BMD_3464 e262df1f6c052c259432c31e25bb5873 335 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 12 325 4.5E-122 T 13-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 BMD_3464 e262df1f6c052c259432c31e25bb5873 335 Pfam PF00294 pfkB family carbohydrate kinase 14 317 5.8E-63 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_3464 e262df1f6c052c259432c31e25bb5873 335 SUPERFAMILY SSF53613 11 325 2.65E-73 T 13-10-2018 IPR029056 Ribokinase-like BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 Gene3D G3DSA:3.40.50.720 1 246 9.7E-92 T 13-10-2018 BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.7E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.7E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.7E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 2.7E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.7E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.7E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 185 1.7E-5 T 13-10-2018 BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 7 245 1.1E-109 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 244 1.3E-70 T 13-10-2018 BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 SUPERFAMILY SSF51735 3 246 2.99E-94 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 7.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 7.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4208 eaa7b05a9601e99329233d8297d0c67d 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 7.4E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4604 8fbf58fef41ed005d4809051a3b4fdd7 370 Gene3D G3DSA:2.30.30.280 214 277 8.3E-25 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BMD_4604 8fbf58fef41ed005d4809051a3b4fdd7 370 Gene3D G3DSA:3.40.50.620 1 213 2.9E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4604 8fbf58fef41ed005d4809051a3b4fdd7 370 Pfam PF03054 tRNA methyl transferase 9 357 2.3E-149 T 13-10-2018 BMD_4604 8fbf58fef41ed005d4809051a3b4fdd7 370 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 9 357 2.4E-142 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BMD_4604 8fbf58fef41ed005d4809051a3b4fdd7 370 Gene3D G3DSA:2.40.30.10 279 370 1.1E-29 T 13-10-2018 BMD_4604 8fbf58fef41ed005d4809051a3b4fdd7 370 SUPERFAMILY SSF52402 6 244 2.01E-58 T 13-10-2018 BMD_4604 8fbf58fef41ed005d4809051a3b4fdd7 370 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 8 358 40.899 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BMD_4575 45e380dee47ffcc332ab44ef5c6a1fb6 179 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 59 81 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BMD_4575 45e380dee47ffcc332ab44ef5c6a1fb6 179 Pfam PF01066 CDP-alcohol phosphatidyltransferase 18 81 1.0E-14 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BMD_4575 45e380dee47ffcc332ab44ef5c6a1fb6 179 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 23 174 4.5E-38 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 BMD_4575 45e380dee47ffcc332ab44ef5c6a1fb6 179 Gene3D G3DSA:1.20.120.1760 7 178 5.9E-12 T 13-10-2018 BMD_1119 306ba458c0c39169110d0ade5698df13 280 Gene3D G3DSA:3.40.50.2000 1 266 1.6E-45 T 13-10-2018 BMD_1119 306ba458c0c39169110d0ade5698df13 280 Gene3D G3DSA:3.40.50.2000 86 257 1.6E-45 T 13-10-2018 BMD_1119 306ba458c0c39169110d0ade5698df13 280 Pfam PF00534 Glycosyl transferases group 1 99 241 4.3E-27 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_1119 306ba458c0c39169110d0ade5698df13 280 SUPERFAMILY SSF53756 2 271 4.89E-54 T 13-10-2018 BMD_3202 f30a832d78375f23308e323e567f89dc 108 Pfam PF00893 Small Multidrug Resistance protein 3 94 2.3E-27 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BMD_3202 f30a832d78375f23308e323e567f89dc 108 SUPERFAMILY SSF103481 5 105 1.96E-20 T 13-10-2018 BMD_3202 f30a832d78375f23308e323e567f89dc 108 Gene3D G3DSA:1.10.3730.20 1 108 3.9E-36 T 13-10-2018 BMD_3189 744aa343d84aabe096e64b9d713df1e3 136 Pfam PF02600 Disulfide bond formation protein DsbB 6 128 1.1E-11 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 BMD_3189 744aa343d84aabe096e64b9d713df1e3 136 SUPERFAMILY SSF158442 6 129 9.55E-31 T 13-10-2018 IPR023380 DsbB-like superfamily BMD_3189 744aa343d84aabe096e64b9d713df1e3 136 PIRSF PIRSF036659 1 136 1.4E-53 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC BMD_3189 744aa343d84aabe096e64b9d713df1e3 136 Hamap MF_00287 Probable disulfide formation protein [bdbC]. 2 133 22.118 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC BMD_3189 744aa343d84aabe096e64b9d713df1e3 136 Gene3D G3DSA:1.20.1550.10 2 108 4.6E-11 T 13-10-2018 IPR023380 DsbB-like superfamily BMD_1714 a9d87ae789d5177d76fbaafc1f633a75 111 Pfam PF03734 L,D-transpeptidase catalytic domain 3 109 1.7E-23 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BMD_1714 a9d87ae789d5177d76fbaafc1f633a75 111 Gene3D G3DSA:2.40.440.10 1 111 9.6E-44 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_1714 a9d87ae789d5177d76fbaafc1f633a75 111 SUPERFAMILY SSF141523 4 110 1.57E-34 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 412 5.0E-138 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 SMART SM00984 314 416 1.3E-41 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 Gene3D G3DSA:3.40.50.720 230 444 6.7E-70 T 13-10-2018 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 PIRSF PIRSF500134 2 434 3.0E-175 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 199 291 3.2E-37 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 SUPERFAMILY SSF52413 302 426 1.57E-33 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 Gene3D G3DSA:1.20.5.100 198 229 6.0E-18 T 13-10-2018 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 PIRSF PIRSF000124 2 431 6.3E-140 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 184 8.9E-64 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 SUPERFAMILY SSF48179 199 294 4.25E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 Gene3D G3DSA:3.40.50.720 1 197 3.9E-75 T 13-10-2018 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 314 415 2.8E-28 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_1122 0d775cb9601afa0dfd0ad12eb3faf423 445 SUPERFAMILY SSF51735 3 192 1.92E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4516 9feed6d25a9a63ae8cb96ef865adae75 137 Gene3D G3DSA:1.10.10.10 1 83 7.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4516 9feed6d25a9a63ae8cb96ef865adae75 137 Pfam PF01475 Ferric uptake regulator family 13 129 1.0E-29 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BMD_4516 9feed6d25a9a63ae8cb96ef865adae75 137 Gene3D G3DSA:3.30.1490.190 85 136 1.2E-12 T 13-10-2018 BMD_4516 9feed6d25a9a63ae8cb96ef865adae75 137 SUPERFAMILY SSF46785 5 132 1.58E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 TIGRFAM TIGR02404 trehalos_R_Bsub: trehalose operon repressor 5 236 1.5E-96 T 13-10-2018 IPR012770 Trehalose operon transcriptional repressor BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 68 1.4E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 SMART SM00866 90 229 2.2E-26 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 SUPERFAMILY SSF46785 4 72 1.25E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 SMART SM00345 9 68 2.3E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 SUPERFAMILY SSF64288 74 234 1.73E-42 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 Pfam PF07702 UTRA domain 92 229 1.4E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 Gene3D G3DSA:1.10.10.10 5 71 5.9E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 4.0E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 4.0E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BMD_0959 d115b29be032ee15e941ce79b411a7cc 238 Gene3D G3DSA:3.40.1410.10 77 232 2.7E-32 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BMD_0513 e5bc38d358a4462065989fe71a95aaf7 175 Gene3D G3DSA:3.40.630.30 5 169 8.1E-30 T 13-10-2018 BMD_0513 e5bc38d358a4462065989fe71a95aaf7 175 SUPERFAMILY SSF55729 6 154 9.83E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0513 e5bc38d358a4462065989fe71a95aaf7 175 Pfam PF00583 Acetyltransferase (GNAT) family 40 150 5.2E-16 T 13-10-2018 IPR000182 GNAT domain BMD_2735 2f566c79f52065db6c873ffe55cc8be7 710 Pfam PF14345 GDYXXLXY protein 564 707 8.6E-34 T 13-10-2018 IPR025833 GDYXXLXY protein BMD_2735 2f566c79f52065db6c873ffe55cc8be7 710 Pfam PF09925 Predicted membrane protein (DUF2157) 8 113 2.0E-17 T 13-10-2018 IPR018677 Domain of unknown function DUF2157 BMD_2869 f80c6769850126deb1c47b2db9445101 137 PIRSF PIRSF030042 1 135 1.4E-50 T 13-10-2018 IPR016942 Uncharacterised conserved protein UCP030042 BMD_2869 f80c6769850126deb1c47b2db9445101 137 Pfam PF14340 Domain of unknown function (DUF4395) 3 126 7.7E-24 T 13-10-2018 IPR025508 Domain of unknown function DUF4395 BMD_0897 e5daf4cb022682a479a34ed1a3bb5529 76 SUPERFAMILY SSF50037 4 74 6.1E-15 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal BMD_0897 e5daf4cb022682a479a34ed1a3bb5529 76 Gene3D G3DSA:2.30.30.90 2 76 2.8E-17 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain BMD_0897 e5daf4cb022682a479a34ed1a3bb5529 76 Pfam PF04023 FeoA domain 2 74 1.7E-13 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BMD_0897 e5daf4cb022682a479a34ed1a3bb5529 76 SMART SM00899 2 75 1.7E-14 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BMD_0657 5c534915b63d15573a0102a1e3427665 510 Gene3D G3DSA:3.50.50.60 2 90 1.2E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0657 5c534915b63d15573a0102a1e3427665 510 Gene3D G3DSA:3.50.50.60 201 324 2.6E-17 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0657 5c534915b63d15573a0102a1e3427665 510 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 5 492 1.6E-148 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 BMD_0657 5c534915b63d15573a0102a1e3427665 510 Pfam PF01593 Flavin containing amine oxidoreductase 13 475 2.1E-21 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_0657 5c534915b63d15573a0102a1e3427665 510 ProSitePatterns PS00982 Bacterial-type phytoene dehydrogenase signature. 460 480 - T 13-10-2018 IPR008150 Phytoene dehydrogenase, bacterial-type, conserved site BMD_0657 5c534915b63d15573a0102a1e3427665 510 SUPERFAMILY SSF51905 1 490 8.88E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0657 5c534915b63d15573a0102a1e3427665 510 PRINTS PR00419 Adrenodoxin reductase family signature 27 40 4.8E-8 T 13-10-2018 BMD_0657 5c534915b63d15573a0102a1e3427665 510 PRINTS PR00419 Adrenodoxin reductase family signature 4 26 4.8E-8 T 13-10-2018 BMD_3375 f223c2b56ba2718bc6490e23c8fb7836 208 SUPERFAMILY SSF55469 4 207 3.8E-58 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_3375 f223c2b56ba2718bc6490e23c8fb7836 208 Pfam PF00881 Nitroreductase family 11 188 1.3E-31 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_3375 f223c2b56ba2718bc6490e23c8fb7836 208 Gene3D G3DSA:3.40.109.10 1 208 1.8E-59 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_0363 ea14e16aa231d19eb7c00c8e0b973eec 361 SUPERFAMILY SSF56512 3 360 2.75E-169 T 13-10-2018 IPR036119 Nitric oxide synthase, N-terminal domain superfamily GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 BMD_0363 ea14e16aa231d19eb7c00c8e0b973eec 361 Gene3D G3DSA:3.90.440.10 82 192 1.0E-155 T 13-10-2018 BMD_0363 ea14e16aa231d19eb7c00c8e0b973eec 361 Gene3D G3DSA:3.90.1230.10 193 299 1.0E-155 T 13-10-2018 BMD_0363 ea14e16aa231d19eb7c00c8e0b973eec 361 Gene3D G3DSA:3.90.340.10 4 354 1.0E-155 T 13-10-2018 BMD_0363 ea14e16aa231d19eb7c00c8e0b973eec 361 PIRSF PIRSF037219 1 361 2.5E-186 T 13-10-2018 IPR017142 Nitric oxide synthase, oxygenase subunit GO:0004517|GO:0006809|GO:0020037 KEGG: 00220+1.14.14.47|KEGG: 00330+1.14.14.47 BMD_0363 ea14e16aa231d19eb7c00c8e0b973eec 361 Pfam PF02898 Nitric oxide synthase, oxygenase domain 3 360 5.2E-171 T 13-10-2018 IPR004030 Nitric oxide synthase, N-terminal GO:0004517|GO:0006809|GO:0055114 Reactome: R-HSA-1222556|Reactome: R-HSA-392154 BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 1.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 1.8E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 Gene3D G3DSA:3.40.50.720 1 279 2.6E-77 T 13-10-2018 BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 Pfam PF00106 short chain dehydrogenase 4 204 2.4E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.5E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 2.5E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.5E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2832 88e198ef200019bc8c4d8ed0fbe99224 279 SUPERFAMILY SSF51735 2 254 1.59E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1489 fcd9f256cc8c61649bbd7d571e156c42 251 Gene3D G3DSA:3.20.20.70 1 251 9.1E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1489 fcd9f256cc8c61649bbd7d571e156c42 251 Pfam PF07071 KDGP aldolase 9 227 3.4E-101 T 13-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BMD_1489 fcd9f256cc8c61649bbd7d571e156c42 251 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 9 245 7.6E-112 T 13-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BMD_3978 c44439745a47eecdda28d31c28912f39 225 Pfam PF00877 NlpC/P60 family 121 223 7.1E-32 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_3978 c44439745a47eecdda28d31c28912f39 225 Gene3D G3DSA:3.90.1720.10 102 225 9.6E-42 T 13-10-2018 BMD_3978 c44439745a47eecdda28d31c28912f39 225 Gene3D G3DSA:1.10.101.10 27 95 1.7E-21 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_3978 c44439745a47eecdda28d31c28912f39 225 SUPERFAMILY SSF54001 106 225 2.31E-40 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_3978 c44439745a47eecdda28d31c28912f39 225 Pfam PF01471 Putative peptidoglycan binding domain 37 92 3.6E-17 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_3978 c44439745a47eecdda28d31c28912f39 225 SUPERFAMILY SSF47090 28 95 1.49E-20 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 235 8.9E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 SUPERFAMILY SSF52172 3 128 6.4E-35 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 Gene3D G3DSA:3.40.50.2300 3 131 6.9E-31 T 13-10-2018 BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 Gene3D G3DSA:1.10.10.10 133 240 1.5E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 Pfam PF00072 Response regulator receiver domain 6 115 3.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 SMART SM00862 159 235 1.9E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 SMART SM00448 4 115 1.0E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0322 c1ff21d39a255ec87101e39570eb3030 241 SUPERFAMILY SSF46894 133 236 7.09E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_3247 198ffd53579b1404e58689befff75bfd 319 PIRSF PIRSF016838 1 315 2.5E-17 T 13-10-2018 IPR028349 Protein PafC BMD_3247 198ffd53579b1404e58689befff75bfd 319 Gene3D G3DSA:1.10.10.10 1 63 1.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3247 198ffd53579b1404e58689befff75bfd 319 Pfam PF08279 HTH domain 10 61 1.2E-13 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_3247 198ffd53579b1404e58689befff75bfd 319 SUPERFAMILY SSF46785 4 63 1.34E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3247 198ffd53579b1404e58689befff75bfd 319 Pfam PF13280 WYL domain 139 306 3.4E-23 T 13-10-2018 IPR026881 WYL domain BMD_1101 5e126dfbd62cbd4a4fcf90ab248ce370 234 PRINTS PR00173 Glutamate-aspartate symporter signature 19 39 3.9E-5 T 13-10-2018 BMD_1101 5e126dfbd62cbd4a4fcf90ab248ce370 234 PRINTS PR00173 Glutamate-aspartate symporter signature 191 210 3.9E-5 T 13-10-2018 BMD_1101 5e126dfbd62cbd4a4fcf90ab248ce370 234 Pfam PF06149 Protein of unknown function (DUF969) 1 216 1.6E-86 T 13-10-2018 IPR010374 Protein of unknown function DUF969 BMD_0048 e4c0d40da134a962a15f10b3dda311f1 330 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 17 197 3.1E-61 T 13-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_0048 e4c0d40da134a962a15f10b3dda311f1 330 SUPERFAMILY SSF52540 11 194 2.66E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0048 e4c0d40da134a962a15f10b3dda311f1 330 Pfam PF13177 DNA polymerase III, delta subunit 12 170 5.3E-58 T 13-10-2018 BMD_0048 e4c0d40da134a962a15f10b3dda311f1 330 Gene3D G3DSA:3.40.50.300 8 169 2.9E-52 T 13-10-2018 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 476 492 7.3E-32 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 387 403 7.3E-32 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 351 371 7.3E-32 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 408 419 7.3E-32 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 Pfam PF07504 Fungalysin/Thermolysin Propeptide Motif 86 137 4.7E-13 T 13-10-2018 IPR011096 FTP domain BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 399 561 1.5E-63 T 13-10-2018 IPR001570 Peptidase M4, C-terminal GO:0004222 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 253 396 3.1E-54 T 13-10-2018 IPR013856 Peptidase M4 domain GO:0004222 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 Gene3D G3DSA:1.10.390.10 401 561 6.3E-73 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 Gene3D G3DSA:3.10.170.10 251 400 2.5E-66 T 13-10-2018 BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 Pfam PF03413 Peptidase propeptide and YPEB domain 154 222 2.7E-9 T 13-10-2018 IPR025711 PepSY domain BMD_2285 27f7bc904e34430738886ccb94c6eefb 562 SUPERFAMILY SSF55486 247 561 1.19E-107 T 13-10-2018 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 SUPERFAMILY SSF53244 335 488 1.7E-49 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 486 36.481 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 SUPERFAMILY SSF53623 100 333 5.63E-76 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 Pfam PF02875 Mur ligase family, glutamate ligase domain 335 419 2.9E-24 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 24 486 7.9E-175 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 Gene3D G3DSA:3.90.190.20 340 490 1.2E-61 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 Pfam PF01225 Mur ligase family, catalytic domain 26 97 1.6E-14 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 Gene3D G3DSA:3.40.1390.10 5 99 3.1E-29 T 13-10-2018 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 Gene3D G3DSA:3.40.1190.10 100 339 6.9E-89 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 SUPERFAMILY SSF63418 1 100 3.14E-26 T 13-10-2018 IPR035911 MurE/MurF, N-terminal BMD_4267 a3bcee983ba93a8c883408254a7cc62a 490 Pfam PF08245 Mur ligase middle domain 109 314 3.7E-57 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_0658 6f929a7f4e6332e31923603288fb028a 485 SUPERFAMILY SSF51905 1 474 7.22E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0658 6f929a7f4e6332e31923603288fb028a 485 Pfam PF01593 Flavin containing amine oxidoreductase 10 465 1.7E-31 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_0658 6f929a7f4e6332e31923603288fb028a 485 PRINTS PR00419 Adrenodoxin reductase family signature 2 24 6.0E-5 T 13-10-2018 BMD_0658 6f929a7f4e6332e31923603288fb028a 485 PRINTS PR00419 Adrenodoxin reductase family signature 25 38 6.0E-5 T 13-10-2018 BMD_0658 6f929a7f4e6332e31923603288fb028a 485 Gene3D G3DSA:3.50.50.60 5 305 4.5E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0658 6f929a7f4e6332e31923603288fb028a 485 Gene3D G3DSA:3.90.660.50 83 403 4.5E-31 T 13-10-2018 BMD_0658 6f929a7f4e6332e31923603288fb028a 485 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 4 480 8.0E-107 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 BMD_5260 6f97f2d40b9ddad62a062c05ddf1a594 297 SUPERFAMILY SSF82689 186 283 6.67E-16 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BMD_5260 6f97f2d40b9ddad62a062c05ddf1a594 297 Gene3D G3DSA:3.30.70.100 185 272 1.9E-21 T 13-10-2018 BMD_5260 6f97f2d40b9ddad62a062c05ddf1a594 297 Pfam PF00924 Mechanosensitive ion channel 76 273 6.8E-48 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BMD_5260 6f97f2d40b9ddad62a062c05ddf1a594 297 Gene3D G3DSA:2.30.30.60 135 183 5.8E-22 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BMD_5260 6f97f2d40b9ddad62a062c05ddf1a594 297 SUPERFAMILY SSF82861 28 118 7.06E-15 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BMD_5260 6f97f2d40b9ddad62a062c05ddf1a594 297 SUPERFAMILY SSF50182 119 180 1.24E-15 T 13-10-2018 IPR010920 LSM domain superfamily BMD_4569 279246105b058fa07685427c8b396d07 99 SMART SM01103 2 85 8.0E-45 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BMD_4569 279246105b058fa07685427c8b396d07 99 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 2 96 2.0E-40 T 13-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 BMD_4569 279246105b058fa07685427c8b396d07 99 Gene3D G3DSA:3.30.110.60 1 99 5.7E-38 T 13-10-2018 IPR035920 YhbY-like superfamily BMD_4569 279246105b058fa07685427c8b396d07 99 Pfam PF01985 CRS1 / YhbY (CRM) domain 2 85 1.6E-22 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BMD_4569 279246105b058fa07685427c8b396d07 99 SUPERFAMILY SSF75471 1 94 8.24E-32 T 13-10-2018 IPR035920 YhbY-like superfamily BMD_4569 279246105b058fa07685427c8b396d07 99 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 8 96 4.0E-36 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BMD_0103 3236f6c09e7f69299631a96417e30b44 180 SUPERFAMILY SSF46600 134 172 5.89E-6 T 13-10-2018 IPR036876 UVR domain superfamily BMD_0103 3236f6c09e7f69299631a96417e30b44 180 Pfam PF02151 UvrB/uvrC motif 136 170 3.8E-6 T 13-10-2018 IPR001943 UVR domain GO:0005515 BMD_0103 3236f6c09e7f69299631a96417e30b44 180 PIRSF PIRSF015034 1 179 1.0E-68 T 13-10-2018 IPR025542 YacH protein BMD_1014 a7f52ce4ab9dccb66592edfe1222a446 188 ProSitePatterns PS00893 Nudix box signature. 64 85 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BMD_1014 a7f52ce4ab9dccb66592edfe1222a446 188 PRINTS PR00502 NUDIX hydrolase family signature 73 88 3.4E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_1014 a7f52ce4ab9dccb66592edfe1222a446 188 PRINTS PR00502 NUDIX hydrolase family signature 59 73 3.4E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_1014 a7f52ce4ab9dccb66592edfe1222a446 188 Gene3D G3DSA:3.90.79.10 19 167 2.9E-24 T 13-10-2018 BMD_1014 a7f52ce4ab9dccb66592edfe1222a446 188 Pfam PF00293 NUDIX domain 29 153 4.3E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_1014 a7f52ce4ab9dccb66592edfe1222a446 188 SUPERFAMILY SSF55811 31 164 1.27E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_0256 e9b27b73c80245a4afc8943c86c6c03f 61 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 61 17.734 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BMD_0256 e9b27b73c80245a4afc8943c86c6c03f 61 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 2 46 3.9E-20 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BMD_0256 e9b27b73c80245a4afc8943c86c6c03f 61 Pfam PF02416 mttA/Hcf106 family 3 54 3.3E-22 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 SUPERFAMILY SSF55874 267 409 4.32E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 SMART SM00387 301 411 6.6E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 308 410 1.4E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 Gene3D G3DSA:3.30.565.10 262 412 1.1E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 338 352 2.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 366 2.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 408 2.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0803 a9b05b62379f6459fab6ea3289f21f84 416 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 390 2.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3251 26969424930fa60ce22ba159e1c376ec 189 Pfam PF05067 Manganese containing catalase 1 183 3.7E-77 T 13-10-2018 IPR007760 Manganese catalase BMD_3251 26969424930fa60ce22ba159e1c376ec 189 SUPERFAMILY SSF47240 1 186 9.49E-69 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_3251 26969424930fa60ce22ba159e1c376ec 189 Gene3D G3DSA:1.20.1260.10 1 184 1.1E-64 T 13-10-2018 IPR012347 Ferritin-like BMD_0991 99ed15fafc708e2c5fd76768b49e9a1a 147 Gene3D G3DSA:3.40.30.10 1 146 1.2E-34 T 13-10-2018 BMD_0991 99ed15fafc708e2c5fd76768b49e9a1a 147 SUPERFAMILY SSF52833 2 142 1.45E-30 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_0991 99ed15fafc708e2c5fd76768b49e9a1a 147 Pfam PF00578 AhpC/TSA family 5 125 3.0E-12 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_3723 05f857becb244cd3f43c0fa22f42d187 409 Gene3D G3DSA:3.50.50.60 1 388 8.2E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3723 05f857becb244cd3f43c0fa22f42d187 409 Pfam PF01494 FAD binding domain 5 328 1.3E-18 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 BMD_3723 05f857becb244cd3f43c0fa22f42d187 409 SUPERFAMILY SSF51905 5 348 7.72E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3723 05f857becb244cd3f43c0fa22f42d187 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 9.1E-7 T 13-10-2018 BMD_3723 05f857becb244cd3f43c0fa22f42d187 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 9.1E-7 T 13-10-2018 BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 Pfam PF04397 LytTr DNA-binding domain 149 244 6.9E-31 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 Gene3D G3DSA:3.40.50.2300 1 122 5.4E-32 T 13-10-2018 BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 SMART SM00850 148 245 2.8E-36 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 Gene3D G3DSA:2.20.25.10 209 246 1.8E-9 T 13-10-2018 BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 Pfam PF00072 Response regulator receiver domain 4 113 1.4E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 Gene3D G3DSA:2.40.50.40 139 208 1.7E-14 T 13-10-2018 BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 SUPERFAMILY SSF52172 1 125 1.71E-30 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0775 5f4434b2861889ee64c35abf4ba2ae1a 246 SMART SM00448 2 113 1.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1515 33bdcda7b471d500ca7408497aade24c 157 Pfam PF03061 Thioesterase superfamily 56 140 1.8E-5 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_1515 33bdcda7b471d500ca7408497aade24c 157 Gene3D G3DSA:3.10.129.10 3 156 4.4E-36 T 13-10-2018 BMD_1515 33bdcda7b471d500ca7408497aade24c 157 SUPERFAMILY SSF54637 5 150 3.32E-25 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_5257 afffd8747d4c35bab352f887818740f5 95 ProSitePatterns PS01048 Ribosomal protein S6 signature. 44 53 - T 13-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 BMD_5257 afffd8747d4c35bab352f887818740f5 95 Gene3D G3DSA:3.30.70.60 1 95 9.7E-36 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BMD_5257 afffd8747d4c35bab352f887818740f5 95 SUPERFAMILY SSF54995 1 94 6.41E-35 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5257 afffd8747d4c35bab352f887818740f5 95 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 1.3E-32 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5257 afffd8747d4c35bab352f887818740f5 95 Pfam PF01250 Ribosomal protein S6 3 92 2.0E-30 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5257 afffd8747d4c35bab352f887818740f5 95 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 23.983 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 BMD_0650 8f163735b48ac5cbac85def31c4002b5 238 Pfam PF10737 Spore germination protein GerPC 25 93 1.8E-22 T 13-10-2018 IPR019673 Spore germination protein GerPC BMD_0650 8f163735b48ac5cbac85def31c4002b5 238 Pfam PF10737 Spore germination protein GerPC 128 228 4.3E-17 T 13-10-2018 IPR019673 Spore germination protein GerPC BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 235 259 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 306 317 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 98 120 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 277 304 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 213 232 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 139 159 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 339 350 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 162 181 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 PRINTS PR00688 Xylose isomerase signature 186 207 2.0E-99 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 SUPERFAMILY SSF51658 11 444 3.07E-175 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_1858 7152da2cb6c674423be6180a824331ef 445 Hamap MF_00455 Xylose isomerase [xylA]. 18 442 55.771 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 12 442 9.3E-221 T 13-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BMD_1858 7152da2cb6c674423be6180a824331ef 445 Pfam PF01261 Xylose isomerase-like TIM barrel 153 290 4.7E-7 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_1858 7152da2cb6c674423be6180a824331ef 445 Gene3D G3DSA:3.20.20.150 10 445 6.3E-188 T 13-10-2018 BMD_3605 ff5b465e7b6ea98e6442c1dbd884f201 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 145 6.0E-57 T 13-10-2018 BMD_3605 ff5b465e7b6ea98e6442c1dbd884f201 149 PIRSF PIRSF001399 1 148 2.3E-58 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_3605 ff5b465e7b6ea98e6442c1dbd884f201 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 63.343 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_3605 ff5b465e7b6ea98e6442c1dbd884f201 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 1.1E-56 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_3605 ff5b465e7b6ea98e6442c1dbd884f201 149 Pfam PF01220 Dehydroquinase class II 4 141 9.9E-56 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_3605 ff5b465e7b6ea98e6442c1dbd884f201 149 SUPERFAMILY SSF52304 4 147 1.7E-56 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_3605 ff5b465e7b6ea98e6442c1dbd884f201 149 Gene3D G3DSA:3.40.50.9100 1 149 4.0E-61 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BMD_3844 dfd821e3c929eeef53664a5cc9432137 320 Pfam PF00248 Aldo/keto reductase family 15 319 1.5E-81 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_3844 dfd821e3c929eeef53664a5cc9432137 320 Gene3D G3DSA:3.20.20.100 1 320 1.7E-123 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_3844 dfd821e3c929eeef53664a5cc9432137 320 SUPERFAMILY SSF51430 1 319 1.31E-104 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 Pfam PF01842 ACT domain 22 75 1.5E-10 T 13-10-2018 IPR002912 ACT domain BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 21 299 2.8E-127 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 22 48 5.1E-61 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 105 127 5.1E-61 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 273 298 5.1E-61 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 55 67 5.1E-61 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 251 273 5.1E-61 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 127 154 5.1E-61 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 PIRSF PIRSF036480 17 300 3.4E-113 T 13-10-2018 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 SUPERFAMILY SSF55021 21 100 5.73E-18 T 13-10-2018 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 Pfam PF00551 Formyl transferase 104 281 1.1E-40 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 Gene3D G3DSA:3.30.70.260 16 102 1.5E-26 T 13-10-2018 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 SUPERFAMILY SSF53328 105 300 1.57E-60 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 17 299 46.601 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BMD_4046 a50b1e296b9a7dde676565573dd93fa6 300 Gene3D G3DSA:3.40.50.170 104 300 1.1E-71 T 13-10-2018 BMD_0412 4add415c8de3cafd66ab87db5c37e6f2 337 SMART SM00382 50 234 4.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0412 4add415c8de3cafd66ab87db5c37e6f2 337 Gene3D G3DSA:3.40.50.300 8 278 1.0E-60 T 13-10-2018 BMD_0412 4add415c8de3cafd66ab87db5c37e6f2 337 Pfam PF00005 ABC transporter 42 185 8.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0412 4add415c8de3cafd66ab87db5c37e6f2 337 SUPERFAMILY SSF52540 36 252 9.87E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1136 92399a77efe4c00412a1a07f050c4bdb 452 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 14 451 1.7E-151 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_1136 92399a77efe4c00412a1a07f050c4bdb 452 PIRSF PIRSF002746 8 452 2.8E-159 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_1136 92399a77efe4c00412a1a07f050c4bdb 452 Pfam PF02447 GntP family permease 14 449 1.8E-165 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_1844 c1b50738595f5d71542bfbd97b1f0e87 483 Gene3D G3DSA:3.40.309.10 262 441 2.2E-160 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_1844 c1b50738595f5d71542bfbd97b1f0e87 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 257 264 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_1844 c1b50738595f5d71542bfbd97b1f0e87 483 Gene3D G3DSA:3.40.605.10 27 259 2.2E-160 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_1844 c1b50738595f5d71542bfbd97b1f0e87 483 Pfam PF00171 Aldehyde dehydrogenase family 19 476 2.3E-157 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_1844 c1b50738595f5d71542bfbd97b1f0e87 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 285 296 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_1844 c1b50738595f5d71542bfbd97b1f0e87 483 SUPERFAMILY SSF53720 9 480 2.75E-148 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 SUPERFAMILY SSF55594 1 83 3.79E-29 T 13-10-2018 IPR035895 HPr-like superfamily BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 PRINTS PR00107 Phosphocarrier protein signature 38 53 8.0E-27 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 PRINTS PR00107 Phosphocarrier protein signature 53 70 8.0E-27 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 PRINTS PR00107 Phosphocarrier protein signature 13 29 8.0E-27 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 Pfam PF00381 PTS HPr component phosphorylation site 3 81 7.6E-31 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 Gene3D G3DSA:3.30.1340.10 1 88 7.6E-39 T 13-10-2018 IPR035895 HPr-like superfamily BMD_1283 632c617b0209ea37317565c3bfb7c5b9 88 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 5.1E-34 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like BMD_1368 6597cc921e5f2045e64ca99133abe5ab 375 Gene3D G3DSA:3.40.50.2000 22 369 3.7E-119 T 13-10-2018 BMD_1368 6597cc921e5f2045e64ca99133abe5ab 375 TIGRFAM TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA 3 373 4.6E-175 T 13-10-2018 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA GO:0016757|GO:0071793 BMD_1368 6597cc921e5f2045e64ca99133abe5ab 375 Pfam PF13439 Glycosyltransferase Family 4 13 177 3.5E-25 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BMD_1368 6597cc921e5f2045e64ca99133abe5ab 375 Pfam PF00534 Glycosyl transferases group 1 190 347 2.2E-40 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_1368 6597cc921e5f2045e64ca99133abe5ab 375 Gene3D G3DSA:3.40.50.2000 175 356 3.7E-119 T 13-10-2018 BMD_1368 6597cc921e5f2045e64ca99133abe5ab 375 SUPERFAMILY SSF53756 9 373 7.07E-84 T 13-10-2018 BMD_1351 a08568480ca692366841ae41d43e775c 300 Pfam PF02628 Cytochrome oxidase assembly protein 8 287 1.3E-35 T 13-10-2018 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 Reactome: R-HSA-189451 BMD_1351 a08568480ca692366841ae41d43e775c 300 Hamap MF_01664 Heme A synthase [ctaA]. 1 300 28.849 T 13-10-2018 IPR023755 Heme A synthase, type 1 GO:0006784|GO:0016020|GO:0016627|GO:0055114 BMD_0508 2e208fe8de2e0b1063821b49df16c394 317 Gene3D G3DSA:3.40.50.150 155 317 1.8E-18 T 13-10-2018 BMD_0508 2e208fe8de2e0b1063821b49df16c394 317 Pfam PF01170 Putative RNA methylase family UPF0020 158 261 2.5E-7 T 13-10-2018 IPR000241 Putative RNA methylase domain BMD_0508 2e208fe8de2e0b1063821b49df16c394 317 SUPERFAMILY SSF53335 158 268 1.22E-17 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0700 1d5b4a23b85089f692c151c926ce1446 327 SMART SM00382 45 237 5.6E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0700 1d5b4a23b85089f692c151c926ce1446 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 304 2.0E-18 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_0700 1d5b4a23b85089f692c151c926ce1446 327 Pfam PF00005 ABC transporter 37 187 3.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0700 1d5b4a23b85089f692c151c926ce1446 327 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0700 1d5b4a23b85089f692c151c926ce1446 327 Gene3D G3DSA:3.40.50.300 7 327 3.5E-102 T 13-10-2018 BMD_0700 1d5b4a23b85089f692c151c926ce1446 327 SUPERFAMILY SSF52540 9 259 5.44E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0700 1d5b4a23b85089f692c151c926ce1446 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 324 3.2E-30 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_2602 93df6aba2b930194e45028e8c6a171fb 367 SUPERFAMILY SSF111342 5 288 1.96E-86 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BMD_2602 93df6aba2b930194e45028e8c6a171fb 367 Gene3D G3DSA:3.30.2110.10 13 185 3.7E-50 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BMD_2602 93df6aba2b930194e45028e8c6a171fb 367 PIRSF PIRSF026782 7 367 1.3E-129 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BMD_2602 93df6aba2b930194e45028e8c6a171fb 367 Pfam PF01888 CbiD 11 271 3.3E-96 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BMD_2602 93df6aba2b930194e45028e8c6a171fb 367 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 18 360 2.5E-67 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BMD_2602 93df6aba2b930194e45028e8c6a171fb 367 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 11 362 29.649 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BMD_0444 c2c5b6ab8ebfcccda1f4f95adc7d92e7 631 PIRSF PIRSF000549 1 631 3.9E-262 T 13-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 BMD_0444 c2c5b6ab8ebfcccda1f4f95adc7d92e7 631 SMART SM00763 21 371 1.9E-194 T 13-10-2018 IPR013153 PrkA AAA domain BMD_0444 c2c5b6ab8ebfcccda1f4f95adc7d92e7 631 Pfam PF06798 PrkA serine protein kinase C-terminal domain 375 624 7.1E-93 T 13-10-2018 IPR010650 PrkA C-terminal domain BMD_0444 c2c5b6ab8ebfcccda1f4f95adc7d92e7 631 Gene3D G3DSA:3.40.50.300 87 319 1.6E-7 T 13-10-2018 BMD_0444 c2c5b6ab8ebfcccda1f4f95adc7d92e7 631 SUPERFAMILY SSF52540 68 444 1.9E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0444 c2c5b6ab8ebfcccda1f4f95adc7d92e7 631 Pfam PF08298 PrkA AAA domain 22 370 6.3E-150 T 13-10-2018 IPR013153 PrkA AAA domain BMD_0466 5e22ae44dde4ed2e4d811973b9065abf 245 Gene3D G3DSA:3.20.20.190 2 244 1.1E-74 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_0466 5e22ae44dde4ed2e4d811973b9065abf 245 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 10 236 1.1E-43 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BMD_0466 5e22ae44dde4ed2e4d811973b9065abf 245 SUPERFAMILY SSF51695 7 239 1.23E-68 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 256 1.3E-81 T 13-10-2018 BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 PIRSF PIRSF000094 4 259 2.4E-99 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 SUPERFAMILY SSF51735 8 258 1.7E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 1.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 1.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 1.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 1.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 Gene3D G3DSA:1.10.8.400 206 259 2.8E-16 T 13-10-2018 BMD_3353 385578c8d16e48afa5a3674e3a43ada4 259 Gene3D G3DSA:3.40.50.720 11 205 1.1E-38 T 13-10-2018 BMD_3140 dddfa92f4715e87fa9ea4ddaad4e90bc 240 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 72 229 5.0E-25 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain BMD_3140 dddfa92f4715e87fa9ea4ddaad4e90bc 240 SUPERFAMILY SSF52266 48 237 1.83E-44 T 13-10-2018 BMD_3140 dddfa92f4715e87fa9ea4ddaad4e90bc 240 Gene3D G3DSA:3.40.50.1110 30 240 3.2E-47 T 13-10-2018 IPR036514 SGNH hydrolase superfamily BMD_2520 c2d505e30ef49e501eba1bf28f15e660 237 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 8 235 6.4E-81 T 13-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 BMD_2520 c2d505e30ef49e501eba1bf28f15e660 237 Gene3D G3DSA:1.10.30.40 3 53 6.8E-16 T 13-10-2018 BMD_2520 c2d505e30ef49e501eba1bf28f15e660 237 PIRSF PIRSF018982 1 237 3.2E-86 T 13-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 BMD_2520 c2d505e30ef49e501eba1bf28f15e660 237 Gene3D G3DSA:3.40.50.11240 55 235 6.0E-63 T 13-10-2018 BMD_3726 8a80cddb12dacdb722c4255c7eee64f3 200 Pfam PF01965 DJ-1/PfpI family 2 169 1.9E-29 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BMD_3726 8a80cddb12dacdb722c4255c7eee64f3 200 Gene3D G3DSA:3.40.50.880 1 199 6.0E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_3726 8a80cddb12dacdb722c4255c7eee64f3 200 SUPERFAMILY SSF52317 1 171 3.91E-32 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1324 d5d530f314d51820358582e79f62132f 44 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 22 41 1.1E-7 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_1324 d5d530f314d51820358582e79f62132f 44 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 17 39 1.5E-6 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_2414 b08db5cf07453d93b29af00b193c20b7 186 Gene3D G3DSA:3.40.109.10 1 184 1.3E-42 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_2414 b08db5cf07453d93b29af00b193c20b7 186 SUPERFAMILY SSF55469 1 175 8.25E-33 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_2414 b08db5cf07453d93b29af00b193c20b7 186 PIRSF PIRSF000232 1 186 8.8E-47 T 13-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like BMD_2414 b08db5cf07453d93b29af00b193c20b7 186 Pfam PF00881 Nitroreductase family 7 166 2.5E-24 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_1596 0750809ce88ee289ef277f40e2521178 503 Gene3D G3DSA:1.10.275.10 1 196 2.5E-71 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal BMD_1596 0750809ce88ee289ef277f40e2521178 503 SUPERFAMILY SSF48557 3 492 1.88E-199 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_1596 0750809ce88ee289ef277f40e2521178 503 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 13-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 BMD_1596 0750809ce88ee289ef277f40e2521178 503 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 3 487 8.1E-217 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1596 0750809ce88ee289ef277f40e2521178 503 Pfam PF00221 Aromatic amino acid lyase 10 468 8.9E-199 T 13-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 BMD_1596 0750809ce88ee289ef277f40e2521178 503 Gene3D G3DSA:1.20.200.10 197 499 3.7E-126 T 13-10-2018 BMD_1596 0750809ce88ee289ef277f40e2521178 503 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 501 45.404 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 Pfam PF00231 ATP synthase 3 284 1.6E-101 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 SUPERFAMILY SSF52943 2 284 1.7E-94 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 2 284 1.3E-112 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.5E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 PRINTS PR00126 ATP synthase gamma subunit signature 262 283 1.5E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.5E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 PRINTS PR00126 ATP synthase gamma subunit signature 231 250 1.5E-40 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 Gene3D G3DSA:1.10.287.80 6 280 4.8E-103 T 13-10-2018 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 Gene3D G3DSA:3.40.1380.10 61 203 4.8E-103 T 13-10-2018 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 270 283 - T 13-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5135 5f7b6854854e0ad3baa830849e9ac22f 285 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 284 36.584 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_4136 3024bf871fd383a07c980613b4b7816c 121 ProSitePatterns PS01319 Ribosome-binding factor A signature. 73 94 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 BMD_4136 3024bf871fd383a07c980613b4b7816c 121 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 7 94 4.0E-41 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BMD_4136 3024bf871fd383a07c980613b4b7816c 121 SUPERFAMILY SSF89919 2 110 3.14E-37 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily BMD_4136 3024bf871fd383a07c980613b4b7816c 121 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 3 113 2.3E-44 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BMD_4136 3024bf871fd383a07c980613b4b7816c 121 Pfam PF02033 Ribosome-binding factor A 4 107 1.3E-35 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BMD_4136 3024bf871fd383a07c980613b4b7816c 121 Gene3D G3DSA:3.30.300.20 1 116 5.6E-42 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_4136 3024bf871fd383a07c980613b4b7816c 121 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 107 28.928 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BMD_2772 e3a4e09e01a7dd0ee9fdcf32ccd4c2c0 389 SUPERFAMILY SSF56801 91 346 1.65E-6 T 13-10-2018 BMD_2772 e3a4e09e01a7dd0ee9fdcf32ccd4c2c0 389 Gene3D G3DSA:3.40.50.12780 22 359 1.1E-25 T 13-10-2018 BMD_2772 e3a4e09e01a7dd0ee9fdcf32ccd4c2c0 389 Pfam PF04443 Acyl-protein synthetase, LuxE 39 373 1.7E-48 T 13-10-2018 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 BMD_4609 c44ef781529482dd69a09507437f2604 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 291 2.7E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_4609 c44ef781529482dd69a09507437f2604 295 Gene3D G3DSA:1.10.3720.10 71 293 7.2E-35 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4609 c44ef781529482dd69a09507437f2604 295 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 14 291 1.6E-82 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 BMD_4609 c44ef781529482dd69a09507437f2604 295 SUPERFAMILY SSF161098 33 285 3.36E-37 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2535 08147141f94bb5dc3632cfad14688628 137 SUPERFAMILY SSF51735 10 135 7.35E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2535 08147141f94bb5dc3632cfad14688628 137 Pfam PF13380 CoA binding domain 19 133 2.0E-37 T 13-10-2018 IPR003781 CoA-binding GO:0048037 BMD_2535 08147141f94bb5dc3632cfad14688628 137 SMART SM00881 14 107 3.8E-16 T 13-10-2018 IPR003781 CoA-binding GO:0048037 BMD_2535 08147141f94bb5dc3632cfad14688628 137 Gene3D G3DSA:3.40.50.720 2 137 9.1E-38 T 13-10-2018 BMD_5012 4f308051ac3b11f6592590134f7cb6b1 241 Gene3D G3DSA:3.40.50.2300 1 122 4.2E-36 T 13-10-2018 BMD_5012 4f308051ac3b11f6592590134f7cb6b1 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 230 1.9E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_5012 4f308051ac3b11f6592590134f7cb6b1 241 Pfam PF00072 Response regulator receiver domain 5 115 3.3E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5012 4f308051ac3b11f6592590134f7cb6b1 241 SMART SM00862 155 230 1.6E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_5012 4f308051ac3b11f6592590134f7cb6b1 241 SMART SM00448 3 114 3.9E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5012 4f308051ac3b11f6592590134f7cb6b1 241 Gene3D G3DSA:1.10.10.10 132 241 4.4E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5012 4f308051ac3b11f6592590134f7cb6b1 241 SUPERFAMILY SSF52172 4 187 5.58E-39 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1028 ddbe8c370a242a8ac06c804de6a6a752 91 Gene3D G3DSA:3.40.50.2300 1 88 1.9E-20 T 13-10-2018 BMD_1028 ddbe8c370a242a8ac06c804de6a6a752 91 SUPERFAMILY SSF52794 1 87 5.23E-18 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_1028 ddbe8c370a242a8ac06c804de6a6a752 91 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 86 2.8E-16 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BMD_2432 7f5afdd6dbb238ba559cf786230f53bf 206 Pfam PF00293 NUDIX domain 27 135 5.1E-11 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_2432 7f5afdd6dbb238ba559cf786230f53bf 206 Gene3D G3DSA:3.90.79.10 1 202 2.0E-47 T 13-10-2018 BMD_2432 7f5afdd6dbb238ba559cf786230f53bf 206 SUPERFAMILY SSF55811 28 196 2.29E-28 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Gene3D G3DSA:1.25.40.10 104 202 4.2E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Gene3D G3DSA:1.25.40.10 203 416 1.3E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Pfam PF13432 Tetratricopeptide repeat 344 404 0.0011 T 13-10-2018 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Pfam PF13432 Tetratricopeptide repeat 210 262 0.0081 T 13-10-2018 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Pfam PF13176 Tetratricopeptide repeat 140 167 0.0097 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SUPERFAMILY SSF48452 36 404 7.94E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Pfam PF13181 Tetratricopeptide repeat 272 302 8.5E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Pfam PF13181 Tetratricopeptide repeat 174 198 0.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 203 236 91.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 339 372 26.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 271 304 0.57 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 134 167 27.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 66 99 62.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 170 201 120.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 237 270 44.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 SMART SM00028 305 338 37.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_4301 f38b06289896231d8b404e60eb9231b4 418 Gene3D G3DSA:1.25.40.10 31 103 2.1E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_2872 81568276b7769ded6f111f747ade3888 184 Pfam PF00583 Acetyltransferase (GNAT) family 45 165 1.7E-15 T 13-10-2018 IPR000182 GNAT domain BMD_2872 81568276b7769ded6f111f747ade3888 184 Gene3D G3DSA:3.40.630.30 2 184 7.8E-42 T 13-10-2018 BMD_2872 81568276b7769ded6f111f747ade3888 184 SUPERFAMILY SSF55729 3 182 1.29E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2712 fff570e48ee7c020c7a522a5a216d938 276 SUPERFAMILY SSF53474 49 262 5.26E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4451 996620428d26fa2c1d39cce825c402ca 206 Pfam PF09581 Stage III sporulation protein AF (Spore_III_AF) 12 198 1.3E-36 T 13-10-2018 IPR014245 Sporulation stage III, protein AF BMD_4451 996620428d26fa2c1d39cce825c402ca 206 TIGRFAM TIGR02896 spore_III_AF: stage III sporulation protein AF 2 111 1.1E-34 T 13-10-2018 IPR014245 Sporulation stage III, protein AF BMD_2454 912890f59c70d73586775a68eecaf39e 479 Pfam PF04030 D-arabinono-1,4-lactone oxidase 290 475 1.5E-6 T 13-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 BMD_2454 912890f59c70d73586775a68eecaf39e 479 Pfam PF01565 FAD binding domain 53 182 5.4E-28 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BMD_2454 912890f59c70d73586775a68eecaf39e 479 Gene3D G3DSA:3.30.43.10 48 468 1.1E-27 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 BMD_2454 912890f59c70d73586775a68eecaf39e 479 Gene3D G3DSA:3.40.462.10 216 436 1.1E-27 T 13-10-2018 IPR016170 Cytokinin dehydrogenase, C-terminal domain superfamily KEGG: 00908+1.5.99.12 BMD_2454 912890f59c70d73586775a68eecaf39e 479 Gene3D G3DSA:3.30.465.10 95 215 1.1E-27 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_2454 912890f59c70d73586775a68eecaf39e 479 SUPERFAMILY SSF56176 37 210 2.66E-37 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_2454 912890f59c70d73586775a68eecaf39e 479 SUPERFAMILY SSF55103 187 468 4.58E-20 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 130 147 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 SUPERFAMILY SSF51430 7 275 3.54E-92 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 PIRSF PIRSF000097 2 125 1.2E-40 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 PIRSF PIRSF000097 120 277 1.9E-52 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 234 249 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 44 61 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 Pfam PF00248 Aldo/keto reductase family 31 266 6.1E-48 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 Gene3D G3DSA:3.20.20.100 1 280 1.5E-125 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 PRINTS PR00069 Aldo-keto reductase signature 100 118 1.8E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 PRINTS PR00069 Aldo-keto reductase signature 164 193 1.8E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 PRINTS PR00069 Aldo-keto reductase signature 40 64 1.8E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 PRINTS PR00069 Aldo-keto reductase signature 130 147 1.8E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_1068 963fba6dd1fcb8fb74093bc23fe4939d 280 PRINTS PR00069 Aldo-keto reductase signature 201 225 1.8E-50 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_5216 70e66a5cd557491e438387e958db337e 338 PIRSF PIRSF000267 1 338 5.2E-109 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BMD_5216 70e66a5cd557491e438387e958db337e 338 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 4 326 1.9E-97 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BMD_5216 70e66a5cd557491e438387e958db337e 338 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 3 226 7.4E-82 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BMD_5159 30c8d3d69136853f1c95a3dd9738fca7 428 SUPERFAMILY SSF55205 1 415 7.36E-131 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BMD_5159 30c8d3d69136853f1c95a3dd9738fca7 428 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 415 41.246 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_5159 30c8d3d69136853f1c95a3dd9738fca7 428 Gene3D G3DSA:3.65.10.10 21 228 2.5E-155 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_5159 30c8d3d69136853f1c95a3dd9738fca7 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 405 6.3E-89 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BMD_5159 30c8d3d69136853f1c95a3dd9738fca7 428 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 414 4.1E-167 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_5159 30c8d3d69136853f1c95a3dd9738fca7 428 Gene3D G3DSA:3.65.10.10 6 412 2.5E-155 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_2082 9e695d2f5b09b9e034900e6490608706 330 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 235 324 4.3E-28 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_2082 9e695d2f5b09b9e034900e6490608706 330 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 186 9.4E-31 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_2082 9e695d2f5b09b9e034900e6490608706 330 SUPERFAMILY SSF53901 3 324 1.44E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2082 9e695d2f5b09b9e034900e6490608706 330 Gene3D G3DSA:3.40.47.10 1 330 1.6E-116 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2082 9e695d2f5b09b9e034900e6490608706 330 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 4 324 1.1E-109 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_2082 9e695d2f5b09b9e034900e6490608706 330 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 3 324 64.015 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 Pfam PF13244 Domain of unknown function (DUF4040) 610 674 1.4E-20 T 13-10-2018 IPR025383 Domain of unknown function DUF4040 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 Pfam PF00361 Proton-conducting membrane transporter 102 396 2.3E-70 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 TIGRFAM TIGR00940 2a6301s01: monovalent cation:proton antiporter 2 773 0.0 T 13-10-2018 IPR005663 Monovalent cation proton antiporter subunit A GO:0015077|GO:0030004 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 409 428 2.5E-46 T 13-10-2018 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 126 147 2.5E-46 T 13-10-2018 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 282 294 2.5E-46 T 13-10-2018 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 99 2.5E-46 T 13-10-2018 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 50 75 2.5E-46 T 13-10-2018 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 214 240 2.5E-46 T 13-10-2018 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 192 213 2.5E-46 T 13-10-2018 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 340 362 5.1E-8 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 52 72 5.1E-8 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 232 254 5.1E-8 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BMD_4924 92ef53d4db37d1df4f6b465720f390e7 774 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 35 89 2.3E-10 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 2.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 2.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 2.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 2.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 2.3E-37 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 SUPERFAMILY SSF51735 3 241 3.25E-68 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4112 1f800bc3487de678d96d98f012e799c0 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 239 3.0E-49 T 13-10-2018 BMD_4112 1f800bc3487de678d96d98f012e799c0 241 Gene3D G3DSA:3.40.50.720 2 240 2.0E-68 T 13-10-2018 BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 7.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 7.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4112 1f800bc3487de678d96d98f012e799c0 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 7.9E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_3833 11617f1b25791789ac53a098cd26195e 140 Pfam PF06146 Phosphate-starvation-inducible E 58 122 2.7E-11 T 13-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like BMD_3833 11617f1b25791789ac53a098cd26195e 140 PIRSF PIRSF029598 2 140 9.4E-30 T 13-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 BMD_0794 f5118e7aeda2969c2c13228a8a07fec0 399 SUPERFAMILY SSF103473 10 397 4.19E-61 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0794 f5118e7aeda2969c2c13228a8a07fec0 399 Gene3D G3DSA:1.20.1250.20 7 391 4.4E-49 T 13-10-2018 BMD_0794 f5118e7aeda2969c2c13228a8a07fec0 399 Pfam PF07690 Major Facilitator Superfamily 21 332 6.9E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1966 f266ddff38ed36b0bf191d0e68b94a31 115 SUPERFAMILY SSF89442 2 114 7.19E-53 T 13-10-2018 IPR036492 Hypothetical protein YojF superfamily BMD_1966 f266ddff38ed36b0bf191d0e68b94a31 115 Gene3D G3DSA:2.70.180.10 1 115 9.0E-52 T 13-10-2018 IPR036492 Hypothetical protein YojF superfamily BMD_1966 f266ddff38ed36b0bf191d0e68b94a31 115 Pfam PF08830 Protein of unknown function (DUF1806) 3 114 2.8E-54 T 13-10-2018 IPR014934 Protein of unknown function DUF1806 BMD_2776 5db0978c46351c0862664acacd0c8a35 110 Gene3D G3DSA:1.20.1290.10 5 110 3.1E-29 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_2776 5db0978c46351c0862664acacd0c8a35 110 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 90 9.9E-15 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BMD_2776 5db0978c46351c0862664acacd0c8a35 110 SUPERFAMILY SSF69118 12 108 3.8E-25 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_2776 5db0978c46351c0862664acacd0c8a35 110 Pfam PF02627 Carboxymuconolactone decarboxylase family 23 104 1.3E-18 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BMD_2100 0a75cd4fdeaee91f0a252056da2cac0c 444 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 87 113 4.1E-12 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_2100 0a75cd4fdeaee91f0a252056da2cac0c 444 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 41 60 4.1E-12 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_2100 0a75cd4fdeaee91f0a252056da2cac0c 444 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 12 33 4.1E-12 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_2100 0a75cd4fdeaee91f0a252056da2cac0c 444 Pfam PF00209 Sodium:neurotransmitter symporter family 5 124 3.7E-24 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_2100 0a75cd4fdeaee91f0a252056da2cac0c 444 Pfam PF00209 Sodium:neurotransmitter symporter family 146 443 9.0E-33 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_2100 0a75cd4fdeaee91f0a252056da2cac0c 444 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 28 42 - T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_2100 0a75cd4fdeaee91f0a252056da2cac0c 444 SUPERFAMILY SSF161070 5 442 3.27E-130 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 BMD_1848 a71a0bf739d95f9e9783dd5b948d22b4 297 Gene3D G3DSA:1.10.10.60 254 297 7.3E-6 T 13-10-2018 BMD_1848 a71a0bf739d95f9e9783dd5b948d22b4 297 SMART SM00717 104 149 13.0 T 13-10-2018 IPR001005 SANT/Myb domain BMD_1848 a71a0bf739d95f9e9783dd5b948d22b4 297 SMART SM00717 246 293 3.8 T 13-10-2018 IPR001005 SANT/Myb domain BMD_1848 a71a0bf739d95f9e9783dd5b948d22b4 297 SMART SM00717 55 100 63.0 T 13-10-2018 IPR001005 SANT/Myb domain BMD_1848 a71a0bf739d95f9e9783dd5b948d22b4 297 SMART SM00717 4 49 12.0 T 13-10-2018 IPR001005 SANT/Myb domain BMD_4549 85d6c31216d14ff62fe29acec7df167e 313 SUPERFAMILY SSF53335 96 310 2.41E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4549 85d6c31216d14ff62fe29acec7df167e 313 PIRSF PIRSF000401 1 313 4.0E-112 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BMD_4549 85d6c31216d14ff62fe29acec7df167e 313 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 305 6.2E-100 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BMD_4549 85d6c31216d14ff62fe29acec7df167e 313 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 311 2.2E-107 T 13-10-2018 BMD_4549 85d6c31216d14ff62fe29acec7df167e 313 Gene3D G3DSA:3.40.50.150 116 313 3.1E-65 T 13-10-2018 BMD_4549 85d6c31216d14ff62fe29acec7df167e 313 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 311 36.377 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 Pfam PF13353 4Fe-4S single cluster domain 127 199 7.4E-5 T 13-10-2018 BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 TIGRFAM TIGR03820 lys_2_3_AblA: lysine-2,3-aminomutase 23 427 8.7E-193 T 13-10-2018 IPR022459 Lysine-2,3-aminomutase KEGG: 00310+5.4.3.2 BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 Pfam PF12544 Lysine-2,3-aminomutase 321 447 1.8E-60 T 13-10-2018 IPR025895 Lysine-2,3-aminomutase, C-terminal domain BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 Gene3D G3DSA:2.40.50.600 349 414 4.8E-21 T 13-10-2018 BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 Pfam PF04055 Radical SAM superfamily 130 277 3.0E-7 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 Gene3D G3DSA:3.20.20.70 63 348 2.0E-118 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 SUPERFAMILY SSF102114 114 356 7.85E-34 T 13-10-2018 BMD_4025 b7e6d360de41ce8226d07284071dec2d 470 TIGRFAM TIGR00238 TIGR00238: KamA family protein 14 342 1.6E-147 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 SUPERFAMILY SSF57716 222 274 3.46E-18 T 13-10-2018 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 273 6.9E-111 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 134 224 9.8E-32 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 Pfam PF06827 Zinc finger found in FPG and IleRS 246 274 3.1E-9 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 SMART SM01232 134 226 5.5E-46 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 ProSitePatterns PS01242 Zinc finger FPG-type signature. 249 273 - T 13-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 Gene3D G3DSA:3.20.190.10 2 128 5.8E-41 T 13-10-2018 IPR035937 MutM-like, N-terminal BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 274 44.053 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 Gene3D G3DSA:1.10.8.50 136 274 3.2E-51 T 13-10-2018 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 SUPERFAMILY SSF81624 2 139 3.14E-43 T 13-10-2018 IPR035937 MutM-like, N-terminal BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 2 117 4.9E-33 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 SMART SM00898 2 118 1.1E-49 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BMD_4749 dcf97d9eb6cab029a5b84ab425a19886 277 SUPERFAMILY SSF46946 134 223 3.14E-30 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BMD_2605 b4e983b3ba0d17d197c2070bae27dfb3 303 Gene3D G3DSA:3.40.50.1400 127 250 1.0E-22 T 13-10-2018 BMD_2605 b4e983b3ba0d17d197c2070bae27dfb3 303 Gene3D G3DSA:3.40.50.1400 1 124 1.1E-28 T 13-10-2018 BMD_2605 b4e983b3ba0d17d197c2070bae27dfb3 303 SUPERFAMILY SSF53800 1 249 1.42E-52 T 13-10-2018 BMD_2605 b4e983b3ba0d17d197c2070bae27dfb3 303 Pfam PF01903 CbiX 9 114 5.1E-26 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 BMD_2605 b4e983b3ba0d17d197c2070bae27dfb3 303 Pfam PF01903 CbiX 138 242 1.3E-26 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 BMD_4186 12916218a0394668698a8dabfeb9d592 180 SUPERFAMILY SSF56235 3 179 6.92E-60 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_4186 12916218a0394668698a8dabfeb9d592 180 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 6 180 41.15 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BMD_4186 12916218a0394668698a8dabfeb9d592 180 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 7 180 1.5E-83 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BMD_4186 12916218a0394668698a8dabfeb9d592 180 PIRSF PIRSF039093 1 180 8.4E-85 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BMD_4186 12916218a0394668698a8dabfeb9d592 180 Pfam PF00227 Proteasome subunit 4 178 3.1E-25 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 BMD_4186 12916218a0394668698a8dabfeb9d592 180 Gene3D G3DSA:3.60.20.10 2 180 4.7E-68 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_4449 3ac49a7d4bd3deb19847d41d26c54506 214 Gene3D G3DSA:3.30.300.270 100 214 5.6E-39 T 13-10-2018 IPR038503 Stage III sporulation protein AH-like superfamily BMD_4449 3ac49a7d4bd3deb19847d41d26c54506 214 Pfam PF12685 SpoIIIAH-like protein 6 202 7.5E-42 T 13-10-2018 IPR024232 Stage III sporulation protein AH-like BMD_0088 4e87a92c3477bfb295b89a945fa7597b 179 Pfam PF00156 Phosphoribosyl transferase domain 13 159 3.8E-25 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_0088 4e87a92c3477bfb295b89a945fa7597b 179 SUPERFAMILY SSF53271 3 177 9.18E-59 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_0088 4e87a92c3477bfb295b89a945fa7597b 179 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 8 173 1.3E-69 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 BMD_0088 4e87a92c3477bfb295b89a945fa7597b 179 Gene3D G3DSA:3.40.50.2020 1 179 1.0E-66 T 13-10-2018 BMD_0202 71d2e3dd6a799e3b85311e592f42b012 689 Gene3D G3DSA:3.40.720.10 317 624 6.4E-42 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_0202 71d2e3dd6a799e3b85311e592f42b012 689 Pfam PF00884 Sulfatase 323 619 7.6E-38 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BMD_0202 71d2e3dd6a799e3b85311e592f42b012 689 SUPERFAMILY SSF53649 396 623 4.67E-21 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_0555 6279b1f85d38185fb81b5fb1a8166bd9 339 Pfam PF00899 ThiF family 5 240 1.6E-56 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BMD_0555 6279b1f85d38185fb81b5fb1a8166bd9 339 Gene3D G3DSA:3.40.50.720 1 251 4.8E-71 T 13-10-2018 BMD_0555 6279b1f85d38185fb81b5fb1a8166bd9 339 SUPERFAMILY SSF69572 3 327 3.53E-80 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BMD_1125 c1921aab48dda3cd10c1cf03899446d4 255 Gene3D G3DSA:3.20.20.140 1 255 7.3E-94 T 13-10-2018 BMD_1125 c1921aab48dda3cd10c1cf03899446d4 255 SUPERFAMILY SSF89550 1 232 1.1E-15 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BMD_1125 c1921aab48dda3cd10c1cf03899446d4 255 PIRSF PIRSF016557 1 255 3.9E-107 T 13-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 BMD_2532 d3572d15523c405f10c83fa086272a13 273 Gene3D G3DSA:3.40.50.1820 2 269 3.2E-71 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2532 d3572d15523c405f10c83fa086272a13 273 Pfam PF00561 alpha/beta hydrolase fold 23 254 1.5E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2532 d3572d15523c405f10c83fa086272a13 273 SUPERFAMILY SSF53474 4 266 2.66E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2532 d3572d15523c405f10c83fa086272a13 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 2.1E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2532 d3572d15523c405f10c83fa086272a13 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 2.1E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2532 d3572d15523c405f10c83fa086272a13 273 PRINTS PR00111 Alpha/beta hydrolase fold signature 212 226 2.1E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4998 fbda6379552fdaf9bee98552640891fe 349 Pfam PF01032 FecCD transport family 31 345 4.5E-89 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_4998 fbda6379552fdaf9bee98552640891fe 349 Gene3D G3DSA:1.10.3470.10 18 349 1.5E-92 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_4998 fbda6379552fdaf9bee98552640891fe 349 SUPERFAMILY SSF81345 14 345 1.7E-78 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_4720 6c07275b655f3f39ca511b83447da9a8 565 Gene3D G3DSA:3.30.300.310 459 563 3.1E-33 T 13-10-2018 BMD_4720 6c07275b655f3f39ca511b83447da9a8 565 ProSitePatterns PS00455 Putative AMP-binding domain signature. 215 226 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_4720 6c07275b655f3f39ca511b83447da9a8 565 Gene3D G3DSA:3.40.50.12780 15 454 1.0E-129 T 13-10-2018 BMD_4720 6c07275b655f3f39ca511b83447da9a8 565 Pfam PF13193 AMP-binding enzyme C-terminal domain 472 547 1.2E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_4720 6c07275b655f3f39ca511b83447da9a8 565 SUPERFAMILY SSF56801 20 557 1.96E-159 T 13-10-2018 BMD_4720 6c07275b655f3f39ca511b83447da9a8 565 Pfam PF00501 AMP-binding enzyme 33 462 6.1E-113 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_3789 33ad384399b57d3563ce2bf1165e4380 222 Gene3D G3DSA:3.50.30.50 1 219 1.8E-53 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_3789 33ad384399b57d3563ce2bf1165e4380 222 SUPERFAMILY SSF102198 4 219 1.31E-49 T 13-10-2018 IPR037175 Kynurenine formamidase superfamily GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_3789 33ad384399b57d3563ce2bf1165e4380 222 Pfam PF04199 Putative cyclase 7 161 2.0E-21 T 13-10-2018 IPR007325 Kynurenine formamidase/cyclase-like GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|MetaCyc: PWY-7765 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 Pfam PF01416 tRNA pseudouridine synthase 8 104 7.1E-12 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 Pfam PF01416 tRNA pseudouridine synthase 143 245 1.3E-32 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 PIRSF PIRSF001430 1 246 6.1E-88 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 SUPERFAMILY SSF55120 1 246 1.73E-88 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 Gene3D G3DSA:3.30.70.660 106 242 9.9E-52 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 244 37.488 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 Gene3D G3DSA:3.30.70.580 1 105 2.9E-35 T 13-10-2018 BMD_0165 5aba2da60a1c0db86a1e07822485b73a 246 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 3 239 3.4E-71 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4053 9abfdbfaf2d3eb6fbd5d56f6b178a3e1 506 SUPERFAMILY SSF53383 17 493 1.44E-125 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4053 9abfdbfaf2d3eb6fbd5d56f6b178a3e1 506 Gene3D G3DSA:3.40.640.10 113 362 1.4E-142 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4053 9abfdbfaf2d3eb6fbd5d56f6b178a3e1 506 Gene3D G3DSA:3.90.1150.170 58 484 1.4E-142 T 13-10-2018 BMD_4053 9abfdbfaf2d3eb6fbd5d56f6b178a3e1 506 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 305 326 - T 13-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 BMD_4053 9abfdbfaf2d3eb6fbd5d56f6b178a3e1 506 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 58 418 1.2E-73 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 Pfam PF00005 ABC transporter 20 187 8.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 SMART SM00382 343 514 4.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 SMART SM00382 28 231 4.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 Gene3D G3DSA:1.10.287.380 552 627 3.2E-8 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 Pfam PF16326 ABC transporter C-terminal domain 558 624 1.6E-13 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 Pfam PF12848 ABC transporter 226 295 1.9E-12 T 13-10-2018 IPR032781 ABC-transporter extension domain BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 SUPERFAMILY SSF52540 313 513 4.79E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 SUPERFAMILY SSF52540 4 238 1.6E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 Pfam PF00005 ABC transporter 336 469 1.2E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 Gene3D G3DSA:3.40.50.300 1 281 1.1E-69 T 13-10-2018 BMD_1942 b0e63c803a9f17e0514c06397ed39190 632 Gene3D G3DSA:3.40.50.300 282 551 3.2E-61 T 13-10-2018 BMD_0130 b5df214f34165a609d1712c5da235f67 156 Gene3D G3DSA:1.10.455.10 2 156 3.1E-63 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily BMD_0130 b5df214f34165a609d1712c5da235f67 156 SUPERFAMILY SSF47973 1 149 6.02E-60 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily BMD_0130 b5df214f34165a609d1712c5da235f67 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.465 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BMD_0130 b5df214f34165a609d1712c5da235f67 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 9.2E-70 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BMD_0130 b5df214f34165a609d1712c5da235f67 156 PIRSF PIRSF002122 5 156 4.1E-59 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 BMD_0130 b5df214f34165a609d1712c5da235f67 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0130 b5df214f34165a609d1712c5da235f67 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.8E-65 T 13-10-2018 IPR023798 Ribosomal protein S7 domain BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 289 317 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 PIRSF PIRSF039102 1 355 2.0E-113 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 SUPERFAMILY SSF52440 2 134 3.07E-35 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 Gene3D G3DSA:3.30.1490.20 150 220 2.6E-27 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 347 41.116 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 Pfam PF01820 D-ala D-ala ligase N-terminus 4 124 1.3E-30 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 SUPERFAMILY SSF56059 135 352 1.77E-61 T 13-10-2018 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 Gene3D G3DSA:3.30.470.20 221 360 7.0E-50 T 13-10-2018 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 102 113 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 346 3.2E-115 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 Gene3D G3DSA:3.40.50.20 1 124 6.0E-36 T 13-10-2018 BMD_0213 aa15b811a1df3bc4a28f8d9b10633054 360 Pfam PF07478 D-ala D-ala ligase C-terminus 142 343 3.6E-77 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_1440 bc12b45eb603a6a70af55baa5f71e779 1205 Pfam PF00350 Dynamin family 630 851 3.6E-42 T 13-10-2018 IPR022812 Dynamin superfamily BMD_1440 bc12b45eb603a6a70af55baa5f71e779 1205 Pfam PF00350 Dynamin family 51 205 1.2E-26 T 13-10-2018 IPR022812 Dynamin superfamily BMD_1440 bc12b45eb603a6a70af55baa5f71e779 1205 Gene3D G3DSA:3.40.50.300 51 286 2.5E-39 T 13-10-2018 BMD_1440 bc12b45eb603a6a70af55baa5f71e779 1205 SUPERFAMILY SSF52540 39 260 1.13E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1440 bc12b45eb603a6a70af55baa5f71e779 1205 SUPERFAMILY SSF52540 606 895 3.3E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4221 4207af3819a38c813b5c7a683da07e83 293 SUPERFAMILY SSF52540 64 291 5.5E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4221 4207af3819a38c813b5c7a683da07e83 293 Gene3D G3DSA:1.10.40.50 227 293 1.4E-22 T 13-10-2018 BMD_4221 4207af3819a38c813b5c7a683da07e83 293 Pfam PF03193 RsgA GTPase 59 225 1.7E-63 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 BMD_4221 4207af3819a38c813b5c7a683da07e83 293 SUPERFAMILY SSF50249 1 63 2.23E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4221 4207af3819a38c813b5c7a683da07e83 293 Pfam PF16745 RsgA N-terminal domain 3 56 7.8E-25 T 13-10-2018 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal BMD_4221 4207af3819a38c813b5c7a683da07e83 293 Gene3D G3DSA:3.40.50.300 62 225 1.0E-48 T 13-10-2018 BMD_4221 4207af3819a38c813b5c7a683da07e83 293 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 39 284 4.8E-93 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 BMD_4221 4207af3819a38c813b5c7a683da07e83 293 Gene3D G3DSA:2.40.50.140 1 61 9.6E-27 T 13-10-2018 BMD_4221 4207af3819a38c813b5c7a683da07e83 293 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 2 290 39.901 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 BMD_4826 52702cb0e6d7bd58f86248be795cdea1 310 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 307 1.7E-134 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BMD_4826 52702cb0e6d7bd58f86248be795cdea1 310 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BMD_4826 52702cb0e6d7bd58f86248be795cdea1 310 Gene3D G3DSA:3.40.50.1100 45 144 5.1E-118 T 13-10-2018 BMD_4826 52702cb0e6d7bd58f86248be795cdea1 310 Gene3D G3DSA:3.40.50.1100 6 303 5.1E-118 T 13-10-2018 BMD_4826 52702cb0e6d7bd58f86248be795cdea1 310 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 296 1.2E-70 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_4826 52702cb0e6d7bd58f86248be795cdea1 310 SUPERFAMILY SSF53686 1 307 7.99E-99 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_4826 52702cb0e6d7bd58f86248be795cdea1 310 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 307 5.0E-126 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BMD_1917 7abc785f8df22aa8304b53ccc8fb21c7 69 SUPERFAMILY SSF46785 2 65 3.69E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1917 7abc785f8df22aa8304b53ccc8fb21c7 69 Gene3D G3DSA:1.10.10.10 1 69 4.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1917 7abc785f8df22aa8304b53ccc8fb21c7 69 Pfam PF01638 HxlR-like helix-turn-helix 4 66 3.3E-19 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_4149 95beedd43353f37788fedf0fea0640fd 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 8.3E-77 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 BMD_4149 95beedd43353f37788fedf0fea0640fd 185 Gene3D G3DSA:1.10.132.20 12 182 2.8E-71 T 13-10-2018 BMD_4149 95beedd43353f37788fedf0fea0640fd 185 SUPERFAMILY SSF55194 4 183 1.27E-73 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 BMD_4149 95beedd43353f37788fedf0fea0640fd 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 28.465 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 BMD_4149 95beedd43353f37788fedf0fea0640fd 185 Gene3D G3DSA:3.30.1360.40 31 105 2.8E-71 T 13-10-2018 BMD_4149 95beedd43353f37788fedf0fea0640fd 185 Pfam PF01765 Ribosome recycling factor 20 183 7.9E-67 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 BMD_4181 30b38faf11ed776a0c3ed5aa1708c4f5 96 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 81 94 1.7E-16 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BMD_4181 30b38faf11ed776a0c3ed5aa1708c4f5 96 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 26 42 1.7E-16 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BMD_4181 30b38faf11ed776a0c3ed5aa1708c4f5 96 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 60 76 1.7E-16 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BMD_4181 30b38faf11ed776a0c3ed5aa1708c4f5 96 Pfam PF02049 Flagellar hook-basal body complex protein FliE 12 96 8.9E-28 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BMD_4181 30b38faf11ed776a0c3ed5aa1708c4f5 96 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 96 18.024 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BMD_4181 30b38faf11ed776a0c3ed5aa1708c4f5 96 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 12 96 2.4E-29 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BMD_0730 49a91697c3976f0a5a420d143d31dc97 268 Gene3D G3DSA:3.40.50.10330 19 265 1.2E-97 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 BMD_0730 49a91697c3976f0a5a420d143d31dc97 268 SUPERFAMILY SSF111331 19 264 1.3E-64 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BMD_0730 49a91697c3976f0a5a420d143d31dc97 268 Pfam PF01513 ATP-NAD kinase 26 188 1.3E-25 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BMD_0730 49a91697c3976f0a5a420d143d31dc97 268 Hamap MF_00361 NAD kinase [nadK]. 4 266 24.106 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BMD_0730 49a91697c3976f0a5a420d143d31dc97 268 Gene3D G3DSA:2.60.200.30 105 243 1.2E-97 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BMD_4559 82dc94b0bb097f45e2e9a765a7d041c2 338 Pfam PF06144 DNA polymerase III, delta subunit 18 193 2.2E-45 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 BMD_4559 82dc94b0bb097f45e2e9a765a7d041c2 338 Gene3D G3DSA:1.20.272.10 215 338 2.1E-39 T 13-10-2018 BMD_4559 82dc94b0bb097f45e2e9a765a7d041c2 338 SUPERFAMILY SSF52540 3 213 6.91E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4559 82dc94b0bb097f45e2e9a765a7d041c2 338 SUPERFAMILY SSF48019 217 336 3.49E-25 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BMD_4559 82dc94b0bb097f45e2e9a765a7d041c2 338 Gene3D G3DSA:1.10.8.60 148 214 5.8E-11 T 13-10-2018 BMD_4559 82dc94b0bb097f45e2e9a765a7d041c2 338 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 14 335 3.1E-83 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 BMD_4559 82dc94b0bb097f45e2e9a765a7d041c2 338 Gene3D G3DSA:3.40.50.300 2 143 1.1E-39 T 13-10-2018 BMD_4911 dd7c6735c727f972749626319aa3b77b 225 PRINTS PR01837 MgtC/SapB protein signature 12 31 1.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_4911 dd7c6735c727f972749626319aa3b77b 225 PRINTS PR01837 MgtC/SapB protein signature 65 87 1.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_4911 dd7c6735c727f972749626319aa3b77b 225 PRINTS PR01837 MgtC/SapB protein signature 31 49 1.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_4911 dd7c6735c727f972749626319aa3b77b 225 PRINTS PR01837 MgtC/SapB protein signature 93 117 1.1E-41 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_4911 dd7c6735c727f972749626319aa3b77b 225 Pfam PF02308 MgtC family 9 136 1.6E-34 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_1702 fd756b0382e1ca0f435410d52e743727 541 PIRSF PIRSF002741 4 535 9.3E-97 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_1702 fd756b0382e1ca0f435410d52e743727 541 Gene3D G3DSA:3.10.105.10 283 507 1.2E-140 T 13-10-2018 BMD_1702 fd756b0382e1ca0f435410d52e743727 541 Gene3D G3DSA:3.40.190.10 67 282 1.2E-140 T 13-10-2018 BMD_1702 fd756b0382e1ca0f435410d52e743727 541 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 455 5.3E-92 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_1702 fd756b0382e1ca0f435410d52e743727 541 TIGRFAM TIGR02294 nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein 42 537 6.9E-212 T 13-10-2018 IPR011980 Nickel ABC transporter, substrate-binding protein NikA GO:0015675|GO:0016151|GO:0020037 BMD_1702 fd756b0382e1ca0f435410d52e743727 541 SUPERFAMILY SSF53850 44 527 1.89E-124 T 13-10-2018 BMD_1702 fd756b0382e1ca0f435410d52e743727 541 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 90 112 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 Pfam PF01019 Gamma-glutamyltranspeptidase 61 514 4.0E-103 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 SUPERFAMILY SSF56235 45 516 3.67E-123 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 68 93 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 259 278 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 121 139 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 139 158 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 347 365 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 230 246 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 398 413 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 422 439 4.2E-53 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 Gene3D G3DSA:1.10.246.230 246 346 2.9E-30 T 13-10-2018 BMD_1008 e80d9dcd611b54451df351e7a57f1198 520 Gene3D G3DSA:3.60.20.40 347 517 3.0E-54 T 13-10-2018 BMD_4860 a8633426916322c9f33b59fbaf861d23 190 Pfam PF00484 Carbonic anhydrase 34 177 3.9E-20 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BMD_4860 a8633426916322c9f33b59fbaf861d23 190 Gene3D G3DSA:3.40.1050.10 2 182 1.5E-46 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BMD_4860 a8633426916322c9f33b59fbaf861d23 190 SMART SM00947 26 181 5.2E-34 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BMD_4860 a8633426916322c9f33b59fbaf861d23 190 SUPERFAMILY SSF53056 1 180 1.7E-42 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BMD_1831 64e53d76468ee5c6907a6271f1d4a9f5 248 SUPERFAMILY SSF52317 29 239 6.81E-39 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1831 64e53d76468ee5c6907a6271f1d4a9f5 248 Gene3D G3DSA:3.40.50.880 3 246 5.1E-77 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1831 64e53d76468ee5c6907a6271f1d4a9f5 248 Pfam PF07722 Peptidase C26 4 218 4.7E-68 T 13-10-2018 IPR011697 Peptidase C26 GO:0016787 Reactome: R-HSA-6798695 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 SUPERFAMILY SSF52172 1 129 4.84E-30 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 SMART SM00421 136 193 3.6E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 Gene3D G3DSA:3.40.50.12740 2 198 6.4E-61 T 13-10-2018 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 Pfam PF00072 Response regulator receiver domain 4 113 1.6E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 1.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 1.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 1.3E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 SMART SM00448 2 113 9.8E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 191 2.0E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_1472 17f50d65f23c3120f6f83be223bb1687 200 SUPERFAMILY SSF46894 126 199 5.78E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 Gene3D G3DSA:1.10.10.10 1 84 5.4E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 Pfam PF03466 LysR substrate binding domain 89 290 1.4E-37 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.1E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.1E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.1E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 SUPERFAMILY SSF46785 1 83 2.61E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 Gene3D G3DSA:3.40.190.290 91 295 5.1E-43 T 13-10-2018 BMD_3611 26c4206dc68fc3518d24fc2ad09141c8 296 SUPERFAMILY SSF53850 90 292 3.52E-36 T 13-10-2018 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 7 290 7.8E-109 T 13-10-2018 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 SUPERFAMILY SSF51905 2 266 1.68E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 7.6E-20 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 120 128 7.6E-20 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 212 228 7.6E-20 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 281 299 7.6E-20 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 155 179 7.6E-20 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 119 137 7.1E-14 T 13-10-2018 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 7.1E-14 T 13-10-2018 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 159 177 7.1E-14 T 13-10-2018 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 242 258 7.1E-14 T 13-10-2018 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 271 293 7.1E-14 T 13-10-2018 BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 Gene3D G3DSA:3.50.50.60 6 294 1.9E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 Gene3D G3DSA:3.50.50.60 132 249 1.9E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4339 083f046c7ad989b6dd9cc3cb02267281 323 TIGRFAM TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family 6 319 2.9E-147 T 13-10-2018 IPR023856 Bacillithiol biosynthesis thiol disulphide oxidoreductase, YpdA BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 206 341 1.2E-47 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 SUPERFAMILY SSF52467 201 367 1.33E-62 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 17 179 1.1E-53 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 Gene3D G3DSA:3.40.50.1220 201 365 6.4E-63 T 13-10-2018 BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 Gene3D G3DSA:3.40.50.970 11 187 5.9E-68 T 13-10-2018 BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 Gene3D G3DSA:3.40.50.970 369 571 6.2E-72 T 13-10-2018 BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 398 545 1.7E-51 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 SUPERFAMILY SSF52518 14 185 6.61E-60 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 17 570 2.8E-266 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BMD_4686 ceabba02324ecd0cc8219c578702eb76 572 SUPERFAMILY SSF52518 376 570 3.4E-70 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4296 9432076c533f815e5fe94ff32263815f 255 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 182 249 1.8E-12 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_4296 9432076c533f815e5fe94ff32263815f 255 Gene3D G3DSA:1.10.760.10 182 251 1.2E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BMD_4296 9432076c533f815e5fe94ff32263815f 255 SUPERFAMILY SSF81648 21 158 1.44E-30 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 BMD_4296 9432076c533f815e5fe94ff32263815f 255 PIRSF PIRSF036636 1 255 5.1E-144 T 13-10-2018 IPR012049 Menaquinone:cytochrome c reductase, cytochrome b/c subunit GO:0005506|GO:0009055|GO:0016021|GO:0020037 BMD_4296 9432076c533f815e5fe94ff32263815f 255 SUPERFAMILY SSF46626 137 252 1.6E-13 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BMD_4296 9432076c533f815e5fe94ff32263815f 255 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 71 159 1.0E-9 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 BMD_4296 9432076c533f815e5fe94ff32263815f 255 Gene3D G3DSA:1.20.810.10 13 169 1.2E-25 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 4.8E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 SUPERFAMILY SSF53850 90 298 2.53E-22 T 13-10-2018 BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 Gene3D G3DSA:3.40.190.10 162 268 3.6E-26 T 13-10-2018 BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 SUPERFAMILY SSF46785 1 86 1.59E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 Gene3D G3DSA:1.10.10.10 1 83 1.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 Pfam PF03466 LysR substrate binding domain 89 295 1.0E-21 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3739 6904287bfcc1c3f1c01637c51700f530 300 Gene3D G3DSA:3.40.190.10 91 288 3.6E-26 T 13-10-2018 BMD_5210 3fdf8927104966b84b173e1fb586977b 110 Pfam PF00892 EamA-like transporter family 1 107 2.5E-9 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_5210 3fdf8927104966b84b173e1fb586977b 110 SUPERFAMILY SSF103481 15 108 1.01E-10 T 13-10-2018 BMD_0861 ac685e78f96d662b9f3a6993e6e966a1 287 Gene3D G3DSA:3.40.190.10 33 284 6.0E-84 T 13-10-2018 BMD_0861 ac685e78f96d662b9f3a6993e6e966a1 287 Gene3D G3DSA:3.40.190.100 113 221 6.0E-84 T 13-10-2018 BMD_0861 ac685e78f96d662b9f3a6993e6e966a1 287 SUPERFAMILY SSF53850 29 286 7.67E-73 T 13-10-2018 BMD_0861 ac685e78f96d662b9f3a6993e6e966a1 287 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 276 1.6E-64 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 SUPERFAMILY SSF51569 5 325 9.73E-144 T 13-10-2018 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 190 209 7.7E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 297 316 7.7E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 122 136 7.7E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 242 258 7.7E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 267 282 7.7E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 152 171 7.7E-60 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 Pfam PF00490 Delta-aminolevulinic acid dehydratase 7 322 3.4E-152 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 Gene3D G3DSA:3.20.20.70 2 324 1.3E-150 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 SMART SM01004 4 323 4.9E-237 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 PIRSF PIRSF001415 1 326 2.1E-156 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_4668 cdc36cc710e1fc8ddefe8dc7c00ec6c9 326 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 242 254 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BMD_0647 25f3b6f125cd46a05c9e619db101bb57 72 Pfam PF10676 Spore germination protein gerPA/gerPF 1 71 2.5E-28 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF BMD_2583 bed0b858d550dcc21b2dbb1d123d9816 148 SMART SM00422 2 72 2.2E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_2583 bed0b858d550dcc21b2dbb1d123d9816 148 Gene3D G3DSA:1.10.1660.10 1 135 9.6E-26 T 13-10-2018 BMD_2583 bed0b858d550dcc21b2dbb1d123d9816 148 SUPERFAMILY SSF46955 2 121 2.38E-20 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_2583 bed0b858d550dcc21b2dbb1d123d9816 148 Pfam PF13411 MerR HTH family regulatory protein 2 70 4.0E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3484 1736c832ff9db2a357f88a58eedcdc5c 143 Gene3D G3DSA:3.10.180.10 9 143 6.5E-44 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3484 1736c832ff9db2a357f88a58eedcdc5c 143 SUPERFAMILY SSF54593 1 138 1.06E-34 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3484 1736c832ff9db2a357f88a58eedcdc5c 143 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 135 1.0E-9 T 13-10-2018 IPR028973 PhnB-like BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 SMART SM00267 132 299 1.3E-6 T 13-10-2018 IPR000160 GGDEF domain BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 Gene3D G3DSA:3.30.450.20 52 161 1.4E-34 T 13-10-2018 BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 PIRSF PIRSF026583 1 656 1.1E-275 T 13-10-2018 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 Pfam PF01368 DHH family 339 496 5.8E-22 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 SUPERFAMILY SSF64182 339 642 1.29E-67 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 Gene3D G3DSA:3.10.310.30 539 653 1.9E-10 T 13-10-2018 BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 Gene3D G3DSA:3.90.1640.10 322 538 7.5E-53 T 13-10-2018 BMD_5253 bb89539bfb35749305c1a2bd817d9a64 657 Pfam PF02272 DHHA1 domain 518 647 1.4E-13 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BMD_1397 b7dcdf9ebacd04619843158e76936909 393 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 383 9.5E-149 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_1397 b7dcdf9ebacd04619843158e76936909 393 Gene3D G3DSA:3.90.1150.10 253 391 4.7E-46 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1397 b7dcdf9ebacd04619843158e76936909 393 Gene3D G3DSA:3.40.640.10 1 252 1.5E-93 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1397 b7dcdf9ebacd04619843158e76936909 393 SUPERFAMILY SSF53383 10 384 4.98E-112 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1397 b7dcdf9ebacd04619843158e76936909 393 PIRSF PIRSF001434 1 387 1.7E-146 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_3814 328ff80703c9a06db0eb6871768fcbe4 304 Gene3D G3DSA:3.20.20.530 19 303 1.4E-93 T 13-10-2018 BMD_3814 328ff80703c9a06db0eb6871768fcbe4 304 SUPERFAMILY SSF51730 38 301 2.31E-73 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like BMD_3814 328ff80703c9a06db0eb6871768fcbe4 304 Pfam PF01619 Proline dehydrogenase 45 294 1.2E-31 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 BMD_3814 328ff80703c9a06db0eb6871768fcbe4 304 PIRSF PIRSF000196 2 304 1.5E-130 T 13-10-2018 IPR008219 Proline dehydrogenase, bacteria and archaea GO:0004657|GO:0010133 KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 BMD_1507 b4b852ed93094cbf1115852b85fa2703 335 Gene3D G3DSA:1.10.3470.10 7 335 4.4E-87 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_1507 b4b852ed93094cbf1115852b85fa2703 335 Pfam PF01032 FecCD transport family 21 334 6.2E-84 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_1507 b4b852ed93094cbf1115852b85fa2703 335 SUPERFAMILY SSF81345 6 334 3.92E-74 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_2593 134c96bc4d8c859d04db4c3b749b3f56 389 SUPERFAMILY SSF53187 233 379 2.51E-11 T 13-10-2018 BMD_2593 134c96bc4d8c859d04db4c3b749b3f56 389 TIGRFAM TIGR02867 spore_II_P: stage II sporulation protein P 175 379 2.3E-70 T 13-10-2018 IPR010897 Sporulation stage II, protein P BMD_2593 134c96bc4d8c859d04db4c3b749b3f56 389 Pfam PF07454 Stage II sporulation protein P (SpoIIP) 99 375 2.9E-72 T 13-10-2018 IPR010897 Sporulation stage II, protein P BMD_4592 8856a83ea7aea308ec3d298b18cc2495 218 SUPERFAMILY SSF53335 8 215 5.11E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4592 8856a83ea7aea308ec3d298b18cc2495 218 Gene3D G3DSA:3.40.50.150 1 218 1.1E-62 T 13-10-2018 BMD_4592 8856a83ea7aea308ec3d298b18cc2495 218 Pfam PF01596 O-methyltransferase 15 212 1.5E-30 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 BMD_3359 65e887039c8d26544281bde7bcabb089 479 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site BMD_3359 65e887039c8d26544281bde7bcabb089 479 SUPERFAMILY SSF51445 2 473 6.0E-164 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_3359 65e887039c8d26544281bde7bcabb089 479 Gene3D G3DSA:3.20.20.80 1 479 2.8E-164 T 13-10-2018 BMD_3359 65e887039c8d26544281bde7bcabb089 479 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 373 381 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site BMD_3359 65e887039c8d26544281bde7bcabb089 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 441 453 2.9E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BMD_3359 65e887039c8d26544281bde7bcabb089 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 394 405 2.9E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BMD_3359 65e887039c8d26544281bde7bcabb089 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 304 318 2.9E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BMD_3359 65e887039c8d26544281bde7bcabb089 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 416 433 2.9E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BMD_3359 65e887039c8d26544281bde7bcabb089 479 PRINTS PR00131 Glycosyl hydrolase family 1 signature 373 381 2.9E-18 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BMD_3359 65e887039c8d26544281bde7bcabb089 479 Pfam PF00232 Glycosyl hydrolase family 1 3 476 5.0E-135 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BMD_1086 d6204aeaf25821a05f8bba2703bff28e 171 Pfam PF07883 Cupin domain 48 110 8.8E-13 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_1086 d6204aeaf25821a05f8bba2703bff28e 171 Gene3D G3DSA:2.60.120.10 3 166 4.4E-36 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_1086 d6204aeaf25821a05f8bba2703bff28e 171 SUPERFAMILY SSF51182 29 126 1.03E-20 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_0669 9dc295b65bc89b3cbdd2b502bd0e2288 287 Pfam PF13509 S1 domain 9 63 1.3E-19 T 13-10-2018 IPR039566 Conserved virulence factor B, S1 domain BMD_0669 9dc295b65bc89b3cbdd2b502bd0e2288 287 PIRSF PIRSF012524 1 284 2.1E-104 T 13-10-2018 IPR014464 Conserved virulence factor B BMD_0669 9dc295b65bc89b3cbdd2b502bd0e2288 287 Gene3D G3DSA:2.40.50.140 153 220 5.1E-19 T 13-10-2018 BMD_0669 9dc295b65bc89b3cbdd2b502bd0e2288 287 SUPERFAMILY SSF50249 155 213 7.92E-5 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0669 9dc295b65bc89b3cbdd2b502bd0e2288 287 Gene3D G3DSA:2.40.50.140 73 148 2.5E-24 T 13-10-2018 BMD_0669 9dc295b65bc89b3cbdd2b502bd0e2288 287 Gene3D G3DSA:1.10.10.10 221 282 7.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0997 b86502c85bc9301c217e55fa37a08d6e 57 Pfam PF02416 mttA/Hcf106 family 3 54 4.3E-23 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BMD_0997 b86502c85bc9301c217e55fa37a08d6e 57 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 46 2.8E-19 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BMD_0997 b86502c85bc9301c217e55fa37a08d6e 57 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 57 17.121 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 PRINTS PR00147 DNA photolyase signature 138 154 6.3E-23 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 PRINTS PR00147 DNA photolyase signature 342 360 6.3E-23 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 PRINTS PR00147 DNA photolyase signature 322 338 6.3E-23 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 PRINTS PR00147 DNA photolyase signature 381 395 6.3E-23 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 322 334 - T 13-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 Pfam PF00875 DNA photolyase 6 156 1.7E-44 T 13-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 Gene3D G3DSA:1.10.579.10 291 475 2.2E-86 T 13-10-2018 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 SUPERFAMILY SSF48173 188 474 2.75E-114 T 13-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 342 361 - T 13-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 SUPERFAMILY SSF52425 2 170 7.19E-52 T 13-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 Pfam PF03441 FAD binding domain of DNA photolyase 273 472 1.6E-91 T 13-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 Gene3D G3DSA:3.40.50.620 6 199 3.7E-81 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4057 d71e629aa15742a781756d5d0e76bcd4 475 Gene3D G3DSA:1.25.40.80 129 284 3.7E-81 T 13-10-2018 BMD_5013 644c652d4cc77b8a66491d48f2f635ba 375 SUPERFAMILY SSF53756 72 351 1.76E-28 T 13-10-2018 BMD_5013 644c652d4cc77b8a66491d48f2f635ba 375 Pfam PF00534 Glycosyl transferases group 1 217 336 2.8E-6 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_5013 644c652d4cc77b8a66491d48f2f635ba 375 Gene3D G3DSA:3.40.50.2000 181 345 3.0E-20 T 13-10-2018 BMD_5013 644c652d4cc77b8a66491d48f2f635ba 375 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 16 181 6.4E-33 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 BMD_0947 795bd8f5a380919adfced9c5e50587d6 189 Pfam PF07615 YKOF-related Family 6 80 2.4E-21 T 13-10-2018 IPR011522 Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative BMD_0947 795bd8f5a380919adfced9c5e50587d6 189 Pfam PF07615 YKOF-related Family 110 186 2.1E-19 T 13-10-2018 IPR011522 Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative BMD_0947 795bd8f5a380919adfced9c5e50587d6 189 Gene3D G3DSA:3.30.70.930 107 189 1.5E-23 T 13-10-2018 IPR029756 MTH1187/YkoF-like BMD_0947 795bd8f5a380919adfced9c5e50587d6 189 SUPERFAMILY SSF89957 6 186 1.57E-32 T 13-10-2018 IPR029756 MTH1187/YkoF-like BMD_0947 795bd8f5a380919adfced9c5e50587d6 189 Gene3D G3DSA:3.30.70.930 2 81 1.7E-21 T 13-10-2018 IPR029756 MTH1187/YkoF-like BMD_1258 ad9635254d1b1a1911d7a4dc2074b7e1 165 PIRSF PIRSF027377 10 147 4.1E-63 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BMD_1258 ad9635254d1b1a1911d7a4dc2074b7e1 165 SUPERFAMILY SSF55620 27 136 4.45E-29 T 13-10-2018 BMD_1258 ad9635254d1b1a1911d7a4dc2074b7e1 165 Pfam PF14489 QueF-like protein 62 140 1.9E-35 T 13-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BMD_1258 ad9635254d1b1a1911d7a4dc2074b7e1 165 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 28 138 3.8E-56 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BMD_1258 ad9635254d1b1a1911d7a4dc2074b7e1 165 Gene3D G3DSA:3.30.1130.10 21 165 7.8E-69 T 13-10-2018 BMD_1258 ad9635254d1b1a1911d7a4dc2074b7e1 165 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 165 72.532 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BMD_4510 90783acd705fbf5a5c71b001e8327513 263 Pfam PF06691 Protein of unknown function (DUF1189) 5 242 3.3E-36 T 13-10-2018 IPR009574 Protein of unknown function DUF1189 BMD_0766 af30a540c3493e1d211569304461b6a3 112 Pfam PF11181 Heat induced stress protein YflT 4 103 8.0E-22 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_2692 9b1a226fe24f903995e900a8b01a45b8 303 Pfam PF00005 ABC transporter 22 162 2.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2692 9b1a226fe24f903995e900a8b01a45b8 303 SMART SM00382 30 211 1.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2692 9b1a226fe24f903995e900a8b01a45b8 303 SUPERFAMILY SSF52540 3 231 3.3E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2692 9b1a226fe24f903995e900a8b01a45b8 303 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2692 9b1a226fe24f903995e900a8b01a45b8 303 Gene3D G3DSA:3.40.50.300 1 232 7.9E-61 T 13-10-2018 BMD_0565 81df31c669a649da3d7a8d65fc5453b6 69 ProDom PD056348 YHEE BH1143 1 69 3.0E-15 T 13-10-2018 IPR017263 Uncharacterised conserved protein UCP037692 BMD_0565 81df31c669a649da3d7a8d65fc5453b6 69 PIRSF PIRSF037692 1 69 2.5E-27 T 13-10-2018 IPR017263 Uncharacterised conserved protein UCP037692 BMD_0565 81df31c669a649da3d7a8d65fc5453b6 69 Pfam PF17277 Family of unknown function (DUF5342) 1 69 6.3E-31 T 13-10-2018 IPR017263 Uncharacterised conserved protein UCP037692 BMD_4337 2148f9bb8537473a383acc7162eb2e7f 216 PIRSF PIRSF016933 1 215 3.4E-85 T 13-10-2018 IPR023596 Peptidase PrsW, archaeal/bacterial GO:0008233 BMD_4337 2148f9bb8537473a383acc7162eb2e7f 216 Pfam PF13367 Protease prsW family 28 199 1.6E-34 T 13-10-2018 IPR026898 Protease PrsW GO:0008233 BMD_2986 e3038d47ba8089ce257b901701ca0e9f 204 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 4 198 9.8E-101 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 BMD_2986 e3038d47ba8089ce257b901701ca0e9f 204 SUPERFAMILY SSF52540 3 195 1.05E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2986 e3038d47ba8089ce257b901701ca0e9f 204 Hamap MF_01389 Urease accessory protein UreG [ureG]. 2 200 46.057 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 BMD_2986 e3038d47ba8089ce257b901701ca0e9f 204 Gene3D G3DSA:3.40.50.300 3 200 5.2E-50 T 13-10-2018 BMD_2986 e3038d47ba8089ce257b901701ca0e9f 204 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 176 2.9E-38 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain BMD_2986 e3038d47ba8089ce257b901701ca0e9f 204 PIRSF PIRSF005624 1 202 8.2E-49 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 BMD_4970 cda5f81355318f7f6b257cf2531cc6c5 213 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 15 181 2.1E-26 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like BMD_3958 1885bf636c94cee12f4d7a4abba6e23d 140 Pfam PF04138 GtrA-like protein 7 129 1.1E-19 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 PIRSF PIRSF038928 22 514 4.4E-182 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 Pfam PF00199 Catalase 32 421 5.8E-177 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 SMART SM01060 32 425 1.7E-260 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 Pfam PF06628 Catalase-related immune-responsive 447 508 3.7E-18 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 363 371 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 SUPERFAMILY SSF56634 20 512 8.24E-203 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 Gene3D G3DSA:2.40.180.10 28 527 1.5E-224 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 ProSitePatterns PS00438 Catalase proximal active site signature. 68 84 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 PRINTS PR00067 Catalase signature 45 68 2.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 PRINTS PR00067 Catalase signature 318 345 2.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 PRINTS PR00067 Catalase signature 113 131 2.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 PRINTS PR00067 Catalase signature 350 376 2.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 PRINTS PR00067 Catalase signature 134 151 2.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_3040 b8868c02be00836c5741cccde7f618e1 564 PRINTS PR00067 Catalase signature 153 171 2.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BMD_1232 cd1b3fbf869ccd86b2913f20dddc9003 260 SUPERFAMILY SSF56317 3 260 6.93E-71 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_1232 cd1b3fbf869ccd86b2913f20dddc9003 260 Pfam PF00795 Carbon-nitrogen hydrolase 5 247 1.6E-44 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BMD_1232 cd1b3fbf869ccd86b2913f20dddc9003 260 Gene3D G3DSA:3.60.110.10 1 260 2.9E-89 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_3272 3995240e039ac3ee840fb57320672fc2 129 Gene3D G3DSA:3.10.180.10 1 125 7.4E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3272 3995240e039ac3ee840fb57320672fc2 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 116 4.1E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_3272 3995240e039ac3ee840fb57320672fc2 129 SUPERFAMILY SSF54593 1 124 7.79E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_0276 778d42479062d83f89ccea0edc04b48d 228 PIRSF PIRSF001586 1 223 3.5E-91 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0276 778d42479062d83f89ccea0edc04b48d 228 Gene3D G3DSA:3.40.50.880 1 221 7.3E-75 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0276 778d42479062d83f89ccea0edc04b48d 228 SMART SM01211 1 220 2.8E-137 T 13-10-2018 BMD_0276 778d42479062d83f89ccea0edc04b48d 228 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 218 45.77 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0276 778d42479062d83f89ccea0edc04b48d 228 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 205 5.3E-48 T 13-10-2018 BMD_0276 778d42479062d83f89ccea0edc04b48d 228 SUPERFAMILY SSF52317 2 220 7.37E-79 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0276 778d42479062d83f89ccea0edc04b48d 228 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 219 8.9E-97 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_4352 90b32c4c11e3d309b7daf11ce4f4ae4a 229 Gene3D G3DSA:3.10.350.10 187 229 3.7E-12 T 13-10-2018 IPR036779 LysM domain superfamily BMD_4352 90b32c4c11e3d309b7daf11ce4f4ae4a 229 Pfam PF01551 Peptidase family M23 53 151 3.5E-31 T 13-10-2018 IPR016047 Peptidase M23 BMD_4352 90b32c4c11e3d309b7daf11ce4f4ae4a 229 Pfam PF01476 LysM domain 190 227 1.4E-10 T 13-10-2018 IPR018392 LysM domain BMD_4352 90b32c4c11e3d309b7daf11ce4f4ae4a 229 Gene3D G3DSA:2.70.70.10 24 157 4.9E-41 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_4352 90b32c4c11e3d309b7daf11ce4f4ae4a 229 SUPERFAMILY SSF51261 34 155 1.96E-45 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_4352 90b32c4c11e3d309b7daf11ce4f4ae4a 229 SUPERFAMILY SSF54106 186 227 1.15E-8 T 13-10-2018 BMD_4352 90b32c4c11e3d309b7daf11ce4f4ae4a 229 SMART SM00257 185 228 3.9E-8 T 13-10-2018 IPR018392 LysM domain BMD_3444 d7f1bf0f2851e76ee6ad8b5aa5a7bf67 257 Pfam PF12679 ABC-2 family transporter protein 68 215 8.3E-8 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 BMD_1243 db98649a74bebcb080e8a726df532241 243 Pfam PF02535 ZIP Zinc transporter 101 239 4.1E-15 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 4 423 33.009 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 Gene3D G3DSA:3.65.10.10 6 418 1.3E-156 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 8 422 3.5E-134 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 4 418 9.6E-126 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 Gene3D G3DSA:3.65.10.10 16 225 1.3E-156 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 ProSitePatterns PS00104 EPSP synthase signature 1. 83 97 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 ProSitePatterns PS00885 EPSP synthase signature 2. 335 353 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 SUPERFAMILY SSF55205 3 421 2.35E-136 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BMD_3027 9e08ee2156a5cc9f179cb5277a1d7e41 423 PIRSF PIRSF000505 1 423 9.3E-122 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_0939 2f3b6f1df6209e15545ab5ffae8d86a5 536 SUPERFAMILY SSF51445 101 246 1.17E-9 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_0939 2f3b6f1df6209e15545ab5ffae8d86a5 536 Gene3D G3DSA:3.20.20.80 88 238 9.4E-8 T 13-10-2018 BMD_4523 d276c45d55a5f8a54b7862bc28f1b513 316 Pfam PF02401 LytB protein 4 284 7.7E-81 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BMD_4523 d276c45d55a5f8a54b7862bc28f1b513 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 288 32.584 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BMD_4523 d276c45d55a5f8a54b7862bc28f1b513 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 286 8.5E-92 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BMD_4523 d276c45d55a5f8a54b7862bc28f1b513 316 Gene3D G3DSA:3.40.50.11270 12 103 1.3E-96 T 13-10-2018 BMD_4523 d276c45d55a5f8a54b7862bc28f1b513 316 Gene3D G3DSA:3.40.1010.20 7 284 1.3E-96 T 13-10-2018 BMD_4523 d276c45d55a5f8a54b7862bc28f1b513 316 Gene3D G3DSA:3.40.1010.20 104 197 1.3E-96 T 13-10-2018 BMD_5242 9a6fa226f79089b0af91fe92f04752d8 259 Gene3D G3DSA:3.30.310.160 70 181 2.3E-65 T 13-10-2018 BMD_5242 9a6fa226f79089b0af91fe92f04752d8 259 Pfam PF09648 YycH protein 40 249 1.1E-56 T 13-10-2018 IPR018604 Regulatory protein YycH-like GO:0016021 BMD_5242 9a6fa226f79089b0af91fe92f04752d8 259 Gene3D G3DSA:3.10.450.660 49 253 2.3E-65 T 13-10-2018 BMD_3134 60f7f3c37e6431087847088055d10558 197 Pfam PF03845 Spore germination protein 8 186 2.9E-22 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_1586 c3862ff87aa08fa26c73792005797239 217 SUPERFAMILY SSF161098 7 215 1.96E-47 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1586 c3862ff87aa08fa26c73792005797239 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 216 5.2E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1586 c3862ff87aa08fa26c73792005797239 217 Gene3D G3DSA:1.10.3720.10 3 217 1.9E-50 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4096 f48a0f844e909722ed6e201354378b0c 465 Pfam PF13520 Amino acid permease 27 430 1.8E-58 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_4096 f48a0f844e909722ed6e201354378b0c 465 PIRSF PIRSF006060 5 465 1.9E-91 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_4096 f48a0f844e909722ed6e201354378b0c 465 Gene3D G3DSA:1.20.1740.10 22 465 1.5E-135 T 13-10-2018 BMD_0368 b23f2ab8be72514e655f55b3555765e2 170 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 4 170 1.7E-55 T 13-10-2018 IPR006286 Deglycase PfpI BMD_0368 b23f2ab8be72514e655f55b3555765e2 170 Gene3D G3DSA:3.40.50.880 1 169 2.0E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0368 b23f2ab8be72514e655f55b3555765e2 170 SUPERFAMILY SSF52317 1 169 4.44E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_0368 b23f2ab8be72514e655f55b3555765e2 170 Pfam PF01965 DJ-1/PfpI family 3 166 2.1E-52 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BMD_2942 6888963713b4b4c3931c5428036f5031 391 Gene3D G3DSA:3.40.50.2300 157 285 2.1E-90 T 13-10-2018 BMD_2942 6888963713b4b4c3931c5428036f5031 391 SUPERFAMILY SSF53822 38 377 5.18E-79 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_2942 6888963713b4b4c3931c5428036f5031 391 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 79 97 1.5E-6 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BMD_2942 6888963713b4b4c3931c5428036f5031 391 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 267 285 1.5E-6 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BMD_2942 6888963713b4b4c3931c5428036f5031 391 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 38 54 1.5E-6 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BMD_2942 6888963713b4b4c3931c5428036f5031 391 Pfam PF13458 Periplasmic binding protein 38 365 1.4E-49 T 13-10-2018 IPR028081 Leucine-binding protein domain BMD_2942 6888963713b4b4c3931c5428036f5031 391 Gene3D G3DSA:3.40.50.2300 39 362 2.1E-90 T 13-10-2018 BMD_0691 cb62b97105fe1f1467a7a09f4ffad7cf 294 Gene3D G3DSA:3.40.50.720 2 164 7.5E-55 T 13-10-2018 BMD_0691 cb62b97105fe1f1467a7a09f4ffad7cf 294 SUPERFAMILY SSF48179 166 289 1.7E-38 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_0691 cb62b97105fe1f1467a7a09f4ffad7cf 294 SUPERFAMILY SSF51735 5 165 7.39E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0691 cb62b97105fe1f1467a7a09f4ffad7cf 294 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 167 286 2.7E-35 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 BMD_0691 cb62b97105fe1f1467a7a09f4ffad7cf 294 Gene3D G3DSA:1.10.1040.10 165 292 9.7E-40 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_0691 cb62b97105fe1f1467a7a09f4ffad7cf 294 PIRSF PIRSF000103 1 293 5.1E-72 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 BMD_0691 cb62b97105fe1f1467a7a09f4ffad7cf 294 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 161 1.7E-52 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 SUPERFAMILY SSF52172 2 126 9.25E-32 T 13-10-2018 IPR011006 CheY-like superfamily BMD_4436 553dfd950fbedce17a44771090ed5da8 262 TIGRFAM TIGR02875 spore_0_A: sporulation transcription factor Spo0A 2 262 1.5E-131 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 Pfam PF00072 Response regulator receiver domain 6 119 2.9E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 Pfam PF08769 Sporulation initiation factor Spo0A C terminal 152 255 2.2E-45 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 SUPERFAMILY SSF46894 146 260 3.06E-48 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 PIRSF PIRSF002937 1 262 1.3E-133 T 13-10-2018 IPR012052 Sporulation transcription factor Spo0A GO:0003677|GO:0005509|GO:0006355|GO:0043937|GO:0051606 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 ProDom PD010908 TRANSCRIPTION SPORULATION TWO-COMPONENT DNA-BINDING PHOSPHORYLATION SENSORY REGULATION TRANSDUCTION METAL-BINDING CALCIUM 151 261 5.0E-58 T 13-10-2018 IPR014879 Sporulation initiation factor Spo0A, C-terminal GO:0003700|GO:0005509|GO:0005737|GO:0006355|GO:0042173 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 SMART SM00448 4 119 4.7E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 Gene3D G3DSA:3.40.50.2300 1 144 3.0E-32 T 13-10-2018 BMD_4436 553dfd950fbedce17a44771090ed5da8 262 Gene3D G3DSA:1.10.10.10 145 262 8.9E-55 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2911 8476a2d438a86f3c1ecb61b8088b4e19 257 Pfam PF12146 Serine aminopeptidase, S33 22 225 7.3E-23 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_2911 8476a2d438a86f3c1ecb61b8088b4e19 257 Gene3D G3DSA:3.40.50.1820 1 246 1.1E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2911 8476a2d438a86f3c1ecb61b8088b4e19 257 PIRSF PIRSF017388 4 248 1.7E-61 T 13-10-2018 IPR012354 Esterase/lipase GO:0052689 BMD_2911 8476a2d438a86f3c1ecb61b8088b4e19 257 SUPERFAMILY SSF53474 17 246 9.92E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4275 c204e6e55392d2175aeb4a1bd70a81c1 513 Gene3D G3DSA:3.90.226.10 3 250 2.3E-74 T 13-10-2018 BMD_4275 c204e6e55392d2175aeb4a1bd70a81c1 513 SUPERFAMILY SSF52096 240 511 5.98E-81 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4275 c204e6e55392d2175aeb4a1bd70a81c1 513 SUPERFAMILY SSF52096 11 252 3.56E-63 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4275 c204e6e55392d2175aeb4a1bd70a81c1 513 Gene3D G3DSA:3.90.226.10 251 512 3.0E-83 T 13-10-2018 BMD_4275 c204e6e55392d2175aeb4a1bd70a81c1 513 Pfam PF01039 Carboxyl transferase domain 33 510 8.6E-155 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 BMD_4935 a4a02c5b177940e3e944cd501bbeea21 166 Gene3D G3DSA:3.30.70.920 55 153 1.5E-19 T 13-10-2018 BMD_4935 a4a02c5b177940e3e944cd501bbeea21 166 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 49 1.6E-7 T 13-10-2018 BMD_4935 a4a02c5b177940e3e944cd501bbeea21 166 Gene3D G3DSA:1.10.10.10 3 54 3.4E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4935 a4a02c5b177940e3e944cd501bbeea21 166 SUPERFAMILY SSF54909 66 147 3.62E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_4935 a4a02c5b177940e3e944cd501bbeea21 166 Pfam PF01037 Lrp/AsnC ligand binding domain 72 144 2.1E-13 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BMD_4935 a4a02c5b177940e3e944cd501bbeea21 166 SMART SM00344 3 114 1.7E-5 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BMD_4935 a4a02c5b177940e3e944cd501bbeea21 166 SUPERFAMILY SSF46785 3 60 2.05E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 PRINTS PR00095 Anthranilate synthase component I signature 329 342 2.0E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 PRINTS PR00095 Anthranilate synthase component I signature 343 356 2.0E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 PRINTS PR00095 Anthranilate synthase component I signature 423 437 2.0E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 PRINTS PR00095 Anthranilate synthase component I signature 438 452 2.0E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 SUPERFAMILY SSF56322 17 494 9.29E-142 T 13-10-2018 IPR005801 ADC synthase GO:0009058 BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 165 2.9E-28 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 27 489 1.7E-165 T 13-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 Pfam PF00425 chorismate binding enzyme 228 481 3.4E-93 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BMD_4310 4c8e8ddfd3b38100ea7fb9d18d942166 504 Gene3D G3DSA:3.60.120.10 1 499 7.8E-164 T 13-10-2018 IPR005801 ADC synthase GO:0009058 BMD_3451 53ca2bacee2dd9404989321d103dd4bf 72 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 6 68 7.4E-24 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3451 53ca2bacee2dd9404989321d103dd4bf 72 Gene3D G3DSA:1.10.260.40 6 72 1.3E-9 T 13-10-2018 BMD_3451 53ca2bacee2dd9404989321d103dd4bf 72 SUPERFAMILY SSF47413 1 69 3.66E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3451 53ca2bacee2dd9404989321d103dd4bf 72 SMART SM00530 6 62 5.2E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_4942 526485d1aaadf1951b69f36ef548dca4 127 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 7 122 1.3E-36 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 BMD_4942 526485d1aaadf1951b69f36ef548dca4 127 SUPERFAMILY SSF54637 4 126 2.82E-28 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_4942 526485d1aaadf1951b69f36ef548dca4 127 Pfam PF03061 Thioesterase superfamily 37 115 4.2E-12 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_4942 526485d1aaadf1951b69f36ef548dca4 127 Gene3D G3DSA:3.10.129.10 1 127 3.1E-50 T 13-10-2018 BMD_0350 2449b40c5d2e3cd147a6afcd42f33aae 79 Gene3D G3DSA:3.10.20.90 1 79 6.7E-36 T 13-10-2018 BMD_0350 2449b40c5d2e3cd147a6afcd42f33aae 79 PIRSF PIRSF037793 1 79 1.5E-28 T 13-10-2018 IPR014921 EsaB BMD_0350 2449b40c5d2e3cd147a6afcd42f33aae 79 Pfam PF08817 WXG100 protein secretion system (Wss), protein YukD 3 78 1.0E-11 T 13-10-2018 IPR024962 YukD-like BMD_1600 b96aef9c275181ec4512771ba6706874 312 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 9 19 - T 13-10-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 BMD_1600 b96aef9c275181ec4512771ba6706874 312 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 300 9.2E-87 T 13-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BMD_1600 b96aef9c275181ec4512771ba6706874 312 Gene3D G3DSA:3.90.245.10 1 312 4.9E-113 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like BMD_1600 b96aef9c275181ec4512771ba6706874 312 SUPERFAMILY SSF53590 3 307 2.35E-97 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like BMD_0531 a295da285652b863d5aee8ea8fefcde6 512 Pfam PF00795 Carbon-nitrogen hydrolase 231 490 1.7E-31 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BMD_0531 a295da285652b863d5aee8ea8fefcde6 512 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 374 394 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site BMD_0531 a295da285652b863d5aee8ea8fefcde6 512 SUPERFAMILY SSF56317 226 495 3.4E-58 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_0531 a295da285652b863d5aee8ea8fefcde6 512 Gene3D G3DSA:3.40.630.30 4 224 7.6E-63 T 13-10-2018 BMD_0531 a295da285652b863d5aee8ea8fefcde6 512 Gene3D G3DSA:3.60.110.10 226 512 7.2E-59 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_0531 a295da285652b863d5aee8ea8fefcde6 512 SUPERFAMILY SSF55729 14 143 1.32E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0531 a295da285652b863d5aee8ea8fefcde6 512 Pfam PF00583 Acetyltransferase (GNAT) family 24 144 1.5E-12 T 13-10-2018 IPR000182 GNAT domain BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 2 375 37.495 T 13-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 SUPERFAMILY SSF48179 201 379 4.42E-44 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 151 366 9.0E-48 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 PRINTS PR00084 Mannitol dehydrogenase signature 116 129 1.7E-11 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 PRINTS PR00084 Mannitol dehydrogenase signature 4 14 1.7E-11 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 PRINTS PR00084 Mannitol dehydrogenase signature 152 165 1.7E-11 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 1.7E-11 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 152 164 - T 13-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 Gene3D G3DSA:3.40.50.720 2 202 5.2E-66 T 13-10-2018 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 3 124 1.6E-23 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 SUPERFAMILY SSF51735 4 188 3.82E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0198 7302f61cef7f5572218c8556827fe2c0 380 Gene3D G3DSA:1.10.1040.10 204 379 1.2E-63 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_0019 0872ca02b16d4ac213aee352dbbccb4c 226 Gene3D G3DSA:3.40.50.300 14 218 1.1E-58 T 13-10-2018 BMD_0019 0872ca02b16d4ac213aee352dbbccb4c 226 PIRSF PIRSF000705 3 222 1.1E-65 T 13-10-2018 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 BMD_0019 0872ca02b16d4ac213aee352dbbccb4c 226 Pfam PF01712 Deoxynucleoside kinase 16 215 7.5E-65 T 13-10-2018 IPR031314 Deoxynucleoside kinase domain BMD_0019 0872ca02b16d4ac213aee352dbbccb4c 226 SUPERFAMILY SSF52540 15 220 2.91E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0584 69c4ba8474413040f4dc6ccefa1e500b 114 Pfam PF08963 Protein of unknown function (DUF1878) 1 109 8.1E-32 T 13-10-2018 IPR015058 Protein of unknown function DUF1878 BMD_0584 69c4ba8474413040f4dc6ccefa1e500b 114 SUPERFAMILY SSF109915 3 111 2.22E-31 T 13-10-2018 IPR035945 YhaI-like superfamily BMD_0584 69c4ba8474413040f4dc6ccefa1e500b 114 ProDom PD073069 YHAI 3D-STRUCTURE 10 95 1.0E-14 T 13-10-2018 IPR015058 Protein of unknown function DUF1878 BMD_0584 69c4ba8474413040f4dc6ccefa1e500b 114 Gene3D G3DSA:1.10.3750.10 1 114 3.2E-38 T 13-10-2018 IPR035945 YhaI-like superfamily BMD_3270 d610b1d438a4d6086502ecc667229209 199 Gene3D G3DSA:3.40.630.30 2 192 5.7E-36 T 13-10-2018 BMD_3270 d610b1d438a4d6086502ecc667229209 199 Pfam PF13302 Acetyltransferase (GNAT) domain 10 152 3.7E-18 T 13-10-2018 IPR000182 GNAT domain BMD_3270 d610b1d438a4d6086502ecc667229209 199 SUPERFAMILY SSF55729 1 177 3.8E-31 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1016 6b4b3351e7c876d2f5ae7368ecc3490b 284 Pfam PF01380 SIS domain 130 258 2.6E-24 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_1016 6b4b3351e7c876d2f5ae7368ecc3490b 284 Gene3D G3DSA:1.10.10.10 2 82 3.5E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1016 6b4b3351e7c876d2f5ae7368ecc3490b 284 SUPERFAMILY SSF53697 100 268 2.88E-40 T 13-10-2018 BMD_1016 6b4b3351e7c876d2f5ae7368ecc3490b 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 77 8.9E-19 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BMD_1016 6b4b3351e7c876d2f5ae7368ecc3490b 284 Gene3D G3DSA:3.40.50.10490 98 283 2.6E-45 T 13-10-2018 BMD_1016 6b4b3351e7c876d2f5ae7368ecc3490b 284 SUPERFAMILY SSF46689 5 76 3.58E-19 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1652 0ce6e415c6bf59da1ecc1458b5a74e9f 347 Pfam PF01699 Sodium/calcium exchanger protein 203 340 3.1E-15 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 BMD_1652 0ce6e415c6bf59da1ecc1458b5a74e9f 347 Pfam PF01699 Sodium/calcium exchanger protein 27 178 7.0E-16 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 BMD_1652 0ce6e415c6bf59da1ecc1458b5a74e9f 347 TIGRFAM TIGR00378 cax: calcium/proton exchanger 10 345 7.1E-107 T 13-10-2018 IPR004798 Calcium/proton exchanger CAX GO:0006816|GO:0015369 BMD_1652 0ce6e415c6bf59da1ecc1458b5a74e9f 347 Gene3D G3DSA:1.20.1420.30 57 338 5.6E-23 T 13-10-2018 BMD_1652 0ce6e415c6bf59da1ecc1458b5a74e9f 347 Gene3D G3DSA:1.20.58.1130 34 235 5.6E-23 T 13-10-2018 BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 SUPERFAMILY SSF46785 14 154 3.67E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 Gene3D G3DSA:1.10.10.10 5 172 7.9E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 ProSitePatterns PS01117 MarR-type HTH domain signature. 77 111 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 Pfam PF01047 MarR family 48 102 6.9E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 6.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 6.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 6.9E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3409 5236cc23a70d66a04e7d2bb92e6e0743 223 SMART SM00347 40 136 2.2E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1256 ec6b8b5cf50f1dedfa20fe5d5b7ace5f 146 SUPERFAMILY SSF55620 13 139 1.06E-31 T 13-10-2018 BMD_1256 ec6b8b5cf50f1dedfa20fe5d5b7ace5f 146 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 16 110 3.0E-27 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BMD_1256 ec6b8b5cf50f1dedfa20fe5d5b7ace5f 146 PIRSF PIRSF006113 13 140 1.9E-23 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BMD_1256 ec6b8b5cf50f1dedfa20fe5d5b7ace5f 146 Gene3D G3DSA:3.30.479.10 13 140 2.2E-28 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 BMD_1256 ec6b8b5cf50f1dedfa20fe5d5b7ace5f 146 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 17 138 2.4E-28 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BMD_0886 8291941053b597a87a3915463f11840d 254 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0886 8291941053b597a87a3915463f11840d 254 Gene3D G3DSA:3.40.50.300 1 251 4.3E-64 T 13-10-2018 BMD_0886 8291941053b597a87a3915463f11840d 254 SMART SM00382 32 212 2.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0886 8291941053b597a87a3915463f11840d 254 Pfam PF00005 ABC transporter 24 162 2.7E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0886 8291941053b597a87a3915463f11840d 254 SUPERFAMILY SSF52540 5 214 3.19E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2136 24ee677be24e9020784e033fa54089bc 500 Gene3D G3DSA:3.40.1190.20 212 497 7.2E-83 T 13-10-2018 IPR029056 Ribokinase-like BMD_2136 24ee677be24e9020784e033fa54089bc 500 Gene3D G3DSA:3.40.50.10260 1 211 1.6E-56 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 BMD_2136 24ee677be24e9020784e033fa54089bc 500 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 4 205 4.9E-46 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BMD_2136 24ee677be24e9020784e033fa54089bc 500 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 5 204 21.885 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BMD_2136 24ee677be24e9020784e033fa54089bc 500 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 433 443 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site BMD_2136 24ee677be24e9020784e033fa54089bc 500 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 219 499 21.279 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BMD_2136 24ee677be24e9020784e033fa54089bc 500 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 314 324 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site BMD_2136 24ee677be24e9020784e033fa54089bc 500 SUPERFAMILY SSF53613 217 496 4.68E-68 T 13-10-2018 IPR029056 Ribokinase-like BMD_2136 24ee677be24e9020784e033fa54089bc 500 Pfam PF01256 Carbohydrate kinase 244 490 5.2E-60 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BMD_2136 24ee677be24e9020784e033fa54089bc 500 SUPERFAMILY SSF64153 1 240 6.02E-53 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 BMD_2136 24ee677be24e9020784e033fa54089bc 500 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 217 494 6.6E-63 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BMD_2136 24ee677be24e9020784e033fa54089bc 500 Pfam PF03853 YjeF-related protein N-terminus 25 181 2.0E-41 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BMD_2136 24ee677be24e9020784e033fa54089bc 500 PIRSF PIRSF017184 1 500 1.1E-138 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 BMD_4187 c9c9205877ae39509cd43d892c8b9152 300 Gene3D G3DSA:1.10.443.10 112 294 6.3E-57 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BMD_4187 c9c9205877ae39509cd43d892c8b9152 300 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 10 300 1.3E-105 T 13-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 BMD_4187 c9c9205877ae39509cd43d892c8b9152 300 Pfam PF00589 Phage integrase family 113 286 3.8E-46 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BMD_4187 c9c9205877ae39509cd43d892c8b9152 300 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 90 1.5E-19 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BMD_4187 c9c9205877ae39509cd43d892c8b9152 300 Gene3D G3DSA:1.10.150.130 5 99 4.3E-24 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal BMD_4187 c9c9205877ae39509cd43d892c8b9152 300 SUPERFAMILY SSF56349 4 294 1.29E-54 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BMD_4187 c9c9205877ae39509cd43d892c8b9152 300 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 300 54.117 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD BMD_1017 6dcbe7613b49ae381304f540c58b4ad4 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 79 2.4E-14 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BMD_1017 6dcbe7613b49ae381304f540c58b4ad4 101 SUPERFAMILY SSF52794 1 100 1.15E-24 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_1017 6dcbe7613b49ae381304f540c58b4ad4 101 Gene3D G3DSA:3.40.50.2300 1 101 2.0E-27 T 13-10-2018 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 Gene3D G3DSA:3.40.50.300 3 185 8.8E-52 T 13-10-2018 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 Gene3D G3DSA:3.30.300.20 186 300 3.7E-44 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 279 6.8E-112 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 4.2E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 102 4.2E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 Pfam PF01926 50S ribosome-binding GTPase 11 125 1.8E-25 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 168 3.2E-29 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 SUPERFAMILY SSF52540 11 206 1.19E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 Pfam PF07650 KH domain 208 285 9.1E-22 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 SUPERFAMILY SSF54814 182 297 3.66E-43 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BMD_4534 5d59e6ebc4d902f383bbf8f20e26dd85 301 Hamap MF_00367 GTPase Era [era]. 6 296 39.381 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0339 102c5ac6381d1f5a324f0ff25e95b50f 321 SUPERFAMILY SSF144083 248 310 7.85E-19 T 13-10-2018 BMD_0339 102c5ac6381d1f5a324f0ff25e95b50f 321 Gene3D G3DSA:1.20.58.340 237 313 1.0E-24 T 13-10-2018 BMD_0339 102c5ac6381d1f5a324f0ff25e95b50f 321 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 2 313 1.3E-83 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 BMD_0339 102c5ac6381d1f5a324f0ff25e95b50f 321 Gene3D G3DSA:1.20.58.340 124 234 6.6E-27 T 13-10-2018 BMD_0339 102c5ac6381d1f5a324f0ff25e95b50f 321 Gene3D G3DSA:3.30.460.20 1 123 1.8E-35 T 13-10-2018 BMD_0339 102c5ac6381d1f5a324f0ff25e95b50f 321 SUPERFAMILY SSF143865 2 246 4.84E-59 T 13-10-2018 BMD_0339 102c5ac6381d1f5a324f0ff25e95b50f 321 Pfam PF01544 CorA-like Mg2+ transporter protein 28 309 1.1E-73 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BMD_4172 7a364e2aa66ec8a550542d0dec9abb0b 263 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 184 261 1.6E-23 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BMD_4172 7a364e2aa66ec8a550542d0dec9abb0b 263 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 242 2.8E-56 T 13-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 BMD_4172 7a364e2aa66ec8a550542d0dec9abb0b 263 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BMD_4172 7a364e2aa66ec8a550542d0dec9abb0b 263 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 137 6.9E-43 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BMD_4172 7a364e2aa66ec8a550542d0dec9abb0b 263 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 244 7.3E-31 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BMD_4172 7a364e2aa66ec8a550542d0dec9abb0b 263 Pfam PF00460 Flagella basal body rod protein 5 35 2.1E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BMD_4172 7a364e2aa66ec8a550542d0dec9abb0b 263 SUPERFAMILY SSF117143 91 223 1.06E-36 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BMD_0860 f30eeeaa87acb7965166756df73b0632 401 Pfam PF00571 CBS domain 279 331 1.2E-6 T 13-10-2018 IPR000644 CBS domain BMD_0860 f30eeeaa87acb7965166756df73b0632 401 Pfam PF00571 CBS domain 338 390 1.2E-5 T 13-10-2018 IPR000644 CBS domain BMD_0860 f30eeeaa87acb7965166756df73b0632 401 Gene3D G3DSA:3.10.580.10 279 391 3.8E-20 T 13-10-2018 BMD_0860 f30eeeaa87acb7965166756df73b0632 401 SUPERFAMILY SSF54631 275 391 9.98E-23 T 13-10-2018 BMD_0860 f30eeeaa87acb7965166756df73b0632 401 Gene3D G3DSA:3.40.50.300 2 270 1.7E-73 T 13-10-2018 BMD_0860 f30eeeaa87acb7965166756df73b0632 401 SMART SM00116 283 331 0.0043 T 13-10-2018 IPR000644 CBS domain BMD_0860 f30eeeaa87acb7965166756df73b0632 401 SMART SM00116 343 390 0.0092 T 13-10-2018 IPR000644 CBS domain BMD_0860 f30eeeaa87acb7965166756df73b0632 401 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0860 f30eeeaa87acb7965166756df73b0632 401 SMART SM00382 54 243 9.9E-21 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0860 f30eeeaa87acb7965166756df73b0632 401 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 38 391 5.7E-155 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 BMD_0860 f30eeeaa87acb7965166756df73b0632 401 SUPERFAMILY SSF52540 44 273 9.72E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0860 f30eeeaa87acb7965166756df73b0632 401 Pfam PF00005 ABC transporter 46 193 5.4E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3917 300d25cb589a3b423ba911d9b7de5fa9 269 Pfam PF00355 Rieske [2Fe-2S] domain 4 32 7.8E-5 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BMD_3917 300d25cb589a3b423ba911d9b7de5fa9 269 Gene3D G3DSA:2.102.10.10 1 81 2.5E-15 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_3917 300d25cb589a3b423ba911d9b7de5fa9 269 SUPERFAMILY SSF55961 61 264 1.1E-27 T 13-10-2018 BMD_3917 300d25cb589a3b423ba911d9b7de5fa9 269 SUPERFAMILY SSF50022 2 61 8.25E-15 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_3917 300d25cb589a3b423ba911d9b7de5fa9 269 Gene3D G3DSA:3.30.530.90 91 265 2.1E-10 T 13-10-2018 BMD_3133 4bf48dfb9fd9cb4b47bd67b1dd0395e5 80 Pfam PF03845 Spore germination protein 6 80 2.3E-14 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 SMART SM00342 440 523 9.2E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 477 519 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 SUPERFAMILY SSF52172 1 155 3.13E-32 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 Gene3D G3DSA:3.40.50.2300 1 137 2.6E-33 T 13-10-2018 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 507 523 6.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 492 507 6.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 SMART SM00448 1 115 6.8E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 Gene3D G3DSA:1.10.10.60 421 477 8.3E-14 T 13-10-2018 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 Pfam PF12833 Helix-turn-helix domain 447 523 1.4E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 SUPERFAMILY SSF46689 476 524 3.23E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 Pfam PF00072 Response regulator receiver domain 3 112 9.1E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 Gene3D G3DSA:1.10.10.2730 478 524 3.0E-21 T 13-10-2018 BMD_0608 e31ff9914f862dd71fc9e8b96453056f 527 SUPERFAMILY SSF46689 425 473 3.49E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0556 8af5761ae47fd92422721c19d666b66d 269 Pfam PF08543 Phosphomethylpyrimidine kinase 13 257 7.5E-98 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 BMD_0556 8af5761ae47fd92422721c19d666b66d 269 SUPERFAMILY SSF53613 4 261 4.21E-85 T 13-10-2018 IPR029056 Ribokinase-like BMD_0556 8af5761ae47fd92422721c19d666b66d 269 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 259 1.1E-106 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_0556 8af5761ae47fd92422721c19d666b66d 269 Gene3D G3DSA:3.40.1190.20 1 267 1.3E-105 T 13-10-2018 IPR029056 Ribokinase-like BMD_3927 24cf867917910db40e5a4052f674f5db 165 Gene3D G3DSA:3.40.630.30 1 148 9.0E-27 T 13-10-2018 BMD_3927 24cf867917910db40e5a4052f674f5db 165 Pfam PF00583 Acetyltransferase (GNAT) family 33 142 2.3E-17 T 13-10-2018 IPR000182 GNAT domain BMD_3927 24cf867917910db40e5a4052f674f5db 165 SUPERFAMILY SSF55729 2 159 2.19E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2160 01f556d1ff291b8bbee7717e521a77bc 182 Pfam PF00857 Isochorismatase family 4 177 3.2E-35 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 BMD_2160 01f556d1ff291b8bbee7717e521a77bc 182 SUPERFAMILY SSF52499 2 181 1.03E-48 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_2160 01f556d1ff291b8bbee7717e521a77bc 182 Gene3D G3DSA:3.40.50.850 1 182 8.7E-52 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_1870 b4efb7b897d49f47ed92ab0d6d7763d0 458 PIRSF PIRSF005353 15 458 9.1E-168 T 13-10-2018 IPR026033 Purine permease PbuG-like BMD_1870 b4efb7b897d49f47ed92ab0d6d7763d0 458 Pfam PF00860 Permease family 41 415 3.8E-52 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_0918 14e0d2bea1cc7a86309c120fc8414907 176 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 BMD_0918 14e0d2bea1cc7a86309c120fc8414907 176 SUPERFAMILY SSF52218 1 172 7.08E-42 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_0918 14e0d2bea1cc7a86309c120fc8414907 176 Pfam PF03358 NADPH-dependent FMN reductase 46 104 6.2E-9 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BMD_0918 14e0d2bea1cc7a86309c120fc8414907 176 Gene3D G3DSA:3.40.50.360 1 176 6.2E-47 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_5048 d0cae4d5a7d5a1ab114a7d137978ab2d 297 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 9 291 41.992 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 BMD_5048 d0cae4d5a7d5a1ab114a7d137978ab2d 297 SUPERFAMILY SSF52540 10 164 1.97E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5048 d0cae4d5a7d5a1ab114a7d137978ab2d 297 PIRSF PIRSF005052 9 294 1.6E-108 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 BMD_5048 d0cae4d5a7d5a1ab114a7d137978ab2d 297 Pfam PF03668 P-loop ATPase protein family 9 292 1.2E-131 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 TIGRFAM TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II 8 289 4.5E-120 T 13-10-2018 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 GO:0004332|GO:0006096|GO:0008270|GO:0030388 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 SUPERFAMILY SSF51569 9 289 1.05E-96 T 13-10-2018 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 PIRSF PIRSF001359 6 289 1.0E-117 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 8 288 3.4E-105 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 Gene3D G3DSA:3.20.20.70 6 289 3.9E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 Pfam PF01116 Fructose-bisphosphate aldolase class-II 9 287 1.8E-95 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_3468 f94d77c8d5fcfa64948fc815c261b8c5 289 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 79 92 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BMD_0396 79d398ddb11f697f6f6179436bef0ce8 300 Gene3D G3DSA:3.40.50.720 1 290 2.0E-72 T 13-10-2018 BMD_0396 79d398ddb11f697f6f6179436bef0ce8 300 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 296 6.9E-107 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 BMD_0396 79d398ddb11f697f6f6179436bef0ce8 300 Pfam PF08338 Domain of unknown function (DUF1731) 253 299 4.1E-17 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 BMD_0396 79d398ddb11f697f6f6179436bef0ce8 300 SUPERFAMILY SSF51735 1 299 3.32E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0396 79d398ddb11f697f6f6179436bef0ce8 300 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 225 4.7E-14 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BMD_3712 8b1b7a8ed9d0fa258bee77799a17d7c0 95 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 95 1.1E-26 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA BMD_3712 8b1b7a8ed9d0fa258bee77799a17d7c0 95 Pfam PF12784 PD-(D/E)XK nuclease family transposase 8 95 5.6E-30 T 13-10-2018 BMD_4787 43728c495eee0228b9cae314a461a48b 530 SUPERFAMILY SSF51338 3 528 6.84E-10 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_4787 43728c495eee0228b9cae314a461a48b 530 SUPERFAMILY SSF51556 60 487 1.8E-34 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_4787 43728c495eee0228b9cae314a461a48b 530 Gene3D G3DSA:2.30.40.10 7 504 5.4E-129 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_4787 43728c495eee0228b9cae314a461a48b 530 Gene3D G3DSA:3.20.20.140 61 487 5.4E-129 T 13-10-2018 BMD_4787 43728c495eee0228b9cae314a461a48b 530 Gene3D G3DSA:3.10.310.70 79 196 5.4E-129 T 13-10-2018 BMD_4787 43728c495eee0228b9cae314a461a48b 530 Pfam PF07969 Amidohydrolase family 50 528 5.2E-117 T 13-10-2018 IPR013108 Amidohydrolase 3 BMD_3943 1c311f84c29499a88caf6563d5bd809c 213 Gene3D G3DSA:3.40.50.720 1 211 1.8E-53 T 13-10-2018 BMD_3943 1c311f84c29499a88caf6563d5bd809c 213 Pfam PF13460 NAD(P)H-binding 7 194 1.3E-23 T 13-10-2018 IPR016040 NAD(P)-binding domain BMD_3943 1c311f84c29499a88caf6563d5bd809c 213 SUPERFAMILY SSF51735 1 211 1.9E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2628 39ab54e1c217286b88eced7e59434e25 289 Gene3D G3DSA:1.10.10.10 1 82 3.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2628 39ab54e1c217286b88eced7e59434e25 289 Gene3D G3DSA:3.40.190.290 93 289 4.9E-32 T 13-10-2018 BMD_2628 39ab54e1c217286b88eced7e59434e25 289 Pfam PF03466 LysR substrate binding domain 92 288 6.8E-25 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_2628 39ab54e1c217286b88eced7e59434e25 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.2E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2628 39ab54e1c217286b88eced7e59434e25 289 SUPERFAMILY SSF46785 2 85 3.31E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2628 39ab54e1c217286b88eced7e59434e25 289 SUPERFAMILY SSF53850 93 288 1.78E-26 T 13-10-2018 BMD_2628 39ab54e1c217286b88eced7e59434e25 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.2E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2628 39ab54e1c217286b88eced7e59434e25 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.2E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2628 39ab54e1c217286b88eced7e59434e25 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.2E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3936 e0b58804e345dd84581b74e150b4b321 456 PIRSF PIRSF006060 1 456 2.2E-72 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3936 e0b58804e345dd84581b74e150b4b321 456 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_3936 e0b58804e345dd84581b74e150b4b321 456 Gene3D G3DSA:1.20.1740.10 8 454 4.4E-66 T 13-10-2018 BMD_3936 e0b58804e345dd84581b74e150b4b321 456 Pfam PF00324 Amino acid permease 16 426 2.2E-92 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 Gene3D G3DSA:3.40.50.1820 2 286 1.3E-92 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 PRINTS PR00412 Epoxide hydrolase signature 229 245 4.1E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 PRINTS PR00412 Epoxide hydrolase signature 28 46 4.1E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 PRINTS PR00412 Epoxide hydrolase signature 262 284 4.1E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 PRINTS PR00412 Epoxide hydrolase signature 107 120 4.1E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 PRINTS PR00412 Epoxide hydrolase signature 93 106 4.1E-13 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 Pfam PF00561 alpha/beta hydrolase fold 23 274 8.6E-25 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2949 c21bea223eb03b4cf5102d88dd09835b 287 SUPERFAMILY SSF53474 4 287 1.02E-65 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1103 1d477743f2a7ae2b685a5f6d037747f1 485 Pfam PF13240 zinc-ribbon domain 3 25 5.3E-6 T 13-10-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 BMD_1103 1d477743f2a7ae2b685a5f6d037747f1 485 PIRSF PIRSF032522 1 484 1.7E-38 T 13-10-2018 IPR023599 Membrane-associated protein TcaA GO:0016021|GO:0046677 BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 SUPERFAMILY SSF54747 2 84 1.44E-30 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 SUPERFAMILY SSF46906 67 140 9.29E-28 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 1.3E-26 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 Gene3D G3DSA:1.10.10.250 72 140 4.4E-30 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 2.5E-31 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.92 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 SMART SM00649 9 140 7.9E-89 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 Gene3D G3DSA:3.30.1550.10 2 71 3.9E-34 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 3.0E-16 T 13-10-2018 BMD_0121 821ad309cd16128ba2e3853719da1fb8 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 3.4E-65 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 SUPERFAMILY SSF56784 1 211 3.2E-59 T 13-10-2018 IPR036412 HAD-like superfamily BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 3.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 94 107 3.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 3.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 3.9E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 Hamap MF_01250 Pyrophosphatase PpaX [ppaX]. 1 214 44.343 T 13-10-2018 IPR023733 Pyrophosphatase PpaX GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 181 5.5E-56 T 13-10-2018 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 174 5.8E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 Gene3D G3DSA:3.40.50.1000 6 185 8.3E-52 T 13-10-2018 IPR023214 HAD superfamily BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 Gene3D G3DSA:1.10.150.240 18 80 8.3E-52 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_5061 eb1aa8e808eb3aba3b67c61b1169e780 215 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 117 179 8.5E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_4712 84d3094e2c12d302b56e129935c6e6b5 175 SUPERFAMILY SSF111126 33 142 5.75E-21 T 13-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily BMD_4712 84d3094e2c12d302b56e129935c6e6b5 175 Gene3D G3DSA:3.30.1380.20 5 164 1.0E-52 T 13-10-2018 BMD_4712 84d3094e2c12d302b56e129935c6e6b5 175 Pfam PF10702 Protein of unknown function (DUF2507) 36 157 1.7E-44 T 13-10-2018 IPR019642 Protein of unknown function DUF2507 BMD_4084 bae81579921897f4e1462ec65bda7251 346 SUPERFAMILY SSF47090 271 339 5.49E-17 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_4084 bae81579921897f4e1462ec65bda7251 346 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 4 176 4.7E-42 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_4084 bae81579921897f4e1462ec65bda7251 346 Gene3D G3DSA:1.10.101.10 265 343 4.5E-20 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_4084 bae81579921897f4e1462ec65bda7251 346 SMART SM00257 208 253 1.0E-17 T 13-10-2018 IPR018392 LysM domain BMD_4084 bae81579921897f4e1462ec65bda7251 346 SMART SM00646 65 176 6.0E-35 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_4084 bae81579921897f4e1462ec65bda7251 346 Pfam PF01476 LysM domain 209 253 2.3E-16 T 13-10-2018 IPR018392 LysM domain BMD_4084 bae81579921897f4e1462ec65bda7251 346 Gene3D G3DSA:3.40.630.40 1 182 1.1E-49 T 13-10-2018 BMD_4084 bae81579921897f4e1462ec65bda7251 346 SUPERFAMILY SSF53187 1 181 9.42E-47 T 13-10-2018 BMD_4084 bae81579921897f4e1462ec65bda7251 346 Pfam PF01471 Putative peptidoglycan binding domain 281 338 3.9E-13 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_4084 bae81579921897f4e1462ec65bda7251 346 SUPERFAMILY SSF54106 207 253 3.79E-11 T 13-10-2018 BMD_4084 bae81579921897f4e1462ec65bda7251 346 Gene3D G3DSA:3.10.350.10 193 264 9.8E-20 T 13-10-2018 IPR036779 LysM domain superfamily BMD_2078 9efacecc61a61fc93adfcc393ef662e1 354 Gene3D G3DSA:3.40.190.10 51 320 6.7E-133 T 13-10-2018 BMD_2078 9efacecc61a61fc93adfcc393ef662e1 354 Pfam PF13531 Bacterial extracellular solute-binding protein 57 305 7.1E-42 T 13-10-2018 BMD_2078 9efacecc61a61fc93adfcc393ef662e1 354 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 44 350 2.3E-146 T 13-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 BMD_2078 9efacecc61a61fc93adfcc393ef662e1 354 SUPERFAMILY SSF53850 45 352 2.99E-84 T 13-10-2018 BMD_2078 9efacecc61a61fc93adfcc393ef662e1 354 Gene3D G3DSA:3.40.190.10 139 349 6.7E-133 T 13-10-2018 BMD_2078 9efacecc61a61fc93adfcc393ef662e1 354 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 170 178 - T 13-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 BMD_2078 9efacecc61a61fc93adfcc393ef662e1 354 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 72 84 - T 13-10-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site BMD_2934 8cc2c634e231cd014060fe2b32c58568 162 Pfam PF14526 Integron-associated effector binding protein 11 162 1.5E-22 T 13-10-2018 IPR029441 Integron-associated effector binding protein BMD_2934 8cc2c634e231cd014060fe2b32c58568 162 SMART SM00871 7 162 8.4E-19 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding BMD_2934 8cc2c634e231cd014060fe2b32c58568 162 Gene3D G3DSA:3.20.80.10 5 162 1.8E-34 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_2934 8cc2c634e231cd014060fe2b32c58568 162 SUPERFAMILY SSF55136 10 162 5.49E-19 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_4666 e1e27ae329e3cda646afce2877fc01a1 383 TIGRFAM TIGR02907 spore_VI_D: stage VI sporulation protein D 9 381 4.9E-81 T 13-10-2018 IPR014256 Sporulation stage VI, protein D BMD_4666 e1e27ae329e3cda646afce2877fc01a1 383 SMART SM00257 337 381 4.4E-7 T 13-10-2018 IPR018392 LysM domain BMD_4666 e1e27ae329e3cda646afce2877fc01a1 383 Pfam PF01476 LysM domain 339 381 1.8E-9 T 13-10-2018 IPR018392 LysM domain BMD_4666 e1e27ae329e3cda646afce2877fc01a1 383 Gene3D G3DSA:3.10.350.10 326 383 3.6E-11 T 13-10-2018 IPR036779 LysM domain superfamily BMD_4666 e1e27ae329e3cda646afce2877fc01a1 383 SUPERFAMILY SSF54106 337 382 1.44E-8 T 13-10-2018 BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 Pfam PF00005 ABC transporter 24 166 3.6E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 SMART SM00382 33 216 3.0E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 Gene3D G3DSA:2.40.50.940 227 345 4.1E-12 T 13-10-2018 BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 Pfam PF08402 TOBE domain 278 346 8.4E-7 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 SUPERFAMILY SSF52540 7 248 3.14E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 SUPERFAMILY SSF50331 241 346 2.72E-12 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 Gene3D G3DSA:2.40.50.140 284 338 4.1E-12 T 13-10-2018 BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 Gene3D G3DSA:3.40.50.300 7 226 1.2E-69 T 13-10-2018 BMD_0204 8d5f77f4c854d11c0b6a7a3db68d2fb0 369 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2675 89ad5cac72412464ef219d0f279932aa 210 Gene3D G3DSA:2.40.50.100 48 112 1.3E-11 T 13-10-2018 BMD_2675 89ad5cac72412464ef219d0f279932aa 210 Gene3D G3DSA:2.40.30.170 113 210 4.0E-21 T 13-10-2018 BMD_2675 89ad5cac72412464ef219d0f279932aa 210 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 32 165 3.2E-18 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BMD_2675 89ad5cac72412464ef219d0f279932aa 210 SUPERFAMILY SSF51230 41 112 1.44E-10 T 13-10-2018 IPR011053 Single hybrid motif BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 7 361 1.3E-89 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 Gene3D G3DSA:3.30.70.360 173 287 4.0E-122 T 13-10-2018 BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 Hamap MF_01692 N-acetyldiaminopimelate deacetylase. 3 372 63.277 T 13-10-2018 IPR023905 Acetyldiaminopimelate deacetylase GO:0009089|GO:0050118 KEGG: 00300+3.5.1.47|MetaCyc: PWY-2941 BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 Pfam PF01546 Peptidase family M20/M25/M40 67 350 2.6E-25 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 SUPERFAMILY SSF53187 3 367 5.54E-69 T 13-10-2018 BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 PIRSF PIRSF005962 1 375 4.9E-113 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 Gene3D G3DSA:3.40.630.10 7 357 4.0E-122 T 13-10-2018 BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 SUPERFAMILY SSF55031 178 283 1.01E-29 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_1311 9e20ef34e839d5f40b5815d96581ff43 375 Pfam PF07687 Peptidase dimerisation domain 180 271 4.2E-11 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 Gene3D G3DSA:1.20.1260.110 146 291 2.0E-41 T 13-10-2018 IPR038331 DisA, linker domain superfamily BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 28 139 4.1E-26 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 Pfam PF00633 Helix-hairpin-helix motif 318 344 1.2E-5 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 SUPERFAMILY SSF47781 279 354 5.56E-13 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 Gene3D G3DSA:1.10.150.20 292 356 1.1E-23 T 13-10-2018 BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 Pfam PF10635 DisA bacterial checkpoint controller linker region 145 281 2.5E-48 T 13-10-2018 IPR018906 DNA integrity scanning, DisA, linker region BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 Hamap MF_01438 DNA integrity scanning protein DisA [disA]. 8 356 44.22 T 13-10-2018 IPR023763 DNA integrity scanning protein, DisA BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 SUPERFAMILY SSF143597 17 145 1.27E-29 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily BMD_0107 32bdfcc5a6a43a86aeffead455a70f85 359 Gene3D G3DSA:3.40.1700.10 9 145 9.1E-56 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily BMD_1433 d782d5e50434c7a233f6da16854066f1 436 TIGRFAM TIGR03173 pbuX: xanthine permease 9 415 2.1E-167 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 BMD_1433 d782d5e50434c7a233f6da16854066f1 436 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 5 413 6.2E-142 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BMD_1433 d782d5e50434c7a233f6da16854066f1 436 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 330 350 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BMD_1433 d782d5e50434c7a233f6da16854066f1 436 Pfam PF00860 Permease family 5 383 9.0E-120 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_4328 687cb3c5314548669cc0c2ae7dae1d15 404 Pfam PF07690 Major Facilitator Superfamily 14 355 7.9E-60 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_4328 687cb3c5314548669cc0c2ae7dae1d15 404 SUPERFAMILY SSF103473 6 395 4.19E-78 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4328 687cb3c5314548669cc0c2ae7dae1d15 404 Gene3D G3DSA:1.20.1250.20 5 200 4.5E-41 T 13-10-2018 BMD_4328 687cb3c5314548669cc0c2ae7dae1d15 404 Gene3D G3DSA:1.20.1250.20 204 396 3.9E-34 T 13-10-2018 BMD_2871 4c906a076390001d84f97d1d7158ccd7 186 Gene3D G3DSA:1.25.40.10 31 185 3.1E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_2871 4c906a076390001d84f97d1d7158ccd7 186 SUPERFAMILY SSF48452 40 165 3.41E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3466 acef67e2913ff9880478dc83fa016381 640 Gene3D G3DSA:3.40.50.1220 213 404 1.3E-37 T 13-10-2018 BMD_3466 acef67e2913ff9880478dc83fa016381 640 SUPERFAMILY SSF52518 416 627 7.56E-49 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_3466 acef67e2913ff9880478dc83fa016381 640 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 638 1.9E-289 T 13-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 BMD_3466 acef67e2913ff9880478dc83fa016381 640 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 196 1.6E-35 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BMD_3466 acef67e2913ff9880478dc83fa016381 640 SUPERFAMILY SSF52518 1 208 4.63E-33 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_3466 acef67e2913ff9880478dc83fa016381 640 SUPERFAMILY SSF52467 186 361 9.63E-39 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_3466 acef67e2913ff9880478dc83fa016381 640 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 472 491 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BMD_3466 acef67e2913ff9880478dc83fa016381 640 Gene3D G3DSA:3.40.50.970 1 212 2.0E-31 T 13-10-2018 BMD_3466 acef67e2913ff9880478dc83fa016381 640 Gene3D G3DSA:3.40.50.970 410 607 1.9E-41 T 13-10-2018 BMD_3466 acef67e2913ff9880478dc83fa016381 640 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 436 595 4.2E-37 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BMD_3466 acef67e2913ff9880478dc83fa016381 640 Hamap MF_01669 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [iolD]. 1 640 56.552 T 13-10-2018 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes GO:0000287|GO:0016787|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 BMD_3466 acef67e2913ff9880478dc83fa016381 640 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 219 351 2.4E-31 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 Gene3D G3DSA:1.20.210.10 34 564 6.9E-197 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 TIGRFAM TIGR02882 QoxB: cytochrome aa3 quinol oxidase, subunit I 10 649 0.0 T 13-10-2018 IPR014233 Quinol oxidase subunit I GO:0005507|GO:0016021|GO:0016682|GO:0020037|GO:0055114 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 SUPERFAMILY SSF81442 48 558 3.92E-175 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 50 75 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 3.3E-92 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1862 48aa14ee5c78e3373f2e1dc552dcd1a7 655 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 59 504 4.4E-143 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_2622 90f487a9e56a018bb6b8e3c0eb9e6d35 407 PIRSF PIRSF002808 3 405 3.5E-36 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BMD_2622 90f487a9e56a018bb6b8e3c0eb9e6d35 407 Pfam PF07690 Major Facilitator Superfamily 12 358 7.0E-62 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2622 90f487a9e56a018bb6b8e3c0eb9e6d35 407 SUPERFAMILY SSF103473 6 396 9.81E-89 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2622 90f487a9e56a018bb6b8e3c0eb9e6d35 407 Gene3D G3DSA:1.20.1250.20 200 397 2.3E-37 T 13-10-2018 BMD_2622 90f487a9e56a018bb6b8e3c0eb9e6d35 407 Gene3D G3DSA:1.20.1250.20 3 197 1.4E-49 T 13-10-2018 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 TIGRFAM TIGR00836 amt: ammonium transporter 5 403 1.5E-143 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 SUPERFAMILY SSF111352 3 383 3.66E-123 T 13-10-2018 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 Pfam PF00909 Ammonium Transporter Family 7 403 4.3E-132 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 ProSitePatterns PS01219 Ammonium transporters signature. 160 185 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 Gene3D G3DSA:1.10.3430.10 1 408 3.8E-144 T 13-10-2018 IPR029020 Ammonium/urea transporter BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 PRINTS PR00342 Rhesus blood group protein signature 228 250 3.5E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 PRINTS PR00342 Rhesus blood group protein signature 103 119 3.5E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 PRINTS PR00342 Rhesus blood group protein signature 283 301 3.5E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BMD_2944 b2f743fd9771fc252c425eafba66d16b 408 PRINTS PR00342 Rhesus blood group protein signature 197 215 3.5E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BMD_0054 db7066ab0aa5f707bfe6f6d327dfd6d6 94 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 50 2.5E-11 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_0054 db7066ab0aa5f707bfe6f6d327dfd6d6 94 SMART SM00966 8 51 6.7E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_0054 db7066ab0aa5f707bfe6f6d327dfd6d6 94 SUPERFAMILY SSF89447 1 52 1.7E-16 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily BMD_0054 db7066ab0aa5f707bfe6f6d327dfd6d6 94 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 49 1.9E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_0054 db7066ab0aa5f707bfe6f6d327dfd6d6 94 Gene3D G3DSA:2.10.260.10 1 51 3.7E-26 T 13-10-2018 BMD_0680 09ddab9dc5fd809097f5625a76e58e87 274 PIRSF PIRSF000728 1 251 1.9E-90 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_0680 09ddab9dc5fd809097f5625a76e58e87 274 Gene3D G3DSA:3.40.1160.10 3 242 1.2E-75 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_0680 09ddab9dc5fd809097f5625a76e58e87 274 SUPERFAMILY SSF53633 4 254 8.38E-66 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BMD_0680 09ddab9dc5fd809097f5625a76e58e87 274 Pfam PF00696 Amino acid kinase family 5 227 2.3E-43 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BMD_0680 09ddab9dc5fd809097f5625a76e58e87 274 TIGRFAM TIGR00761 argB: acetylglutamate kinase 7 234 1.4E-80 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_0680 09ddab9dc5fd809097f5625a76e58e87 274 Hamap MF_00082 Acetylglutamate kinase [argB]. 4 252 45.599 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BMD_1603 5ed38b5f43e878727e724c4a6c7bd102 390 PIRSF PIRSF001238 1 390 9.2E-165 T 13-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 BMD_1603 5ed38b5f43e878727e724c4a6c7bd102 390 Gene3D G3DSA:2.30.40.10 4 390 1.8E-152 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1603 5ed38b5f43e878727e724c4a6c7bd102 390 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 2 390 3.5E-173 T 13-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 BMD_1603 5ed38b5f43e878727e724c4a6c7bd102 390 Pfam PF01979 Amidohydrolase family 53 376 7.8E-19 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_1603 5ed38b5f43e878727e724c4a6c7bd102 390 SUPERFAMILY SSF51338 2 389 1.49E-16 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1603 5ed38b5f43e878727e724c4a6c7bd102 390 Gene3D G3DSA:3.20.20.140 58 343 1.8E-152 T 13-10-2018 BMD_1603 5ed38b5f43e878727e724c4a6c7bd102 390 SUPERFAMILY SSF51556 57 347 1.69E-73 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_4207 c54dd86818e4e03fe6d89bcf0dbb3ff0 77 Pfam PF00550 Phosphopantetheine attachment site 6 73 3.0E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain BMD_4207 c54dd86818e4e03fe6d89bcf0dbb3ff0 77 SUPERFAMILY SSF47336 2 76 9.03E-24 T 13-10-2018 IPR036736 ACP-like superfamily BMD_4207 c54dd86818e4e03fe6d89bcf0dbb3ff0 77 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 1.1E-34 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BMD_4207 c54dd86818e4e03fe6d89bcf0dbb3ff0 77 Gene3D G3DSA:1.10.1200.10 1 76 1.3E-29 T 13-10-2018 IPR036736 ACP-like superfamily BMD_4207 c54dd86818e4e03fe6d89bcf0dbb3ff0 77 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.776 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BMD_1142 cad5a593e03ff6daa7a090014aafb4e2 256 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 9 23 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_1142 cad5a593e03ff6daa7a090014aafb4e2 256 Gene3D G3DSA:3.40.1010.10 2 119 3.7E-46 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_1142 cad5a593e03ff6daa7a090014aafb4e2 256 Gene3D G3DSA:3.30.950.10 120 256 6.5E-51 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BMD_1142 cad5a593e03ff6daa7a090014aafb4e2 256 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 216 3.4E-50 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_1142 cad5a593e03ff6daa7a090014aafb4e2 256 SUPERFAMILY SSF53790 2 248 1.05E-84 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_1142 cad5a593e03ff6daa7a090014aafb4e2 256 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_1142 cad5a593e03ff6daa7a090014aafb4e2 256 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 239 7.5E-101 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_1376 6f22f5445d388e13e8abb4ab438465e7 56 PIRSF PIRSF036698 1 56 9.4E-36 T 13-10-2018 IPR012190 Uncharacterised conserved protein UCP036698, YpmA BMD_1376 6f22f5445d388e13e8abb4ab438465e7 56 Pfam PF14084 Protein of unknown function (DUF4264) 5 56 1.2E-24 T 13-10-2018 IPR012190 Uncharacterised conserved protein UCP036698, YpmA BMD_0922 486e4921180db1459e84341135c90352 292 Hamap MF_01987 Ribokinase [rbsK]. 2 291 24.672 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 BMD_0922 486e4921180db1459e84341135c90352 292 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 236 249 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_0922 486e4921180db1459e84341135c90352 292 Pfam PF00294 pfkB family carbohydrate kinase 1 284 1.3E-73 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_0922 486e4921180db1459e84341135c90352 292 SUPERFAMILY SSF53613 3 290 1.23E-78 T 13-10-2018 IPR029056 Ribokinase-like BMD_0922 486e4921180db1459e84341135c90352 292 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 4 290 3.8E-107 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 BMD_0922 486e4921180db1459e84341135c90352 292 Gene3D G3DSA:3.40.1190.20 1 292 1.6E-91 T 13-10-2018 IPR029056 Ribokinase-like BMD_0922 486e4921180db1459e84341135c90352 292 PRINTS PR00990 Ribokinase signature 6 27 1.5E-33 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_0922 486e4921180db1459e84341135c90352 292 PRINTS PR00990 Ribokinase signature 33 52 1.5E-33 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_0922 486e4921180db1459e84341135c90352 292 PRINTS PR00990 Ribokinase signature 207 218 1.5E-33 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_0922 486e4921180db1459e84341135c90352 292 PRINTS PR00990 Ribokinase signature 172 187 1.5E-33 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_0922 486e4921180db1459e84341135c90352 292 PRINTS PR00990 Ribokinase signature 104 117 1.5E-33 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 Pfam PF00270 DEAD/DEAH box helicase 28 196 3.4E-44 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 Gene3D G3DSA:3.40.50.300 220 439 1.5E-43 T 13-10-2018 BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 SUPERFAMILY SSF52540 72 359 7.16E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 SMART SM00490 260 341 1.8E-29 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 Hamap MF_01494 DEAD-box ATP-dependent RNA helicase CshB [cshB]. 4 438 49.427 T 13-10-2018 IPR030881 DEAD-box ATP-dependent RNA helicase CshB GO:0004386|GO:0009409 BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 Pfam PF00271 Helicase conserved C-terminal domain 233 341 8.2E-27 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 SMART SM00487 23 224 2.8E-53 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_4521 70ed6c3ca09c5db43e4d954b3a66566d 439 Gene3D G3DSA:3.40.50.300 2 219 7.3E-68 T 13-10-2018 BMD_3038 8e87eccb8fbadccf61d80a3511da41b5 104 TIGRFAM TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family 2 101 2.3E-34 T 13-10-2018 IPR002767 Thiamine-binding protein BMD_3038 8e87eccb8fbadccf61d80a3511da41b5 104 SUPERFAMILY SSF89957 1 102 5.1E-31 T 13-10-2018 IPR029756 MTH1187/YkoF-like BMD_3038 8e87eccb8fbadccf61d80a3511da41b5 104 Gene3D G3DSA:3.30.70.930 1 103 6.2E-37 T 13-10-2018 IPR029756 MTH1187/YkoF-like BMD_3038 8e87eccb8fbadccf61d80a3511da41b5 104 Pfam PF01910 Thiamine-binding protein 4 98 1.7E-33 T 13-10-2018 IPR002767 Thiamine-binding protein BMD_5243 b11495047e0442592e939502edf52aa5 455 Pfam PF07435 YycH protein 6 455 2.6E-89 T 13-10-2018 IPR009996 Regulatory protein YycH BMD_5243 b11495047e0442592e939502edf52aa5 455 Gene3D G3DSA:3.10.450.310 203 407 3.7E-63 T 13-10-2018 BMD_5243 b11495047e0442592e939502edf52aa5 455 Gene3D G3DSA:3.30.310.160 225 369 3.7E-63 T 13-10-2018 BMD_1806 83f62ceaf087263b3768f152e404d644 278 SUPERFAMILY SSF52091 161 253 2.35E-9 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1806 83f62ceaf087263b3768f152e404d644 278 Gene3D G3DSA:3.30.750.24 158 277 8.5E-30 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1806 83f62ceaf087263b3768f152e404d644 278 Pfam PF01740 STAS domain 168 270 2.4E-5 T 13-10-2018 IPR002645 STAS domain BMD_2323 2a9c42d08144f1e72dc5d76d9c37f79b 247 SUPERFAMILY SSF142823 4 236 7.72E-57 T 13-10-2018 IPR036702 ComB-like superfamily GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 BMD_2323 2a9c42d08144f1e72dc5d76d9c37f79b 247 Gene3D G3DSA:3.90.1560.10 1 238 1.0E-71 T 13-10-2018 IPR036702 ComB-like superfamily GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 BMD_2323 2a9c42d08144f1e72dc5d76d9c37f79b 247 Pfam PF04029 2-phosphosulpholactate phosphatase 11 233 1.2E-62 T 13-10-2018 IPR005238 ComB-like GO:0000287|GO:0050532 KEGG: 00680+3.1.3.71 BMD_1500 3e160834c64064d0e3d6ed95d420e224 153 SUPERFAMILY SSF46785 11 146 1.96E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1500 3e160834c64064d0e3d6ed95d420e224 153 Gene3D G3DSA:1.10.10.10 1 148 1.1E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1500 3e160834c64064d0e3d6ed95d420e224 153 Pfam PF01047 MarR family 38 96 2.9E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1500 3e160834c64064d0e3d6ed95d420e224 153 SMART SM00347 31 131 1.7E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1500 3e160834c64064d0e3d6ed95d420e224 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 4.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1500 3e160834c64064d0e3d6ed95d420e224 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 4.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1500 3e160834c64064d0e3d6ed95d420e224 153 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 4.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 Gene3D G3DSA:3.40.50.300 338 549 1.7E-45 T 13-10-2018 BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 Pfam PF00271 Helicase conserved C-terminal domain 360 466 2.9E-19 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 SUPERFAMILY SSF52540 168 519 8.46E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 SUPERFAMILY SSF52540 25 259 6.99E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 SMART SM00490 386 466 6.6E-19 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 Gene3D G3DSA:3.40.50.10810 58 281 9.7E-60 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 Pfam PF00176 SNF2 family N-terminal domain 79 300 2.6E-35 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 BMD_4472 16d085f058d1a5a76541fd662c4299f8 557 SMART SM00487 56 232 6.1E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_2499 be6a69469e6ed32782210b83f37760bb 308 Gene3D G3DSA:3.10.310.20 190 308 1.4E-37 T 13-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_2499 be6a69469e6ed32782210b83f37760bb 308 SMART SM01131 181 307 9.5E-51 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_2499 be6a69469e6ed32782210b83f37760bb 308 SUPERFAMILY SSF64182 3 306 3.27E-83 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily BMD_2499 be6a69469e6ed32782210b83f37760bb 308 Pfam PF01368 DHH family 3 146 4.6E-31 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_2499 be6a69469e6ed32782210b83f37760bb 308 Gene3D G3DSA:3.90.1640.10 1 188 3.2E-81 T 13-10-2018 BMD_2499 be6a69469e6ed32782210b83f37760bb 308 Hamap MF_00207 Probable manganese-dependent inorganic pyrophosphatase [ppaC]. 3 308 46.075 T 13-10-2018 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable GO:0004427 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_2499 be6a69469e6ed32782210b83f37760bb 308 Pfam PF02833 DHHA2 domain 183 305 5.4E-19 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_1717 ead2a8d2a75ecd1695d7d7c4b032c397 113 SUPERFAMILY SSF56601 12 95 1.05E-6 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_1717 ead2a8d2a75ecd1695d7d7c4b032c397 113 Gene3D G3DSA:3.40.710.10 7 97 8.6E-9 T 13-10-2018 BMD_3110 49b6a001ea235bf1bbcb404e47b1dc26 139 Gene3D G3DSA:1.10.10.10 1 139 2.2E-46 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3110 49b6a001ea235bf1bbcb404e47b1dc26 139 SUPERFAMILY SSF46785 2 135 2.21E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3110 49b6a001ea235bf1bbcb404e47b1dc26 139 Pfam PF02082 Transcriptional regulator 2 80 2.4E-21 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 Pfam PF00005 ABC transporter 21 162 1.1E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 SUPERFAMILY SSF52540 4 243 9.64E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 SUPERFAMILY SSF50331 237 359 1.31E-25 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 SMART SM00382 29 212 1.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 Gene3D G3DSA:2.40.50.100 240 355 4.7E-23 T 13-10-2018 BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 Gene3D G3DSA:3.40.50.300 1 239 1.4E-76 T 13-10-2018 BMD_1428 2c1fdc94b5c373c15241aabde7be1546 363 Gene3D G3DSA:2.40.50.140 298 343 4.7E-23 T 13-10-2018 BMD_3563 66c21b00f30a16cb13d03782f13334d6 334 Gene3D G3DSA:3.40.960.10 15 129 2.5E-9 T 13-10-2018 BMD_1137 0a50b5c080c34decc5d89e5fa5a83a8d 159 Pfam PF06338 ComK protein 5 148 1.3E-28 T 13-10-2018 IPR010461 Competence protein ComK GO:0030420 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:1.10.150.870 1287 1422 3.4E-52 T 13-10-2018 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 416 634 1.7E-62 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 SMART SM00479 420 586 1.7E-54 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 SUPERFAMILY SSF50249 235 320 2.91E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:3.20.20.140 588 802 7.8E-60 T 13-10-2018 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Pfam PF00929 Exonuclease 422 576 4.6E-41 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 824 1245 2.7E-96 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 SMART SM00481 335 402 2.8E-26 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Pfam PF11490 DNA polymerase III polC-type N-terminus II 97 205 6.5E-25 T 13-10-2018 IPR024754 DNA polymerase III polC-like, N-terminal domain II KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:3.30.1900.20 972 1094 1.6E-58 T 13-10-2018 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:2.40.50.140 221 320 4.2E-31 T 13-10-2018 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:1.10.100.20 994 1041 1.6E-58 T 13-10-2018 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:3.30.420.10 413 587 3.8E-51 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 TIGRFAM TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type 230 1436 0.0 T 13-10-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 SUPERFAMILY SSF53098 420 876 4.25E-108 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Pfam PF14480 DNA polymerase III polC-type N-terminus I 11 83 3.6E-21 T 13-10-2018 IPR028112 DNA polymerase III polC-type, N-terminal domain I KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:1.10.150.700 1229 1285 3.8E-15 T 13-10-2018 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Gene3D G3DSA:1.10.150.700 1095 1183 1.3E-36 T 13-10-2018 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Pfam PF02811 PHP domain 336 694 2.7E-52 T 13-10-2018 IPR004013 PHP domain GO:0003824 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Hamap MF_00356 DNA polymerase III PolC-type [polC]. 1 1436 452.844 T 13-10-2018 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type GO:0003677|GO:0003887|GO:0005737|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_4143 cbae73ca0890c2c0734dd1c0b6ba8395 1436 Pfam PF14579 Helix-hairpin-helix motif 1351 1428 3.8E-9 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BMD_2739 bc05dc33b784f9c72d586d9a4b4ac3eb 310 Gene3D G3DSA:1.10.3720.10 67 309 1.1E-70 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2739 bc05dc33b784f9c72d586d9a4b4ac3eb 310 SUPERFAMILY SSF160964 30 74 2.09E-6 T 13-10-2018 BMD_2739 bc05dc33b784f9c72d586d9a4b4ac3eb 310 SUPERFAMILY SSF161098 71 296 4.58E-62 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2739 bc05dc33b784f9c72d586d9a4b4ac3eb 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 299 3.4E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_3846 a66989674dcfcf143d473ba3266501ac 243 SMART SM00422 4 73 4.6E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3846 a66989674dcfcf143d473ba3266501ac 243 Gene3D G3DSA:1.10.1660.10 3 129 4.6E-26 T 13-10-2018 BMD_3846 a66989674dcfcf143d473ba3266501ac 243 Pfam PF13411 MerR HTH family regulatory protein 4 71 1.6E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3846 a66989674dcfcf143d473ba3266501ac 243 SUPERFAMILY SSF46955 3 102 1.61E-22 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_3846 a66989674dcfcf143d473ba3266501ac 243 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 29 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1150 12b106976d4753f2e708457f4117f310 276 Gene3D G3DSA:1.10.260.150 39 274 3.8E-31 T 13-10-2018 BMD_1150 12b106976d4753f2e708457f4117f310 276 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 76 203 1.2E-16 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_5195 b181fadf2c4b94a22ac4c7ccba7631e0 148 Pfam PF12638 Staygreen protein 5 145 7.1E-21 T 13-10-2018 IPR024438 Staygreen protein BMD_2657 1c34813726e530b3a787ed9683a6792c 290 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 35 260 3.9E-47 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BMD_2657 1c34813726e530b3a787ed9683a6792c 290 SUPERFAMILY SSF51695 31 261 3.29E-74 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_2657 1c34813726e530b3a787ed9683a6792c 290 Gene3D G3DSA:3.20.20.190 16 270 2.5E-84 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_2067 575c9e3d8005a77c311ca1a90a0afc98 290 SUPERFAMILY SSF52091 164 269 5.3E-17 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2067 575c9e3d8005a77c311ca1a90a0afc98 290 Gene3D G3DSA:3.30.750.24 158 274 2.1E-35 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2067 575c9e3d8005a77c311ca1a90a0afc98 290 Pfam PF01740 STAS domain 164 260 4.6E-13 T 13-10-2018 IPR002645 STAS domain BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 Pfam PF02311 AraC-like ligand binding domain 42 126 1.9E-12 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 Pfam PF12833 Helix-turn-helix domain 211 287 5.4E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 SUPERFAMILY SSF46689 188 238 1.7E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 Gene3D G3DSA:2.60.120.10 9 116 9.5E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 241 283 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 SUPERFAMILY SSF51215 33 167 1.57E-15 T 13-10-2018 IPR037923 Transcription regulator HTH-like BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 Gene3D G3DSA:1.10.10.60 187 237 3.7E-13 T 13-10-2018 BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 SUPERFAMILY SSF46689 241 288 8.51E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 Gene3D G3DSA:1.10.10.60 238 294 1.0E-14 T 13-10-2018 BMD_3457 9af7d38b749051bc6313699b72a54bf6 300 SMART SM00342 204 287 5.9E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_0020 27873c48c6d761fe97a59a7d0a4a235d 211 Gene3D G3DSA:3.40.50.300 5 208 8.3E-48 T 13-10-2018 BMD_0020 27873c48c6d761fe97a59a7d0a4a235d 211 Pfam PF01712 Deoxynucleoside kinase 7 204 8.3E-50 T 13-10-2018 IPR031314 Deoxynucleoside kinase domain BMD_0020 27873c48c6d761fe97a59a7d0a4a235d 211 PIRSF PIRSF000705 1 210 1.0E-57 T 13-10-2018 IPR002624 Deoxynucleoside kinase GO:0005524|GO:0006139|GO:0019206 BMD_0020 27873c48c6d761fe97a59a7d0a4a235d 211 SUPERFAMILY SSF52540 1 205 7.13E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1456 746a7ec66f535831c25b0539080e4707 274 PIRSF PIRSF015853 1 271 8.8E-104 T 13-10-2018 IPR007035 Peptidase M55, D-aminopeptidase BMD_1456 746a7ec66f535831c25b0539080e4707 274 Gene3D G3DSA:3.40.50.10780 1 213 8.3E-98 T 13-10-2018 IPR027476 D-aminopeptidase, N-terminal BMD_1456 746a7ec66f535831c25b0539080e4707 274 SUPERFAMILY SSF63992 1 274 4.84E-99 T 13-10-2018 IPR036177 Peptidase M55, D-aminopeptidase superfamily BMD_1456 746a7ec66f535831c25b0539080e4707 274 Gene3D G3DSA:3.30.1360.130 118 261 8.3E-98 T 13-10-2018 BMD_1456 746a7ec66f535831c25b0539080e4707 274 Pfam PF04951 D-aminopeptidase 1 262 3.2E-92 T 13-10-2018 IPR007035 Peptidase M55, D-aminopeptidase BMD_1531 62572d0762874574323baf4041039bde 457 PIRSF PIRSF006060 6 457 2.4E-91 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1531 62572d0762874574323baf4041039bde 457 Pfam PF13520 Amino acid permease 26 430 5.2E-62 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1531 62572d0762874574323baf4041039bde 457 Gene3D G3DSA:1.20.1740.10 20 456 1.3E-126 T 13-10-2018 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 3 45 2.9E-12 T 13-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 Hamap MF_00206 Lipoyl synthase [lipA]. 1 295 148.706 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 Gene3D G3DSA:3.20.20.70 14 268 1.4E-23 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 PIRSF PIRSF005963 1 299 1.8E-138 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 TIGRFAM TIGR00510 lipA: lipoyl synthase 3 292 9.2E-123 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 SMART SM00729 57 265 3.1E-19 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 SUPERFAMILY SSF102114 20 287 5.1E-66 T 13-10-2018 BMD_4971 51e0963ffa9ccd40f576fee6f40e46d1 299 Pfam PF04055 Radical SAM superfamily 63 224 3.5E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_2024 37622c78d393f54c0ab9852b9863b492 257 SMART SM00382 26 216 8.7E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2024 37622c78d393f54c0ab9852b9863b492 257 SUPERFAMILY SSF52540 1 238 4.62E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2024 37622c78d393f54c0ab9852b9863b492 257 Pfam PF00005 ABC transporter 17 168 9.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2024 37622c78d393f54c0ab9852b9863b492 257 Gene3D G3DSA:3.40.50.300 1 246 5.8E-77 T 13-10-2018 BMD_2024 37622c78d393f54c0ab9852b9863b492 257 PIRSF PIRSF039085 1 244 4.3E-114 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BMD_2024 37622c78d393f54c0ab9852b9863b492 257 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2828 07989e2fab4fd448b0c3ef8ef332a867 107 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 107 21.58 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 BMD_2828 07989e2fab4fd448b0c3ef8ef332a867 107 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 104 2.0E-41 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 BMD_2828 07989e2fab4fd448b0c3ef8ef332a867 107 SUPERFAMILY SSF103481 7 106 6.02E-10 T 13-10-2018 BMD_0418 0d85fa9a92592c577416e24d437d25f4 119 Pfam PF11023 Zinc-ribbon containing domain 4 114 1.4E-61 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 BMD_0418 0d85fa9a92592c577416e24d437d25f4 119 ProDom PD355753 MEMBRANE TRANSMEMBRANE UPF0295 BLI00901/BL05075 BT9727_0449 GK0479 BCE0593 YGZB PRECURSOR BA0538/GBAA0538/BAS0506 4 114 7.0E-48 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 BMD_0418 0d85fa9a92592c577416e24d437d25f4 119 Hamap MF_01502 UPF0295 protein . 2 116 36.79 T 13-10-2018 IPR020912 Uncharacterised protein family UPF0295 GO:0005887 BMD_4477 07dbdb1850639135f6c50f43145a7cf7 112 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_4477 07dbdb1850639135f6c50f43145a7cf7 112 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 29 4.5E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_4477 07dbdb1850639135f6c50f43145a7cf7 112 ProDom PD073895 COMPETENCE COMGE LATE MACHINERY MEMBRANE OPERON DNA THE METHYLATION PART 6 84 8.0E-4 T 13-10-2018 IPR020488 Competence operon G, ComGE BMD_4878 59d4accedefe6eb1b5c314f5c745f691 473 Gene3D G3DSA:3.60.120.10 3 468 1.0E-110 T 13-10-2018 IPR005801 ADC synthase GO:0009058 BMD_4878 59d4accedefe6eb1b5c314f5c745f691 473 Hamap MF_01935 Isochorismate synthase MenF [menF]. 4 467 30.576 T 13-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 BMD_4878 59d4accedefe6eb1b5c314f5c745f691 473 SUPERFAMILY SSF56322 29 466 2.09E-106 T 13-10-2018 IPR005801 ADC synthase GO:0009058 BMD_4878 59d4accedefe6eb1b5c314f5c745f691 473 Pfam PF00425 chorismate binding enzyme 205 457 9.4E-79 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BMD_4878 59d4accedefe6eb1b5c314f5c745f691 473 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 114 465 2.1E-112 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 Gene3D G3DSA:3.40.50.1240 1 231 2.5E-83 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 228 43.881 T 13-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 SUPERFAMILY SSF53254 1 231 2.08E-73 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 PIRSF PIRSF000709 3 114 2.8E-8 T 13-10-2018 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 PIRSF PIRSF000709 172 221 0.0082 T 13-10-2018 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 3 233 2.1E-104 T 13-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 144 209 4.3E-5 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 127 3.1E-28 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_0557 6db9777ddffd0d79920b8e7c9ea164a4 241 SMART SM00855 3 189 8.1E-26 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_3337 09678828a01fbd4f47b0424dcd935d65 648 PIRSF PIRSF018968 1 648 4.0E-156 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 BMD_3337 09678828a01fbd4f47b0424dcd935d65 648 Pfam PF02687 FtsX-like permease family 85 174 1.3E-7 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BMD_4972 d38c5d4bd3f1922aa455fbec47cef9f7 333 Pfam PF01551 Peptidase family M23 208 309 2.3E-18 T 13-10-2018 IPR016047 Peptidase M23 BMD_4972 d38c5d4bd3f1922aa455fbec47cef9f7 333 SUPERFAMILY SSF51261 124 319 5.75E-33 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_4972 d38c5d4bd3f1922aa455fbec47cef9f7 333 Gene3D G3DSA:2.70.70.10 121 330 5.0E-56 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_0139 4fd86464fe164a1fe0a342e2a20cb389 113 Gene3D G3DSA:3.90.470.10 1 113 1.2E-50 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0139 4fd86464fe164a1fe0a342e2a20cb389 113 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 7.0E-52 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0139 4fd86464fe164a1fe0a342e2a20cb389 113 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 30.247 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0139 4fd86464fe164a1fe0a342e2a20cb389 113 SUPERFAMILY SSF54843 1 112 4.97E-44 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 BMD_0139 4fd86464fe164a1fe0a342e2a20cb389 113 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 4.1E-37 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 BMD_0139 4fd86464fe164a1fe0a342e2a20cb389 113 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_2469 caecae1b9b0e01d85add50cdae26a173 253 SUPERFAMILY SSF88713 3 250 4.0E-100 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_2469 caecae1b9b0e01d85add50cdae26a173 253 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 46.557 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BMD_2469 caecae1b9b0e01d85add50cdae26a173 253 Gene3D G3DSA:3.20.20.370 2 253 6.5E-105 T 13-10-2018 BMD_2469 caecae1b9b0e01d85add50cdae26a173 253 Pfam PF03746 LamB/YcsF family 4 241 1.9E-104 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BMD_3513 6c8b6e8b8dbcfdfff12cad70db5b48fd 228 Pfam PF06912 Protein of unknown function (DUF1275) 11 215 1.6E-36 T 13-10-2018 IPR010699 Protein of unknown function DUF1275 BMD_3600 ff3d8397b231e70e44df1c462164f267 167 Pfam PF08877 MepB protein 28 150 4.4E-48 T 13-10-2018 IPR011235 MepB-like BMD_3600 ff3d8397b231e70e44df1c462164f267 167 Gene3D G3DSA:3.40.1350.140 3 162 3.6E-55 T 13-10-2018 IPR038231 MepB-like superfamily BMD_3600 ff3d8397b231e70e44df1c462164f267 167 PIRSF PIRSF032285 1 167 2.4E-63 T 13-10-2018 IPR011235 MepB-like BMD_5095 2050238d277bfdfdce40a6be7f4af0ca 184 Gene3D G3DSA:1.10.10.10 10 93 1.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5095 2050238d277bfdfdce40a6be7f4af0ca 184 PIRSF PIRSF006707 3 184 9.4E-50 T 13-10-2018 IPR026282 DNA-binding protein, MJ1563 type BMD_5095 2050238d277bfdfdce40a6be7f4af0ca 184 SUPERFAMILY SSF46785 11 158 1.47E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3701 81a1f95a6c01450e8bf57cbaac1f848b 169 Pfam PF13302 Acetyltransferase (GNAT) domain 5 138 2.2E-19 T 13-10-2018 IPR000182 GNAT domain BMD_3701 81a1f95a6c01450e8bf57cbaac1f848b 169 Gene3D G3DSA:3.40.630.30 1 169 5.9E-45 T 13-10-2018 BMD_3701 81a1f95a6c01450e8bf57cbaac1f848b 169 SUPERFAMILY SSF55729 2 163 1.73E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Pfam PF08486 Stage II sporulation protein 127 206 1.1E-20 T 13-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 776 850 2.2E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 942 1014 2.1E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 444 520 4.0E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 1024 1101 4.9E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 692 769 8.5E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 527 601 4.8E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 610 685 2.6E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 Gene3D G3DSA:2.60.40.10 858 933 1.2E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1067 86b20efbd51a382694baee0f48e51dbf 1104 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 129 422 2.0E-69 T 13-10-2018 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 BMD_3500 d058da3d4802e41c9814c81697b60455 359 SUPERFAMILY SSF48371 26 236 2.24E-44 T 13-10-2018 IPR016024 Armadillo-type fold BMD_3500 d058da3d4802e41c9814c81697b60455 359 Gene3D G3DSA:1.25.40.290 120 236 2.0E-35 T 13-10-2018 BMD_3500 d058da3d4802e41c9814c81697b60455 359 Pfam PF08713 DNA alkylation repair enzyme 121 233 1.1E-4 T 13-10-2018 IPR014825 DNA alkylation repair enzyme BMD_4975 7c438ba2fe353954332da208cca4c165 284 Gene3D G3DSA:3.20.20.410 1 281 6.0E-97 T 13-10-2018 IPR036520 UPF0759 superfamily BMD_4975 7c438ba2fe353954332da208cca4c165 284 Pfam PF01904 Protein of unknown function DUF72 16 264 7.7E-62 T 13-10-2018 IPR002763 Protein of unknown function DUF72 BMD_4975 7c438ba2fe353954332da208cca4c165 284 SUPERFAMILY SSF117396 1 268 1.83E-84 T 13-10-2018 IPR036520 UPF0759 superfamily BMD_3593 c96a56cc740fbc75102ec150133da446 39 Gene3D G3DSA:1.10.150.20 1 39 3.5E-6 T 13-10-2018 BMD_3593 c96a56cc740fbc75102ec150133da446 39 SUPERFAMILY SSF47789 1 38 3.92E-6 T 13-10-2018 BMD_4478 d4de9c624a918148c2c71f71416d92cb 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 21 1.4E-4 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_4478 d4de9c624a918148c2c71f71416d92cb 145 SUPERFAMILY SSF54523 9 95 2.28E-5 T 13-10-2018 BMD_4478 d4de9c624a918148c2c71f71416d92cb 145 PIRSF PIRSF021292 3 145 1.8E-37 T 13-10-2018 IPR016785 ComG operon protein 4 GO:0030420 BMD_4478 d4de9c624a918148c2c71f71416d92cb 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 21 2.0E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site BMD_3051 8414d788c6ccbc3a504ccaf7110db88f 364 Gene3D G3DSA:3.20.20.70 3 349 1.4E-81 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3051 8414d788c6ccbc3a504ccaf7110db88f 364 SUPERFAMILY SSF51395 5 330 3.38E-73 T 13-10-2018 BMD_3051 8414d788c6ccbc3a504ccaf7110db88f 364 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 326 4.5E-59 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BMD_3090 9998f93d4a2b2869b73dde10499feaae 87 Pfam PF04226 Transglycosylase associated protein 33 78 1.7E-10 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 BMD_4979 2db6711989afde8ad1a6eb23b5e356de 435 Pfam PF01458 Uncharacterized protein family (UPF0051) 185 409 5.5E-62 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BMD_4979 2db6711989afde8ad1a6eb23b5e356de 435 SUPERFAMILY SSF101960 13 434 2.22E-120 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BMD_4979 2db6711989afde8ad1a6eb23b5e356de 435 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 151 426 5.5E-77 T 13-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 BMD_5230 cc1bb83ac225a5aa9fadab8ce29c2f98 477 Pfam PF00939 Sodium:sulfate symporter transmembrane region 13 477 1.4E-168 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 BMD_5230 cc1bb83ac225a5aa9fadab8ce29c2f98 477 PIRSF PIRSF002457 1 477 1.3E-162 T 13-10-2018 IPR030676 Citrate carrier CitT-related BMD_5230 cc1bb83ac225a5aa9fadab8ce29c2f98 477 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 33 471 3.8E-136 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 BMD_1883 b9d77f52a579e386bc73532607f60fce 116 SUPERFAMILY SSF54593 8 116 6.98E-17 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1883 b9d77f52a579e386bc73532607f60fce 116 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 111 3.2E-8 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_1883 b9d77f52a579e386bc73532607f60fce 116 Gene3D G3DSA:3.10.180.10 2 115 6.9E-16 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3763 483a2869c8210aec3e87d9bc14b95e81 233 Pfam PF11553 Protein of unknown function (DUF3231) 2 159 3.3E-43 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_3763 483a2869c8210aec3e87d9bc14b95e81 233 Gene3D G3DSA:1.20.1260.10 2 145 5.9E-11 T 13-10-2018 IPR012347 Ferritin-like BMD_0097 6371d3b652c7ad7957a7d0d6bb0e15a3 181 SUPERFAMILY SSF55083 4 148 4.19E-53 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BMD_0097 6371d3b652c7ad7957a7d0d6bb0e15a3 181 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 134 1.4E-45 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BMD_0097 6371d3b652c7ad7957a7d0d6bb0e15a3 181 Gene3D G3DSA:3.30.70.560 1 159 5.9E-57 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BMD_0097 6371d3b652c7ad7957a7d0d6bb0e15a3 181 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 134 2.4E-38 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BMD_2335 c6a68bc9e99ff506a0f687a4cdacce5f 431 PIRSF PIRSF000521 6 130 5.0E-6 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_2335 c6a68bc9e99ff506a0f687a4cdacce5f 431 PIRSF PIRSF000521 124 427 7.1E-43 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_2335 c6a68bc9e99ff506a0f687a4cdacce5f 431 Gene3D G3DSA:3.40.640.10 62 326 4.2E-152 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_2335 c6a68bc9e99ff506a0f687a4cdacce5f 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_2335 c6a68bc9e99ff506a0f687a4cdacce5f 431 SUPERFAMILY SSF53383 24 426 5.55E-131 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_2335 c6a68bc9e99ff506a0f687a4cdacce5f 431 Gene3D G3DSA:3.90.1150.10 8 422 4.2E-152 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_2335 c6a68bc9e99ff506a0f687a4cdacce5f 431 Pfam PF00202 Aminotransferase class-III 26 424 9.0E-124 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_0655 7a7527c9d6202187162cc66dde0082fd 186 ProDom PD106196 YISN IG BH1722 6 178 3.0E-36 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 BMD_0655 7a7527c9d6202187162cc66dde0082fd 186 Pfam PF10949 Protein of unknown function (DUF2777) 5 181 1.1E-74 T 13-10-2018 IPR024488 Protein of unknown function DUF2777 BMD_2652 e88bd34d732c17c987c6f807e9293ba2 304 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 53 278 3.4E-35 T 13-10-2018 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 BMD_2652 e88bd34d732c17c987c6f807e9293ba2 304 SUPERFAMILY SSF56112 26 282 4.26E-28 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_2652 e88bd34d732c17c987c6f807e9293ba2 304 Gene3D G3DSA:3.90.1200.10 127 241 6.2E-6 T 13-10-2018 BMD_3395 6f8533e7a990dbf499dd89427f3cbf43 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 2.6E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3395 6f8533e7a990dbf499dd89427f3cbf43 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 2.6E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3395 6f8533e7a990dbf499dd89427f3cbf43 298 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 2.6E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3395 6f8533e7a990dbf499dd89427f3cbf43 298 SUPERFAMILY SSF53474 14 290 9.86E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3395 6f8533e7a990dbf499dd89427f3cbf43 298 Pfam PF00561 alpha/beta hydrolase fold 30 283 9.8E-21 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3395 6f8533e7a990dbf499dd89427f3cbf43 298 Gene3D G3DSA:3.40.50.1820 13 290 4.3E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 Pfam PF00342 Phosphoglucose isomerase 76 426 7.5E-26 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 408 425 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 1 435 26.503 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 Gene3D G3DSA:3.40.50.10490 227 417 5.9E-153 T 13-10-2018 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 SUPERFAMILY SSF53697 5 447 6.81E-147 T 13-10-2018 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 202 215 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 Gene3D G3DSA:3.40.50.10490 58 226 5.9E-153 T 13-10-2018 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 394 408 3.7E-28 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 198 216 3.7E-28 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 408 421 3.7E-28 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 376 394 3.7E-28 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 76 95 3.7E-28 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 PRINTS PR00662 Glucose-6-phosphate isomerase signature 273 294 3.7E-28 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_4923 bc7c53f3d78e48817b465a1c200267ec 449 Gene3D G3DSA:3.40.50.10490 1 57 1.6E-19 T 13-10-2018 BMD_3516 5a46cffbdf83e04a0774340791741fad 291 Pfam PF08282 haloacid dehalogenase-like hydrolase 4 280 2.2E-62 T 13-10-2018 BMD_3516 5a46cffbdf83e04a0774340791741fad 291 Gene3D G3DSA:3.40.50.1000 2 277 3.1E-90 T 13-10-2018 IPR023214 HAD superfamily BMD_3516 5a46cffbdf83e04a0774340791741fad 291 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 3 253 8.0E-28 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_3516 5a46cffbdf83e04a0774340791741fad 291 Gene3D G3DSA:3.30.1240.10 82 209 3.1E-90 T 13-10-2018 BMD_3516 5a46cffbdf83e04a0774340791741fad 291 SUPERFAMILY SSF56784 2 284 2.1E-66 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3516 5a46cffbdf83e04a0774340791741fad 291 ProSitePatterns PS01229 Hypothetical cof family signature 2. 234 256 - T 13-10-2018 BMD_3516 5a46cffbdf83e04a0774340791741fad 291 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 3 280 1.1E-58 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_3594 ed0f986aa71b82855c2912db4dde2174 235 SUPERFAMILY SSF48371 1 235 8.06E-68 T 13-10-2018 IPR016024 Armadillo-type fold BMD_3594 ed0f986aa71b82855c2912db4dde2174 235 Pfam PF08713 DNA alkylation repair enzyme 6 194 4.5E-22 T 13-10-2018 IPR014825 DNA alkylation repair enzyme BMD_2643 71d97666f4e074d53826e27d47417f5c 312 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2643 71d97666f4e074d53826e27d47417f5c 312 Pfam PF00005 ABC transporter 19 162 2.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2643 71d97666f4e074d53826e27d47417f5c 312 SUPERFAMILY SSF52540 3 222 3.59E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2643 71d97666f4e074d53826e27d47417f5c 312 SMART SM00382 28 219 2.1E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2643 71d97666f4e074d53826e27d47417f5c 312 Gene3D G3DSA:3.40.50.300 1 239 3.0E-66 T 13-10-2018 BMD_3259 ff94b7990c66284ac383bbe9e8c64cf2 460 Pfam PF03929 PepSY-associated TM region 28 399 4.7E-67 T 13-10-2018 IPR005625 PepSY-associated TM protein BMD_3259 ff94b7990c66284ac383bbe9e8c64cf2 460 Pfam PF03413 Peptidase propeptide and YPEB domain 287 346 9.8E-6 T 13-10-2018 IPR025711 PepSY domain BMD_2827 b4e0f1a1764ebf6fdecab216425f78aa 328 Pfam PF00753 Metallo-beta-lactamase superfamily 19 234 7.9E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2827 b4e0f1a1764ebf6fdecab216425f78aa 328 SMART SM00849 20 234 1.9E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2827 b4e0f1a1764ebf6fdecab216425f78aa 328 SUPERFAMILY SSF56281 12 320 2.36E-47 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2827 b4e0f1a1764ebf6fdecab216425f78aa 328 Gene3D G3DSA:3.60.15.10 2 261 7.2E-52 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 Pfam PF05191 Adenylate kinase, active site lid 127 162 5.6E-19 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 SUPERFAMILY SSF52540 1 212 3.84E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 1.7E-81 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 PRINTS PR00094 Adenylate kinase signature 160 175 9.5E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 PRINTS PR00094 Adenylate kinase signature 177 191 9.5E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 PRINTS PR00094 Adenylate kinase signature 4 17 9.5E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 PRINTS PR00094 Adenylate kinase signature 32 46 9.5E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 PRINTS PR00094 Adenylate kinase signature 81 97 9.5E-34 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 Gene3D G3DSA:3.40.50.300 1 216 1.1E-84 T 13-10-2018 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 Hamap MF_00235 Adenylate kinase [adk]. 1 213 53.379 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BMD_0155 c68bdef636dbb9ac85f14160e05dee61 217 Pfam PF00406 Adenylate kinase 5 190 7.7E-62 T 13-10-2018 BMD_5132 419db55e9cf3fdbd2c79746ba3943ada 78 Pfam PF06612 Protein of unknown function (DUF1146) 17 64 1.4E-19 T 13-10-2018 IPR009526 Protein of unknown function DUF1146 BMD_5132 419db55e9cf3fdbd2c79746ba3943ada 78 TIGRFAM TIGR02327 int_mem_ywzB: conserved hypothetical integral membrane protein 11 73 1.5E-22 T 13-10-2018 IPR009526 Protein of unknown function DUF1146 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 294 321 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 87 98 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 150 165 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 196 218 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 277 288 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 133 149 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 343 352 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 352 363 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00359 B-class P450 signature 322 337 4.8E-56 T 13-10-2018 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 345 354 - T 13-10-2018 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00385 P450 superfamily signature 242 259 5.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00385 P450 superfamily signature 352 363 5.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00385 P450 superfamily signature 277 288 5.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 PRINTS PR00385 P450 superfamily signature 343 352 5.8E-6 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 Gene3D G3DSA:1.10.630.10 2 404 1.2E-130 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 SUPERFAMILY SSF48264 21 401 3.93E-102 T 13-10-2018 IPR036396 Cytochrome P450 superfamily GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_3874 51e0bc0d8497a7b21c0c8a18229d88b7 404 Pfam PF00067 Cytochrome P450 19 373 6.3E-47 T 13-10-2018 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 TIGRFAM TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 6 236 3.3E-118 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 165 198 6.1E-8 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 Pfam PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal 4 87 1.2E-35 T 13-10-2018 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 Hamap MF_01691 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [dapH]. 1 235 45.566 T 13-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 156 2.4E-10 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 91 118 2.7E-4 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 174 202 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 SUPERFAMILY SSF51161 88 225 2.08E-48 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 Gene3D G3DSA:3.30.70.250 1 84 1.4E-34 T 13-10-2018 BMD_1310 b3f0c49eaa6234ee4e1defc99a44460c 239 Gene3D G3DSA:2.160.10.10 85 236 2.7E-50 T 13-10-2018 BMD_4625 e3f91a443b8fc5a878a9ac91eb7d167f 87 PRINTS PR01853 Bacterial YajC preprotein translocase signature 24 42 2.5E-14 T 13-10-2018 IPR003849 Preprotein translocase YajC BMD_4625 e3f91a443b8fc5a878a9ac91eb7d167f 87 PRINTS PR01853 Bacterial YajC preprotein translocase signature 4 24 2.5E-14 T 13-10-2018 IPR003849 Preprotein translocase YajC BMD_4625 e3f91a443b8fc5a878a9ac91eb7d167f 87 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 3 83 4.5E-31 T 13-10-2018 IPR003849 Preprotein translocase YajC BMD_4625 e3f91a443b8fc5a878a9ac91eb7d167f 87 Pfam PF02699 Preprotein translocase subunit 6 81 4.5E-31 T 13-10-2018 IPR003849 Preprotein translocase YajC BMD_4625 e3f91a443b8fc5a878a9ac91eb7d167f 87 SMART SM01323 2 84 2.1E-41 T 13-10-2018 IPR003849 Preprotein translocase YajC BMD_0645 19ee1ceb95a2d709c6db9dd1bfd48c3b 1130 Gene3D G3DSA:3.40.50.300 1 289 2.0E-43 T 13-10-2018 BMD_0645 19ee1ceb95a2d709c6db9dd1bfd48c3b 1130 SUPERFAMILY SSF52540 4 1113 1.05E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0645 19ee1ceb95a2d709c6db9dd1bfd48c3b 1130 Pfam PF13555 P-loop containing region of AAA domain 13 62 5.6E-7 T 13-10-2018 BMD_0645 19ee1ceb95a2d709c6db9dd1bfd48c3b 1130 Gene3D G3DSA:3.40.50.300 854 1126 6.4E-24 T 13-10-2018 BMD_0645 19ee1ceb95a2d709c6db9dd1bfd48c3b 1130 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1002 1085 3.9E-15 T 13-10-2018 BMD_3941 94b2fde36c22ca5e8d309319597ff1bc 249 Pfam PF01925 Sulfite exporter TauE/SafE 6 243 2.4E-39 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BMD_4037 2d73c93bfac491421b4bbd046160c3ec 190 Pfam PF09911 Uncharacterized protein conserved in bacteria (DUF2140) 3 185 2.7E-64 T 13-10-2018 IPR018672 Protein of unknown function DUF2140 BMD_2955 c5084d3755ccb83b0225a9db2b57ccba 401 SMART SM01324 320 401 1.0E-20 T 13-10-2018 IPR025582 YARHG domain BMD_2955 c5084d3755ccb83b0225a9db2b57ccba 401 Gene3D G3DSA:1.20.58.1690 316 400 6.1E-27 T 13-10-2018 IPR038434 YARHG domain superfamily BMD_2955 c5084d3755ccb83b0225a9db2b57ccba 401 Pfam PF13308 YARHG domain 321 401 3.4E-26 T 13-10-2018 IPR025582 YARHG domain BMD_0337 52de54dedb48b14f4e79f2672d57cb2e 388 Gene3D G3DSA:3.40.630.10 18 360 1.8E-138 T 13-10-2018 BMD_0337 52de54dedb48b14f4e79f2672d57cb2e 388 PIRSF PIRSF037226 1 388 3.4E-173 T 13-10-2018 IPR017144 Peptidase M20A, amidohydrolase, predicted BMD_0337 52de54dedb48b14f4e79f2672d57cb2e 388 Pfam PF07687 Peptidase dimerisation domain 170 259 9.8E-11 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_0337 52de54dedb48b14f4e79f2672d57cb2e 388 SUPERFAMILY SSF53187 3 374 1.46E-60 T 13-10-2018 BMD_0337 52de54dedb48b14f4e79f2672d57cb2e 388 Gene3D G3DSA:3.30.70.360 164 281 1.8E-138 T 13-10-2018 BMD_0337 52de54dedb48b14f4e79f2672d57cb2e 388 SUPERFAMILY SSF55031 166 271 2.62E-24 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_0337 52de54dedb48b14f4e79f2672d57cb2e 388 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 333 1.9E-61 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 PIRSF PIRSF006614 1 132 3.1E-63 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 1 120 1.6E-60 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 Pfam PF02142 MGS-like domain 14 107 3.3E-19 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 1 120 34.391 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 SUPERFAMILY SSF52335 1 130 4.32E-54 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 SMART SM00851 14 107 1.0E-23 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 ProSitePatterns PS01335 Methylglyoxal synthase active site. 54 61 - T 13-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BMD_1366 cfab76fbc331c8635a519a3ff6279da1 132 Gene3D G3DSA:3.40.50.1380 1 131 2.3E-57 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BMD_2713 c0c01628434bcc9070cc7f2fbbc0a241 221 SUPERFAMILY SSF51182 27 178 1.22E-31 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_2713 c0c01628434bcc9070cc7f2fbbc0a241 221 SMART SM00835 17 159 5.5E-22 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 BMD_2713 c0c01628434bcc9070cc7f2fbbc0a241 221 Gene3D G3DSA:2.60.120.10 30 200 1.5E-27 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_2713 c0c01628434bcc9070cc7f2fbbc0a241 221 Pfam PF00190 Cupin 40 157 5.3E-15 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:3.90.1800.10 1057 1110 1.1E-10 T 13-10-2018 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:2.40.50.100 672 751 3.4E-28 T 13-10-2018 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Pfam PF04563 RNA polymerase beta subunit 28 454 4.2E-29 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:2.40.50.150 791 930 8.2E-61 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:3.90.1100.10 389 582 5.7E-75 T 13-10-2018 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:2.40.270.10 981 1047 1.7E-24 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 204 896 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Pfam PF04561 RNA polymerase Rpb2, domain 2 140 289 2.1E-28 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Pfam PF04561 RNA polymerase Rpb2, domain 2 371 410 1.4E-6 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 SUPERFAMILY SSF64484 14 1155 0.0 T 13-10-2018 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Pfam PF04560 RNA polymerase Rpb2, domain 7 1071 1145 1.7E-27 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:2.40.270.10 752 790 4.3E-6 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:3.90.1100.10 20 153 1.3E-52 T 13-10-2018 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Pfam PF00562 RNA polymerase Rpb2, domain 6 676 1069 7.1E-164 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:3.90.1100.10 606 671 5.0E-19 T 13-10-2018 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Gene3D G3DSA:3.90.1110.10 154 272 5.5E-9 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 ProSitePatterns PS01166 RNA polymerases beta chain signature. 922 934 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Pfam PF10385 RNA polymerase beta subunit external 1 domain 547 614 8.4E-24 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Pfam PF04565 RNA polymerase Rpb2, domain 3 469 537 2.6E-30 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_0126 23b5b7db3fdee75d1819f880c0fcda10 1187 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 15 1147 12.611 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BMD_2749 4c9cd115d603292720b80465df8633ce 366 Gene3D G3DSA:1.10.10.2840 238 366 3.2E-22 T 13-10-2018 BMD_2749 4c9cd115d603292720b80465df8633ce 366 Pfam PF05651 Putative sugar diacid recognition 6 138 6.2E-51 T 13-10-2018 IPR008599 Putative sugar diacid recognition BMD_2749 4c9cd115d603292720b80465df8633ce 366 Pfam PF13556 PucR C-terminal helix-turn-helix domain 304 361 2.8E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain BMD_0819 afa660e3945940c895ab6594d7a65fa3 376 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 257 1.0E-10 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BMD_0819 afa660e3945940c895ab6594d7a65fa3 376 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 376 7.2E-34 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BMD_0819 afa660e3945940c895ab6594d7a65fa3 376 Gene3D G3DSA:2.40.30.170 48 303 2.5E-38 T 13-10-2018 BMD_0819 afa660e3945940c895ab6594d7a65fa3 376 Gene3D G3DSA:2.40.420.20 45 360 2.5E-38 T 13-10-2018 BMD_0819 afa660e3945940c895ab6594d7a65fa3 376 Gene3D G3DSA:1.10.287.470 94 181 2.5E-38 T 13-10-2018 BMD_0819 afa660e3945940c895ab6594d7a65fa3 376 SUPERFAMILY SSF111369 69 170 1.96E-5 T 13-10-2018 BMD_0819 afa660e3945940c895ab6594d7a65fa3 376 Gene3D G3DSA:2.40.50.100 59 216 2.5E-38 T 13-10-2018 BMD_3966 436e1673ea7f4f64ba93d55e65afa3a0 206 PIRSF PIRSF006324 1 205 1.7E-52 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_3966 436e1673ea7f4f64ba93d55e65afa3a0 206 Pfam PF01810 LysE type translocator 15 203 2.3E-36 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_5025 e554676122ad77591cf6beaf8059155f 114 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 6 111 3.1E-32 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_1015 3d34f064e250f4166b9da5fb6ff301c7 516 SUPERFAMILY SSF51445 63 332 1.79E-25 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_1015 3d34f064e250f4166b9da5fb6ff301c7 516 Gene3D G3DSA:2.60.40.10 417 516 6.5E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1015 3d34f064e250f4166b9da5fb6ff301c7 516 Pfam PF02638 Glycosyl hydrolase-like 10 35 354 4.3E-110 T 13-10-2018 IPR003790 Glycosyl hydrolase-like 10 BMD_1015 3d34f064e250f4166b9da5fb6ff301c7 516 Gene3D G3DSA:3.20.20.70 55 235 6.8E-9 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0788 fd9e9c574a0e987895a5e10a51656080 140 Pfam PF00293 NUDIX domain 4 117 3.0E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_0788 fd9e9c574a0e987895a5e10a51656080 140 SUPERFAMILY SSF55811 4 127 1.76E-29 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_0788 fd9e9c574a0e987895a5e10a51656080 140 Gene3D G3DSA:3.90.79.10 2 130 1.3E-28 T 13-10-2018 BMD_0788 fd9e9c574a0e987895a5e10a51656080 140 PRINTS PR00502 NUDIX hydrolase family signature 28 42 2.4E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_0788 fd9e9c574a0e987895a5e10a51656080 140 PRINTS PR00502 NUDIX hydrolase family signature 42 57 2.4E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_1484 893f9066ad48493e260a0cc10eb1844c 407 Gene3D G3DSA:1.20.1250.20 3 211 1.8E-22 T 13-10-2018 BMD_1484 893f9066ad48493e260a0cc10eb1844c 407 Gene3D G3DSA:1.20.1250.20 213 395 2.1E-17 T 13-10-2018 BMD_1484 893f9066ad48493e260a0cc10eb1844c 407 Pfam PF07690 Major Facilitator Superfamily 13 245 7.3E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1484 893f9066ad48493e260a0cc10eb1844c 407 Pfam PF07690 Major Facilitator Superfamily 252 392 1.6E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1484 893f9066ad48493e260a0cc10eb1844c 407 SUPERFAMILY SSF103473 10 393 2.35E-50 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1484 893f9066ad48493e260a0cc10eb1844c 407 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 79 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_3622 0db73d6a901d18eebd4e2bb593df1bfa 393 Gene3D G3DSA:3.40.50.720 1 133 2.7E-37 T 13-10-2018 BMD_3622 0db73d6a901d18eebd4e2bb593df1bfa 393 SUPERFAMILY SSF55347 137 321 3.43E-41 T 13-10-2018 BMD_3622 0db73d6a901d18eebd4e2bb593df1bfa 393 Gene3D G3DSA:3.30.360.10 134 386 8.8E-71 T 13-10-2018 BMD_3622 0db73d6a901d18eebd4e2bb593df1bfa 393 SUPERFAMILY SSF51735 2 164 6.06E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3622 0db73d6a901d18eebd4e2bb593df1bfa 393 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 143 220 1.6E-12 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BMD_3622 0db73d6a901d18eebd4e2bb593df1bfa 393 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 130 3.4E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_0227 13c95ca0a05db3b65cc6253421d0a4f7 110 Pfam PF01740 STAS domain 5 103 2.7E-17 T 13-10-2018 IPR002645 STAS domain BMD_0227 13c95ca0a05db3b65cc6253421d0a4f7 110 SUPERFAMILY SSF52091 3 107 1.96E-26 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0227 13c95ca0a05db3b65cc6253421d0a4f7 110 Gene3D G3DSA:3.30.750.24 1 110 3.2E-29 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0227 13c95ca0a05db3b65cc6253421d0a4f7 110 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 1 106 5.3E-33 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 BMD_2966 e0ddf0df122bb6d4db23c4f6f4c053c5 523 Pfam PF13520 Amino acid permease 14 422 1.9E-45 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2966 e0ddf0df122bb6d4db23c4f6f4c053c5 523 PIRSF PIRSF006060 450 516 300.0 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2966 e0ddf0df122bb6d4db23c4f6f4c053c5 523 PIRSF PIRSF006060 1 459 8.8E-87 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2966 e0ddf0df122bb6d4db23c4f6f4c053c5 523 Gene3D G3DSA:1.20.1740.10 9 464 1.7E-74 T 13-10-2018 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 Pfam PF01817 Chorismate mutase type II 10 87 3.7E-17 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 Gene3D G3DSA:1.20.59.10 8 92 5.0E-28 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 TIGRFAM TIGR01361 DAHP_synth_Bsub: 3-deoxy-7-phosphoheptulonate synthase 95 351 1.4E-123 T 13-10-2018 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 GO:0009073|GO:0016832 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 Gene3D G3DSA:3.20.20.70 93 355 8.5E-101 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 TIGRFAM TIGR01801 CM_A: chorismate mutase 1 102 2.8E-41 T 13-10-2018 IPR010954 Chorismate mutase, Firmicutes/Deinococcus KEGG: 00400+2.5.1.54+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6164|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 SMART SM00830 10 89 2.1E-20 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 Pfam PF00793 DAHP synthetase I family 110 350 3.6E-84 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BMD_4805 fee307648a68470bb968bc37926fd4bf 358 SUPERFAMILY SSF51569 32 353 8.61E-102 T 13-10-2018 BMD_1537 fd743b43105565c93299242a2693d013 521 SMART SM00640 53 481 7.4E-119 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 BMD_1537 fd743b43105565c93299242a2693d013 521 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 366 515 2.0E-25 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal BMD_1537 fd743b43105565c93299242a2693d013 521 SUPERFAMILY SSF75005 45 363 7.59E-86 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1537 fd743b43105565c93299242a2693d013 521 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 53 362 2.7E-81 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BMD_1537 fd743b43105565c93299242a2693d013 521 Gene3D G3DSA:2.60.120.560 367 520 2.2E-37 T 13-10-2018 BMD_1537 fd743b43105565c93299242a2693d013 521 SUPERFAMILY SSF49899 362 519 1.82E-28 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BMD_1537 fd743b43105565c93299242a2693d013 521 Gene3D G3DSA:2.115.10.20 50 364 6.8E-101 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_2917 34460cefd0904015e22c8aa9e84614a0 253 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 103 231 2.8E-43 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 BMD_2917 34460cefd0904015e22c8aa9e84614a0 253 SUPERFAMILY SSF55166 89 238 2.62E-39 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_2917 34460cefd0904015e22c8aa9e84614a0 253 Gene3D G3DSA:3.30.1380.10 41 253 4.7E-76 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_4844 98253963bc579e4ebfdd8533a1a0373a 175 SUPERFAMILY SSF51161 2 169 2.36E-49 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_4844 98253963bc579e4ebfdd8533a1a0373a 175 Gene3D G3DSA:2.160.10.10 1 175 7.0E-75 T 13-10-2018 BMD_4844 98253963bc579e4ebfdd8533a1a0373a 175 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 44 2.7E-6 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_4844 98253963bc579e4ebfdd8533a1a0373a 175 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 120 3.0E-6 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 TIGRFAM TIGR01228 hutU: urocanate hydratase 8 549 2.6E-299 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 Pfam PF17392 Urocanase C-terminal domain 348 542 1.0E-96 T 13-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 PIRSF PIRSF001423 1 553 8.1E-293 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 Pfam PF01175 Urocanase Rossmann-like domain 137 345 4.6E-87 T 13-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 Gene3D G3DSA:3.40.1770.10 16 538 2.4E-253 T 13-10-2018 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 Hamap MF_00577 Urocanate hydratase [hutU]. 1 552 49.943 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 ProSitePatterns PS01233 Urocanase signature. 438 453 - T 13-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 SUPERFAMILY SSF111326 6 551 1.57E-256 T 13-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 Gene3D G3DSA:3.40.50.10730 138 345 2.4E-253 T 13-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1597 cbb795efd189c9f5f92e8e899c7849c4 553 Pfam PF17391 Urocanase N-terminal domain 8 134 7.6E-61 T 13-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_0186 fb4a85de322ee80097556450a40e6d18 53 Pfam PF09388 Spo0E like sporulation regulatory protein 8 49 3.0E-13 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 BMD_0186 fb4a85de322ee80097556450a40e6d18 53 Gene3D G3DSA:1.20.58.990 4 52 8.5E-8 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_0186 fb4a85de322ee80097556450a40e6d18 53 SUPERFAMILY SSF140500 5 50 8.5E-12 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_1566 43b4d101034685874d133737b75c5baa 488 SUPERFAMILY SSF75005 21 334 1.16E-122 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1566 43b4d101034685874d133737b75c5baa 488 SMART SM00640 30 447 1.8E-160 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 BMD_1566 43b4d101034685874d133737b75c5baa 488 Gene3D G3DSA:2.60.120.560 349 484 6.2E-34 T 13-10-2018 BMD_1566 43b4d101034685874d133737b75c5baa 488 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 336 482 4.9E-30 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal BMD_1566 43b4d101034685874d133737b75c5baa 488 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 30 333 2.3E-111 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BMD_1566 43b4d101034685874d133737b75c5baa 488 SUPERFAMILY SSF49899 333 487 1.5E-34 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BMD_1566 43b4d101034685874d133737b75c5baa 488 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 18 458 7.9E-156 T 13-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BMD_1566 43b4d101034685874d133737b75c5baa 488 Gene3D G3DSA:2.115.10.20 2 348 1.1E-134 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_3331 87a92e2d4667f8596720321d31ad134c 357 Gene3D G3DSA:3.20.20.30 1 352 1.1E-109 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_3331 87a92e2d4667f8596720321d31ad134c 357 Pfam PF00296 Luciferase-like monooxygenase 4 319 5.8E-76 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_3331 87a92e2d4667f8596720321d31ad134c 357 SUPERFAMILY SSF51679 2 346 1.96E-90 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_3331 87a92e2d4667f8596720321d31ad134c 357 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 3 347 4.1E-174 T 13-10-2018 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG KEGG: 00920+1.14.14.35|MetaCyc: PWY-6059 BMD_1485 0e0aa3d18d1e990925297c63baf84cca 123 Pfam PF04134 Protein of unknown function, DUF393 5 116 1.3E-20 T 13-10-2018 IPR007263 Protein of unknown function DUF393 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 455 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 397 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 411 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 436 1.7E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 SMART SM00387 346 458 2.9E-39 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 SUPERFAMILY SSF47384 220 301 4.51E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 Gene3D G3DSA:1.10.8.500 181 230 2.4E-8 T 13-10-2018 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 Gene3D G3DSA:1.10.287.130 231 302 3.2E-19 T 13-10-2018 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 SMART SM00388 235 301 1.5E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 236 300 8.0E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 Gene3D G3DSA:3.30.565.10 305 457 4.8E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 SUPERFAMILY SSF158472 183 232 3.79E-9 T 13-10-2018 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 SMART SM00304 182 234 4.3E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 Pfam PF00672 HAMP domain 184 231 3.7E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 456 1.2E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1892 4683e08b98c63649b239ab7fc9dcddb7 458 SUPERFAMILY SSF55874 291 454 4.58E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2596 d9aeacdd84889c61a231741b198e1e0f 256 SUPERFAMILY SSF53790 3 250 9.03E-84 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BMD_2596 d9aeacdd84889c61a231741b198e1e0f 256 Gene3D G3DSA:3.40.1010.10 3 119 1.2E-42 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BMD_2596 d9aeacdd84889c61a231741b198e1e0f 256 Gene3D G3DSA:3.30.950.10 120 256 3.3E-53 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BMD_2596 d9aeacdd84889c61a231741b198e1e0f 256 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 241 2.9E-97 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_2596 d9aeacdd84889c61a231741b198e1e0f 256 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BMD_2596 d9aeacdd84889c61a231741b198e1e0f 256 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 217 2.0E-48 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BMD_1367 1e53f19718f2e652255b7d7248c90439 236 Gene3D G3DSA:3.40.50.10320 3 236 1.1E-85 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 BMD_1367 1e53f19718f2e652255b7d7248c90439 236 SUPERFAMILY SSF102588 6 229 2.49E-55 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 BMD_1367 1e53f19718f2e652255b7d7248c90439 236 Pfam PF02585 GlcNAc-PI de-N-acetylase 8 124 1.1E-23 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 BMD_1367 1e53f19718f2e652255b7d7248c90439 236 TIGRFAM TIGR04001 thiol_BshB1: bacillithiol biosynthesis deacetylase BshB1 4 227 8.3E-98 T 13-10-2018 IPR023842 Bacillithiol biosynthesis deacetylase, BshB1 GO:0019213|GO:0071793 BMD_5223 573918a292ab483c71331c3824c1faa0 414 SUPERFAMILY SSF53720 3 414 1.7E-124 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_5223 573918a292ab483c71331c3824c1faa0 414 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 321 342 - T 13-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_5223 573918a292ab483c71331c3824c1faa0 414 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 11 404 1.5E-157 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_5223 573918a292ab483c71331c3824c1faa0 414 Gene3D G3DSA:3.40.309.10 224 372 8.7E-172 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_5223 573918a292ab483c71331c3824c1faa0 414 Gene3D G3DSA:3.40.605.10 18 409 8.7E-172 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_5223 573918a292ab483c71331c3824c1faa0 414 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 3 414 43.406 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BMD_5223 573918a292ab483c71331c3824c1faa0 414 Pfam PF00171 Aldehyde dehydrogenase family 9 285 3.1E-16 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_5223 573918a292ab483c71331c3824c1faa0 414 Pfam PF00171 Aldehyde dehydrogenase family 300 404 4.1E-6 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_5223 573918a292ab483c71331c3824c1faa0 414 PIRSF PIRSF000151 1 414 2.9E-187 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BMD_1438 2d05cb5a51337f143e06f7bf90fdf43f 361 Gene3D G3DSA:3.40.47.10 220 361 1.9E-41 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_1438 2d05cb5a51337f143e06f7bf90fdf43f 361 Pfam PF02797 Chalcone and stilbene synthases, C-terminal domain 224 358 2.4E-20 T 13-10-2018 IPR012328 Chalcone/stilbene synthase, C-terminal BMD_1438 2d05cb5a51337f143e06f7bf90fdf43f 361 PIRSF PIRSF000451 1 361 1.3E-120 T 13-10-2018 IPR011141 Polyketide synthase, type III GO:0009058|GO:0016747 BMD_1438 2d05cb5a51337f143e06f7bf90fdf43f 361 SUPERFAMILY SSF53901 219 360 1.6E-37 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_1438 2d05cb5a51337f143e06f7bf90fdf43f 361 SUPERFAMILY SSF53901 3 209 3.82E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_1438 2d05cb5a51337f143e06f7bf90fdf43f 361 Gene3D G3DSA:3.40.47.10 1 212 3.7E-59 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_1438 2d05cb5a51337f143e06f7bf90fdf43f 361 Pfam PF00195 Chalcone and stilbene synthases, N-terminal domain 64 206 3.4E-17 T 13-10-2018 IPR001099 Chalcone/stilbene synthase, N-terminal BMD_2974 7be4901614ec50bb15f7f515c00d03dc 426 Pfam PF07690 Major Facilitator Superfamily 17 257 6.8E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2974 7be4901614ec50bb15f7f515c00d03dc 426 Pfam PF07690 Major Facilitator Superfamily 262 417 2.1E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2974 7be4901614ec50bb15f7f515c00d03dc 426 Gene3D G3DSA:1.20.1250.20 1 204 2.4E-40 T 13-10-2018 BMD_2974 7be4901614ec50bb15f7f515c00d03dc 426 Gene3D G3DSA:1.20.1250.20 222 419 1.4E-33 T 13-10-2018 BMD_2974 7be4901614ec50bb15f7f515c00d03dc 426 SUPERFAMILY SSF103473 4 415 2.09E-80 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2974 7be4901614ec50bb15f7f515c00d03dc 426 PIRSF PIRSF002808 1 423 4.2E-34 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BMD_3984 25dbed04aeeaa1da45d5dba540b343c7 367 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 13 363 8.4E-78 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_3984 25dbed04aeeaa1da45d5dba540b343c7 367 Pfam PF03845 Spore germination protein 12 333 1.3E-80 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_3984 25dbed04aeeaa1da45d5dba540b343c7 367 Gene3D G3DSA:1.20.1740.10 7 367 8.3E-8 T 13-10-2018 BMD_4016 031eab68a8453d9a4a3f4be92ac85be1 278 Gene3D G3DSA:1.10.510.10 20 269 7.5E-45 T 13-10-2018 BMD_4016 031eab68a8453d9a4a3f4be92ac85be1 278 SUPERFAMILY SSF56112 25 250 3.2E-49 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_4016 031eab68a8453d9a4a3f4be92ac85be1 278 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 35 58 - T 13-10-2018 IPR017441 Protein kinase, ATP binding site GO:0005524 BMD_4016 031eab68a8453d9a4a3f4be92ac85be1 278 SMART SM00219 29 254 5.7E-6 T 13-10-2018 IPR020635 Tyrosine-protein kinase, catalytic domain GO:0004713|GO:0006468 BMD_4016 031eab68a8453d9a4a3f4be92ac85be1 278 Pfam PF00069 Protein kinase domain 29 265 6.1E-35 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BMD_3325 fe0a652b7ee04a5c4c9ad8e7d74d102b 311 Gene3D G3DSA:3.60.130.10 34 311 3.7E-87 T 13-10-2018 BMD_3325 fe0a652b7ee04a5c4c9ad8e7d74d102b 311 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 43 298 2.2E-62 T 13-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 BMD_3325 fe0a652b7ee04a5c4c9ad8e7d74d102b 311 SUPERFAMILY SSF51197 41 311 5.04E-89 T 13-10-2018 BMD_1239 e3432563acb2b3982192c171694f49fa 501 SUPERFAMILY SSF52540 5 225 3.52E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1239 e3432563acb2b3982192c171694f49fa 501 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1239 e3432563acb2b3982192c171694f49fa 501 SMART SM00382 29 220 5.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1239 e3432563acb2b3982192c171694f49fa 501 SMART SM00382 281 476 7.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1239 e3432563acb2b3982192c171694f49fa 501 Gene3D G3DSA:3.40.50.300 1 241 1.9E-56 T 13-10-2018 BMD_1239 e3432563acb2b3982192c171694f49fa 501 Gene3D G3DSA:3.40.50.300 265 497 1.6E-47 T 13-10-2018 BMD_1239 e3432563acb2b3982192c171694f49fa 501 Pfam PF00005 ABC transporter 272 427 1.6E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1239 e3432563acb2b3982192c171694f49fa 501 SUPERFAMILY SSF52540 272 488 7.98E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1239 e3432563acb2b3982192c171694f49fa 501 Pfam PF00005 ABC transporter 20 173 4.8E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 Gene3D G3DSA:2.40.440.10 2 85 6.9E-24 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 SUPERFAMILY SSF141523 18 84 4.45E-19 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 Gene3D G3DSA:1.10.101.10 208 281 2.5E-26 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 Gene3D G3DSA:1.10.101.10 109 190 4.4E-28 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 Pfam PF01471 Putative peptidoglycan binding domain 123 178 9.2E-20 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 Pfam PF01471 Putative peptidoglycan binding domain 223 278 2.7E-19 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 Pfam PF03734 L,D-transpeptidase catalytic domain 4 83 3.0E-12 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 SUPERFAMILY SSF47090 211 278 4.45E-21 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_1035 ceef9e1e4641793a7aa19acf387ad2e4 281 SUPERFAMILY SSF47090 111 179 1.94E-22 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_4049 cb90375bae20e78df743ef9e43241e1e 385 Pfam PF07690 Major Facilitator Superfamily 7 338 7.3E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_4049 cb90375bae20e78df743ef9e43241e1e 385 SUPERFAMILY SSF103473 6 372 8.5E-27 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4049 cb90375bae20e78df743ef9e43241e1e 385 Gene3D G3DSA:1.20.1250.20 5 188 6.6E-9 T 13-10-2018 BMD_4049 cb90375bae20e78df743ef9e43241e1e 385 Gene3D G3DSA:1.20.1250.20 195 374 3.0E-9 T 13-10-2018 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 PIRSF PIRSF000414 1 512 6.8E-213 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 SUPERFAMILY SSF53927 208 512 2.61E-126 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 512 44.77 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4 512 2.1E-235 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 SUPERFAMILY SSF52335 3 194 3.14E-71 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 Pfam PF01808 AICARFT/IMPCHase bienzyme 135 446 1.8E-119 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 Gene3D G3DSA:3.40.140.20 386 512 1.7E-56 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 Pfam PF02142 MGS-like domain 15 130 5.9E-29 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 SMART SM00798 135 447 1.9E-198 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 SMART SM00851 15 130 1.4E-55 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 Gene3D G3DSA:3.40.140.20 204 361 1.4E-60 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BMD_0281 2bd182e05c7eb6ff815f1c156fd60474 512 Gene3D G3DSA:3.40.50.1380 1 197 2.5E-88 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BMD_3187 47d21fd6fb93121cc87123dbdc635b40 160 Pfam PF10002 Predicted membrane protein (DUF2243) 22 149 1.3E-46 T 13-10-2018 IPR018719 Protein of unknown function DUF2243, membrane BMD_2681 d812e933820ac6191b7ba54ff9b68966 344 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 133 240 3.7E-19 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BMD_2681 d812e933820ac6191b7ba54ff9b68966 344 Gene3D G3DSA:3.40.50.720 5 313 1.3E-135 T 13-10-2018 BMD_2681 d812e933820ac6191b7ba54ff9b68966 344 Gene3D G3DSA:3.30.360.10 122 336 1.3E-135 T 13-10-2018 BMD_2681 d812e933820ac6191b7ba54ff9b68966 344 SUPERFAMILY SSF51735 2 198 4.84E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2681 d812e933820ac6191b7ba54ff9b68966 344 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 3.5E-25 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_4160 2613875bcc192516547690fe8cd66d46 365 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 256 2.6E-61 T 13-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 BMD_4160 2613875bcc192516547690fe8cd66d46 365 Gene3D G3DSA:3.40.50.300 165 348 1.0E-70 T 13-10-2018 BMD_4160 2613875bcc192516547690fe8cd66d46 365 SMART SM00382 168 315 0.0028 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4160 2613875bcc192516547690fe8cd66d46 365 SUPERFAMILY SSF52540 170 359 1.11E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4160 2613875bcc192516547690fe8cd66d46 365 SMART SM00962 169 360 9.3E-51 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4160 2613875bcc192516547690fe8cd66d46 365 Gene3D G3DSA:1.20.120.1380 120 350 1.0E-70 T 13-10-2018 BMD_4160 2613875bcc192516547690fe8cd66d46 365 Pfam PF00448 SRP54-type protein, GTPase domain 171 359 1.8E-42 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 410 1.2E-155 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 Pfam PF03129 Anticodon binding domain 331 420 1.2E-18 T 13-10-2018 IPR004154 Anticodon-binding BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 Gene3D G3DSA:3.30.930.10 2 324 1.5E-113 T 13-10-2018 BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 PIRSF PIRSF001549 1 422 6.5E-119 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 Pfam PF13393 Histidyl-tRNA synthetase 8 313 4.1E-48 T 13-10-2018 BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 Gene3D G3DSA:3.40.50.800 328 421 3.7E-29 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 420 34.105 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 SUPERFAMILY SSF55681 4 318 1.53E-97 T 13-10-2018 BMD_4613 bdd2d9b92ff3f3ff355e5212bdc3b52f 422 SUPERFAMILY SSF52954 328 421 8.16E-28 T 13-10-2018 BMD_5218 1d2798e989f14d304f62878c64f56c6d 151 Pfam PF12821 Threonine/Serine exporter, ThrE 6 134 2.8E-39 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE BMD_1720 e73051e79733515d150c1b68fb5d1b84 124 Pfam PF01638 HxlR-like helix-turn-helix 29 117 1.6E-26 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_1720 e73051e79733515d150c1b68fb5d1b84 124 Gene3D G3DSA:1.10.10.10 11 123 5.5E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1720 e73051e79733515d150c1b68fb5d1b84 124 SUPERFAMILY SSF46785 18 119 1.05E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1799 e476712707c746a8dda6181938b44936 108 Pfam PF11181 Heat induced stress protein YflT 4 103 2.1E-26 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 Gene3D G3DSA:1.10.150.130 2 98 1.3E-22 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 7 297 1.3E-103 T 13-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 1 297 62.027 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 297 59.16 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 89 1.3E-21 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 SUPERFAMILY SSF47823 3 99 3.92E-20 T 13-10-2018 BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 Pfam PF00589 Phage integrase family 110 283 2.5E-57 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 Gene3D G3DSA:1.10.443.10 110 291 2.1E-69 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 SUPERFAMILY SSF56349 105 295 5.89E-63 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BMD_4383 b1a7e71960f80a4438996123f0d135fd 297 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 6 297 9.9E-124 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BMD_2798 203a7bb02ea999cb20f5d1bd82f86acb 298 Gene3D G3DSA:2.130.10.10 2 296 1.1E-116 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BMD_2798 203a7bb02ea999cb20f5d1bd82f86acb 298 SUPERFAMILY SSF101898 55 284 6.8E-31 T 13-10-2018 BMD_2798 203a7bb02ea999cb20f5d1bd82f86acb 298 PIRSF PIRSF026412 3 297 5.2E-105 T 13-10-2018 IPR011217 Streptogramin lyase GO:0000287|GO:0016835|GO:0017001|GO:0046677 BMD_2798 203a7bb02ea999cb20f5d1bd82f86acb 298 Hamap MF_01282 Virginiamycin B lyase [vgb]. 7 294 40.895 T 13-10-2018 IPR011217 Streptogramin lyase GO:0000287|GO:0016835|GO:0017001|GO:0046677 BMD_0913 3970725c9276aa0081bcd86575a876dc 253 Pfam PF00106 short chain dehydrogenase 6 189 8.2E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 4.5E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 4.5E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 4.5E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 1.3E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0913 3970725c9276aa0081bcd86575a876dc 253 Gene3D G3DSA:3.40.50.720 1 247 7.2E-51 T 13-10-2018 BMD_0913 3970725c9276aa0081bcd86575a876dc 253 SUPERFAMILY SSF51735 1 207 6.25E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0913 3970725c9276aa0081bcd86575a876dc 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 173 0.0074 T 13-10-2018 BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 Pfam PF12051 Protein of unknown function (DUF3533) 27 180 1.0E-10 T 13-10-2018 IPR022703 Domain of unknown function DUF3533 BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 173 198 1.6E-5 T 13-10-2018 IPR023908 xxxLxxG heptad repeat BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 528 554 4.0E-6 T 13-10-2018 IPR023908 xxxLxxG heptad repeat BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 270 295 1.8E-4 T 13-10-2018 IPR023908 xxxLxxG heptad repeat BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 574 775 6.2E-62 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 7 169 1.5E-65 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 SUPERFAMILY SSF57997 162 357 1.18E-6 T 13-10-2018 BMD_0899 162a5cd58bad807a6e718a01c18d70df 791 Pfam PF12698 ABC-2 family transporter protein 408 771 5.7E-14 T 13-10-2018 BMD_2876 34251d973b61068c3486957e7fe16d08 500 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 8 490 1.9E-220 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 BMD_2876 34251d973b61068c3486957e7fe16d08 500 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 4 492 54.137 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 BMD_2876 34251d973b61068c3486957e7fe16d08 500 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 7 492 1.5E-240 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 BMD_2876 34251d973b61068c3486957e7fe16d08 500 SUPERFAMILY SSF51905 7 274 7.25E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0605 48ca77118e84a6c25b49556a63b3bdc3 723 Gene3D G3DSA:3.90.1310.30 61 582 8.9E-214 T 13-10-2018 BMD_0605 48ca77118e84a6c25b49556a63b3bdc3 723 Pfam PF00905 Penicillin binding protein transpeptidase domain 358 681 8.8E-67 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_0605 48ca77118e84a6c25b49556a63b3bdc3 723 Gene3D G3DSA:3.40.710.10 327 667 8.9E-214 T 13-10-2018 BMD_0605 48ca77118e84a6c25b49556a63b3bdc3 723 SUPERFAMILY SSF56519 56 326 3.01E-31 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BMD_0605 48ca77118e84a6c25b49556a63b3bdc3 723 Pfam PF03717 Penicillin-binding Protein dimerisation domain 59 311 7.8E-35 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BMD_0605 48ca77118e84a6c25b49556a63b3bdc3 723 Gene3D G3DSA:1.10.10.1230 86 203 8.9E-214 T 13-10-2018 BMD_0605 48ca77118e84a6c25b49556a63b3bdc3 723 SUPERFAMILY SSF56601 279 692 1.13E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_3487 dcebd8699e26d2404f85978847fb3ef3 403 Gene3D G3DSA:1.50.10.10 8 402 1.7E-140 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BMD_3487 dcebd8699e26d2404f85978847fb3ef3 403 SUPERFAMILY SSF48208 18 401 1.36E-106 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BMD_3487 dcebd8699e26d2404f85978847fb3ef3 403 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 40 392 5.4E-105 T 13-10-2018 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 Gene3D G3DSA:3.50.50.60 119 240 1.4E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 SUPERFAMILY SSF51905 1 303 1.15E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 282 8.2E-44 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 Gene3D G3DSA:3.50.50.60 4 300 1.4E-73 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 234 255 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 287 306 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 145 169 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 130 142 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 197 213 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 60 70 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 108 116 7.4E-32 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 8.1E-30 T 13-10-2018 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 8.1E-30 T 13-10-2018 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 8.1E-30 T 13-10-2018 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 232 248 8.1E-30 T 13-10-2018 BMD_1090 38fb4ecfa2008ce563014160325c6c19 308 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 8.1E-30 T 13-10-2018 BMD_1322 7c04c5d6e95f362b0fed2111cf652a2d 260 Gene3D G3DSA:3.40.50.1000 4 249 2.0E-83 T 13-10-2018 IPR023214 HAD superfamily BMD_1322 7c04c5d6e95f362b0fed2111cf652a2d 260 ProSitePatterns PS01229 Hypothetical cof family signature 2. 207 229 - T 13-10-2018 BMD_1322 7c04c5d6e95f362b0fed2111cf652a2d 260 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 252 3.2E-63 T 13-10-2018 BMD_1322 7c04c5d6e95f362b0fed2111cf652a2d 260 SUPERFAMILY SSF56784 4 254 8.27E-68 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1322 7c04c5d6e95f362b0fed2111cf652a2d 260 Gene3D G3DSA:3.30.1240.10 81 182 2.0E-83 T 13-10-2018 BMD_1322 7c04c5d6e95f362b0fed2111cf652a2d 260 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 226 1.1E-22 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_1322 7c04c5d6e95f362b0fed2111cf652a2d 260 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 252 9.4E-64 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_0685 7bb4e9adf17ec82c96f811aecb52f998 214 Gene3D G3DSA:3.40.50.720 1 213 3.4E-60 T 13-10-2018 BMD_0685 7bb4e9adf17ec82c96f811aecb52f998 214 SUPERFAMILY SSF51735 1 200 1.31E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0685 7bb4e9adf17ec82c96f811aecb52f998 214 Pfam PF13460 NAD(P)H-binding 7 189 2.8E-48 T 13-10-2018 IPR016040 NAD(P)-binding domain BMD_2773 eff601bcb5c83a542ea8122c8e6dae98 88 Gene3D G3DSA:1.10.1200.10 1 86 2.2E-14 T 13-10-2018 IPR036736 ACP-like superfamily BMD_2773 eff601bcb5c83a542ea8122c8e6dae98 88 SUPERFAMILY SSF47336 6 84 3.14E-12 T 13-10-2018 IPR036736 ACP-like superfamily BMD_2773 eff601bcb5c83a542ea8122c8e6dae98 88 Pfam PF00550 Phosphopantetheine attachment site 21 72 2.2E-7 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 Pfam PF01546 Peptidase family M20/M25/M40 86 463 2.5E-31 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 116 154 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 Gene3D G3DSA:3.40.630.10 16 465 2.3E-171 T 13-10-2018 BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 SUPERFAMILY SSF53187 4 466 5.19E-63 T 13-10-2018 BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 Gene3D G3DSA:3.30.70.360 205 292 2.3E-171 T 13-10-2018 BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 TIGRFAM TIGR01887 dipeptidaselike: putative dipeptidase 16 462 2.0E-173 T 13-10-2018 IPR010964 Peptidase M20A, peptidase V-related GO:0008270|GO:0016805 BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 Gene3D G3DSA:3.30.70.360 186 381 2.3E-171 T 13-10-2018 BMD_4827 b8927d4605c7afc5dac9e7b5c37b41e7 467 SUPERFAMILY SSF55031 186 379 8.67E-55 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_2659 5f8e0c3947261877ee358e72529b794b 419 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 137 150 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BMD_2659 5f8e0c3947261877ee358e72529b794b 419 Gene3D G3DSA:1.10.8.60 285 352 1.3E-21 T 13-10-2018 BMD_2659 5f8e0c3947261877ee358e72529b794b 419 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 326 335 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BMD_2659 5f8e0c3947261877ee358e72529b794b 419 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 200 215 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_2659 5f8e0c3947261877ee358e72529b794b 419 SMART SM00382 133 281 4.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2659 5f8e0c3947261877ee358e72529b794b 419 Pfam PF00158 Sigma-54 interaction domain 113 280 2.4E-65 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BMD_2659 5f8e0c3947261877ee358e72529b794b 419 Gene3D G3DSA:3.40.50.300 99 284 4.2E-65 T 13-10-2018 BMD_2659 5f8e0c3947261877ee358e72529b794b 419 SUPERFAMILY SSF46689 363 414 5.73E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_2659 5f8e0c3947261877ee358e72529b794b 419 SUPERFAMILY SSF52540 113 347 9.09E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2659 5f8e0c3947261877ee358e72529b794b 419 Gene3D G3DSA:1.10.10.60 366 416 7.0E-6 T 13-10-2018 BMD_2097 1edd5aef46e3ad5c30a7ae05d709ca56 229 SUPERFAMILY SSF48613 3 222 1.08E-67 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BMD_2097 1edd5aef46e3ad5c30a7ae05d709ca56 229 Gene3D G3DSA:1.20.910.10 1 226 9.3E-70 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BMD_2097 1edd5aef46e3ad5c30a7ae05d709ca56 229 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 13 216 1.1E-58 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 BMD_2097 1edd5aef46e3ad5c30a7ae05d709ca56 229 PIRSF PIRSF003170 1 219 4.3E-30 T 13-10-2018 IPR026285 TenA_E protein BMD_2097 1edd5aef46e3ad5c30a7ae05d709ca56 229 Pfam PF03070 TENA/THI-4/PQQC family 9 216 5.6E-52 T 13-10-2018 IPR004305 Thiaminase-2/PQQC BMD_1109 22cedab772b75bd414ab8505a87e6227 248 Gene3D G3DSA:3.60.20.10 3 225 4.2E-28 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_1109 22cedab772b75bd414ab8505a87e6227 248 Pfam PF13537 Glutamine amidotransferase domain 54 165 1.0E-18 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BMD_1109 22cedab772b75bd414ab8505a87e6227 248 SUPERFAMILY SSF56235 1 224 4.54E-28 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0058 e790705527218f9b10a4061ad7238bde 292 Gene3D G3DSA:1.10.8.100 220 290 2.1E-22 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 BMD_0058 e790705527218f9b10a4061ad7238bde 292 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 20 288 56.218 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BMD_0058 e790705527218f9b10a4061ad7238bde 292 Pfam PF00398 Ribosomal RNA adenine dimethylase 20 279 4.6E-78 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BMD_0058 e790705527218f9b10a4061ad7238bde 292 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 52 79 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 BMD_0058 e790705527218f9b10a4061ad7238bde 292 SMART SM00650 36 212 8.8E-86 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 BMD_0058 e790705527218f9b10a4061ad7238bde 292 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 20 286 3.3E-86 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BMD_0058 e790705527218f9b10a4061ad7238bde 292 Gene3D G3DSA:3.40.50.150 2 216 6.3E-73 T 13-10-2018 BMD_0058 e790705527218f9b10a4061ad7238bde 292 SUPERFAMILY SSF53335 16 289 5.31E-74 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_3652 28bf73406d24e6e84fd76ac399e8f4b4 188 SUPERFAMILY SSF52218 4 176 1.05E-40 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3652 28bf73406d24e6e84fd76ac399e8f4b4 188 Gene3D G3DSA:3.40.50.360 1 183 6.0E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3652 28bf73406d24e6e84fd76ac399e8f4b4 188 Pfam PF03358 NADPH-dependent FMN reductase 5 146 2.3E-32 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BMD_3883 a64ef64aedef8bb26dbb0b924749298b 177 SMART SM00347 37 137 1.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3883 a64ef64aedef8bb26dbb0b924749298b 177 Pfam PF01047 MarR family 44 101 4.5E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3883 a64ef64aedef8bb26dbb0b924749298b 177 Gene3D G3DSA:1.10.10.10 2 167 1.4E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3883 a64ef64aedef8bb26dbb0b924749298b 177 SUPERFAMILY SSF46785 22 130 1.28E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3083 45c71e0e0482432bbc45902975ae9fe8 221 Pfam PF02607 B12 binding domain 6 71 1.2E-9 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_3083 45c71e0e0482432bbc45902975ae9fe8 221 Gene3D G3DSA:3.40.50.280 89 211 7.1E-28 T 13-10-2018 BMD_3083 45c71e0e0482432bbc45902975ae9fe8 221 Gene3D G3DSA:1.10.1240.10 5 78 1.1E-7 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_3083 45c71e0e0482432bbc45902975ae9fe8 221 SUPERFAMILY SSF52242 89 191 6.02E-20 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_3083 45c71e0e0482432bbc45902975ae9fe8 221 Pfam PF02310 B12 binding domain 93 183 1.2E-14 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_3083 45c71e0e0482432bbc45902975ae9fe8 221 SUPERFAMILY SSF47644 5 61 1.83E-5 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_2141 581b384a13b32e286b8a4776f7d41aff 255 Pfam PF01978 Sugar-specific transcriptional regulator TrmB 8 71 2.6E-22 T 13-10-2018 IPR002831 Transcription regulator TrmB, N-terminal BMD_2141 581b384a13b32e286b8a4776f7d41aff 255 Gene3D G3DSA:1.10.10.10 1 111 4.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2141 581b384a13b32e286b8a4776f7d41aff 255 SUPERFAMILY SSF46785 2 71 2.25E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4809 1803848f72b4c1967849bc0512d74ee0 371 Pfam PF02073 Thermophilic metalloprotease (M29) 3 335 9.7E-60 T 13-10-2018 IPR000787 Peptidase M29 GO:0004177|GO:0006508 BMD_4809 1803848f72b4c1967849bc0512d74ee0 371 Gene3D G3DSA:3.40.1830.10 3 165 1.2E-11 T 13-10-2018 IPR035097 Peptidase M29, N-terminal BMD_4809 1803848f72b4c1967849bc0512d74ee0 371 SUPERFAMILY SSF144052 1 360 1.7E-113 T 13-10-2018 BMD_3080 e56fd809b56d7e2c04afe97196ed6c95 305 Pfam PF00892 EamA-like transporter family 3 134 5.5E-12 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3080 e56fd809b56d7e2c04afe97196ed6c95 305 Pfam PF00892 EamA-like transporter family 148 287 5.4E-20 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3080 e56fd809b56d7e2c04afe97196ed6c95 305 SUPERFAMILY SSF103481 37 137 1.27E-10 T 13-10-2018 BMD_3080 e56fd809b56d7e2c04afe97196ed6c95 305 SUPERFAMILY SSF103481 186 288 5.1E-14 T 13-10-2018 BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 SUPERFAMILY SSF53474 4 266 1.07E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 10 267 38.051 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 Pfam PF00561 alpha/beta hydrolase fold 20 146 3.7E-28 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 Gene3D G3DSA:3.40.50.1820 5 268 1.5E-71 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 19 266 1.9E-87 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 3.3E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 3.3E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_4876 f8a6b15f9860d04d1c827b046d98f26b 269 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 3.3E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_0077 5f77d1c5c3ca4bacdfcdafbd74c86ad8 88 PIRSF PIRSF038881 1 88 1.2E-33 T 13-10-2018 IPR025490 RNA-binding protein, HP1423 type BMD_0077 5f77d1c5c3ca4bacdfcdafbd74c86ad8 88 SMART SM00363 1 64 1.1E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0077 5f77d1c5c3ca4bacdfcdafbd74c86ad8 88 Pfam PF01479 S4 domain 1 47 5.9E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0077 5f77d1c5c3ca4bacdfcdafbd74c86ad8 88 Gene3D G3DSA:3.10.290.10 1 88 4.6E-24 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_0077 5f77d1c5c3ca4bacdfcdafbd74c86ad8 88 SUPERFAMILY SSF55174 1 76 1.11E-19 T 13-10-2018 BMD_2434 dca7a88c1ba3fa7a4ddfd801ac0af483 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 160 171 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_2434 dca7a88c1ba3fa7a4ddfd801ac0af483 503 SUPERFAMILY SSF56801 2 501 1.2E-129 T 13-10-2018 BMD_2434 dca7a88c1ba3fa7a4ddfd801ac0af483 503 Pfam PF00501 AMP-binding enzyme 9 406 2.6E-97 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_2434 dca7a88c1ba3fa7a4ddfd801ac0af483 503 Gene3D G3DSA:3.30.300.30 402 501 1.0E-27 T 13-10-2018 BMD_2434 dca7a88c1ba3fa7a4ddfd801ac0af483 503 Gene3D G3DSA:3.40.50.12780 1 401 3.1E-104 T 13-10-2018 BMD_2434 dca7a88c1ba3fa7a4ddfd801ac0af483 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 416 489 3.2E-16 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_2459 f029d250eb9b24393378eb2b537b6f4f 170 Pfam PF03167 Uracil DNA glycosylase superfamily 6 150 1.4E-23 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_2459 f029d250eb9b24393378eb2b537b6f4f 170 Gene3D G3DSA:3.40.470.10 4 169 2.7E-64 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_2459 f029d250eb9b24393378eb2b537b6f4f 170 SUPERFAMILY SSF52141 4 166 1.74E-41 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BMD_5184 128eb7422975ce67b133a61ffe41d784 435 Gene3D G3DSA:1.20.1250.30 235 412 1.1E-169 T 13-10-2018 BMD_5184 128eb7422975ce67b133a61ffe41d784 435 SMART SM00471 57 187 3.4E-13 T 13-10-2018 IPR003607 HD/PDEase domain BMD_5184 128eb7422975ce67b133a61ffe41d784 435 Pfam PF01966 HD domain 61 181 8.5E-17 T 13-10-2018 IPR006674 HD domain BMD_5184 128eb7422975ce67b133a61ffe41d784 435 Gene3D G3DSA:1.10.3210.10 11 401 1.1E-169 T 13-10-2018 BMD_5184 128eb7422975ce67b133a61ffe41d784 435 SUPERFAMILY SSF109604 5 418 7.33E-122 T 13-10-2018 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 Gene3D G3DSA:1.20.1720.10 2 236 4.5E-49 T 13-10-2018 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 Pfam PF07690 Major Facilitator Superfamily 7 280 1.1E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 Gene3D G3DSA:1.20.1250.20 241 430 2.5E-25 T 13-10-2018 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 SUPERFAMILY SSF103473 2 417 1.57E-66 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 PRINTS PR01036 Tetracycline resistance protein TetB signature 191 209 1.5E-9 T 13-10-2018 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 PRINTS PR01036 Tetracycline resistance protein TetB signature 282 306 1.5E-9 T 13-10-2018 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 PRINTS PR01036 Tetracycline resistance protein TetB signature 65 87 1.5E-9 T 13-10-2018 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 PRINTS PR01036 Tetracycline resistance protein TetB signature 126 150 1.5E-9 T 13-10-2018 BMD_3505 dab0b5298cd20405dd5673e7db49da2f 434 PRINTS PR01036 Tetracycline resistance protein TetB signature 5 29 1.5E-9 T 13-10-2018 BMD_4163 29d942ed7ff0c084c3f7e69cb5bb91dd 258 Pfam PF01311 Bacterial export proteins, family 1 10 244 2.9E-69 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BMD_4163 29d942ed7ff0c084c3f7e69cb5bb91dd 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 177 199 7.6E-27 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BMD_4163 29d942ed7ff0c084c3f7e69cb5bb91dd 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 17 38 7.6E-27 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BMD_4163 29d942ed7ff0c084c3f7e69cb5bb91dd 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 74 93 7.6E-27 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BMD_4163 29d942ed7ff0c084c3f7e69cb5bb91dd 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 199 218 7.6E-27 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BMD_4163 29d942ed7ff0c084c3f7e69cb5bb91dd 258 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 10 250 1.4E-66 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 BMD_3697 f1f210ed966328349135511841f6573d 296 Pfam PF13580 SIS domain 35 164 6.6E-9 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_3697 f1f210ed966328349135511841f6573d 296 SUPERFAMILY SSF53697 4 247 3.34E-73 T 13-10-2018 BMD_3697 f1f210ed966328349135511841f6573d 296 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 5 294 2.1E-125 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BMD_3697 f1f210ed966328349135511841f6573d 296 Gene3D G3DSA:3.40.50.10490 1 217 3.6E-76 T 13-10-2018 BMD_3697 f1f210ed966328349135511841f6573d 296 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 1 294 43.514 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BMD_3697 f1f210ed966328349135511841f6573d 296 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 184 201 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 BMD_3697 f1f210ed966328349135511841f6573d 296 Gene3D G3DSA:1.10.8.1080 218 295 7.2E-30 T 13-10-2018 BMD_0500 82540bd38d234793d9c27dd1e52e5477 288 PIRSF PIRSF006483 1 275 4.9E-74 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_0500 82540bd38d234793d9c27dd1e52e5477 288 Gene3D G3DSA:3.30.70.120 188 263 4.2E-20 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_0500 82540bd38d234793d9c27dd1e52e5477 288 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 7 210 4.1E-56 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_0500 82540bd38d234793d9c27dd1e52e5477 288 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 218 270 1.1E-18 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_3198 0534ca114b137b8bff41be934aeb277e 440 Pfam PF04326 Putative DNA-binding domain 38 152 4.9E-13 T 13-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 BMD_3198 0534ca114b137b8bff41be934aeb277e 440 Gene3D G3DSA:3.30.950.30 27 161 1.4E-19 T 13-10-2018 IPR038461 Schlafen, AAA domain superfamily BMD_2983 e44ef833ceda8afa4b77c9bc7b54ebfc 212 Pfam PF03824 High-affinity nickel-transport protein 6 76 4.8E-7 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 BMD_2983 e44ef833ceda8afa4b77c9bc7b54ebfc 212 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 109 196 1.9E-5 T 13-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 Gene3D G3DSA:3.90.180.10 4 366 1.0E-128 T 13-10-2018 BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 139 4.0E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 21 9.6E-10 T 13-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 Pfam PF00107 Zinc-binding dehydrogenase 190 257 1.9E-11 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 Gene3D G3DSA:3.40.50.720 170 339 1.0E-128 T 13-10-2018 BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 SUPERFAMILY SSF50129 1 179 1.05E-59 T 13-10-2018 IPR011032 GroES-like superfamily BMD_2194 0314ba3a9aab7bb7c7360dcd60f26c94 379 SUPERFAMILY SSF51735 157 339 9.64E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 SUPERFAMILY SSF53223 8 273 6.62E-101 T 13-10-2018 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PRINTS PR00072 Malic enzyme signature 245 263 8.4E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PRINTS PR00072 Malic enzyme signature 150 179 8.4E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PRINTS PR00072 Malic enzyme signature 412 428 8.4E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PRINTS PR00072 Malic enzyme signature 186 208 8.4E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PRINTS PR00072 Malic enzyme signature 270 286 8.4E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PRINTS PR00072 Malic enzyme signature 88 112 8.4E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PRINTS PR00072 Malic enzyme signature 301 317 8.4E-68 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 SMART SM00919 274 534 8.6E-119 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 Gene3D G3DSA:3.40.50.10380 16 271 1.5E-104 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 PIRSF PIRSF000106 1 565 9.6E-227 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 Pfam PF00390 Malic enzyme, N-terminal domain 82 263 3.9E-72 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 SMART SM01274 82 264 6.7E-91 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 Pfam PF03949 Malic enzyme, NAD binding domain 274 534 2.1E-101 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 SUPERFAMILY SSF51735 274 565 1.84E-91 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 Gene3D G3DSA:3.40.50.720 272 570 5.6E-108 T 13-10-2018 BMD_3745 8e76df77d827aa6c3ce5ac732a52965d 571 ProSitePatterns PS00331 Malic enzymes signature. 270 286 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BMD_0450 814b67c60d279c6087516c667c6289e0 589 Pfam PF01964 Radical SAM ThiC family 132 552 3.9E-205 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BMD_0450 814b67c60d279c6087516c667c6289e0 589 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 131 555 3.1E-224 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BMD_0450 814b67c60d279c6087516c667c6289e0 589 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 131 557 99.626 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BMD_0450 814b67c60d279c6087516c667c6289e0 589 Gene3D G3DSA:3.20.20.540 175 488 1.3E-155 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BMD_0450 814b67c60d279c6087516c667c6289e0 589 Pfam PF13667 ThiC-associated domain 13 90 5.5E-34 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 PIRSF PIRSF500176 43 370 1.4E-74 T 13-10-2018 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 PIRSF PIRSF001220 41 370 3.6E-90 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 PRINTS PR00139 Asparaginase/glutaminase family signature 306 324 8.5E-24 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 PRINTS PR00139 Asparaginase/glutaminase family signature 127 145 8.5E-24 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 PRINTS PR00139 Asparaginase/glutaminase family signature 47 58 8.5E-24 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 31 370 1.3E-150 T 13-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 Gene3D G3DSA:3.40.50.1170 42 258 3.5E-88 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 Gene3D G3DSA:3.40.50.40 259 370 3.0E-40 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 49 57 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 Pfam PF00710 Asparaginase, N-terminal 46 240 3.0E-60 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 SMART SM00870 46 364 1.1E-139 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BMD_3733 ecf8fadf7ed03d4b2f043a1be0c3f303 370 SUPERFAMILY SSF53774 45 369 3.66E-100 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 BMD_2338 b7566d49a83dde34948690e68f27d8b2 159 Gene3D G3DSA:3.40.630.30 14 159 1.1E-21 T 13-10-2018 BMD_2338 b7566d49a83dde34948690e68f27d8b2 159 SUPERFAMILY SSF55729 24 158 1.36E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2338 b7566d49a83dde34948690e68f27d8b2 159 Pfam PF00583 Acetyltransferase (GNAT) family 58 135 3.1E-12 T 13-10-2018 IPR000182 GNAT domain BMD_1354 43189266595652ae5902163d4c500827 621 Gene3D G3DSA:1.20.210.10 3 526 1.9E-197 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 18 520 4.6E-205 T 13-10-2018 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005886|GO:0015990|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 BMD_1354 43189266595652ae5902163d4c500827 621 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 25 467 1.1E-145 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 244 298 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 16 41 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 425 446 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 63 86 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 312 333 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 375 394 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 347 365 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 132 144 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 242 263 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 288 303 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 191 210 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 162 180 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 PRINTS PR01165 Cytochrome c oxidase subunit I signature 90 114 1.3E-99 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1354 43189266595652ae5902163d4c500827 621 SUPERFAMILY SSF81442 20 549 1.31E-174 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_2962 df51d4ed71bc283f65e5e881d84c5d0f 427 SMART SM00382 27 218 3.3E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2962 df51d4ed71bc283f65e5e881d84c5d0f 427 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2962 df51d4ed71bc283f65e5e881d84c5d0f 427 Gene3D G3DSA:3.40.50.300 1 258 2.9E-64 T 13-10-2018 BMD_2962 df51d4ed71bc283f65e5e881d84c5d0f 427 SUPERFAMILY SSF52540 2 223 1.45E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2962 df51d4ed71bc283f65e5e881d84c5d0f 427 Pfam PF00005 ABC transporter 19 169 1.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0314 9c9af80fb13a5d15e45ee8e475357341 216 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 2.7E-29 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_0314 9c9af80fb13a5d15e45ee8e475357341 216 Gene3D G3DSA:1.10.3720.10 7 215 7.3E-54 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0314 9c9af80fb13a5d15e45ee8e475357341 216 SUPERFAMILY SSF161098 14 204 1.06E-44 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0314 9c9af80fb13a5d15e45ee8e475357341 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 212 3.5E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0463 43dc4f5c2f34f5797bf4418cdccf3051 311 Gene3D G3DSA:1.10.3720.10 68 309 2.7E-68 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0463 43dc4f5c2f34f5797bf4418cdccf3051 311 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 306 1.9E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0463 43dc4f5c2f34f5797bf4418cdccf3051 311 SUPERFAMILY SSF161098 72 298 7.46E-59 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4239 528748332ec214064e1c2190abc30807 257 SUPERFAMILY SSF63380 2 100 2.69E-23 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BMD_4239 528748332ec214064e1c2190abc30807 257 PIRSF PIRSF006816 1 257 3.5E-73 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 BMD_4239 528748332ec214064e1c2190abc30807 257 Gene3D G3DSA:2.10.240.10 216 257 1.3E-19 T 13-10-2018 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily BMD_4239 528748332ec214064e1c2190abc30807 257 SUPERFAMILY SSF52343 95 256 2.36E-31 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_4239 528748332ec214064e1c2190abc30807 257 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 216 255 1.6E-16 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain BMD_4239 528748332ec214064e1c2190abc30807 257 Hamap MF_01211 Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [pyrK]. 4 257 37.829 T 13-10-2018 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit BMD_4239 528748332ec214064e1c2190abc30807 257 Gene3D G3DSA:3.40.50.80 103 215 7.8E-26 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BMD_4239 528748332ec214064e1c2190abc30807 257 Gene3D G3DSA:2.40.30.10 2 98 4.8E-28 T 13-10-2018 BMD_3884 c6b1b3a0a503dfcce73165e16cea19f2 287 Pfam PF11738 Protein of unknown function (DUF3298) 193 273 2.5E-18 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 BMD_3884 c6b1b3a0a503dfcce73165e16cea19f2 287 Gene3D G3DSA:3.30.565.40 75 188 1.1E-25 T 13-10-2018 BMD_3884 c6b1b3a0a503dfcce73165e16cea19f2 287 Gene3D G3DSA:3.90.640.20 189 287 6.6E-39 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily BMD_0084 9c7b207f20a25df794fbe5e22e69782b 825 SMART SM00331 593 805 1.0E-58 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0084 9c7b207f20a25df794fbe5e22e69782b 825 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 620 805 8.1E-35 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0084 9c7b207f20a25df794fbe5e22e69782b 825 Gene3D G3DSA:3.60.40.10 587 825 6.6E-52 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0084 9c7b207f20a25df794fbe5e22e69782b 825 TIGRFAM TIGR02865 spore_II_E: stage II sporulation protein E 46 805 5.1E-269 T 13-10-2018 IPR014221 Sporulation stage II, protein E KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0084 9c7b207f20a25df794fbe5e22e69782b 825 SMART SM00332 326 803 6.2E-6 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0084 9c7b207f20a25df794fbe5e22e69782b 825 SUPERFAMILY SSF81606 597 806 2.09E-20 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_4484 309bf76c927b7d156844a9adc2930f47 210 Gene3D G3DSA:3.60.15.10 1 210 1.3E-65 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4484 309bf76c927b7d156844a9adc2930f47 210 SUPERFAMILY SSF56281 1 208 1.9E-53 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4484 309bf76c927b7d156844a9adc2930f47 210 SMART SM00849 12 191 2.4E-41 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4484 309bf76c927b7d156844a9adc2930f47 210 Pfam PF00753 Metallo-beta-lactamase superfamily 9 191 6.3E-32 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4682 7d86cc0d0f0433ff96380033ff396d60 369 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 355 50.678 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 BMD_4682 7d86cc0d0f0433ff96380033ff396d60 369 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 350 6.0E-167 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 BMD_4682 7d86cc0d0f0433ff96380033ff396d60 369 SUPERFAMILY SSF53659 4 355 1.42E-126 T 13-10-2018 BMD_4682 7d86cc0d0f0433ff96380033ff396d60 369 SMART SM01329 4 351 1.7E-206 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_4682 7d86cc0d0f0433ff96380033ff396d60 369 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 243 262 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BMD_4682 7d86cc0d0f0433ff96380033ff396d60 369 Gene3D G3DSA:3.40.718.10 2 369 6.2E-157 T 13-10-2018 BMD_4682 7d86cc0d0f0433ff96380033ff396d60 369 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 351 8.6E-142 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BMD_3782 d4ff2c0186ec7a0552a216f3c466d8e0 162 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 160 35.702 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3782 d4ff2c0186ec7a0552a216f3c466d8e0 162 Pfam PF01967 MoaC family 15 152 6.5E-53 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3782 d4ff2c0186ec7a0552a216f3c466d8e0 162 SUPERFAMILY SSF55040 11 157 1.31E-57 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3782 d4ff2c0186ec7a0552a216f3c466d8e0 162 Gene3D G3DSA:3.30.70.640 1 162 1.0E-67 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_3782 d4ff2c0186ec7a0552a216f3c466d8e0 162 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 154 1.3E-64 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 Hamap MF_01679 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [mtnW]. 2 408 59.953 T 13-10-2018 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase GO:0000287|GO:0019509|GO:0043715 KEGG: 00270+5.3.2.5|MetaCyc: PWY-4361 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 Pfam PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain 3 115 1.2E-6 T 13-10-2018 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 SUPERFAMILY SSF54966 1 121 2.09E-31 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 Gene3D G3DSA:3.20.20.110 122 413 7.6E-101 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 Gene3D G3DSA:3.30.70.150 1 121 3.5E-31 T 13-10-2018 IPR036422 RuBisCO large subunit, N-terminal domain superfamily GO:0015977|GO:0016984 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 127 296 2.1E-21 T 13-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 Pfam PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain 318 407 1.6E-20 T 13-10-2018 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 TIGRFAM TIGR03332 salvage_mtnW: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 2 408 2.1E-217 T 13-10-2018 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase GO:0000287|GO:0019509|GO:0043715 KEGG: 00270+5.3.2.5|MetaCyc: PWY-4361 BMD_1234 b1e1bc779c2062dff4dcd43205d9a595 414 SUPERFAMILY SSF51649 122 410 3.66E-89 T 13-10-2018 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily GO:0000287 KEGG: 00630+4.1.1.39|KEGG: 00710+4.1.1.39|MetaCyc: PWY-5532|MetaCyc: PWY-5723 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 Gene3D G3DSA:1.20.140.10 218 396 4.2E-52 T 13-10-2018 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 135 207 1.9E-9 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 Gene3D G3DSA:1.10.540.10 13 120 6.4E-25 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 Gene3D G3DSA:2.40.110.10 122 217 2.1E-25 T 13-10-2018 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 SUPERFAMILY SSF56645 11 215 1.02E-40 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 11 115 1.0E-9 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 240 370 9.2E-17 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 PIRSF PIRSF016578 1 378 1.1E-31 T 13-10-2018 BMD_0871 212f3608eff5e3fd1cb7ca53a3adfeaa 396 SUPERFAMILY SSF47203 231 389 1.27E-16 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_3689 c56cf558b2f8896f62ac1e058ac1e2e2 271 SUPERFAMILY SSF158430 4 127 1.06E-21 T 13-10-2018 BMD_3689 c56cf558b2f8896f62ac1e058ac1e2e2 271 SUPERFAMILY SSF158430 128 252 9.94E-14 T 13-10-2018 BMD_3689 c56cf558b2f8896f62ac1e058ac1e2e2 271 Pfam PF11155 Domain of unknown function (DUF2935) 4 118 1.1E-17 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 BMD_3689 c56cf558b2f8896f62ac1e058ac1e2e2 271 Pfam PF11155 Domain of unknown function (DUF2935) 133 249 1.7E-13 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 BMD_3689 c56cf558b2f8896f62ac1e058ac1e2e2 271 Gene3D G3DSA:1.20.1260.120 2 268 4.3E-74 T 13-10-2018 BMD_0045 db05cc7e8583b7fb08d65bc8a5d0629a 474 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 407 461 2.0E-10 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 BMD_0045 db05cc7e8583b7fb08d65bc8a5d0629a 474 Gene3D G3DSA:3.90.1150.150 278 363 2.9E-109 T 13-10-2018 BMD_0045 db05cc7e8583b7fb08d65bc8a5d0629a 474 SUPERFAMILY SSF53383 6 361 1.26E-77 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0045 db05cc7e8583b7fb08d65bc8a5d0629a 474 Gene3D G3DSA:3.90.105.10 410 465 2.0E-19 T 13-10-2018 BMD_0045 db05cc7e8583b7fb08d65bc8a5d0629a 474 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 6 309 1.8E-75 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BMD_0045 db05cc7e8583b7fb08d65bc8a5d0629a 474 Gene3D G3DSA:3.40.640.10 47 277 2.9E-109 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0045 db05cc7e8583b7fb08d65bc8a5d0629a 474 SUPERFAMILY SSF55904 334 465 2.62E-22 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 BMD_1678 8ff100cccc3b0cbbd843935920551654 103 Pfam PF00893 Small Multidrug Resistance protein 1 93 6.5E-17 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BMD_1678 8ff100cccc3b0cbbd843935920551654 103 Gene3D G3DSA:1.10.3730.20 1 103 2.4E-23 T 13-10-2018 BMD_1678 8ff100cccc3b0cbbd843935920551654 103 SUPERFAMILY SSF103481 5 101 3.79E-12 T 13-10-2018 BMD_1801 054bfb037a445b9cc721ca49470fb174 101 SUPERFAMILY SSF89957 2 98 3.92E-26 T 13-10-2018 IPR029756 MTH1187/YkoF-like BMD_1801 054bfb037a445b9cc721ca49470fb174 101 Pfam PF01910 Thiamine-binding protein 5 95 6.5E-26 T 13-10-2018 IPR002767 Thiamine-binding protein BMD_1801 054bfb037a445b9cc721ca49470fb174 101 TIGRFAM TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family 4 96 4.6E-23 T 13-10-2018 IPR002767 Thiamine-binding protein BMD_1801 054bfb037a445b9cc721ca49470fb174 101 Gene3D G3DSA:3.30.70.930 1 99 1.9E-28 T 13-10-2018 IPR029756 MTH1187/YkoF-like BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 10 344 1.7E-165 T 13-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 SUPERFAMILY SSF55804 492 628 4.06E-39 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 Gene3D G3DSA:3.40.50.2300 369 470 5.2E-38 T 13-10-2018 BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 Pfam PF02378 Phosphotransferase system, EIIC 19 278 5.0E-17 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 380 464 5.7E-12 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 Gene3D G3DSA:3.40.930.10 490 630 2.3E-43 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 SUPERFAMILY SSF52794 378 467 6.15E-26 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 492 629 3.6E-34 T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_0196 3396fadc6dd046d6b59ce175e0ae2631 630 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 536 552 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_2102 3ae86244f4b5dc03037a895137df308b 343 Gene3D G3DSA:1.10.260.40 3 63 1.2E-22 T 13-10-2018 BMD_2102 3ae86244f4b5dc03037a895137df308b 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 13-10-2018 BMD_2102 3ae86244f4b5dc03037a895137df308b 343 SUPERFAMILY SSF47413 4 62 5.28E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2102 3ae86244f4b5dc03037a895137df308b 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 6.3E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2102 3ae86244f4b5dc03037a895137df308b 343 SMART SM00354 4 74 6.2E-28 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_2102 3ae86244f4b5dc03037a895137df308b 343 SUPERFAMILY SSF53822 82 340 5.22E-64 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_2102 3ae86244f4b5dc03037a895137df308b 343 Pfam PF13377 Periplasmic binding protein-like domain 177 339 2.1E-34 T 13-10-2018 BMD_2102 3ae86244f4b5dc03037a895137df308b 343 Gene3D G3DSA:3.40.50.2300 83 331 1.3E-67 T 13-10-2018 BMD_2102 3ae86244f4b5dc03037a895137df308b 343 Gene3D G3DSA:3.40.50.2300 167 337 1.3E-67 T 13-10-2018 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 PRINTS PR01043 Glycyl-tRNA synthetase signature 168 185 1.1E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 PRINTS PR01043 Glycyl-tRNA synthetase signature 404 423 1.1E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 PRINTS PR01043 Glycyl-tRNA synthetase signature 324 336 1.1E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 PRINTS PR01043 Glycyl-tRNA synthetase signature 217 227 1.1E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 PRINTS PR01043 Glycyl-tRNA synthetase signature 147 159 1.1E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 PRINTS PR01043 Glycyl-tRNA synthetase signature 200 217 1.1E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 PRINTS PR01043 Glycyl-tRNA synthetase signature 24 38 1.1E-53 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 4 243 6.9E-94 T 13-10-2018 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 SUPERFAMILY SSF55681 4 372 1.74E-126 T 13-10-2018 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 2 459 52.11 T 13-10-2018 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 Gene3D G3DSA:3.40.50.800 365 458 6.3E-32 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 SUPERFAMILY SSF52954 356 456 3.62E-32 T 13-10-2018 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 164 340 2.2E-11 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0286 d69d180f93321b2fb6e55bc3bb6b260b 460 Pfam PF03129 Anticodon binding domain 369 456 5.2E-22 T 13-10-2018 IPR004154 Anticodon-binding BMD_0811 4f29cf284470a06fa4738854c3e9bd9d 169 Gene3D G3DSA:3.10.129.10 1 165 2.2E-57 T 13-10-2018 BMD_0811 4f29cf284470a06fa4738854c3e9bd9d 169 Pfam PF03061 Thioesterase superfamily 25 99 2.3E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_0811 4f29cf284470a06fa4738854c3e9bd9d 169 SUPERFAMILY SSF54637 2 154 1.1E-46 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_0378 c1cd78fc1ed3cb9e5c82bac9d596866d 307 Gene3D G3DSA:1.20.1510.10 22 219 1.3E-47 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_0378 c1cd78fc1ed3cb9e5c82bac9d596866d 307 Pfam PF01545 Cation efflux family 26 219 8.0E-49 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_0378 c1cd78fc1ed3cb9e5c82bac9d596866d 307 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 22 298 3.4E-93 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_0378 c1cd78fc1ed3cb9e5c82bac9d596866d 307 SUPERFAMILY SSF160240 223 296 8.37E-9 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BMD_0378 c1cd78fc1ed3cb9e5c82bac9d596866d 307 SUPERFAMILY SSF161111 21 220 5.62E-59 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_3333 91fc2fecbc59eb69a028f7d575277d31 310 Pfam PF00107 Zinc-binding dehydrogenase 165 260 6.0E-14 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_3333 91fc2fecbc59eb69a028f7d575277d31 310 Gene3D G3DSA:3.40.50.720 145 252 1.8E-89 T 13-10-2018 BMD_3333 91fc2fecbc59eb69a028f7d575277d31 310 SUPERFAMILY SSF50129 1 161 3.5E-31 T 13-10-2018 IPR011032 GroES-like superfamily BMD_3333 91fc2fecbc59eb69a028f7d575277d31 310 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 100 3.4E-6 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_3333 91fc2fecbc59eb69a028f7d575277d31 310 SUPERFAMILY SSF51735 127 292 1.86E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3333 91fc2fecbc59eb69a028f7d575277d31 310 Gene3D G3DSA:3.90.180.10 13 300 1.8E-89 T 13-10-2018 BMD_3333 91fc2fecbc59eb69a028f7d575277d31 310 SMART SM00829 10 300 6.3E-13 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_3601 c95cacbf615bee598245b9cc193404e8 319 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 315 1.2E-99 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 BMD_3601 c95cacbf615bee598245b9cc193404e8 319 Gene3D G3DSA:1.20.58.340 127 237 1.7E-30 T 13-10-2018 BMD_3601 c95cacbf615bee598245b9cc193404e8 319 SUPERFAMILY SSF143865 13 247 1.96E-65 T 13-10-2018 BMD_3601 c95cacbf615bee598245b9cc193404e8 319 SUPERFAMILY SSF144083 250 312 2.62E-22 T 13-10-2018 BMD_3601 c95cacbf615bee598245b9cc193404e8 319 Pfam PF01544 CorA-like Mg2+ transporter protein 29 310 1.0E-77 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BMD_3601 c95cacbf615bee598245b9cc193404e8 319 Gene3D G3DSA:1.20.58.340 238 315 1.5E-31 T 13-10-2018 BMD_3601 c95cacbf615bee598245b9cc193404e8 319 Gene3D G3DSA:3.30.460.20 7 126 3.4E-33 T 13-10-2018 BMD_3282 bcdb5d1872cf96933a43aa10bf2eb7f0 402 Gene3D G3DSA:3.50.50.60 31 388 6.8E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3282 bcdb5d1872cf96933a43aa10bf2eb7f0 402 SUPERFAMILY SSF51905 29 389 2.05E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3282 bcdb5d1872cf96933a43aa10bf2eb7f0 402 Pfam PF01266 FAD dependent oxidoreductase 30 383 3.1E-43 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BMD_3282 bcdb5d1872cf96933a43aa10bf2eb7f0 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 30 52 3.1E-5 T 13-10-2018 BMD_3282 bcdb5d1872cf96933a43aa10bf2eb7f0 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 228 243 3.1E-5 T 13-10-2018 BMD_3282 bcdb5d1872cf96933a43aa10bf2eb7f0 402 Gene3D G3DSA:3.30.9.10 123 344 6.8E-59 T 13-10-2018 BMD_0785 182fe452770a19658a04019405a0b498 505 TIGRFAM TIGR02320 PEP_mutase: phosphoenolpyruvate mutase 7 278 7.8E-116 T 13-10-2018 IPR012698 Phosphoenolpyruvate phosphomutase, core GO:0050188 KEGG: 00440+5.4.2.9|MetaCyc: PWY-5757|MetaCyc: PWY-6322|MetaCyc: PWY-6682|MetaCyc: PWY-6839|MetaCyc: PWY-7419|MetaCyc: PWY-7510|MetaCyc: PWY-7769 BMD_0785 182fe452770a19658a04019405a0b498 505 Gene3D G3DSA:3.90.550.10 286 499 2.5E-5 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0785 182fe452770a19658a04019405a0b498 505 Gene3D G3DSA:3.20.20.60 1 274 1.3E-83 T 13-10-2018 BMD_0785 182fe452770a19658a04019405a0b498 505 SUPERFAMILY SSF51621 1 287 1.26E-74 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BMD_0785 182fe452770a19658a04019405a0b498 505 Pfam PF13714 Phosphoenolpyruvate phosphomutase 7 252 2.3E-64 T 13-10-2018 BMD_1441 2e907bc77a5472f0674c392def199680 257 Pfam PF10127 Predicted nucleotidyltransferase 1 246 2.0E-47 T 13-10-2018 IPR018775 Nucleotidyltransferase, predicted BMD_2787 b49ed1ab8f8a3c5b30f870d7871c7585 65 Pfam PF08858 IDEAL domain 25 61 5.0E-12 T 13-10-2018 IPR014957 IDEAL domain BMD_2787 b49ed1ab8f8a3c5b30f870d7871c7585 65 SMART SM00914 25 61 7.3E-7 T 13-10-2018 IPR014957 IDEAL domain BMD_2787 b49ed1ab8f8a3c5b30f870d7871c7585 65 Gene3D G3DSA:4.10.810.10 10 65 8.3E-19 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_2358 339b05c666aca6a9e2cf5bc69f75ec25 580 Gene3D G3DSA:3.40.720.10 1 578 3.7E-82 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_2358 339b05c666aca6a9e2cf5bc69f75ec25 580 Pfam PF00884 Sulfatase 5 385 2.2E-56 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BMD_2358 339b05c666aca6a9e2cf5bc69f75ec25 580 SUPERFAMILY SSF53649 3 557 1.83E-77 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_3139 ef33781fb4c818d726f3539a1420a41e 351 Gene3D G3DSA:3.20.20.70 1 349 5.7E-114 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3139 ef33781fb4c818d726f3539a1420a41e 351 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 336 1.9E-86 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BMD_3139 ef33781fb4c818d726f3539a1420a41e 351 SUPERFAMILY SSF51395 4 343 1.16E-106 T 13-10-2018 BMD_3091 10cbc1552dc224d2efc1af433174c74c 61 SUPERFAMILY SSF140500 14 60 2.75E-12 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_3091 10cbc1552dc224d2efc1af433174c74c 61 Pfam PF09388 Spo0E like sporulation regulatory protein 16 56 2.1E-12 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 BMD_3091 10cbc1552dc224d2efc1af433174c74c 61 Gene3D G3DSA:1.20.58.990 5 60 1.2E-9 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_4725 1a1bfdf522df03e9b44b1add4be163eb 181 Pfam PF02674 Colicin V production protein 2 159 4.2E-31 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 BMD_4798 7f62c9d69c9018f230350fafadc1f50b 402 ProSitePatterns PS00455 Putative AMP-binding domain signature. 210 221 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_4798 7f62c9d69c9018f230350fafadc1f50b 402 Pfam PF00501 AMP-binding enzyme 52 379 1.9E-70 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_4798 7f62c9d69c9018f230350fafadc1f50b 402 Gene3D G3DSA:3.40.50.12780 15 385 7.3E-93 T 13-10-2018 BMD_4798 7f62c9d69c9018f230350fafadc1f50b 402 SUPERFAMILY SSF56801 18 379 2.09E-91 T 13-10-2018 BMD_0293 939e2680b1878ba0aa6a7b264b81c12f 485 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 12 477 1.2E-206 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_0293 939e2680b1878ba0aa6a7b264b81c12f 485 Pfam PF01425 Amidase 24 465 2.8E-163 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_0293 939e2680b1878ba0aa6a7b264b81c12f 485 Gene3D G3DSA:3.90.1300.10 2 485 1.1E-201 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_0293 939e2680b1878ba0aa6a7b264b81c12f 485 ProSitePatterns PS00571 Amidases signature. 152 183 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 BMD_0293 939e2680b1878ba0aa6a7b264b81c12f 485 SUPERFAMILY SSF75304 1 483 2.35E-170 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_0293 939e2680b1878ba0aa6a7b264b81c12f 485 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 477 96.524 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_4881 c8e9a36d90b458031aaa66d40873a0df 803 Pfam PF00343 Carbohydrate phosphorylase 93 794 0.0 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BMD_4881 c8e9a36d90b458031aaa66d40873a0df 803 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 638 650 - T 13-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BMD_4881 c8e9a36d90b458031aaa66d40873a0df 803 PIRSF PIRSF000460 3 802 9.2E-243 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BMD_4881 c8e9a36d90b458031aaa66d40873a0df 803 Gene3D G3DSA:3.40.50.2000 14 794 0.0 T 13-10-2018 BMD_4881 c8e9a36d90b458031aaa66d40873a0df 803 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 4 794 0.0 T 13-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BMD_4881 c8e9a36d90b458031aaa66d40873a0df 803 Gene3D G3DSA:3.40.50.2000 460 787 0.0 T 13-10-2018 BMD_4881 c8e9a36d90b458031aaa66d40873a0df 803 SUPERFAMILY SSF53756 4 796 0.0 T 13-10-2018 BMD_5088 cb4f40477564fa5431f557d19583d8f7 133 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 120 2.5E-42 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BMD_5088 cb4f40477564fa5431f557d19583d8f7 133 PIRSF PIRSF039090 1 128 7.3E-35 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BMD_5088 cb4f40477564fa5431f557d19583d8f7 133 Gene3D G3DSA:1.20.120.340 1 121 3.9E-39 T 13-10-2018 BMD_5088 cb4f40477564fa5431f557d19583d8f7 133 SUPERFAMILY SSF101116 4 123 1.44E-37 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 BMD_5088 cb4f40477564fa5431f557d19583d8f7 133 Pfam PF02561 Flagellar protein FliS 7 118 3.9E-38 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BMD_2750 3aa859dd10c7efe5b38aa5e837accfed 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 13 377 1.4E-113 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_2750 3aa859dd10c7efe5b38aa5e837accfed 394 SUPERFAMILY SSF56796 9 388 1.26E-113 T 13-10-2018 BMD_2750 3aa859dd10c7efe5b38aa5e837accfed 394 Gene3D G3DSA:1.20.1090.10 186 392 1.9E-69 T 13-10-2018 BMD_2750 3aa859dd10c7efe5b38aa5e837accfed 394 Gene3D G3DSA:3.40.50.1970 6 185 5.1E-48 T 13-10-2018 BMD_2750 3aa859dd10c7efe5b38aa5e837accfed 394 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_0802 858c2c0fa0b99afdbbdfa64419103aa0 312 Pfam PF00072 Response regulator receiver domain 4 114 9.0E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0802 858c2c0fa0b99afdbbdfa64419103aa0 312 SMART SM00448 1 114 3.7E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0802 858c2c0fa0b99afdbbdfa64419103aa0 312 Pfam PF08664 YcbB domain 161 296 5.0E-50 T 13-10-2018 IPR013972 YcbB domain BMD_0802 858c2c0fa0b99afdbbdfa64419103aa0 312 SUPERFAMILY SSF52172 2 129 6.26E-21 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0802 858c2c0fa0b99afdbbdfa64419103aa0 312 Gene3D G3DSA:3.40.50.2300 1 130 5.0E-21 T 13-10-2018 BMD_4932 5079342846e8165b6b9976a23105cade 76 Pfam PF04070 Domain of unknown function (DUF378) 4 61 5.8E-27 T 13-10-2018 IPR007211 Protein of unknown function DUF378 BMD_3024 ed2c94989676abd4c508fc563a22b31d 323 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 39 235 5.8E-49 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 BMD_3024 ed2c94989676abd4c508fc563a22b31d 323 Pfam PF10503 Esterase PHB depolymerase 38 240 2.0E-55 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 BMD_3024 ed2c94989676abd4c508fc563a22b31d 323 SUPERFAMILY SSF53474 31 318 3.7E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3024 ed2c94989676abd4c508fc563a22b31d 323 Gene3D G3DSA:3.40.50.1820 9 322 4.7E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3241 e88b91b926b02314fef37f0875df6ba2 274 SUPERFAMILY SSF102114 26 198 1.7E-9 T 13-10-2018 BMD_3241 e88b91b926b02314fef37f0875df6ba2 274 Gene3D G3DSA:3.80.30.30 66 215 9.4E-6 T 13-10-2018 BMD_3241 e88b91b926b02314fef37f0875df6ba2 274 SMART SM00729 23 253 0.0064 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_3241 e88b91b926b02314fef37f0875df6ba2 274 Pfam PF04055 Radical SAM superfamily 28 195 1.0E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Gene3D G3DSA:2.120.10.90 497 807 1.2E-127 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 9 807 0.0 T 13-10-2018 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Gene3D G3DSA:3.90.199.10 33 486 1.1E-219 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 472 1.2E-161 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 555 599 5.9E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 661 705 8.4E-14 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 612 655 6.0E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 710 757 3.0E-14 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 760 806 1.2E-11 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 505 551 9.9E-14 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Gene3D G3DSA:1.10.268.10 370 459 1.1E-219 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 SUPERFAMILY SSF56719 31 488 3.01E-183 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 6 808 25.107 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 Gene3D G3DSA:3.30.1360.40 237 333 1.1E-219 T 13-10-2018 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 SMART SM00434 12 465 5.3E-300 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_0006 9c816940e3aeaa7486cdad6aea6c70b5 836 SUPERFAMILY SSF101904 500 819 3.66E-113 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BMD_5016 5fe2bf70ab3d1bb8b80040250b4b4845 213 SUPERFAMILY SSF55469 10 209 6.02E-56 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_5016 5fe2bf70ab3d1bb8b80040250b4b4845 213 Pfam PF00881 Nitroreductase family 15 193 4.3E-29 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_5016 5fe2bf70ab3d1bb8b80040250b4b4845 213 Gene3D G3DSA:3.40.109.10 3 213 6.8E-60 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_1911 856b8657a7002f048fc91673852cec88 505 Pfam PF07519 Tannase and feruloyl esterase 106 236 1.6E-5 T 13-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 BMD_1911 856b8657a7002f048fc91673852cec88 505 SUPERFAMILY SSF53474 225 474 1.58E-12 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4846 c9938cb1d39ce12d8770637c5a44885a 381 SUPERFAMILY SSF53756 2 372 7.85E-83 T 13-10-2018 BMD_4846 c9938cb1d39ce12d8770637c5a44885a 381 Gene3D G3DSA:3.40.50.2000 185 353 9.7E-43 T 13-10-2018 BMD_4846 c9938cb1d39ce12d8770637c5a44885a 381 Pfam PF00534 Glycosyl transferases group 1 188 348 1.3E-38 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_4846 c9938cb1d39ce12d8770637c5a44885a 381 Gene3D G3DSA:3.40.50.2000 1 184 8.6E-28 T 13-10-2018 BMD_4846 c9938cb1d39ce12d8770637c5a44885a 381 Pfam PF13439 Glycosyltransferase Family 4 14 177 5.0E-26 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BMD_3995 8b47f5fdce27f20fde6775fcd7d907a6 272 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 39 263 7.5E-49 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BMD_3995 8b47f5fdce27f20fde6775fcd7d907a6 272 SUPERFAMILY SSF51695 33 269 1.39E-73 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_3995 8b47f5fdce27f20fde6775fcd7d907a6 272 Gene3D G3DSA:3.20.20.190 20 272 5.8E-91 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_2775 97033564361ebcc97dd7f8fdf88e0b43 480 SUPERFAMILY SSF56801 3 472 4.97E-89 T 13-10-2018 BMD_2775 97033564361ebcc97dd7f8fdf88e0b43 480 Gene3D G3DSA:3.40.50.12780 1 354 1.2E-123 T 13-10-2018 BMD_2775 97033564361ebcc97dd7f8fdf88e0b43 480 Gene3D G3DSA:3.30.300.30 355 480 4.4E-45 T 13-10-2018 BMD_2775 97033564361ebcc97dd7f8fdf88e0b43 480 ProSitePatterns PS00455 Putative AMP-binding domain signature. 68 79 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_2775 97033564361ebcc97dd7f8fdf88e0b43 480 Pfam PF00501 AMP-binding enzyme 4 360 1.0E-67 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_3153 e2f4e003aa4a9cfd4c6d1b71d76d300e 102 TIGRFAM TIGR02901 QoxD: cytochrome aa3 quinol oxidase, subunit IV 8 98 6.9E-33 T 13-10-2018 IPR014250 Quinol oxidase subunit IV GO:0016021|GO:0016682|GO:0042773 BMD_3153 e2f4e003aa4a9cfd4c6d1b71d76d300e 102 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 17 89 6.2E-12 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 BMD_4498 caf398c5c3f7e8e30eede1ed75a055ab 269 Pfam PF00005 ABC transporter 38 194 2.9E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4498 caf398c5c3f7e8e30eede1ed75a055ab 269 SUPERFAMILY SSF52540 13 255 1.69E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4498 caf398c5c3f7e8e30eede1ed75a055ab 269 ProSitePatterns PS00211 ABC transporters family signature. 166 180 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4498 caf398c5c3f7e8e30eede1ed75a055ab 269 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 23 269 1.0E-125 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 BMD_4498 caf398c5c3f7e8e30eede1ed75a055ab 269 Gene3D G3DSA:3.40.50.300 21 267 2.2E-64 T 13-10-2018 BMD_4498 caf398c5c3f7e8e30eede1ed75a055ab 269 SMART SM00382 47 241 6.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 SMART SM00388 165 228 4.5E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 357 4.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 309 323 4.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 375 4.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 PRINTS PR00344 Bacterial sensor protein C-terminal signature 327 337 4.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 SUPERFAMILY SSF55874 223 376 1.11E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 SUPERFAMILY SSF47384 161 226 4.71E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 SMART SM00065 6 152 1.1E-4 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 SUPERFAMILY SSF55781 11 144 1.55E-15 T 13-10-2018 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 271 377 2.1E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 Gene3D G3DSA:3.30.450.40 6 148 5.1E-14 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 Pfam PF01590 GAF domain 65 137 9.8E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 Pfam PF00512 His Kinase A (phospho-acceptor) domain 167 223 1.6E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 Gene3D G3DSA:3.30.565.10 226 378 3.8E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 SMART SM00387 270 378 3.8E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3280 294de941dbe7c79beffeb1e65c27d162 378 Gene3D G3DSA:1.10.287.130 150 225 3.9E-15 T 13-10-2018 BMD_4304 d2754e0b9b15624d0c8e4ce498cbd5bc 367 Gene3D G3DSA:3.40.640.10 43 268 1.0E-116 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4304 d2754e0b9b15624d0c8e4ce498cbd5bc 367 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 2 360 61.402 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 BMD_4304 d2754e0b9b15624d0c8e4ce498cbd5bc 367 Gene3D G3DSA:3.90.1150.10 20 350 1.0E-116 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4304 d2754e0b9b15624d0c8e4ce498cbd5bc 367 SUPERFAMILY SSF53383 13 359 2.99E-81 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4304 d2754e0b9b15624d0c8e4ce498cbd5bc 367 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 220 229 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 BMD_4304 d2754e0b9b15624d0c8e4ce498cbd5bc 367 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 5 358 1.3E-112 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 BMD_4304 d2754e0b9b15624d0c8e4ce498cbd5bc 367 Pfam PF00155 Aminotransferase class I and II 30 354 1.3E-58 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 ProSitePatterns PS00216 Sugar transport proteins signature 1. 64 80 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 SUPERFAMILY SSF103473 8 395 2.49E-75 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2114 cd055514984c3390130e9f3d7013e93b 405 PRINTS PR01035 Tetracycline resistance protein signature 341 364 1.5E-22 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 PRINTS PR01035 Tetracycline resistance protein signature 135 157 1.5E-22 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 PRINTS PR01035 Tetracycline resistance protein signature 163 183 1.5E-22 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 PRINTS PR01035 Tetracycline resistance protein signature 281 302 1.5E-22 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 PRINTS PR01035 Tetracycline resistance protein signature 20 36 1.5E-22 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 Gene3D G3DSA:1.20.1250.20 3 389 2.4E-75 T 13-10-2018 BMD_2114 cd055514984c3390130e9f3d7013e93b 405 Pfam PF07690 Major Facilitator Superfamily 14 229 9.3E-43 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_5082 1f99212e79bd1c55fa4449ee8f12aa3b 586 Gene3D G3DSA:2.60.40.380 60 168 1.2E-41 T 13-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 BMD_5082 1f99212e79bd1c55fa4449ee8f12aa3b 586 Gene3D G3DSA:3.60.21.70 169 586 4.8E-172 T 13-10-2018 IPR038607 PhoD-like superfamily BMD_5082 1f99212e79bd1c55fa4449ee8f12aa3b 586 SUPERFAMILY SSF56300 175 516 2.66E-41 T 13-10-2018 BMD_5082 1f99212e79bd1c55fa4449ee8f12aa3b 586 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 70 165 1.8E-31 T 13-10-2018 IPR032093 Phospholipase D, N-terminal BMD_5082 1f99212e79bd1c55fa4449ee8f12aa3b 586 Pfam PF09423 PhoD-like phosphatase 178 515 1.9E-117 T 13-10-2018 IPR018946 Alkaline phosphatase D-related BMD_5037 3ecea02080234a78f548e54381675931 394 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 Pfam PF00162 Phosphoglycerate kinase 6 383 9.4E-168 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 312 337 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 190 209 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 167 189 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 5.1E-100 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 Gene3D G3DSA:3.40.50.1260 169 383 1.1E-167 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 PIRSF PIRSF000724 1 394 4.4E-160 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 SUPERFAMILY SSF53748 1 393 2.0E-166 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 43.123 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5037 3ecea02080234a78f548e54381675931 394 Gene3D G3DSA:3.40.50.1260 7 391 1.1E-167 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 ProSitePatterns PS00737 Thiolases signature 2. 334 350 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 Gene3D G3DSA:3.40.47.10 5 271 1.4E-137 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 386 6.0E-133 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 SUPERFAMILY SSF53901 266 386 1.29E-39 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 ProSitePatterns PS00099 Thiolases active site. 369 382 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 80 98 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 PIRSF PIRSF000429 2 387 9.7E-113 T 13-10-2018 IPR002155 Thiolase GO:0016747 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 Gene3D G3DSA:3.40.47.10 122 385 1.4E-137 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 Pfam PF00108 Thiolase, N-terminal domain 5 258 7.7E-86 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 Pfam PF02803 Thiolase, C-terminal domain 266 386 5.7E-44 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BMD_5171 42ca2587d2700d13e3142fe448f02f6f 387 SUPERFAMILY SSF53901 4 264 9.27E-76 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_0637 b41e97e8d3c9b3413b9d0917a8acdf0a 427 SUPERFAMILY SSF51621 8 423 1.84E-158 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BMD_0637 b41e97e8d3c9b3413b9d0917a8acdf0a 427 Gene3D G3DSA:3.20.20.60 5 406 4.9E-172 T 13-10-2018 BMD_0637 b41e97e8d3c9b3413b9d0917a8acdf0a 427 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 7 246 1.1E-104 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BMD_0637 b41e97e8d3c9b3413b9d0917a8acdf0a 427 Pfam PF00463 Isocitrate lyase family 248 423 4.2E-51 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BMD_0637 b41e97e8d3c9b3413b9d0917a8acdf0a 427 Pfam PF00463 Isocitrate lyase family 11 246 1.5E-57 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BMD_0637 b41e97e8d3c9b3413b9d0917a8acdf0a 427 ProSitePatterns PS00161 Isocitrate lyase signature. 184 189 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 BMD_0637 b41e97e8d3c9b3413b9d0917a8acdf0a 427 PIRSF PIRSF001362 1 426 1.4E-240 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BMD_4064 85979efff53bfaa578875ce2e4d25143 141 ProDom PD086666 YNEK BH2332 11 141 5.0E-44 T 13-10-2018 IPR020203 Uncharacterised protein family, YneK BMD_4064 85979efff53bfaa578875ce2e4d25143 141 Pfam PF11084 Protein of unknown function (DUF2621) 3 141 1.1E-72 T 13-10-2018 IPR020203 Uncharacterised protein family, YneK BMD_1418 e72baf2109ec4cda48df464adb047646 348 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 249 339 1.6E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1418 e72baf2109ec4cda48df464adb047646 348 SMART SM00387 248 341 8.2E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1418 e72baf2109ec4cda48df464adb047646 348 Pfam PF07730 Histidine kinase 145 212 2.2E-16 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BMD_1418 e72baf2109ec4cda48df464adb047646 348 PIRSF PIRSF037431 2 347 6.3E-123 T 13-10-2018 IPR017202 Sensor histidine kinase LiaS/VraS GO:0000155|GO:0000160|GO:0004673|GO:0016021 BMD_1418 e72baf2109ec4cda48df464adb047646 348 SUPERFAMILY SSF55874 221 339 3.27E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1418 e72baf2109ec4cda48df464adb047646 348 Gene3D G3DSA:3.30.565.10 210 345 4.6E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3291 65df6503b1dfb764647b3e002e7e0a38 306 SUPERFAMILY SSF103481 45 151 5.75E-8 T 13-10-2018 BMD_3291 65df6503b1dfb764647b3e002e7e0a38 306 SUPERFAMILY SSF103481 197 296 3.66E-11 T 13-10-2018 BMD_3291 65df6503b1dfb764647b3e002e7e0a38 306 Pfam PF00892 EamA-like transporter family 8 149 1.3E-20 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3291 65df6503b1dfb764647b3e002e7e0a38 306 Pfam PF00892 EamA-like transporter family 162 292 8.3E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_5187 1a9638dc28bed20b95a8a835487b8443 283 SUPERFAMILY SSF55681 7 271 1.66E-67 T 13-10-2018 BMD_5187 1a9638dc28bed20b95a8a835487b8443 283 Hamap MF_02119 Lipoyl-[GcvH]:protein N-lipoyltransferase [lipL]. 7 279 49.866 T 13-10-2018 IPR024897 Octanoyltransferase LipL GO:0009107|GO:0009249|GO:0016415 MetaCyc: PWY-6987 BMD_5187 1a9638dc28bed20b95a8a835487b8443 283 Gene3D G3DSA:3.30.930.10 4 282 8.5E-81 T 13-10-2018 BMD_5187 1a9638dc28bed20b95a8a835487b8443 283 Pfam PF03099 Biotin/lipoate A/B protein ligase family 79 185 4.2E-12 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BMD_1144 2a31438e1eac01e01042b5ecea3e4ecb 325 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 34 58 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_1144 2a31438e1eac01e01042b5ecea3e4ecb 325 Pfam PF00294 pfkB family carbohydrate kinase 1 312 7.7E-80 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_1144 2a31438e1eac01e01042b5ecea3e4ecb 325 Gene3D G3DSA:3.40.1190.20 2 324 1.7E-103 T 13-10-2018 IPR029056 Ribokinase-like BMD_1144 2a31438e1eac01e01042b5ecea3e4ecb 325 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 252 265 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_1144 2a31438e1eac01e01042b5ecea3e4ecb 325 SUPERFAMILY SSF53613 1 318 2.81E-87 T 13-10-2018 IPR029056 Ribokinase-like BMD_1193 0ff033b3f9eabbfe487f015f6202d4d0 433 PIRSF PIRSF005353 1 433 7.3E-168 T 13-10-2018 IPR026033 Purine permease PbuG-like BMD_1193 0ff033b3f9eabbfe487f015f6202d4d0 433 Pfam PF00860 Permease family 14 394 1.2E-69 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_3867 5b7538c3ae06071f8e1cc88b5289425c 145 Pfam PF14040 Deoxyribonuclease NucA/NucB 50 134 2.4E-11 T 13-10-2018 IPR029476 Deoxyribonuclease NucA/NucB BMD_4348 c15d4062319dffda4f5935cb6724d5b4 349 PIRSF PIRSF021350 2 349 8.6E-95 T 13-10-2018 IPR008308 Uncharacterised conserved protein UCP021350 BMD_4348 c15d4062319dffda4f5935cb6724d5b4 349 Pfam PF14493 Helix-turn-helix domain 257 344 1.1E-24 T 13-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BMD_1865 289e6fd3e9d92afae6ca293c9843fc61 165 Gene3D G3DSA:3.40.50.620 8 147 3.0E-40 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_1865 289e6fd3e9d92afae6ca293c9843fc61 165 Pfam PF00582 Universal stress protein family 6 147 6.7E-35 T 13-10-2018 IPR006016 UspA BMD_1865 289e6fd3e9d92afae6ca293c9843fc61 165 SUPERFAMILY SSF52402 6 149 2.6E-35 T 13-10-2018 BMD_1865 289e6fd3e9d92afae6ca293c9843fc61 165 PRINTS PR01438 Universal stress protein signature 125 147 3.3E-18 T 13-10-2018 IPR006015 Universal stress protein A BMD_1865 289e6fd3e9d92afae6ca293c9843fc61 165 PRINTS PR01438 Universal stress protein signature 107 119 3.3E-18 T 13-10-2018 IPR006015 Universal stress protein A BMD_1865 289e6fd3e9d92afae6ca293c9843fc61 165 PRINTS PR01438 Universal stress protein signature 6 24 3.3E-18 T 13-10-2018 IPR006015 Universal stress protein A BMD_1865 289e6fd3e9d92afae6ca293c9843fc61 165 PIRSF PIRSF006276 2 150 4.8E-23 T 13-10-2018 IPR006015 Universal stress protein A BMD_2811 fe93887d26e01c0253b68d5288095ffd 204 Pfam PF02293 AmiS/UreI family transporter 1 164 6.2E-47 T 13-10-2018 IPR003211 AmiS/UreI transporter GO:0016020 BMD_2811 fe93887d26e01c0253b68d5288095ffd 204 Gene3D G3DSA:1.25.40.600 1 167 1.7E-40 T 13-10-2018 IPR038523 AmiS/UreI transporter superfamily BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 250 4.4E-57 T 13-10-2018 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 Gene3D G3DSA:3.30.1240.10 81 180 1.5E-65 T 13-10-2018 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 ProSitePatterns PS01229 Hypothetical cof family signature 2. 205 227 - T 13-10-2018 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 224 4.6E-25 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 Gene3D G3DSA:3.40.50.1000 4 247 1.5E-65 T 13-10-2018 IPR023214 HAD superfamily BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 205 224 5.6E-5 T 13-10-2018 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 228 240 5.6E-5 T 13-10-2018 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 7 21 5.6E-5 T 13-10-2018 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 249 1.5E-51 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_3436 cdae69d64e2ed3fd38e7a7ad704f752c 257 SUPERFAMILY SSF56784 3 254 1.63E-61 T 13-10-2018 IPR036412 HAD-like superfamily BMD_0526 ea9afb0060851462e6587aefcb50459b 672 Gene3D G3DSA:1.20.1480.50 277 369 4.2E-16 T 13-10-2018 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 460 623 1.1E-38 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 Gene3D G3DSA:1.10.287.950 370 670 1.2E-61 T 13-10-2018 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 Pfam PF02743 Cache domain 34 274 7.6E-35 T 13-10-2018 IPR033479 Double Cache domain 1 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 SMART SM00283 395 670 4.9E-65 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 SUPERFAMILY SSF58104 334 670 2.62E-67 T 13-10-2018 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 SUPERFAMILY SSF103190 110 202 3.06E-11 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_0526 ea9afb0060851462e6587aefcb50459b 672 Gene3D G3DSA:3.30.450.20 76 192 1.2E-20 T 13-10-2018 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 SMART SM00304 314 366 3.1E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_0526 ea9afb0060851462e6587aefcb50459b 672 Pfam PF00672 HAMP domain 314 360 7.6E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 SUPERFAMILY SSF103473 8 490 9.02E-66 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 1.3E-12 T 13-10-2018 BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 109 129 1.3E-12 T 13-10-2018 BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 1.3E-12 T 13-10-2018 BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 303 327 1.3E-12 T 13-10-2018 BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 Gene3D G3DSA:1.20.1720.10 15 223 7.2E-40 T 13-10-2018 BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 483 6.3E-129 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_3918 319dfffb9c0259958dde49e05cbe06fd 507 Pfam PF07690 Major Facilitator Superfamily 19 410 1.6E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_4717 23c11bcc4348ce9ea25cca7d834be1a7 257 SMART SM00893 21 211 1.9E-64 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BMD_4717 23c11bcc4348ce9ea25cca7d834be1a7 257 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 BMD_4717 23c11bcc4348ce9ea25cca7d834be1a7 257 SUPERFAMILY SSF52402 1 251 1.47E-77 T 13-10-2018 BMD_4717 23c11bcc4348ce9ea25cca7d834be1a7 257 Gene3D G3DSA:3.40.50.620 1 256 3.5E-85 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_4717 23c11bcc4348ce9ea25cca7d834be1a7 257 PIRSF PIRSF000090 1 257 8.4E-79 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 BMD_4717 23c11bcc4348ce9ea25cca7d834be1a7 257 Pfam PF01012 Electron transfer flavoprotein domain 23 206 3.4E-53 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 4.2E-110 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 Gene3D G3DSA:3.30.190.20 21 225 3.0E-87 T 13-10-2018 BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 45.21 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 SUPERFAMILY SSF56808 6 225 5.1E-86 T 13-10-2018 IPR023674 Ribosomal protein L1-like BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 PIRSF PIRSF002155 1 227 9.2E-85 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 8.3E-58 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 Gene3D G3DSA:3.40.50.790 68 159 3.0E-87 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich BMD_0122 bea583c6b6cf52f2438b2aae343daed5 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0215 9733fb900ab368777b150b578ac57040 503 SMART SM00490 254 335 3.8E-36 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0215 9733fb900ab368777b150b578ac57040 503 Gene3D G3DSA:3.40.50.300 2 207 3.5E-76 T 13-10-2018 BMD_0215 9733fb900ab368777b150b578ac57040 503 SMART SM00487 21 218 4.1E-65 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_0215 9733fb900ab368777b150b578ac57040 503 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 149 157 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BMD_0215 9733fb900ab368777b150b578ac57040 503 Pfam PF00270 DEAD/DEAH box helicase 26 190 1.6E-50 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_0215 9733fb900ab368777b150b578ac57040 503 Gene3D G3DSA:3.40.50.300 210 436 4.9E-54 T 13-10-2018 BMD_0215 9733fb900ab368777b150b578ac57040 503 Pfam PF00271 Helicase conserved C-terminal domain 227 335 2.7E-31 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_0215 9733fb900ab368777b150b578ac57040 503 SUPERFAMILY SSF52540 71 356 1.88E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0215 9733fb900ab368777b150b578ac57040 503 Hamap MF_01493 DEAD-box ATP-dependent RNA helicase CshA [cshA]. 2 502 44.866 T 13-10-2018 IPR030880 DEAD-box ATP-dependent RNA helicase CshA GO:0004004|GO:0005524|GO:0010501 BMD_3378 9a9bc84cb74ffe751652d1fd919c6d56 256 Gene3D G3DSA:3.10.310.50 21 168 5.3E-50 T 13-10-2018 BMD_3378 9a9bc84cb74ffe751652d1fd919c6d56 256 Pfam PF04536 TPM domain 36 159 1.2E-38 T 13-10-2018 IPR007621 TPM domain BMD_2623 62bdbeeea7ab0391a66fb4b2d8cc2dc6 692 Pfam PF13185 GAF domain 136 283 1.1E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_2623 62bdbeeea7ab0391a66fb4b2d8cc2dc6 692 SUPERFAMILY SSF55781 118 297 2.4E-21 T 13-10-2018 BMD_2623 62bdbeeea7ab0391a66fb4b2d8cc2dc6 692 Pfam PF13556 PucR C-terminal helix-turn-helix domain 630 685 9.2E-20 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain BMD_2623 62bdbeeea7ab0391a66fb4b2d8cc2dc6 692 Gene3D G3DSA:3.30.450.40 104 301 4.8E-25 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_2623 62bdbeeea7ab0391a66fb4b2d8cc2dc6 692 Gene3D G3DSA:1.10.10.2840 562 690 1.5E-19 T 13-10-2018 BMD_2623 62bdbeeea7ab0391a66fb4b2d8cc2dc6 692 SMART SM00065 138 293 1.5E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_5165 31a0bca684acbbe3d3f12f6b0241a165 178 Pfam PF05066 HB1, ASXL, restriction endonuclease HTH domain 14 83 6.8E-12 T 13-10-2018 IPR007759 HB1/Asxl, restriction endonuclease HTH domain GO:0006351|GO:0006355 BMD_5165 31a0bca684acbbe3d3f12f6b0241a165 178 Gene3D G3DSA:1.10.10.1250 2 84 5.5E-31 T 13-10-2018 IPR038087 DNA-directed RNA polymerase subunit delta domain superfamily BMD_5165 31a0bca684acbbe3d3f12f6b0241a165 178 TIGRFAM TIGR04567 RNAP_delt_lowGC: DNA-directed RNA polymerase delta subunit 12 94 2.5E-33 T 13-10-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 BMD_5165 31a0bca684acbbe3d3f12f6b0241a165 178 Hamap MF_00357 Probable DNA-directed RNA polymerase subunit delta [rpoE]. 9 171 14.852 T 13-10-2018 IPR029757 DNA-directed RNA polymerase subunit delta GO:0006351|GO:0006355 BMD_1750 a21fe04998a358a15d929a96e642d62a 370 Pfam PF03845 Spore germination protein 5 324 1.1E-86 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_1750 a21fe04998a358a15d929a96e642d62a 370 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 5 363 1.1E-73 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_5059 1b0fa33d3f5d81de8fb3ae25274c88f8 393 PIRSF PIRSF001549 3 380 6.4E-86 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 BMD_5059 1b0fa33d3f5d81de8fb3ae25274c88f8 393 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 374 32.306 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 BMD_5059 1b0fa33d3f5d81de8fb3ae25274c88f8 393 Pfam PF13393 Histidyl-tRNA synthetase 12 319 5.6E-77 T 13-10-2018 BMD_5059 1b0fa33d3f5d81de8fb3ae25274c88f8 393 Gene3D G3DSA:3.40.50.12590 325 393 7.8E-18 T 13-10-2018 BMD_5059 1b0fa33d3f5d81de8fb3ae25274c88f8 393 SUPERFAMILY SSF55681 9 324 4.3E-65 T 13-10-2018 BMD_5059 1b0fa33d3f5d81de8fb3ae25274c88f8 393 Gene3D G3DSA:3.30.930.10 1 324 1.4E-106 T 13-10-2018 BMD_5059 1b0fa33d3f5d81de8fb3ae25274c88f8 393 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 14 323 5.8E-98 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 BMD_0325 df4a3280766748d5cfcbf5ce6ac395b5 310 Pfam PF00005 ABC transporter 20 159 4.9E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0325 df4a3280766748d5cfcbf5ce6ac395b5 310 SUPERFAMILY SSF52540 3 221 4.38E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0325 df4a3280766748d5cfcbf5ce6ac395b5 310 Pfam PF13732 Domain of unknown function (DUF4162) 212 301 3.2E-8 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 BMD_0325 df4a3280766748d5cfcbf5ce6ac395b5 310 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0325 df4a3280766748d5cfcbf5ce6ac395b5 310 Gene3D G3DSA:3.40.50.300 1 233 5.9E-61 T 13-10-2018 BMD_0325 df4a3280766748d5cfcbf5ce6ac395b5 310 SMART SM00382 28 207 1.7E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_5140 c3a5ce356c207c6aea32594671355e08 236 ProSitePatterns PS00449 ATP synthase a subunit signature. 165 174 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 Hamap MF_01393 ATP synthase subunit a [atpB]. 8 235 13.922 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 PRINTS PR00123 ATP synthase A subunit signature 162 184 2.3E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 PRINTS PR00123 ATP synthase A subunit signature 215 230 2.3E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 PRINTS PR00123 ATP synthase A subunit signature 78 94 2.3E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 PRINTS PR00123 ATP synthase A subunit signature 146 161 2.3E-19 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 15 231 6.6E-50 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 Gene3D G3DSA:1.20.120.220 71 236 2.5E-41 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 Pfam PF00119 ATP synthase A chain 21 229 6.9E-58 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5140 c3a5ce356c207c6aea32594671355e08 236 SUPERFAMILY SSF81336 70 229 4.97E-41 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_4290 6bf2047257e5298f514279a3ee1b5705 91 PIRSF PIRSF031653 1 91 3.8E-35 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 BMD_4290 6bf2047257e5298f514279a3ee1b5705 91 Hamap MF_01126 UPF0298 protein . 1 78 22.418 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 BMD_4290 6bf2047257e5298f514279a3ee1b5705 91 Pfam PF09902 Uncharacterized protein conserved in bacteria (DUF2129) 5 74 7.9E-31 T 13-10-2018 IPR016979 Protein of unknown function DUF2129 BMD_4817 062d9c3c6b1a601370e839292a127711 357 Pfam PF05343 M42 glutamyl aminopeptidase 46 337 1.5E-109 T 13-10-2018 IPR008007 Peptidase M42 BMD_4817 062d9c3c6b1a601370e839292a127711 357 PIRSF PIRSF001123 2 356 5.0E-148 T 13-10-2018 IPR008007 Peptidase M42 BMD_4817 062d9c3c6b1a601370e839292a127711 357 SUPERFAMILY SSF53187 4 351 3.39E-68 T 13-10-2018 BMD_4817 062d9c3c6b1a601370e839292a127711 357 Gene3D G3DSA:3.40.630.10 10 340 8.7E-117 T 13-10-2018 BMD_4817 062d9c3c6b1a601370e839292a127711 357 SUPERFAMILY SSF101821 71 180 6.26E-31 T 13-10-2018 BMD_4817 062d9c3c6b1a601370e839292a127711 357 Gene3D G3DSA:2.40.30.40 75 162 8.7E-117 T 13-10-2018 IPR023367 Peptidase M42, domain 2 BMD_5185 98637a40a8a4e8b7f1ba5f25e361430a 74 Hamap MF_01863 UPF0741 protein . 1 74 31.008 T 13-10-2018 IPR020880 Protein of unknown function UPF0741 BMD_5185 98637a40a8a4e8b7f1ba5f25e361430a 74 Pfam PF07293 Protein of unknown function (DUF1450) 7 73 4.8E-10 T 13-10-2018 IPR009910 Protein of unknown function DUF1450 BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 Pfam PF07687 Peptidase dimerisation domain 181 270 5.4E-14 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 Pfam PF01546 Peptidase family M20/M25/M40 69 371 3.4E-34 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 SUPERFAMILY SSF53187 6 377 8.29E-81 T 13-10-2018 BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 Gene3D G3DSA:3.40.630.10 10 361 1.1E-137 T 13-10-2018 BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 10 364 5.7E-122 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 PIRSF PIRSF005962 2 378 3.4E-124 T 13-10-2018 IPR017439 Amidohydrolase GO:0016787 BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 Gene3D G3DSA:3.30.70.360 177 291 1.1E-137 T 13-10-2018 BMD_1184 4e0bdb341c9d6e0aa76c5ec4d5885a48 384 SUPERFAMILY SSF55031 179 292 5.76E-32 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 Gene3D G3DSA:1.20.140.10 214 392 1.2E-57 T 13-10-2018 BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 Gene3D G3DSA:2.40.110.10 117 213 9.4E-24 T 13-10-2018 BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 SUPERFAMILY SSF56645 18 211 9.42E-35 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 232 366 4.6E-20 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 Gene3D G3DSA:1.10.540.10 12 116 2.8E-22 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 110 9.2E-7 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 SUPERFAMILY SSF47203 229 386 2.26E-22 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_1583 6fbc8328385c301d31344a7e66cacf69 392 PIRSF PIRSF016578 1 389 2.1E-33 T 13-10-2018 BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 SUPERFAMILY SSF54106 29 71 1.11E-11 T 13-10-2018 BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 Pfam PF01476 LysM domain 30 71 6.8E-14 T 13-10-2018 IPR018392 LysM domain BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 Pfam PF01476 LysM domain 79 120 2.4E-13 T 13-10-2018 IPR018392 LysM domain BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 Gene3D G3DSA:3.10.350.10 25 75 9.7E-19 T 13-10-2018 IPR036779 LysM domain superfamily BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 Gene3D G3DSA:3.10.350.10 76 129 8.1E-19 T 13-10-2018 IPR036779 LysM domain superfamily BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 Pfam PF06725 3D domain 366 426 1.1E-21 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 Gene3D G3DSA:2.40.40.10 265 421 5.3E-7 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 SUPERFAMILY SSF50685 365 417 2.09E-10 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 SMART SM00257 78 121 2.6E-15 T 13-10-2018 IPR018392 LysM domain BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 SMART SM00257 29 72 3.2E-16 T 13-10-2018 IPR018392 LysM domain BMD_0478 f42f9aa07d13d15a019fe2c6423c6477 427 SUPERFAMILY SSF54106 77 120 1.44E-11 T 13-10-2018 BMD_0152 142765b9cc1439a371b48efa0ad6b166 60 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 13-10-2018 IPR018038 Ribosomal protein L30, conserved site BMD_0152 142765b9cc1439a371b48efa0ad6b166 60 Gene3D G3DSA:3.30.1390.20 1 59 5.5E-28 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily BMD_0152 142765b9cc1439a371b48efa0ad6b166 60 PIRSF PIRSF002211 1 60 5.3E-30 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0152 142765b9cc1439a371b48efa0ad6b166 60 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 3.1E-21 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BMD_0152 142765b9cc1439a371b48efa0ad6b166 60 SUPERFAMILY SSF55129 3 59 6.02E-22 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily BMD_0152 142765b9cc1439a371b48efa0ad6b166 60 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 20.558 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0152 142765b9cc1439a371b48efa0ad6b166 60 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 6 59 2.5E-26 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_1123 13e6de1f78732f595b0fa9b239d2dac2 250 Pfam PF02706 Chain length determinant protein 3 94 6.2E-21 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 BMD_1123 13e6de1f78732f595b0fa9b239d2dac2 250 Pfam PF13807 G-rich domain on putative tyrosine kinase 141 194 3.6E-8 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain BMD_3861 e72b031d5a142d980f84c1c9fec28f0b 118 SUPERFAMILY SSF159121 30 105 5.49E-10 T 13-10-2018 IPR036166 YxeA-like superfamily BMD_3861 e72b031d5a142d980f84c1c9fec28f0b 118 Gene3D G3DSA:2.40.50.480 25 108 7.9E-11 T 13-10-2018 IPR036166 YxeA-like superfamily BMD_3861 e72b031d5a142d980f84c1c9fec28f0b 118 Pfam PF06486 Protein of unknown function (DUF1093) 30 98 1.5E-6 T 13-10-2018 IPR006542 Protein of unknown function DUF1093 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 SUPERFAMILY SSF56235 3 536 6.95E-178 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 Gene3D G3DSA:3.60.20.40 356 536 6.4E-70 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 44 69 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 264 283 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 379 397 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 131 150 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 355 373 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 410 425 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 434 451 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 113 131 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 235 251 7.5E-42 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 Pfam PF01019 Gamma-glutamyltranspeptidase 37 531 4.7E-158 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 Gene3D G3DSA:1.10.246.130 251 355 2.3E-23 T 13-10-2018 BMD_3318 b06727102c792e5074f4c60b7fc1d495 536 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 22 528 6.8E-108 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 9.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 9.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 9.8E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.5E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 SUPERFAMILY SSF51735 2 254 8.87E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 Pfam PF00106 short chain dehydrogenase 6 192 3.3E-51 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 PIRSF PIRSF000126 1 258 5.6E-74 T 13-10-2018 BMD_2094 9a07d8f1339afc009b39fdee2d4750ef 259 Gene3D G3DSA:3.40.50.720 2 256 1.4E-60 T 13-10-2018 BMD_3056 b9c3759bf818ea1a9b44154d5c5c26c4 104 SUPERFAMILY SSF46785 5 93 2.72E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3056 b9c3759bf818ea1a9b44154d5c5c26c4 104 Pfam PF12840 Helix-turn-helix domain 17 72 7.3E-14 T 13-10-2018 BMD_3056 b9c3759bf818ea1a9b44154d5c5c26c4 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 2.3E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3056 b9c3759bf818ea1a9b44154d5c5c26c4 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 65 80 2.3E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3056 b9c3759bf818ea1a9b44154d5c5c26c4 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 2.3E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3056 b9c3759bf818ea1a9b44154d5c5c26c4 104 SMART SM00418 16 94 1.9E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3056 b9c3759bf818ea1a9b44154d5c5c26c4 104 Gene3D G3DSA:1.10.10.10 2 95 3.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5202 690a39996fda832ee7146e611d6228d6 289 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 280 5.9E-65 T 13-10-2018 BMD_5202 690a39996fda832ee7146e611d6228d6 289 Gene3D G3DSA:3.30.1240.10 82 209 6.5E-82 T 13-10-2018 BMD_5202 690a39996fda832ee7146e611d6228d6 289 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 280 7.2E-57 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_5202 690a39996fda832ee7146e611d6228d6 289 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 253 1.5E-32 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_5202 690a39996fda832ee7146e611d6228d6 289 SUPERFAMILY SSF56784 1 282 5.77E-68 T 13-10-2018 IPR036412 HAD-like superfamily BMD_5202 690a39996fda832ee7146e611d6228d6 289 Gene3D G3DSA:3.40.50.1000 3 277 6.5E-82 T 13-10-2018 IPR023214 HAD superfamily BMD_3992 5a56795fa09417138b11fec23ab58f96 296 PIRSF PIRSF006483 7 295 2.3E-99 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3992 5a56795fa09417138b11fec23ab58f96 296 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 233 287 3.6E-23 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_3992 5a56795fa09417138b11fec23ab58f96 296 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 25 227 1.9E-68 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3992 5a56795fa09417138b11fec23ab58f96 296 Gene3D G3DSA:3.30.70.120 205 280 6.4E-26 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_2731 56a6e6b935ad42d3a447b1285d23fcc3 500 Gene3D G3DSA:3.50.50.60 10 256 1.6E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2731 56a6e6b935ad42d3a447b1285d23fcc3 500 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 8 490 3.5E-221 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 BMD_2731 56a6e6b935ad42d3a447b1285d23fcc3 500 SUPERFAMILY SSF51905 6 274 4.14E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2731 56a6e6b935ad42d3a447b1285d23fcc3 500 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 4 492 54.799 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 BMD_2731 56a6e6b935ad42d3a447b1285d23fcc3 500 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 7 492 1.1E-240 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 BMD_2731 56a6e6b935ad42d3a447b1285d23fcc3 500 Gene3D G3DSA:3.30.9.10 113 178 1.6E-6 T 13-10-2018 BMD_0948 bff86fa3f27db0246dc893e594faa3a7 447 SUPERFAMILY SSF51556 57 363 1.08E-98 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_0948 bff86fa3f27db0246dc893e594faa3a7 447 Hamap MF_01281 5'-deoxyadenosine deaminase [dadD]. 3 439 40.172 T 13-10-2018 IPR023512 Deaminase MtaD/DadD GO:0019239 BMD_0948 bff86fa3f27db0246dc893e594faa3a7 447 Gene3D G3DSA:2.30.40.10 11 419 1.9E-143 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0948 bff86fa3f27db0246dc893e594faa3a7 447 SUPERFAMILY SSF51338 3 439 8.4E-31 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0948 bff86fa3f27db0246dc893e594faa3a7 447 Gene3D G3DSA:3.20.20.140 59 360 1.9E-143 T 13-10-2018 BMD_0948 bff86fa3f27db0246dc893e594faa3a7 447 Pfam PF01979 Amidohydrolase family 54 413 4.9E-78 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_2803 42e81b5adca83af998d4583818972db1 65 Pfam PF00892 EamA-like transporter family 2 48 9.0E-8 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2803 42e81b5adca83af998d4583818972db1 65 SUPERFAMILY SSF103481 1 49 2.48E-6 T 13-10-2018 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00690 Adhesin family signature 67 80 3.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00690 Adhesin family signature 80 97 3.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00690 Adhesin family signature 204 225 3.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00690 Adhesin family signature 36 54 3.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 SUPERFAMILY SSF53807 35 318 1.91E-81 T 13-10-2018 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 Gene3D G3DSA:3.40.50.1980 25 205 1.5E-58 T 13-10-2018 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 Pfam PF01297 Zinc-uptake complex component A periplasmic 39 317 3.7E-72 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 Gene3D G3DSA:3.40.50.1980 208 319 2.2E-38 T 13-10-2018 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00691 Adhesin B signature 61 79 1.8E-10 T 13-10-2018 IPR006129 Adhesin B GO:0007155 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00691 Adhesin B signature 297 315 1.8E-10 T 13-10-2018 IPR006129 Adhesin B GO:0007155 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00691 Adhesin B signature 36 57 1.8E-10 T 13-10-2018 IPR006129 Adhesin B GO:0007155 BMD_4862 532e7e8aaa89d6ab987690cba916d343 319 PRINTS PR00691 Adhesin B signature 80 99 1.8E-10 T 13-10-2018 IPR006129 Adhesin B GO:0007155 BMD_4164 24052b676659574328891fe77da372dd 89 PIRSF PIRSF004669 1 89 2.2E-35 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BMD_4164 24052b676659574328891fe77da372dd 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.3E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BMD_4164 24052b676659574328891fe77da372dd 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.3E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BMD_4164 24052b676659574328891fe77da372dd 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.3E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BMD_4164 24052b676659574328891fe77da372dd 89 Pfam PF01313 Bacterial export proteins, family 3 6 78 6.0E-32 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BMD_4164 24052b676659574328891fe77da372dd 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 86 4.0E-35 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 BMD_4167 4a87eb633197ca82ba3ee5a8f4445acb 120 Gene3D G3DSA:3.40.50.2300 2 120 7.5E-41 T 13-10-2018 BMD_4167 4a87eb633197ca82ba3ee5a8f4445acb 120 SMART SM00448 3 115 8.5E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4167 4a87eb633197ca82ba3ee5a8f4445acb 120 Pfam PF00072 Response regulator receiver domain 5 115 3.1E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4167 4a87eb633197ca82ba3ee5a8f4445acb 120 SUPERFAMILY SSF52172 3 119 1.99E-41 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2793 3f7c8fc7f0e503dbd64d53daf8f73b17 67 Pfam PF14169 Cold-inducible protein YdjO 5 58 9.2E-24 T 13-10-2018 IPR025916 Cold-inducible protein YdjO BMD_2656 02d7e96192433194ed083413b04a0935 239 Gene3D G3DSA:3.30.2170.10 2 239 3.4E-74 T 13-10-2018 BMD_2656 02d7e96192433194ed083413b04a0935 239 Pfam PF04493 Endonuclease V 23 223 2.7E-56 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 BMD_2656 02d7e96192433194ed083413b04a0935 239 Hamap MF_00801 Endonuclease V [nfi]. 13 233 30.062 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 BMD_4298 289e0f9604818a4dc3dc42220b19bd32 166 PRINTS PR00162 Rieske 2Fe-2S subunit signature 118 130 4.9E-6 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BMD_4298 289e0f9604818a4dc3dc42220b19bd32 166 PRINTS PR00162 Rieske 2Fe-2S subunit signature 94 105 4.9E-6 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BMD_4298 289e0f9604818a4dc3dc42220b19bd32 166 PRINTS PR00162 Rieske 2Fe-2S subunit signature 130 142 4.9E-6 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 BMD_4298 289e0f9604818a4dc3dc42220b19bd32 166 SUPERFAMILY SSF50022 3 157 1.96E-30 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_4298 289e0f9604818a4dc3dc42220b19bd32 166 Pfam PF00355 Rieske [2Fe-2S] domain 48 146 6.3E-14 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BMD_4298 289e0f9604818a4dc3dc42220b19bd32 166 Pfam PF08802 Cytochrome B6-F complex Fe-S subunit 6 35 1.8E-6 T 13-10-2018 IPR014909 Cytochrome b6-f complex Fe-S subunit GO:0009496|GO:0042651|GO:0051537|GO:0055114 KEGG: 00195+1.10.9.1|MetaCyc: PWY-101 BMD_4298 289e0f9604818a4dc3dc42220b19bd32 166 Gene3D G3DSA:2.102.10.10 37 163 2.3E-23 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BMD_0577 977577ba61bdf4702665593303df3bb5 61 Pfam PF14120 YhzD-like protein 1 61 1.6E-29 T 13-10-2018 IPR025544 YhzD-like protein BMD_2202 796440be621222ec03ecf0508fee63af 40 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 6 28 6.5E-12 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_2202 796440be621222ec03ecf0508fee63af 40 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 7 30 1.5E-12 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3312 ed7577093fb6e8a1df1629a253ec21d0 112 SUPERFAMILY SSF57783 1 36 1.02E-14 T 13-10-2018 BMD_3312 ed7577093fb6e8a1df1629a253ec21d0 112 Pfam PF03831 PhnA domain 45 112 2.2E-34 T 13-10-2018 IPR013988 PhnA protein, C-terminal BMD_3312 ed7577093fb6e8a1df1629a253ec21d0 112 Gene3D G3DSA:2.20.25.10 1 41 5.8E-19 T 13-10-2018 BMD_3312 ed7577093fb6e8a1df1629a253ec21d0 112 SUPERFAMILY SSF82057 40 112 1.01E-29 T 13-10-2018 BMD_3312 ed7577093fb6e8a1df1629a253ec21d0 112 Pfam PF08274 PhnA Zinc-Ribbon 4 30 2.1E-14 T 13-10-2018 IPR013987 PhnA protein, N-terminal BMD_3312 ed7577093fb6e8a1df1629a253ec21d0 112 Gene3D G3DSA:2.30.30.40 43 112 4.8E-35 T 13-10-2018 BMD_3312 ed7577093fb6e8a1df1629a253ec21d0 112 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 3 112 7.8E-53 T 13-10-2018 IPR004624 PhnA protein BMD_0553 98f81ab22c23eb772df30fd9e47cfaab 67 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 4 67 7.0E-18 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis BMD_0553 98f81ab22c23eb772df30fd9e47cfaab 67 Gene3D G3DSA:3.10.20.30 1 67 7.7E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_0553 98f81ab22c23eb772df30fd9e47cfaab 67 SUPERFAMILY SSF54285 3 66 3.6E-16 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BMD_0553 98f81ab22c23eb772df30fd9e47cfaab 67 Pfam PF02597 ThiS family 14 67 2.9E-10 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 BMD_1162 0b010f98e42246994420ab9c0d459d07 272 Pfam PF04474 Protein of unknown function (DUF554) 37 264 2.0E-72 T 13-10-2018 IPR007563 Protein of unknown function DUF554 BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 SMART SM00490 254 335 3.5E-34 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 Pfam PF00271 Helicase conserved C-terminal domain 227 335 2.9E-29 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 Pfam PF00270 DEAD/DEAH box helicase 26 191 3.9E-47 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 149 157 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 SUPERFAMILY SSF52540 71 356 3.19E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 Gene3D G3DSA:3.40.50.300 1 214 2.2E-73 T 13-10-2018 BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 SMART SM00487 21 218 1.2E-58 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_2792 b33e6640884f717cd268065b6d1ada9a 466 Gene3D G3DSA:3.40.50.300 215 444 4.0E-51 T 13-10-2018 BMD_5029 b83c8345647f09b926a81aea413517a9 218 SUPERFAMILY SSF161098 4 216 2.22E-49 T 13-10-2018 IPR035906 MetI-like superfamily BMD_5029 b83c8345647f09b926a81aea413517a9 218 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 11 216 2.6E-71 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 BMD_5029 b83c8345647f09b926a81aea413517a9 218 Gene3D G3DSA:1.10.3720.10 1 218 2.5E-53 T 13-10-2018 IPR035906 MetI-like superfamily BMD_5029 b83c8345647f09b926a81aea413517a9 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 214 3.0E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1363 9bc6a05c2ee2c03d6e5ea286c835b573 288 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 220 274 3.6E-23 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_1363 9bc6a05c2ee2c03d6e5ea286c835b573 288 Gene3D G3DSA:3.30.70.120 192 267 2.1E-27 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_1363 9bc6a05c2ee2c03d6e5ea286c835b573 288 PIRSF PIRSF006483 2 282 1.8E-96 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_1363 9bc6a05c2ee2c03d6e5ea286c835b573 288 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 8 215 3.8E-66 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 Gene3D G3DSA:3.40.50.12740 3 224 5.5E-71 T 13-10-2018 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 SUPERFAMILY SSF46894 150 225 1.77E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 163 218 2.1E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 SMART SM00421 161 218 1.7E-28 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 SUPERFAMILY SSF52172 2 133 1.07E-34 T 13-10-2018 IPR011006 CheY-like superfamily BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 ProSitePatterns PS00622 LuxR-type HTH domain signature. 178 205 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 Pfam PF00072 Response regulator receiver domain 5 117 6.9E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 178 1.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 194 1.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 206 1.4E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BMD_5108 e3ac92c874e8269b5297ebf807aa5111 227 SMART SM00448 3 116 2.8E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0859 335d303f342ea4693be30366b3df1c5e 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 276 1.1E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0859 335d303f342ea4693be30366b3df1c5e 281 Gene3D G3DSA:1.10.3720.10 86 280 1.1E-35 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0859 335d303f342ea4693be30366b3df1c5e 281 SUPERFAMILY SSF161098 86 270 5.1E-39 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3843 c40f8682c6e5a85fdccd4bb429a90a40 128 SMART SM00422 3 72 4.9E-22 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3843 c40f8682c6e5a85fdccd4bb429a90a40 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 3.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3843 c40f8682c6e5a85fdccd4bb429a90a40 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 3.5E-5 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3843 c40f8682c6e5a85fdccd4bb429a90a40 128 Gene3D G3DSA:1.10.1660.10 1 127 5.5E-34 T 13-10-2018 BMD_3843 c40f8682c6e5a85fdccd4bb429a90a40 128 Pfam PF13411 MerR HTH family regulatory protein 3 69 6.8E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3843 c40f8682c6e5a85fdccd4bb429a90a40 128 SUPERFAMILY SSF46955 3 116 1.32E-31 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_1488 275015e792afb73622ad61c37d36f44c 367 SUPERFAMILY SSF53383 10 363 1.81E-36 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1488 275015e792afb73622ad61c37d36f44c 367 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 6 364 2.6E-164 T 13-10-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 BMD_1488 275015e792afb73622ad61c37d36f44c 367 Pfam PF03841 L-seryl-tRNA selenium transferase 56 278 1.1E-13 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 BMD_1488 275015e792afb73622ad61c37d36f44c 367 Gene3D G3DSA:3.40.640.10 24 277 4.5E-50 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_2391 213fc6fa0001630a3ddc7c19ca4fe27b 84 TIGRFAM TIGR01446 DnaD_dom: DnaD domain protein 23 79 3.0E-17 T 13-10-2018 IPR006343 DnaD domain BMD_2391 213fc6fa0001630a3ddc7c19ca4fe27b 84 Gene3D G3DSA:1.10.10.630 19 84 1.5E-14 T 13-10-2018 IPR034829 DnaD-like domain superfamily BMD_2391 213fc6fa0001630a3ddc7c19ca4fe27b 84 Pfam PF07261 Replication initiation and membrane attachment 23 80 2.0E-12 T 13-10-2018 IPR006343 DnaD domain BMD_2391 213fc6fa0001630a3ddc7c19ca4fe27b 84 SUPERFAMILY SSF158499 21 79 6.67E-14 T 13-10-2018 IPR034829 DnaD-like domain superfamily BMD_3097 bc8a6bcd5ca476b619ad4664a46be4e1 140 Gene3D G3DSA:1.10.1660.10 7 139 1.2E-12 T 13-10-2018 BMD_3097 bc8a6bcd5ca476b619ad4664a46be4e1 140 SMART SM00422 4 77 9.1E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3097 bc8a6bcd5ca476b619ad4664a46be4e1 140 Pfam PF13411 MerR HTH family regulatory protein 19 76 7.6E-9 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3097 bc8a6bcd5ca476b619ad4664a46be4e1 140 SUPERFAMILY SSF46955 18 101 2.24E-12 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_3665 8f54cb201017cd861f63a76bc19b8329 454 Gene3D G3DSA:2.30.170.30 1 54 4.5E-23 T 13-10-2018 BMD_3665 8f54cb201017cd861f63a76bc19b8329 454 Gene3D G3DSA:3.20.20.70 142 454 7.7E-145 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3665 8f54cb201017cd861f63a76bc19b8329 454 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 443 2.5E-206 T 13-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 BMD_3665 8f54cb201017cd861f63a76bc19b8329 454 Gene3D G3DSA:1.10.220.70 55 141 6.4E-34 T 13-10-2018 BMD_3665 8f54cb201017cd861f63a76bc19b8329 454 PIRSF PIRSF018788 1 454 3.7E-217 T 13-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 BMD_4639 5d73137f6053d70f8060670a279e96d4 378 Gene3D G3DSA:3.40.640.10 59 233 3.2E-123 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4639 5d73137f6053d70f8060670a279e96d4 378 Gene3D G3DSA:3.90.1150.10 2 367 3.2E-123 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4639 5d73137f6053d70f8060670a279e96d4 378 PIRSF PIRSF005572 1 376 2.0E-121 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BMD_4639 5d73137f6053d70f8060670a279e96d4 378 SUPERFAMILY SSF53383 1 368 3.32E-93 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4639 5d73137f6053d70f8060670a279e96d4 378 Gene3D G3DSA:1.10.260.50 13 276 3.2E-123 T 13-10-2018 BMD_4639 5d73137f6053d70f8060670a279e96d4 378 Pfam PF00266 Aminotransferase class-V 2 364 4.7E-78 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 Gene3D G3DSA:3.30.300.30 423 525 7.4E-32 T 13-10-2018 BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 Gene3D G3DSA:3.40.50.980 37 196 1.7E-117 T 13-10-2018 BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 Pfam PF13193 AMP-binding enzyme C-terminal domain 438 513 9.9E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 Pfam PF00501 AMP-binding enzyme 14 429 4.4E-107 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 ProSitePatterns PS00455 Putative AMP-binding domain signature. 180 191 - T 13-10-2018 IPR020845 AMP-binding, conserved site BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 SUPERFAMILY SSF56801 5 523 1.1E-150 T 13-10-2018 BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 Gene3D G3DSA:2.30.38.10 345 422 1.7E-117 T 13-10-2018 BMD_4910 5c5499baaaae0d6238d1996b7c96061e 528 Gene3D G3DSA:3.40.50.980 34 344 1.7E-117 T 13-10-2018 BMD_2960 8a380e698fd3e3c46b94f9c89a6d345c 141 Pfam PF00011 Hsp20/alpha crystallin family 60 138 2.0E-12 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain BMD_2960 8a380e698fd3e3c46b94f9c89a6d345c 141 SUPERFAMILY SSF49764 46 138 1.73E-20 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_2960 8a380e698fd3e3c46b94f9c89a6d345c 141 Gene3D G3DSA:2.60.40.790 11 140 2.1E-20 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_0391 cb9ac87e79b275b687ff9aaf553ba772 450 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_0391 cb9ac87e79b275b687ff9aaf553ba772 450 Gene3D G3DSA:1.20.1740.10 5 449 1.6E-62 T 13-10-2018 BMD_0391 cb9ac87e79b275b687ff9aaf553ba772 450 Pfam PF00324 Amino acid permease 14 448 2.5E-102 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_0391 cb9ac87e79b275b687ff9aaf553ba772 450 PIRSF PIRSF006060 1 449 8.7E-66 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1880 7c2617b6567dae0aa27848bc953c0887 133 Pfam PF11553 Protein of unknown function (DUF3231) 14 129 4.8E-23 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2502 0e9b3460df113572476706b406bf5fa1 357 PIRSF PIRSF006468 1 357 3.0E-134 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 BMD_2502 0e9b3460df113572476706b406bf5fa1 357 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 44 356 6.5E-126 T 13-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 BMD_2502 0e9b3460df113572476706b406bf5fa1 357 ProSitePatterns PS00770 Aminotransferases class-IV signature. 233 262 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 BMD_2502 0e9b3460df113572476706b406bf5fa1 357 Gene3D G3DSA:3.30.470.10 25 352 3.7E-138 T 13-10-2018 BMD_2502 0e9b3460df113572476706b406bf5fa1 357 Gene3D G3DSA:3.20.10.10 171 339 3.7E-138 T 13-10-2018 BMD_2502 0e9b3460df113572476706b406bf5fa1 357 Pfam PF01063 Amino-transferase class IV 70 312 2.2E-34 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 BMD_2502 0e9b3460df113572476706b406bf5fa1 357 SUPERFAMILY SSF56752 7 353 1.44E-116 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 BMD_4679 2dd43c9dd24f23c950c43ccb8a621656 333 SUPERFAMILY SSF116965 78 298 6.67E-14 T 13-10-2018 BMD_4679 2dd43c9dd24f23c950c43ccb8a621656 333 Pfam PF14559 Tetratricopeptide repeat 27 89 1.9E-10 T 13-10-2018 BMD_4679 2dd43c9dd24f23c950c43ccb8a621656 333 Gene3D G3DSA:1.25.40.10 15 98 1.7E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_4679 2dd43c9dd24f23c950c43ccb8a621656 333 SUPERFAMILY SSF48452 13 109 2.66E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_0417 d6813819f34c62f1dacddfde010187a0 144 Gene3D G3DSA:3.30.1490.190 87 144 2.9E-23 T 13-10-2018 BMD_0417 d6813819f34c62f1dacddfde010187a0 144 Pfam PF01475 Ferric uptake regulator family 15 132 1.8E-39 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BMD_0417 d6813819f34c62f1dacddfde010187a0 144 SUPERFAMILY SSF46785 7 137 3.2E-41 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0417 d6813819f34c62f1dacddfde010187a0 144 Gene3D G3DSA:1.10.10.10 1 86 8.2E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 Pfam PF01514 Secretory protein of YscJ/FliF family 32 220 2.5E-56 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 Pfam PF08345 Flagellar M-ring protein C-terminal 257 430 2.5E-24 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 PIRSF PIRSF004862 1 530 1.4E-112 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 Gene3D G3DSA:3.30.300.30 132 220 2.2E-8 T 13-10-2018 BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 1 530 2.7E-127 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 PRINTS PR01009 Flagellar M-ring protein signature 154 168 1.4E-23 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 PRINTS PR01009 Flagellar M-ring protein signature 348 372 1.4E-23 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 PRINTS PR01009 Flagellar M-ring protein signature 198 216 1.4E-23 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 PRINTS PR01009 Flagellar M-ring protein signature 270 288 1.4E-23 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BMD_4180 23b3ab99c4dea010c0171df5e4513455 530 PRINTS PR01009 Flagellar M-ring protein signature 122 140 1.4E-23 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 BMD_4486 50b7cc6116dac96a3cc203299e25a070 300 Pfam PF00246 Zinc carboxypeptidase 20 235 4.0E-27 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 BMD_4486 50b7cc6116dac96a3cc203299e25a070 300 Gene3D G3DSA:3.40.630.10 7 299 1.2E-49 T 13-10-2018 BMD_4486 50b7cc6116dac96a3cc203299e25a070 300 SMART SM00631 10 296 7.0E-15 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 BMD_4486 50b7cc6116dac96a3cc203299e25a070 300 SUPERFAMILY SSF53187 5 298 2.91E-52 T 13-10-2018 BMD_3205 2abfdbd6b5b6cac8631cbb5619e6b45d 235 Pfam PF04239 Protein of unknown function (DUF421) 88 204 3.2E-29 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_3205 2abfdbd6b5b6cac8631cbb5619e6b45d 235 Gene3D G3DSA:3.30.240.20 169 229 3.0E-14 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_3205 2abfdbd6b5b6cac8631cbb5619e6b45d 235 Gene3D G3DSA:3.30.240.20 80 154 5.5E-25 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_4000 94766e0fafa729719ea3f8e795f47120 272 Hamap MF_01811 Membrane protein insertase YidC [yidC]. 4 246 31.091 T 13-10-2018 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes GO:0016021|GO:0032977 BMD_4000 94766e0fafa729719ea3f8e795f47120 272 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 60 242 7.2E-63 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4000 94766e0fafa729719ea3f8e795f47120 272 Pfam PF02096 60Kd inner membrane protein 61 243 1.2E-58 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_4000 94766e0fafa729719ea3f8e795f47120 272 PRINTS PR00701 60kDa inner membrane protein signature 172 194 1.4E-23 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_4000 94766e0fafa729719ea3f8e795f47120 272 PRINTS PR00701 60kDa inner membrane protein signature 209 232 1.4E-23 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_4000 94766e0fafa729719ea3f8e795f47120 272 PRINTS PR00701 60kDa inner membrane protein signature 127 150 1.4E-23 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_3252 196590ec8a8544347f7722057d0ed221 86 Pfam PF12652 CotJB protein 12 85 6.9E-30 T 13-10-2018 IPR024207 Spore coat assembly protein CotJB, domain BMD_3252 196590ec8a8544347f7722057d0ed221 86 PIRSF PIRSF010606 1 86 8.8E-39 T 13-10-2018 IPR016571 Spore coat assembly protein CotJB BMD_0461 ee08925eb1090123166cce4f3da7f216 192 PIRSF PIRSF016897 5 192 9.8E-64 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 BMD_0461 ee08925eb1090123166cce4f3da7f216 192 Pfam PF04309 Glycerol-3-phosphate responsive antiterminator 17 188 6.2E-62 T 13-10-2018 IPR006699 Glycerol uptake operon antiterminator GO:0006071|GO:0006355 BMD_0461 ee08925eb1090123166cce4f3da7f216 192 SUPERFAMILY SSF110391 16 189 1.57E-55 T 13-10-2018 IPR035928 GlpP-like superfamily BMD_0461 ee08925eb1090123166cce4f3da7f216 192 Gene3D G3DSA:3.20.20.400 7 192 1.2E-66 T 13-10-2018 IPR035928 GlpP-like superfamily BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 SUPERFAMILY SSF56645 1 242 6.68E-80 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 3.5E-37 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 SUPERFAMILY SSF47203 229 377 5.68E-62 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 1.9E-56 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 PIRSF PIRSF016578 3 377 7.9E-29 T 13-10-2018 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 Gene3D G3DSA:2.40.110.10 121 234 9.2E-36 T 13-10-2018 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 Gene3D G3DSA:1.10.540.10 1 119 2.4E-45 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 4.7E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_4527 3802d699143fa1570fe47c7f308b4a42 379 Gene3D G3DSA:1.20.140.10 235 379 6.9E-60 T 13-10-2018 BMD_4145 1e86d44cd888f52cc63d8734add61010 395 Pfam PF02163 Peptidase family M50 11 381 2.8E-63 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 BMD_4145 1e86d44cd888f52cc63d8734add61010 395 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 13 394 6.8E-95 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 BMD_4145 1e86d44cd888f52cc63d8734add61010 395 Pfam PF13180 PDZ domain 182 241 2.9E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_4145 1e86d44cd888f52cc63d8734add61010 395 SMART SM00228 165 234 2.2E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_4145 1e86d44cd888f52cc63d8734add61010 395 SUPERFAMILY SSF50156 149 243 1.01E-18 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 BMD_4145 1e86d44cd888f52cc63d8734add61010 395 Gene3D G3DSA:2.30.42.10 176 264 6.0E-21 T 13-10-2018 BMD_2751 d0e0c1b9f3c7ff367e06af6bb6729e28 101 Pfam PF05656 Protein of unknown function (DUF805) 12 89 1.1E-24 T 13-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 BMD_0563 a1444fa9aef2e9798245368cc3420401 369 SMART SM00382 29 218 1.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0563 a1444fa9aef2e9798245368cc3420401 369 Gene3D G3DSA:2.40.50.100 240 362 3.5E-31 T 13-10-2018 BMD_0563 a1444fa9aef2e9798245368cc3420401 369 Gene3D G3DSA:3.40.50.300 1 239 5.6E-75 T 13-10-2018 BMD_0563 a1444fa9aef2e9798245368cc3420401 369 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0563 a1444fa9aef2e9798245368cc3420401 369 Pfam PF08402 TOBE domain 281 356 1.6E-4 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BMD_0563 a1444fa9aef2e9798245368cc3420401 369 SUPERFAMILY SSF50331 237 365 3.16E-27 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BMD_0563 a1444fa9aef2e9798245368cc3420401 369 SUPERFAMILY SSF52540 4 243 6.3E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0563 a1444fa9aef2e9798245368cc3420401 369 Pfam PF00005 ABC transporter 21 162 1.3E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0563 a1444fa9aef2e9798245368cc3420401 369 Gene3D G3DSA:2.40.50.140 303 348 3.5E-31 T 13-10-2018 BMD_1656 454bad09571c3c56152fd087ddc63233 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 52 4.3E-13 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_1656 454bad09571c3c56152fd087ddc63233 335 Gene3D G3DSA:3.40.50.2300 63 152 6.8E-18 T 13-10-2018 BMD_1656 454bad09571c3c56152fd087ddc63233 335 Pfam PF13377 Periplasmic binding protein-like domain 172 329 2.5E-32 T 13-10-2018 BMD_1656 454bad09571c3c56152fd087ddc63233 335 SUPERFAMILY SSF47413 5 64 1.13E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_1656 454bad09571c3c56152fd087ddc63233 335 SMART SM00354 5 75 6.1E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_1656 454bad09571c3c56152fd087ddc63233 335 Gene3D G3DSA:1.10.260.40 5 62 1.9E-20 T 13-10-2018 BMD_1656 454bad09571c3c56152fd087ddc63233 335 Gene3D G3DSA:3.40.50.2300 156 331 1.9E-50 T 13-10-2018 BMD_1656 454bad09571c3c56152fd087ddc63233 335 SUPERFAMILY SSF53822 65 330 1.19E-66 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_3218 a8153aee3aef67af613eccf6c1718172 315 Gene3D G3DSA:1.10.3470.10 4 314 2.1E-55 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_3218 a8153aee3aef67af613eccf6c1718172 315 Pfam PF01032 FecCD transport family 30 310 1.2E-52 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_3218 a8153aee3aef67af613eccf6c1718172 315 SUPERFAMILY SSF81345 8 310 1.96E-55 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_4209 823b9a22d6d508f800190267deb51dcd 314 PIRSF PIRSF000446 1 311 1.3E-120 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BMD_4209 823b9a22d6d508f800190267deb51dcd 314 Pfam PF00698 Acyl transferase domain 6 288 5.8E-49 T 13-10-2018 IPR014043 Acyl transferase BMD_4209 823b9a22d6d508f800190267deb51dcd 314 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 1.1E-117 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BMD_4209 823b9a22d6d508f800190267deb51dcd 314 Gene3D G3DSA:3.40.366.10 5 286 3.4E-101 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 BMD_4209 823b9a22d6d508f800190267deb51dcd 314 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 314 7.8E-55 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain BMD_4209 823b9a22d6d508f800190267deb51dcd 314 SUPERFAMILY SSF52151 4 309 1.28E-81 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BMD_4209 823b9a22d6d508f800190267deb51dcd 314 Gene3D G3DSA:3.30.70.250 124 197 3.4E-101 T 13-10-2018 BMD_4209 823b9a22d6d508f800190267deb51dcd 314 SUPERFAMILY SSF55048 129 193 6.02E-16 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BMD_4236 bb103d1843f2e541121b93cd46230a01 212 Gene3D G3DSA:3.40.50.2020 1 211 1.1E-64 T 13-10-2018 BMD_4236 bb103d1843f2e541121b93cd46230a01 212 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 12 179 7.8E-52 T 13-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_4236 bb103d1843f2e541121b93cd46230a01 212 Pfam PF00156 Phosphoribosyl transferase domain 47 158 1.8E-21 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_4236 bb103d1843f2e541121b93cd46230a01 212 SUPERFAMILY SSF53271 11 208 4.59E-53 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_4236 bb103d1843f2e541121b93cd46230a01 212 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 212 30.339 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 Gene3D G3DSA:3.90.180.10 21 330 3.7E-121 T 13-10-2018 BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 Gene3D G3DSA:3.40.50.720 130 299 3.7E-121 T 13-10-2018 BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 90 2.2E-5 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 SUPERFAMILY SSF50129 7 146 7.0E-41 T 13-10-2018 IPR011032 GroES-like superfamily BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 SUPERFAMILY SSF51735 121 292 5.27E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 Pfam PF00107 Zinc-binding dehydrogenase 163 276 1.2E-15 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 SMART SM00829 14 329 1.8E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_0543 a00fbe627c3d37a5e40ac3bf8c8e8253 331 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 7 331 6.3E-141 T 13-10-2018 IPR014188 Acrylyl-CoA reductase AcuI BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 Pfam PF00905 Penicillin binding protein transpeptidase domain 321 575 2.9E-35 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 SUPERFAMILY SSF56601 207 595 4.54E-103 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 SUPERFAMILY SSF53955 41 248 3.37E-76 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 Pfam PF00912 Transglycosylase 55 226 3.6E-65 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 Gene3D G3DSA:3.40.710.10 291 595 2.2E-191 T 13-10-2018 BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 Gene3D G3DSA:1.10.3810.10 61 248 2.2E-191 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 Gene3D G3DSA:3.90.1310.20 45 503 2.2E-191 T 13-10-2018 BMD_3000 4b1d155a577035c8606b5aa92b4a4a16 596 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 62 595 6.1E-180 T 13-10-2018 BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 1.9E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 SUPERFAMILY SSF46785 1 110 5.96E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.2E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.2E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.2E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 SUPERFAMILY SSF53850 90 290 2.41E-45 T 13-10-2018 BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 Gene3D G3DSA:3.40.190.290 90 291 9.3E-58 T 13-10-2018 BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 Pfam PF03466 LysR substrate binding domain 89 289 2.9E-50 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1287 fab114d8a9df019fc7f1a67a02fa7134 291 Gene3D G3DSA:1.10.10.10 1 82 5.9E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4567 d24a2ffa187ba4412df2ea5cd433b63a 201 SMART SM00471 25 152 5.7E-11 T 13-10-2018 IPR003607 HD/PDEase domain BMD_4567 d24a2ffa187ba4412df2ea5cd433b63a 201 TIGRFAM TIGR00488 TIGR00488: putative HD superfamily hydrolase 21 191 4.2E-69 T 13-10-2018 IPR005249 Conserved hypothetical protein CHP00488 BMD_4567 d24a2ffa187ba4412df2ea5cd433b63a 201 Gene3D G3DSA:1.10.3210.10 5 195 1.1E-60 T 13-10-2018 BMD_4567 d24a2ffa187ba4412df2ea5cd433b63a 201 Pfam PF01966 HD domain 29 141 1.7E-16 T 13-10-2018 IPR006674 HD domain BMD_4567 d24a2ffa187ba4412df2ea5cd433b63a 201 SUPERFAMILY SSF109604 16 191 2.46E-36 T 13-10-2018 BMD_0285 6ee3dd54d19d59f311de768718b3c16a 101 SUPERFAMILY SSF48295 3 95 1.26E-33 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BMD_0285 6ee3dd54d19d59f311de768718b3c16a 101 Gene3D G3DSA:1.10.1270.10 2 101 5.4E-41 T 13-10-2018 IPR038116 TrpR-like superfamily BMD_0285 6ee3dd54d19d59f311de768718b3c16a 101 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 7 94 4.4E-51 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD BMD_0285 6ee3dd54d19d59f311de768718b3c16a 101 PIRSF PIRSF012508 1 100 5.1E-50 T 13-10-2018 IPR013368 TrpR homologue YerC/YecD BMD_0285 6ee3dd54d19d59f311de768718b3c16a 101 Pfam PF01371 Trp repressor protein 10 94 4.2E-36 T 13-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 BMD_4544 2d871b52418f9c7c8cae669702b9d727 443 Pfam PF01957 NfeD-like C-terminal, partner-binding 285 432 3.0E-16 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain BMD_4544 2d871b52418f9c7c8cae669702b9d727 443 Gene3D G3DSA:3.90.226.10 22 231 1.4E-49 T 13-10-2018 BMD_4544 2d871b52418f9c7c8cae669702b9d727 443 Pfam PF01972 Serine dehydrogenase proteinase 48 121 1.7E-9 T 13-10-2018 IPR002825 Peptidase S49, serine-peptidase prokaryotes GO:0016021 BMD_4544 2d871b52418f9c7c8cae669702b9d727 443 SUPERFAMILY SSF52096 8 167 1.3E-24 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4544 2d871b52418f9c7c8cae669702b9d727 443 Gene3D G3DSA:2.40.50.140 372 441 6.9E-7 T 13-10-2018 BMD_4832 32442e5b44479b096906b60244d81955 59 Pfam PF10957 Sporulation protein Cse60 2 59 1.1E-26 T 13-10-2018 IPR020296 Sporulation protein Cse60 BMD_4832 32442e5b44479b096906b60244d81955 59 ProDom PD052690 CSE60 CYTOSOLIC YTEV LJ928 SPORULATION ORF85 PROPHAGE 1 58 4.0E-14 T 13-10-2018 IPR020296 Sporulation protein Cse60 BMD_0061 624c6d3a379c9b7aacb16dc521b7233e 77 Pfam PF06257 Biofilm formation stimulator VEG 4 75 2.2E-31 T 13-10-2018 IPR009366 Protein Veg GO:0006355 BMD_0061 624c6d3a379c9b7aacb16dc521b7233e 77 Gene3D G3DSA:2.30.30.100 1 77 2.0E-27 T 13-10-2018 BMD_0061 624c6d3a379c9b7aacb16dc521b7233e 77 PIRSF PIRSF037257 1 77 5.6E-36 T 13-10-2018 IPR009366 Protein Veg GO:0006355 BMD_2130 bffbe9770cab16f527e37d3ee1dfeb40 160 Gene3D G3DSA:3.40.630.30 1 159 2.6E-39 T 13-10-2018 BMD_2130 bffbe9770cab16f527e37d3ee1dfeb40 160 Pfam PF13302 Acetyltransferase (GNAT) domain 2 139 1.2E-29 T 13-10-2018 IPR000182 GNAT domain BMD_2130 bffbe9770cab16f527e37d3ee1dfeb40 160 SUPERFAMILY SSF55729 2 144 9.65E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3257 6ae3c73866ddbc22f995d2c2f4df3386 291 Gene3D G3DSA:3.30.565.10 161 277 2.4E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3257 6ae3c73866ddbc22f995d2c2f4df3386 291 Pfam PF07730 Histidine kinase 87 147 9.8E-11 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BMD_3257 6ae3c73866ddbc22f995d2c2f4df3386 291 SUPERFAMILY SSF55874 160 270 4.45E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 Gene3D G3DSA:1.20.1250.20 1 387 1.5E-70 T 13-10-2018 BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 PRINTS PR01035 Tetracycline resistance protein signature 18 34 1.3E-21 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 PRINTS PR01035 Tetracycline resistance protein signature 133 155 1.3E-21 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 PRINTS PR01035 Tetracycline resistance protein signature 247 267 1.3E-21 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 PRINTS PR01035 Tetracycline resistance protein signature 161 181 1.3E-21 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 PRINTS PR01035 Tetracycline resistance protein signature 335 358 1.3E-21 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 78 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 SUPERFAMILY SSF103473 1 387 1.96E-72 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3718 f70a1f1ec2d650ca00940fed6ca79208 399 Pfam PF07690 Major Facilitator Superfamily 12 345 3.6E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3937 95eef1f24d85602c48217d304a54cd5c 408 Pfam PF05684 Protein of unknown function (DUF819) 16 406 9.9E-99 T 13-10-2018 IPR008537 Protein of unknown function DUF819 BMD_3620 362bd82484a8e2894895bf7c5489db70 335 Pfam PF01261 Xylose isomerase-like TIM barrel 32 262 6.5E-28 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_3620 362bd82484a8e2894895bf7c5489db70 335 Pfam PF07582 AP endonuclease family 2 C terminus 282 335 3.5E-19 T 13-10-2018 IPR011418 AP endonuclease, family 2, C-terminal BMD_3620 362bd82484a8e2894895bf7c5489db70 335 Gene3D G3DSA:3.20.20.150 12 328 1.2E-69 T 13-10-2018 BMD_3620 362bd82484a8e2894895bf7c5489db70 335 SUPERFAMILY SSF51658 13 318 2.21E-50 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_1039 63796d842243de68a8b3576b50c5838d 116 Pfam PF13789 Domain of unknown function (DUF4181) 10 110 8.3E-17 T 13-10-2018 IPR025441 Protein of unknown function DUF4181 BMD_2268 acbeb9a6716a8c7f6bbf4108bec357ff 325 Gene3D G3DSA:3.10.180.10 66 217 8.0E-110 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2268 acbeb9a6716a8c7f6bbf4108bec357ff 325 SUPERFAMILY SSF54593 3 302 1.74E-46 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2268 acbeb9a6716a8c7f6bbf4108bec357ff 325 Gene3D G3DSA:3.10.180.10 5 309 8.0E-110 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2268 acbeb9a6716a8c7f6bbf4108bec357ff 325 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 161 264 2.4E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_2268 acbeb9a6716a8c7f6bbf4108bec357ff 325 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 109 8.2E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_1545 c68598ba370c50e223359b136e787c88 96 Gene3D G3DSA:3.30.70.100 1 96 3.4E-31 T 13-10-2018 BMD_1545 c68598ba370c50e223359b136e787c88 96 SUPERFAMILY SSF54909 1 92 1.58E-31 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_1545 c68598ba370c50e223359b136e787c88 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 4 78 7.8E-21 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BMD_3537 4ee3aa5ecd60a289fa41fbeef12d6013 243 Pfam PF02421 Ferrous iron transport protein B 5 159 3.0E-63 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 BMD_3537 4ee3aa5ecd60a289fa41fbeef12d6013 243 SUPERFAMILY SSF52540 4 178 5.41E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3537 4ee3aa5ecd60a289fa41fbeef12d6013 243 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 54 69 5.3E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_3537 4ee3aa5ecd60a289fa41fbeef12d6013 243 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 5.3E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 BMD_3537 4ee3aa5ecd60a289fa41fbeef12d6013 243 Gene3D G3DSA:3.40.50.300 3 196 2.1E-46 T 13-10-2018 BMD_4293 2a35f706be2564e27788f685046f49aa 78 Pfam PF14003 YlbE-like protein 13 73 5.2E-30 T 13-10-2018 IPR025613 YlbE-like protein BMD_0525 38ff1dbee52ce495a14920e98c5d0886 291 SUPERFAMILY SSF161111 6 206 2.75E-51 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_0525 38ff1dbee52ce495a14920e98c5d0886 291 Pfam PF16916 Dimerisation domain of Zinc Transporter 209 284 9.4E-18 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain BMD_0525 38ff1dbee52ce495a14920e98c5d0886 291 Gene3D G3DSA:3.30.70.1350 210 285 7.4E-16 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BMD_0525 38ff1dbee52ce495a14920e98c5d0886 291 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 9 285 6.3E-67 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_0525 38ff1dbee52ce495a14920e98c5d0886 291 Pfam PF01545 Cation efflux family 13 204 2.1E-45 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_0525 38ff1dbee52ce495a14920e98c5d0886 291 SUPERFAMILY SSF160240 208 284 2.88E-17 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BMD_0525 38ff1dbee52ce495a14920e98c5d0886 291 Gene3D G3DSA:1.20.1510.10 8 205 1.8E-51 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Gene3D G3DSA:1.10.730.10 351 521 2.5E-53 T 13-10-2018 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 SUPERFAMILY SSF47323 363 573 1.13E-47 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 17 26 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Gene3D G3DSA:2.40.50.140 550 660 4.1E-37 T 13-10-2018 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Gene3D G3DSA:3.40.50.620 8 344 1.3E-154 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 532 660 2.2E-47 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Pfam PF09334 tRNA synthetases class I (M) 8 373 9.7E-122 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 SUPERFAMILY SSF52374 4 364 8.73E-118 T 13-10-2018 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 PRINTS PR01041 Methionyl-tRNA synthetase signature 361 372 5.1E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 5.1E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 PRINTS PR01041 Methionyl-tRNA synthetase signature 236 247 5.1E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 5.1E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 PRINTS PR01041 Methionyl-tRNA synthetase signature 269 284 5.1E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 5.1E-34 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 524 2.9E-181 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 522 51.643 T 13-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Gene3D G3DSA:2.170.220.10 119 238 1.3E-154 T 13-10-2018 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 SUPERFAMILY SSF50249 559 659 4.16E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Pfam PF08264 Anticodon-binding domain of tRNA 403 536 5.2E-10 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BMD_0055 8d4b83b40a0b5e1dba3e74e30fc998cc 660 Pfam PF01588 Putative tRNA binding domain 566 658 1.5E-27 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 BMD_1769 126902a8522caaccf6cb7dc6c586e5ae 154 SUPERFAMILY SSF111064 19 154 1.44E-42 T 13-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily BMD_1769 126902a8522caaccf6cb7dc6c586e5ae 154 Pfam PF09021 HutP 14 152 1.3E-31 T 13-10-2018 IPR015111 Hut operon regulatory protein HutP BMD_1769 126902a8522caaccf6cb7dc6c586e5ae 154 Gene3D G3DSA:3.40.1510.10 5 154 1.6E-60 T 13-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 SUPERFAMILY SSF52540 606 822 4.03E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 Pfam PF00271 Helicase conserved C-terminal domain 901 1012 2.6E-23 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 Pfam PF00176 SNF2 family N-terminal domain 638 890 2.9E-54 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 SMART SM00490 930 1012 1.1E-27 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 SMART SM00487 619 803 1.5E-26 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 SUPERFAMILY SSF52540 824 1067 4.06E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 Pfam PF08455 Bacterial SNF2 helicase associated 241 616 2.2E-93 T 13-10-2018 IPR013663 Helicase, SWF/SNF/SWI type, bacterial BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 Gene3D G3DSA:1.20.120.850 844 1062 4.0E-88 T 13-10-2018 BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 Gene3D G3DSA:3.40.50.10810 593 829 3.2E-60 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily BMD_2486 25656466f602926a1dc911bf3b1401a0 1068 Gene3D G3DSA:3.40.50.300 830 1026 4.0E-88 T 13-10-2018 BMD_2232 c8310e7475b50940f6cc5b8bd0a4736d 149 Pfam PF01047 MarR family 39 96 1.0E-15 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2232 c8310e7475b50940f6cc5b8bd0a4736d 149 Gene3D G3DSA:1.10.10.10 1 146 3.5E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2232 c8310e7475b50940f6cc5b8bd0a4736d 149 SUPERFAMILY SSF46785 9 140 7.72E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2232 c8310e7475b50940f6cc5b8bd0a4736d 149 SMART SM00347 31 131 9.0E-22 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2232 c8310e7475b50940f6cc5b8bd0a4736d 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 4.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2232 c8310e7475b50940f6cc5b8bd0a4736d 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 4.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2232 c8310e7475b50940f6cc5b8bd0a4736d 149 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 4.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3347 54f8aaa1e79fbc992ec68594e035ca31 118 SUPERFAMILY SSF52821 7 118 2.75E-32 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3347 54f8aaa1e79fbc992ec68594e035ca31 118 Pfam PF00581 Rhodanese-like domain 31 117 1.7E-17 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_3347 54f8aaa1e79fbc992ec68594e035ca31 118 Gene3D G3DSA:3.40.250.10 23 118 4.1E-30 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3347 54f8aaa1e79fbc992ec68594e035ca31 118 SMART SM00450 28 118 7.4E-19 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_4083 56899546ef7c1ac3a6efdf7039500704 608 Pfam PF13520 Amino acid permease 26 446 1.0E-32 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_4083 56899546ef7c1ac3a6efdf7039500704 608 Gene3D G3DSA:1.20.1740.10 24 470 1.8E-26 T 13-10-2018 BMD_4879 9f62d5bf4eccaf4ef8fd49195d614ebe 250 SUPERFAMILY SSF57716 92 124 2.46E-6 T 13-10-2018 BMD_4879 9f62d5bf4eccaf4ef8fd49195d614ebe 250 SUPERFAMILY SSF109635 3 90 4.45E-12 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily BMD_4879 9f62d5bf4eccaf4ef8fd49195d614ebe 250 TIGRFAM TIGR02890 bacill_yteA: regulatory protein, yteA family 6 165 1.1E-60 T 13-10-2018 IPR014240 Regulatory protein, YteA family BMD_4879 9f62d5bf4eccaf4ef8fd49195d614ebe 250 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 91 118 1.2E-8 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 BMD_4879 9f62d5bf4eccaf4ef8fd49195d614ebe 250 Gene3D G3DSA:1.20.120.910 1 129 1.0E-28 T 13-10-2018 BMD_2975 851d286bad81a0f9176507eb6214ceea 319 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 255 268 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_2975 851d286bad81a0f9176507eb6214ceea 319 Pfam PF00294 pfkB family carbohydrate kinase 5 303 4.8E-63 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_2975 851d286bad81a0f9176507eb6214ceea 319 Gene3D G3DSA:3.40.1190.20 4 316 6.8E-91 T 13-10-2018 IPR029056 Ribokinase-like BMD_2975 851d286bad81a0f9176507eb6214ceea 319 SUPERFAMILY SSF53613 2 311 1.71E-84 T 13-10-2018 IPR029056 Ribokinase-like BMD_3383 e6732c96c4964b14075c774ff7826a3a 105 SUPERFAMILY SSF46785 7 103 2.34E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3383 e6732c96c4964b14075c774ff7826a3a 105 Gene3D G3DSA:1.10.10.10 5 105 1.8E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3383 e6732c96c4964b14075c774ff7826a3a 105 Pfam PF01638 HxlR-like helix-turn-helix 17 104 3.1E-30 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_1326 bce205fa580eb941af9be9847d289e5b 371 Pfam PF00676 Dehydrogenase E1 component 54 343 1.9E-104 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 BMD_1326 bce205fa580eb941af9be9847d289e5b 371 Gene3D G3DSA:3.40.50.970 5 371 8.9E-124 T 13-10-2018 BMD_1326 bce205fa580eb941af9be9847d289e5b 371 SUPERFAMILY SSF52518 10 366 1.58E-100 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_1326 bce205fa580eb941af9be9847d289e5b 371 TIGRFAM TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 25 364 9.1E-144 T 13-10-2018 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BMD_4536 dbe2d06d088dbc633de208a151f7ed83 91 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 39 50 - T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BMD_4536 dbe2d06d088dbc633de208a151f7ed83 91 Gene3D G3DSA:1.10.3830.10 1 90 1.4E-28 T 13-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BMD_4536 dbe2d06d088dbc633de208a151f7ed83 91 Pfam PF01219 Prokaryotic diacylglycerol kinase 1 86 3.4E-27 T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BMD_4279 ed26694d7f04d58ffb4b2501689198bc 200 Pfam PF13921 Myb-like DNA-binding domain 9 62 3.7E-5 T 13-10-2018 BMD_4279 ed26694d7f04d58ffb4b2501689198bc 200 SUPERFAMILY SSF46689 6 62 5.92E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_4279 ed26694d7f04d58ffb4b2501689198bc 200 TIGRFAM TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family 4 180 5.6E-58 T 13-10-2018 IPR014243 Transcription factor, RsfA BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 139 160 2.4E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 14 30 2.4E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 192 202 2.4E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 64 83 2.4E-29 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 19 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 Gene3D G3DSA:3.40.50.620 4 323 5.6E-141 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 SUPERFAMILY SSF52374 2 324 2.86E-100 T 13-10-2018 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 Gene3D G3DSA:1.10.240.10 183 293 5.6E-141 T 13-10-2018 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 1 325 42.504 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 Pfam PF00579 tRNA synthetases class I (W and Y) 3 280 3.0E-84 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 BMD_0705 6808dd9562ee2d1b9d7dc12f4249e40b 328 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 324 1.7E-123 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BMD_1163 81371574d4375c363245258925265114 124 Gene3D G3DSA:3.10.180.10 6 123 1.0E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1163 81371574d4375c363245258925265114 124 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 120 4.2E-6 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_1163 81371574d4375c363245258925265114 124 SUPERFAMILY SSF54593 8 123 2.06E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 SMART SM00448 1 113 3.5E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 SUPERFAMILY SSF52172 1 121 7.83E-37 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 222 1.3E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 SMART SM00862 146 222 2.8E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 Gene3D G3DSA:3.40.50.2300 1 122 1.6E-36 T 13-10-2018 BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 Gene3D G3DSA:1.10.10.10 123 224 1.9E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 Pfam PF00072 Response regulator receiver domain 3 113 4.6E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2009 5b7103eee9d3958c0ecffd579f98fc8b 224 SUPERFAMILY SSF46894 127 222 1.55E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_1411 59fba3ed2d1730d5f0508a6c757f4d9b 154 ProDom PD057197 SPORE COAT CAPSID D INNER D COTD SPORULATION 9 64 2.0E-12 T 13-10-2018 IPR020108 Spore coat protein CotD BMD_1411 59fba3ed2d1730d5f0508a6c757f4d9b 154 Pfam PF11122 Inner spore coat protein D 10 101 1.1E-23 T 13-10-2018 IPR020108 Spore coat protein CotD BMD_3574 31cb59f913632291ef57d1a2d8a6ecd8 259 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 88 256 7.2E-7 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BMD_3574 31cb59f913632291ef57d1a2d8a6ecd8 259 SUPERFAMILY SSF56529 4 258 4.43E-73 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_3574 31cb59f913632291ef57d1a2d8a6ecd8 259 Gene3D G3DSA:3.90.850.10 1 258 1.4E-79 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_3299 8ab63807edcdf79723a4cd8c15f5f2e5 88 Pfam PF05120 Gas vesicle protein G 2 77 2.9E-17 T 13-10-2018 IPR007804 Gas vesicle protein GvpG BMD_3320 d5115094bc1c9257b52da93572006c56 109 Pfam PF13237 4Fe-4S dicluster domain 6 53 1.4E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BMD_3320 d5115094bc1c9257b52da93572006c56 109 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 42 53 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_3320 d5115094bc1c9257b52da93572006c56 109 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_3320 d5115094bc1c9257b52da93572006c56 109 SUPERFAMILY SSF54862 6 71 4.27E-17 T 13-10-2018 BMD_3320 d5115094bc1c9257b52da93572006c56 109 Gene3D G3DSA:3.30.70.20 3 72 7.6E-14 T 13-10-2018 BMD_0157 b5600766d53af32e0bc74e7ea861ce75 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 28.211 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BMD_0157 b5600766d53af32e0bc74e7ea861ce75 72 SMART SM00316 4 72 3.1E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 BMD_0157 b5600766d53af32e0bc74e7ea861ce75 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 2.0E-39 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BMD_0157 b5600766d53af32e0bc74e7ea861ce75 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 6.7E-29 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 BMD_0157 b5600766d53af32e0bc74e7ea861ce75 72 Gene3D G3DSA:2.40.50.140 1 72 3.6E-38 T 13-10-2018 BMD_0157 b5600766d53af32e0bc74e7ea861ce75 72 SUPERFAMILY SSF50249 1 71 1.4E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0768 9f5bb9531de70a7d20404208fc015d3a 192 Gene3D G3DSA:1.10.357.10 51 186 1.2E-27 T 13-10-2018 BMD_0768 9f5bb9531de70a7d20404208fc015d3a 192 SUPERFAMILY SSF46689 8 72 4.72E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0768 9f5bb9531de70a7d20404208fc015d3a 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 1.4E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_0768 9f5bb9531de70a7d20404208fc015d3a 192 SUPERFAMILY SSF48498 78 185 1.91E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_0768 9f5bb9531de70a7d20404208fc015d3a 192 Gene3D G3DSA:1.10.10.60 1 50 3.1E-19 T 13-10-2018 BMD_0768 9f5bb9531de70a7d20404208fc015d3a 192 Pfam PF13305 WHG domain 87 162 4.8E-10 T 13-10-2018 IPR025996 WHG domain BMD_2156 dae692d97bfd491e78c6f2b3c8edfbe2 111 Gene3D G3DSA:1.10.260.40 2 111 1.2E-29 T 13-10-2018 BMD_2156 dae692d97bfd491e78c6f2b3c8edfbe2 111 Pfam PF08671 Anti-repressor SinI 75 102 9.3E-13 T 13-10-2018 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain GO:0006355|GO:0046983 BMD_2156 dae692d97bfd491e78c6f2b3c8edfbe2 111 SUPERFAMILY SSF47413 1 66 1.05E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_2156 dae692d97bfd491e78c6f2b3c8edfbe2 111 SMART SM00530 6 62 2.6E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_2156 dae692d97bfd491e78c6f2b3c8edfbe2 111 Pfam PF01381 Helix-turn-helix 7 62 4.5E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_2156 dae692d97bfd491e78c6f2b3c8edfbe2 111 SUPERFAMILY SSF47406 75 107 1.19E-10 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 SUPERFAMILY SSF53383 7 384 1.12E-98 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 Gene3D G3DSA:3.90.105.10 421 477 1.5E-18 T 13-10-2018 BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 Gene3D G3DSA:3.40.640.10 7 284 7.8E-96 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 Gene3D G3DSA:3.90.1150.10 313 405 1.5E-6 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 222 236 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 7 371 2.0E-115 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 379 460 4.4E-11 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 BMD_1333 1d5b5293e4a18a127e45dc1fc6292345 491 SUPERFAMILY SSF55904 342 488 1.02E-40 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 BMD_4232 83d42162b742cb890ae1d8ff5187d5e9 86 ProDom PD063023 UPF0296 YLZA BA4010/GBAA4010/BAS3723 BLI01788/BL02292 BT9727_3613 BC3870 TM1690 CBDBA43 SYC0519_C BCE33L3631 5 77 2.0E-28 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A BMD_4232 83d42162b742cb890ae1d8ff5187d5e9 86 Hamap MF_01503 UPF0296 protein . 3 85 27.426 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A BMD_4232 83d42162b742cb890ae1d8ff5187d5e9 86 Pfam PF04025 Domain of unknown function (DUF370) 5 77 1.7E-35 T 13-10-2018 IPR007169 Extracellular matrix regulatory protein A BMD_0551 87947bd3019d54ee031641c8ba879458 207 Gene3D G3DSA:3.20.20.70 5 199 2.2E-55 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0551 87947bd3019d54ee031641c8ba879458 207 SUPERFAMILY SSF51391 4 196 1.96E-46 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_0551 87947bd3019d54ee031641c8ba879458 207 Pfam PF02581 Thiamine monophosphate synthase 9 179 7.6E-42 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 13 67 5.8E-23 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 SUPERFAMILY SSF81333 3 68 1.57E-19 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily BMD_5139 26099481824b0ba870be159b0b5a16c5 70 Hamap MF_01396 ATP synthase subunit c [atpH]. 3 68 15.85 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 PRINTS PR00124 ATP synthase C subunit signature 5 24 2.8E-19 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 PRINTS PR00124 ATP synthase C subunit signature 43 68 2.8E-19 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 PRINTS PR00124 ATP synthase C subunit signature 26 41 2.8E-19 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 ProSitePatterns PS00605 ATP synthase c subunit signature. 33 54 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 Gene3D G3DSA:1.20.20.10 1 70 3.3E-27 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5139 26099481824b0ba870be159b0b5a16c5 70 Pfam PF00137 ATP synthase subunit C 4 66 2.1E-14 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 BMD_0305 c032937a62bf588e7be26a2e83bee4b1 354 Pfam PF10282 Lactonase, 7-bladed beta-propeller 10 350 8.4E-122 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller BMD_0305 c032937a62bf588e7be26a2e83bee4b1 354 Gene3D G3DSA:2.130.10.10 8 354 5.1E-116 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BMD_0305 c032937a62bf588e7be26a2e83bee4b1 354 SUPERFAMILY SSF51004 16 352 6.28E-50 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily BMD_3182 a3bd3f3ee655627f5b585bb00022ffa7 152 Gene3D G3DSA:3.20.80.10 1 150 4.4E-30 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_3182 a3bd3f3ee655627f5b585bb00022ffa7 152 Pfam PF14526 Integron-associated effector binding protein 5 148 7.7E-26 T 13-10-2018 IPR029441 Integron-associated effector binding protein BMD_3182 a3bd3f3ee655627f5b585bb00022ffa7 152 SMART SM00871 1 149 3.4E-19 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding BMD_3182 a3bd3f3ee655627f5b585bb00022ffa7 152 SUPERFAMILY SSF55136 3 149 1.92E-22 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BMD_5206 4700f271916d347ea6ceb4ddcca4da89 366 Gene3D G3DSA:3.40.50.2000 159 347 2.3E-60 T 13-10-2018 BMD_5206 4700f271916d347ea6ceb4ddcca4da89 366 Pfam PF13439 Glycosyltransferase Family 4 65 157 3.1E-7 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BMD_5206 4700f271916d347ea6ceb4ddcca4da89 366 Gene3D G3DSA:3.40.50.2000 21 357 2.3E-60 T 13-10-2018 BMD_5206 4700f271916d347ea6ceb4ddcca4da89 366 Pfam PF00534 Glycosyl transferases group 1 172 340 1.9E-29 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_5206 4700f271916d347ea6ceb4ddcca4da89 366 SUPERFAMILY SSF53756 1 358 5.58E-64 T 13-10-2018 BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 SUPERFAMILY SSF51735 3 247 8.0E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 2.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 2.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 2.9E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 244 4.9E-68 T 13-10-2018 BMD_0405 8a3b0a5916e4b518951c81569500f38f 249 Gene3D G3DSA:3.40.50.720 2 249 1.7E-79 T 13-10-2018 BMD_3169 be60beff390fc4e2261ce41872f9b3f9 207 Pfam PF01810 LysE type translocator 16 204 3.2E-36 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_3169 be60beff390fc4e2261ce41872f9b3f9 207 PIRSF PIRSF006324 1 207 2.5E-56 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_3859 5d68e507d92ff93da4bd2a745d44c293 636 PIRSF PIRSF018968 1 636 2.9E-116 T 13-10-2018 IPR027022 ABC transporter permease protein, BceB-type GO:0055085 BMD_3859 5d68e507d92ff93da4bd2a745d44c293 636 Pfam PF02687 FtsX-like permease family 85 170 2.6E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BMD_3416 b149849dd359a39b08c85a6ad4377565 420 Pfam PF00916 Sulfate permease family 14 378 1.9E-75 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BMD_2594 0ee8a45396a7bcd291cd08e5b8459282 179 PIRSF PIRSF015617 1 179 5.4E-67 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BMD_2594 0ee8a45396a7bcd291cd08e5b8459282 179 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 2 179 1.3E-53 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BMD_2594 0ee8a45396a7bcd291cd08e5b8459282 179 Gene3D G3DSA:3.40.50.300 1 179 7.8E-64 T 13-10-2018 BMD_2594 0ee8a45396a7bcd291cd08e5b8459282 179 SUPERFAMILY SSF52540 3 179 6.15E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2594 0ee8a45396a7bcd291cd08e5b8459282 179 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 5 179 6.6E-62 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BMD_4284 6e243e604e9ab08fb6df57a00a3b02ab 328 SUPERFAMILY SSF50156 117 204 6.84E-20 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 BMD_4284 6e243e604e9ab08fb6df57a00a3b02ab 328 SUPERFAMILY SSF54211 206 323 8.72E-20 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_4284 6e243e604e9ab08fb6df57a00a3b02ab 328 SMART SM00228 109 176 2.6E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_4284 6e243e604e9ab08fb6df57a00a3b02ab 328 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 221 319 8.4E-9 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 BMD_4284 6e243e604e9ab08fb6df57a00a3b02ab 328 Gene3D G3DSA:2.30.42.10 118 196 2.9E-28 T 13-10-2018 BMD_4284 6e243e604e9ab08fb6df57a00a3b02ab 328 Gene3D G3DSA:3.30.230.10 198 327 2.3E-15 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_4284 6e243e604e9ab08fb6df57a00a3b02ab 328 Pfam PF13180 PDZ domain 112 185 1.3E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 SMART SM00357 3 65 1.1E-27 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 SUPERFAMILY SSF50249 1 64 3.43E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 Gene3D G3DSA:2.40.50.140 1 65 1.1E-30 T 13-10-2018 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 2.0E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 PRINTS PR00050 Cold shock protein signature 39 57 5.6E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 PRINTS PR00050 Cold shock protein signature 4 19 5.6E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 PRINTS PR00050 Cold shock protein signature 24 33 5.6E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 PIRSF PIRSF002599 1 65 1.7E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_3204 5f740f8378d75b9207ac8acbed2f34fc 65 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_0576 46d0dd3b48d03411cc413546130cf390 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.7E-21 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_0576 46d0dd3b48d03411cc413546130cf390 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.7E-21 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_0576 46d0dd3b48d03411cc413546130cf390 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.7E-21 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_0576 46d0dd3b48d03411cc413546130cf390 90 SUPERFAMILY SSF47729 1 90 7.51E-35 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BMD_0576 46d0dd3b48d03411cc413546130cf390 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BMD_0576 46d0dd3b48d03411cc413546130cf390 90 Gene3D G3DSA:4.10.520.10 1 90 1.5E-40 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BMD_0576 46d0dd3b48d03411cc413546130cf390 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.1E-37 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_0576 46d0dd3b48d03411cc413546130cf390 90 SMART SM00411 1 90 4.3E-48 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_1343 2fb4cb44dc0c03b51f6dbbbbe870f900 60 Pfam PF09963 Uncharacterized protein conserved in bacteria (DUF2197) 1 50 1.5E-27 T 13-10-2018 IPR019241 Protein of unknown function DUF2197 BMD_5030 ff2935e66b35d8fa34822daf9285180c 155 Pfam PF01668 SmpB protein 9 150 3.9E-63 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 BMD_5030 ff2935e66b35d8fa34822daf9285180c 155 TIGRFAM TIGR00086 smpB: SsrA-binding protein 9 149 2.5E-59 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 BMD_5030 ff2935e66b35d8fa34822daf9285180c 155 SUPERFAMILY SSF74982 4 132 4.71E-54 T 13-10-2018 IPR023620 Small protein B BMD_5030 ff2935e66b35d8fa34822daf9285180c 155 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 9 114 3.0E-50 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 BMD_5030 ff2935e66b35d8fa34822daf9285180c 155 Gene3D G3DSA:2.40.280.10 3 129 9.4E-52 T 13-10-2018 IPR023620 Small protein B BMD_5030 ff2935e66b35d8fa34822daf9285180c 155 ProSitePatterns PS01317 SsrA-binding protein. 27 39 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site BMD_5030 ff2935e66b35d8fa34822daf9285180c 155 Hamap MF_00023 SsrA-binding protein [smpB]. 1 155 78.24 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 BMD_0051 5cbc74d8123dd33e2754ea9dfa43f569 248 SUPERFAMILY SSF53335 8 199 2.29E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0051 5cbc74d8123dd33e2754ea9dfa43f569 248 Pfam PF05175 Methyltransferase small domain 19 134 1.5E-11 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BMD_0051 5cbc74d8123dd33e2754ea9dfa43f569 248 Gene3D G3DSA:3.40.50.150 8 248 2.0E-70 T 13-10-2018 BMD_1547 d9b8caafac7f4def6aac61ef040d8720 282 SUPERFAMILY SSF56281 24 256 1.1E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_1547 d9b8caafac7f4def6aac61ef040d8720 282 SMART SM00849 39 250 2.7E-31 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1547 d9b8caafac7f4def6aac61ef040d8720 282 Pfam PF00753 Metallo-beta-lactamase superfamily 39 250 1.3E-32 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1547 d9b8caafac7f4def6aac61ef040d8720 282 Gene3D G3DSA:3.60.15.10 17 274 7.8E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 SUPERFAMILY SSF52540 332 579 5.07E-96 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 SUPERFAMILY SSF90123 6 325 7.46E-78 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 Gene3D G3DSA:3.40.50.300 332 582 1.7E-91 T 13-10-2018 BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 Gene3D G3DSA:1.20.1560.10 4 325 1.9E-109 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 Pfam PF00664 ABC transporter transmembrane region 24 294 4.8E-44 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 Pfam PF00005 ABC transporter 360 508 5.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 ProSitePatterns PS00211 ABC transporters family signature. 480 494 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0409 f80c3cf4435e1776071ff26e3fe69b77 583 SMART SM00382 368 554 7.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1145 debc5db8df8ec3a635655b1621331d0f 287 SUPERFAMILY SSF103481 35 138 1.83E-9 T 13-10-2018 BMD_1145 debc5db8df8ec3a635655b1621331d0f 287 Pfam PF06800 Sugar transport protein 4 282 1.6E-97 T 13-10-2018 IPR010651 Sugar transport protein GO:0015144|GO:0016021|GO:0034219 BMD_2790 6a58799c400019bc2333b3e239838a90 338 Pfam PF11553 Protein of unknown function (DUF3231) 173 333 5.6E-43 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2790 6a58799c400019bc2333b3e239838a90 338 Pfam PF11553 Protein of unknown function (DUF3231) 2 159 1.6E-45 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2790 6a58799c400019bc2333b3e239838a90 338 Gene3D G3DSA:1.20.1260.10 1 147 7.2E-12 T 13-10-2018 IPR012347 Ferritin-like BMD_3050 076f25f775c2a980482bfb316dc4f15e 295 Pfam PF01925 Sulfite exporter TauE/SafE 8 246 3.0E-39 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BMD_0284 a9cea6cea829ee4d354f2f9482512e23 582 Gene3D G3DSA:2.30.40.10 21 362 3.6E-78 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0284 a9cea6cea829ee4d354f2f9482512e23 582 Pfam PF13382 Adenine deaminase C-terminal domain 415 573 1.2E-36 T 13-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 BMD_0284 a9cea6cea829ee4d354f2f9482512e23 582 SUPERFAMILY SSF51338 21 370 2.65E-13 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0284 a9cea6cea829ee4d354f2f9482512e23 582 Pfam PF01979 Amidohydrolase family 79 361 5.4E-12 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_0284 a9cea6cea829ee4d354f2f9482512e23 582 Gene3D G3DSA:3.20.20.140 83 326 3.6E-78 T 13-10-2018 BMD_0284 a9cea6cea829ee4d354f2f9482512e23 582 SUPERFAMILY SSF51556 82 332 8.6E-7 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_4190 37c9366186d80bb2753b5817dce498fc 293 SUPERFAMILY SSF102405 82 289 9.16E-31 T 13-10-2018 BMD_4190 37c9366186d80bb2753b5817dce498fc 293 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 73 288 3.8E-75 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 BMD_4190 37c9366186d80bb2753b5817dce498fc 293 SUPERFAMILY SSF47781 11 63 7.78E-5 T 13-10-2018 IPR010994 RuvA domain 2-like BMD_4190 37c9366186d80bb2753b5817dce498fc 293 Gene3D G3DSA:3.40.50.450 8 292 1.2E-93 T 13-10-2018 BMD_4190 37c9366186d80bb2753b5817dce498fc 293 Pfam PF02481 DNA recombination-mediator protein A 74 280 1.3E-76 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 138 147 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Gene3D G3DSA:3.40.120.10 5 188 7.7E-45 T 13-10-2018 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 SUPERFAMILY SSF53738 27 233 1.18E-42 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Gene3D G3DSA:3.40.120.10 207 322 8.5E-26 T 13-10-2018 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Gene3D G3DSA:3.30.310.50 475 566 1.3E-7 T 13-10-2018 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 209 310 3.0E-27 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 41 179 4.9E-39 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 294 309 1.5E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 227 246 1.5E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 137 151 1.5E-7 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 SUPERFAMILY SSF53738 207 313 3.92E-22 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 322 443 3.8E-22 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 SUPERFAMILY SSF55957 499 571 6.8E-11 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Gene3D G3DSA:3.40.120.10 323 450 3.7E-38 T 13-10-2018 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 SUPERFAMILY SSF53738 302 452 4.71E-31 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1106 bf3c8a092b95b6b1c60bcfc7ddd4ccbc 578 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 506 551 2.0E-8 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BMD_1774 b1772273def288c5129c3b283e87ef48 444 Gene3D G3DSA:1.20.1250.20 2 206 6.4E-33 T 13-10-2018 BMD_1774 b1772273def288c5129c3b283e87ef48 444 SUPERFAMILY SSF103473 5 430 3.01E-73 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1774 b1772273def288c5129c3b283e87ef48 444 PIRSF PIRSF002808 2 442 4.4E-37 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BMD_1774 b1772273def288c5129c3b283e87ef48 444 Pfam PF07690 Major Facilitator Superfamily 15 392 9.1E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1774 b1772273def288c5129c3b283e87ef48 444 Gene3D G3DSA:1.20.1250.20 230 433 5.0E-35 T 13-10-2018 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Pfam PF00512 His Kinase A (phospho-acceptor) domain 366 433 1.4E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 481 589 3.3E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4353 558d6d72bcd08041b248b114f812e995 590 SUPERFAMILY SSF55874 422 590 2.1E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4353 558d6d72bcd08041b248b114f812e995 590 SUPERFAMILY SSF158472 197 244 4.05E-10 T 13-10-2018 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Pfam PF00989 PAS fold 255 357 2.7E-5 T 13-10-2018 IPR013767 PAS fold GO:0006355 BMD_4353 558d6d72bcd08041b248b114f812e995 590 SMART SM00388 366 433 3.1E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Gene3D G3DSA:3.30.450.20 257 358 1.7E-11 T 13-10-2018 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Gene3D G3DSA:3.30.565.10 438 590 2.5E-48 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_4353 558d6d72bcd08041b248b114f812e995 590 SMART SM00304 196 248 8.8E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_4353 558d6d72bcd08041b248b114f812e995 590 SUPERFAMILY SSF55785 243 358 5.52E-9 T 13-10-2018 IPR035965 PAS domain superfamily BMD_4353 558d6d72bcd08041b248b114f812e995 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 570 1.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4353 558d6d72bcd08041b248b114f812e995 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 545 1.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4353 558d6d72bcd08041b248b114f812e995 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 531 1.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4353 558d6d72bcd08041b248b114f812e995 590 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 589 1.9E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_4353 558d6d72bcd08041b248b114f812e995 590 SMART SM00387 480 590 1.5E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4353 558d6d72bcd08041b248b114f812e995 590 SUPERFAMILY SSF47384 350 434 1.06E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Gene3D G3DSA:1.20.1480.50 159 254 3.2E-19 T 13-10-2018 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Pfam PF00672 HAMP domain 197 243 2.7E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_4353 558d6d72bcd08041b248b114f812e995 590 Gene3D G3DSA:1.10.287.130 359 437 1.2E-24 T 13-10-2018 BMD_1977 8b310aa7e1e5f949fa773214bf4a7afd 503 Pfam PF01593 Flavin containing amine oxidoreductase 12 489 7.9E-30 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 BMD_1977 8b310aa7e1e5f949fa773214bf4a7afd 503 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 5 494 1.0E-132 T 13-10-2018 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 BMD_1977 8b310aa7e1e5f949fa773214bf4a7afd 503 SUPERFAMILY SSF51905 1 492 2.3E-70 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1977 8b310aa7e1e5f949fa773214bf4a7afd 503 Gene3D G3DSA:3.50.50.60 1 114 1.1E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1977 8b310aa7e1e5f949fa773214bf4a7afd 503 Gene3D G3DSA:3.50.50.60 194 329 1.5E-23 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3613 34396260d4293c29f0c84dd06c61b6c7 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 2.1E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3613 34396260d4293c29f0c84dd06c61b6c7 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 2.1E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3613 34396260d4293c29f0c84dd06c61b6c7 116 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 72 87 2.1E-13 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3613 34396260d4293c29f0c84dd06c61b6c7 116 SMART SM00418 19 101 2.6E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3613 34396260d4293c29f0c84dd06c61b6c7 116 SUPERFAMILY SSF46785 12 99 1.28E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3613 34396260d4293c29f0c84dd06c61b6c7 116 Pfam PF01022 Bacterial regulatory protein, arsR family 26 74 1.9E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3613 34396260d4293c29f0c84dd06c61b6c7 116 Gene3D G3DSA:1.10.10.10 4 107 6.0E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2052 e83055c2fc1276063f62d9c2c4f69e2b 59 Pfam PF08141 Small acid-soluble spore protein H family 1 58 5.3E-25 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_2052 e83055c2fc1276063f62d9c2c4f69e2b 59 ProDom PD052450 H SPORE ACID-SOLUBLE SMALL SASP SPORULATION SMALL PROTEIN-RELATED SOLUBLE RBL04815 1 59 7.0E-15 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_2052 e83055c2fc1276063f62d9c2c4f69e2b 59 TIGRFAM TIGR02861 SASP_H: small acid-soluble spore protein, H-type 1 58 1.3E-23 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_2052 e83055c2fc1276063f62d9c2c4f69e2b 59 Hamap MF_00667 Small, acid-soluble spore protein H [sspH]. 1 59 17.989 T 13-10-2018 IPR012610 Small acid-soluble spore protein, SspH GO:0030436|GO:0042601 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 557 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 519 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 PRINTS PR00344 Bacterial sensor protein C-terminal signature 563 576 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 Gene3D G3DSA:1.10.287.130 282 415 1.4E-14 T 13-10-2018 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 Gene3D G3DSA:3.30.565.10 423 583 2.6E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 SMART SM00388 354 422 7.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 Pfam PF00512 His Kinase A (phospho-acceptor) domain 355 413 2.7E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 SMART SM00387 468 579 4.4E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 578 4.5E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 SUPERFAMILY SSF47384 338 420 2.94E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_0321 95bfa29c04bbd04956f5b45fe4034909 584 SUPERFAMILY SSF55874 412 579 2.88E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2943 3bb772eacfa73a5332f471921799f744 120 Pfam PF00543 Nitrogen regulatory protein P-II 8 109 2.1E-32 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BMD_2943 3bb772eacfa73a5332f471921799f744 120 ProSitePatterns PS00638 P-II protein C-terminal region signature. 87 100 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 BMD_2943 3bb772eacfa73a5332f471921799f744 120 PRINTS PR00340 P-II protein signature 27 45 4.8E-24 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BMD_2943 3bb772eacfa73a5332f471921799f744 120 PRINTS PR00340 P-II protein signature 56 79 4.8E-24 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BMD_2943 3bb772eacfa73a5332f471921799f744 120 PRINTS PR00340 P-II protein signature 6 21 4.8E-24 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BMD_2943 3bb772eacfa73a5332f471921799f744 120 PRINTS PR00340 P-II protein signature 87 107 4.8E-24 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BMD_2943 3bb772eacfa73a5332f471921799f744 120 SUPERFAMILY SSF54913 6 118 2.57E-34 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BMD_2943 3bb772eacfa73a5332f471921799f744 120 SMART SM00938 8 109 5.1E-41 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BMD_2943 3bb772eacfa73a5332f471921799f744 120 Gene3D G3DSA:3.30.70.120 1 116 3.1E-41 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_4583 266e2680089e64846b56e0fb29f16ff3 213 SUPERFAMILY SSF53335 7 200 2.55E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4583 266e2680089e64846b56e0fb29f16ff3 213 Pfam PF13649 Methyltransferase domain 49 140 2.2E-9 T 13-10-2018 BMD_4583 266e2680089e64846b56e0fb29f16ff3 213 Gene3D G3DSA:3.40.50.150 24 213 3.7E-40 T 13-10-2018 BMD_4583 266e2680089e64846b56e0fb29f16ff3 213 Hamap MF_02100 Uncharacterized methyltransferase . 2 213 43.335 T 13-10-2018 IPR023553 Uncharacterised methyltransferase, YrrT GO:0008168 BMD_4543 192064b645483df004e9a7d55067c293 327 Hamap MF_01562 UPF0365 protein . 3 323 49.581 T 13-10-2018 IPR022853 Uncharacterised protein family YdfA-immunity BMD_4543 192064b645483df004e9a7d55067c293 327 SMART SM00244 42 222 0.0017 T 13-10-2018 IPR001107 Band 7 domain BMD_4543 192064b645483df004e9a7d55067c293 327 Pfam PF12127 SigmaW regulon antibacterial 10 319 2.4E-164 T 13-10-2018 IPR022853 Uncharacterised protein family YdfA-immunity BMD_1741 d43e96569790880be7e16cf4413addbc 458 Pfam PF00324 Amino acid permease 19 424 1.0E-91 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_1741 d43e96569790880be7e16cf4413addbc 458 PIRSF PIRSF006060 1 457 1.7E-71 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1741 d43e96569790880be7e16cf4413addbc 458 Gene3D G3DSA:1.20.1740.10 10 454 3.4E-57 T 13-10-2018 BMD_1741 d43e96569790880be7e16cf4413addbc 458 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_5188 5849cfb7a3f45453e95b28cb726aff18 323 Pfam PF01515 Phosphate acetyl/butaryl transferase 8 319 1.7E-127 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BMD_5188 5849cfb7a3f45453e95b28cb726aff18 323 SUPERFAMILY SSF53659 6 322 2.14E-92 T 13-10-2018 BMD_5188 5849cfb7a3f45453e95b28cb726aff18 323 Gene3D G3DSA:3.40.50.10950 19 319 4.5E-133 T 13-10-2018 BMD_5188 5849cfb7a3f45453e95b28cb726aff18 323 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 19 319 7.5E-126 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BMD_5188 5849cfb7a3f45453e95b28cb726aff18 323 Gene3D G3DSA:3.40.50.10750 142 295 4.5E-133 T 13-10-2018 BMD_5188 5849cfb7a3f45453e95b28cb726aff18 323 PIRSF PIRSF000428 1 323 2.1E-109 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BMD_2270 94a65840d7b19ff1410ccdf1fb2e855c 284 SUPERFAMILY SSF52091 168 276 8.44E-17 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2270 94a65840d7b19ff1410ccdf1fb2e855c 284 Pfam PF01740 STAS domain 170 270 2.9E-11 T 13-10-2018 IPR002645 STAS domain BMD_2270 94a65840d7b19ff1410ccdf1fb2e855c 284 Gene3D G3DSA:3.30.750.24 163 283 1.2E-32 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0221 7401c30e4ee90575a67896d96fa2f885 93 Gene3D G3DSA:1.10.1220.10 1 93 1.1E-41 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BMD_1082 dd9c785f270b7b90778f15520e6f1d54 87 SUPERFAMILY SSF46785 3 81 3.82E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1082 dd9c785f270b7b90778f15520e6f1d54 87 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 37 52 3.7E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1082 dd9c785f270b7b90778f15520e6f1d54 87 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 3.7E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1082 dd9c785f270b7b90778f15520e6f1d54 87 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 3.7E-15 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1082 dd9c785f270b7b90778f15520e6f1d54 87 Pfam PF01022 Bacterial regulatory protein, arsR family 10 55 4.4E-17 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1082 dd9c785f270b7b90778f15520e6f1d54 87 Gene3D G3DSA:1.10.10.10 1 86 4.7E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1082 dd9c785f270b7b90778f15520e6f1d54 87 SMART SM00418 3 81 5.9E-29 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2058 673d70c4c0262f4f5a801b57d2741c18 156 Pfam PF12638 Staygreen protein 3 145 6.0E-45 T 13-10-2018 IPR024438 Staygreen protein BMD_5238 7d4cd22f178a4e76b33014c1282fb5eb 159 Gene3D G3DSA:3.40.1280.10 1 159 1.2E-66 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BMD_5238 7d4cd22f178a4e76b33014c1282fb5eb 159 PIRSF PIRSF004505 1 159 3.5E-55 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BMD_5238 7d4cd22f178a4e76b33014c1282fb5eb 159 Pfam PF02590 Predicted SPOUT methyltransferase 2 158 4.4E-60 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BMD_5238 7d4cd22f178a4e76b33014c1282fb5eb 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 159 5.8E-68 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BMD_5238 7d4cd22f178a4e76b33014c1282fb5eb 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 159 31.154 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BMD_5238 7d4cd22f178a4e76b33014c1282fb5eb 159 SUPERFAMILY SSF75217 2 157 4.38E-61 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases BMD_1005 c2069baf82805f6f1d579369dcb21a9c 398 SMART SM00854 65 306 9.2E-92 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA BMD_1005 c2069baf82805f6f1d579369dcb21a9c 398 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 65 306 2.5E-76 T 13-10-2018 IPR019079 Capsule synthesis protein, CapA BMD_1005 c2069baf82805f6f1d579369dcb21a9c 398 Gene3D G3DSA:3.60.21.10 119 352 7.7E-9 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_1005 c2069baf82805f6f1d579369dcb21a9c 398 SUPERFAMILY SSF56300 64 323 1.8E-40 T 13-10-2018 BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 295 307 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 Pfam PF00557 Metallopeptidase family M24 148 349 5.0E-63 T 13-10-2018 IPR000994 Peptidase M24 BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 SUPERFAMILY SSF53092 1 138 7.5E-33 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 SUPERFAMILY SSF55920 138 365 3.01E-78 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 PRINTS PR00599 Methionine aminopeptidase-1 signature 317 329 1.5E-6 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 PRINTS PR00599 Methionine aminopeptidase-1 signature 219 235 1.5E-6 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 Gene3D G3DSA:3.90.230.10 140 365 5.0E-80 T 13-10-2018 BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 Pfam PF01321 Creatinase/Prolidase N-terminal domain 4 139 1.4E-27 T 13-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 BMD_3907 8c7e28be2ee0c1237a698e7e3ec4442d 366 Gene3D G3DSA:3.40.350.10 1 139 1.6E-39 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BMD_3099 b418959bd7315e14211d9807178edd83 476 SUPERFAMILY SSF48557 8 463 7.38E-149 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_3099 b418959bd7315e14211d9807178edd83 476 Gene3D G3DSA:1.20.200.10 143 410 3.5E-116 T 13-10-2018 BMD_3099 b418959bd7315e14211d9807178edd83 476 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 1.8E-6 T 13-10-2018 BMD_3099 b418959bd7315e14211d9807178edd83 476 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 1.8E-6 T 13-10-2018 BMD_3099 b418959bd7315e14211d9807178edd83 476 Pfam PF10415 Fumarase C C-terminus 411 464 7.0E-17 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_3099 b418959bd7315e14211d9807178edd83 476 Pfam PF00206 Lyase 16 345 2.4E-113 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal BMD_3099 b418959bd7315e14211d9807178edd83 476 Gene3D G3DSA:1.10.40.30 411 462 5.6E-19 T 13-10-2018 BMD_3099 b418959bd7315e14211d9807178edd83 476 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BMD_3099 b418959bd7315e14211d9807178edd83 476 Gene3D G3DSA:1.10.275.10 9 142 3.0E-57 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal BMD_3099 b418959bd7315e14211d9807178edd83 476 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 9 470 3.5E-237 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 BMD_3099 b418959bd7315e14211d9807178edd83 476 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 1.5E-32 T 13-10-2018 IPR000362 Fumarate lyase family BMD_3099 b418959bd7315e14211d9807178edd83 476 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 1.5E-32 T 13-10-2018 IPR000362 Fumarate lyase family BMD_3099 b418959bd7315e14211d9807178edd83 476 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 1.5E-32 T 13-10-2018 IPR000362 Fumarate lyase family BMD_3099 b418959bd7315e14211d9807178edd83 476 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 1.5E-32 T 13-10-2018 IPR000362 Fumarate lyase family BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 Gene3D G3DSA:2.30.30.790 2 114 4.0E-16 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 2 113 6.5E-53 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 PIRSF PIRSF002191 1 114 1.3E-52 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 SUPERFAMILY SSF50104 2 113 2.01E-49 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 Pfam PF01245 Ribosomal protein L19 4 112 9.6E-55 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 33.473 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4196 66fe8c43cb50e60d665a75753b1c13d3 114 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_3490 0294089ead1d85e1c3744ceddcbdf4d3 313 Pfam PF01544 CorA-like Mg2+ transporter protein 7 294 1.6E-33 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BMD_3490 0294089ead1d85e1c3744ceddcbdf4d3 313 SUPERFAMILY SSF143865 6 196 5.1E-6 T 13-10-2018 BMD_3490 0294089ead1d85e1c3744ceddcbdf4d3 313 SUPERFAMILY SSF144083 235 296 6.28E-17 T 13-10-2018 BMD_3490 0294089ead1d85e1c3744ceddcbdf4d3 313 Gene3D G3DSA:1.20.58.340 223 299 1.5E-19 T 13-10-2018 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 SUPERFAMILY SSF56327 151 308 3.03E-51 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 Gene3D G3DSA:3.90.110.10 150 309 6.1E-61 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 Gene3D G3DSA:3.40.50.720 1 149 6.8E-60 T 13-10-2018 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 5 311 2.5E-162 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 7 147 9.6E-42 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 151 306 5.1E-27 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 SUPERFAMILY SSF51735 4 147 4.12E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 PIRSF PIRSF000102 2 309 5.2E-105 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 PRINTS PR00086 L-lactate dehydrogenase signature 175 188 2.7E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 2.7E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 PRINTS PR00086 L-lactate dehydrogenase signature 145 163 2.7E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 PRINTS PR00086 L-lactate dehydrogenase signature 7 31 2.7E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 PRINTS PR00086 L-lactate dehydrogenase signature 121 141 2.7E-31 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BMD_4754 8244ffcc878adf5cbcfa36aab7b7b4c3 312 Hamap MF_00487 Malate dehydrogenase [mdh]. 6 312 46.288 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BMD_3346 2d61e0e65b2db0ef02b1445af469a4ae 98 Pfam PF00581 Rhodanese-like domain 6 95 6.0E-15 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_3346 2d61e0e65b2db0ef02b1445af469a4ae 98 SUPERFAMILY SSF52821 2 95 1.96E-30 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3346 2d61e0e65b2db0ef02b1445af469a4ae 98 Gene3D G3DSA:3.40.250.10 1 97 1.3E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3346 2d61e0e65b2db0ef02b1445af469a4ae 98 SMART SM00450 4 96 1.2E-17 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_1478 dcf96b6f6f12ecc0ba27063722dcc318 284 Pfam PF06724 Domain of Unknown Function (DUF1206) 212 279 1.7E-19 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 BMD_1478 dcf96b6f6f12ecc0ba27063722dcc318 284 Pfam PF06724 Domain of Unknown Function (DUF1206) 33 100 1.1E-17 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 BMD_1478 dcf96b6f6f12ecc0ba27063722dcc318 284 Pfam PF06724 Domain of Unknown Function (DUF1206) 118 184 8.5E-8 T 13-10-2018 IPR009597 Domain of unknown function DUF1206 BMD_3706 aad6994ff631df80d21fe15ec188653b 309 Pfam PF00892 EamA-like transporter family 6 134 5.1E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3706 aad6994ff631df80d21fe15ec188653b 309 Pfam PF00892 EamA-like transporter family 149 287 3.4E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3706 aad6994ff631df80d21fe15ec188653b 309 SUPERFAMILY SSF103481 36 137 2.09E-11 T 13-10-2018 BMD_3706 aad6994ff631df80d21fe15ec188653b 309 SUPERFAMILY SSF103481 190 290 1.22E-14 T 13-10-2018 BMD_1430 545e2f2c902e27febc1c8b0cc91944ba 645 Pfam PF13307 Helicase C-terminal domain 490 638 1.9E-24 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BMD_1430 545e2f2c902e27febc1c8b0cc91944ba 645 SUPERFAMILY SSF52540 51 624 7.82E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1430 545e2f2c902e27febc1c8b0cc91944ba 645 Gene3D G3DSA:3.40.50.300 462 641 3.6E-24 T 13-10-2018 BMD_1430 545e2f2c902e27febc1c8b0cc91944ba 645 SMART SM00491 497 632 5.8E-7 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BMD_1430 545e2f2c902e27febc1c8b0cc91944ba 645 Gene3D G3DSA:3.40.50.300 37 309 8.9E-30 T 13-10-2018 BMD_1114 8743bd258edde749c5dddf4c01c5d7b3 294 Gene3D G3DSA:3.90.550.10 1 292 4.7E-94 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1114 8743bd258edde749c5dddf4c01c5d7b3 294 SUPERFAMILY SSF53448 4 275 4.38E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1114 8743bd258edde749c5dddf4c01c5d7b3 294 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 263 6.9E-120 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BMD_1114 8743bd258edde749c5dddf4c01c5d7b3 294 Pfam PF00483 Nucleotidyl transferase 6 258 5.0E-35 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_0046 6128eab5c261ac0b3de67c72444ee58b 208 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BMD_0046 6128eab5c261ac0b3de67c72444ee58b 208 Hamap MF_00165 Thymidylate kinase [tmk]. 4 207 30.983 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BMD_0046 6128eab5c261ac0b3de67c72444ee58b 208 SUPERFAMILY SSF52540 1 207 1.95E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0046 6128eab5c261ac0b3de67c72444ee58b 208 Pfam PF02223 Thymidylate kinase 8 198 4.2E-54 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 BMD_0046 6128eab5c261ac0b3de67c72444ee58b 208 Gene3D G3DSA:3.40.50.300 1 208 3.4E-67 T 13-10-2018 BMD_0046 6128eab5c261ac0b3de67c72444ee58b 208 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 197 5.5E-61 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 Gene3D G3DSA:3.30.250.10 267 342 1.3E-28 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 SMART SM00382 56 227 4.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 SUPERFAMILY SSF52540 2 266 4.87E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 SUPERFAMILY SSF54752 267 325 3.79E-22 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 ProSitePatterns PS00321 recA signature. 212 220 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 Hamap MF_00268 Protein RecA [recA]. 4 328 53.451 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 3 323 4.3E-177 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 Pfam PF00154 recA bacterial DNA recombination protein 7 267 3.7E-147 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 Gene3D G3DSA:3.40.50.300 25 266 4.0E-82 T 13-10-2018 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 PRINTS PR00142 RecA protein signature 209 237 3.6E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 PRINTS PR00142 RecA protein signature 242 271 3.6E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 PRINTS PR00142 RecA protein signature 92 121 3.6E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 PRINTS PR00142 RecA protein signature 126 155 3.6E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 PRINTS PR00142 RecA protein signature 296 313 3.6E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_4106 6ac2a6e87fb770aa9d8183a2562dbda8 345 PRINTS PR00142 RecA protein signature 164 193 3.6E-85 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BMD_3063 ebe52256185e10634541e31b9e46a01c 89 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 89 25.059 T 13-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid BMD_3063 ebe52256185e10634541e31b9e46a01c 89 ProSitePatterns PS00527 Ribosomal protein S14 signature. 51 73 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_3063 ebe52256185e10634541e31b9e46a01c 89 SUPERFAMILY SSF57716 2 89 1.78E-32 T 13-10-2018 BMD_3063 ebe52256185e10634541e31b9e46a01c 89 Pfam PF00253 Ribosomal protein S14p/S29e 36 88 1.1E-29 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_3063 ebe52256185e10634541e31b9e46a01c 89 Gene3D G3DSA:4.10.830.10 28 89 2.4E-26 T 13-10-2018 BMD_2383 b1d09b61033d67e1f8d06680854df608 268 PIRSF PIRSF009141 1 259 1.8E-124 T 13-10-2018 IPR008535 Protein of unknown function DUF817 BMD_2383 b1d09b61033d67e1f8d06680854df608 268 Pfam PF05675 Protein of unknown function (DUF817) 3 237 8.9E-106 T 13-10-2018 IPR008535 Protein of unknown function DUF817 BMD_2734 39acc24b58c39727a7f1385b6724069a 114 Pfam PF16888 Domain of unknown function (DUF5082) 7 108 1.3E-10 T 13-10-2018 IPR031681 Protein of unknown function DUF5082 BMD_2734 39acc24b58c39727a7f1385b6724069a 114 ProDom PD338809 BH2346 YXIB BH4015 BH0976 PREFOLDIN 20 107 1.0E-10 T 13-10-2018 BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 SUPERFAMILY SSF46785 7 138 1.37E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 SMART SM00347 27 127 5.6E-25 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 Pfam PF01047 MarR family 34 91 9.3E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 Gene3D G3DSA:1.10.10.10 1 139 1.6E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 6.8E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 6.8E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 6.8E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1200 2b2e48b7f3ca50462562943c107b5f3d 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 6.8E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 24 95 5.1E-8 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 216 1.4E-15 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 Gene3D G3DSA:2.40.110.10 134 223 3.0E-22 T 13-10-2018 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 Gene3D G3DSA:1.10.540.10 4 119 8.6E-20 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 Gene3D G3DSA:1.20.140.10 239 378 7.1E-31 T 13-10-2018 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 244 360 4.6E-15 T 13-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 SUPERFAMILY SSF56645 22 227 3.4E-42 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 SUPERFAMILY SSF47203 239 379 1.93E-25 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 PIRSF PIRSF016578 136 381 1.9E-22 T 13-10-2018 BMD_2954 417d48c6fa3ff668d0314a701cbf1094 381 PIRSF PIRSF016578 1 97 2.4E-9 T 13-10-2018 BMD_0852 fb6a8f1bc8bd19b30c70b7ac8bc5f593 434 TIGRFAM TIGR00784 citMHS: citrate transporter 1 434 7.8E-201 T 13-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 BMD_0852 fb6a8f1bc8bd19b30c70b7ac8bc5f593 434 Pfam PF03600 Citrate transporter 13 380 1.5E-53 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BMD_4103 532cffdecccfe42ebf10f68dc5e7f419 86 Gene3D G3DSA:3.30.110.20 1 86 4.6E-37 T 13-10-2018 IPR036882 Alba-like domain superfamily GO:0003676 BMD_4103 532cffdecccfe42ebf10f68dc5e7f419 86 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 3 86 5.0E-33 T 13-10-2018 IPR007347 Sporulation stage V, protein S BMD_4103 532cffdecccfe42ebf10f68dc5e7f419 86 Pfam PF04232 Stage V sporulation protein S (SpoVS) 2 84 9.9E-41 T 13-10-2018 IPR007347 Sporulation stage V, protein S BMD_2398 bf45a48680c0edd7ad69208f3b35eeeb 140 PIRSF PIRSF029598 4 140 9.6E-41 T 13-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 BMD_2398 bf45a48680c0edd7ad69208f3b35eeeb 140 Pfam PF06146 Phosphate-starvation-inducible E 60 125 1.3E-17 T 13-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like BMD_2521 483a166af1c0f307d9c2e35cea068418 456 Gene3D G3DSA:3.20.20.70 142 453 3.8E-142 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2521 483a166af1c0f307d9c2e35cea068418 456 Gene3D G3DSA:1.10.220.70 55 141 2.4E-27 T 13-10-2018 BMD_2521 483a166af1c0f307d9c2e35cea068418 456 PIRSF PIRSF018788 1 456 4.9E-209 T 13-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 BMD_2521 483a166af1c0f307d9c2e35cea068418 456 Gene3D G3DSA:2.30.170.30 1 54 7.2E-22 T 13-10-2018 BMD_2521 483a166af1c0f307d9c2e35cea068418 456 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 443 3.8E-201 T 13-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 BMD_2709 e6e67b1b5fb401873dec83a004130314 474 Gene3D G3DSA:1.20.1250.20 241 473 2.5E-25 T 13-10-2018 BMD_2709 e6e67b1b5fb401873dec83a004130314 474 SUPERFAMILY SSF103473 1 460 1.2E-65 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2709 e6e67b1b5fb401873dec83a004130314 474 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 2 454 6.1E-121 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_2709 e6e67b1b5fb401873dec83a004130314 474 Pfam PF07690 Major Facilitator Superfamily 2 391 6.8E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2709 e6e67b1b5fb401873dec83a004130314 474 Gene3D G3DSA:1.20.1720.10 1 226 3.3E-40 T 13-10-2018 BMD_2709 e6e67b1b5fb401873dec83a004130314 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 283 307 5.7E-6 T 13-10-2018 BMD_2709 e6e67b1b5fb401873dec83a004130314 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 119 143 5.7E-6 T 13-10-2018 BMD_2709 e6e67b1b5fb401873dec83a004130314 474 PRINTS PR01036 Tetracycline resistance protein TetB signature 89 109 5.7E-6 T 13-10-2018 BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 Gene3D G3DSA:3.40.50.2300 2 145 1.6E-36 T 13-10-2018 BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 Pfam PF00072 Response regulator receiver domain 4 115 1.6E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 Pfam PF08279 HTH domain 165 204 1.3E-4 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 SUPERFAMILY SSF52172 2 136 1.04E-38 T 13-10-2018 IPR011006 CheY-like superfamily BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 SUPERFAMILY SSF46785 169 239 3.81E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 Gene3D G3DSA:1.10.10.10 155 241 8.1E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 PIRSF PIRSF006171 1 228 6.4E-85 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 BMD_0341 5b6aca0f7e78afd4ada8d546591f4972 241 SMART SM00448 2 115 1.1E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2265 0f8e05c5290c34f9fe2d66747dc8970e 170 SUPERFAMILY SSF88723 5 129 7.57E-19 T 13-10-2018 IPR029060 PIN-like domain superfamily BMD_2265 0f8e05c5290c34f9fe2d66747dc8970e 170 Gene3D G3DSA:3.40.50.1010 1 136 2.5E-21 T 13-10-2018 BMD_2265 0f8e05c5290c34f9fe2d66747dc8970e 170 Pfam PF01850 PIN domain 6 127 3.0E-11 T 13-10-2018 IPR002716 PIN domain BMD_2474 6d5f3dd0514b75a071c76e211d751a0f 163 Pfam PF00857 Isochorismatase family 11 132 4.3E-26 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 BMD_2474 6d5f3dd0514b75a071c76e211d751a0f 163 SUPERFAMILY SSF52499 9 153 3.92E-34 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_2474 6d5f3dd0514b75a071c76e211d751a0f 163 Gene3D G3DSA:3.40.50.850 1 157 3.5E-36 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BMD_0123 67d2bb4d27cf7563fb0aba0a87124948 166 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 6 143 0.001 T 13-10-2018 BMD_0123 67d2bb4d27cf7563fb0aba0a87124948 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 29.916 T 13-10-2018 IPR022973 Ribosomal protein L10 BMD_0123 67d2bb4d27cf7563fb0aba0a87124948 166 Gene3D G3DSA:3.30.70.1730 5 133 1.5E-45 T 13-10-2018 BMD_0123 67d2bb4d27cf7563fb0aba0a87124948 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 13-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0123 67d2bb4d27cf7563fb0aba0a87124948 166 Pfam PF00466 Ribosomal protein L10 6 101 6.8E-31 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 BMD_0123 67d2bb4d27cf7563fb0aba0a87124948 166 SUPERFAMILY SSF160369 5 160 7.32E-57 T 13-10-2018 BMD_4851 54864428cd5192c7f3acb9e412279a9e 332 Gene3D G3DSA:3.40.190.10 142 331 8.3E-38 T 13-10-2018 BMD_4851 54864428cd5192c7f3acb9e412279a9e 332 Gene3D G3DSA:3.40.190.10 27 126 7.6E-14 T 13-10-2018 BMD_4851 54864428cd5192c7f3acb9e412279a9e 332 Pfam PF13379 NMT1-like family 40 262 2.2E-26 T 13-10-2018 BMD_4851 54864428cd5192c7f3acb9e412279a9e 332 SUPERFAMILY SSF53850 31 255 5.44E-38 T 13-10-2018 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 Pfam PF00285 Citrate synthase, C-terminal domain 6 354 2.6E-116 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 PIRSF PIRSF001369 1 366 2.2E-127 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type BMD_3077 3e546f82a1d80b6f532025001f42a438 367 ProSitePatterns PS00480 Citrate synthase signature. 250 262 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 Gene3D G3DSA:1.10.580.10 17 344 7.2E-124 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 PRINTS PR00143 Citrate synthase signature 190 218 1.2E-33 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 PRINTS PR00143 Citrate synthase signature 168 183 1.2E-33 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 PRINTS PR00143 Citrate synthase signature 304 320 1.2E-33 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 PRINTS PR00143 Citrate synthase signature 324 338 1.2E-33 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 PRINTS PR00143 Citrate synthase signature 243 263 1.2E-33 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 PRINTS PR00143 Citrate synthase signature 119 132 1.2E-33 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 BMD_3077 3e546f82a1d80b6f532025001f42a438 367 Gene3D G3DSA:1.10.230.10 216 318 7.2E-124 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain BMD_3077 3e546f82a1d80b6f532025001f42a438 367 SUPERFAMILY SSF48256 2 362 1.7E-119 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 BMD_2956 9f78d156b5d7f72bc0310f6916502f8f 259 Gene3D G3DSA:3.30.750.24 137 254 1.2E-27 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2956 9f78d156b5d7f72bc0310f6916502f8f 259 SUPERFAMILY SSF52091 140 241 3.34E-10 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2956 9f78d156b5d7f72bc0310f6916502f8f 259 Pfam PF01740 STAS domain 147 240 4.4E-5 T 13-10-2018 IPR002645 STAS domain BMD_2956 9f78d156b5d7f72bc0310f6916502f8f 259 SUPERFAMILY SSF55785 16 124 5.14E-6 T 13-10-2018 IPR035965 PAS domain superfamily BMD_2956 9f78d156b5d7f72bc0310f6916502f8f 259 Gene3D G3DSA:3.30.450.20 14 123 1.8E-18 T 13-10-2018 BMD_0825 cdea550c4a4367e95661a365d869a0df 289 Pfam PF13349 Putative adhesin 45 287 1.2E-39 T 13-10-2018 IPR025164 Putative adhesin BMD_2485 7f6c91a30fdc62e6d85afb3ed6bbe388 218 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 174 6.6E-27 T 13-10-2018 BMD_2485 7f6c91a30fdc62e6d85afb3ed6bbe388 218 SUPERFAMILY SSF56784 1 209 7.29E-39 T 13-10-2018 IPR036412 HAD-like superfamily BMD_2485 7f6c91a30fdc62e6d85afb3ed6bbe388 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 7 169 1.3E-11 T 13-10-2018 BMD_2485 7f6c91a30fdc62e6d85afb3ed6bbe388 218 Gene3D G3DSA:3.90.1470.20 15 132 3.5E-47 T 13-10-2018 BMD_2485 7f6c91a30fdc62e6d85afb3ed6bbe388 218 TIGRFAM TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 5 183 1.4E-41 T 13-10-2018 IPR006384 Pyridoxal phosphate phosphatase-related GO:0016791 BMD_2485 7f6c91a30fdc62e6d85afb3ed6bbe388 218 Gene3D G3DSA:3.40.50.1000 7 206 3.5E-47 T 13-10-2018 IPR023214 HAD superfamily BMD_4455 520ebc40bd58f5996b008c9f0962fad6 170 TIGRFAM TIGR02833 spore_III_AB: stage III sporulation protein AB 2 170 2.9E-62 T 13-10-2018 IPR014198 Stage III sporulation protein AB BMD_4455 520ebc40bd58f5996b008c9f0962fad6 170 Pfam PF09548 Stage III sporulation protein AB (spore_III_AB) 2 170 6.8E-53 T 13-10-2018 IPR014198 Stage III sporulation protein AB BMD_4455 520ebc40bd58f5996b008c9f0962fad6 170 PIRSF PIRSF021435 1 170 3.2E-63 T 13-10-2018 IPR014198 Stage III sporulation protein AB BMD_3834 d498c785d691432eb7bae66d12cba672 338 SUPERFAMILY SSF51430 10 330 8.9E-61 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_3834 d498c785d691432eb7bae66d12cba672 338 Gene3D G3DSA:3.20.20.100 5 325 7.7E-63 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_3834 d498c785d691432eb7bae66d12cba672 338 Pfam PF00248 Aldo/keto reductase family 10 323 4.3E-51 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_1050 7323b0a19c4820e18b95fab59b113d2b 257 SMART SM00052 2 238 4.8E-10 T 13-10-2018 IPR001633 EAL domain BMD_1050 7323b0a19c4820e18b95fab59b113d2b 257 Gene3D G3DSA:3.20.20.450 1 241 2.3E-40 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1050 7323b0a19c4820e18b95fab59b113d2b 257 SUPERFAMILY SSF141868 9 242 1.83E-40 T 13-10-2018 IPR035919 EAL domain superfamily BMD_1050 7323b0a19c4820e18b95fab59b113d2b 257 Pfam PF00563 EAL domain 10 233 4.1E-35 T 13-10-2018 IPR001633 EAL domain BMD_4039 752d6e152b9f17ea8a2f55e84a093e85 192 SUPERFAMILY SSF52833 30 191 3.1E-41 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4039 752d6e152b9f17ea8a2f55e84a093e85 192 Pfam PF02630 SCO1/SenC 14 174 8.1E-40 T 13-10-2018 IPR003782 Copper chaperone SCO1/SenC Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_4039 752d6e152b9f17ea8a2f55e84a093e85 192 Gene3D G3DSA:3.40.30.10 23 191 2.7E-55 T 13-10-2018 BMD_3604 1e31d6ec97ee667027fbb9a969fc78f9 39 Gene3D G3DSA:3.10.170.10 1 25 9.1E-7 T 13-10-2018 BMD_3604 1e31d6ec97ee667027fbb9a969fc78f9 39 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 12 28 4.7E-5 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BMD_3604 1e31d6ec97ee667027fbb9a969fc78f9 39 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 33 39 4.7E-5 T 13-10-2018 IPR023612 Peptidase M4 GO:0004222|GO:0006508 BMD_3604 1e31d6ec97ee667027fbb9a969fc78f9 39 SUPERFAMILY SSF55486 3 37 1.83E-9 T 13-10-2018 BMD_2319 c6881c64293d37b8a0f2523c597bff86 293 SUPERFAMILY SSF48179 191 290 1.02E-26 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_2319 c6881c64293d37b8a0f2523c597bff86 293 Gene3D G3DSA:3.40.50.720 1 187 4.7E-60 T 13-10-2018 BMD_2319 c6881c64293d37b8a0f2523c597bff86 293 Gene3D G3DSA:1.10.1040.10 193 293 8.2E-33 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BMD_2319 c6881c64293d37b8a0f2523c597bff86 293 PIRSF PIRSF000105 1 293 1.0E-89 T 13-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 BMD_2319 c6881c64293d37b8a0f2523c597bff86 293 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 186 4.0E-56 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_2319 c6881c64293d37b8a0f2523c597bff86 293 SUPERFAMILY SSF51735 6 188 7.72E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2319 c6881c64293d37b8a0f2523c597bff86 293 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 287 5.1E-31 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 Pfam PF02743 Cache domain 39 268 7.9E-12 T 13-10-2018 IPR033479 Double Cache domain 1 BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 SUPERFAMILY SSF55874 445 590 2.36E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 Pfam PF06580 Histidine kinase 391 469 8.1E-23 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 SUPERFAMILY SSF158472 327 377 2.75E-7 T 13-10-2018 BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 487 591 3.5E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 SMART SM00304 326 378 2.9E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 Gene3D G3DSA:1.20.1480.50 298 382 1.3E-8 T 13-10-2018 BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 Gene3D G3DSA:3.30.565.10 443 597 7.2E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0607 9b76d9c9dc8ce33cfa6c072d73aee6b7 606 Gene3D G3DSA:3.30.450.20 177 297 2.7E-7 T 13-10-2018 BMD_2275 a98c8874138c1dd63546694dfe875ecc 197 SMART SM00479 8 175 1.3E-14 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_2275 a98c8874138c1dd63546694dfe875ecc 197 SUPERFAMILY SSF53098 10 172 9.83E-38 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_2275 a98c8874138c1dd63546694dfe875ecc 197 Gene3D G3DSA:3.30.420.10 5 173 4.1E-33 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_2275 a98c8874138c1dd63546694dfe875ecc 197 Pfam PF00929 Exonuclease 11 165 7.0E-17 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 Gene3D G3DSA:3.40.1350.30 133 288 1.7E-128 T 13-10-2018 BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 SUPERFAMILY SSF50249 4 65 3.31E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 21 449 4.3E-188 T 13-10-2018 BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 439 449 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 387 418 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 SUPERFAMILY SSF53335 73 454 1.22E-94 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 Gene3D G3DSA:3.40.50.150 86 451 1.7E-128 T 13-10-2018 BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 Gene3D G3DSA:2.40.50.140 2 84 1.1E-21 T 13-10-2018 BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 Pfam PF01938 TRAM domain 9 64 5.5E-11 T 13-10-2018 IPR002792 TRAM domain BMD_0296 3b0e92208c71bbd4055019df79c81af0 457 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 94 454 6.7E-19 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 BMD_0469 587ad69f87516018786c987706a6be6e 357 Pfam PF13378 Enolase C-terminal domain-like 143 349 1.1E-49 T 13-10-2018 IPR029065 Enolase C-terminal domain-like BMD_0469 587ad69f87516018786c987706a6be6e 357 SUPERFAMILY SSF51604 117 349 1.7E-64 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_0469 587ad69f87516018786c987706a6be6e 357 Gene3D G3DSA:3.30.390.10 6 115 3.1E-105 T 13-10-2018 IPR029017 Enolase-like, N-terminal BMD_0469 587ad69f87516018786c987706a6be6e 357 SUPERFAMILY SSF54826 1 124 1.31E-24 T 13-10-2018 BMD_0469 587ad69f87516018786c987706a6be6e 357 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 5 124 7.0E-16 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BMD_0469 587ad69f87516018786c987706a6be6e 357 Gene3D G3DSA:3.20.20.120 116 349 3.1E-105 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_0469 587ad69f87516018786c987706a6be6e 357 SMART SM00922 140 238 1.8E-27 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BMD_4882 10abe816f30f47ca58e8c079862c43a8 476 Pfam PF00534 Glycosyl transferases group 1 285 434 2.8E-15 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_4882 10abe816f30f47ca58e8c079862c43a8 476 Gene3D G3DSA:3.40.50.2000 247 455 4.3E-185 T 13-10-2018 BMD_4882 10abe816f30f47ca58e8c079862c43a8 476 SUPERFAMILY SSF53756 4 473 7.68E-130 T 13-10-2018 BMD_4882 10abe816f30f47ca58e8c079862c43a8 476 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 2 470 4.5E-178 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BMD_4882 10abe816f30f47ca58e8c079862c43a8 476 Pfam PF08323 Starch synthase catalytic domain 2 234 6.7E-86 T 13-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BMD_4882 10abe816f30f47ca58e8c079862c43a8 476 Hamap MF_00484 Glycogen synthase [glgA]. 1 471 46.476 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BMD_4882 10abe816f30f47ca58e8c079862c43a8 476 Gene3D G3DSA:3.40.50.2000 3 469 4.3E-185 T 13-10-2018 BMD_2508 ea6b4233962187e96a594dd2336e107e 166 Gene3D G3DSA:3.40.630.30 1 166 2.5E-40 T 13-10-2018 BMD_2508 ea6b4233962187e96a594dd2336e107e 166 Pfam PF00583 Acetyltransferase (GNAT) family 39 139 1.2E-17 T 13-10-2018 IPR000182 GNAT domain BMD_2508 ea6b4233962187e96a594dd2336e107e 166 SUPERFAMILY SSF55729 1 165 1.63E-31 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0132 bec2c0359708f9132ce62ed78d013306 396 Gene3D G3DSA:2.40.30.10 207 336 3.0E-52 T 13-10-2018 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.999 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 147 1.1E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 6.3E-34 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BMD_0132 bec2c0359708f9132ce62ed78d013306 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 202 5.7E-61 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 SUPERFAMILY SSF50447 204 303 1.08E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_0132 bec2c0359708f9132ce62ed78d013306 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 3.2E-232 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 PRINTS PR00315 GTP-binding elongation factor signature 79 89 2.2E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 PRINTS PR00315 GTP-binding elongation factor signature 132 141 2.2E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.2E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 PRINTS PR00315 GTP-binding elongation factor signature 59 67 2.2E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 PRINTS PR00315 GTP-binding elongation factor signature 95 106 2.2E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 Pfam PF03144 Elongation factor Tu domain 2 226 295 2.7E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 SUPERFAMILY SSF50465 300 394 6.33E-35 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BMD_0132 bec2c0359708f9132ce62ed78d013306 396 Gene3D G3DSA:3.40.50.300 1 204 1.9E-69 T 13-10-2018 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 Gene3D G3DSA:2.40.30.10 340 394 1.2E-27 T 13-10-2018 BMD_0132 bec2c0359708f9132ce62ed78d013306 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 52 67 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site BMD_0132 bec2c0359708f9132ce62ed78d013306 396 SUPERFAMILY SSF52540 6 220 9.32E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 Pfam PF12844 Helix-turn-helix domain 11 68 1.5E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 SUPERFAMILY SSF47413 5 64 2.7E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 SMART SM00028 157 190 0.079 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 SMART SM00028 240 273 180.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 SMART SM00028 200 233 52.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 SUPERFAMILY SSF48452 133 271 9.48E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 Gene3D G3DSA:1.25.40.10 1 290 4.4E-91 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 Pfam PF13181 Tetratricopeptide repeat 241 269 0.011 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_1920 c44b3f666f7d6cfd2c10514bef6c85fc 291 SMART SM00530 9 63 2.2E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_0545 c100bf38628311dba8ebf344cdb6ada3 244 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0545 c100bf38628311dba8ebf344cdb6ada3 244 SUPERFAMILY SSF52540 1 239 6.62E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0545 c100bf38628311dba8ebf344cdb6ada3 244 Pfam PF00005 ABC transporter 17 169 1.6E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0545 c100bf38628311dba8ebf344cdb6ada3 244 PIRSF PIRSF039085 1 244 2.2E-117 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BMD_0545 c100bf38628311dba8ebf344cdb6ada3 244 SMART SM00382 26 217 3.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0545 c100bf38628311dba8ebf344cdb6ada3 244 Gene3D G3DSA:3.40.50.300 1 243 2.6E-76 T 13-10-2018 BMD_2311 9fa23120914dbdcc734d0157396d5cfc 372 SUPERFAMILY SSF54373 225 311 2.22E-16 T 13-10-2018 BMD_2311 9fa23120914dbdcc734d0157396d5cfc 372 SUPERFAMILY SSF51905 2 366 5.18E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2311 9fa23120914dbdcc734d0157396d5cfc 372 Pfam PF01266 FAD dependent oxidoreductase 4 351 2.4E-52 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BMD_2311 9fa23120914dbdcc734d0157396d5cfc 372 Gene3D G3DSA:3.50.50.60 5 351 2.8E-80 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2311 9fa23120914dbdcc734d0157396d5cfc 372 Gene3D G3DSA:3.30.9.10 88 311 2.8E-80 T 13-10-2018 BMD_1348 9a9b6fbdc55134dc30322d007f56c40f 93 Gene3D G3DSA:1.10.287.750 4 93 1.1E-37 T 13-10-2018 IPR036270 UPF0358 superfamily BMD_1348 9a9b6fbdc55134dc30322d007f56c40f 93 Pfam PF07408 Protein of unknown function (DUF1507) 9 91 5.4E-42 T 13-10-2018 IPR009983 Uncharacterised protein family UPF0358 BMD_1348 9a9b6fbdc55134dc30322d007f56c40f 93 SUPERFAMILY SSF140404 5 84 2.75E-37 T 13-10-2018 IPR036270 UPF0358 superfamily BMD_1348 9a9b6fbdc55134dc30322d007f56c40f 93 Hamap MF_01560 UPF0358 protein . 3 93 27.452 T 13-10-2018 IPR009983 Uncharacterised protein family UPF0358 BMD_3158 7e338a7f1d46b07f4c0f10bc12ab566d 115 Gene3D G3DSA:3.40.250.10 25 110 4.1E-7 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_3158 7e338a7f1d46b07f4c0f10bc12ab566d 115 SUPERFAMILY SSF52821 16 105 7.61E-7 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_0592 b4789cbfd80e0af8f5c8b6e194759726 144 Gene3D G3DSA:3.30.428.10 1 144 1.0E-50 T 13-10-2018 IPR036265 HIT-like superfamily BMD_0592 b4789cbfd80e0af8f5c8b6e194759726 144 PRINTS PR00332 Histidine triad family signature 97 107 2.8E-17 T 13-10-2018 IPR001310 Histidine triad (HIT) protein BMD_0592 b4789cbfd80e0af8f5c8b6e194759726 144 PRINTS PR00332 Histidine triad family signature 9 25 2.8E-17 T 13-10-2018 IPR001310 Histidine triad (HIT) protein BMD_0592 b4789cbfd80e0af8f5c8b6e194759726 144 PRINTS PR00332 Histidine triad family signature 30 48 2.8E-17 T 13-10-2018 IPR001310 Histidine triad (HIT) protein BMD_0592 b4789cbfd80e0af8f5c8b6e194759726 144 ProSitePatterns PS00892 HIT domain signature. 90 108 - T 13-10-2018 IPR019808 Histidine triad, conserved site BMD_0592 b4789cbfd80e0af8f5c8b6e194759726 144 Pfam PF01230 HIT domain 15 110 1.0E-27 T 13-10-2018 IPR001310 Histidine triad (HIT) protein BMD_0592 b4789cbfd80e0af8f5c8b6e194759726 144 SUPERFAMILY SSF54197 6 143 3.54E-47 T 13-10-2018 IPR036265 HIT-like superfamily BMD_3681 033fa442705a6d71a1fb5a8847288299 226 SUPERFAMILY SSF89562 20 179 2.75E-47 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily BMD_3681 033fa442705a6d71a1fb5a8847288299 226 Gene3D G3DSA:3.50.30.100 2 191 2.2E-58 T 13-10-2018 BMD_3681 033fa442705a6d71a1fb5a8847288299 226 Pfam PF03737 Aldolase/RraA 21 169 8.8E-43 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 PRINTS PR00050 Cold shock protein signature 4 19 4.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 PRINTS PR00050 Cold shock protein signature 24 33 4.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 PRINTS PR00050 Cold shock protein signature 39 57 4.4E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 SUPERFAMILY SSF50249 1 65 1.83E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 Gene3D G3DSA:2.40.50.140 1 66 6.6E-32 T 13-10-2018 BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 PIRSF PIRSF002599 1 66 1.3E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 SMART SM00357 3 66 5.0E-32 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_2791 03fe4172d6a38ac12eecf08003425a3d 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 4.9E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3261 c2c64a9e5c2e596dd70a5fb3c4666af6 140 Pfam PF14040 Deoxyribonuclease NucA/NucB 43 138 4.3E-12 T 13-10-2018 IPR029476 Deoxyribonuclease NucA/NucB BMD_3419 2a5f9abce16f0111a178763c5123f0ca 159 Pfam PF01969 Protein of unknown function DUF111 15 147 5.1E-47 T 13-10-2018 IPR002822 Nickel insertion protein BMD_3419 2a5f9abce16f0111a178763c5123f0ca 159 Gene3D G3DSA:3.30.70.1380 7 95 1.8E-19 T 13-10-2018 BMD_3419 2a5f9abce16f0111a178763c5123f0ca 159 Gene3D G3DSA:3.10.20.300 96 159 1.1E-5 T 13-10-2018 BMD_1336 2ef4a45de76754f9da58235ddce1cabe 211 Hamap MF_01851 UPF0637 protein . 5 205 38.98 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 BMD_1336 2ef4a45de76754f9da58235ddce1cabe 211 Gene3D G3DSA:3.30.930.20 2 211 1.4E-89 T 13-10-2018 BMD_1336 2ef4a45de76754f9da58235ddce1cabe 211 PIRSF PIRSF021332 1 209 1.9E-88 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 BMD_1336 2ef4a45de76754f9da58235ddce1cabe 211 SUPERFAMILY SSF142913 3 208 3.66E-83 T 13-10-2018 BMD_1336 2ef4a45de76754f9da58235ddce1cabe 211 Pfam PF06335 Protein of unknown function (DUF1054) 6 203 9.7E-86 T 13-10-2018 IPR009403 Protein of unknown function UPF0637 BMD_1868 187c083bf11a7a7bea6fc5c0a2dbd8a6 478 Gene3D G3DSA:3.50.50.60 27 303 1.2E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1868 187c083bf11a7a7bea6fc5c0a2dbd8a6 478 SUPERFAMILY SSF51905 36 382 4.03E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1868 187c083bf11a7a7bea6fc5c0a2dbd8a6 478 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 39 259 8.2E-14 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Gene3D G3DSA:3.30.565.10 6 221 4.2E-87 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 570 630 2.1E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 SUPERFAMILY SSF55874 8 220 1.3E-69 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Hamap MF_00939 DNA topoisomerase 4 subunit B [parE]. 7 639 48.35 T 13-10-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Gene3D G3DSA:3.40.50.670 411 643 1.1E-100 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 ProSitePatterns PS00177 DNA topoisomerase II signature. 427 435 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 SMART SM00433 38 634 0.0 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 SMART SM00387 34 178 2.9E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Pfam PF01751 Toprim domain 424 524 7.1E-16 T 13-10-2018 IPR006171 TOPRIM domain BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Pfam PF00204 DNA gyrase B 223 393 2.9E-57 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 SUPERFAMILY SSF56719 399 634 6.28E-85 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 177 3.2E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 TIGRFAM TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit 4 642 0.0 T 13-10-2018 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 SUPERFAMILY SSF54211 223 394 1.63E-53 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 491 507 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 509 526 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 73 86 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 115 129 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 529 541 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 38 53 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 269 282 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 573 589 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR00418 DNA topoisomerase II family signature 425 439 6.8E-70 T 13-10-2018 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 9 19 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 222 244 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 313 329 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 363 377 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 475 484 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 610 626 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 198 211 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 594 606 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 183 198 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 PRINTS PR01159 DNA gyrase subunit B signature 377 397 1.9E-60 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BMD_2534 75cf14bce1c691abae0d37ba9497cef1 658 Gene3D G3DSA:3.30.230.10 222 403 2.1E-70 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_1578 8af80221da6bb6b092b8989b6f8fb0c3 272 SUPERFAMILY SSF53850 35 272 4.42E-76 T 13-10-2018 BMD_1578 8af80221da6bb6b092b8989b6f8fb0c3 272 Gene3D G3DSA:3.40.190.10 117 221 4.9E-84 T 13-10-2018 BMD_1578 8af80221da6bb6b092b8989b6f8fb0c3 272 Pfam PF03180 NLPA lipoprotein 36 272 1.7E-81 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_1578 8af80221da6bb6b092b8989b6f8fb0c3 272 Gene3D G3DSA:3.40.190.10 36 269 4.9E-84 T 13-10-2018 BMD_1578 8af80221da6bb6b092b8989b6f8fb0c3 272 PIRSF PIRSF002854 1 272 2.3E-87 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_0999 75597d7df9ec994be397922aeb0db0f6 113 Pfam PF00893 Small Multidrug Resistance protein 1 92 4.1E-29 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BMD_0999 75597d7df9ec994be397922aeb0db0f6 113 Gene3D G3DSA:1.10.3730.20 1 109 1.0E-31 T 13-10-2018 BMD_0999 75597d7df9ec994be397922aeb0db0f6 113 SUPERFAMILY SSF103481 4 104 7.32E-18 T 13-10-2018 BMD_4758 7631776c249318c35f62c177bbf29548 369 TIGRFAM TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI 14 359 5.4E-107 T 13-10-2018 IPR014227 Putative transport protein YtvI-like BMD_4758 7631776c249318c35f62c177bbf29548 369 Pfam PF01594 AI-2E family transporter 13 355 1.7E-59 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 SUPERFAMILY SSF47928 3 105 2.09E-24 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 Gene3D G3DSA:1.10.520.20 3 105 2.4E-12 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 PRINTS PR00125 ATP synthase delta subunit signature 6 25 2.5E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 PRINTS PR00125 ATP synthase delta subunit signature 151 169 2.5E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 PRINTS PR00125 ATP synthase delta subunit signature 136 151 2.5E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 PRINTS PR00125 ATP synthase delta subunit signature 74 85 2.5E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 PRINTS PR00125 ATP synthase delta subunit signature 85 99 2.5E-25 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 6 175 9.7E-50 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 Pfam PF00213 ATP synthase delta (OSCP) subunit 6 174 1.0E-48 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 Hamap MF_01416 ATP synthase subunit delta [atpD]. 2 178 19.949 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_5137 9ee66799f85472fb795cc435e3f052e9 181 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 138 157 - T 13-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BMD_3935 e264c1901d0921b7e179512a2cc20e65 294 Pfam PF14358 Domain of unknown function (DUF4405) 77 135 2.4E-10 T 13-10-2018 IPR025517 Domain of unknown function DUF4405 BMD_3935 e264c1901d0921b7e179512a2cc20e65 294 SUPERFAMILY SSF81342 25 135 5.76E-6 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BMD_4401 9e71680b88bed209d587327261823e1f 338 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 325 1.7E-93 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BMD_4401 9e71680b88bed209d587327261823e1f 338 Gene3D G3DSA:3.20.20.70 2 338 6.5E-129 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4401 9e71680b88bed209d587327261823e1f 338 Hamap MF_01614 NADPH dehydrogenase [namA]. 2 338 67.025 T 13-10-2018 IPR023663 NADPH dehydrogenase GO:0003959|GO:0055114 BMD_4401 9e71680b88bed209d587327261823e1f 338 SUPERFAMILY SSF51395 3 334 2.82E-113 T 13-10-2018 BMD_0573 c87646336f16255a6f4f785bc474716b 499 Pfam PF04055 Radical SAM superfamily 181 353 1.8E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_0573 c87646336f16255a6f4f785bc474716b 499 Gene3D G3DSA:3.80.30.20 130 491 1.6E-65 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BMD_0573 c87646336f16255a6f4f785bc474716b 499 SMART SM00729 173 397 1.5E-43 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_0573 c87646336f16255a6f4f785bc474716b 499 SUPERFAMILY SSF102114 160 484 3.27E-67 T 13-10-2018 BMD_0573 c87646336f16255a6f4f785bc474716b 499 TIGRFAM TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ 90 492 9.9E-150 T 13-10-2018 IPR023995 Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ BMD_1448 ebb8a7b380a709917a015641c0aac9b3 60 Pfam PF10782 Zinc-finger 2 58 1.6E-28 T 13-10-2018 IPR019718 Protein of unknown function DUF2602 BMD_3963 710ba1d7a9eb900a0d8e89e464e040a2 312 SMART SM00849 45 244 3.2E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_3963 710ba1d7a9eb900a0d8e89e464e040a2 312 SUPERFAMILY SSF56281 27 253 8.39E-34 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_3963 710ba1d7a9eb900a0d8e89e464e040a2 312 Gene3D G3DSA:3.60.15.10 25 262 9.7E-32 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_3963 710ba1d7a9eb900a0d8e89e464e040a2 312 Pfam PF00753 Metallo-beta-lactamase superfamily 50 209 1.3E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 SUPERFAMILY SSF53623 102 307 8.63E-51 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 Pfam PF08245 Mur ligase middle domain 116 289 2.2E-33 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 Pfam PF02875 Mur ligase family, glutamate ligase domain 310 376 1.2E-8 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 SUPERFAMILY SSF53244 309 448 2.26E-40 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 10 448 35.124 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 Gene3D G3DSA:3.90.190.20 314 447 1.8E-42 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 Gene3D G3DSA:3.40.50.720 10 94 2.2E-30 T 13-10-2018 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 SUPERFAMILY SSF51984 6 99 6.02E-19 T 13-10-2018 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 Gene3D G3DSA:3.40.1190.10 101 307 1.8E-65 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_4265 fe7083fa0862bbc8e9e543bf02d55efc 449 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 11 446 7.0E-136 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BMD_0706 bf9c741dce3bc8527bfdb3dae6b5e30d 548 SUPERFAMILY SSF53850 40 540 5.7E-138 T 13-10-2018 BMD_0706 bf9c741dce3bc8527bfdb3dae6b5e30d 548 PIRSF PIRSF002741 1 547 3.3E-140 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_0706 bf9c741dce3bc8527bfdb3dae6b5e30d 548 Gene3D G3DSA:3.10.105.10 305 521 5.8E-173 T 13-10-2018 BMD_0706 bf9c741dce3bc8527bfdb3dae6b5e30d 548 Gene3D G3DSA:3.90.76.10 77 199 5.8E-173 T 13-10-2018 BMD_0706 bf9c741dce3bc8527bfdb3dae6b5e30d 548 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 88 470 3.1E-87 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_0706 bf9c741dce3bc8527bfdb3dae6b5e30d 548 Gene3D G3DSA:3.40.190.10 57 534 5.8E-173 T 13-10-2018 BMD_4036 26e8a7ab0739024a26d3d6f7e98a66b6 251 Pfam PF14344 Domain of unknown function (DUF4397) 61 174 1.8E-35 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 6 133 3.0E-40 T 13-10-2018 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 Pfam PF02378 Phosphotransferase system, EIIC 295 564 2.1E-14 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 170 251 6.1E-32 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 SUPERFAMILY SSF55804 1 147 3.53E-44 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 SUPERFAMILY SSF52794 168 269 9.59E-38 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 52 68 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 Gene3D G3DSA:3.40.930.10 1 150 1.8E-48 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 148 2.8E-40 T 13-10-2018 IPR002178 PTS EIIA type-2 domain BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 278 618 1.6E-135 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 Gene3D G3DSA:3.40.50.2300 156 269 7.2E-43 T 13-10-2018 BMD_2088 fe1231be9903a0ff0cd5c76744706115 623 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 170 259 1.1E-17 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BMD_0136 b7d8a2c3d68d9db10c2037e9a19c0bb0 95 Pfam PF00276 Ribosomal protein L23 6 90 4.6E-32 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BMD_0136 b7d8a2c3d68d9db10c2037e9a19c0bb0 95 Gene3D G3DSA:3.30.70.330 1 95 1.7E-32 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BMD_0136 b7d8a2c3d68d9db10c2037e9a19c0bb0 95 ProSitePatterns PS00050 Ribosomal protein L23 signature. 77 92 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0136 b7d8a2c3d68d9db10c2037e9a19c0bb0 95 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 5 95 22.008 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BMD_0136 b7d8a2c3d68d9db10c2037e9a19c0bb0 95 SUPERFAMILY SSF54189 2 93 9.35E-32 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4651 79d9d01cd1e98f0b0620350990ad689e 266 PIRSF PIRSF003092 1 266 2.7E-94 T 13-10-2018 IPR025501 ATP binding protein MinD BMD_4651 79d9d01cd1e98f0b0620350990ad689e 266 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 262 8.4E-128 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 BMD_4651 79d9d01cd1e98f0b0620350990ad689e 266 SUPERFAMILY SSF52540 5 262 2.21E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4651 79d9d01cd1e98f0b0620350990ad689e 266 Gene3D G3DSA:3.40.50.300 3 254 4.8E-72 T 13-10-2018 BMD_4651 79d9d01cd1e98f0b0620350990ad689e 266 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 218 5.4E-25 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BMD_3788 0a95716fd1f2f3d6e7ddfa221c8d3203 280 Pfam PF00583 Acetyltransferase (GNAT) family 173 265 8.3E-7 T 13-10-2018 IPR000182 GNAT domain BMD_3788 0a95716fd1f2f3d6e7ddfa221c8d3203 280 SUPERFAMILY SSF55729 142 269 2.47E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3788 0a95716fd1f2f3d6e7ddfa221c8d3203 280 Gene3D G3DSA:3.40.630.30 115 274 9.5E-11 T 13-10-2018 BMD_3719 3b255bc724f2838577f50cd4b5fc2e76 432 Pfam PF12698 ABC-2 family transporter protein 2 346 5.8E-25 T 13-10-2018 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.7E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 Gene3D G3DSA:3.40.50.2300 157 286 2.5E-65 T 13-10-2018 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 3.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 3.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 Gene3D G3DSA:3.40.50.2300 63 307 2.5E-65 T 13-10-2018 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 Pfam PF13377 Periplasmic binding protein-like domain 168 327 1.3E-24 T 13-10-2018 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 SUPERFAMILY SSF47413 2 61 1.65E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 Gene3D G3DSA:1.10.260.40 1 59 1.4E-23 T 13-10-2018 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 SUPERFAMILY SSF53822 59 321 1.71E-63 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 13-10-2018 BMD_1564 aafbd5a7addbd2633644b0695eac1e32 327 SMART SM00354 2 72 2.7E-32 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_3339 f20b00c6ae54558a270ff38e7dc8c734 200 Gene3D G3DSA:3.40.50.1820 2 198 5.5E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3339 f20b00c6ae54558a270ff38e7dc8c734 200 SUPERFAMILY SSF53474 6 197 1.8E-18 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3339 f20b00c6ae54558a270ff38e7dc8c734 200 Pfam PF01738 Dienelactone hydrolase family 5 196 1.7E-19 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 Gene3D G3DSA:3.30.860.10 1 92 9.1E-40 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 PIRSF PIRSF002144 1 92 2.6E-32 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 6.1E-47 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 SUPERFAMILY SSF54570 3 84 9.55E-35 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 4.4E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 4.4E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 4.4E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.374 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0138 f343c8ad996e7dde163b0c7497ccbcbe 92 Pfam PF00203 Ribosomal protein S19 3 83 1.5E-35 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_1560 906a05946a27e96671398d6b5d4acc32 461 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_1560 906a05946a27e96671398d6b5d4acc32 461 Pfam PF00324 Amino acid permease 14 424 1.3E-103 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_1560 906a05946a27e96671398d6b5d4acc32 461 Gene3D G3DSA:1.20.1740.10 5 457 1.5E-58 T 13-10-2018 BMD_1560 906a05946a27e96671398d6b5d4acc32 461 PIRSF PIRSF006060 1 460 1.8E-65 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1999 371bae22a5b475c9e48b087a34e6bc30 277 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 4 58 1.0E-21 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain BMD_1999 371bae22a5b475c9e48b087a34e6bc30 277 SUPERFAMILY SSF103088 150 271 7.06E-28 T 13-10-2018 IPR036737 OmpA-like domain superfamily BMD_1999 371bae22a5b475c9e48b087a34e6bc30 277 Gene3D G3DSA:3.30.1330.60 108 276 7.8E-47 T 13-10-2018 IPR036737 OmpA-like domain superfamily BMD_1999 371bae22a5b475c9e48b087a34e6bc30 277 Pfam PF00691 OmpA family 163 263 8.4E-16 T 13-10-2018 IPR006665 OmpA-like domain BMD_4699 95ccc8926b734b5d67a6b19e73198381 374 SUPERFAMILY SSF51679 1 347 1.7E-101 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_4699 95ccc8926b734b5d67a6b19e73198381 374 Gene3D G3DSA:3.20.20.30 1 356 1.4E-153 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_4699 95ccc8926b734b5d67a6b19e73198381 374 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 372 78.003 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 BMD_4699 95ccc8926b734b5d67a6b19e73198381 374 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 3 347 5.2E-190 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 BMD_4699 95ccc8926b734b5d67a6b19e73198381 374 Pfam PF00296 Luciferase-like monooxygenase 1 323 4.0E-92 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_4415 abfda8e40b5353732e27a7ce9e82ddd5 316 Pfam PF11728 Putative aromatic acid exporter C-terminal domain 147 311 2.2E-54 T 13-10-2018 IPR021062 Putative aromatic acid exporter, C-terminal BMD_4415 abfda8e40b5353732e27a7ce9e82ddd5 316 Pfam PF06081 Aromatic acid exporter family member 1 3 143 9.8E-52 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 BMD_4415 abfda8e40b5353732e27a7ce9e82ddd5 316 Gene3D G3DSA:1.20.120.940 142 315 3.5E-53 T 13-10-2018 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily BMD_0290 111f9354f8fb679c1b80fcfca1ccb8d5 397 PIRSF PIRSF012509 1 396 4.0E-150 T 13-10-2018 IPR011426 CamS sex pheromone cAM373 BMD_0290 111f9354f8fb679c1b80fcfca1ccb8d5 397 Gene3D G3DSA:3.10.570.10 42 396 1.5E-131 T 13-10-2018 BMD_0290 111f9354f8fb679c1b80fcfca1ccb8d5 397 Pfam PF07537 CamS sex pheromone cAM373 precursor 57 388 6.1E-123 T 13-10-2018 IPR011426 CamS sex pheromone cAM373 BMD_1165 3ae5312fb48f2a610511e70fac8ac30a 105 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 100 2.1E-18 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BMD_1165 3ae5312fb48f2a610511e70fac8ac30a 105 SUPERFAMILY SSF89360 1 101 4.05E-10 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 Gene3D G3DSA:3.50.50.60 286 487 5.5E-16 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 PRINTS PR00419 Adrenodoxin reductase family signature 295 309 1.1E-25 T 13-10-2018 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 PRINTS PR00419 Adrenodoxin reductase family signature 154 176 1.1E-25 T 13-10-2018 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 PRINTS PR00419 Adrenodoxin reductase family signature 177 190 1.1E-25 T 13-10-2018 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 PRINTS PR00419 Adrenodoxin reductase family signature 219 229 1.1E-25 T 13-10-2018 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 SUPERFAMILY SSF46548 2 163 6.28E-35 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 26 140 7.0E-21 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 SUPERFAMILY SSF51971 151 421 7.06E-62 T 13-10-2018 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 Gene3D G3DSA:3.50.50.60 152 285 9.0E-36 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 493 4.1E-250 T 13-10-2018 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 Gene3D G3DSA:1.10.1060.10 9 151 4.2E-19 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_2056 e964ea206242dd28c6b997e8b82e675a 493 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 153 475 9.4E-27 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BMD_1502 520699378466d54d28a885298e00498d 541 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 509 5.9E-160 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_1502 520699378466d54d28a885298e00498d 541 SUPERFAMILY SSF103473 13 521 7.72E-76 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1502 520699378466d54d28a885298e00498d 541 Pfam PF07690 Major Facilitator Superfamily 24 415 1.1E-52 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1502 520699378466d54d28a885298e00498d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 114 134 8.1E-12 T 13-10-2018 BMD_1502 520699378466d54d28a885298e00498d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 23 47 8.1E-12 T 13-10-2018 BMD_1502 520699378466d54d28a885298e00498d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 144 168 8.1E-12 T 13-10-2018 BMD_1502 520699378466d54d28a885298e00498d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 308 332 8.1E-12 T 13-10-2018 BMD_1502 520699378466d54d28a885298e00498d 541 Gene3D G3DSA:1.20.1720.10 20 229 3.4E-45 T 13-10-2018 BMD_2637 931f7ac65d0f9a59c43073e71ffb37cc 190 SUPERFAMILY SSF52317 1 184 6.51E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2637 931f7ac65d0f9a59c43073e71ffb37cc 190 Gene3D G3DSA:3.40.50.880 1 187 1.3E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2637 931f7ac65d0f9a59c43073e71ffb37cc 190 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 183 1.1E-41 T 13-10-2018 IPR006286 Deglycase PfpI BMD_2637 931f7ac65d0f9a59c43073e71ffb37cc 190 Pfam PF01965 DJ-1/PfpI family 3 178 2.7E-40 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BMD_4389 59520d63c13f615c078f1d09ad2793ac 305 PRINTS PR00069 Aldo-keto reductase signature 134 151 4.6E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_4389 59520d63c13f615c078f1d09ad2793ac 305 PRINTS PR00069 Aldo-keto reductase signature 103 121 4.6E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BMD_4389 59520d63c13f615c078f1d09ad2793ac 305 Pfam PF00248 Aldo/keto reductase family 16 295 1.1E-64 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain BMD_4389 59520d63c13f615c078f1d09ad2793ac 305 Gene3D G3DSA:3.20.20.100 1 297 8.8E-105 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_4389 59520d63c13f615c078f1d09ad2793ac 305 SUPERFAMILY SSF51430 1 298 7.46E-79 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 TIGRFAM TIGR02752 MenG_heptapren: demethylmenaquinone methyltransferase 3 233 1.2E-137 T 13-10-2018 IPR014122 Demethylmenaquinone methyltransferase GO:0008168|GO:0009234 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 SUPERFAMILY SSF53335 3 229 2.74E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 Pfam PF01209 ubiE/COQ5 methyltransferase family 1 233 1.4E-104 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 9 233 1.3E-82 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 141 155 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 20 35 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 Gene3D G3DSA:3.40.50.150 15 234 4.0E-67 T 13-10-2018 BMD_4316 90dcfa66c0d5a62ec7cd2f22bb6a6aab 234 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 1 233 36.148 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BMD_3822 18c09e4d519c85933d0b746ce9635a4d 288 Gene3D G3DSA:3.20.20.370 38 284 1.3E-61 T 13-10-2018 BMD_3822 18c09e4d519c85933d0b746ce9635a4d 288 SUPERFAMILY SSF88713 74 247 2.63E-36 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_3822 18c09e4d519c85933d0b746ce9635a4d 288 TIGRFAM TIGR03933 PIA_icaB: intercellular adhesin biosynthesis polysaccharide N-deacetylase 42 282 1.3E-74 T 13-10-2018 IPR023872 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase GO:0016811 BMD_3822 18c09e4d519c85933d0b746ce9635a4d 288 Pfam PF01522 Polysaccharide deacetylase 108 247 3.2E-29 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_2205 19c81f870d4fbeda502b9f17fb6059fe 657 Pfam PF13515 Fusaric acid resistance protein-like 334 458 6.7E-15 T 13-10-2018 BMD_2567 f94f97aadcc86dd6c9f8843440ca4583 184 Pfam PF10400 Virulence activator alpha C-term 97 176 2.2E-14 T 13-10-2018 IPR018309 Transcription regulator PadR, C-terminal BMD_2567 f94f97aadcc86dd6c9f8843440ca4583 184 Pfam PF03551 Transcriptional regulator PadR-like family 10 83 2.2E-15 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal BMD_2567 f94f97aadcc86dd6c9f8843440ca4583 184 Gene3D G3DSA:1.10.10.10 5 92 2.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2567 f94f97aadcc86dd6c9f8843440ca4583 184 SUPERFAMILY SSF46785 6 176 7.44E-38 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0900 2f932418c66b7ff38c30918cbcdfa135 283 SUPERFAMILY SSF53335 70 169 2.15E-17 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0900 2f932418c66b7ff38c30918cbcdfa135 283 Pfam PF13649 Methyltransferase domain 76 148 2.2E-6 T 13-10-2018 BMD_0900 2f932418c66b7ff38c30918cbcdfa135 283 Gene3D G3DSA:3.40.50.150 36 279 4.3E-13 T 13-10-2018 BMD_0644 325899e8f61733f3a4ae158381fef476 394 SUPERFAMILY SSF56300 1 332 6.27E-56 T 13-10-2018 BMD_0644 325899e8f61733f3a4ae158381fef476 394 Gene3D G3DSA:3.60.21.10 1 273 9.0E-79 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_0644 325899e8f61733f3a4ae158381fef476 394 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 276 364 2.9E-7 T 13-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain BMD_0644 325899e8f61733f3a4ae158381fef476 394 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 252 1.1E-73 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 BMD_0644 325899e8f61733f3a4ae158381fef476 394 Pfam PF00149 Calcineurin-like phosphoesterase 1 224 1.9E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 296 319 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 Gene3D G3DSA:1.10.3860.10 1 420 1.5E-133 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 SUPERFAMILY SSF118215 6 402 1.44E-124 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 Pfam PF00375 Sodium:dicarboxylate symporter family 6 400 9.1E-124 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 5.2E-36 T 13-10-2018 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 PRINTS PR00173 Glutamate-aspartate symporter signature 355 375 5.2E-36 T 13-10-2018 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 5.2E-36 T 13-10-2018 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 5.2E-36 T 13-10-2018 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 5.2E-36 T 13-10-2018 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 5.2E-36 T 13-10-2018 BMD_2610 89235dee5c5a3316510703e4c5d6144f 423 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 5.2E-36 T 13-10-2018 BMD_2900 a389cd5d4e7d2034a1e0c5b4d72e42cc 296 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2900 a389cd5d4e7d2034a1e0c5b4d72e42cc 296 SMART SM00382 27 205 3.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2900 a389cd5d4e7d2034a1e0c5b4d72e42cc 296 Pfam PF00005 ABC transporter 18 157 2.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2900 a389cd5d4e7d2034a1e0c5b4d72e42cc 296 SUPERFAMILY SSF52540 3 220 2.83E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2900 a389cd5d4e7d2034a1e0c5b4d72e42cc 296 Pfam PF13732 Domain of unknown function (DUF4162) 210 293 1.4E-6 T 13-10-2018 IPR025302 Domain of unknown function DUF4162 BMD_2900 a389cd5d4e7d2034a1e0c5b4d72e42cc 296 Gene3D G3DSA:3.40.50.300 2 228 2.4E-63 T 13-10-2018 BMD_1097 0139e5639dd926a9d1fcc4649b3353cf 44 Gene3D G3DSA:1.10.8.410 6 44 1.4E-17 T 13-10-2018 BMD_1097 0139e5639dd926a9d1fcc4649b3353cf 44 Pfam PF00700 Bacterial flagellin C-terminal helical region 8 43 3.1E-8 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BMD_1097 0139e5639dd926a9d1fcc4649b3353cf 44 SUPERFAMILY SSF64518 8 44 5.89E-10 T 13-10-2018 BMD_2002 796e7765a4e8ba5903fd7b27c7b0a93a 231 Gene3D G3DSA:2.40.400.10 7 155 9.0E-7 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 BMD_2002 796e7765a4e8ba5903fd7b27c7b0a93a 231 SUPERFAMILY SSF160104 11 153 2.35E-17 T 13-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 BMD_2002 796e7765a4e8ba5903fd7b27c7b0a93a 231 Pfam PF09844 Uncharacterized conserved protein (COG2071) 8 221 9.6E-70 T 13-10-2018 IPR018644 Protein of unknown function DUF2071 BMD_2768 3cd154dc324f04dc6b73c3c59a9c3f52 109 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 31 82 6.5E-6 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 BMD_2768 3cd154dc324f04dc6b73c3c59a9c3f52 109 SUPERFAMILY SSF101386 11 83 7.1E-6 T 13-10-2018 BMD_3386 f610c9e797ed57f92c66c59e734c458d 179 SUPERFAMILY SSF55729 1 174 1.28E-49 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3386 f610c9e797ed57f92c66c59e734c458d 179 Pfam PF13302 Acetyltransferase (GNAT) domain 9 149 2.3E-31 T 13-10-2018 IPR000182 GNAT domain BMD_3386 f610c9e797ed57f92c66c59e734c458d 179 Gene3D G3DSA:3.40.630.30 3 170 3.2E-48 T 13-10-2018 BMD_4363 69688c92a6642f4c44c6bd885f865a17 251 Hamap MF_01805 Segregation and condensation protein A [scpA]. 3 246 25.861 T 13-10-2018 IPR003768 Segregation and condensation protein A BMD_4363 69688c92a6642f4c44c6bd885f865a17 251 Pfam PF02616 Segregation and condensation protein ScpA 20 243 2.1E-53 T 13-10-2018 IPR003768 Segregation and condensation protein A BMD_5107 1d6b46affaf2b01bdfc924e84a232605 135 TIGRFAM TIGR00208 fliS: flagellar protein FliS 12 117 2.3E-17 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BMD_5107 1d6b46affaf2b01bdfc924e84a232605 135 SUPERFAMILY SSF101116 9 118 5.89E-27 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 BMD_5107 1d6b46affaf2b01bdfc924e84a232605 135 Gene3D G3DSA:1.20.120.340 4 119 2.5E-24 T 13-10-2018 BMD_5107 1d6b46affaf2b01bdfc924e84a232605 135 PIRSF PIRSF039090 5 126 1.1E-24 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BMD_5107 1d6b46affaf2b01bdfc924e84a232605 135 Pfam PF02561 Flagellar protein FliS 12 115 5.0E-24 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BMD_3823 bc8a93dae580fbf18248f533c7a8cf4d 153 Pfam PF13994 PgaD-like protein 16 136 1.3E-7 T 13-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 BMD_3823 bc8a93dae580fbf18248f533c7a8cf4d 153 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 16 137 8.1E-11 T 13-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 BMD_1169 22950cede7e0639841aaee686427c587 236 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1169 22950cede7e0639841aaee686427c587 236 Gene3D G3DSA:3.40.50.300 1 235 1.9E-70 T 13-10-2018 BMD_1169 22950cede7e0639841aaee686427c587 236 SUPERFAMILY SSF52540 1 220 4.72E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1169 22950cede7e0639841aaee686427c587 236 SMART SM00382 26 206 2.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_1169 22950cede7e0639841aaee686427c587 236 Pfam PF00005 ABC transporter 17 158 1.3E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0224 84addc5cf8492d696b6f99815d4b867c 118 Pfam PF01740 STAS domain 12 94 4.6E-10 T 13-10-2018 IPR002645 STAS domain BMD_0224 84addc5cf8492d696b6f99815d4b867c 118 SUPERFAMILY SSF52091 3 111 2.35E-17 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0224 84addc5cf8492d696b6f99815d4b867c 118 Gene3D G3DSA:3.30.750.24 1 116 5.8E-30 T 13-10-2018 IPR036513 STAS domain superfamily BMD_0564 3a9ddada73d357f9289519cc3e951ee0 300 Pfam PF13556 PucR C-terminal helix-turn-helix domain 234 291 1.1E-16 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain BMD_0564 3a9ddada73d357f9289519cc3e951ee0 300 SUPERFAMILY SSF46689 237 269 1.79E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_0564 3a9ddada73d357f9289519cc3e951ee0 300 Gene3D G3DSA:1.10.10.2840 180 297 3.0E-16 T 13-10-2018 BMD_4642 b802898664262206c0c8cf74a082ddb3 149 PIRSF PIRSF025624 2 148 1.3E-58 T 13-10-2018 IPR008310 UPF0735 ACT domain-containing protein BMD_4642 b802898664262206c0c8cf74a082ddb3 149 Hamap MF_00707 UPF0735 ACT domain-containing protein . 4 148 31.673 T 13-10-2018 IPR008310 UPF0735 ACT domain-containing protein BMD_4642 b802898664262206c0c8cf74a082ddb3 149 SUPERFAMILY SSF55021 73 144 1.86E-9 T 13-10-2018 BMD_4642 b802898664262206c0c8cf74a082ddb3 149 Gene3D G3DSA:3.30.70.260 71 147 9.6E-6 T 13-10-2018 BMD_1622 f08eff50fad479369609131386492902 145 Gene3D G3DSA:3.90.79.10 4 143 2.9E-17 T 13-10-2018 BMD_1622 f08eff50fad479369609131386492902 145 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BMD_1622 f08eff50fad479369609131386492902 145 PRINTS PR00502 NUDIX hydrolase family signature 37 51 7.8E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_1622 f08eff50fad479369609131386492902 145 PRINTS PR00502 NUDIX hydrolase family signature 51 66 7.8E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_1622 f08eff50fad479369609131386492902 145 Pfam PF00293 NUDIX domain 16 136 3.9E-14 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_1622 f08eff50fad479369609131386492902 145 SUPERFAMILY SSF55811 5 135 7.45E-17 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_0985 f4fcb2c0c1fc81ed1db679797c9f8ecf 449 PIRSF PIRSF006060 1 445 1.2E-68 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0985 f4fcb2c0c1fc81ed1db679797c9f8ecf 449 Gene3D G3DSA:1.20.1740.10 6 445 2.0E-70 T 13-10-2018 BMD_0985 f4fcb2c0c1fc81ed1db679797c9f8ecf 449 Pfam PF00324 Amino acid permease 19 428 6.3E-40 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_4465 01b08fe220fd04dbb63734cef0135291 143 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 3 60 1.9E-25 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 BMD_4465 01b08fe220fd04dbb63734cef0135291 143 SUPERFAMILY SSF47979 63 128 6.67E-18 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 BMD_4465 01b08fe220fd04dbb63734cef0135291 143 SMART SM00529 24 123 1.0E-43 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 BMD_4465 01b08fe220fd04dbb63734cef0135291 143 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 63 123 1.3E-17 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 BMD_4465 01b08fe220fd04dbb63734cef0135291 143 Gene3D G3DSA:1.10.60.10 74 142 9.1E-32 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 BMD_4465 01b08fe220fd04dbb63734cef0135291 143 Gene3D G3DSA:1.10.10.10 2 73 7.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4465 01b08fe220fd04dbb63734cef0135291 143 SUPERFAMILY SSF46785 3 62 1.63E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4465 01b08fe220fd04dbb63734cef0135291 143 Hamap MF_00732 Transcriptional regulator MntR [mntR]. 1 139 45.06 T 13-10-2018 IPR022897 HTH-type transcription regulator MntR BMD_1255 f8e98b8d41427e2486989612e96443a5 221 PIRSF PIRSF006293 3 219 1.8E-79 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BMD_1255 f8e98b8d41427e2486989612e96443a5 221 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 7 205 6.6E-84 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BMD_1255 f8e98b8d41427e2486989612e96443a5 221 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 5 218 51.076 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BMD_1255 f8e98b8d41427e2486989612e96443a5 221 Gene3D G3DSA:3.40.50.620 3 218 2.8E-74 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_1255 f8e98b8d41427e2486989612e96443a5 221 Pfam PF06508 Queuosine biosynthesis protein QueC 6 212 2.4E-85 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BMD_1255 f8e98b8d41427e2486989612e96443a5 221 SUPERFAMILY SSF52402 4 212 2.65E-66 T 13-10-2018 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 Pfam PF00375 Sodium:dicarboxylate symporter family 15 402 3.3E-96 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 SUPERFAMILY SSF118215 14 402 3.66E-83 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 Gene3D G3DSA:1.10.3860.10 3 407 3.8E-80 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 7.8E-16 T 13-10-2018 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 7.8E-16 T 13-10-2018 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 7.8E-16 T 13-10-2018 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 PRINTS PR00173 Glutamate-aspartate symporter signature 76 101 7.8E-16 T 13-10-2018 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 PRINTS PR00173 Glutamate-aspartate symporter signature 9 29 7.8E-16 T 13-10-2018 BMD_2307 0ef3cceda171ebb4b0dbd008791e6ffc 420 PRINTS PR00173 Glutamate-aspartate symporter signature 357 377 7.8E-16 T 13-10-2018 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 Gene3D G3DSA:3.30.70.141 1 149 1.0E-63 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 Pfam PF00334 Nucleoside diphosphate kinase 3 136 4.2E-59 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 4.5E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 113 132 4.5E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 4.5E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 90 106 4.5E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 4.5E-52 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 SMART SM00562 2 139 6.8E-88 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 137 37.25 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 SUPERFAMILY SSF54919 2 149 4.98E-60 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BMD_4314 4e981f98a3cdc845c189ddd15f9e373b 149 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 113 121 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_3323 9365293a37bb2ce98de763f52e02f682 333 Gene3D G3DSA:3.40.190.10 34 306 1.8E-60 T 13-10-2018 BMD_3323 9365293a37bb2ce98de763f52e02f682 333 Gene3D G3DSA:1.10.8.450 248 287 1.8E-60 T 13-10-2018 BMD_3323 9365293a37bb2ce98de763f52e02f682 333 SUPERFAMILY SSF53850 31 258 1.37E-40 T 13-10-2018 BMD_3323 9365293a37bb2ce98de763f52e02f682 333 SMART SM00062 33 267 0.0023 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_3323 9365293a37bb2ce98de763f52e02f682 333 Pfam PF13379 NMT1-like family 32 259 1.4E-16 T 13-10-2018 BMD_3323 9365293a37bb2ce98de763f52e02f682 333 Gene3D G3DSA:3.40.190.10 112 212 1.8E-60 T 13-10-2018 BMD_3323 9365293a37bb2ce98de763f52e02f682 333 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 34 326 1.9E-52 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 BMD_0978 e05d25028038ca3bcdaef94f1c168e03 318 SUPERFAMILY SSF51569 5 302 1.83E-70 T 13-10-2018 BMD_0978 e05d25028038ca3bcdaef94f1c168e03 318 Gene3D G3DSA:3.20.20.70 5 303 5.7E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0978 e05d25028038ca3bcdaef94f1c168e03 318 Pfam PF00682 HMGL-like 12 284 1.1E-52 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 TIGRFAM TIGR02851 spore_V_T: stage V sporulation protein T 2 177 1.5E-89 T 13-10-2018 IPR014213 Sporulation stage V, protein T BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 Gene3D G3DSA:3.30.450.40 56 178 9.1E-46 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 9 51 1.1E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 SMART SM00966 8 52 1.1E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 49 1.2E-15 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 Pfam PF15714 Stage V sporulation protein T C-terminal, transcription factor 54 177 8.0E-45 T 13-10-2018 IPR039472 Sporulation stage V protein T, GAF domain BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 SUPERFAMILY SSF89447 1 52 9.03E-15 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 Gene3D G3DSA:2.10.260.10 1 49 3.8E-24 T 13-10-2018 BMD_0074 b3a9aa8dc2ff53d001b68de0c6cf4912 178 PIRSF PIRSF026579 1 178 5.1E-94 T 13-10-2018 IPR014213 Sporulation stage V, protein T BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 SUPERFAMILY SSF53697 244 600 7.33E-95 T 13-10-2018 BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 SUPERFAMILY SSF56235 2 235 1.29E-66 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 Pfam PF13522 Glutamine amidotransferase domain 57 192 5.4E-23 T 13-10-2018 BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 Pfam PF01380 SIS domain 289 413 4.5E-35 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 Pfam PF01380 SIS domain 457 582 1.0E-17 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 Gene3D G3DSA:3.40.50.10490 243 442 2.9E-65 T 13-10-2018 BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 600 1.7E-230 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 Gene3D G3DSA:3.60.20.10 2 239 2.9E-73 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 600 39.106 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 BMD_0192 0719aef06db32d314c623bd0f3e8b9d5 600 Gene3D G3DSA:3.40.50.10490 444 600 3.1E-61 T 13-10-2018 BMD_5239 b34be2af4f24f9c749a1afa7a24f79be 52 TIGRFAM TIGR04129 CxxH_BA5709: CxxH/CxxC protein, BA_5709 family 3 50 1.5E-17 T 13-10-2018 IPR025626 YyzF-like protein BMD_5239 b34be2af4f24f9c749a1afa7a24f79be 52 Pfam PF14116 YyzF-like protein 5 51 3.8E-19 T 13-10-2018 IPR025626 YyzF-like protein BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 SMART SM00829 10 346 6.2E-8 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 148 5.8E-28 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 Pfam PF00107 Zinc-binding dehydrogenase 190 312 6.2E-25 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 SUPERFAMILY SSF51735 153 316 2.93E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 Gene3D G3DSA:3.40.50.720 164 318 1.9E-138 T 13-10-2018 BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 Gene3D G3DSA:3.90.180.10 17 346 1.9E-138 T 13-10-2018 BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 SUPERFAMILY SSF50129 15 176 4.11E-54 T 13-10-2018 IPR011032 GroES-like superfamily BMD_3473 ad64a8101d4a47c7446ca23245dce615 351 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BMD_0258 3b57eb6330c40e57fb28ca583691907f 75 Pfam PF14146 Domain of unknown function (DUF4305) 18 54 9.7E-18 T 13-10-2018 IPR025426 Protein of unknown function DUF4305 BMD_0258 3b57eb6330c40e57fb28ca583691907f 75 ProDom PD053380 YDIK LIPOPROTEIN TRANSMEMBRANE MEMBRANE PRECURSOR PALMITATE SIGNAL 1 65 2.0E-5 T 13-10-2018 BMD_0440 92f6c984672251179e0dbbced5d64a14 221 Gene3D G3DSA:3.50.40.10 74 205 9.8E-8 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 BMD_0440 92f6c984672251179e0dbbced5d64a14 221 SUPERFAMILY SSF56037 61 217 3.66E-29 T 13-10-2018 BMD_0440 92f6c984672251179e0dbbced5d64a14 221 SMART SM00873 62 212 2.9E-7 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BMD_0440 92f6c984672251179e0dbbced5d64a14 221 Pfam PF03483 B3/4 domain 64 182 3.9E-17 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BMD_3580 06e12ffcd842cc082e8c5180450f5178 181 SUPERFAMILY SSF52374 14 163 1.1E-29 T 13-10-2018 BMD_3580 06e12ffcd842cc082e8c5180450f5178 181 Gene3D G3DSA:3.40.50.620 3 174 6.5E-51 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_3580 06e12ffcd842cc082e8c5180450f5178 181 Pfam PF06574 FAD synthetase 13 155 1.2E-41 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BMD_0170 aeb2c9d292ce88bb1d4201cc6e4fba9b 357 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 344 5.2E-84 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 BMD_0170 aeb2c9d292ce88bb1d4201cc6e4fba9b 357 Hamap MF_02040 Iron-sulfur cluster carrier protein. 98 345 33.751 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein BMD_0170 aeb2c9d292ce88bb1d4201cc6e4fba9b 357 SUPERFAMILY SSF52540 102 313 3.34E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0170 aeb2c9d292ce88bb1d4201cc6e4fba9b 357 ProSitePatterns PS01215 Mrp family signature. 210 226 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 BMD_0170 aeb2c9d292ce88bb1d4201cc6e4fba9b 357 Gene3D G3DSA:3.40.50.300 102 321 4.2E-65 T 13-10-2018 BMD_3338 719a142aa28e7d3d877a5c88375e2310 204 Pfam PF13302 Acetyltransferase (GNAT) domain 13 150 6.9E-19 T 13-10-2018 IPR000182 GNAT domain BMD_3338 719a142aa28e7d3d877a5c88375e2310 204 SUPERFAMILY SSF55729 5 176 5.93E-37 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3338 719a142aa28e7d3d877a5c88375e2310 204 Gene3D G3DSA:3.40.630.30 2 192 2.9E-44 T 13-10-2018 BMD_4508 d946cb3a97f13e5a6871d50017a5e159 161 Pfam PF04306 Protein of unknown function (DUF456) 21 159 2.0E-38 T 13-10-2018 IPR007403 Protein of unknown function DUF456 BMD_0452 9229f8f9470e4c1f8d66d5b3d166c551 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 2 273 17.81 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BMD_0452 9229f8f9470e4c1f8d66d5b3d166c551 274 Pfam PF02673 Bacitracin resistance protein BacA 7 268 1.7E-82 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BMD_0452 9229f8f9470e4c1f8d66d5b3d166c551 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 266 1.3E-92 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BMD_5128 11e9fdebb5a3b679b8ba151933a487a1 276 Pfam PF01551 Peptidase family M23 118 216 7.4E-24 T 13-10-2018 IPR016047 Peptidase M23 BMD_5128 11e9fdebb5a3b679b8ba151933a487a1 276 Gene3D G3DSA:2.70.70.10 75 233 1.9E-48 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_5128 11e9fdebb5a3b679b8ba151933a487a1 276 SUPERFAMILY SSF51261 110 219 2.35E-28 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_2834 83f28785a24d12e4a98858fdbcf48dd4 161 SUPERFAMILY SSF55729 1 133 3.01E-10 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2834 83f28785a24d12e4a98858fdbcf48dd4 161 Gene3D G3DSA:3.40.630.30 2 139 4.1E-9 T 13-10-2018 BMD_2834 83f28785a24d12e4a98858fdbcf48dd4 161 Pfam PF00583 Acetyltransferase (GNAT) family 50 132 9.9E-8 T 13-10-2018 IPR000182 GNAT domain BMD_3806 be454ffcbd9fb46167e426b0064d528f 49 Pfam PF13070 Protein of unknown function (DUF3934) 1 40 1.3E-22 T 13-10-2018 IPR025175 Protein of unknown function DUF3934 BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 SUPERFAMILY SSF55653 57 148 2.49E-29 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 4.5E-31 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 SUPERFAMILY SSF55658 1 56 3.84E-18 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 Gene3D G3DSA:3.40.5.10 1 52 1.5E-24 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.911 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 Gene3D G3DSA:3.10.430.100 60 149 2.2E-33 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 5.0E-51 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_5252 72f9eebdc42cda852f5f7774e1960ac4 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 9.6E-22 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_2354 21399121b44932856c85ccd39238403d 130 SUPERFAMILY SSF52833 9 97 1.23E-21 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_2354 21399121b44932856c85ccd39238403d 130 Gene3D G3DSA:3.40.30.10 8 103 1.7E-22 T 13-10-2018 BMD_2354 21399121b44932856c85ccd39238403d 130 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 8 88 6.1E-7 T 13-10-2018 BMD_0342 dbb45eac5ce02c7c760ed89547659d85 219 Pfam PF02607 B12 binding domain 5 73 3.0E-6 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_0342 dbb45eac5ce02c7c760ed89547659d85 219 Pfam PF02310 B12 binding domain 92 184 2.8E-15 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_0342 dbb45eac5ce02c7c760ed89547659d85 219 Gene3D G3DSA:3.40.50.280 86 213 4.3E-23 T 13-10-2018 BMD_0342 dbb45eac5ce02c7c760ed89547659d85 219 Gene3D G3DSA:1.10.1240.10 4 78 8.7E-9 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_0342 dbb45eac5ce02c7c760ed89547659d85 219 SUPERFAMILY SSF52242 88 185 1.44E-17 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_2135 b0f95129847242c588f1da45e5ddd0d9 346 Gene3D G3DSA:3.60.60.10 98 314 3.9E-33 T 13-10-2018 BMD_2135 b0f95129847242c588f1da45e5ddd0d9 346 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 106 303 1.1E-51 T 13-10-2018 IPR005079 Peptidase C45 BMD_2135 b0f95129847242c588f1da45e5ddd0d9 346 SUPERFAMILY SSF56235 106 234 1.77E-15 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_1642 bd30c08b6ce7c0377f0394f23bdd25a6 239 Gene3D G3DSA:3.40.50.2300 1 122 4.2E-37 T 13-10-2018 BMD_1642 bd30c08b6ce7c0377f0394f23bdd25a6 239 Pfam PF00072 Response regulator receiver domain 5 114 2.8E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1642 bd30c08b6ce7c0377f0394f23bdd25a6 239 Gene3D G3DSA:1.10.10.10 131 237 2.8E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1642 bd30c08b6ce7c0377f0394f23bdd25a6 239 SUPERFAMILY SSF52172 4 180 4.39E-40 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1642 bd30c08b6ce7c0377f0394f23bdd25a6 239 SMART SM00448 3 114 7.2E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1642 bd30c08b6ce7c0377f0394f23bdd25a6 239 SMART SM00862 153 228 1.1E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_1642 bd30c08b6ce7c0377f0394f23bdd25a6 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 227 4.6E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_4246 98565f28448bc4006b9733bf668ee994 304 Gene3D G3DSA:3.10.290.10 3 70 1.3E-19 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BMD_4246 98565f28448bc4006b9733bf668ee994 304 SMART SM00363 15 72 9.5E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4246 98565f28448bc4006b9733bf668ee994 304 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4246 98565f28448bc4006b9733bf668ee994 304 SUPERFAMILY SSF55120 73 300 2.33E-77 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4246 98565f28448bc4006b9733bf668ee994 304 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 298 1.5E-105 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_4246 98565f28448bc4006b9733bf668ee994 304 Pfam PF01479 S4 domain 15 61 6.8E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4246 98565f28448bc4006b9733bf668ee994 304 SUPERFAMILY SSF55174 15 101 4.71E-15 T 13-10-2018 BMD_4246 98565f28448bc4006b9733bf668ee994 304 Gene3D G3DSA:3.30.2350.10 81 303 4.7E-76 T 13-10-2018 BMD_4246 98565f28448bc4006b9733bf668ee994 304 Pfam PF00849 RNA pseudouridylate synthase 88 242 1.9E-36 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_3979 987fed3509602574d5ae4bacdbf69923 180 SUPERFAMILY SSF56784 2 175 2.38E-29 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3979 987fed3509602574d5ae4bacdbf69923 180 Gene3D G3DSA:1.10.40.40 15 64 7.1E-36 T 13-10-2018 BMD_3979 987fed3509602574d5ae4bacdbf69923 180 Gene3D G3DSA:3.40.50.1000 5 166 7.1E-36 T 13-10-2018 IPR023214 HAD superfamily BMD_3979 987fed3509602574d5ae4bacdbf69923 180 Pfam PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) 4 173 1.4E-47 T 13-10-2018 IPR010708 5'(3')-deoxyribonucleotidase GO:0008253|GO:0009264 Reactome: R-HSA-73621 BMD_4915 5e7aa5276a0922045b9a44bbddf8aa26 199 Gene3D G3DSA:3.40.50.300 3 199 4.4E-85 T 13-10-2018 BMD_4915 5e7aa5276a0922045b9a44bbddf8aa26 199 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 9 192 4.9E-88 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BMD_4915 5e7aa5276a0922045b9a44bbddf8aa26 199 SUPERFAMILY SSF52540 25 195 6.38E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4915 5e7aa5276a0922045b9a44bbddf8aa26 199 Pfam PF01583 Adenylylsulphate kinase 27 181 3.1E-74 T 13-10-2018 BMD_4915 5e7aa5276a0922045b9a44bbddf8aa26 199 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 25 197 39.3 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BMD_5236 d1c1b7997b945889a9bc1549e958be23 632 Pfam PF05787 Bacterial protein of unknown function (DUF839) 176 583 1.8E-23 T 13-10-2018 IPR008557 Protein of unknown function DUF839 BMD_4432 dc9a8292774cb0e342c559609a1ef7d3 242 SUPERFAMILY SSF51695 1 235 2.3E-70 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_4432 dc9a8292774cb0e342c559609a1ef7d3 242 Gene3D G3DSA:3.20.20.190 1 238 8.0E-79 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BMD_4432 dc9a8292774cb0e342c559609a1ef7d3 242 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 231 2.7E-46 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BMD_4531 d56067976bd3dc77788e473f64d817d4 267 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 266 58.464 T 13-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein BMD_4531 d56067976bd3dc77788e473f64d817d4 267 Pfam PF03618 Kinase/pyrophosphorylase 6 261 2.0E-94 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 BMD_4027 662529c84e298417553a787e30cc350b 421 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 19 408 1.0E-113 T 13-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase BMD_4027 662529c84e298417553a787e30cc350b 421 Pfam PF01546 Peptidase family M20/M25/M40 96 413 6.1E-35 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_4027 662529c84e298417553a787e30cc350b 421 SUPERFAMILY SSF55031 203 307 1.09E-13 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BMD_4027 662529c84e298417553a787e30cc350b 421 Pfam PF07687 Peptidase dimerisation domain 201 308 4.9E-16 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_4027 662529c84e298417553a787e30cc350b 421 Gene3D G3DSA:3.30.70.360 203 329 1.7E-139 T 13-10-2018 BMD_4027 662529c84e298417553a787e30cc350b 421 SUPERFAMILY SSF53187 5 417 8.0E-60 T 13-10-2018 BMD_4027 662529c84e298417553a787e30cc350b 421 Gene3D G3DSA:3.40.630.10 26 417 1.7E-139 T 13-10-2018 BMD_1023 eeb5f1faaae2e52cc58d77b5b9837434 362 Pfam PF05913 Bacterial protein of unknown function (DUF871) 3 359 2.1E-141 T 13-10-2018 IPR008589 Protein of unknown function DUF871, prokaryotic BMD_1023 eeb5f1faaae2e52cc58d77b5b9837434 362 SUPERFAMILY SSF50891 246 360 2.35E-39 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_1023 eeb5f1faaae2e52cc58d77b5b9837434 362 Gene3D G3DSA:2.40.100.10 243 361 2.5E-41 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_1023 eeb5f1faaae2e52cc58d77b5b9837434 362 Gene3D G3DSA:3.20.20.70 1 241 3.8E-88 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1023 eeb5f1faaae2e52cc58d77b5b9837434 362 SUPERFAMILY SSF51445 1 240 1.85E-90 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_5028 dc1ece5e7f42963368d4bda20ec3ecea 265 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 44 261 5.9E-68 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 BMD_5028 dc1ece5e7f42963368d4bda20ec3ecea 265 SUPERFAMILY SSF53850 39 263 5.44E-68 T 13-10-2018 BMD_5028 dc1ece5e7f42963368d4bda20ec3ecea 265 Gene3D G3DSA:3.40.190.10 41 262 9.0E-80 T 13-10-2018 BMD_5028 dc1ece5e7f42963368d4bda20ec3ecea 265 Gene3D G3DSA:3.40.190.10 118 225 9.0E-80 T 13-10-2018 BMD_5028 dc1ece5e7f42963368d4bda20ec3ecea 265 Pfam PF13531 Bacterial extracellular solute-binding protein 39 262 1.9E-52 T 13-10-2018 BMD_5028 dc1ece5e7f42963368d4bda20ec3ecea 265 PIRSF PIRSF004846 1 265 4.7E-90 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 BMD_2462 7b343b3372781f3e2a0fb201f13a175b 212 Pfam PF01614 Bacterial transcriptional regulator 79 203 1.1E-32 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal BMD_2462 7b343b3372781f3e2a0fb201f13a175b 212 Gene3D G3DSA:3.30.450.40 29 211 1.5E-52 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_2462 7b343b3372781f3e2a0fb201f13a175b 212 SUPERFAMILY SSF55781 19 208 6.08E-46 T 13-10-2018 BMD_3694 42fe20f205fcfde50fa43c9ac5659d70 248 Pfam PF12146 Serine aminopeptidase, S33 56 226 9.2E-15 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 BMD_3694 42fe20f205fcfde50fa43c9ac5659d70 248 SUPERFAMILY SSF53474 5 243 4.56E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3694 42fe20f205fcfde50fa43c9ac5659d70 248 Gene3D G3DSA:3.40.50.1820 2 246 9.2E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1179 585f798b06df39591f7253da316f9175 142 Pfam PF12788 YmaF family 46 130 1.5E-13 T 13-10-2018 IPR024307 YmaF BMD_0195 0ab7833229197b422365088a8a4915ce 444 Pfam PF03734 L,D-transpeptidase catalytic domain 291 434 7.4E-6 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BMD_0195 0ab7833229197b422365088a8a4915ce 444 Pfam PF08239 Bacterial SH3 domain 191 239 6.9E-16 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0195 0ab7833229197b422365088a8a4915ce 444 Pfam PF08239 Bacterial SH3 domain 120 169 9.5E-16 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0195 0ab7833229197b422365088a8a4915ce 444 Pfam PF08239 Bacterial SH3 domain 50 99 4.9E-13 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0195 0ab7833229197b422365088a8a4915ce 444 Gene3D G3DSA:2.30.30.40 40 103 1.9E-18 T 13-10-2018 BMD_0195 0ab7833229197b422365088a8a4915ce 444 Gene3D G3DSA:2.30.30.40 174 243 6.4E-21 T 13-10-2018 BMD_0195 0ab7833229197b422365088a8a4915ce 444 Gene3D G3DSA:2.30.30.40 104 172 3.5E-21 T 13-10-2018 BMD_0195 0ab7833229197b422365088a8a4915ce 444 SUPERFAMILY SSF50044 206 245 1.16E-5 T 13-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 BMD_0195 0ab7833229197b422365088a8a4915ce 444 SUPERFAMILY SSF50044 136 179 5.02E-6 T 13-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 BMD_0195 0ab7833229197b422365088a8a4915ce 444 SMART SM00287 181 242 1.8E-15 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0195 0ab7833229197b422365088a8a4915ce 444 SMART SM00287 41 102 3.6E-11 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0195 0ab7833229197b422365088a8a4915ce 444 SMART SM00287 111 172 4.4E-16 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_0195 0ab7833229197b422365088a8a4915ce 444 SUPERFAMILY SSF50044 67 110 5.12E-5 T 13-10-2018 IPR036028 SH3-like domain superfamily GO:0005515 BMD_3698 c40bf14689c836cac155e09a9021f9b2 280 Pfam PF11495 Archaeal transcriptional regulator TrmB 110 203 9.1E-9 T 13-10-2018 IPR021586 Transcription regulator TrmB, C-terminal BMD_3698 c40bf14689c836cac155e09a9021f9b2 280 SUPERFAMILY SSF56024 112 177 9.03E-7 T 13-10-2018 BMD_3698 c40bf14689c836cac155e09a9021f9b2 280 Pfam PF01978 Sugar-specific transcriptional regulator TrmB 9 76 1.3E-21 T 13-10-2018 IPR002831 Transcription regulator TrmB, N-terminal BMD_3698 c40bf14689c836cac155e09a9021f9b2 280 Gene3D G3DSA:1.10.10.10 2 102 1.6E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0079 f0ab805e7a9fa8f349d826f3a2a13428 207 Pfam PF09578 Spore cortex protein YabQ (Spore_YabQ) 11 87 2.0E-21 T 13-10-2018 IPR019074 Spore cortex biosynthesis protein, YabQ-like BMD_0079 f0ab805e7a9fa8f349d826f3a2a13428 207 TIGRFAM TIGR02893 spore_yabQ: spore cortex biosynthesis protein YabQ 2 129 4.6E-41 T 13-10-2018 IPR014242 Spore cortex biosynthesis protein, YabQ BMD_3584 15cd9324d11c75e4036130e56ddb52e1 129 SUPERFAMILY SSF69118 2 123 5.04E-35 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_3584 15cd9324d11c75e4036130e56ddb52e1 129 Gene3D G3DSA:1.20.1290.10 2 126 1.2E-41 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_3584 15cd9324d11c75e4036130e56ddb52e1 129 Pfam PF02627 Carboxymuconolactone decarboxylase family 32 116 2.7E-19 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BMD_3827 4dde8e022e32efdc33ac4b3262136123 241 SUPERFAMILY SSF89447 57 103 2.62E-9 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily BMD_3827 4dde8e022e32efdc33ac4b3262136123 241 Gene3D G3DSA:2.10.260.10 46 102 3.7E-15 T 13-10-2018 BMD_3827 4dde8e022e32efdc33ac4b3262136123 241 SUPERFAMILY SSF89447 173 219 1.31E-7 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily BMD_3827 4dde8e022e32efdc33ac4b3262136123 241 SMART SM00966 177 222 4.8E-4 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_3827 4dde8e022e32efdc33ac4b3262136123 241 SMART SM00966 61 104 7.5E-4 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_3827 4dde8e022e32efdc33ac4b3262136123 241 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 177 217 5.6E-9 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_3827 4dde8e022e32efdc33ac4b3262136123 241 Gene3D G3DSA:2.10.260.10 172 220 3.9E-9 T 13-10-2018 BMD_3284 427df5e9f4a7f014168ac9acbf723ac7 48 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 19 42 3.1E-12 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3284 427df5e9f4a7f014168ac9acbf723ac7 48 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 17 40 8.1E-6 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 77 8.0E-28 T 13-10-2018 BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 Gene3D G3DSA:3.30.70.1150 84 165 1.9E-27 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 Pfam PF10369 Small subunit of acetolactate synthase 85 158 1.3E-27 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 SUPERFAMILY SSF55021 2 77 1.57E-19 T 13-10-2018 BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.3E-62 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 Gene3D G3DSA:3.30.70.260 1 80 6.7E-30 T 13-10-2018 BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 SUPERFAMILY SSF55021 80 160 1.05E-24 T 13-10-2018 BMD_4685 22b5e582524183677d1581b3adbe2d2c 170 Pfam PF01842 ACT domain 5 68 4.8E-13 T 13-10-2018 IPR002912 ACT domain BMD_5256 f7cac5d13b38356e5ec3ebf8913dcd8c 166 Gene3D G3DSA:2.40.50.140 1 110 4.0E-47 T 13-10-2018 BMD_5256 f7cac5d13b38356e5ec3ebf8913dcd8c 166 SUPERFAMILY SSF50249 1 166 1.99E-59 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_5256 f7cac5d13b38356e5ec3ebf8913dcd8c 166 Pfam PF00436 Single-strand binding protein family 2 103 4.2E-39 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 BMD_5256 f7cac5d13b38356e5ec3ebf8913dcd8c 166 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 166 2.1E-50 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BMD_5256 f7cac5d13b38356e5ec3ebf8913dcd8c 166 Hamap MF_00984 Single-stranded DNA-binding protein. 2 107 37.641 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BMD_3109 124a854a85bb8ccedce26fcd280c80c9 540 Gene3D G3DSA:1.20.1740.10 1 460 4.4E-78 T 13-10-2018 BMD_3109 124a854a85bb8ccedce26fcd280c80c9 540 Pfam PF13520 Amino acid permease 9 425 3.4E-48 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3109 124a854a85bb8ccedce26fcd280c80c9 540 PIRSF PIRSF006060 1 535 6.6E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3199 cff43b85d8d001c1393e9a88ed856c86 184 Pfam PF13242 HAD-hyrolase-like 89 164 7.0E-17 T 13-10-2018 BMD_3199 cff43b85d8d001c1393e9a88ed856c86 184 PIRSF PIRSF004682 1 170 3.2E-38 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 BMD_3199 cff43b85d8d001c1393e9a88ed856c86 184 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 133 4.2E-27 T 13-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 BMD_3199 cff43b85d8d001c1393e9a88ed856c86 184 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 136 1.3E-22 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 BMD_3199 cff43b85d8d001c1393e9a88ed856c86 184 SUPERFAMILY SSF56784 1 168 6.89E-36 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3199 cff43b85d8d001c1393e9a88ed856c86 184 Gene3D G3DSA:3.40.50.1000 3 171 6.0E-43 T 13-10-2018 IPR023214 HAD superfamily BMD_0989 a926d23049e856f560292a174e5de145 328 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 5.9E-27 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BMD_0989 a926d23049e856f560292a174e5de145 328 SUPERFAMILY SSF55347 127 291 4.25E-28 T 13-10-2018 BMD_0989 a926d23049e856f560292a174e5de145 328 SUPERFAMILY SSF51735 2 152 1.14E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0989 a926d23049e856f560292a174e5de145 328 Gene3D G3DSA:3.40.50.720 1 133 9.7E-39 T 13-10-2018 BMD_0989 a926d23049e856f560292a174e5de145 328 Gene3D G3DSA:3.30.360.10 134 327 7.7E-61 T 13-10-2018 BMD_5022 144a61a1c11381fd497c626febaedb5a 189 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 1 189 21.174 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 BMD_5022 144a61a1c11381fd497c626febaedb5a 189 Pfam PF12804 MobA-like NTP transferase domain 5 159 2.8E-33 T 13-10-2018 IPR025877 MobA-like NTP transferase BMD_5022 144a61a1c11381fd497c626febaedb5a 189 SUPERFAMILY SSF53448 1 187 2.71E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_5022 144a61a1c11381fd497c626febaedb5a 189 Gene3D G3DSA:3.90.550.10 1 189 4.9E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0385 368c7236d740f2429783e53455e31e9f 372 Pfam PF13353 4Fe-4S single cluster domain 38 114 9.2E-6 T 13-10-2018 BMD_0385 368c7236d740f2429783e53455e31e9f 372 Pfam PF08756 YfkB-like domain 218 366 9.8E-78 T 13-10-2018 IPR014866 YfkB-like domain BMD_0385 368c7236d740f2429783e53455e31e9f 372 Pfam PF04055 Radical SAM superfamily 34 184 4.8E-11 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_0385 368c7236d740f2429783e53455e31e9f 372 Gene3D G3DSA:3.20.20.70 20 310 1.5E-22 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0385 368c7236d740f2429783e53455e31e9f 372 TIGRFAM TIGR04478 rSAM_YfkAB: radical SAM/CxCxxxxC motif protein YfkAB 6 366 2.7E-194 T 13-10-2018 IPR031004 Radical SAM/CxCxxxxC motif protein YfkAB BMD_0385 368c7236d740f2429783e53455e31e9f 372 SUPERFAMILY SSF102114 31 324 2.75E-26 T 13-10-2018 BMD_0590 e8c46cee3d19ecc70cf8b2d0706b7400 147 Pfam PF13673 Acetyltransferase (GNAT) domain 45 146 6.5E-16 T 13-10-2018 IPR000182 GNAT domain BMD_0590 e8c46cee3d19ecc70cf8b2d0706b7400 147 Gene3D G3DSA:3.40.630.30 1 146 6.3E-40 T 13-10-2018 BMD_0590 e8c46cee3d19ecc70cf8b2d0706b7400 147 SUPERFAMILY SSF55729 1 146 5.49E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4921 781a0b91d7d5c61e20034ed6df641fe0 262 Gene3D G3DSA:3.40.50.720 111 252 5.7E-24 T 13-10-2018 BMD_4921 781a0b91d7d5c61e20034ed6df641fe0 262 SUPERFAMILY SSF51735 114 251 6.79E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4921 781a0b91d7d5c61e20034ed6df641fe0 262 Pfam PF07885 Ion channel 24 95 6.8E-14 T 13-10-2018 IPR013099 Potassium channel domain BMD_4921 781a0b91d7d5c61e20034ed6df641fe0 262 Gene3D G3DSA:1.10.287.70 3 97 1.9E-18 T 13-10-2018 BMD_4921 781a0b91d7d5c61e20034ed6df641fe0 262 SUPERFAMILY SSF81324 8 136 4.06E-22 T 13-10-2018 BMD_4921 781a0b91d7d5c61e20034ed6df641fe0 262 Pfam PF02254 TrkA-N domain 116 238 7.2E-11 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BMD_2507 c56538ebe8297f7c5a6bd9886956664b 118 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 118 4.6E-37 T 13-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BMD_2507 c56538ebe8297f7c5a6bd9886956664b 118 Pfam PF00576 HIUase/Transthyretin family 4 117 3.2E-33 T 13-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 BMD_2507 c56538ebe8297f7c5a6bd9886956664b 118 Gene3D G3DSA:2.60.40.180 1 118 7.6E-38 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 BMD_2507 c56538ebe8297f7c5a6bd9886956664b 118 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 13-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 BMD_2507 c56538ebe8297f7c5a6bd9886956664b 118 SUPERFAMILY SSF49472 2 118 5.76E-36 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 BMD_2507 c56538ebe8297f7c5a6bd9886956664b 118 ProSitePatterns PS00769 Transthyretin signature 2. 101 113 - T 13-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 BMD_4213 b3c9eb60448520c2db8ec0603eb08ca9 295 TIGRFAM TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit 1 292 6.4E-148 T 13-10-2018 IPR004642 Serine dehydratase, alpha subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BMD_4213 b3c9eb60448520c2db8ec0603eb08ca9 295 Pfam PF03313 Serine dehydratase alpha chain 15 274 1.3E-76 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit BMD_4861 35bbc489adc2a1fe461a55e07f5a92ca 375 SMART SM00833 236 351 2.9E-51 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BMD_4861 35bbc489adc2a1fe461a55e07f5a92ca 375 Gene3D G3DSA:3.30.1220.10 218 351 2.1E-6 T 13-10-2018 IPR036627 CobW-like, C-terminal domain superfamily BMD_4861 35bbc489adc2a1fe461a55e07f5a92ca 375 SUPERFAMILY SSF52540 1 282 1.17E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4861 35bbc489adc2a1fe461a55e07f5a92ca 375 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 1 190 2.3E-45 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain BMD_4861 35bbc489adc2a1fe461a55e07f5a92ca 375 Gene3D G3DSA:3.40.50.300 1 208 3.2E-57 T 13-10-2018 BMD_4861 35bbc489adc2a1fe461a55e07f5a92ca 375 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 236 351 1.7E-28 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BMD_4937 14cea8123a79c57b179594014fed2824 390 Pfam PF00155 Aminotransferase class I and II 38 385 7.8E-45 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BMD_4937 14cea8123a79c57b179594014fed2824 390 SUPERFAMILY SSF53383 4 386 3.19E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4937 14cea8123a79c57b179594014fed2824 390 Gene3D G3DSA:3.40.640.10 69 292 3.2E-154 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4937 14cea8123a79c57b179594014fed2824 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 6 389 2.6E-153 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 BMD_4937 14cea8123a79c57b179594014fed2824 390 Gene3D G3DSA:3.90.1150.10 14 385 3.2E-154 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 Gene3D G3DSA:3.30.565.10 311 449 7.3E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 397 3.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 411 3.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 448 3.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 3.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 SMART SM00388 239 305 2.7E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 Pfam PF00672 HAMP domain 186 234 8.6E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 SMART SM00387 348 449 1.1E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 SUPERFAMILY SSF55874 309 449 2.88E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 SUPERFAMILY SSF47384 224 303 1.8E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 SMART SM00304 186 238 4.9E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 Gene3D G3DSA:1.10.287.130 235 304 1.1E-14 T 13-10-2018 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 SUPERFAMILY SSF158472 186 234 2.88E-8 T 13-10-2018 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 448 2.7E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 303 3.0E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3901 cae8e8acbdcaeb1ff76386882fe38d5f 449 Gene3D G3DSA:1.10.8.500 185 234 1.5E-8 T 13-10-2018 BMD_2327 167e6948aeeaebcc44b2d3b920a72418 327 SUPERFAMILY SSF50129 1 147 2.74E-40 T 13-10-2018 IPR011032 GroES-like superfamily BMD_2327 167e6948aeeaebcc44b2d3b920a72418 327 Gene3D G3DSA:3.40.50.720 123 295 4.5E-107 T 13-10-2018 BMD_2327 167e6948aeeaebcc44b2d3b920a72418 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 8.0E-13 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_2327 167e6948aeeaebcc44b2d3b920a72418 327 Pfam PF00107 Zinc-binding dehydrogenase 154 276 9.3E-39 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_2327 167e6948aeeaebcc44b2d3b920a72418 327 SUPERFAMILY SSF51735 114 273 4.06E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2327 167e6948aeeaebcc44b2d3b920a72418 327 Gene3D G3DSA:3.90.180.10 8 323 4.5E-107 T 13-10-2018 BMD_2327 167e6948aeeaebcc44b2d3b920a72418 327 SMART SM00829 10 325 1.8E-52 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BMD_3930 486b88708f037639c14fe680c56dc720 640 PIRSF PIRSF005091 1 619 9.6E-195 T 13-10-2018 IPR012160 Lipoteichoic acid synthase-like BMD_3930 486b88708f037639c14fe680c56dc720 640 Gene3D G3DSA:3.40.720.10 237 546 6.9E-79 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BMD_3930 486b88708f037639c14fe680c56dc720 640 Pfam PF00884 Sulfatase 245 536 1.1E-32 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BMD_3930 486b88708f037639c14fe680c56dc720 640 SUPERFAMILY SSF53649 243 634 2.62E-78 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BMD_0843 7e80c8881dc72b95186c513384cf799e 72 Gene3D G3DSA:1.10.260.40 2 67 1.8E-22 T 13-10-2018 BMD_0843 7e80c8881dc72b95186c513384cf799e 72 SUPERFAMILY SSF47413 3 67 1.13E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_0843 7e80c8881dc72b95186c513384cf799e 72 Pfam PF01381 Helix-turn-helix 7 60 6.6E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_0843 7e80c8881dc72b95186c513384cf799e 72 SMART SM00530 6 61 4.9E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_0147 0a4f01868f9dadf10dd3fa6e665930c1 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0147 0a4f01868f9dadf10dd3fa6e665930c1 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 25.615 T 13-10-2018 IPR023053 Ribosomal protein S14, type Z BMD_0147 0a4f01868f9dadf10dd3fa6e665930c1 61 Gene3D G3DSA:4.10.830.10 1 61 5.7E-30 T 13-10-2018 BMD_0147 0a4f01868f9dadf10dd3fa6e665930c1 61 Pfam PF00253 Ribosomal protein S14p/S29e 10 60 9.8E-24 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0147 0a4f01868f9dadf10dd3fa6e665930c1 61 SUPERFAMILY SSF57716 3 61 1.85E-21 T 13-10-2018 BMD_4357 0799b44fcc613d357a7afb0d7ca9c230 173 SUPERFAMILY SSF52833 9 170 1.67E-45 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4357 0799b44fcc613d357a7afb0d7ca9c230 173 Pfam PF00578 AhpC/TSA family 37 152 1.6E-37 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_4357 0799b44fcc613d357a7afb0d7ca9c230 173 Gene3D G3DSA:3.40.30.10 28 173 1.7E-50 T 13-10-2018 BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 6 303 7.0E-162 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 PIRSF PIRSF001478 1 474 7.4E-239 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 Pfam PF11762 L-arabinose isomerase C-terminal domain 360 473 3.6E-43 T 13-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 SUPERFAMILY SSF53743 1 327 2.51E-123 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 Pfam PF02610 L-arabinose isomerase 6 357 2.2E-169 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 Gene3D G3DSA:3.40.50.10940 1 175 5.8E-86 T 13-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 SUPERFAMILY SSF50443 327 474 2.48E-57 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal BMD_3530 60cbb7418eaf8a86e739ebb7e64407c9 474 Hamap MF_00519 L-arabinose isomerase [araA]. 1 474 60.984 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BMD_0690 3eacea6cdc77ad026077c2b8eb9aa9b5 507 TIGRFAM TIGR01239 galT_2: galactose-1-phosphate uridylyltransferase 9 503 2.2E-214 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0690 3eacea6cdc77ad026077c2b8eb9aa9b5 507 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 249 438 8.4E-37 T 13-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 BMD_0690 3eacea6cdc77ad026077c2b8eb9aa9b5 507 Hamap MF_00571 Galactose-1-phosphate uridylyltransferase [galT]. 1 507 251.098 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0690 3eacea6cdc77ad026077c2b8eb9aa9b5 507 ProSitePatterns PS01163 Galactose-1-phosphate uridyl transferase family 2 signature. 262 279 - T 13-10-2018 IPR023425 Galactose-1-phosphate uridyl transferase, class II, conserved site GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0690 3eacea6cdc77ad026077c2b8eb9aa9b5 507 PIRSF PIRSF006005 3 507 1.6E-221 T 13-10-2018 IPR000766 Galactose-1-phosphate uridyl transferase, class II GO:0005737|GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BMD_0690 3eacea6cdc77ad026077c2b8eb9aa9b5 507 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 55 234 7.2E-36 T 13-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 BMD_2809 b53873e54084fa2e538197717b9d9e9f 180 Gene3D G3DSA:1.20.1250.20 1 178 7.4E-11 T 13-10-2018 BMD_2809 b53873e54084fa2e538197717b9d9e9f 180 Pfam PF05977 Transmembrane secretion effector 5 166 7.5E-7 T 13-10-2018 IPR010290 Transmembrane secretion effector BMD_2809 b53873e54084fa2e538197717b9d9e9f 180 SUPERFAMILY SSF103473 6 164 8.37E-15 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2670 f306f613d7d608f6b754fb2e5c94915d 644 Pfam PF14449 Pre-toxin TG 256 327 8.1E-19 T 13-10-2018 IPR027797 Pre-toxin TG domain BMD_2670 f306f613d7d608f6b754fb2e5c94915d 644 Pfam PF04740 LXG domain of WXG superfamily 3 199 7.3E-39 T 13-10-2018 IPR006829 LXG domain BMD_1355 a18f5ddabf9abc3b546d756a0a5b493e 206 SUPERFAMILY SSF81452 21 203 3.01E-55 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1355 a18f5ddabf9abc3b546d756a0a5b493e 206 Pfam PF00510 Cytochrome c oxidase subunit III 28 203 1.1E-17 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1355 a18f5ddabf9abc3b546d756a0a5b493e 206 Gene3D G3DSA:1.20.120.80 21 205 4.3E-54 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1102 dfe3056e6d9cb19bcd88ac7be9d58623 303 ProDom PD113106 YVBI TRANSMEMBRANE MEMBRANE YEBC YBEC 1 259 1.0E-16 T 13-10-2018 BMD_2247 f82f13e4fc8d503a81bfbe34dea8bbe3 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 115 2.5E-7 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_2247 f82f13e4fc8d503a81bfbe34dea8bbe3 120 Gene3D G3DSA:3.10.180.10 6 118 2.4E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2247 f82f13e4fc8d503a81bfbe34dea8bbe3 120 SUPERFAMILY SSF54593 1 119 1.75E-18 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3300 f2b66518d5e71b6b871e7069e7381b97 255 Pfam PF06386 Gas vesicle synthesis protein GvpL/GvpF 8 247 1.8E-53 T 13-10-2018 IPR009430 Gas vesicle protein GvpL/GvpF GO:0031411|GO:0031412 BMD_0356 d17c0026462718ba25d102b32d0b4963 384 Pfam PF04231 Endonuclease I 167 377 1.6E-46 T 13-10-2018 IPR007346 Endonuclease I GO:0004518 BMD_0356 d17c0026462718ba25d102b32d0b4963 384 SUPERFAMILY SSF54060 164 377 5.77E-61 T 13-10-2018 BMD_0230 11bbfaa7c1550d2f3a083be00806e745 201 SMART SM00331 9 198 2.1E-36 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0230 11bbfaa7c1550d2f3a083be00806e745 201 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 35 192 1.3E-11 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0230 11bbfaa7c1550d2f3a083be00806e745 201 SUPERFAMILY SSF81606 12 195 2.75E-16 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_0230 11bbfaa7c1550d2f3a083be00806e745 201 Gene3D G3DSA:3.60.40.10 4 198 4.8E-44 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BMD_4198 891caa643ac0ea55a703319ea59315bf 170 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 3 168 24.448 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BMD_4198 891caa643ac0ea55a703319ea59315bf 170 SUPERFAMILY SSF50346 99 168 4.71E-21 T 13-10-2018 IPR011033 PRC-barrel-like superfamily BMD_4198 891caa643ac0ea55a703319ea59315bf 170 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 3 168 2.9E-53 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BMD_4198 891caa643ac0ea55a703319ea59315bf 170 SUPERFAMILY SSF50447 2 91 1.48E-21 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BMD_4198 891caa643ac0ea55a703319ea59315bf 170 Gene3D G3DSA:2.40.30.60 4 91 8.3E-22 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 BMD_4198 891caa643ac0ea55a703319ea59315bf 170 Pfam PF05239 PRC-barrel domain 97 169 1.3E-13 T 13-10-2018 IPR027275 PRC-barrel domain BMD_4198 891caa643ac0ea55a703319ea59315bf 170 Gene3D G3DSA:2.30.30.240 94 170 2.8E-22 T 13-10-2018 BMD_4198 891caa643ac0ea55a703319ea59315bf 170 Pfam PF01782 RimM N-terminal domain 5 90 1.0E-23 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 BMD_1961 5979db092e02955d04c0e5cff4d6d53d 306 SMART SM00833 217 302 1.5E-10 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BMD_1961 5979db092e02955d04c0e5cff4d6d53d 306 Gene3D G3DSA:3.30.1220.10 199 302 2.0E-9 T 13-10-2018 IPR036627 CobW-like, C-terminal domain superfamily BMD_1961 5979db092e02955d04c0e5cff4d6d53d 306 SUPERFAMILY SSF52540 2 182 2.89E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1961 5979db092e02955d04c0e5cff4d6d53d 306 SUPERFAMILY SSF90002 218 298 3.79E-12 T 13-10-2018 BMD_1961 5979db092e02955d04c0e5cff4d6d53d 306 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 218 298 3.6E-15 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BMD_1961 5979db092e02955d04c0e5cff4d6d53d 306 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 181 3.7E-44 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain BMD_1961 5979db092e02955d04c0e5cff4d6d53d 306 Gene3D G3DSA:3.40.50.300 1 198 1.4E-51 T 13-10-2018 BMD_2074 79fd60ba3faeb90cb60a28d61afe8361 224 SMART SM00862 144 221 3.6E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2074 79fd60ba3faeb90cb60a28d61afe8361 224 Gene3D G3DSA:3.40.50.2300 1 123 9.5E-38 T 13-10-2018 BMD_2074 79fd60ba3faeb90cb60a28d61afe8361 224 SUPERFAMILY SSF52172 1 172 3.27E-42 T 13-10-2018 IPR011006 CheY-like superfamily BMD_2074 79fd60ba3faeb90cb60a28d61afe8361 224 SMART SM00448 2 112 9.5E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2074 79fd60ba3faeb90cb60a28d61afe8361 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 220 3.0E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_2074 79fd60ba3faeb90cb60a28d61afe8361 224 Pfam PF00072 Response regulator receiver domain 4 113 8.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_2074 79fd60ba3faeb90cb60a28d61afe8361 224 Gene3D G3DSA:1.10.10.10 124 223 3.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2116 a50702790c444ed6733ee508fe4ddf8c 214 Pfam PF02581 Thiamine monophosphate synthase 12 195 5.3E-61 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2116 a50702790c444ed6733ee508fe4ddf8c 214 SUPERFAMILY SSF51391 8 211 5.23E-67 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2116 a50702790c444ed6733ee508fe4ddf8c 214 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 10 213 28.187 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_2116 a50702790c444ed6733ee508fe4ddf8c 214 Gene3D G3DSA:3.20.20.70 1 214 1.6E-76 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2116 a50702790c444ed6733ee508fe4ddf8c 214 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 12 208 2.5E-66 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_5130 c5474dd5ca7c69d79d10a3ac73c520d3 434 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 416 7.1E-178 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_5130 c5474dd5ca7c69d79d10a3ac73c520d3 434 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 2.8E-118 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BMD_5130 c5474dd5ca7c69d79d10a3ac73c520d3 434 SUPERFAMILY SSF55205 2 418 3.27E-144 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BMD_5130 c5474dd5ca7c69d79d10a3ac73c520d3 434 Gene3D G3DSA:3.65.10.10 7 414 2.6E-176 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_5130 c5474dd5ca7c69d79d10a3ac73c520d3 434 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 45.625 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_5130 c5474dd5ca7c69d79d10a3ac73c520d3 434 Gene3D G3DSA:3.65.10.10 21 231 2.6E-176 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_1519 53e6ca3055dd2c91d20510221733fdfd 213 Gene3D G3DSA:3.20.20.70 1 211 1.5E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1519 53e6ca3055dd2c91d20510221733fdfd 213 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 2 202 1.1E-29 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_1519 53e6ca3055dd2c91d20510221733fdfd 213 SMART SM00934 2 203 3.1E-38 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_1519 53e6ca3055dd2c91d20510221733fdfd 213 TIGRFAM TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase 2 206 6.4E-85 T 13-10-2018 IPR017553 3-hexulose-6-phosphate synthase GO:0005975|GO:0043801 KEGG: 00030+4.1.2.43|KEGG: 00680+4.1.2.43|MetaCyc: PWY-1861|MetaCyc: PWY-7796 BMD_1519 53e6ca3055dd2c91d20510221733fdfd 213 SUPERFAMILY SSF51366 3 209 2.05E-41 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_2023 d8c0dbbb5d060d14631a351fd210693c 236 SUPERFAMILY SSF161098 15 213 1.57E-34 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2023 d8c0dbbb5d060d14631a351fd210693c 236 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 228 9.0E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2023 d8c0dbbb5d060d14631a351fd210693c 236 Gene3D G3DSA:1.10.3720.10 2 229 5.6E-43 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2023 d8c0dbbb5d060d14631a351fd210693c 236 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 122 6.7E-16 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 Gene3D G3DSA:3.30.450.40 1 159 6.2E-71 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 Gene3D G3DSA:1.10.10.10 160 259 4.8E-47 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 SUPERFAMILY SSF46785 167 256 2.77E-42 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 Pfam PF06018 CodY GAF-like domain 3 178 2.0E-81 T 13-10-2018 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 PIRSF PIRSF011572 1 257 5.3E-123 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 TIGRFAM TIGR02787 codY_Gpos: GTP-sensing transcriptional pleiotropic repressor CodY 3 253 1.4E-125 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 Pfam PF08222 CodY helix-turn-helix domain 198 257 2.0E-37 T 13-10-2018 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal BMD_4184 5ae5b4e2020806d34ebd62289cddf573 259 Hamap MF_00621 GTP-sensing transcriptional pleiotropic repressor CodY [codY]. 1 259 150.036 T 13-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 BMD_1943 232ff676374c3e6920a6d9705089270d 374 SUPERFAMILY SSF110836 2 89 3.79E-24 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily BMD_1943 232ff676374c3e6920a6d9705089270d 374 SUPERFAMILY SSF48371 202 372 6.17E-33 T 13-10-2018 IPR016024 Armadillo-type fold BMD_1943 232ff676374c3e6920a6d9705089270d 374 Gene3D G3DSA:3.30.1370.70 1 94 3.0E-29 T 13-10-2018 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily BMD_1943 232ff676374c3e6920a6d9705089270d 374 Pfam PF13646 HEAT repeats 267 343 1.1E-12 T 13-10-2018 BMD_1943 232ff676374c3e6920a6d9705089270d 374 Gene3D G3DSA:1.25.10.10 201 371 9.0E-26 T 13-10-2018 IPR011989 Armadillo-like helical BMD_1943 232ff676374c3e6920a6d9705089270d 374 Pfam PF13769 Virulence factor 108 188 1.6E-32 T 13-10-2018 IPR025989 Virulence factor domain BMD_1943 232ff676374c3e6920a6d9705089270d 374 Pfam PF08712 Scaffold protein Nfu/NifU N terminal 6 88 6.3E-20 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal BMD_1943 232ff676374c3e6920a6d9705089270d 374 SMART SM00567 E-Z type HEAT repeats 219 246 690.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 BMD_1943 232ff676374c3e6920a6d9705089270d 374 SMART SM00567 E-Z type HEAT repeats 248 277 3.2 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 BMD_1943 232ff676374c3e6920a6d9705089270d 374 SMART SM00567 E-Z type HEAT repeats 279 308 22.0 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 BMD_1943 232ff676374c3e6920a6d9705089270d 374 SMART SM00567 E-Z type HEAT repeats 310 339 2.4E-4 T 13-10-2018 IPR004155 PBS lyase HEAT-like repeat Reactome: R-HSA-204626 BMD_1943 232ff676374c3e6920a6d9705089270d 374 SMART SM00932 4 90 2.8E-29 T 13-10-2018 IPR014824 Scaffold protein Nfu/NifU, N-terminal BMD_2679 6a156fb0c102c3ac00a811aaa56cdd0a 419 Gene3D G3DSA:3.30.1870.10 63 145 1.7E-64 T 13-10-2018 BMD_2679 6a156fb0c102c3ac00a811aaa56cdd0a 419 Gene3D G3DSA:3.40.1660.10 16 412 1.7E-64 T 13-10-2018 BMD_2679 6a156fb0c102c3ac00a811aaa56cdd0a 419 SUPERFAMILY SSF159501 7 417 5.06E-113 T 13-10-2018 BMD_2679 6a156fb0c102c3ac00a811aaa56cdd0a 419 PIRSF PIRSF036794 3 419 2.7E-84 T 13-10-2018 IPR014622 Uncharacterised conserved protein UCP036794, erythromycin esterase-type BMD_2679 6a156fb0c102c3ac00a811aaa56cdd0a 419 Gene3D G3DSA:1.20.1440.30 146 274 1.7E-64 T 13-10-2018 BMD_2679 6a156fb0c102c3ac00a811aaa56cdd0a 419 Pfam PF05139 Erythromycin esterase 61 411 3.2E-105 T 13-10-2018 IPR007815 Erythromycin esterase GO:0046677 BMD_2947 df79a13cf99dbaf6f15d13c708653994 320 Gene3D G3DSA:2.40.260.10 24 238 2.4E-34 T 13-10-2018 IPR023365 Sortase domain superfamily BMD_2947 df79a13cf99dbaf6f15d13c708653994 320 SUPERFAMILY SSF49265 240 318 3.37E-5 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 BMD_2947 df79a13cf99dbaf6f15d13c708653994 320 Gene3D G3DSA:2.60.40.10 239 320 1.2E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_2947 df79a13cf99dbaf6f15d13c708653994 320 Pfam PF04203 Sortase family 87 225 2.6E-20 T 13-10-2018 IPR005754 Sortase family BMD_2947 df79a13cf99dbaf6f15d13c708653994 320 SUPERFAMILY SSF63817 85 225 1.05E-17 T 13-10-2018 IPR023365 Sortase domain superfamily BMD_2617 96d06f16807b0a5822aeaecce932bb49 150 Pfam PF07849 Protein of unknown function (DUF1641) 115 133 6.2E-5 T 13-10-2018 IPR012440 Protein of unknown function DUF1641 BMD_3127 bff3c0481478c7a85149796c0ce349e5 249 Pfam PF13411 MerR HTH family regulatory protein 4 70 2.4E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3127 bff3c0481478c7a85149796c0ce349e5 249 SMART SM00422 4 72 3.5E-25 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3127 bff3c0481478c7a85149796c0ce349e5 249 Gene3D G3DSA:1.10.490.50 158 248 4.2E-21 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain BMD_3127 bff3c0481478c7a85149796c0ce349e5 249 SUPERFAMILY SSF89082 159 247 7.98E-28 T 13-10-2018 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain BMD_3127 bff3c0481478c7a85149796c0ce349e5 249 SUPERFAMILY SSF46955 5 115 1.17E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_3127 bff3c0481478c7a85149796c0ce349e5 249 Pfam PF07739 TipAS antibiotic-recognition domain 130 243 2.3E-34 T 13-10-2018 IPR012925 TipAS antibiotic-recognition domain BMD_3127 bff3c0481478c7a85149796c0ce349e5 249 Gene3D G3DSA:1.10.1660.10 2 139 4.0E-48 T 13-10-2018 BMD_2020 f5d5168706c42db488f1ad14ce119d2d 88 SUPERFAMILY SSF52833 4 83 1.68E-13 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_2020 f5d5168706c42db488f1ad14ce119d2d 88 Gene3D G3DSA:3.40.30.10 4 84 7.8E-12 T 13-10-2018 BMD_2020 f5d5168706c42db488f1ad14ce119d2d 88 Pfam PF00462 Glutaredoxin 7 60 6.2E-9 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BMD_1435 3ecf48cf8d71dbfa082c11013f79883d 474 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 21 468 8.4E-203 T 13-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 BMD_1435 3ecf48cf8d71dbfa082c11013f79883d 474 Pfam PF00171 Aldehyde dehydrogenase family 12 469 1.6E-179 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_1435 3ecf48cf8d71dbfa082c11013f79883d 474 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_1435 3ecf48cf8d71dbfa082c11013f79883d 474 Gene3D G3DSA:3.40.605.10 12 465 2.4E-186 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_1435 3ecf48cf8d71dbfa082c11013f79883d 474 PIRSF PIRSF036492 25 471 1.4E-89 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 BMD_1435 3ecf48cf8d71dbfa082c11013f79883d 474 SUPERFAMILY SSF53720 2 473 1.31E-176 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_1435 3ecf48cf8d71dbfa082c11013f79883d 474 Gene3D G3DSA:3.40.309.10 252 442 2.4E-186 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_1838 e234e267cb2508b85a270e21f3652b2f 160 Gene3D G3DSA:3.90.960.10 2 159 5.9E-51 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BMD_1838 e234e267cb2508b85a270e21f3652b2f 160 PIRSF PIRSF006181 3 160 5.7E-57 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BMD_1838 e234e267cb2508b85a270e21f3652b2f 160 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 8 157 2.2E-52 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BMD_1838 e234e267cb2508b85a270e21f3652b2f 160 SUPERFAMILY SSF55826 8 157 1.96E-40 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BMD_1838 e234e267cb2508b85a270e21f3652b2f 160 Pfam PF04073 Aminoacyl-tRNA editing domain 35 147 1.2E-24 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BMD_1749 acb85fc1a2c673d2df9c4273125b086c 369 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 5 362 2.1E-72 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_1749 acb85fc1a2c673d2df9c4273125b086c 369 Pfam PF03845 Spore germination protein 5 325 4.2E-88 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_2049 a745c4905f5620bc7e864cf3b2a0c672 48 Pfam PF10058 Predicted integral membrane zinc-ribbon metal-binding protein 6 39 1.5E-5 T 13-10-2018 IPR019273 Lunapark domain BMD_1302 e1ce078d2fabf44bd3b26719940cf2be 288 SUPERFAMILY SSF56300 59 286 6.28E-34 T 13-10-2018 BMD_1302 e1ce078d2fabf44bd3b26719940cf2be 288 Pfam PF00149 Calcineurin-like phosphoesterase 59 224 6.6E-8 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BMD_1302 e1ce078d2fabf44bd3b26719940cf2be 288 Gene3D G3DSA:3.60.21.10 58 258 3.9E-20 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_2633 2394e7d017f4d57f044b462bebd73968 334 Pfam PF00296 Luciferase-like monooxygenase 26 307 5.9E-38 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_2633 2394e7d017f4d57f044b462bebd73968 334 SUPERFAMILY SSF51679 9 330 6.02E-89 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2633 2394e7d017f4d57f044b462bebd73968 334 Gene3D G3DSA:3.20.20.30 5 334 2.4E-102 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2633 2394e7d017f4d57f044b462bebd73968 334 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 10 331 3.4E-141 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 BMD_4757 424da9cfd3c83efbb9a0328907d05826 153 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 3 149 18.968 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame BMD_4757 424da9cfd3c83efbb9a0328907d05826 153 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 21 131 1.0E-29 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame BMD_4757 424da9cfd3c83efbb9a0328907d05826 153 Pfam PF04284 Protein of unknown function (DUF441) 7 146 3.6E-48 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame BMD_2042 6e85ff7ca122dfc7e9cafd9f76ecc6e9 305 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 25 300 2.9E-81 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BMD_2042 6e85ff7ca122dfc7e9cafd9f76ecc6e9 305 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 79 101 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site BMD_2042 6e85ff7ca122dfc7e9cafd9f76ecc6e9 305 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 19 303 17.314 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BMD_2042 6e85ff7ca122dfc7e9cafd9f76ecc6e9 305 Pfam PF01040 UbiA prenyltransferase family 55 286 1.4E-52 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BMD_2042 6e85ff7ca122dfc7e9cafd9f76ecc6e9 305 Gene3D G3DSA:1.10.357.140 32 190 3.8E-16 T 13-10-2018 BMD_1973 c2dfa2c0112a53c4e03d9c02f9d3ed1c 126 ProDom PD077583 REPLICATION TRANSCRIPTION DNA-BINDING TERMINATOR REGULATION TERMINATION 3D-STRUCTURE 10 123 8.0E-50 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 BMD_1973 c2dfa2c0112a53c4e03d9c02f9d3ed1c 126 PIRSF PIRSF021424 1 123 4.3E-67 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 BMD_1973 c2dfa2c0112a53c4e03d9c02f9d3ed1c 126 Gene3D G3DSA:1.10.10.10 1 123 4.4E-46 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1973 c2dfa2c0112a53c4e03d9c02f9d3ed1c 126 SUPERFAMILY SSF46785 5 104 9.75E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1973 c2dfa2c0112a53c4e03d9c02f9d3ed1c 126 Pfam PF02334 Replication terminator protein 2 123 4.2E-57 T 13-10-2018 IPR003432 Replication terminator protein GO:0003677|GO:0006274 BMD_5203 225dee79546bd939c107e693aa6a758e 235 Gene3D G3DSA:1.10.150.240 19 95 2.1E-62 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_5203 225dee79546bd939c107e693aa6a758e 235 TIGRFAM TIGR01990 bPGM: beta-phosphoglucomutase 6 192 2.3E-74 T 13-10-2018 IPR010972 Beta-phosphoglucomutase GO:0000287|GO:0005975|GO:0008801 KEGG: 00500+5.4.2.6|MetaCyc: PWY-2721|MetaCyc: PWY-2722|MetaCyc: PWY-7459 BMD_5203 225dee79546bd939c107e693aa6a758e 235 Gene3D G3DSA:3.40.50.1000 7 200 2.1E-62 T 13-10-2018 IPR023214 HAD superfamily BMD_5203 225dee79546bd939c107e693aa6a758e 235 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 7 191 7.7E-61 T 13-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase BMD_5203 225dee79546bd939c107e693aa6a758e 235 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 71 191 6.0E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_5203 225dee79546bd939c107e693aa6a758e 235 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 191 2.6E-26 T 13-10-2018 BMD_5203 225dee79546bd939c107e693aa6a758e 235 SUPERFAMILY SSF56784 7 210 3.19E-44 T 13-10-2018 IPR036412 HAD-like superfamily BMD_4616 c98f9086e11f7acc7dda4e1ecde4f923 153 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.6 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BMD_4616 c98f9086e11f7acc7dda4e1ecde4f923 153 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 7.8E-62 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BMD_4616 c98f9086e11f7acc7dda4e1ecde4f923 153 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 2.5E-57 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BMD_4616 c98f9086e11f7acc7dda4e1ecde4f923 153 SUPERFAMILY SSF69500 1 144 1.03E-58 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily BMD_4616 c98f9086e11f7acc7dda4e1ecde4f923 153 Gene3D G3DSA:3.50.80.10 1 148 5.7E-60 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily BMD_2907 4887fac17365a4ac5885a275fc99b8bb 72 Pfam PF10676 Spore germination protein gerPA/gerPF 1 71 1.4E-23 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF BMD_3405 104726fe3b1ffe92775ecf553554b6c1 467 SUPERFAMILY SSF103473 15 435 1.18E-70 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3405 104726fe3b1ffe92775ecf553554b6c1 467 Pfam PF07690 Major Facilitator Superfamily 31 361 6.1E-37 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3405 104726fe3b1ffe92775ecf553554b6c1 467 ProSitePatterns PS00217 Sugar transport proteins signature 2. 130 155 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_3405 104726fe3b1ffe92775ecf553554b6c1 467 Gene3D G3DSA:1.20.1250.20 17 439 9.2E-68 T 13-10-2018 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 Gene3D G3DSA:3.30.420.40 1 250 1.3E-78 T 13-10-2018 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 TIGRFAM TIGR01314 gntK_FGGY: gluconate kinase 5 509 5.8E-248 T 13-10-2018 IPR006002 Gluconate kinase GO:0019521|GO:0046316 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 249 2.0E-71 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 SUPERFAMILY SSF53067 252 500 3.08E-68 T 13-10-2018 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 366 386 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 SUPERFAMILY SSF53067 4 251 8.1E-69 T 13-10-2018 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 453 3.5E-36 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 Gene3D G3DSA:3.30.420.40 251 513 1.6E-90 T 13-10-2018 BMD_0754 f3a089e27f7895512f54f17bad35d07e 513 PIRSF PIRSF000538 3 506 1.3E-140 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BMD_5085 86938c1a523fae4b54203f79a923d9e6 134 Pfam PF13673 Acetyltransferase (GNAT) domain 37 132 2.3E-11 T 13-10-2018 IPR000182 GNAT domain BMD_5085 86938c1a523fae4b54203f79a923d9e6 134 Gene3D G3DSA:3.40.630.30 1 132 7.2E-25 T 13-10-2018 BMD_5085 86938c1a523fae4b54203f79a923d9e6 134 SUPERFAMILY SSF55729 9 119 1.08E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0443 d98b6fe299a611f98f2d0363d0576ff0 152 Gene3D G3DSA:3.40.1280.10 1 152 1.4E-64 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BMD_0443 d98b6fe299a611f98f2d0363d0576ff0 152 SUPERFAMILY SSF75217 1 150 6.15E-43 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases BMD_0443 d98b6fe299a611f98f2d0363d0576ff0 152 PIRSF PIRSF029256 1 152 2.2E-66 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BMD_0443 d98b6fe299a611f98f2d0363d0576ff0 152 Pfam PF00588 SpoU rRNA Methylase family 1 140 8.5E-34 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BMD_0443 d98b6fe299a611f98f2d0363d0576ff0 152 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 1 149 32.036 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BMD_0443 d98b6fe299a611f98f2d0363d0576ff0 152 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 151 4.4E-69 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BMD_2661 92e05ccfda49de9eecb1f3f8b6e8acf6 464 PIRSF PIRSF006060 1 451 1.0E-69 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2661 92e05ccfda49de9eecb1f3f8b6e8acf6 464 Gene3D G3DSA:1.20.1740.10 9 441 7.8E-70 T 13-10-2018 BMD_2661 92e05ccfda49de9eecb1f3f8b6e8acf6 464 Pfam PF00324 Amino acid permease 16 376 2.9E-36 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_3028 7e8689fdcbeb856bfe840f9b24c94aff 285 Pfam PF02153 Prephenate dehydrogenase 17 273 2.7E-76 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 BMD_3028 7e8689fdcbeb856bfe840f9b24c94aff 285 Gene3D G3DSA:1.10.3660.10 178 284 7.9E-36 T 13-10-2018 BMD_3028 7e8689fdcbeb856bfe840f9b24c94aff 285 SUPERFAMILY SSF51735 4 170 1.84E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3028 7e8689fdcbeb856bfe840f9b24c94aff 285 SUPERFAMILY SSF48179 174 283 4.08E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_3028 7e8689fdcbeb856bfe840f9b24c94aff 285 Gene3D G3DSA:3.40.50.720 1 177 1.1E-49 T 13-10-2018 BMD_3326 02f806f5301052731539aab65b2a5eb0 476 ProSitePatterns PS00217 Sugar transport proteins signature 2. 127 152 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_3326 02f806f5301052731539aab65b2a5eb0 476 SUPERFAMILY SSF103473 19 459 3.14E-71 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3326 02f806f5301052731539aab65b2a5eb0 476 Gene3D G3DSA:1.20.1250.20 25 451 7.3E-68 T 13-10-2018 BMD_3326 02f806f5301052731539aab65b2a5eb0 476 Pfam PF00083 Sugar (and other) transporter 63 452 1.1E-35 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 Pfam PF12833 Helix-turn-helix domain 191 267 3.4E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 Pfam PF02311 AraC-like ligand binding domain 16 147 7.0E-20 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 SMART SM00342 184 266 1.0E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 SUPERFAMILY SSF51215 23 152 3.79E-24 T 13-10-2018 IPR037923 Transcription regulator HTH-like BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 Gene3D G3DSA:1.10.10.60 160 217 2.8E-11 T 13-10-2018 BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 SUPERFAMILY SSF46689 220 267 1.21E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 Gene3D G3DSA:2.60.120.10 22 100 6.6E-8 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 SUPERFAMILY SSF46689 170 217 9.41E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3256 97f0a17ec61c3e5146fe1b2fc5d26031 277 Gene3D G3DSA:1.10.10.60 218 273 4.8E-15 T 13-10-2018 BMD_0942 4a2b864b2eccffa9cc40be5611fc28a3 124 Pfam PF09350 Domain of unknown function (DUF1992) 7 73 5.2E-21 T 13-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain BMD_0665 432e2bf25743e23c3bb1af67399fe53a 472 Gene3D G3DSA:1.20.1740.10 8 471 2.2E-64 T 13-10-2018 BMD_0665 432e2bf25743e23c3bb1af67399fe53a 472 ProSitePatterns PS00218 Amino acid permeases signature. 43 74 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_0665 432e2bf25743e23c3bb1af67399fe53a 472 Pfam PF00324 Amino acid permease 18 462 1.8E-131 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_0665 432e2bf25743e23c3bb1af67399fe53a 472 PIRSF PIRSF006060 1 470 6.5E-80 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1384 9ceeaaade5fed3e94cfe5ab5072e085d 199 TIGRFAM TIGR00648 recU: recombination protein U 29 197 5.1E-78 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 BMD_1384 9ceeaaade5fed3e94cfe5ab5072e085d 199 SUPERFAMILY SSF52980 32 198 4.29E-69 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BMD_1384 9ceeaaade5fed3e94cfe5ab5072e085d 199 Pfam PF03838 Recombination protein U 30 195 5.0E-67 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 BMD_1384 9ceeaaade5fed3e94cfe5ab5072e085d 199 PIRSF PIRSF037785 22 199 8.6E-79 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 BMD_1384 9ceeaaade5fed3e94cfe5ab5072e085d 199 Gene3D G3DSA:3.40.1350.10 33 199 1.6E-68 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 BMD_1384 9ceeaaade5fed3e94cfe5ab5072e085d 199 Hamap MF_00130 Holliday junction resolvase RecU [recU]. 1 199 100.573 T 13-10-2018 IPR004612 Holliday junction resolvase RecU GO:0005737|GO:0006281|GO:0006310 BMD_0653 da7aba8a8cafdf063abed9384d0b0df6 390 Pfam PF04235 Protein of unknown function (DUF418) 233 388 1.4E-36 T 13-10-2018 IPR007349 Domain of unknown function DUF418 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 ProSitePatterns PS00788 Chorismate synthase signature 2. 131 147 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 Hamap MF_00300 Chorismate synthase [aroC]. 1 372 36.97 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 TIGRFAM TIGR00033 aroC: chorismate synthase 1 370 3.2E-134 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 SUPERFAMILY SSF103263 1 389 4.71E-153 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 Gene3D G3DSA:3.60.150.10 1 389 5.3E-158 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 PIRSF PIRSF001456 1 387 2.4E-135 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 ProSitePatterns PS00789 Chorismate synthase signature 3. 339 355 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 ProSitePatterns PS00787 Chorismate synthase signature 1. 7 22 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_4312 7bdfb7dfd16890e79ada7ded177cacbd 390 Pfam PF01264 Chorismate synthase 1 364 9.4E-128 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BMD_0714 c2b15345666d06a9aa98baa4564f13e7 132 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 114 7.2E-38 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR BMD_0714 c2b15345666d06a9aa98baa4564f13e7 132 SUPERFAMILY SSF52833 1 129 4.16E-40 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_0714 c2b15345666d06a9aa98baa4564f13e7 132 Pfam PF03960 ArsC family 5 113 2.9E-24 T 13-10-2018 IPR006660 Arsenate reductase-like BMD_0714 c2b15345666d06a9aa98baa4564f13e7 132 Gene3D G3DSA:3.40.30.10 1 131 2.8E-48 T 13-10-2018 BMD_0714 c2b15345666d06a9aa98baa4564f13e7 132 Hamap MF_01132 Regulatory protein Spx [spxA]. 1 131 37.766 T 13-10-2018 IPR023731 Regulatory protein Spx GO:0045892 BMD_0780 6360d994c8ff64bccb6ff44f876902a7 393 Gene3D G3DSA:1.20.1250.20 3 184 4.0E-44 T 13-10-2018 BMD_0780 6360d994c8ff64bccb6ff44f876902a7 393 Gene3D G3DSA:1.20.1250.20 193 388 2.6E-51 T 13-10-2018 BMD_0780 6360d994c8ff64bccb6ff44f876902a7 393 Pfam PF07690 Major Facilitator Superfamily 15 343 6.0E-37 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_0780 6360d994c8ff64bccb6ff44f876902a7 393 SUPERFAMILY SSF103473 3 379 6.93E-60 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2107 832e4d2c886d3765ad2bbac1d8370744 202 SUPERFAMILY SSF50486 9 201 2.75E-64 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 BMD_2107 832e4d2c886d3765ad2bbac1d8370744 202 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 12 199 5.1E-70 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BMD_2107 832e4d2c886d3765ad2bbac1d8370744 202 Gene3D G3DSA:3.10.300.10 7 202 1.0E-64 T 13-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BMD_2107 832e4d2c886d3765ad2bbac1d8370744 202 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 15 196 4.5E-59 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BMD_2107 832e4d2c886d3765ad2bbac1d8370744 202 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 13 199 32.972 T 13-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BMD_0708 6d5d83cb8a354a731edf997ef1762d56 308 Gene3D G3DSA:1.10.3720.10 95 308 4.8E-23 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0708 6d5d83cb8a354a731edf997ef1762d56 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 124 308 2.9E-34 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0708 6d5d83cb8a354a731edf997ef1762d56 308 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 31 83 1.4E-16 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BMD_0708 6d5d83cb8a354a731edf997ef1762d56 308 SUPERFAMILY SSF161098 102 288 6.28E-28 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1124 0f520db60443395d77df821bbbb962d7 236 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 32 234 3.6E-75 T 13-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 BMD_1124 0f520db60443395d77df821bbbb962d7 236 Gene3D G3DSA:3.40.50.300 1 236 3.6E-75 T 13-10-2018 BMD_1124 0f520db60443395d77df821bbbb962d7 236 SUPERFAMILY SSF52540 52 228 6.19E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_1124 0f520db60443395d77df821bbbb962d7 236 Pfam PF13614 AAA domain 63 181 1.3E-15 T 13-10-2018 IPR025669 AAA domain BMD_0118 ab967f9140ea4982be1d344783abadbf 49 Gene3D G3DSA:2.20.28.120 1 49 4.7E-20 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0118 ab967f9140ea4982be1d344783abadbf 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 18.79 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0118 ab967f9140ea4982be1d344783abadbf 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 49 4.6E-20 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_0118 ab967f9140ea4982be1d344783abadbf 49 SUPERFAMILY SSF57829 1 49 3.54E-17 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BMD_0118 ab967f9140ea4982be1d344783abadbf 49 Pfam PF00471 Ribosomal protein L33 3 49 1.8E-20 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 2.0E-29 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 112 194 7.5E-13 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 274 34.058 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 276 4.7E-87 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 Gene3D G3DSA:3.40.50.10860 5 263 1.8E-95 T 13-10-2018 BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 SUPERFAMILY SSF53223 3 101 2.07E-33 T 13-10-2018 BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 Gene3D G3DSA:3.40.50.720 101 242 1.8E-95 T 13-10-2018 BMD_4570 d5eb5e6fa25dbf9263fbb2b02b61e283 279 SUPERFAMILY SSF51735 102 274 6.89E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 SUPERFAMILY SSF47384 105 179 1.49E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 SMART SM00388 119 181 9.9E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 226 332 2.0E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 Gene3D G3DSA:1.10.287.130 71 181 1.2E-6 T 13-10-2018 BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 Gene3D G3DSA:3.30.565.10 196 339 7.5E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 280 290 1.6E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 314 1.6E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 PRINTS PR00344 Bacterial sensor protein C-terminal signature 262 276 1.6E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 SMART SM00387 225 336 5.6E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3862 6fa350e090ac5064a14b46788444fdc0 344 SUPERFAMILY SSF55874 172 332 2.1E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1610 b19865f6d660d1644ce892b35f0ce77b 149 Gene3D G3DSA:3.40.630.30 5 143 6.6E-23 T 13-10-2018 BMD_1610 b19865f6d660d1644ce892b35f0ce77b 149 SUPERFAMILY SSF55729 8 132 6.86E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1610 b19865f6d660d1644ce892b35f0ce77b 149 Pfam PF13673 Acetyltransferase (GNAT) domain 47 134 2.1E-15 T 13-10-2018 IPR000182 GNAT domain BMD_3602 fd2407f97a6774506b7eee92772fa364 451 Pfam PF02386 Cation transport protein 42 430 6.7E-61 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 BMD_3602 fd2407f97a6774506b7eee92772fa364 451 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 35 421 1.3E-118 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 BMD_2572 406ff66851800e6fcc97caf7411436c9 165 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 16 161 3.3E-33 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 BMD_2572 406ff66851800e6fcc97caf7411436c9 165 Gene3D G3DSA:1.20.120.1760 1 164 7.8E-15 T 13-10-2018 BMD_2572 406ff66851800e6fcc97caf7411436c9 165 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 52 74 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BMD_2572 406ff66851800e6fcc97caf7411436c9 165 Pfam PF01066 CDP-alcohol phosphatidyltransferase 10 74 8.4E-16 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BMD_3708 ee66bb8aeadd155d558d6137e09b885e 76 Gene3D G3DSA:1.10.40.30 11 62 2.0E-22 T 13-10-2018 BMD_3708 ee66bb8aeadd155d558d6137e09b885e 76 SUPERFAMILY SSF48557 6 65 1.13E-10 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 BMD_3708 ee66bb8aeadd155d558d6137e09b885e 76 Pfam PF10415 Fumarase C C-terminus 11 64 2.3E-20 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BMD_4819 d8efdd21c512241677fc15fa7409a157 285 SUPERFAMILY SSF56281 3 262 4.32E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4819 d8efdd21c512241677fc15fa7409a157 285 Pfam PF00753 Metallo-beta-lactamase superfamily 54 245 1.2E-15 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4819 d8efdd21c512241677fc15fa7409a157 285 SMART SM00849 50 257 8.4E-18 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4819 d8efdd21c512241677fc15fa7409a157 285 Gene3D G3DSA:3.60.15.10 5 269 3.1E-86 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4743 b650d594ede824aaafc6e3811132073f 153 Pfam PF03477 ATP cone domain 50 136 1.3E-18 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 BMD_4743 b650d594ede824aaafc6e3811132073f 153 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 84.975 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BMD_4743 b650d594ede824aaafc6e3811132073f 153 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 2.5E-71 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BMD_0415 380123c335d08952b68bdf59b613f756 130 Pfam PF07885 Ion channel 44 127 1.6E-10 T 13-10-2018 IPR013099 Potassium channel domain BMD_0415 380123c335d08952b68bdf59b613f756 130 SUPERFAMILY SSF81324 35 126 1.96E-13 T 13-10-2018 BMD_0415 380123c335d08952b68bdf59b613f756 130 Gene3D G3DSA:1.10.287.70 26 130 1.2E-12 T 13-10-2018 BMD_3568 8fc514face243beb03e73df2c51500f4 284 SUPERFAMILY SSF140959 27 284 2.35E-98 T 13-10-2018 IPR037217 Tryptophan/Indoleamine 2,3-dioxygenase-like GO:0019441|GO:0020037|GO:0046872 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BMD_3568 8fc514face243beb03e73df2c51500f4 284 Gene3D G3DSA:1.20.58.480 25 284 5.9E-97 T 13-10-2018 BMD_3568 8fc514face243beb03e73df2c51500f4 284 Pfam PF03301 Tryptophan 2,3-dioxygenase 166 283 1.6E-25 T 13-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BMD_3568 8fc514face243beb03e73df2c51500f4 284 Pfam PF03301 Tryptophan 2,3-dioxygenase 20 153 3.8E-43 T 13-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BMD_3568 8fc514face243beb03e73df2c51500f4 284 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 21 284 39.888 T 13-10-2018 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 BMD_3568 8fc514face243beb03e73df2c51500f4 284 TIGRFAM TIGR03036 trp_2_3_diox: tryptophan 2,3-dioxygenase 21 284 1.1E-126 T 13-10-2018 IPR017485 Tryptophan 2,3-dioxygenase, bacterial GO:0004833|GO:0019441 KEGG: 00380+1.13.11.11 BMD_4346 80a33e929288d56bc3c24ce82d7f37bb 221 Pfam PF02517 CAAX protease self-immunity 119 200 1.0E-8 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BMD_3201 5dc81b034cd87e2b0e0b979f1f5fb992 177 SUPERFAMILY SSF48498 87 173 2.78E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_3201 5dc81b034cd87e2b0e0b979f1f5fb992 177 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 1.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3201 5dc81b034cd87e2b0e0b979f1f5fb992 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 2.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3201 5dc81b034cd87e2b0e0b979f1f5fb992 177 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 2.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3201 5dc81b034cd87e2b0e0b979f1f5fb992 177 Gene3D G3DSA:1.10.357.10 1 176 9.3E-52 T 13-10-2018 BMD_3201 5dc81b034cd87e2b0e0b979f1f5fb992 177 SUPERFAMILY SSF46689 3 72 8.74E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 Gene3D G3DSA:3.40.50.300 1 197 5.5E-65 T 13-10-2018 BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 Pfam PF00271 Helicase conserved C-terminal domain 224 321 9.8E-17 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 Pfam PF00270 DEAD/DEAH box helicase 20 148 5.2E-21 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 Pfam PF16124 RecQ zinc-binding 424 470 6.0E-8 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 6 347 1.1E-102 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 SMART SM00490 241 323 8.5E-22 T 13-10-2018 IPR001650 Helicase, C-terminal BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 130 139 - T 13-10-2018 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 SUPERFAMILY SSF52540 56 342 1.8E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4347 7d72fe5221fc068ead28f849fe6ea912 505 SMART SM00487 12 207 9.0E-30 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BMD_3825 205eff530f9dd50dda4f00d85420bfd9 172 SUPERFAMILY SSF47240 1 160 3.08E-45 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_3825 205eff530f9dd50dda4f00d85420bfd9 172 Gene3D G3DSA:1.20.1260.10 1 171 1.9E-41 T 13-10-2018 IPR012347 Ferritin-like BMD_3825 205eff530f9dd50dda4f00d85420bfd9 172 Pfam PF00210 Ferritin-like domain 7 141 2.2E-33 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BMD_1237 5e65c0191a9cdd20185d4e448ef16869 171 SUPERFAMILY SSF51182 10 170 8.32E-31 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_1237 5e65c0191a9cdd20185d4e448ef16869 171 Gene3D G3DSA:2.60.120.10 1 170 1.7E-58 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_1237 5e65c0191a9cdd20185d4e448ef16869 171 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 171 26.877 T 13-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 BMD_1237 5e65c0191a9cdd20185d4e448ef16869 171 Pfam PF03079 ARD/ARD' family 5 168 5.0E-44 T 13-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BMD_4422 17b345b3b57a4daf41b5c0b0fda9f143 678 Gene3D G3DSA:3.40.50.280 562 675 4.1E-6 T 13-10-2018 BMD_4422 17b345b3b57a4daf41b5c0b0fda9f143 678 SUPERFAMILY SSF51703 7 472 2.2E-117 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_4422 17b345b3b57a4daf41b5c0b0fda9f143 678 Pfam PF01642 Methylmalonyl-CoA mutase 34 480 2.8E-123 T 13-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_4422 17b345b3b57a4daf41b5c0b0fda9f143 678 SUPERFAMILY SSF52242 531 673 9.42E-9 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_4422 17b345b3b57a4daf41b5c0b0fda9f143 678 Gene3D G3DSA:3.20.20.240 3 528 2.1E-134 T 13-10-2018 BMD_4883 0c0e3e966dc3cd8b3880e9e3b6ed40cc 341 Pfam PF00483 Nucleotidyl transferase 16 148 6.3E-10 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_4883 0c0e3e966dc3cd8b3880e9e3b6ed40cc 341 SUPERFAMILY SSF53448 16 283 2.91E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4883 0c0e3e966dc3cd8b3880e9e3b6ed40cc 341 Gene3D G3DSA:3.90.550.10 1 152 4.4E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4883 0c0e3e966dc3cd8b3880e9e3b6ed40cc 341 Gene3D G3DSA:3.90.550.10 153 235 4.5E-9 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4883 0c0e3e966dc3cd8b3880e9e3b6ed40cc 341 SUPERFAMILY SSF51161 251 323 1.91E-13 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_4883 0c0e3e966dc3cd8b3880e9e3b6ed40cc 341 Gene3D G3DSA:2.160.10.10 236 334 5.8E-26 T 13-10-2018 BMD_0199 15c4c9ae47fd9125708cd59f90fb4b2e 161 SUPERFAMILY SSF54593 3 152 4.56E-22 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_0199 15c4c9ae47fd9125708cd59f90fb4b2e 161 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 147 1.0E-13 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BMD_0199 15c4c9ae47fd9125708cd59f90fb4b2e 161 Gene3D G3DSA:3.10.180.10 1 154 1.2E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1497 3546df12f4ffae10ad017df205370c6a 246 SUPERFAMILY SSF52833 1 212 2.7E-51 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_1497 3546df12f4ffae10ad017df205370c6a 246 Pfam PF01323 DSBA-like thioredoxin domain 2 206 9.9E-49 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 BMD_1497 3546df12f4ffae10ad017df205370c6a 246 Gene3D G3DSA:3.40.30.10 1 209 7.6E-83 T 13-10-2018 BMD_0488 bb4373b9f8c334992fda28843d56f5ca 443 SUPERFAMILY SSF53474 202 392 1.86E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0488 bb4373b9f8c334992fda28843d56f5ca 443 Pfam PF00326 Prolyl oligopeptidase family 280 328 6.7E-8 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BMD_0488 bb4373b9f8c334992fda28843d56f5ca 443 Gene3D G3DSA:3.40.50.1820 190 440 5.5E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0488 bb4373b9f8c334992fda28843d56f5ca 443 Gene3D G3DSA:2.60.40.2180 33 182 2.2E-14 T 13-10-2018 BMD_1199 30e8c1bca5378d7967c6d447a2933639 166 SUPERFAMILY SSF46955 3 68 7.94E-5 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_1199 30e8c1bca5378d7967c6d447a2933639 166 Hamap MF_01170 Chromosome-anchoring protein RacA [racA]. 3 166 19.248 T 13-10-2018 IPR023522 Chromosome-anchoring protein RacA BMD_1199 30e8c1bca5378d7967c6d447a2933639 166 Pfam PF13411 MerR HTH family regulatory protein 4 69 3.0E-6 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_1199 30e8c1bca5378d7967c6d447a2933639 166 Gene3D G3DSA:1.10.1660.10 1 65 1.0E-16 T 13-10-2018 BMD_2177 708a33160023eda20310fbd3910b227e 146 TIGRFAM TIGR03646 YtoQ_fam: YtoQ family protein 3 146 6.1E-71 T 13-10-2018 IPR019884 YtoQ family protein BMD_2177 708a33160023eda20310fbd3910b227e 146 Pfam PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ 6 145 3.4E-67 T 13-10-2018 IPR019884 YtoQ family protein BMD_4753 90ae8ef7814a39df766d6e7293fe3200 159 Gene3D G3DSA:3.10.129.10 11 155 2.0E-29 T 13-10-2018 BMD_4753 90ae8ef7814a39df766d6e7293fe3200 159 SUPERFAMILY SSF54637 10 147 4.69E-27 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_4753 90ae8ef7814a39df766d6e7293fe3200 159 Pfam PF01575 MaoC like domain 26 129 2.9E-10 T 13-10-2018 IPR002539 MaoC-like dehydratase domain BMD_3586 5816a6658e480ec4c3627c46a66e59ee 326 SUPERFAMILY SSF53613 10 322 6.24E-78 T 13-10-2018 IPR029056 Ribokinase-like BMD_3586 5816a6658e480ec4c3627c46a66e59ee 326 Pfam PF00294 pfkB family carbohydrate kinase 11 317 1.3E-73 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_3586 5816a6658e480ec4c3627c46a66e59ee 326 Gene3D G3DSA:3.40.1190.20 6 325 4.3E-86 T 13-10-2018 IPR029056 Ribokinase-like BMD_3586 5816a6658e480ec4c3627c46a66e59ee 326 PRINTS PR00990 Ribokinase signature 191 206 3.9E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_3586 5816a6658e480ec4c3627c46a66e59ee 326 PRINTS PR00990 Ribokinase signature 230 241 3.9E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_3586 5816a6658e480ec4c3627c46a66e59ee 326 PRINTS PR00990 Ribokinase signature 36 55 3.9E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 SUPERFAMILY SSF56322 18 459 2.09E-141 T 13-10-2018 IPR005801 ADC synthase GO:0009058 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 PRINTS PR00095 Anthranilate synthase component I signature 409 423 1.7E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 PRINTS PR00095 Anthranilate synthase component I signature 300 313 1.7E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 PRINTS PR00095 Anthranilate synthase component I signature 314 327 1.7E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 PRINTS PR00095 Anthranilate synthase component I signature 394 408 1.7E-20 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 Gene3D G3DSA:3.60.120.10 2 470 2.1E-161 T 13-10-2018 IPR005801 ADC synthase GO:0009058 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 103 454 3.2E-99 T 13-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 Pfam PF04715 Anthranilate synthase component I, N terminal region 22 150 4.2E-31 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BMD_0093 88a8d0ae97af1c68ee65006b06567224 471 Pfam PF00425 chorismate binding enzyme 199 452 1.5E-98 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BMD_2346 0839bc89ab094738a658c7359d1abc94 401 SUPERFAMILY SSF103473 4 392 1.05E-50 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2346 0839bc89ab094738a658c7359d1abc94 401 Gene3D G3DSA:1.20.1250.20 202 388 1.2E-26 T 13-10-2018 BMD_2346 0839bc89ab094738a658c7359d1abc94 401 Pfam PF07690 Major Facilitator Superfamily 12 326 2.1E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2346 0839bc89ab094738a658c7359d1abc94 401 Gene3D G3DSA:1.20.1250.20 4 195 9.0E-21 T 13-10-2018 BMD_2120 8858b516d64d65f965b6140da3eff741 396 Pfam PF13800 Sigma factor regulator N-terminal 71 160 1.1E-18 T 13-10-2018 IPR029101 Sigma factor regulator, N-terminal BMD_2120 8858b516d64d65f965b6140da3eff741 396 Pfam PF13791 Sigma factor regulator C-terminal 219 377 1.2E-34 T 13-10-2018 IPR025672 Sigma factor regulator C-terminal domain BMD_4502 295655d103b87fa4c3242eeb561949b8 202 PRINTS PR01703 Manganese superoxide dismutase signature 126 134 4.0E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.0E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.0E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 4.0E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 4.0E-28 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 SUPERFAMILY SSF46609 1 91 4.58E-39 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 SUPERFAMILY SSF54719 92 201 4.58E-48 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 Gene3D G3DSA:1.10.287.990 20 90 1.1E-32 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 197 4.2E-42 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 Gene3D G3DSA:2.40.500.20 91 202 7.9E-51 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 PIRSF PIRSF000349 1 202 7.3E-86 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_4502 295655d103b87fa4c3242eeb561949b8 202 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 1.1E-34 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BMD_1494 25ea063a9b447d8cfc49924da93886c0 75 Gene3D G3DSA:3.40.50.1000 5 16 4.3E-12 T 13-10-2018 IPR023214 HAD superfamily BMD_1494 25ea063a9b447d8cfc49924da93886c0 75 Gene3D G3DSA:1.10.150.240 17 61 4.3E-12 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_1494 25ea063a9b447d8cfc49924da93886c0 75 SUPERFAMILY SSF56784 5 65 1.02E-9 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3798 62314b5f4748248069be8d4770fc1061 193 Gene3D G3DSA:3.90.226.10 1 192 2.4E-79 T 13-10-2018 BMD_3798 62314b5f4748248069be8d4770fc1061 193 SUPERFAMILY SSF52096 11 190 2.4E-69 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_3798 62314b5f4748248069be8d4770fc1061 193 Pfam PF00574 Clp protease 13 190 2.5E-83 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BMD_3798 62314b5f4748248069be8d4770fc1061 193 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 13-10-2018 IPR033135 ClpP, histidine active site BMD_3798 62314b5f4748248069be8d4770fc1061 193 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 1.2E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3798 62314b5f4748248069be8d4770fc1061 193 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 1.2E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3798 62314b5f4748248069be8d4770fc1061 193 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 1.2E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3798 62314b5f4748248069be8d4770fc1061 193 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 1.2E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3798 62314b5f4748248069be8d4770fc1061 193 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 1.2E-50 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3798 62314b5f4748248069be8d4770fc1061 193 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 43.148 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_3798 62314b5f4748248069be8d4770fc1061 193 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 190 3.3E-99 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BMD_1879 70c22252de23b5c6e4efad470fa7ce38 192 SUPERFAMILY SSF46785 22 130 1.34E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1879 70c22252de23b5c6e4efad470fa7ce38 192 Gene3D G3DSA:1.10.10.10 2 168 8.7E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1879 70c22252de23b5c6e4efad470fa7ce38 192 SMART SM00347 39 139 3.3E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1879 70c22252de23b5c6e4efad470fa7ce38 192 ProSitePatterns PS01117 MarR-type HTH domain signature. 78 112 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BMD_1879 70c22252de23b5c6e4efad470fa7ce38 192 Pfam PF01047 MarR family 46 103 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1235 808cf322d5196a78a04d155f8b45269a 221 Pfam PF12710 haloacid dehalogenase-like hydrolase 6 177 4.9E-20 T 13-10-2018 BMD_1235 808cf322d5196a78a04d155f8b45269a 221 Gene3D G3DSA:3.40.50.1000 6 209 9.6E-65 T 13-10-2018 IPR023214 HAD superfamily BMD_1235 808cf322d5196a78a04d155f8b45269a 221 Hamap MF_01680 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [mtnX]. 2 216 48.445 T 13-10-2018 IPR017718 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase GO:0016791|GO:0071267 KEGG: 00270+3.1.3.87|MetaCyc: PWY-4361 BMD_1235 808cf322d5196a78a04d155f8b45269a 221 TIGRFAM TIGR03333 salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase 6 217 7.3E-103 T 13-10-2018 IPR017718 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase GO:0016791|GO:0071267 KEGG: 00270+3.1.3.87|MetaCyc: PWY-4361 BMD_1235 808cf322d5196a78a04d155f8b45269a 221 SUPERFAMILY SSF56784 6 217 1.79E-52 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1235 808cf322d5196a78a04d155f8b45269a 221 Gene3D G3DSA:3.90.1470.20 15 134 9.6E-65 T 13-10-2018 BMD_1235 808cf322d5196a78a04d155f8b45269a 221 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 6 179 8.0E-29 T 13-10-2018 BMD_1235 808cf322d5196a78a04d155f8b45269a 221 TIGRFAM TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 6 186 7.2E-47 T 13-10-2018 IPR006384 Pyridoxal phosphate phosphatase-related GO:0016791 BMD_2915 c2d84dff7ac5adcefc57d70c8ac9c433 244 SUPERFAMILY SSF88713 45 209 4.73E-30 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_2915 c2d84dff7ac5adcefc57d70c8ac9c433 244 Gene3D G3DSA:3.20.20.370 24 242 9.0E-60 T 13-10-2018 BMD_2915 c2d84dff7ac5adcefc57d70c8ac9c433 244 Pfam PF01522 Polysaccharide deacetylase 77 198 1.2E-16 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 TIGRFAM TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB 5 384 5.2E-170 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 Gene3D G3DSA:3.40.1190.10 27 240 2.8E-15 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 Pfam PF08245 Mur ligase middle domain 39 239 4.7E-8 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 SUPERFAMILY SSF53623 35 237 6.41E-17 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 164 181 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 198 215 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 36 52 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 113 128 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 260 277 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 295 310 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 364 380 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 59 76 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 79 97 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_1092 76c9440a4ad3859322ede074c83a23ee 395 PRINTS PR01758 Capsule biosynthesis protein CapB signature 142 157 2.2E-94 T 13-10-2018 IPR008337 Capsule biosynthesis protein CapB GO:0016020|GO:0045227 BMD_4253 17b94c1244fa01043fe9918d6ce6b94d 155 Gene3D G3DSA:3.30.110.150 58 153 3.1E-34 T 13-10-2018 IPR038594 SepF-like superfamily BMD_4253 17b94c1244fa01043fe9918d6ce6b94d 155 Pfam PF04472 Cell division protein SepF 66 136 7.0E-30 T 13-10-2018 IPR007561 Cell division protein SepF/SepF-related GO:0090529 BMD_4253 17b94c1244fa01043fe9918d6ce6b94d 155 Hamap MF_01197 Cell division protein SepF [sepF]. 1 144 20.48 T 13-10-2018 IPR023052 Cell division protein SepF GO:0090529 BMD_0756 d9883ba795526143ae67c782f7c48474 442 PIRSF PIRSF002746 1 442 2.8E-144 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_0756 d9883ba795526143ae67c782f7c48474 442 Pfam PF02447 GntP family permease 6 439 4.0E-145 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_0756 d9883ba795526143ae67c782f7c48474 442 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 6 442 4.0E-139 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_1204 9d4ae6bca0b3663430a05e9ed512c289 506 PIRSF PIRSF005690 7 494 6.7E-141 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_1204 9d4ae6bca0b3663430a05e9ed512c289 506 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 22 480 3.5E-152 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_1013 421cdd569dcdc6623b2708f8dff4b185 60 Pfam PF05532 CsbD-like 7 57 2.9E-18 T 13-10-2018 IPR008462 CsbD-like domain BMD_1013 421cdd569dcdc6623b2708f8dff4b185 60 Gene3D G3DSA:1.10.1470.10 6 60 6.2E-9 T 13-10-2018 IPR036629 YjbJ superfamily BMD_1013 421cdd569dcdc6623b2708f8dff4b185 60 SUPERFAMILY SSF69047 7 59 1.44E-11 T 13-10-2018 IPR036629 YjbJ superfamily BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 Gene3D G3DSA:3.30.565.10 174 323 4.1E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 270 280 5.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 286 304 5.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 323 5.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 PRINTS PR00344 Bacterial sensor protein C-terminal signature 252 266 5.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 Gene3D G3DSA:1.10.287.130 124 173 4.1E-34 T 13-10-2018 BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 SUPERFAMILY SSF55874 175 323 9.69E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 217 324 2.3E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_3335 aeedc6fe5a589636ecbfbbec336e427f 334 SMART SM00387 216 326 1.9E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_4852 683f0058699678027b275b3b42beafe9 259 SUPERFAMILY SSF52540 10 217 3.74E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4852 683f0058699678027b275b3b42beafe9 259 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4852 683f0058699678027b275b3b42beafe9 259 Pfam PF00005 ABC transporter 26 165 2.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4852 683f0058699678027b275b3b42beafe9 259 Gene3D G3DSA:3.40.50.300 2 243 8.9E-60 T 13-10-2018 BMD_4852 683f0058699678027b275b3b42beafe9 259 SMART SM00382 35 215 2.8E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 SMART SM00357 3 66 1.9E-32 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.8E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 PRINTS PR00050 Cold shock protein signature 24 33 6.7E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 PRINTS PR00050 Cold shock protein signature 39 57 6.7E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 PRINTS PR00050 Cold shock protein signature 4 19 6.7E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 SUPERFAMILY SSF50249 1 64 3.43E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 PIRSF PIRSF002599 1 66 1.7E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 Gene3D G3DSA:2.40.50.140 1 66 1.6E-30 T 13-10-2018 BMD_3402 5e2206813ef735320c114fbbc76e0be1 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_5010 7a0d19cd6cb7610e3b63044d72391e74 68 Pfam PF02525 Flavodoxin-like fold 4 64 3.9E-5 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_5010 7a0d19cd6cb7610e3b63044d72391e74 68 Gene3D G3DSA:3.40.50.360 1 68 9.4E-8 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_5010 7a0d19cd6cb7610e3b63044d72391e74 68 SUPERFAMILY SSF52218 4 62 9.21E-5 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_0661 afe66594b210cd346e38185dffcc2129 344 Gene3D G3DSA:3.40.50.2300 167 329 3.8E-83 T 13-10-2018 BMD_0661 afe66594b210cd346e38185dffcc2129 344 Pfam PF13377 Periplasmic binding protein-like domain 175 336 3.3E-38 T 13-10-2018 BMD_0661 afe66594b210cd346e38185dffcc2129 344 SMART SM00354 2 72 2.2E-29 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0661 afe66594b210cd346e38185dffcc2129 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 4.4E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BMD_0661 afe66594b210cd346e38185dffcc2129 344 SUPERFAMILY SSF53822 63 338 8.35E-81 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_0661 afe66594b210cd346e38185dffcc2129 344 Gene3D G3DSA:3.40.50.2300 76 328 3.8E-83 T 13-10-2018 BMD_0661 afe66594b210cd346e38185dffcc2129 344 Gene3D G3DSA:1.10.260.40 2 60 3.9E-23 T 13-10-2018 BMD_0661 afe66594b210cd346e38185dffcc2129 344 SUPERFAMILY SSF47413 3 60 6.49E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3997 52acdccd5884f130f8dc2c4b78eeb7a7 280 SUPERFAMILY SSF52540 3 205 3.65E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3997 52acdccd5884f130f8dc2c4b78eeb7a7 280 SMART SM00382 29 203 2.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3997 52acdccd5884f130f8dc2c4b78eeb7a7 280 Pfam PF00005 ABC transporter 20 154 1.2E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3997 52acdccd5884f130f8dc2c4b78eeb7a7 280 Gene3D G3DSA:3.40.50.300 1 233 5.2E-50 T 13-10-2018 BMD_5078 258a1e3c4951d47ca2c0035dab4bcedc 178 Pfam PF03358 NADPH-dependent FMN reductase 3 122 1.6E-21 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BMD_5078 258a1e3c4951d47ca2c0035dab4bcedc 178 SUPERFAMILY SSF52218 3 175 7.19E-34 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_5078 258a1e3c4951d47ca2c0035dab4bcedc 178 Gene3D G3DSA:3.40.50.360 1 175 4.0E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_4525 61e2524e97e1589669ffb6a1a220a401 234 PIRSF PIRSF018637 4 234 2.1E-81 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 BMD_4525 61e2524e97e1589669ffb6a1a220a401 234 Pfam PF04816 tRNA (adenine(22)-N(1))-methyltransferase 23 231 2.4E-71 T 13-10-2018 IPR006901 tRNA methyltransferase TrmK GO:0016429 BMD_4525 61e2524e97e1589669ffb6a1a220a401 234 SUPERFAMILY SSF53335 20 141 1.25E-5 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4525 61e2524e97e1589669ffb6a1a220a401 234 Gene3D G3DSA:3.40.50.150 1 164 1.2E-51 T 13-10-2018 BMD_4791 a01e3757cea15bbc56e4a6eeff708075 563 Pfam PF06160 Septation ring formation regulator, EzrA 3 556 5.6E-166 T 13-10-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 BMD_4791 a01e3757cea15bbc56e4a6eeff708075 563 Hamap MF_00728 Septation ring formation regulator EzrA [ezrA]. 1 562 21.465 T 13-10-2018 IPR010379 Septation ring formation regulator EzrA GO:0000921|GO:0005940|GO:0016021 BMD_4501 5577d021cc0c2bba023a97818d0e3e1c 425 Gene3D G3DSA:1.20.1250.20 12 401 1.2E-21 T 13-10-2018 BMD_4501 5577d021cc0c2bba023a97818d0e3e1c 425 SUPERFAMILY SSF103473 16 406 2.09E-30 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4501 5577d021cc0c2bba023a97818d0e3e1c 425 ProSitePatterns PS00217 Sugar transport proteins signature 2. 114 139 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_4501 5577d021cc0c2bba023a97818d0e3e1c 425 Pfam PF07690 Major Facilitator Superfamily 20 335 1.4E-20 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2348 43e2d0ffaf172b3f0b27db3b87ac546c 194 Gene3D G3DSA:3.40.50.360 1 171 1.4E-52 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2348 43e2d0ffaf172b3f0b27db3b87ac546c 194 SUPERFAMILY SSF52218 1 171 2.19E-43 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2348 43e2d0ffaf172b3f0b27db3b87ac546c 194 Pfam PF02525 Flavodoxin-like fold 1 168 2.4E-42 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_3113 948878dabb38bbfbe168a09fbe49a798 101 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 2.5E-10 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BMD_3113 948878dabb38bbfbe168a09fbe49a798 101 SUPERFAMILY SSF54909 1 89 2.4E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_3113 948878dabb38bbfbe168a09fbe49a798 101 Gene3D G3DSA:3.30.70.100 1 101 3.7E-20 T 13-10-2018 BMD_2464 56f47c9938c9b92b6964ab8faa4aa20d 153 Gene3D G3DSA:2.40.50.100 72 150 7.5E-27 T 13-10-2018 BMD_2464 56f47c9938c9b92b6964ab8faa4aa20d 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 80 93 8.0E-13 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_2464 56f47c9938c9b92b6964ab8faa4aa20d 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 112 125 8.0E-13 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_2464 56f47c9938c9b92b6964ab8faa4aa20d 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 97 111 8.0E-13 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_2464 56f47c9938c9b92b6964ab8faa4aa20d 153 SUPERFAMILY SSF51230 76 150 3.66E-22 T 13-10-2018 IPR011053 Single hybrid motif BMD_2464 56f47c9938c9b92b6964ab8faa4aa20d 153 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 2 151 4.0E-43 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BMD_2464 56f47c9938c9b92b6964ab8faa4aa20d 153 Pfam PF00364 Biotin-requiring enzyme 76 149 3.0E-20 T 13-10-2018 IPR000089 Biotin/lipoyl attachment BMD_0840 9d71801fb2c963a8421dd1cc888ccad6 307 Gene3D G3DSA:3.10.520.20 2 302 6.9E-59 T 13-10-2018 BMD_0840 9d71801fb2c963a8421dd1cc888ccad6 307 SUPERFAMILY SSF143631 2 292 1.83E-54 T 13-10-2018 IPR003374 ApbE-like superfamily BMD_0840 9d71801fb2c963a8421dd1cc888ccad6 307 Pfam PF02424 ApbE family 9 279 1.4E-50 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 BMD_0840 9d71801fb2c963a8421dd1cc888ccad6 307 PIRSF PIRSF006268 2 300 9.4E-45 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 BMD_1385 e34d058c4280dd772833a80d9ffb6016 331 Pfam PF10720 Protein of unknown function (DUF2515) 19 317 6.6E-115 T 13-10-2018 IPR019658 Protein of unknown function DUF2515 BMD_1126 35b8b98b2fca98e1156701eb2375f38a 293 SUPERFAMILY SSF53448 5 274 5.42E-71 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1126 35b8b98b2fca98e1156701eb2375f38a 293 Pfam PF00483 Nucleotidyl transferase 6 263 7.1E-37 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_1126 35b8b98b2fca98e1156701eb2375f38a 293 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 263 5.2E-120 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BMD_1126 35b8b98b2fca98e1156701eb2375f38a 293 Gene3D G3DSA:3.90.550.10 1 290 2.9E-96 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0815 896a218aab4736da92684c6fb1e5e9e9 251 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 1 246 1.3E-93 T 13-10-2018 IPR005226 UPF0014 family BMD_0815 896a218aab4736da92684c6fb1e5e9e9 251 Pfam PF03649 Uncharacterised protein family (UPF0014) 5 240 3.4E-78 T 13-10-2018 IPR005226 UPF0014 family BMD_0745 1ef3c4c875c9b58978b2c886ec36b456 225 Pfam PF04239 Protein of unknown function (DUF421) 89 204 1.3E-32 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_0745 1ef3c4c875c9b58978b2c886ec36b456 225 Gene3D G3DSA:3.30.240.20 169 225 8.2E-15 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_0745 1ef3c4c875c9b58978b2c886ec36b456 225 Gene3D G3DSA:3.30.240.20 80 155 7.5E-26 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_0105 afdfed98f33561c688c66c33395291b0 813 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 206 318 1.6E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Gene3D G3DSA:1.10.8.60 715 809 1.4E-30 T 13-10-2018 BMD_0105 afdfed98f33561c688c66c33395291b0 813 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 587 605 6.2E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0105 afdfed98f33561c688c66c33395291b0 813 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 649 663 6.2E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0105 afdfed98f33561c688c66c33395291b0 813 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 542 560 6.2E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0105 afdfed98f33561c688c66c33395291b0 813 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 616 634 6.2E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 BMD_0105 afdfed98f33561c688c66c33395291b0 813 SMART SM00382 538 682 3.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0105 afdfed98f33561c688c66c33395291b0 813 SMART SM00382 201 345 6.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0105 afdfed98f33561c688c66c33395291b0 813 Pfam PF07724 AAA domain (Cdc48 subfamily) 537 709 2.7E-57 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_0105 afdfed98f33561c688c66c33395291b0 813 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 296 308 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 715 794 1.5E-27 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_0105 afdfed98f33561c688c66c33395291b0 813 Gene3D G3DSA:1.10.1780.10 1 150 1.0E-61 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BMD_0105 afdfed98f33561c688c66c33395291b0 813 SUPERFAMILY SSF52540 162 472 9.82E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0105 afdfed98f33561c688c66c33395291b0 813 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 572 590 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Gene3D G3DSA:3.40.50.300 490 713 9.0E-92 T 13-10-2018 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Gene3D G3DSA:3.40.50.300 153 344 4.0E-72 T 13-10-2018 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Gene3D G3DSA:4.10.860.10 410 468 3.0E-52 T 13-10-2018 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 1.1E-16 T 13-10-2018 IPR004176 Clp, N-terminal BMD_0105 afdfed98f33561c688c66c33395291b0 813 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 143 1.0E-17 T 13-10-2018 IPR004176 Clp, N-terminal BMD_0105 afdfed98f33561c688c66c33395291b0 813 SUPERFAMILY SSF81923 5 150 7.36E-33 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Gene3D G3DSA:1.10.8.60 347 482 3.0E-52 T 13-10-2018 BMD_0105 afdfed98f33561c688c66c33395291b0 813 Pfam PF02151 UvrB/uvrC motif 418 452 5.3E-6 T 13-10-2018 IPR001943 UVR domain GO:0005515 BMD_0105 afdfed98f33561c688c66c33395291b0 813 SUPERFAMILY SSF52540 487 803 2.44E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0105 afdfed98f33561c688c66c33395291b0 813 SMART SM01086 715 804 2.7E-38 T 13-10-2018 IPR019489 Clp ATPase, C-terminal BMD_0638 42b654d5aeb1d4f8f3c3ddbdf6415f9e 78 Pfam PF08858 IDEAL domain 34 70 7.5E-14 T 13-10-2018 IPR014957 IDEAL domain BMD_0638 42b654d5aeb1d4f8f3c3ddbdf6415f9e 78 SMART SM00914 34 70 5.8E-10 T 13-10-2018 IPR014957 IDEAL domain BMD_0638 42b654d5aeb1d4f8f3c3ddbdf6415f9e 78 Gene3D G3DSA:4.10.810.10 19 77 2.7E-10 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_4519 fa953df6fbf495a7b0c60c5216293356 83 Pfam PF11116 Protein of unknown function (DUF2624) 1 82 7.2E-34 T 13-10-2018 IPR020277 Protein of unknown function DUF2624 BMD_4519 fa953df6fbf495a7b0c60c5216293356 83 ProDom PD060869 YQFT IG BH1387 1 67 4.0E-15 T 13-10-2018 IPR020277 Protein of unknown function DUF2624 BMD_0278 0d7b43be709ed502f5241abca05151b1 471 Pfam PF00156 Phosphoribosyl transferase domain 281 381 1.2E-7 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_0278 0d7b43be709ed502f5241abca05151b1 471 Pfam PF13522 Glutamine amidotransferase domain 72 204 1.4E-22 T 13-10-2018 BMD_0278 0d7b43be709ed502f5241abca05151b1 471 SUPERFAMILY SSF53271 246 463 2.75E-74 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_0278 0d7b43be709ed502f5241abca05151b1 471 Gene3D G3DSA:3.40.50.2020 270 434 1.3E-171 T 13-10-2018 BMD_0278 0d7b43be709ed502f5241abca05151b1 471 SUPERFAMILY SSF56235 12 238 3.26E-72 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0278 0d7b43be709ed502f5241abca05151b1 471 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 11 454 47.559 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BMD_0278 0d7b43be709ed502f5241abca05151b1 471 PIRSF PIRSF000485 8 469 1.7E-189 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BMD_0278 0d7b43be709ed502f5241abca05151b1 471 Gene3D G3DSA:3.60.20.10 12 456 1.3E-171 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_0278 0d7b43be709ed502f5241abca05151b1 471 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 12 455 8.5E-172 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BMD_1045 5402a4a9481e5e0895da5233cf051c4f 294 Gene3D G3DSA:3.90.850.10 81 293 5.6E-60 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_1045 5402a4a9481e5e0895da5233cf051c4f 294 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 89 284 3.5E-49 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BMD_1045 5402a4a9481e5e0895da5233cf051c4f 294 SUPERFAMILY SSF56529 79 285 3.14E-52 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_2028 421114bbbe3fe650f036f19750fb3767 332 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 4 176 4.8E-38 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_2028 421114bbbe3fe650f036f19750fb3767 332 Gene3D G3DSA:3.40.630.40 1 178 3.4E-43 T 13-10-2018 BMD_2028 421114bbbe3fe650f036f19750fb3767 332 SMART SM00646 64 176 7.4E-25 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_2028 421114bbbe3fe650f036f19750fb3767 332 SUPERFAMILY SSF53187 1 181 1.51E-43 T 13-10-2018 BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 SUPERFAMILY SSF75005 1 300 1.88E-107 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 Gene3D G3DSA:2.115.10.20 1 308 4.9E-154 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 SMART SM00640 1 415 4.1E-144 T 13-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 1 299 7.7E-103 T 13-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 SUPERFAMILY SSF49899 299 451 9.5E-38 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 1 425 5.4E-150 T 13-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 Gene3D G3DSA:2.60.120.560 309 438 4.9E-154 T 13-10-2018 BMD_3758 bc7e092d043bb5754ae57cded5f03f93 459 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 302 446 3.1E-34 T 13-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal BMD_4950 77c6af046ae1826c9d2fb68a47282acb 107 Pfam PF14068 Putative membrane protein 8 107 1.1E-41 T 13-10-2018 IPR025917 Putative membrane protein YuiB BMD_4129 ef047ca3b205f935a88f26bc3b96f5f3 84 Pfam PF05239 PRC-barrel domain 1 76 1.6E-13 T 13-10-2018 IPR027275 PRC-barrel domain BMD_4129 ef047ca3b205f935a88f26bc3b96f5f3 84 SUPERFAMILY SSF50346 1 75 4.94E-11 T 13-10-2018 IPR011033 PRC-barrel-like superfamily BMD_4129 ef047ca3b205f935a88f26bc3b96f5f3 84 Gene3D G3DSA:2.30.30.240 1 78 5.6E-9 T 13-10-2018 BMD_4129 ef047ca3b205f935a88f26bc3b96f5f3 84 TIGRFAM TIGR02888 spore_YlmC_YmxH: sporulation protein, YlmC/YmxH family 2 75 1.1E-27 T 13-10-2018 IPR014238 Sporulation protein YlmC/YmxH BMD_4118 8332581318c2ca58463a3818cc381f1e 362 SUPERFAMILY SSF53822 53 269 1.9E-13 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_4118 8332581318c2ca58463a3818cc381f1e 362 Gene3D G3DSA:3.40.50.2300 149 344 7.5E-115 T 13-10-2018 BMD_4118 8332581318c2ca58463a3818cc381f1e 362 Gene3D G3DSA:3.40.50.2300 43 311 7.5E-115 T 13-10-2018 BMD_4118 8332581318c2ca58463a3818cc381f1e 362 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 41 349 9.1E-85 T 13-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 BMD_3076 d83e37722d6689854a434bf8946c8bf1 149 Pfam PF14154 Domain of unknown function (DUF4306) 2 78 8.5E-14 T 13-10-2018 IPR025440 Protein of unknown function DUF4306 BMD_0957 25524f34d528bdcc8a9707ca3322ea08 487 SUPERFAMILY SSF55604 6 80 1.96E-20 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_0957 25524f34d528bdcc8a9707ca3322ea08 487 Gene3D G3DSA:3.30.1360.60 2 77 1.2E-24 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BMD_0957 25524f34d528bdcc8a9707ca3322ea08 487 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 27 109 4.1E-20 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BMD_0957 25524f34d528bdcc8a9707ca3322ea08 487 Pfam PF00367 phosphotransferase system, EIIB 8 40 4.3E-16 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_0957 25524f34d528bdcc8a9707ca3322ea08 487 Pfam PF02378 Phosphotransferase system, EIIC 110 407 7.7E-45 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_0957 25524f34d528bdcc8a9707ca3322ea08 487 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 4 463 2.7E-202 T 13-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 BMD_0957 25524f34d528bdcc8a9707ca3322ea08 487 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 18 35 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BMD_4989 4988139ea0bf536edecdf1fc924f1f5e 118 Gene3D G3DSA:3.40.30.10 1 116 3.0E-47 T 13-10-2018 BMD_4989 4988139ea0bf536edecdf1fc924f1f5e 118 SUPERFAMILY SSF52833 3 117 1.7E-36 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4989 4988139ea0bf536edecdf1fc924f1f5e 118 Pfam PF03960 ArsC family 10 115 1.3E-16 T 13-10-2018 IPR006660 Arsenate reductase-like BMD_4989 4988139ea0bf536edecdf1fc924f1f5e 118 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 5 117 9.8E-37 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR BMD_4076 7bb8bb4242c14b516619ae86243246e8 109 Gene3D G3DSA:3.10.350.10 33 105 7.6E-9 T 13-10-2018 IPR036779 LysM domain superfamily BMD_4076 7bb8bb4242c14b516619ae86243246e8 109 Pfam PF01476 LysM domain 43 95 1.5E-7 T 13-10-2018 IPR018392 LysM domain BMD_4076 7bb8bb4242c14b516619ae86243246e8 109 Hamap MF_02014 Cell division suppressor protein YneA [yneA]. 6 109 25.375 T 13-10-2018 IPR022887 Cell division suppressor protein, YneA BMD_2641 53e0ac115080b77caedb5fef555c2b30 382 Pfam PF12698 ABC-2 family transporter protein 20 370 7.1E-48 T 13-10-2018 BMD_2641 53e0ac115080b77caedb5fef555c2b30 382 Gene3D G3DSA:3.40.1710.10 45 147 7.1E-6 T 13-10-2018 BMD_2641 53e0ac115080b77caedb5fef555c2b30 382 PRINTS PR00164 ABC-2 type transport system membrane protein signature 263 287 5.4E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BMD_2641 53e0ac115080b77caedb5fef555c2b30 382 PRINTS PR00164 ABC-2 type transport system membrane protein signature 300 319 5.4E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BMD_0837 af5f8bba9a4bc0b1575b2fa4497817bb 286 SUPERFAMILY SSF103481 196 274 7.59E-7 T 13-10-2018 BMD_0837 af5f8bba9a4bc0b1575b2fa4497817bb 286 SUPERFAMILY SSF103481 36 138 8.11E-9 T 13-10-2018 BMD_0837 af5f8bba9a4bc0b1575b2fa4497817bb 286 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 1 285 2.2E-118 T 13-10-2018 BMD_0837 af5f8bba9a4bc0b1575b2fa4497817bb 286 Pfam PF06800 Sugar transport protein 5 283 2.8E-110 T 13-10-2018 IPR010651 Sugar transport protein GO:0015144|GO:0016021|GO:0034219 BMD_1582 3f201fc21038772573cb5a4195780552 464 SUPERFAMILY SSF51679 3 438 6.28E-122 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_1582 3f201fc21038772573cb5a4195780552 464 Pfam PF00296 Luciferase-like monooxygenase 26 387 4.5E-50 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_1582 3f201fc21038772573cb5a4195780552 464 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 435 8.0E-169 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_1582 3f201fc21038772573cb5a4195780552 464 PIRSF PIRSF000337 3 449 7.6E-142 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_1582 3f201fc21038772573cb5a4195780552 464 Gene3D G3DSA:3.20.20.30 2 457 1.9E-143 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 Pfam PF01546 Peptidase family M20/M25/M40 73 481 1.0E-20 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 Gene3D G3DSA:3.40.630.10 2 228 3.6E-54 T 13-10-2018 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 SUPERFAMILY SSF53187 13 483 1.37E-57 T 13-10-2018 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 10 482 3.0E-181 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 Pfam PF07687 Peptidase dimerisation domain 214 292 4.1E-6 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 102 120 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 429 445 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 252 271 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 451 473 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 364 382 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 160 178 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 207 224 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 81 100 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PRINTS PR00934 X-His dipeptidase (M25) signature 136 153 5.0E-51 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 Gene3D G3DSA:3.40.630.10 344 485 1.4E-23 T 13-10-2018 BMD_2298 c9ee74e421491f787387094e7e7116d2 486 PIRSF PIRSF016599 2 486 1.8E-185 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BMD_3273 b084d95005e0d20c8f42f396981cd6ad 231 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_3273 b084d95005e0d20c8f42f396981cd6ad 231 Gene3D G3DSA:3.40.50.300 5 231 4.1E-72 T 13-10-2018 BMD_3273 b084d95005e0d20c8f42f396981cd6ad 231 SUPERFAMILY SSF52540 7 229 1.73E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3273 b084d95005e0d20c8f42f396981cd6ad 231 SMART SM00382 34 223 8.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3273 b084d95005e0d20c8f42f396981cd6ad 231 Pfam PF00005 ABC transporter 25 174 2.5E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0944 33b6b82ac866171efbb030f7b6680c7a 195 SMART SM00855 1 152 9.4E-26 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_0944 33b6b82ac866171efbb030f7b6680c7a 195 Gene3D G3DSA:3.40.50.1240 1 195 3.5E-57 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_0944 33b6b82ac866171efbb030f7b6680c7a 195 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 2 190 1.3E-54 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BMD_0944 33b6b82ac866171efbb030f7b6680c7a 195 SUPERFAMILY SSF53254 2 195 4.06E-53 T 13-10-2018 IPR029033 Histidine phosphatase superfamily BMD_0944 33b6b82ac866171efbb030f7b6680c7a 195 PIRSF PIRSF000709 1 112 1.3E-5 T 13-10-2018 BMD_0944 33b6b82ac866171efbb030f7b6680c7a 195 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 4 13 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 SUPERFAMILY SSF55021 349 422 3.44E-13 T 13-10-2018 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 SUPERFAMILY SSF55347 138 303 1.31E-52 T 13-10-2018 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 184 206 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 Pfam PF01842 ACT domain 351 416 4.9E-14 T 13-10-2018 IPR002912 ACT domain BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 Gene3D G3DSA:3.30.360.10 137 344 1.3E-148 T 13-10-2018 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 Gene3D G3DSA:3.30.70.260 345 418 1.3E-148 T 13-10-2018 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 Pfam PF00742 Homoserine dehydrogenase 138 316 9.5E-66 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 SUPERFAMILY SSF51735 1 159 2.39E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 PIRSF PIRSF000098 2 430 2.1E-171 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 11 130 6.8E-26 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 BMD_4962 ddebf244f9d9e65716308f396561d2d3 433 Gene3D G3DSA:3.40.50.720 5 338 1.3E-148 T 13-10-2018 BMD_1474 7334d0a6d217944b581a5a5f9477daf0 347 Pfam PF00487 Fatty acid desaturase 51 292 4.8E-35 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 BMD_2059 1dbdb0695803eabaa071f613d11e5eff 466 SUPERFAMILY SSF53474 178 390 1.37E-10 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2059 1dbdb0695803eabaa071f613d11e5eff 466 Pfam PF07519 Tannase and feruloyl esterase 69 189 7.3E-5 T 13-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 BMD_3494 89302ac636b0704bb99c3585c0fd1a26 112 Pfam PF11181 Heat induced stress protein YflT 4 103 5.6E-23 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_2061 9a7196b55918b304d892721d9b65caa2 199 Pfam PF11738 Protein of unknown function (DUF3298) 110 180 5.7E-16 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 BMD_2061 9a7196b55918b304d892721d9b65caa2 199 Gene3D G3DSA:3.90.640.20 108 194 2.7E-17 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily BMD_2061 9a7196b55918b304d892721d9b65caa2 199 Gene3D G3DSA:3.30.565.40 5 106 1.1E-12 T 13-10-2018 BMD_2061 9a7196b55918b304d892721d9b65caa2 199 Pfam PF13739 Domain of unknown function (DUF4163) 18 92 5.5E-9 T 13-10-2018 IPR025303 Deacetylase PdaC BMD_4496 8ef627592474925ca2272ef2b3e96a8c 164 Pfam PF16258 Domain of unknown function (DUF4912) 17 121 1.3E-15 T 13-10-2018 IPR032585 Protein of unknown function DUF4912 BMD_2041 affcbc40321b6d2b38cf6b31c74c1ee4 312 Pfam PF00294 pfkB family carbohydrate kinase 4 301 2.1E-46 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_2041 affcbc40321b6d2b38cf6b31c74c1ee4 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_2041 affcbc40321b6d2b38cf6b31c74c1ee4 312 SUPERFAMILY SSF53613 3 305 6.24E-60 T 13-10-2018 IPR029056 Ribokinase-like BMD_2041 affcbc40321b6d2b38cf6b31c74c1ee4 312 Gene3D G3DSA:3.40.1190.20 1 308 8.6E-65 T 13-10-2018 IPR029056 Ribokinase-like BMD_4968 37c8f67db4f7e085d89fa6e07e2ed1b5 88 Pfam PF11256 Protein of unknown function (DUF3055) 7 86 2.0E-37 T 13-10-2018 IPR021415 Protein of unknown function DUF3055 BMD_2376 5e7e45e45a358d5b9ba68291ba1e409b 111 Gene3D G3DSA:1.10.10.10 2 110 7.8E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2376 5e7e45e45a358d5b9ba68291ba1e409b 111 SMART SM00418 9 90 3.9E-20 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2376 5e7e45e45a358d5b9ba68291ba1e409b 111 SUPERFAMILY SSF46785 9 94 5.12E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2376 5e7e45e45a358d5b9ba68291ba1e409b 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 11 26 3.8E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2376 5e7e45e45a358d5b9ba68291ba1e409b 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 3.8E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2376 5e7e45e45a358d5b9ba68291ba1e409b 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 3.8E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_2376 5e7e45e45a358d5b9ba68291ba1e409b 111 Pfam PF12840 Helix-turn-helix domain 8 67 1.6E-13 T 13-10-2018 BMD_0050 c29ff062cbfa843a24df33e812600a26 121 Pfam PF06156 Initiation control protein YabA 2 116 1.6E-39 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 BMD_0050 c29ff062cbfa843a24df33e812600a26 121 Hamap MF_01159 Initiation-control protein YabA. 1 120 25.387 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 BMD_0050 c29ff062cbfa843a24df33e812600a26 121 PIRSF PIRSF021439 1 121 2.7E-42 T 13-10-2018 IPR010377 Initiation control protein YabA GO:0006260 BMD_1730 7081353aefd91378939638cbbcbcd010 66 SMART SM00357 3 66 6.4E-30 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_1730 7081353aefd91378939638cbbcbcd010 66 Gene3D G3DSA:2.40.50.140 1 66 2.9E-30 T 13-10-2018 BMD_1730 7081353aefd91378939638cbbcbcd010 66 SUPERFAMILY SSF50249 1 64 2.4E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_1730 7081353aefd91378939638cbbcbcd010 66 PRINTS PR00050 Cold shock protein signature 4 19 2.3E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1730 7081353aefd91378939638cbbcbcd010 66 PRINTS PR00050 Cold shock protein signature 24 33 2.3E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1730 7081353aefd91378939638cbbcbcd010 66 PRINTS PR00050 Cold shock protein signature 39 57 2.3E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1730 7081353aefd91378939638cbbcbcd010 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 5.8E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_1730 7081353aefd91378939638cbbcbcd010 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_1730 7081353aefd91378939638cbbcbcd010 66 PIRSF PIRSF002599 1 66 1.1E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_3295 83ecfcddc5ec9d026a0c0c83f992e328 100 ProSitePatterns PS00669 Gas vesicles protein GVPa signature 2. 45 58 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 BMD_3295 83ecfcddc5ec9d026a0c0c83f992e328 100 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 12 26 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 BMD_3295 83ecfcddc5ec9d026a0c0c83f992e328 100 Pfam PF00741 Gas vesicle protein 11 49 4.5E-16 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 BMD_3974 b34396a9a8b32e8bc0865b17333c8ed8 239 SUPERFAMILY SSF52467 3 238 3.46E-71 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BMD_3974 b34396a9a8b32e8bc0865b17333c8ed8 239 Gene3D G3DSA:3.30.1600.10 32 166 1.3E-69 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily BMD_3974 b34396a9a8b32e8bc0865b17333c8ed8 239 Pfam PF02146 Sir2 family 23 194 4.6E-50 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 BMD_3974 b34396a9a8b32e8bc0865b17333c8ed8 239 Gene3D G3DSA:3.40.50.1220 14 238 1.3E-69 T 13-10-2018 BMD_1096 3d9e7a64b4ed68c33b38e2aafce25665 139 SUPERFAMILY SSF47090 67 125 7.59E-17 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_1096 3d9e7a64b4ed68c33b38e2aafce25665 139 Gene3D G3DSA:1.10.101.10 62 134 5.8E-19 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_1096 3d9e7a64b4ed68c33b38e2aafce25665 139 Pfam PF01471 Putative peptidoglycan binding domain 87 124 4.2E-12 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_3117 15bb70834a8b1542479f72fe433263ab 334 Pfam PF11553 Protein of unknown function (DUF3231) 5 159 3.7E-27 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_3117 15bb70834a8b1542479f72fe433263ab 334 Pfam PF11553 Protein of unknown function (DUF3231) 170 331 1.7E-40 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_1850 48697ba2a796b18949fb11a94a2fd06c 351 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 175 184 - T 13-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 BMD_1850 48697ba2a796b18949fb11a94a2fd06c 351 Gene3D G3DSA:2.70.98.10 8 350 4.4E-124 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BMD_1850 48697ba2a796b18949fb11a94a2fd06c 351 PIRSF PIRSF005096 1 348 1.3E-132 T 13-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 BMD_1850 48697ba2a796b18949fb11a94a2fd06c 351 Pfam PF01263 Aldose 1-epimerase 18 344 1.3E-95 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BMD_1850 48697ba2a796b18949fb11a94a2fd06c 351 SUPERFAMILY SSF74650 10 345 5.02E-115 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BMD_1530 250282060071fdfb7330e2a7bbb33364 204 Pfam PF01810 LysE type translocator 15 202 1.2E-29 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_0870 9f344d6cbd8db80d2dd529600a4c4f51 377 Gene3D G3DSA:3.20.20.30 1 359 2.0E-145 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_0870 9f344d6cbd8db80d2dd529600a4c4f51 377 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 347 6.6E-188 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 BMD_0870 9f344d6cbd8db80d2dd529600a4c4f51 377 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 377 80.485 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 BMD_0870 9f344d6cbd8db80d2dd529600a4c4f51 377 SUPERFAMILY SSF51679 2 347 4.45E-95 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_0870 9f344d6cbd8db80d2dd529600a4c4f51 377 Pfam PF00296 Luciferase-like monooxygenase 2 323 2.0E-90 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_1482 fb692a6a4672fee1b14baa1db0242805 302 Pfam PF00483 Nucleotidyl transferase 6 257 2.3E-30 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BMD_1482 fb692a6a4672fee1b14baa1db0242805 302 Gene3D G3DSA:3.90.550.10 1 291 1.2E-92 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1482 fb692a6a4672fee1b14baa1db0242805 302 SUPERFAMILY SSF53448 2 265 4.33E-68 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1482 fb692a6a4672fee1b14baa1db0242805 302 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 4 262 1.0E-118 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 Gene3D G3DSA:3.50.50.60 6 341 2.6E-100 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 309 327 9.1E-42 T 13-10-2018 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 291 307 9.1E-42 T 13-10-2018 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 276 291 9.1E-42 T 13-10-2018 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 327 343 9.1E-42 T 13-10-2018 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 9.1E-42 T 13-10-2018 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 9.1E-42 T 13-10-2018 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 Pfam PF01494 FAD binding domain 5 340 1.4E-78 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 Gene3D G3DSA:3.30.70.2450 182 265 2.6E-100 T 13-10-2018 BMD_2922 6db543d60c5d30c839c56ea1107f0da9 505 SUPERFAMILY SSF51905 4 370 1.3E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_0477 364d757482ca0b018dd29e92aa07250b 590 SUPERFAMILY SSF53474 125 337 7.27E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0477 364d757482ca0b018dd29e92aa07250b 590 TIGRFAM TIGR01840 esterase_phb: esterase, PHB depolymerase family 39 240 3.1E-53 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 BMD_0477 364d757482ca0b018dd29e92aa07250b 590 Gene3D G3DSA:3.40.50.1820 18 323 2.9E-64 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0477 364d757482ca0b018dd29e92aa07250b 590 Pfam PF13290 Chitobiase/beta-hexosaminidase C-terminal domain 342 407 7.0E-22 T 13-10-2018 BMD_0477 364d757482ca0b018dd29e92aa07250b 590 SUPERFAMILY SSF53474 28 128 3.43E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0477 364d757482ca0b018dd29e92aa07250b 590 Pfam PF10503 Esterase PHB depolymerase 37 241 7.3E-58 T 13-10-2018 IPR010126 Esterase, PHB depolymerase GO:0005576|GO:0016787 BMD_1503 93b0ab2c5a3e79ef05a19bad12d7e427 142 Pfam PF01047 MarR family 34 92 1.8E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1503 93b0ab2c5a3e79ef05a19bad12d7e427 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1503 93b0ab2c5a3e79ef05a19bad12d7e427 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 117 137 1.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1503 93b0ab2c5a3e79ef05a19bad12d7e427 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1503 93b0ab2c5a3e79ef05a19bad12d7e427 142 Gene3D G3DSA:1.10.10.10 6 141 2.1E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1503 93b0ab2c5a3e79ef05a19bad12d7e427 142 SUPERFAMILY SSF46785 12 140 2.08E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1503 93b0ab2c5a3e79ef05a19bad12d7e427 142 SMART SM00347 27 127 2.1E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 Gene3D G3DSA:3.20.20.210 8 525 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 Gene3D G3DSA:3.20.20.210 390 757 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 SUPERFAMILY SSF51726 397 757 1.83E-109 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 432 754 5.1E-146 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 9 758 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 6 314 4.0E-121 T 13-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 SUPERFAMILY SSF51726 7 392 1.96E-99 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 4 759 34.491 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BMD_3527 e540d4e34d1a64bf4e5dbf3b2fd87a97 764 PIRSF PIRSF000382 3 763 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BMD_1493 9a8f5c6625cf4d3aa5dba64c2db8992e 270 Pfam PF03437 BtpA family 10 264 4.8E-93 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family BMD_1493 9a8f5c6625cf4d3aa5dba64c2db8992e 270 SUPERFAMILY SSF51366 3 263 7.3E-24 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_1493 9a8f5c6625cf4d3aa5dba64c2db8992e 270 ProDom PD011184 BTPA I PHOTOSYSTEM BIOGENESIS ASSEMBLY SGCQ TRIPHOSPHATASE NUCLEOSIDE PAE3553 ENZYME 35 207 2.0E-71 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family BMD_1493 9a8f5c6625cf4d3aa5dba64c2db8992e 270 PIRSF PIRSF005956 2 269 1.4E-79 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family BMD_1493 9a8f5c6625cf4d3aa5dba64c2db8992e 270 TIGRFAM TIGR00259 thylakoid_BtpA: membrane complex biogenesis protein, BtpA family 11 264 2.5E-100 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family BMD_1128 def7a05b61472d00db4448d2418357f1 262 SUPERFAMILY SSF52266 93 256 1.45E-8 T 13-10-2018 BMD_1128 def7a05b61472d00db4448d2418357f1 262 Gene3D G3DSA:3.40.50.1110 82 257 1.2E-9 T 13-10-2018 IPR036514 SGNH hydrolase superfamily BMD_2807 b1d591b353d340e0e6cdbcf2f70448f6 352 Pfam PF00296 Luciferase-like monooxygenase 1 303 2.7E-67 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_2807 b1d591b353d340e0e6cdbcf2f70448f6 352 Gene3D G3DSA:3.20.20.30 1 346 5.6E-83 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2807 b1d591b353d340e0e6cdbcf2f70448f6 352 SUPERFAMILY SSF51679 1 335 1.16E-79 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_4548 f8af80e0cb4c800b7f550e05300cf447 250 Gene3D G3DSA:2.40.240.20 1 71 4.3E-24 T 13-10-2018 BMD_4548 f8af80e0cb4c800b7f550e05300cf447 250 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 6 249 1.1E-73 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BMD_4548 f8af80e0cb4c800b7f550e05300cf447 250 PIRSF PIRSF015601 1 249 2.2E-69 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BMD_4548 f8af80e0cb4c800b7f550e05300cf447 250 Pfam PF04452 RNA methyltransferase 16 244 3.9E-76 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BMD_4548 f8af80e0cb4c800b7f550e05300cf447 250 SUPERFAMILY SSF88697 1 68 1.94E-16 T 13-10-2018 IPR015947 PUA-like superfamily BMD_4548 f8af80e0cb4c800b7f550e05300cf447 250 Gene3D G3DSA:3.40.1280.10 72 250 1.2E-66 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BMD_4548 f8af80e0cb4c800b7f550e05300cf447 250 SUPERFAMILY SSF75217 72 248 6.54E-55 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases BMD_3093 01e505e2d3269d45ab70248e7f708b65 89 Pfam PF04226 Transglycosylase associated protein 33 78 8.5E-12 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 BMD_3037 4847af189b4efe081f716eddef1b9816 527 Gene3D G3DSA:1.10.10.2840 395 524 7.2E-19 T 13-10-2018 BMD_3037 4847af189b4efe081f716eddef1b9816 527 Pfam PF07905 Purine catabolism regulatory protein-like family 6 121 1.7E-30 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain BMD_3037 4847af189b4efe081f716eddef1b9816 527 Pfam PF13556 PucR C-terminal helix-turn-helix domain 462 520 9.0E-21 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain BMD_0353 774bf35075a9b8fb55cbf94ee3e3a6c6 1060 SUPERFAMILY SSF75704 531 600 9.02E-5 T 13-10-2018 BMD_0353 774bf35075a9b8fb55cbf94ee3e3a6c6 1060 TIGRFAM TIGR03929 T7_esaA_Nterm: type VII secretion protein EsaA 12 201 3.6E-59 T 13-10-2018 IPR023838 Type VII secretion system EsaA GO:0016021 BMD_4452 cb284554efb9dc496359660acfb74763 394 TIGRFAM TIGR02829 spore_III_AE: stage III sporulation protein AE 1 386 1.1E-152 T 13-10-2018 IPR014194 Sporulation stage III, protein AE BMD_4452 cb284554efb9dc496359660acfb74763 394 Pfam PF09546 Stage III sporulation protein AE (spore_III_AE) 72 386 1.8E-110 T 13-10-2018 IPR014194 Sporulation stage III, protein AE BMD_3415 7f45ac6b30a2a78001c8d1e9d92b0d5b 314 PIRSF PIRSF016839 1 314 1.2E-54 T 13-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 BMD_3415 7f45ac6b30a2a78001c8d1e9d92b0d5b 314 SUPERFAMILY SSF51556 1 312 2.04E-75 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_3415 7f45ac6b30a2a78001c8d1e9d92b0d5b 314 Pfam PF02126 Phosphotriesterase family 12 312 2.0E-82 T 13-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 BMD_3415 7f45ac6b30a2a78001c8d1e9d92b0d5b 314 Gene3D G3DSA:3.20.20.140 2 314 2.1E-102 T 13-10-2018 BMD_1533 8f50a0a661fb5be3c75e58f2fefdea7e 238 SUPERFAMILY SSF56784 4 224 2.21E-41 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1533 8f50a0a661fb5be3c75e58f2fefdea7e 238 Gene3D G3DSA:1.10.150.240 17 100 3.8E-78 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_1533 8f50a0a661fb5be3c75e58f2fefdea7e 238 Gene3D G3DSA:3.40.50.1000 6 223 3.8E-78 T 13-10-2018 IPR023214 HAD superfamily BMD_1533 8f50a0a661fb5be3c75e58f2fefdea7e 238 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 4 224 4.2E-84 T 13-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 BMD_1533 8f50a0a661fb5be3c75e58f2fefdea7e 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 94 194 1.0E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_1533 8f50a0a661fb5be3c75e58f2fefdea7e 238 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 199 2.1E-23 T 13-10-2018 BMD_1568 ae2f5eb7d94551d2daead44c31350463 520 Pfam PF02435 Levansucrase/Invertase 75 516 6.7E-157 T 13-10-2018 IPR003469 Glycoside hydrolase, family 68 GO:0009758|GO:0050053 BMD_1568 ae2f5eb7d94551d2daead44c31350463 520 Gene3D G3DSA:2.115.10.20 66 514 6.0E-187 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1568 ae2f5eb7d94551d2daead44c31350463 520 SUPERFAMILY SSF75005 75 519 1.57E-99 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1599 7999447caacd5b4c1b76ff0ead935144 327 PRINTS PR00116 Arginase signature 131 146 3.1E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1599 7999447caacd5b4c1b76ff0ead935144 327 PRINTS PR00116 Arginase signature 247 276 3.1E-6 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1599 7999447caacd5b4c1b76ff0ead935144 327 PIRSF PIRSF036979 25 327 8.6E-49 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1599 7999447caacd5b4c1b76ff0ead935144 327 Gene3D G3DSA:3.40.800.10 29 325 2.9E-75 T 13-10-2018 BMD_1599 7999447caacd5b4c1b76ff0ead935144 327 SUPERFAMILY SSF52768 30 325 8.82E-64 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_1599 7999447caacd5b4c1b76ff0ead935144 327 Pfam PF00491 Arginase family 44 319 4.4E-58 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1291 46213f1e1cc78bffd6eeb78474ec71e0 203 SUPERFAMILY SSF55469 3 203 5.89E-54 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_1291 46213f1e1cc78bffd6eeb78474ec71e0 203 Pfam PF00881 Nitroreductase family 10 183 9.1E-32 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_1291 46213f1e1cc78bffd6eeb78474ec71e0 203 Gene3D G3DSA:3.40.109.10 1 203 1.4E-55 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_0727 33ea9c9d88d02daa79bc967d3ad67239 196 Pfam PF01928 CYTH domain 4 186 1.0E-32 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BMD_0727 33ea9c9d88d02daa79bc967d3ad67239 196 SUPERFAMILY SSF55154 5 188 1.96E-30 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 BMD_0727 33ea9c9d88d02daa79bc967d3ad67239 196 Gene3D G3DSA:2.40.320.10 1 191 3.1E-53 T 13-10-2018 BMD_0727 33ea9c9d88d02daa79bc967d3ad67239 196 SMART SM01118 4 192 2.8E-20 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BMD_0727 33ea9c9d88d02daa79bc967d3ad67239 196 PIRSF PIRSF012526 1 193 7.1E-68 T 13-10-2018 IPR009195 Uncharacterised protein family YjbK BMD_3903 3fd99d0cc62fb12d36c46c3dd7178c78 172 Pfam PF03061 Thioesterase superfamily 28 99 1.5E-10 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_3903 3fd99d0cc62fb12d36c46c3dd7178c78 172 Gene3D G3DSA:3.10.129.10 1 166 5.1E-46 T 13-10-2018 BMD_3903 3fd99d0cc62fb12d36c46c3dd7178c78 172 SUPERFAMILY SSF54637 11 151 7.64E-36 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_0928 4219aa7cc7adf1e8cb3e7015e7ad7aa2 203 Pfam PF01613 Flavin reductase like domain 23 167 2.2E-24 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 BMD_0928 4219aa7cc7adf1e8cb3e7015e7ad7aa2 203 SMART SM00903 20 174 2.6E-25 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 BMD_0928 4219aa7cc7adf1e8cb3e7015e7ad7aa2 203 Gene3D G3DSA:2.30.110.10 2 203 4.3E-69 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BMD_0928 4219aa7cc7adf1e8cb3e7015e7ad7aa2 203 SUPERFAMILY SSF50475 11 198 2.45E-47 T 13-10-2018 BMD_2627 3ea6ea82deebbab43edf6790e4122789 193 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 2 182 7.3E-83 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like BMD_2627 3ea6ea82deebbab43edf6790e4122789 193 Hamap MF_01986 Probable UbiX-like flavin prenyltransferase. 1 188 51.065 T 13-10-2018 IPR032901 Probable UbiX-like flavin prenyltransferase BMD_2627 3ea6ea82deebbab43edf6790e4122789 193 SUPERFAMILY SSF52507 1 184 8.76E-65 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BMD_2627 3ea6ea82deebbab43edf6790e4122789 193 Gene3D G3DSA:3.40.50.1950 1 192 2.0E-80 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BMD_2627 3ea6ea82deebbab43edf6790e4122789 193 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 1 184 37.005 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like BMD_2627 3ea6ea82deebbab43edf6790e4122789 193 Pfam PF02441 Flavoprotein 1 163 1.9E-28 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 BMD_0582 e0b93e7881b673eccbb0743161a6efe8 307 SUPERFAMILY SSF54534 141 239 6.07E-35 T 13-10-2018 BMD_0582 e0b93e7881b673eccbb0743161a6efe8 307 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 178 199 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 BMD_0582 e0b93e7881b673eccbb0743161a6efe8 307 Pfam PF13616 PPIC-type PPIASE domain 137 241 3.3E-31 T 13-10-2018 BMD_0582 e0b93e7881b673eccbb0743161a6efe8 307 Hamap MF_01145 Foldase protein PrsA [prsA]. 2 295 20.685 T 13-10-2018 IPR023059 Foldase protein PrsA GO:0003755 BMD_0582 e0b93e7881b673eccbb0743161a6efe8 307 SUPERFAMILY SSF109998 34 179 3.27E-20 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily BMD_0582 e0b93e7881b673eccbb0743161a6efe8 307 Gene3D G3DSA:3.10.50.40 144 239 3.5E-40 T 13-10-2018 BMD_3471 618f0f1514c91c95cdd8624be2c08f1b 297 SUPERFAMILY SSF51658 7 291 1.11E-55 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_3471 618f0f1514c91c95cdd8624be2c08f1b 297 Pfam PF01261 Xylose isomerase-like TIM barrel 56 222 6.4E-24 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_3471 618f0f1514c91c95cdd8624be2c08f1b 297 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 6 292 7.2E-120 T 13-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 BMD_3471 618f0f1514c91c95cdd8624be2c08f1b 297 Hamap MF_01672 Inosose dehydratase [iolE]. 1 295 57.138 T 13-10-2018 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 BMD_3471 618f0f1514c91c95cdd8624be2c08f1b 297 Gene3D G3DSA:3.20.20.150 2 295 3.6E-82 T 13-10-2018 BMD_1584 ae3f51dc335763b917c2811fbaa7b532 275 Pfam PF03180 NLPA lipoprotein 39 275 8.3E-87 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_1584 ae3f51dc335763b917c2811fbaa7b532 275 Gene3D G3DSA:3.40.190.10 39 272 8.5E-94 T 13-10-2018 BMD_1584 ae3f51dc335763b917c2811fbaa7b532 275 PIRSF PIRSF002854 1 275 3.7E-98 T 13-10-2018 IPR004872 Lipoprotein NlpA family BMD_1584 ae3f51dc335763b917c2811fbaa7b532 275 Gene3D G3DSA:3.40.190.10 120 225 8.5E-94 T 13-10-2018 BMD_1584 ae3f51dc335763b917c2811fbaa7b532 275 SUPERFAMILY SSF53850 39 275 4.35E-77 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 SUPERFAMILY SSF56235 36 574 2.89E-179 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 Gene3D G3DSA:3.60.20.40 395 573 1.4E-70 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 Gene3D G3DSA:1.10.246.130 268 394 9.3E-45 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 395 419 - T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 39 566 2.9E-179 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 Pfam PF01019 Gamma-glutamyltranspeptidase 54 569 8.5E-174 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 474 491 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 252 268 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 61 86 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 154 173 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 419 437 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 450 465 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 136 154 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 282 301 3.5E-71 T 13-10-2018 BMD_3892 23ff3a96f5a7f99cdea8bf699ff55e15 692 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 395 413 3.5E-71 T 13-10-2018 BMD_2748 87f8e698b6db6eaadacec6d6ed7f8e76 422 Pfam PF02447 GntP family permease 11 416 3.1E-18 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_0394 2202ae0ef8b5413e8e7ed0b417786798 186 Pfam PF13302 Acetyltransferase (GNAT) domain 7 132 9.6E-13 T 13-10-2018 IPR000182 GNAT domain BMD_0394 2202ae0ef8b5413e8e7ed0b417786798 186 Gene3D G3DSA:3.40.630.30 1 168 8.8E-22 T 13-10-2018 BMD_0394 2202ae0ef8b5413e8e7ed0b417786798 186 SUPERFAMILY SSF55729 2 136 4.19E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2170 91c064bfc8e01b8b7308f2d6da4717fe 209 SUPERFAMILY SSF53474 7 203 1.12E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2170 91c064bfc8e01b8b7308f2d6da4717fe 209 PIRSF PIRSF033634 1 209 7.1E-49 T 13-10-2018 IPR017018 Uncharacterised conserved protein UCP033634 BMD_2170 91c064bfc8e01b8b7308f2d6da4717fe 209 Gene3D G3DSA:3.40.50.1820 8 195 3.4E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2155 d12392d40e95facd1466b8d2b7980b82 41 SUPERFAMILY SSF47406 8 35 6.28E-10 T 13-10-2018 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily GO:0006355|GO:0046983 BMD_2155 d12392d40e95facd1466b8d2b7980b82 41 Pfam PF08671 Anti-repressor SinI 9 35 4.5E-14 T 13-10-2018 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain GO:0006355|GO:0046983 BMD_1132 88c85d4c95161fb8a651a7d560a23d06 524 PIRSF PIRSF006429 1 521 1.2E-156 T 13-10-2018 IPR024188 Glutamate synthase large subunit-like protein BMD_1132 88c85d4c95161fb8a651a7d560a23d06 524 PIRSF PIRSF500060 1 522 6.4E-210 T 13-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria BMD_1132 88c85d4c95161fb8a651a7d560a23d06 524 Pfam PF01645 Conserved region in glutamate synthase 117 493 3.6E-110 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 BMD_1132 88c85d4c95161fb8a651a7d560a23d06 524 SUPERFAMILY SSF51395 7 510 1.4E-107 T 13-10-2018 BMD_1132 88c85d4c95161fb8a651a7d560a23d06 524 Gene3D G3DSA:3.20.20.70 115 521 8.3E-102 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0148 503ac7ac897a01dcf92e57039514a89e 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 32.999 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0148 503ac7ac897a01dcf92e57039514a89e 132 ProSitePatterns PS00053 Ribosomal protein S8 signature. 102 119 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0148 503ac7ac897a01dcf92e57039514a89e 132 Gene3D G3DSA:3.30.1490.10 75 132 2.4E-27 T 13-10-2018 BMD_0148 503ac7ac897a01dcf92e57039514a89e 132 Pfam PF00410 Ribosomal protein S8 5 132 1.2E-54 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0148 503ac7ac897a01dcf92e57039514a89e 132 SUPERFAMILY SSF56047 2 132 9.03E-50 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0148 503ac7ac897a01dcf92e57039514a89e 132 Gene3D G3DSA:3.30.1370.30 4 74 5.8E-33 T 13-10-2018 BMD_0384 d99732a2b185d39fd6a0cc5892b00101 266 Pfam PF14167 YfkD-like protein 35 266 5.0E-112 T 13-10-2018 IPR025548 YfkD-like protein BMD_1314 14c86dba548b751485b23cf64f5e9d4f 182 Pfam PF00578 AhpC/TSA family 6 141 1.9E-37 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_1314 14c86dba548b751485b23cf64f5e9d4f 182 Gene3D G3DSA:3.40.30.10 1 182 2.4E-72 T 13-10-2018 BMD_1314 14c86dba548b751485b23cf64f5e9d4f 182 PIRSF PIRSF000239 1 182 8.9E-58 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_1314 14c86dba548b751485b23cf64f5e9d4f 182 SUPERFAMILY SSF52833 5 180 2.75E-57 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4980 ea1a964624703b69271bc207e953ed8d 261 SMART SM00382 30 225 3.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4980 ea1a964624703b69271bc207e953ed8d 261 SUPERFAMILY SSF52540 6 233 2.86E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4980 ea1a964624703b69271bc207e953ed8d 261 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4980 ea1a964624703b69271bc207e953ed8d 261 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 6 246 1.3E-113 T 13-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 BMD_4980 ea1a964624703b69271bc207e953ed8d 261 Pfam PF00005 ABC transporter 21 173 2.2E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_4980 ea1a964624703b69271bc207e953ed8d 261 Gene3D G3DSA:3.40.50.300 5 250 3.4E-56 T 13-10-2018 BMD_0075 7a7acf77a12b8eb5c6e438e67cb9d518 534 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 362 508 5.9E-27 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain BMD_0075 7a7acf77a12b8eb5c6e438e67cb9d518 534 PIRSF PIRSF038958 2 525 7.1E-84 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type BMD_0075 7a7acf77a12b8eb5c6e438e67cb9d518 534 Pfam PF01943 Polysaccharide biosynthesis protein 12 310 3.4E-35 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BMD_4219 2d1ab7b97ea4bd83258067fe4e80c6fc 215 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 25 125 7.9E-19 T 13-10-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 BMD_4219 2d1ab7b97ea4bd83258067fe4e80c6fc 215 SUPERFAMILY SSF63999 3 128 4.05E-31 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 BMD_4219 2d1ab7b97ea4bd83258067fe4e80c6fc 215 SMART SM00983 139 205 9.6E-21 T 13-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 BMD_4219 2d1ab7b97ea4bd83258067fe4e80c6fc 215 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 5 207 2.8E-60 T 13-10-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 BMD_4219 2d1ab7b97ea4bd83258067fe4e80c6fc 215 SUPERFAMILY SSF63862 130 209 4.58E-14 T 13-10-2018 IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 BMD_4219 2d1ab7b97ea4bd83258067fe4e80c6fc 215 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 142 204 1.8E-16 T 13-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 BMD_4219 2d1ab7b97ea4bd83258067fe4e80c6fc 215 Gene3D G3DSA:3.40.50.10240 1 214 4.3E-71 T 13-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 BMD_3245 0a097aa7ebe12d8e96cf8b1d59b35320 146 Pfam PF07486 Cell Wall Hydrolase 24 133 1.4E-16 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_3245 0a097aa7ebe12d8e96cf8b1d59b35320 146 Gene3D G3DSA:1.10.10.2520 8 96 2.5E-11 T 13-10-2018 BMD_2473 14893ec791b1606f7bb236bb3f68f8b9 158 Pfam PF00583 Acetyltransferase (GNAT) family 50 134 3.4E-15 T 13-10-2018 IPR000182 GNAT domain BMD_2473 14893ec791b1606f7bb236bb3f68f8b9 158 SUPERFAMILY SSF55729 1 136 6.52E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2473 14893ec791b1606f7bb236bb3f68f8b9 158 Gene3D G3DSA:3.40.630.30 1 142 9.1E-27 T 13-10-2018 BMD_2724 ba1790a4774c4c48e86c8da16c453386 144 Pfam PF14568 SMI1-KNR4 cell-wall 20 130 1.0E-10 T 13-10-2018 BMD_2724 ba1790a4774c4c48e86c8da16c453386 144 SUPERFAMILY SSF160631 15 141 1.44E-12 T 13-10-2018 BMD_2724 ba1790a4774c4c48e86c8da16c453386 144 Gene3D G3DSA:3.40.1580.10 4 142 5.2E-12 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily BMD_2724 ba1790a4774c4c48e86c8da16c453386 144 SMART SM00860 16 132 1.4E-7 T 13-10-2018 IPR018958 Knr4/Smi1-like domain BMD_1918 2e3f14b5f853afcb96d6f7274eaaf3f8 247 Gene3D G3DSA:3.40.50.10990 55 220 1.4E-50 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1918 2e3f14b5f853afcb96d6f7274eaaf3f8 247 SUPERFAMILY SSF142695 74 220 7.98E-43 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_1918 2e3f14b5f853afcb96d6f7274eaaf3f8 247 Pfam PF00925 GTP cyclohydrolase II 74 217 1.3E-43 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BMD_2344 cec17a561b1fd72226b9781f8c6a5cdf 153 SUPERFAMILY SSF55729 19 146 2.35E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2344 cec17a561b1fd72226b9781f8c6a5cdf 153 Gene3D G3DSA:3.40.630.30 5 152 6.0E-28 T 13-10-2018 BMD_2344 cec17a561b1fd72226b9781f8c6a5cdf 153 Pfam PF00583 Acetyltransferase (GNAT) family 18 142 1.6E-14 T 13-10-2018 IPR000182 GNAT domain BMD_2841 3bf656f9699dbcf84b2b75b3a0e19e50 390 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 366 2.3E-96 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BMD_2841 3bf656f9699dbcf84b2b75b3a0e19e50 390 SUPERFAMILY SSF56796 1 388 1.05E-108 T 13-10-2018 BMD_2841 3bf656f9699dbcf84b2b75b3a0e19e50 390 Gene3D G3DSA:1.20.1090.10 187 389 1.7E-45 T 13-10-2018 BMD_2841 3bf656f9699dbcf84b2b75b3a0e19e50 390 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 267 287 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BMD_2841 3bf656f9699dbcf84b2b75b3a0e19e50 390 Gene3D G3DSA:3.40.50.1970 4 186 2.1E-51 T 13-10-2018 BMD_0518 5154c2d51130539d2223050912f3a0a7 131 PIRSF PIRSF022536 1 131 8.0E-34 T 13-10-2018 IPR009207 Histone methyltransferase, PBCV type putative KEGG: 00310+2.1.1.43 BMD_0518 5154c2d51130539d2223050912f3a0a7 131 Gene3D G3DSA:2.170.270.10 1 114 3.2E-30 T 13-10-2018 BMD_0518 5154c2d51130539d2223050912f3a0a7 131 SUPERFAMILY SSF82199 12 114 3.79E-23 T 13-10-2018 BMD_0518 5154c2d51130539d2223050912f3a0a7 131 Pfam PF00856 SET domain 16 111 2.1E-13 T 13-10-2018 IPR001214 SET domain GO:0005515 BMD_0518 5154c2d51130539d2223050912f3a0a7 131 SMART SM00317 2 117 6.7E-7 T 13-10-2018 IPR001214 SET domain GO:0005515 BMD_2374 58195d0326a8a06495a803412e138d9d 339 Gene3D G3DSA:3.30.750.24 216 335 2.7E-25 T 13-10-2018 IPR036513 STAS domain superfamily BMD_4201 84f1185571a121c520f979cc6d7aafe2 90 Gene3D G3DSA:3.30.1320.10 1 90 1.5E-36 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4201 84f1185571a121c520f979cc6d7aafe2 90 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 24.431 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4201 84f1185571a121c520f979cc6d7aafe2 90 SUPERFAMILY SSF54565 2 86 4.45E-34 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4201 84f1185571a121c520f979cc6d7aafe2 90 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 5.2E-35 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4201 84f1185571a121c520f979cc6d7aafe2 90 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 13-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4201 84f1185571a121c520f979cc6d7aafe2 90 Pfam PF00886 Ribosomal protein S16 9 67 2.0E-25 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_3015 f27d1248bc7ac320f416275d74817095 93 SUPERFAMILY SSF89360 1 86 5.3E-10 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_3015 f27d1248bc7ac320f416275d74817095 93 Gene3D G3DSA:2.60.300.12 1 84 2.3E-6 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_4556 756ebc94d0330ab2f848ae533b47e24a 111 ProDom PD072942 YQXA ORF79 2 106 2.0E-15 T 13-10-2018 IPR020534 Uncharacterised protein family YqxA BMD_4556 756ebc94d0330ab2f848ae533b47e24a 111 Pfam PF12438 Protein of unknown function (DUF3679) 7 62 1.1E-19 T 13-10-2018 IPR020534 Uncharacterised protein family YqxA BMD_0917 b60720e36e0d2213283667c75c18a12d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 143 167 3.5E-12 T 13-10-2018 BMD_0917 b60720e36e0d2213283667c75c18a12d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 307 331 3.5E-12 T 13-10-2018 BMD_0917 b60720e36e0d2213283667c75c18a12d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 22 46 3.5E-12 T 13-10-2018 BMD_0917 b60720e36e0d2213283667c75c18a12d 541 PRINTS PR01036 Tetracycline resistance protein TetB signature 113 133 3.5E-12 T 13-10-2018 BMD_0917 b60720e36e0d2213283667c75c18a12d 541 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 508 1.8E-157 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BMD_0917 b60720e36e0d2213283667c75c18a12d 541 SUPERFAMILY SSF103473 9 514 9.02E-74 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0917 b60720e36e0d2213283667c75c18a12d 541 Pfam PF07690 Major Facilitator Superfamily 23 414 3.4E-52 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_0917 b60720e36e0d2213283667c75c18a12d 541 Gene3D G3DSA:1.20.1720.10 19 228 3.4E-46 T 13-10-2018 BMD_2557 25a17fe5dd671b760bafb2099ba0fc9b 279 Gene3D G3DSA:3.30.465.10 6 174 1.8E-34 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BMD_2557 25a17fe5dd671b760bafb2099ba0fc9b 279 Gene3D G3DSA:3.30.390.50 183 277 2.9E-6 T 13-10-2018 BMD_2557 25a17fe5dd671b760bafb2099ba0fc9b 279 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 7 171 2.6E-29 T 13-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 BMD_2557 25a17fe5dd671b760bafb2099ba0fc9b 279 SUPERFAMILY SSF56176 3 171 3.0E-36 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BMD_2557 25a17fe5dd671b760bafb2099ba0fc9b 279 SUPERFAMILY SSF55447 181 278 2.62E-14 T 13-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily BMD_2557 25a17fe5dd671b760bafb2099ba0fc9b 279 SMART SM01092 181 276 5.2E-9 T 13-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal BMD_1143 7bde7a9a2630cb85501c7b8211a310b1 278 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 160 170 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site BMD_1143 7bde7a9a2630cb85501c7b8211a310b1 278 Gene3D G3DSA:1.20.1080.10 1 264 1.6E-86 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BMD_1143 7bde7a9a2630cb85501c7b8211a310b1 278 Pfam PF01226 Formate/nitrite transporter 8 251 7.0E-71 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 BMD_2674 254a2feed827441930ccb59329ae2425 464 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 421 1.7E-63 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_2674 254a2feed827441930ccb59329ae2425 464 Pfam PF01554 MatE 247 407 2.1E-28 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_2674 254a2feed827441930ccb59329ae2425 464 Pfam PF01554 MatE 22 181 9.6E-25 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_2674 254a2feed827441930ccb59329ae2425 464 PIRSF PIRSF006603 4 457 1.2E-84 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 SMART SM00729 176 379 1.3E-22 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 Pfam PF13311 Protein of unknown function (DUF4080) 372 563 7.1E-43 T 13-10-2018 IPR025288 Domain of unknown function DUF4080 BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 SUPERFAMILY SSF102114 168 420 5.23E-39 T 13-10-2018 BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 Pfam PF02310 B12 binding domain 9 122 5.9E-19 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 SUPERFAMILY SSF52242 42 149 5.1E-10 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 Gene3D G3DSA:3.40.50.280 10 137 4.7E-10 T 13-10-2018 BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 Gene3D G3DSA:3.80.30.20 174 368 4.7E-20 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BMD_1220 cc65f7aabbe608a8aedd51221b548e24 589 Pfam PF04055 Radical SAM superfamily 180 344 1.7E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BMD_1698 df6bf35a96af62e2cca64a0028d3c5d4 223 Gene3D G3DSA:3.30.240.20 85 159 3.3E-26 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_1698 df6bf35a96af62e2cca64a0028d3c5d4 223 Gene3D G3DSA:3.30.240.20 167 223 2.0E-13 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_1698 df6bf35a96af62e2cca64a0028d3c5d4 223 Pfam PF04239 Protein of unknown function (DUF421) 93 200 3.6E-36 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_1788 1bc7a00b3ae168285edde5d361d3cb2a 363 TIGRFAM TIGR02271 TIGR02271: conserved domain 149 258 2.1E-35 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_1788 1bc7a00b3ae168285edde5d361d3cb2a 363 Pfam PF11181 Heat induced stress protein YflT 9 118 1.8E-15 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_1788 1bc7a00b3ae168285edde5d361d3cb2a 363 Pfam PF09557 Domain of unknown function (DUF2382) 149 256 4.0E-27 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 SUPERFAMILY SSF46785 953 1019 1.15E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 Gene3D G3DSA:3.30.980.40 557 660 6.3E-36 T 13-10-2018 BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 SUPERFAMILY SSF52540 638 929 6.37E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 Pfam PF01580 FtsK/SpoIIIE family 664 856 6.4E-66 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 Pfam PF09397 Ftsk gamma domain 955 1016 5.4E-29 T 13-10-2018 IPR018541 FtsK gamma domain BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 SMART SM00843 953 1018 1.8E-37 T 13-10-2018 IPR018541 FtsK gamma domain BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 SMART SM00382 699 877 2.7E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 Gene3D G3DSA:3.40.50.300 661 940 1.9E-114 T 13-10-2018 BMD_4812 60fa4f7e19e8ec169a3618e555be507a 1032 Gene3D G3DSA:1.10.10.10 945 1014 1.2E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4285 9123598c3e2a9e2d7a05bdffca8efe73 265 Pfam PF01734 Patatin-like phospholipase 9 164 5.1E-19 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BMD_4285 9123598c3e2a9e2d7a05bdffca8efe73 265 Gene3D G3DSA:3.40.1090.10 1 105 1.3E-24 T 13-10-2018 BMD_4285 9123598c3e2a9e2d7a05bdffca8efe73 265 ProSitePatterns PS01237 Uncharacterized protein family UPF0028 signature. 11 43 - T 13-10-2018 IPR001423 Lysophospholipase patatin, conserved site GO:0004622|GO:0046470 Reactome: R-HSA-6814848 BMD_4285 9123598c3e2a9e2d7a05bdffca8efe73 265 SUPERFAMILY SSF52151 3 250 5.49E-57 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BMD_2923 d08af7a66a95359e203bf8f2f7be9e4b 391 Pfam PF12051 Protein of unknown function (DUF3533) 15 348 1.1E-25 T 13-10-2018 IPR022703 Domain of unknown function DUF3533 BMD_4480 6abb9976e5320cd8a2361d15a1898bbc 348 Gene3D G3DSA:1.20.81.30 201 310 1.4E-8 T 13-10-2018 BMD_4480 6abb9976e5320cd8a2361d15a1898bbc 348 PRINTS PR00812 Bacterial general secretion pathway protein F signature 15 27 7.4E-9 T 13-10-2018 IPR003004 GspF/PilC family BMD_4480 6abb9976e5320cd8a2361d15a1898bbc 348 PRINTS PR00812 Bacterial general secretion pathway protein F signature 111 139 7.4E-9 T 13-10-2018 IPR003004 GspF/PilC family BMD_4480 6abb9976e5320cd8a2361d15a1898bbc 348 PRINTS PR00812 Bacterial general secretion pathway protein F signature 329 348 7.4E-9 T 13-10-2018 IPR003004 GspF/PilC family BMD_4480 6abb9976e5320cd8a2361d15a1898bbc 348 Gene3D G3DSA:1.20.81.30 5 116 5.3E-15 T 13-10-2018 BMD_4480 6abb9976e5320cd8a2361d15a1898bbc 348 Pfam PF00482 Type II secretion system (T2SS), protein F 20 139 7.1E-16 T 13-10-2018 IPR018076 Type II secretion system F domain BMD_4480 6abb9976e5320cd8a2361d15a1898bbc 348 Pfam PF00482 Type II secretion system (T2SS), protein F 220 340 7.7E-13 T 13-10-2018 IPR018076 Type II secretion system F domain BMD_1245 922beddf7c89266ee243524fd88c5429 156 SUPERFAMILY SSF46785 9 149 5.75E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1245 922beddf7c89266ee243524fd88c5429 156 SMART SM00347 33 133 5.1E-26 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1245 922beddf7c89266ee243524fd88c5429 156 Gene3D G3DSA:1.10.10.10 1 150 4.6E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1245 922beddf7c89266ee243524fd88c5429 156 ProSitePatterns PS01117 MarR-type HTH domain signature. 72 106 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BMD_1245 922beddf7c89266ee243524fd88c5429 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 123 143 1.4E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1245 922beddf7c89266ee243524fd88c5429 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 93 109 1.4E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1245 922beddf7c89266ee243524fd88c5429 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 74 89 1.4E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1245 922beddf7c89266ee243524fd88c5429 156 Pfam PF01047 MarR family 41 97 1.7E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1798 58dfb20dba794ee2d3d67873d7111468 209 SUPERFAMILY SSF52218 1 193 3.42E-28 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_1798 58dfb20dba794ee2d3d67873d7111468 209 Pfam PF03358 NADPH-dependent FMN reductase 4 156 4.0E-17 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BMD_1798 58dfb20dba794ee2d3d67873d7111468 209 Gene3D G3DSA:3.40.50.360 4 192 2.5E-20 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2819 f8ea8b7a31ec0800addb3c9f894a7888 108 SUPERFAMILY SSF101386 31 89 3.18E-7 T 13-10-2018 BMD_2819 f8ea8b7a31ec0800addb3c9f894a7888 108 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 31 82 7.2E-5 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 BMD_0776 96adfbe347723ae22f01025e01897ab1 144 Pfam PF03788 LrgA family 21 112 2.9E-25 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 BMD_0725 0f38cca3c4db6e9e1ae1ccf8fed23a2d 136 Pfam PF01152 Bacterial-like globin 9 123 6.1E-34 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 BMD_0725 0f38cca3c4db6e9e1ae1ccf8fed23a2d 136 ProSitePatterns PS01213 Protozoan/cyanobacterial globins signature. 53 77 - T 13-10-2018 IPR019795 Globin, bacterial-like, conserved site GO:0015671|GO:0019825 BMD_0725 0f38cca3c4db6e9e1ae1ccf8fed23a2d 136 Gene3D G3DSA:1.10.490.10 3 130 6.8E-50 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BMD_0725 0f38cca3c4db6e9e1ae1ccf8fed23a2d 136 SUPERFAMILY SSF46458 7 124 3.02E-39 T 13-10-2018 IPR009050 Globin-like superfamily BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 Gene3D G3DSA:1.10.10.10 1 91 7.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 7.7E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 SUPERFAMILY SSF46785 1 84 1.13E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 Gene3D G3DSA:3.40.190.290 92 299 5.4E-49 T 13-10-2018 BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 Pfam PF03466 LysR substrate binding domain 89 294 3.1E-44 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_2304 9a08a9f02fa75be88e4aa8f6c499372c 303 SUPERFAMILY SSF53850 90 294 1.45E-39 T 13-10-2018 BMD_4695 bd4bea7f35df50c6a94ec1ec0a74df06 332 Pfam PF01384 Phosphate transporter family 22 320 1.2E-89 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 BMD_2579 61cefdb09b0f8e64b3832e47c50a35d6 276 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 6 258 1.6E-44 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_2579 61cefdb09b0f8e64b3832e47c50a35d6 276 PIRSF PIRSF035875 2 270 2.7E-63 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_2579 61cefdb09b0f8e64b3832e47c50a35d6 276 Pfam PF03631 Virulence factor BrkB 16 258 1.6E-58 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_1967 a2acf3dc1c28326e71a09f4a582f686e 220 TIGRFAM TIGR04000 thiol_BshB2: bacillithiol biosynthesis deacetylase BshB2 4 219 3.5E-97 T 13-10-2018 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 BMD_1967 a2acf3dc1c28326e71a09f4a582f686e 220 Pfam PF02585 GlcNAc-PI de-N-acetylase 6 135 3.4E-27 T 13-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 BMD_1967 a2acf3dc1c28326e71a09f4a582f686e 220 Gene3D G3DSA:3.40.50.10320 1 215 3.5E-47 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 BMD_1967 a2acf3dc1c28326e71a09f4a582f686e 220 SUPERFAMILY SSF102588 2 218 1.1E-48 T 13-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 PIRSF PIRSF000447 1 413 5.1E-189 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 409 1.2E-201 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 368 1.2E-40 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 Gene3D G3DSA:3.40.47.10 256 400 3.1E-57 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 SMART SM00825 Beta-ketoacyl synthase 6 413 7.0E-18 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 246 8.8E-61 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 Gene3D G3DSA:3.40.47.10 1 254 2.1E-106 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 SUPERFAMILY SSF53901 214 411 2.71E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site BMD_0697 45ae978e8527903c7fb367e64f831e2a 413 SUPERFAMILY SSF53901 4 251 4.61E-76 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 BMD_2820 bfe45c08242bf875ec95724fcb701dcb 185 Gene3D G3DSA:3.20.20.80 1 185 3.0E-65 T 13-10-2018 BMD_2820 bfe45c08242bf875ec95724fcb701dcb 185 SUPERFAMILY SSF51445 2 183 5.26E-42 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_2820 bfe45c08242bf875ec95724fcb701dcb 185 Pfam PF01183 Glycosyl hydrolases family 25 4 162 5.1E-37 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 BMD_3303 4514aa3e3cd4e2d19385ae851391de18 88 ProSitePatterns PS00669 Gas vesicles protein GVPa signature 2. 45 58 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 BMD_3303 4514aa3e3cd4e2d19385ae851391de18 88 Pfam PF00741 Gas vesicle protein 11 49 1.1E-15 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 BMD_3303 4514aa3e3cd4e2d19385ae851391de18 88 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 12 26 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 BMD_3303 4514aa3e3cd4e2d19385ae851391de18 88 Hamap MF_00576 Gas vesicle structural protein [gvpA]. 4 87 24.799 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 BMD_0894 df0fca1cba58d04f030ab2ecd7a67279 107 Pfam PF11588 Protein of unknown function (DUF3243) 30 106 6.6E-27 T 13-10-2018 IPR021637 Protein of unknown function DUF3243 BMD_0894 df0fca1cba58d04f030ab2ecd7a67279 107 Gene3D G3DSA:1.10.760.20 25 107 1.4E-29 T 13-10-2018 IPR038292 YmfJ/YflH superfamily BMD_3772 3c5dc4d2938f0c8c7239903f2076b68f 176 Pfam PF12867 DinB superfamily 31 163 3.0E-19 T 13-10-2018 IPR024775 DinB-like domain BMD_3772 3c5dc4d2938f0c8c7239903f2076b68f 176 Hamap MF_01256 Putative metal-dependent hydrolase . 1 173 35.903 T 13-10-2018 IPR023774 Putative metal-dependent hydrolase YfiT BMD_3772 3c5dc4d2938f0c8c7239903f2076b68f 176 Gene3D G3DSA:1.20.120.450 2 173 1.0E-50 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_3772 3c5dc4d2938f0c8c7239903f2076b68f 176 SUPERFAMILY SSF109854 4 173 4.12E-45 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2433 32f0866ee017f2c77a235de963584bbe 214 Pfam PF13460 NAD(P)H-binding 7 190 1.4E-49 T 13-10-2018 IPR016040 NAD(P)-binding domain BMD_2433 32f0866ee017f2c77a235de963584bbe 214 SUPERFAMILY SSF51735 1 205 1.31E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2433 32f0866ee017f2c77a235de963584bbe 214 Gene3D G3DSA:3.40.50.720 2 214 4.0E-55 T 13-10-2018 BMD_1576 94832b2917d9f7c25fc860b06ccefcdc 233 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 15 117 2.1E-19 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_1576 94832b2917d9f7c25fc860b06ccefcdc 233 SUPERFAMILY SSF161098 19 210 2.35E-38 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1576 94832b2917d9f7c25fc860b06ccefcdc 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 225 5.4E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1576 94832b2917d9f7c25fc860b06ccefcdc 233 Gene3D G3DSA:1.10.3720.10 2 229 1.0E-47 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1432 1aaa6892d981023cec8e8e05165ca7e9 197 SUPERFAMILY SSF53271 1 189 2.34E-42 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_1432 1aaa6892d981023cec8e8e05165ca7e9 197 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 1 190 2.0E-82 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 BMD_1432 1aaa6892d981023cec8e8e05165ca7e9 197 Pfam PF00156 Phosphoribosyl transferase domain 37 156 6.2E-7 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_1432 1aaa6892d981023cec8e8e05165ca7e9 197 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 41.507 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 BMD_1432 1aaa6892d981023cec8e8e05165ca7e9 197 Gene3D G3DSA:3.40.50.2020 3 188 1.8E-51 T 13-10-2018 BMD_0953 650de12642260ad5fee9690261008146 476 Gene3D G3DSA:3.40.309.10 253 442 2.2E-147 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_0953 650de12642260ad5fee9690261008146 476 SUPERFAMILY SSF53720 4 474 1.3E-139 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_0953 650de12642260ad5fee9690261008146 476 Pfam PF00171 Aldehyde dehydrogenase family 14 471 9.6E-151 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_0953 650de12642260ad5fee9690261008146 476 Gene3D G3DSA:3.40.605.10 31 459 2.2E-147 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_2723 5fdc2c077791bb59ea42ac76e11c6501 293 PIRSF PIRSF030850 1 283 7.6E-72 T 13-10-2018 IPR011396 Uncharacterised conserved protein UCP030850 BMD_2723 5fdc2c077791bb59ea42ac76e11c6501 293 Pfam PF13391 HNH endonuclease 175 228 3.3E-9 T 13-10-2018 IPR003615 HNH nuclease BMD_0146 cf52a399bf0b215d2e03a4ef7621570f 179 SUPERFAMILY SSF55282 3 178 8.95E-78 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0146 cf52a399bf0b215d2e03a4ef7621570f 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 7.2E-42 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0146 cf52a399bf0b215d2e03a4ef7621570f 179 PIRSF PIRSF002161 1 179 6.6E-69 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0146 cf52a399bf0b215d2e03a4ef7621570f 179 Pfam PF00281 Ribosomal protein L5 24 80 2.5E-29 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0146 cf52a399bf0b215d2e03a4ef7621570f 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_0146 cf52a399bf0b215d2e03a4ef7621570f 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 45.184 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_0146 cf52a399bf0b215d2e03a4ef7621570f 179 Gene3D G3DSA:3.30.1440.10 1 179 3.9E-83 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BMD_4582 361952812a90c58c7ede7247b5893b88 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 230 1.8E-114 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4582 361952812a90c58c7ede7247b5893b88 231 SUPERFAMILY SSF53167 1 230 4.58E-73 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BMD_4582 361952812a90c58c7ede7247b5893b88 231 Gene3D G3DSA:3.40.50.1580 1 231 3.6E-71 T 13-10-2018 BMD_4582 361952812a90c58c7ede7247b5893b88 231 Pfam PF01048 Phosphorylase superfamily 2 227 5.5E-53 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BMD_4582 361952812a90c58c7ede7247b5893b88 231 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 48.071 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 SMART SM00411 1 90 1.6E-51 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.0E-39 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 SUPERFAMILY SSF47729 1 90 4.56E-36 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 Gene3D G3DSA:4.10.520.10 1 90 7.9E-42 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.7E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.7E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.7E-22 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_4320 d6474c1c7681bb1e7df7f496f30d0f65 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 1.4E-38 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 174 189 1.4E-38 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 319 1.4E-38 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.4E-38 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 337 355 1.4E-38 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 319 335 1.4E-38 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 SUPERFAMILY SSF51905 6 374 2.12E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 Gene3D G3DSA:3.30.9.50 74 301 2.2E-107 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 Gene3D G3DSA:3.40.30.120 396 538 1.5E-46 T 13-10-2018 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 Pfam PF01494 FAD binding domain 6 367 3.8E-93 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 BMD_3614 f23f83bd014b2f1fcf11511166dcd378 538 Gene3D G3DSA:3.50.50.60 7 363 2.2E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1319 dc39b4af2812523790ef965b146b8ff8 220 Pfam PF02080 TrkA-C domain 150 217 3.9E-16 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BMD_1319 dc39b4af2812523790ef965b146b8ff8 220 Gene3D G3DSA:3.30.70.1450 138 217 7.7E-28 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_1319 dc39b4af2812523790ef965b146b8ff8 220 SUPERFAMILY SSF51735 4 134 3.61E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1319 dc39b4af2812523790ef965b146b8ff8 220 SUPERFAMILY SSF116726 131 217 5.23E-21 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_1319 dc39b4af2812523790ef965b146b8ff8 220 Gene3D G3DSA:3.40.50.720 1 137 5.5E-38 T 13-10-2018 BMD_1319 dc39b4af2812523790ef965b146b8ff8 220 Pfam PF02254 TrkA-N domain 5 120 3.8E-29 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 Gene3D G3DSA:1.10.10.10 1 88 4.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 SUPERFAMILY SSF46785 2 87 8.94E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 Pfam PF03466 LysR substrate binding domain 91 285 4.3E-36 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 Gene3D G3DSA:3.40.190.290 92 292 1.0E-43 T 13-10-2018 BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.8E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.8E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.8E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 1.3E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_0715 c3ee906fee94d8b6ee396d5a2e020d0e 298 SUPERFAMILY SSF53850 97 290 2.64E-34 T 13-10-2018 BMD_2221 8f65db4f7b3654c94ad7d3d6242ec05b 715 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 11 173 6.3E-45 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal BMD_2221 8f65db4f7b3654c94ad7d3d6242ec05b 715 Pfam PF12698 ABC-2 family transporter protein 22 691 1.7E-12 T 13-10-2018 BMD_2221 8f65db4f7b3654c94ad7d3d6242ec05b 715 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 495 694 4.2E-49 T 13-10-2018 IPR017501 Phage infection protein, YhgE, C-terminal BMD_4781 c85f6e8f018739ee1d714ac102f67f70 164 ProSitePatterns PS01265 Tpx family signature. 81 92 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 BMD_4781 c85f6e8f018739ee1d714ac102f67f70 164 SUPERFAMILY SSF52833 3 158 9.35E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4781 c85f6e8f018739ee1d714ac102f67f70 164 Gene3D G3DSA:3.40.30.10 1 163 4.4E-49 T 13-10-2018 BMD_4781 c85f6e8f018739ee1d714ac102f67f70 164 Pfam PF08534 Redoxin 17 157 1.8E-24 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BMD_4781 c85f6e8f018739ee1d714ac102f67f70 164 Hamap MF_00269 Thiol peroxidase [tpx]. 1 161 37.969 T 13-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 BMD_1331 14d319f29a1d5a72ad05a25c34d5747a 288 ProSitePatterns PS01303 BCCT family of transporters signature. 95 104 - T 13-10-2018 IPR018093 BCCT transporter, conserved site BMD_1331 14d319f29a1d5a72ad05a25c34d5747a 288 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 5 278 2.6E-106 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 BMD_0961 fae9d74dfe1724a4f824851611b3d7e0 332 SUPERFAMILY SSF50891 196 310 5.31E-13 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0961 fae9d74dfe1724a4f824851611b3d7e0 332 Gene3D G3DSA:2.40.100.10 193 331 1.2E-53 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0961 fae9d74dfe1724a4f824851611b3d7e0 332 SMART SM00797 24 320 1.9E-133 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_0961 fae9d74dfe1724a4f824851611b3d7e0 332 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 303 1.1E-93 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_0961 fae9d74dfe1724a4f824851611b3d7e0 332 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 329 2.7E-100 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BMD_0693 e627bcf7caa9c07d206f877896064f86 246 Gene3D G3DSA:3.40.50.1820 31 218 2.9E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0693 e627bcf7caa9c07d206f877896064f86 246 SUPERFAMILY SSF53474 47 149 8.48E-9 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2481 f00b10785ffeaa62461a361e1cfd4670 173 Gene3D G3DSA:3.40.630.30 14 162 6.7E-19 T 13-10-2018 BMD_2481 f00b10785ffeaa62461a361e1cfd4670 173 SUPERFAMILY SSF55729 21 163 5.87E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2481 f00b10785ffeaa62461a361e1cfd4670 173 Pfam PF00583 Acetyltransferase (GNAT) family 52 153 1.1E-9 T 13-10-2018 IPR000182 GNAT domain BMD_0397 e317db9a00071a3a50cdf44cbdc66f2d 269 Gene3D G3DSA:1.10.10.10 112 156 4.0E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0397 e317db9a00071a3a50cdf44cbdc66f2d 269 Hamap MF_01114 Regulatory protein RecX [recX]. 46 213 17.852 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 BMD_0397 e317db9a00071a3a50cdf44cbdc66f2d 269 Gene3D G3DSA:1.10.10.2800 1 111 3.3E-37 T 13-10-2018 BMD_0397 e317db9a00071a3a50cdf44cbdc66f2d 269 Pfam PF02631 RecX family 88 211 4.0E-30 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 BMD_0397 e317db9a00071a3a50cdf44cbdc66f2d 269 Gene3D G3DSA:1.10.10.10 157 218 6.4E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0397 e317db9a00071a3a50cdf44cbdc66f2d 269 Gene3D G3DSA:1.10.10.10 219 269 2.8E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0480 1d2bf9b05d72ddf73e5e5ab53a9a7223 42 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 17 38 1.1E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_0480 1d2bf9b05d72ddf73e5e5ab53a9a7223 42 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 16 38 5.1E-11 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_5156 433cd04a57c99d97d983242b5982dda5 208 PIRSF PIRSF035805 6 202 2.2E-69 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BMD_5156 433cd04a57c99d97d983242b5982dda5 208 SUPERFAMILY SSF52540 9 143 2.27E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_5156 433cd04a57c99d97d983242b5982dda5 208 SUPERFAMILY SSF57716 143 193 3.23E-16 T 13-10-2018 BMD_5156 433cd04a57c99d97d983242b5982dda5 208 Gene3D G3DSA:3.40.50.300 1 142 1.9E-61 T 13-10-2018 BMD_5156 433cd04a57c99d97d983242b5982dda5 208 Gene3D G3DSA:3.30.60.20 143 195 7.2E-27 T 13-10-2018 BMD_5156 433cd04a57c99d97d983242b5982dda5 208 Pfam PF00265 Thymidine kinase 9 188 8.1E-61 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BMD_5156 433cd04a57c99d97d983242b5982dda5 208 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 175 188 - T 13-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BMD_5156 433cd04a57c99d97d983242b5982dda5 208 Hamap MF_00124 Thymidine kinase [tdk]. 8 191 38.4 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BMD_3740 54c717b528a4e148920da6550eb04629 172 SUPERFAMILY SSF50891 55 170 9.1E-25 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_3740 54c717b528a4e148920da6550eb04629 172 Gene3D G3DSA:2.40.100.20 54 170 1.1E-16 T 13-10-2018 BMD_3740 54c717b528a4e148920da6550eb04629 172 Pfam PF04126 Cyclophilin-like 55 167 2.3E-4 T 13-10-2018 IPR025658 Cyclophilin TM1367-like domain BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 SUPERFAMILY SSF118215 8 403 5.89E-126 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 297 320 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 Pfam PF00375 Sodium:dicarboxylate symporter family 8 402 7.1E-125 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 Gene3D G3DSA:1.10.3860.10 1 419 2.0E-134 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 37 52 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 1.7E-36 T 13-10-2018 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 1.7E-36 T 13-10-2018 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 1.7E-36 T 13-10-2018 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 1.7E-36 T 13-10-2018 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 PRINTS PR00173 Glutamate-aspartate symporter signature 75 100 1.7E-36 T 13-10-2018 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 1.7E-36 T 13-10-2018 BMD_1062 0cc84b95bc6dcbb957fa067d15212c05 423 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 1.7E-36 T 13-10-2018 BMD_2442 409f1f6128be72d40f915a13522a5b5d 388 Gene3D G3DSA:2.60.120.380 89 211 3.1E-9 T 13-10-2018 BMD_2442 409f1f6128be72d40f915a13522a5b5d 388 Gene3D G3DSA:2.60.40.10 221 296 1.4E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_2442 409f1f6128be72d40f915a13522a5b5d 388 Gene3D G3DSA:2.60.40.10 306 381 8.0E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1071 5f73cdaafcd0064e9427edfe2f0f051e 451 Pfam PF02040 Arsenical pump membrane protein 7 446 1.2E-68 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1071 5f73cdaafcd0064e9427edfe2f0f051e 451 PRINTS PR00758 Arsenical pump membrane protein signature 148 172 2.0E-24 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1071 5f73cdaafcd0064e9427edfe2f0f051e 451 PRINTS PR00758 Arsenical pump membrane protein signature 418 442 2.0E-24 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1071 5f73cdaafcd0064e9427edfe2f0f051e 451 PRINTS PR00758 Arsenical pump membrane protein signature 105 129 2.0E-24 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1071 5f73cdaafcd0064e9427edfe2f0f051e 451 PRINTS PR00758 Arsenical pump membrane protein signature 385 410 2.0E-24 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_3757 284c37c6a164f83bd736b171d6e70083 133 SUPERFAMILY SSF53474 7 124 8.9E-16 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_3757 284c37c6a164f83bd736b171d6e70083 133 Pfam PF00561 alpha/beta hydrolase fold 7 65 1.8E-6 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_3757 284c37c6a164f83bd736b171d6e70083 133 Gene3D G3DSA:3.40.50.1820 1 133 9.5E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_2569 5400699ffc7ce2dc427360d0e2110f69 231 SUPERFAMILY SSF53335 13 214 2.67E-9 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_1673 54b0783287bab0ecef6721b48e1315fe 165 Pfam PF12867 DinB superfamily 28 146 5.1E-8 T 13-10-2018 IPR024775 DinB-like domain BMD_1673 54b0783287bab0ecef6721b48e1315fe 165 Gene3D G3DSA:1.20.120.450 10 154 4.5E-11 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_1673 54b0783287bab0ecef6721b48e1315fe 165 SUPERFAMILY SSF109854 24 160 5.49E-15 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 SUPERFAMILY SSF51735 11 256 6.63E-83 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 Gene3D G3DSA:3.40.50.720 1 257 1.5E-83 T 13-10-2018 BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 185 0.0086 T 13-10-2018 BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 21 255 1.5E-62 T 13-10-2018 BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 2.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 2.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 2.2E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 1.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2316 a9c594b7c5f389886f85f78ac2cf2ef6 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 1.1E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_4803 2711fd53a831557c90b4fb13bff41672 267 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 190 207 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site BMD_4803 2711fd53a831557c90b4fb13bff41672 267 Pfam PF01618 MotA/TolQ/ExbB proton channel family 106 219 2.2E-21 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BMD_0676 99c0eeed8e930e769b4e1a99edb7e781 102 SUPERFAMILY SSF117916 3 100 1.73E-32 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BMD_0676 99c0eeed8e930e769b4e1a99edb7e781 102 Pfam PF01883 Iron-sulfur cluster assembly protein 6 79 1.2E-21 T 13-10-2018 IPR002744 MIP18 family-like BMD_0676 99c0eeed8e930e769b4e1a99edb7e781 102 Gene3D G3DSA:3.30.300.130 1 102 2.7E-37 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.9E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.9E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.9E-11 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 Pfam PF03466 LysR substrate binding domain 88 290 5.2E-47 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 Gene3D G3DSA:3.40.190.290 92 295 2.7E-56 T 13-10-2018 BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 Gene3D G3DSA:1.10.10.10 1 91 1.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 SUPERFAMILY SSF46785 1 86 5.38E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.7E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3079 5d91cf643f28bc22bfbc734fd4dfdf24 304 SUPERFAMILY SSF53850 89 291 9.87E-42 T 13-10-2018 BMD_3432 3ef181b47b607c9596fda0be51380ef8 156 SUPERFAMILY SSF109915 16 93 8.63E-6 T 13-10-2018 IPR035945 YhaI-like superfamily BMD_3432 3ef181b47b607c9596fda0be51380ef8 156 Gene3D G3DSA:1.10.3750.10 13 104 3.6E-6 T 13-10-2018 IPR035945 YhaI-like superfamily BMD_3432 3ef181b47b607c9596fda0be51380ef8 156 Pfam PF08963 Protein of unknown function (DUF1878) 18 94 1.5E-5 T 13-10-2018 IPR015058 Protein of unknown function DUF1878 BMD_1070 70d07a5f35c4ed31a739bc0ee8443106 52 SMART SM00914 12 48 5.3E-4 T 13-10-2018 IPR014957 IDEAL domain BMD_1070 70d07a5f35c4ed31a739bc0ee8443106 52 Pfam PF08858 IDEAL domain 12 48 6.5E-13 T 13-10-2018 IPR014957 IDEAL domain BMD_1070 70d07a5f35c4ed31a739bc0ee8443106 52 Gene3D G3DSA:4.10.810.10 2 52 6.4E-14 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_3829 d3a3d8b069e0bcbaca66a02c84f14939 244 SUPERFAMILY SSF53335 8 214 3.32E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_3829 d3a3d8b069e0bcbaca66a02c84f14939 244 Gene3D G3DSA:3.40.50.150 31 243 4.1E-51 T 13-10-2018 BMD_3829 d3a3d8b069e0bcbaca66a02c84f14939 244 Pfam PF13489 Methyltransferase domain 37 208 1.2E-17 T 13-10-2018 BMD_0866 2bcc68086b2a66d1aa648bad435db1e1 459 Pfam PF13520 Amino acid permease 12 406 4.7E-38 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0866 2bcc68086b2a66d1aa648bad435db1e1 459 Gene3D G3DSA:1.20.1740.10 7 451 3.7E-76 T 13-10-2018 BMD_0866 2bcc68086b2a66d1aa648bad435db1e1 459 PIRSF PIRSF006060 2 448 1.3E-75 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3964 48959a68fc9891b5ff3ece18fb10545b 308 SUPERFAMILY SSF103481 190 289 1.96E-13 T 13-10-2018 BMD_3964 48959a68fc9891b5ff3ece18fb10545b 308 Pfam PF00892 EamA-like transporter family 12 141 2.4E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3964 48959a68fc9891b5ff3ece18fb10545b 308 Pfam PF00892 EamA-like transporter family 154 287 1.6E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3964 48959a68fc9891b5ff3ece18fb10545b 308 SUPERFAMILY SSF103481 41 145 6.28E-16 T 13-10-2018 BMD_3932 a190d9e0792d5c94cfaf92d9a3a74cf0 299 SUPERFAMILY SSF103481 183 283 2.75E-13 T 13-10-2018 BMD_3932 a190d9e0792d5c94cfaf92d9a3a74cf0 299 SUPERFAMILY SSF103481 37 136 4.05E-13 T 13-10-2018 BMD_3932 a190d9e0792d5c94cfaf92d9a3a74cf0 299 Pfam PF00892 EamA-like transporter family 149 280 1.7E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_3932 a190d9e0792d5c94cfaf92d9a3a74cf0 299 Pfam PF00892 EamA-like transporter family 9 136 2.1E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_0537 30be2151d3bb75619c780e343e313698 203 Pfam PF02632 BioY family 38 184 1.0E-31 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 BMD_0537 30be2151d3bb75619c780e343e313698 203 Gene3D G3DSA:1.10.1760.20 1 194 6.1E-45 T 13-10-2018 BMD_0537 30be2151d3bb75619c780e343e313698 203 PIRSF PIRSF016661 1 194 9.7E-45 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 BMD_2649 7dd436980de33571129f832bdddc08d5 528 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 189 338 8.7E-7 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like BMD_3381 73e6d53f44d2a405f8537553b4b0b3b2 387 Pfam PF00535 Glycosyl transferase family 2 1 127 7.8E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_3381 73e6d53f44d2a405f8537553b4b0b3b2 387 Pfam PF02709 N-terminal domain of galactosyltransferase 199 256 9.3E-8 T 13-10-2018 IPR027791 Galactosyltransferase, C-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 BMD_3381 73e6d53f44d2a405f8537553b4b0b3b2 387 Gene3D G3DSA:3.90.550.10 1 279 5.2E-49 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3381 73e6d53f44d2a405f8537553b4b0b3b2 387 SUPERFAMILY SSF53448 1 286 8.84E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3747 ea8b94800680d22dc36772874331b6df 156 SUPERFAMILY SSF109854 9 156 2.93E-31 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_3747 ea8b94800680d22dc36772874331b6df 156 Gene3D G3DSA:1.20.120.450 2 147 1.1E-26 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_3747 ea8b94800680d22dc36772874331b6df 156 Pfam PF12867 DinB superfamily 12 140 2.7E-13 T 13-10-2018 IPR024775 DinB-like domain BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 Gene3D G3DSA:3.40.50.10710 209 359 4.8E-191 T 13-10-2018 BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 366 394 - T 13-10-2018 IPR001587 Ribonuclease J, conserved site BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 PIRSF PIRSF004803 2 557 6.5E-246 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 Gene3D G3DSA:3.60.15.10 14 444 4.8E-191 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 Hamap MF_01491 Ribonuclease J [rnj]. 6 557 47.726 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 SMART SM00849 23 217 2.6E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 SUPERFAMILY SSF56281 13 425 2.16E-95 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 12 555 7.1E-229 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 363 409 5.4E-9 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 Pfam PF00753 Metallo-beta-lactamase superfamily 21 169 4.5E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_1320 45b337d7aba064c49346abb24c1fee5c 557 Gene3D G3DSA:3.10.20.580 451 557 2.1E-39 T 13-10-2018 BMD_3064 298f6d639886e1a43c525f9cf1b53b02 91 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 48 1.1E-8 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_3064 298f6d639886e1a43c525f9cf1b53b02 91 SMART SM00966 8 51 2.9E-9 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_3064 298f6d639886e1a43c525f9cf1b53b02 91 Gene3D G3DSA:2.10.260.10 1 54 2.7E-25 T 13-10-2018 BMD_3064 298f6d639886e1a43c525f9cf1b53b02 91 SUPERFAMILY SSF89447 1 51 4.71E-16 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily BMD_3064 298f6d639886e1a43c525f9cf1b53b02 91 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 50 3.2E-10 T 13-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BMD_2786 2529b56f6ad793985f902f1cac535ea9 375 PIRSF PIRSF006060 10 367 8.6E-13 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2786 2529b56f6ad793985f902f1cac535ea9 375 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 16 370 2.3E-85 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_2786 2529b56f6ad793985f902f1cac535ea9 375 Pfam PF03845 Spore germination protein 16 338 8.9E-108 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_2786 2529b56f6ad793985f902f1cac535ea9 375 Gene3D G3DSA:1.20.1740.10 12 375 8.0E-22 T 13-10-2018 BMD_1685 37fa81280a1fc6f8bad1bdfb941a9184 476 SUPERFAMILY SSF50952 75 263 1.7E-10 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 BMD_1685 37fa81280a1fc6f8bad1bdfb941a9184 476 Gene3D G3DSA:2.120.10.30 3 370 4.7E-24 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BMD_1685 37fa81280a1fc6f8bad1bdfb941a9184 476 Pfam PF07995 Glucose / Sorbosone dehydrogenase 76 278 1.7E-8 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase BMD_1982 f9e8f5bf0ec90b91fc8c465e192fbe55 214 Pfam PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein 11 195 8.9E-40 T 13-10-2018 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein BMD_2764 214e10fade61510d41cfef082f84cf18 264 Gene3D G3DSA:1.20.1260.120 1 264 1.3E-113 T 13-10-2018 BMD_2764 214e10fade61510d41cfef082f84cf18 264 Pfam PF11155 Domain of unknown function (DUF2935) 8 122 1.1E-32 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 BMD_2764 214e10fade61510d41cfef082f84cf18 264 Pfam PF11155 Domain of unknown function (DUF2935) 137 253 2.2E-30 T 13-10-2018 IPR021328 Protein of unknown function DUF2935 BMD_2764 214e10fade61510d41cfef082f84cf18 264 SUPERFAMILY SSF158430 4 128 2.49E-38 T 13-10-2018 BMD_2764 214e10fade61510d41cfef082f84cf18 264 SUPERFAMILY SSF158430 134 258 1.23E-38 T 13-10-2018 BMD_1061 586ae788874c94d106efaa1b3212a17d 307 SMART SM00448 1 114 4.6E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1061 586ae788874c94d106efaa1b3212a17d 307 Pfam PF08664 YcbB domain 161 299 1.3E-47 T 13-10-2018 IPR013972 YcbB domain BMD_1061 586ae788874c94d106efaa1b3212a17d 307 SUPERFAMILY SSF52172 2 136 6.83E-24 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1061 586ae788874c94d106efaa1b3212a17d 307 Pfam PF00072 Response regulator receiver domain 4 112 1.4E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1061 586ae788874c94d106efaa1b3212a17d 307 Gene3D G3DSA:3.40.50.2300 2 146 8.8E-23 T 13-10-2018 BMD_3639 028c63707f6706dca6732be14f7a9a9a 103 SUPERFAMILY SSF69118 5 101 3.4E-27 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_3639 028c63707f6706dca6732be14f7a9a9a 103 Pfam PF02627 Carboxymuconolactone decarboxylase family 18 101 1.6E-20 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BMD_3639 028c63707f6706dca6732be14f7a9a9a 103 Gene3D G3DSA:1.20.1290.10 2 103 6.6E-28 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 SUPERFAMILY SSF50249 1 64 4.29E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 PRINTS PR00050 Cold shock protein signature 24 33 6.7E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 PRINTS PR00050 Cold shock protein signature 39 57 6.7E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 PRINTS PR00050 Cold shock protein signature 4 19 6.7E-19 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 SMART SM00357 3 66 2.1E-32 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 Gene3D G3DSA:2.40.50.140 1 66 4.4E-31 T 13-10-2018 BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.5E-31 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2695 a4f1618bcc2c48241b65ca00ce5f2cb1 66 PIRSF PIRSF002599 1 66 2.8E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_1884 2ab83afb6c8fbdd424664458fb89e7e1 363 Pfam PF01594 AI-2E family transporter 18 349 1.0E-82 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like BMD_3807 16153a81ac1308646ece216820b5e7d9 66 SMART SM00357 3 66 1.3E-30 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_3807 16153a81ac1308646ece216820b5e7d9 66 Gene3D G3DSA:2.40.50.140 1 65 3.4E-30 T 13-10-2018 BMD_3807 16153a81ac1308646ece216820b5e7d9 66 PIRSF PIRSF002599 1 66 2.4E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_3807 16153a81ac1308646ece216820b5e7d9 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 4.0E-30 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3807 16153a81ac1308646ece216820b5e7d9 66 PRINTS PR00050 Cold shock protein signature 4 19 7.7E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3807 16153a81ac1308646ece216820b5e7d9 66 PRINTS PR00050 Cold shock protein signature 24 33 7.7E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3807 16153a81ac1308646ece216820b5e7d9 66 PRINTS PR00050 Cold shock protein signature 39 57 7.7E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_3807 16153a81ac1308646ece216820b5e7d9 66 SUPERFAMILY SSF50249 1 64 3.11E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_3807 16153a81ac1308646ece216820b5e7d9 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 13-10-2018 IPR019844 Cold-shock conserved site BMD_4858 d64bc7911c105ac43963af2a22342769 157 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 157 33.097 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 3.0E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 3.0E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 78 96 3.0E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 119 138 3.0E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 3.0E-40 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 Gene3D G3DSA:3.30.1360.80 1 157 6.1E-62 T 13-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 PIRSF PIRSF006160 1 157 3.5E-61 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 152 7.1E-51 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 8 148 2.0E-73 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BMD_4858 d64bc7911c105ac43963af2a22342769 157 SUPERFAMILY SSF63411 4 152 2.01E-59 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BMD_4216 7cd424630211824819ac837a57f28f80 555 Gene3D G3DSA:1.25.40.340 4 197 3.8E-10 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BMD_4216 7cd424630211824819ac837a57f28f80 555 Pfam PF13684 Dihydroxyacetone kinase family 240 555 2.4E-126 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain BMD_4216 7cd424630211824819ac837a57f28f80 555 SUPERFAMILY SSF101473 2 200 2.35E-46 T 13-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BMD_4216 7cd424630211824819ac837a57f28f80 555 SMART SM01120 36 201 2.9E-69 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BMD_4216 7cd424630211824819ac837a57f28f80 555 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 11 555 1.7E-215 T 13-10-2018 IPR019986 DAK2 domain-containing protein YloV BMD_4216 7cd424630211824819ac837a57f28f80 555 SMART SM01121 240 555 3.2E-192 T 13-10-2018 IPR033470 Uncharacterised protein, DhaK domain BMD_4216 7cd424630211824819ac837a57f28f80 555 Pfam PF02734 DAK2 domain 36 200 2.4E-41 T 13-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BMD_4593 3273450ce393d0db73fc3ac1c51c7aea 367 Pfam PF02618 YceG-like family 53 354 8.4E-82 T 13-10-2018 IPR003770 Endolytic murein transglycosylase BMD_4593 3273450ce393d0db73fc3ac1c51c7aea 367 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 17 361 2.0E-112 T 13-10-2018 IPR003770 Endolytic murein transglycosylase BMD_4593 3273450ce393d0db73fc3ac1c51c7aea 367 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 19 362 34.392 T 13-10-2018 IPR003770 Endolytic murein transglycosylase BMD_4593 3273450ce393d0db73fc3ac1c51c7aea 367 Gene3D G3DSA:1.10.8.1150 47 122 3.0E-25 T 13-10-2018 BMD_4288 70de67758d1239ab62d0e959e4c98b07 189 PIRSF PIRSF004553 1 184 2.4E-47 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 BMD_4288 70de67758d1239ab62d0e959e4c98b07 189 Gene3D G3DSA:3.40.50.150 1 183 3.1E-56 T 13-10-2018 BMD_4288 70de67758d1239ab62d0e959e4c98b07 189 Pfam PF03602 Conserved hypothetical protein 95 1 180 2.8E-54 T 13-10-2018 BMD_4288 70de67758d1239ab62d0e959e4c98b07 189 SUPERFAMILY SSF53335 1 180 8.87E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4288 70de67758d1239ab62d0e959e4c98b07 189 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 2 179 2.7E-52 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 BMD_2441 2a3778287e5424bc7af870d895c25915 311 Pfam PF00929 Exonuclease 8 177 3.9E-17 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_2441 2a3778287e5424bc7af870d895c25915 311 SUPERFAMILY SSF53098 6 183 3.11E-23 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_2441 2a3778287e5424bc7af870d895c25915 311 Gene3D G3DSA:3.30.420.10 1 186 1.6E-36 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_2441 2a3778287e5424bc7af870d895c25915 311 SMART SM00479 6 186 1.3E-11 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_3107 b48bff9841ffcd9594e6be4e19107e03 150 Pfam PF04657 Putative inner membrane exporter, YdcZ 4 139 1.1E-35 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ BMD_2019 fe3cbd232027c9edef446ac4c8a8b82d 174 Gene3D G3DSA:3.40.630.30 2 156 2.8E-22 T 13-10-2018 BMD_2019 fe3cbd232027c9edef446ac4c8a8b82d 174 SUPERFAMILY SSF55729 4 147 5.13E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2019 fe3cbd232027c9edef446ac4c8a8b82d 174 Pfam PF00583 Acetyltransferase (GNAT) family 40 136 6.0E-11 T 13-10-2018 IPR000182 GNAT domain BMD_1559 a659951328f7764bba780927e5c26f7f 243 Pfam PF02535 ZIP Zinc transporter 89 221 4.7E-9 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 BMD_4286 eb33f38d2ddac8fb368424948c9de8bc 403 TIGRFAM TIGR02871 spore_ylbJ: sporulation integral membrane protein YlbJ 10 386 6.0E-122 T 13-10-2018 IPR014226 Sporulation integral membrane protein YlbJ BMD_4286 eb33f38d2ddac8fb368424948c9de8bc 403 Pfam PF07670 Nucleoside recognition 42 140 3.1E-6 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_4538 6ab475576c628fdea47a39c21908e11b 681 SMART SM00471 464 620 5.3E-12 T 13-10-2018 IPR003607 HD/PDEase domain BMD_4538 6ab475576c628fdea47a39c21908e11b 681 Pfam PF07698 7TM receptor with intracellular HD hydrolase 247 443 7.3E-42 T 13-10-2018 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain BMD_4538 6ab475576c628fdea47a39c21908e11b 681 Gene3D G3DSA:1.10.3210.10 441 648 1.2E-26 T 13-10-2018 BMD_4538 6ab475576c628fdea47a39c21908e11b 681 Pfam PF01966 HD domain 468 610 6.6E-20 T 13-10-2018 IPR006674 HD domain BMD_4538 6ab475576c628fdea47a39c21908e11b 681 SUPERFAMILY SSF109604 467 616 5.42E-17 T 13-10-2018 BMD_4538 6ab475576c628fdea47a39c21908e11b 681 TIGRFAM TIGR00277 HDIG: HDIG domain 465 563 5.4E-29 T 13-10-2018 IPR006675 HDIG domain BMD_4538 6ab475576c628fdea47a39c21908e11b 681 Pfam PF07697 7TM-HD extracellular 20 240 3.4E-35 T 13-10-2018 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain BMD_3636 11dc2e0d367d4e802ddeb9f77020ff39 189 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 17 168 4.2E-19 T 13-10-2018 IPR025847 MEDS domain BMD_3736 05a68d34e708cdd71499b777f9c85034 187 Pfam PF08006 Protein of unknown function (DUF1700) 1 181 4.8E-56 T 13-10-2018 IPR012963 Protein of unknown function DUF1700 BMD_0599 4f45fa27864c6555e43430169f52816b 168 SUPERFAMILY SSF54909 67 166 3.22E-21 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_0599 4f45fa27864c6555e43430169f52816b 168 Pfam PF03992 Antibiotic biosynthesis monooxygenase 67 140 4.6E-11 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BMD_0599 4f45fa27864c6555e43430169f52816b 168 Gene3D G3DSA:3.30.70.3430 1 168 2.9E-64 T 13-10-2018 BMD_4560 311077f2149d425676e332c5cb8183db 44 Pfam PF14141 YqzM-like protein 2 43 1.6E-24 T 13-10-2018 IPR025416 YqzM-like protein BMD_2476 0fcb685eec164ab663f360d80281c24e 277 SUPERFAMILY SSF52091 161 269 1.96E-18 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2476 0fcb685eec164ab663f360d80281c24e 277 Gene3D G3DSA:3.30.750.24 156 274 1.5E-35 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2476 0fcb685eec164ab663f360d80281c24e 277 Pfam PF01740 STAS domain 163 265 7.4E-14 T 13-10-2018 IPR002645 STAS domain BMD_2707 681ed690b97a9a49a172aac301d26175 214 Gene3D G3DSA:2.20.25.10 177 214 2.2E-23 T 13-10-2018 BMD_2707 681ed690b97a9a49a172aac301d26175 214 SMART SM00850 116 213 5.0E-28 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_2707 681ed690b97a9a49a172aac301d26175 214 Gene3D G3DSA:2.40.50.40 106 176 9.3E-29 T 13-10-2018 BMD_2707 681ed690b97a9a49a172aac301d26175 214 Pfam PF04397 LytTr DNA-binding domain 118 212 6.8E-28 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 SUPERFAMILY SSF54001 268 390 1.86E-43 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Pfam PF00877 NlpC/P60 family 286 388 6.6E-32 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Pfam PF01471 Putative peptidoglycan binding domain 115 170 2.6E-19 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Pfam PF01471 Putative peptidoglycan binding domain 196 251 1.0E-17 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Pfam PF01471 Putative peptidoglycan binding domain 36 92 8.2E-18 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Gene3D G3DSA:1.10.101.10 182 256 1.6E-22 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Gene3D G3DSA:1.10.101.10 100 174 5.6E-24 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Gene3D G3DSA:1.10.101.10 27 94 3.8E-20 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 SUPERFAMILY SSF47090 105 170 1.45E-20 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 Gene3D G3DSA:3.90.1720.10 267 391 6.8E-44 T 13-10-2018 BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 SUPERFAMILY SSF47090 187 254 1.49E-20 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_3039 c189c09d70344dc4b6dfa56a955213d5 391 SUPERFAMILY SSF47090 27 92 5.3E-20 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_3106 38a049c40874dcd8420e13314fe289b6 142 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 140 3.5E-32 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ BMD_0642 010b2376b4bdb1d61f3b2cd90df4c688 1166 TIGRFAM TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit 2 1164 0.0 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 BMD_0642 010b2376b4bdb1d61f3b2cd90df4c688 1166 Gene3D G3DSA:3.40.50.300 277 435 2.8E-34 T 13-10-2018 BMD_0642 010b2376b4bdb1d61f3b2cd90df4c688 1166 Gene3D G3DSA:3.40.50.300 531 699 6.1E-46 T 13-10-2018 BMD_0642 010b2376b4bdb1d61f3b2cd90df4c688 1166 SUPERFAMILY SSF52540 304 750 4.34E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0642 010b2376b4bdb1d61f3b2cd90df4c688 1166 Gene3D G3DSA:3.40.50.300 1 153 5.3E-33 T 13-10-2018 BMD_0642 010b2376b4bdb1d61f3b2cd90df4c688 1166 Hamap MF_01452 ATP-dependent helicase/deoxyribonuclease subunit B [addB]. 1 1164 62.333 T 13-10-2018 IPR014140 DNA helicase subunit AddB GO:0000724|GO:0016788 BMD_0642 010b2376b4bdb1d61f3b2cd90df4c688 1166 Pfam PF12705 PD-(D/E)XK nuclease superfamily 790 1133 3.6E-61 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type BMD_0695 8f175ab62207804de21e86013a956ad3 64 Pfam PF10815 ComZ 3 57 1.4E-31 T 13-10-2018 IPR024558 ComZ BMD_0695 8f175ab62207804de21e86013a956ad3 64 ProDom PD027277 REPRESSOR COMZ COMG OPERON TRANSCRIPTION POSSIBLE COMPETENCE PROTEIN-RELATED BH2888 REGULATION 1 56 4.0E-16 T 13-10-2018 IPR024558 ComZ BMD_4927 5e2b7f42d73da48c7b97cdf9c2d08271 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 133 152 1.3E-14 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_4927 5e2b7f42d73da48c7b97cdf9c2d08271 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 235 259 1.3E-14 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_4927 5e2b7f42d73da48c7b97cdf9c2d08271 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 375 401 1.3E-14 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_4927 5e2b7f42d73da48c7b97cdf9c2d08271 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 163 187 1.3E-14 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_4927 5e2b7f42d73da48c7b97cdf9c2d08271 494 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 323 342 1.3E-14 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_4927 5e2b7f42d73da48c7b97cdf9c2d08271 494 Pfam PF00361 Proton-conducting membrane transporter 129 417 4.1E-51 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BMD_1803 5200c538025973a4dc10aa8844457e9a 333 Gene3D G3DSA:1.20.1260.10 169 317 4.0E-10 T 13-10-2018 IPR012347 Ferritin-like BMD_1803 5200c538025973a4dc10aa8844457e9a 333 Gene3D G3DSA:1.20.1260.10 3 146 2.3E-11 T 13-10-2018 IPR012347 Ferritin-like BMD_1803 5200c538025973a4dc10aa8844457e9a 333 Pfam PF11553 Protein of unknown function (DUF3231) 3 160 1.5E-45 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_1803 5200c538025973a4dc10aa8844457e9a 333 Pfam PF11553 Protein of unknown function (DUF3231) 172 329 3.9E-39 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_3905 85aff265f4c248c81af0b8651eea225f 313 Pfam PF13536 Putative multidrug resistance efflux transporter 38 296 4.8E-106 T 13-10-2018 IPR032713 Putative multidrug resistance efflux transporter BMD_0846 3ce0a6a1bb9f7cc1c2755b512d787ee1 60 Pfam PF08863 YolD-like protein 1 59 1.2E-9 T 13-10-2018 IPR014962 YolD-like protein BMD_1707 042f589c1af35b2d46f62ead64226083 438 TIGRFAM TIGR00797 matE: MATE efflux family protein 12 406 1.5E-71 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1707 042f589c1af35b2d46f62ead64226083 438 Pfam PF01554 MatE 255 392 4.2E-13 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_1707 042f589c1af35b2d46f62ead64226083 438 Pfam PF01554 MatE 12 172 3.1E-21 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BMD_2901 0a732b77af341ba3797887b43ddaef74 63 Pfam PF13396 Phospholipase_D-nuclease N-terminal 19 60 2.5E-11 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal BMD_0547 b62a3d6e581535cd077ba0ccf0168536 273 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 73 86 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site BMD_0547 b62a3d6e581535cd077ba0ccf0168536 273 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 268 3.7E-68 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_0547 b62a3d6e581535cd077ba0ccf0168536 273 Gene3D G3DSA:3.40.190.10 133 230 3.4E-76 T 13-10-2018 BMD_0547 b62a3d6e581535cd077ba0ccf0168536 273 SMART SM00062 50 269 5.9E-87 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_0547 b62a3d6e581535cd077ba0ccf0168536 273 SMART SM00079 50 268 7.7E-4 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 BMD_0547 b62a3d6e581535cd077ba0ccf0168536 273 Gene3D G3DSA:3.40.190.10 49 261 3.4E-76 T 13-10-2018 BMD_0547 b62a3d6e581535cd077ba0ccf0168536 273 SUPERFAMILY SSF53850 1 269 8.99E-74 T 13-10-2018 BMD_4408 5806febfb83231657c0254e90e75951e 472 Pfam PF01979 Amidohydrolase family 49 437 3.1E-27 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_4408 5806febfb83231657c0254e90e75951e 472 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 4 455 5.1E-199 T 13-10-2018 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: R-HSA-399956 BMD_4408 5806febfb83231657c0254e90e75951e 472 Gene3D G3DSA:3.20.20.140 53 381 7.9E-189 T 13-10-2018 BMD_4408 5806febfb83231657c0254e90e75951e 472 Gene3D G3DSA:2.30.40.10 4 452 7.9E-189 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_4408 5806febfb83231657c0254e90e75951e 472 SUPERFAMILY SSF51338 2 64 1.8E-15 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_4408 5806febfb83231657c0254e90e75951e 472 SUPERFAMILY SSF51556 53 383 1.93E-110 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_4408 5806febfb83231657c0254e90e75951e 472 SUPERFAMILY SSF51338 346 459 2.64E-39 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1697 51c01006c3e760ba8afc4a414f2e4c7c 141 SUPERFAMILY SSF54631 1 116 5.43E-28 T 13-10-2018 BMD_1697 51c01006c3e760ba8afc4a414f2e4c7c 141 Gene3D G3DSA:3.10.580.10 1 121 7.5E-31 T 13-10-2018 BMD_1697 51c01006c3e760ba8afc4a414f2e4c7c 141 Pfam PF00571 CBS domain 4 53 4.2E-7 T 13-10-2018 IPR000644 CBS domain BMD_1697 51c01006c3e760ba8afc4a414f2e4c7c 141 Pfam PF00571 CBS domain 68 117 2.5E-10 T 13-10-2018 IPR000644 CBS domain BMD_1697 51c01006c3e760ba8afc4a414f2e4c7c 141 SMART SM00116 74 121 2.4E-11 T 13-10-2018 IPR000644 CBS domain BMD_1697 51c01006c3e760ba8afc4a414f2e4c7c 141 SMART SM00116 10 57 0.56 T 13-10-2018 IPR000644 CBS domain BMD_3255 caebb7debf2b87f3a0b694edae5916b7 209 Pfam PF01810 LysE type translocator 13 207 5.7E-32 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_3255 caebb7debf2b87f3a0b694edae5916b7 209 PIRSF PIRSF006324 1 209 5.5E-61 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_0542 0792a013a1468c50b69d5ec3b2e0b951 143 SUPERFAMILY SSF46785 2 136 1.25E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0542 0792a013a1468c50b69d5ec3b2e0b951 143 Gene3D G3DSA:1.10.10.10 1 143 1.9E-56 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0542 0792a013a1468c50b69d5ec3b2e0b951 143 Pfam PF02082 Transcriptional regulator 1 81 6.0E-23 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type BMD_5079 b86ca58a2499bb09ef6aa658d98c0fef 104 PIRSF PIRSF000025 1 104 1.8E-30 T 13-10-2018 IPR012218 Cytochrome c, Bacillus subtilis c550-related GO:0005506|GO:0009055|GO:0016021|GO:0020037 BMD_5079 b86ca58a2499bb09ef6aa658d98c0fef 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 34 100 3.1E-13 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_5079 b86ca58a2499bb09ef6aa658d98c0fef 104 Gene3D G3DSA:1.10.760.10 34 104 2.0E-28 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BMD_5079 b86ca58a2499bb09ef6aa658d98c0fef 104 SUPERFAMILY SSF46626 4 102 2.29E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BMD_4200 f690f47474656a719966e5912854604b 76 SUPERFAMILY SSF54814 15 61 1.31E-8 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BMD_4200 f690f47474656a719966e5912854604b 76 Gene3D G3DSA:3.30.300.20 1 75 1.1E-7 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_4200 f690f47474656a719966e5912854604b 76 Hamap MF_00088 UPF0109 protein . 1 75 21.699 T 13-10-2018 IPR020627 Uncharacterised protein family UPF0109 BMD_4200 f690f47474656a719966e5912854604b 76 Pfam PF13083 KH domain 3 74 1.9E-26 T 13-10-2018 BMD_0977 74da85f71245a12fe0a47137f7bb7d20 402 SUPERFAMILY SSF89796 6 402 6.15E-124 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily BMD_0977 74da85f71245a12fe0a47137f7bb7d20 402 Pfam PF02515 CoA-transferase family III 9 378 1.1E-115 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 BMD_0977 74da85f71245a12fe0a47137f7bb7d20 402 Gene3D G3DSA:3.30.1540.10 232 330 8.4E-125 T 13-10-2018 BMD_0977 74da85f71245a12fe0a47137f7bb7d20 402 Gene3D G3DSA:3.40.50.10540 8 394 8.4E-125 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily BMD_2817 06d518c8ac169cf09fe7991fa2f29f74 316 SUPERFAMILY SSF88659 13 48 1.7E-6 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_2817 06d518c8ac169cf09fe7991fa2f29f74 316 Pfam PF13384 Homeodomain-like domain 13 51 1.9E-7 T 13-10-2018 BMD_2817 06d518c8ac169cf09fe7991fa2f29f74 316 Gene3D G3DSA:3.40.50.1360 57 316 2.4E-82 T 13-10-2018 BMD_2817 06d518c8ac169cf09fe7991fa2f29f74 316 Pfam PF04198 Putative sugar-binding domain 62 312 2.6E-69 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 BMD_2817 06d518c8ac169cf09fe7991fa2f29f74 316 Gene3D G3DSA:1.10.10.60 2 54 2.1E-21 T 13-10-2018 BMD_2817 06d518c8ac169cf09fe7991fa2f29f74 316 SUPERFAMILY SSF100950 62 314 3.3E-73 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_2965 220b3f50c9254f408fd222c4ce1ff825 187 Pfam PF02698 DUF218 domain 37 177 1.3E-30 T 13-10-2018 IPR003848 Domain of unknown function DUF218 BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 3.0E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.0E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.0E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.0E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 3.0E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.0E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 7.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 250 1.1E-62 T 13-10-2018 BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 Gene3D G3DSA:3.40.50.720 1 251 1.2E-81 T 13-10-2018 BMD_2852 92b43cd3301f5c22a31023e1f50f7ba2 253 SUPERFAMILY SSF51735 6 251 2.93E-80 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_4688 8b9162357bd47ade81934c741206d835 170 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 2 148 9.8E-31 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 BMD_4688 8b9162357bd47ade81934c741206d835 170 SUPERFAMILY SSF56300 2 163 2.95E-39 T 13-10-2018 BMD_4688 8b9162357bd47ade81934c741206d835 170 Gene3D G3DSA:3.60.21.10 1 167 5.8E-42 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like BMD_4688 8b9162357bd47ade81934c741206d835 170 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 2 142 8.7E-28 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 BMD_4323 556d28d884b2d856325e09e336398449 67 Pfam PF10966 Protein of unknown function (DUF2768) 7 64 2.5E-25 T 13-10-2018 IPR020076 Protein of unknown function DUF2768 BMD_4323 556d28d884b2d856325e09e336398449 67 ProDom PD054986 YPHE TRANSMEMBRANE MEMBRANE PRECURSOR BH1643 SIGNAL 1 67 9.0E-14 T 13-10-2018 IPR020076 Protein of unknown function DUF2768 BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 Pfam PF00905 Penicillin binding protein transpeptidase domain 363 692 1.8E-69 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 Pfam PF03717 Penicillin-binding Protein dimerisation domain 58 316 2.0E-35 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 SUPERFAMILY SSF56519 55 330 1.18E-31 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 Gene3D G3DSA:3.40.710.10 330 676 6.7E-221 T 13-10-2018 BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 Gene3D G3DSA:2.20.70.40 299 321 6.7E-221 T 13-10-2018 BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 Gene3D G3DSA:1.10.10.1230 86 205 6.7E-221 T 13-10-2018 BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 SUPERFAMILY SSF56601 331 696 1.03E-64 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_4500 4cbd5e9e87db158641640ef4a92abcbd 725 Gene3D G3DSA:3.90.1310.30 61 587 6.7E-221 T 13-10-2018 BMD_0817 32ca4cde6de87271523fa0ed1cce1383 435 Gene3D G3DSA:3.90.1150.10 294 435 8.4E-53 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_0817 32ca4cde6de87271523fa0ed1cce1383 435 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 9 425 1.3E-207 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 BMD_0817 32ca4cde6de87271523fa0ed1cce1383 435 SUPERFAMILY SSF53383 8 426 7.98E-126 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_0817 32ca4cde6de87271523fa0ed1cce1383 435 Gene3D G3DSA:3.40.640.10 8 290 2.0E-102 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_0817 32ca4cde6de87271523fa0ed1cce1383 435 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_0817 32ca4cde6de87271523fa0ed1cce1383 435 PIRSF PIRSF001434 1 429 4.5E-130 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_0817 32ca4cde6de87271523fa0ed1cce1383 435 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 10 426 1.6E-147 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BMD_0383 ca0364f7ba955bae1159d0ec964dc88e 351 Pfam PF01699 Sodium/calcium exchanger protein 28 179 2.4E-18 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 BMD_0383 ca0364f7ba955bae1159d0ec964dc88e 351 Pfam PF01699 Sodium/calcium exchanger protein 207 343 2.8E-19 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 BMD_0383 ca0364f7ba955bae1159d0ec964dc88e 351 TIGRFAM TIGR00378 cax: calcium/proton exchanger 12 349 4.7E-147 T 13-10-2018 IPR004798 Calcium/proton exchanger CAX GO:0006816|GO:0015369 BMD_0383 ca0364f7ba955bae1159d0ec964dc88e 351 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 3 348 1.1E-120 T 13-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 BMD_0383 ca0364f7ba955bae1159d0ec964dc88e 351 Gene3D G3DSA:1.20.1420.30 58 342 2.6E-23 T 13-10-2018 BMD_0383 ca0364f7ba955bae1159d0ec964dc88e 351 Gene3D G3DSA:1.20.58.1130 35 238 2.6E-23 T 13-10-2018 BMD_0315 1cd76ecd4034dcb5c0c500288b18f776 451 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_0315 1cd76ecd4034dcb5c0c500288b18f776 451 PIRSF PIRSF006060 1 451 1.6E-73 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0315 1cd76ecd4034dcb5c0c500288b18f776 451 Pfam PF00324 Amino acid permease 16 436 1.7E-92 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_0315 1cd76ecd4034dcb5c0c500288b18f776 451 Gene3D G3DSA:1.20.1740.10 9 451 4.3E-60 T 13-10-2018 BMD_2487 65fe47f3d9f27384df00d92ded1ca476 405 Pfam PF07690 Major Facilitator Superfamily 15 340 4.2E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2487 65fe47f3d9f27384df00d92ded1ca476 405 SUPERFAMILY SSF103473 7 396 3.79E-38 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2487 65fe47f3d9f27384df00d92ded1ca476 405 Gene3D G3DSA:1.20.1250.20 4 390 2.1E-26 T 13-10-2018 BMD_4414 46e2377c5e4f59ec6bcfae1f4298f890 153 SUPERFAMILY SSF141523 3 128 6.8E-30 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_4414 46e2377c5e4f59ec6bcfae1f4298f890 153 Pfam PF03734 L,D-transpeptidase catalytic domain 5 128 3.6E-20 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BMD_4414 46e2377c5e4f59ec6bcfae1f4298f890 153 Gene3D G3DSA:2.40.440.10 1 152 5.9E-40 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_1969 3423bc4477ee6eb38a76ea3c8b453828 132 Pfam PF04134 Protein of unknown function, DUF393 5 114 2.7E-34 T 13-10-2018 IPR007263 Protein of unknown function DUF393 BMD_1708 8d8b4e25d43ff4ad33e2443eceb21b48 231 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 128 228 1.3E-7 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_1708 8d8b4e25d43ff4ad33e2443eceb21b48 231 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 7 107 8.6E-20 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_0381 f128b566fc3bd325bade98facfa51e0b 127 Gene3D G3DSA:3.30.300.20 1 127 7.0E-26 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta BMD_0381 f128b566fc3bd325bade98facfa51e0b 127 SUPERFAMILY SSF82784 24 126 7.07E-23 T 13-10-2018 IPR036102 OsmC/Ohr superfamily BMD_0381 f128b566fc3bd325bade98facfa51e0b 127 Pfam PF02566 OsmC-like protein 26 121 1.4E-17 T 13-10-2018 IPR003718 OsmC/Ohr family BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 199 38.826 T 13-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 9.5E-48 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 9.5E-48 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 9.5E-48 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 9.5E-48 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 160 172 9.5E-48 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 SUPERFAMILY SSF53182 1 210 9.16E-71 T 13-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 4 210 4.4E-80 T 13-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 13-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 PIRSF PIRSF015592 1 211 3.6E-80 T 13-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 Gene3D G3DSA:3.40.630.20 1 213 5.0E-79 T 13-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 Pfam PF01470 Pyroglutamyl peptidase 3 197 4.2E-78 T 13-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 BMD_1099 fe5d919c7e418ac766a131cbc5fc6015 213 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 13-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 BMD_4464 5bdcdce88d2f59db8a0257dd7c8f427f 293 Gene3D G3DSA:3.40.1090.10 104 251 3.3E-20 T 13-10-2018 BMD_4464 5bdcdce88d2f59db8a0257dd7c8f427f 293 Gene3D G3DSA:3.40.1090.20 2 86 1.3E-21 T 13-10-2018 BMD_4464 5bdcdce88d2f59db8a0257dd7c8f427f 293 SUPERFAMILY SSF52151 6 288 2.46E-44 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BMD_4464 5bdcdce88d2f59db8a0257dd7c8f427f 293 Pfam PF01734 Patatin-like phospholipase 6 194 1.4E-34 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BMD_2369 66a689069a216f9ec00a43f672085e57 428 SUPERFAMILY SSF53850 20 421 9.93E-87 T 13-10-2018 BMD_2369 66a689069a216f9ec00a43f672085e57 428 Gene3D G3DSA:3.40.190.10 152 410 1.1E-98 T 13-10-2018 BMD_2369 66a689069a216f9ec00a43f672085e57 428 Gene3D G3DSA:3.40.190.10 64 380 1.1E-98 T 13-10-2018 BMD_2369 66a689069a216f9ec00a43f672085e57 428 Pfam PF01547 Bacterial extracellular solute-binding protein 46 337 3.9E-45 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_2660 e1d3fdd9aa676fddb6f029ae148b7b69 256 SUPERFAMILY SSF56317 2 255 3.66E-72 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_2660 e1d3fdd9aa676fddb6f029ae148b7b69 256 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 139 159 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site BMD_2660 e1d3fdd9aa676fddb6f029ae148b7b69 256 Pfam PF00795 Carbon-nitrogen hydrolase 3 240 4.3E-53 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BMD_2660 e1d3fdd9aa676fddb6f029ae148b7b69 256 Gene3D G3DSA:3.60.110.10 1 256 1.7E-78 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_1598 853cb2846a2b7facc30804382a9e01d7 429 SUPERFAMILY SSF51556 77 376 9.87E-83 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_1598 853cb2846a2b7facc30804382a9e01d7 429 Gene3D G3DSA:3.20.20.140 78 375 2.2E-176 T 13-10-2018 BMD_1598 853cb2846a2b7facc30804382a9e01d7 429 SUPERFAMILY SSF51338 31 418 2.16E-22 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1598 853cb2846a2b7facc30804382a9e01d7 429 Gene3D G3DSA:2.30.40.10 9 413 2.2E-176 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_1598 853cb2846a2b7facc30804382a9e01d7 429 TIGRFAM TIGR01224 hutI: imidazolonepropionase 34 414 2.5E-157 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1598 853cb2846a2b7facc30804382a9e01d7 429 Hamap MF_00372 Imidazolonepropionase [hutI]. 3 415 43.753 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BMD_1598 853cb2846a2b7facc30804382a9e01d7 429 Pfam PF01979 Amidohydrolase family 74 415 2.5E-21 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_5116 185be263148a6d852a9919957743e44f 427 SMART SM00984 310 406 9.9E-35 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_5116 185be263148a6d852a9919957743e44f 427 SUPERFAMILY SSF51735 3 192 1.14E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5116 185be263148a6d852a9919957743e44f 427 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 4 402 7.0E-135 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BMD_5116 185be263148a6d852a9919957743e44f 427 PIRSF PIRSF000124 3 421 1.2E-81 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BMD_5116 185be263148a6d852a9919957743e44f 427 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 310 405 1.2E-28 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_5116 185be263148a6d852a9919957743e44f 427 SUPERFAMILY SSF52413 304 415 7.59E-30 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 BMD_5116 185be263148a6d852a9919957743e44f 427 Gene3D G3DSA:3.40.50.720 197 426 2.9E-71 T 13-10-2018 BMD_5116 185be263148a6d852a9919957743e44f 427 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 199 285 2.2E-24 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_5116 185be263148a6d852a9919957743e44f 427 Gene3D G3DSA:3.40.50.720 1 196 6.6E-67 T 13-10-2018 BMD_5116 185be263148a6d852a9919957743e44f 427 PIRSF PIRSF500136 1 421 6.0E-153 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 BMD_5116 185be263148a6d852a9919957743e44f 427 SUPERFAMILY SSF48179 198 290 1.87E-26 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BMD_5116 185be263148a6d852a9919957743e44f 427 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 178 4.9E-52 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BMD_3755 9ad96e615767ec880ecfea23214864e9 69 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 10 64 3.3E-22 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_3755 9ad96e615767ec880ecfea23214864e9 69 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 25 34 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_3755 9ad96e615767ec880ecfea23214864e9 69 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 43 57 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_3755 9ad96e615767ec880ecfea23214864e9 69 Gene3D G3DSA:1.10.8.910 10 68 5.9E-31 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_1417 fddc5bb0de3dfa7ede655cb65d7bd45a 242 PIRSF PIRSF031509 4 242 3.8E-63 T 13-10-2018 IPR016975 Cell wall-active antibiotic response protein GO:0016021 BMD_1417 fddc5bb0de3dfa7ede655cb65d7bd45a 242 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 127 239 2.1E-36 T 13-10-2018 IPR024425 Cell wall-active antibiotics response 4TMS YvqF BMD_0377 c2df3779b395df42a998f1d73cde4cc0 105 SUPERFAMILY SSF46785 9 100 9.09E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0377 c2df3779b395df42a998f1d73cde4cc0 105 SMART SM00418 19 97 1.2E-25 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_0377 c2df3779b395df42a998f1d73cde4cc0 105 Gene3D G3DSA:1.10.10.10 1 105 4.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0377 c2df3779b395df42a998f1d73cde4cc0 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 1.5E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_0377 c2df3779b395df42a998f1d73cde4cc0 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 1.5E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_0377 c2df3779b395df42a998f1d73cde4cc0 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 1.5E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_0377 c2df3779b395df42a998f1d73cde4cc0 105 Pfam PF01022 Bacterial regulatory protein, arsR family 26 72 4.8E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3236 9816d066196c3fc9a846db4c84bf54d2 227 Pfam PF03741 Integral membrane protein TerC family 13 183 3.2E-45 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BMD_3236 9816d066196c3fc9a846db4c84bf54d2 227 TIGRFAM TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family 12 184 7.6E-65 T 13-10-2018 IPR022301 Integral membrane protein YjbE BMD_1948 4ba4def2b03c569b9f75ee5f558c3308 104 Pfam PF00085 Thioredoxin 5 100 3.0E-15 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 BMD_1948 4ba4def2b03c569b9f75ee5f558c3308 104 SUPERFAMILY SSF52833 4 102 6.8E-21 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_1948 4ba4def2b03c569b9f75ee5f558c3308 104 Gene3D G3DSA:3.40.30.10 1 103 1.8E-20 T 13-10-2018 BMD_1216 c00c9f715bb1e6711cbb4a792f7c1ef6 362 TIGRFAM TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit 9 360 3.5E-161 T 13-10-2018 IPR010125 Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit GO:0016746|GO:0042619 BMD_1216 c00c9f715bb1e6711cbb4a792f7c1ef6 362 SUPERFAMILY SSF53474 58 358 2.37E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1216 c00c9f715bb1e6711cbb4a792f7c1ef6 362 Gene3D G3DSA:3.40.50.1820 53 361 7.3E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1216 c00c9f715bb1e6711cbb4a792f7c1ef6 362 Pfam PF00561 alpha/beta hydrolase fold 72 342 1.5E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_2818 ec3bd7dd2a2801dd430371101a1d98cf 262 Gene3D G3DSA:3.30.40.60 124 235 9.3E-14 T 13-10-2018 BMD_2818 ec3bd7dd2a2801dd430371101a1d98cf 262 Pfam PF13395 HNH endonuclease 163 212 2.0E-15 T 13-10-2018 IPR003615 HNH nuclease BMD_2818 ec3bd7dd2a2801dd430371101a1d98cf 262 SMART SM00507 150 205 6.4E-6 T 13-10-2018 IPR003615 HNH nuclease BMD_3072 2041181094b9fdf4b4403f6f3e24389b 148 Gene3D G3DSA:3.40.630.30 3 141 3.3E-25 T 13-10-2018 BMD_3072 2041181094b9fdf4b4403f6f3e24389b 148 SUPERFAMILY SSF55729 1 136 3.31E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3072 2041181094b9fdf4b4403f6f3e24389b 148 Pfam PF00583 Acetyltransferase (GNAT) family 40 135 2.8E-11 T 13-10-2018 IPR000182 GNAT domain BMD_0323 6dd888b30aa08eba3557f4ee2914b89e 404 Pfam PF04235 Protein of unknown function (DUF418) 229 381 8.9E-40 T 13-10-2018 IPR007349 Domain of unknown function DUF418 BMD_2598 de95fa84538ac4be6d420c0b391ef7ce 374 SUPERFAMILY SSF159672 15 259 6.54E-58 T 13-10-2018 IPR038029 GbiG N-terminal domain superfamily KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 BMD_2598 de95fa84538ac4be6d420c0b391ef7ce 374 Gene3D G3DSA:3.30.420.180 242 372 2.9E-38 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 BMD_2598 de95fa84538ac4be6d420c0b391ef7ce 374 Pfam PF11761 Cobalamin biosynthesis central region 155 249 8.7E-14 T 13-10-2018 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 BMD_2598 de95fa84538ac4be6d420c0b391ef7ce 374 Gene3D G3DSA:3.40.50.11220 11 144 4.0E-33 T 13-10-2018 BMD_2598 de95fa84538ac4be6d420c0b391ef7ce 374 Pfam PF11760 Cobalamin synthesis G N-terminal 70 149 4.2E-35 T 13-10-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 BMD_2598 de95fa84538ac4be6d420c0b391ef7ce 374 SUPERFAMILY SSF159664 245 372 6.8E-37 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 BMD_2598 de95fa84538ac4be6d420c0b391ef7ce 374 Pfam PF01890 Cobalamin synthesis G C-terminus 252 369 6.5E-33 T 13-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 BMD_4766 1f2f88910c31d809998a473adc4039df 111 Pfam PF14034 Sporulation protein YtrH 10 107 8.0E-39 T 13-10-2018 IPR025689 Sporulation protein YtrH BMD_3895 6aeff053a0afb478ff8bdea93c4dad5a 219 Gene3D G3DSA:3.40.50.720 1 137 1.4E-34 T 13-10-2018 BMD_3895 6aeff053a0afb478ff8bdea93c4dad5a 219 Gene3D G3DSA:3.30.70.1450 138 219 6.0E-27 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_3895 6aeff053a0afb478ff8bdea93c4dad5a 219 SUPERFAMILY SSF116726 131 216 1.57E-20 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BMD_3895 6aeff053a0afb478ff8bdea93c4dad5a 219 SUPERFAMILY SSF51735 3 134 3.07E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_3895 6aeff053a0afb478ff8bdea93c4dad5a 219 Pfam PF02080 TrkA-C domain 149 216 7.2E-15 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BMD_3895 6aeff053a0afb478ff8bdea93c4dad5a 219 Pfam PF02254 TrkA-N domain 5 120 2.6E-24 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BMD_0986 5d2ab6c1d7f5c499c67b656d737a7e91 442 Gene3D G3DSA:2.30.40.10 15 415 2.3E-113 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BMD_0986 5d2ab6c1d7f5c499c67b656d737a7e91 442 Pfam PF01979 Amidohydrolase family 63 405 6.4E-23 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BMD_0986 5d2ab6c1d7f5c499c67b656d737a7e91 442 Gene3D G3DSA:3.20.20.140 68 376 2.3E-113 T 13-10-2018 BMD_0986 5d2ab6c1d7f5c499c67b656d737a7e91 442 SUPERFAMILY SSF51556 67 387 3.81E-72 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_3481 c6414756e2dea8f361546942e1eae8fa 289 Pfam PF01740 STAS domain 167 262 5.9E-12 T 13-10-2018 IPR002645 STAS domain BMD_3481 c6414756e2dea8f361546942e1eae8fa 289 SUPERFAMILY SSF52091 161 265 1.84E-15 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3481 c6414756e2dea8f361546942e1eae8fa 289 Gene3D G3DSA:3.30.750.24 158 274 3.4E-36 T 13-10-2018 IPR036513 STAS domain superfamily BMD_4647 64497bb3f9d14a64834319c7b3430c5f 102 ProSitePatterns PS01169 Ribosomal protein L21 signature. 71 93 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4647 64497bb3f9d14a64834319c7b3430c5f 102 SUPERFAMILY SSF141091 1 101 2.75E-39 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4647 64497bb3f9d14a64834319c7b3430c5f 102 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 1.0E-40 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4647 64497bb3f9d14a64834319c7b3430c5f 102 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 100 2.2E-39 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4647 64497bb3f9d14a64834319c7b3430c5f 102 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 27.802 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_2634 c08d37cbe3a0e9b11dbb7af54558ce7b 439 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BMD_2634 c08d37cbe3a0e9b11dbb7af54558ce7b 439 Pfam PF02754 Cysteine-rich domain 326 411 9.7E-14 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_2634 c08d37cbe3a0e9b11dbb7af54558ce7b 439 Pfam PF02754 Cysteine-rich domain 195 275 5.0E-18 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_2634 c08d37cbe3a0e9b11dbb7af54558ce7b 439 Pfam PF13183 4Fe-4S dicluster domain 20 89 6.1E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BMD_2634 c08d37cbe3a0e9b11dbb7af54558ce7b 439 Gene3D G3DSA:1.10.1060.10 2 110 2.5E-10 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_2634 c08d37cbe3a0e9b11dbb7af54558ce7b 439 SUPERFAMILY SSF46548 9 104 2.25E-17 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BMD_2634 c08d37cbe3a0e9b11dbb7af54558ce7b 439 PIRSF PIRSF000139 3 439 1.6E-139 T 13-10-2018 BMD_1901 b2403a21522baec6b85367e474f1fdfb 106 Gene3D G3DSA:3.10.20.30 4 91 1.1E-20 T 13-10-2018 IPR012675 Beta-grasp domain superfamily BMD_1901 b2403a21522baec6b85367e474f1fdfb 106 SUPERFAMILY SSF54292 11 90 7.58E-20 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BMD_1901 b2403a21522baec6b85367e474f1fdfb 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 81 4.2E-14 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BMD_1729 3d82a3e78464d42266c47ba30129449b 60 SUPERFAMILY SSF46785 1 50 9.68E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1729 3d82a3e78464d42266c47ba30129449b 60 Gene3D G3DSA:1.10.10.10 1 45 1.7E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2575 0bf3be3a053f4f737437b1f4373f4192 156 Pfam PF04463 Protein of unknown function (DUF523) 2 145 5.3E-41 T 13-10-2018 IPR007553 Domain of unknown function DUF523 BMD_0408 3341204faa3fbbb89360f7c401436f96 178 SUPERFAMILY SSF159234 5 171 1.44E-29 T 13-10-2018 IPR035930 FomD-like superfamily BMD_0408 3341204faa3fbbb89360f7c401436f96 178 Hamap MF_01568 UPF0374 protein . 1 176 49.548 T 13-10-2018 IPR016882 Uncharacterised protein family UPF0374 BMD_0408 3341204faa3fbbb89360f7c401436f96 178 Pfam PF04167 Protein of unknown function (DUF402) 60 125 1.5E-16 T 13-10-2018 IPR007295 Domain of unknown function DUF402 BMD_0408 3341204faa3fbbb89360f7c401436f96 178 Gene3D G3DSA:2.40.380.10 14 170 2.3E-10 T 13-10-2018 IPR035930 FomD-like superfamily BMD_0408 3341204faa3fbbb89360f7c401436f96 178 PIRSF PIRSF028345 1 178 1.3E-78 T 13-10-2018 IPR016882 Uncharacterised protein family UPF0374 BMD_2865 1d97f7cc6236bf6e1410273abf83e445 265 SUPERFAMILY SSF52540 6 242 3.59E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2865 1d97f7cc6236bf6e1410273abf83e445 265 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_2865 1d97f7cc6236bf6e1410273abf83e445 265 SMART SM00382 30 228 3.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2865 1d97f7cc6236bf6e1410273abf83e445 265 Pfam PF00005 ABC transporter 21 170 6.8E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2865 1d97f7cc6236bf6e1410273abf83e445 265 Gene3D G3DSA:3.40.50.300 2 264 2.5E-69 T 13-10-2018 BMD_4254 3ea3e59f3e4775d57d5ee4ee1a63da12 227 SUPERFAMILY SSF51419 4 224 1.37E-71 T 13-10-2018 IPR029066 PLP-binding barrel BMD_4254 3ea3e59f3e4775d57d5ee4ee1a63da12 227 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BMD_4254 3ea3e59f3e4775d57d5ee4ee1a63da12 227 PIRSF PIRSF004848 2 227 4.3E-66 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BMD_4254 3ea3e59f3e4775d57d5ee4ee1a63da12 227 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 7 225 27.267 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BMD_4254 3ea3e59f3e4775d57d5ee4ee1a63da12 227 Gene3D G3DSA:3.20.20.10 1 227 2.2E-74 T 13-10-2018 IPR029066 PLP-binding barrel BMD_4254 3ea3e59f3e4775d57d5ee4ee1a63da12 227 Pfam PF01168 Alanine racemase, N-terminal domain 14 224 4.2E-15 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BMD_4254 3ea3e59f3e4775d57d5ee4ee1a63da12 227 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 5 225 8.1E-52 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BMD_2372 8adfa2b95ff3839fd90b788f210dff72 280 SUPERFAMILY SSF53613 1 268 9.2E-50 T 13-10-2018 IPR029056 Ribokinase-like BMD_2372 8adfa2b95ff3839fd90b788f210dff72 280 Pfam PF00294 pfkB family carbohydrate kinase 170 264 1.0E-21 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_2372 8adfa2b95ff3839fd90b788f210dff72 280 Pfam PF00294 pfkB family carbohydrate kinase 11 143 4.2E-14 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_2372 8adfa2b95ff3839fd90b788f210dff72 280 Gene3D G3DSA:3.40.1190.20 1 267 4.1E-45 T 13-10-2018 IPR029056 Ribokinase-like BMD_2372 8adfa2b95ff3839fd90b788f210dff72 280 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 222 235 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BMD_5154 42975a9f80197e19d783762b25454600 283 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 185 191 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BMD_5154 42975a9f80197e19d783762b25454600 283 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 280 40.365 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BMD_5154 42975a9f80197e19d783762b25454600 283 Pfam PF05175 Methyltransferase small domain 106 193 1.5E-14 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BMD_5154 42975a9f80197e19d783762b25454600 283 Gene3D G3DSA:1.10.8.10 1 83 6.2E-18 T 13-10-2018 BMD_5154 42975a9f80197e19d783762b25454600 283 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 25 276 2.1E-81 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BMD_5154 42975a9f80197e19d783762b25454600 283 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 2 281 1.2E-76 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 BMD_5154 42975a9f80197e19d783762b25454600 283 Gene3D G3DSA:3.40.50.150 84 282 3.0E-61 T 13-10-2018 BMD_5154 42975a9f80197e19d783762b25454600 283 SUPERFAMILY SSF53335 3 278 1.64E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0028 dbfa82cf5c90596a3c7fdf6b2c4e3e92 89 TIGRFAM TIGR02862 spore_BofA: pro-sigmaK processing inhibitor BofA 7 88 9.8E-24 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA BMD_0028 dbfa82cf5c90596a3c7fdf6b2c4e3e92 89 Pfam PF07441 SigmaK-factor processing regulatory protein BofA 13 86 2.4E-18 T 13-10-2018 IPR010001 SigmaK-factor processing regulatory BofA BMD_3929 df3106c13ecf41852f57177e4071dcb3 322 Gene3D G3DSA:1.10.260.150 71 322 4.8E-81 T 13-10-2018 BMD_3929 df3106c13ecf41852f57177e4071dcb3 322 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 94 237 1.3E-33 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_3929 df3106c13ecf41852f57177e4071dcb3 322 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 94 236 6.4E-47 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_2337 ec4832fd0fe3d5a93ec356d2ee7c9711 506 PIRSF PIRSF012702 1 500 3.2E-152 T 13-10-2018 IPR009197 Microcystin LR degradation protein MlrC BMD_2337 ec4832fd0fe3d5a93ec356d2ee7c9711 506 Pfam PF07171 MlrC C-terminus 304 481 8.9E-47 T 13-10-2018 IPR010799 Microcystin LR degradation protein MlrC, C-terminal BMD_2337 ec4832fd0fe3d5a93ec356d2ee7c9711 506 Pfam PF07364 Metallopeptidase family M81 5 294 1.8E-91 T 13-10-2018 IPR015995 Microcystin LR degradation protein MlrC, N-terminal BMD_3851 13a40d1755ac6b7528bedd00d80a2ba6 93 SUPERFAMILY SSF103473 6 91 3.53E-5 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_5198 d3897ea354be0d50bf338243b30a97ad 411 Gene3D G3DSA:1.10.10.2840 278 411 3.5E-19 T 13-10-2018 BMD_5198 d3897ea354be0d50bf338243b30a97ad 411 Pfam PF13556 PucR C-terminal helix-turn-helix domain 348 405 1.8E-18 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain BMD_3778 362756d0acd0579d1ef0ead6e3b7a880 213 SMART SM00530 13 68 8.6E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3778 362756d0acd0579d1ef0ead6e3b7a880 213 Pfam PF01381 Helix-turn-helix 14 67 6.4E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3778 362756d0acd0579d1ef0ead6e3b7a880 213 SUPERFAMILY SSF47413 8 71 1.18E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3778 362756d0acd0579d1ef0ead6e3b7a880 213 Gene3D G3DSA:1.10.260.40 1 84 5.9E-12 T 13-10-2018 BMD_3778 362756d0acd0579d1ef0ead6e3b7a880 213 Pfam PF06803 Protein of unknown function (DUF1232) 173 204 1.6E-12 T 13-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 SUPERFAMILY SSF56024 227 379 9.2E-23 T 13-10-2018 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 Gene3D G3DSA:3.30.870.10 5 199 5.9E-33 T 13-10-2018 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 Pfam PF13091 PLD-like domain 15 165 5.2E-20 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 Pfam PF13091 PLD-like domain 245 369 9.1E-17 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 SMART SM00155 99 126 1.4E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 SMART SM00155 319 346 0.0043 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 SUPERFAMILY SSF56024 1 172 2.57E-31 T 13-10-2018 BMD_2062 52beb0b1cdf212fceba541ca482776ff 419 Gene3D G3DSA:3.30.870.10 200 417 1.4E-26 T 13-10-2018 BMD_2813 11d4f9f0975a936d7a4ce52c7e60d9b9 132 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 4 98 5.8E-17 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BMD_2813 11d4f9f0975a936d7a4ce52c7e60d9b9 132 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 53 93 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BMD_2813 11d4f9f0975a936d7a4ce52c7e60d9b9 132 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 5 130 5.4E-45 T 13-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 BMD_2813 11d4f9f0975a936d7a4ce52c7e60d9b9 132 Gene3D G3DSA:3.40.140.10 1 132 5.7E-58 T 13-10-2018 BMD_2813 11d4f9f0975a936d7a4ce52c7e60d9b9 132 SUPERFAMILY SSF53927 2 130 2.17E-49 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BMD_2083 35414e8892f6f0375d166e687f3a79ca 279 PIRSF PIRSF006483 1 278 3.6E-86 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_2083 35414e8892f6f0375d166e687f3a79ca 279 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 8 210 7.3E-65 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_2083 35414e8892f6f0375d166e687f3a79ca 279 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 216 270 1.8E-22 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_2083 35414e8892f6f0375d166e687f3a79ca 279 Gene3D G3DSA:3.30.70.120 189 263 8.0E-24 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_3832 823a4922d067a47cfd0ebc59fc90eecd 117 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 4 113 4.7E-33 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_2708 dae8429f70123ca08700a480ac14e976 226 Gene3D G3DSA:3.30.240.20 80 153 8.3E-25 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_2708 dae8429f70123ca08700a480ac14e976 226 Pfam PF04239 Protein of unknown function (DUF421) 88 199 6.4E-34 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_2708 dae8429f70123ca08700a480ac14e976 226 Gene3D G3DSA:3.30.240.20 165 224 8.8E-17 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_4920 7d93cb1e57bea8f7837c9c9dfec9988e 127 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 111 3.1E-14 T 13-10-2018 BMD_4920 7d93cb1e57bea8f7837c9c9dfec9988e 127 SUPERFAMILY SSF54593 1 125 1.88E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_4920 7d93cb1e57bea8f7837c9c9dfec9988e 127 Gene3D G3DSA:3.10.180.10 2 127 7.1E-28 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1866 ed03ba289cab33229a157716425cb7e5 294 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 59 291 7.8E-58 T 13-10-2018 BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 3.0E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 187 3.0E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 3.0E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 186 214 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 51 68 4.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 138 4.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 255 275 4.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 237 4.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 189 4.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 218 4.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1866 ed03ba289cab33229a157716425cb7e5 294 SUPERFAMILY SSF51735 48 291 1.13E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1866 ed03ba289cab33229a157716425cb7e5 294 Gene3D G3DSA:3.40.50.720 1 292 2.7E-89 T 13-10-2018 BMD_0801 3e1a2b43940ebdbc397f3e11ab34683d 202 TIGRFAM TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase 5 197 1.8E-38 T 13-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 BMD_0801 3e1a2b43940ebdbc397f3e11ab34683d 202 Pfam PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG 5 197 2.5E-43 T 13-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 BMD_3463 1da94b3743a85280b4b231b1a85a9fc7 487 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 5 487 74.174 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 BMD_3463 1da94b3743a85280b4b231b1a85a9fc7 487 SUPERFAMILY SSF53720 4 486 5.63E-157 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_3463 1da94b3743a85280b4b231b1a85a9fc7 487 Pfam PF00171 Aldehyde dehydrogenase family 19 483 7.9E-157 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_3463 1da94b3743a85280b4b231b1a85a9fc7 487 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 11 487 1.5E-183 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 BMD_3463 1da94b3743a85280b4b231b1a85a9fc7 487 Gene3D G3DSA:3.40.309.10 256 456 5.4E-161 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_3463 1da94b3743a85280b4b231b1a85a9fc7 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_3463 1da94b3743a85280b4b231b1a85a9fc7 487 Gene3D G3DSA:3.40.605.10 28 464 5.4E-161 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 SUPERFAMILY SSF46894 131 232 1.62E-32 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 7.1E-30 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 SUPERFAMILY SSF52172 2 132 1.14E-43 T 13-10-2018 IPR011006 CheY-like superfamily BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 SMART SM00448 3 114 8.4E-49 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 Pfam PF00072 Response regulator receiver domain 6 114 1.7E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 SMART SM00862 155 231 2.4E-29 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 Gene3D G3DSA:1.10.10.10 138 237 4.6E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4752 966658761ec01cdb5ff9f9082ce2c102 238 Gene3D G3DSA:3.40.50.2300 2 137 1.4E-40 T 13-10-2018 BMD_0086 5e4e97cd388c077bcf3c5acb6e7cca6f 287 SMART SM00220 1 246 8.8E-4 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BMD_0086 5e4e97cd388c077bcf3c5acb6e7cca6f 287 SUPERFAMILY SSF56112 2 143 2.32E-20 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_0086 5e4e97cd388c077bcf3c5acb6e7cca6f 287 Pfam PF00069 Protein kinase domain 2 204 5.2E-12 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BMD_0086 5e4e97cd388c077bcf3c5acb6e7cca6f 287 Gene3D G3DSA:3.30.200.20 2 74 6.3E-18 T 13-10-2018 BMD_0086 5e4e97cd388c077bcf3c5acb6e7cca6f 287 Gene3D G3DSA:1.10.510.10 75 228 6.3E-18 T 13-10-2018 BMD_1958 cc4724222d5dcd35b1de0835a79bd2e3 308 Pfam PF00892 EamA-like transporter family 159 288 9.9E-7 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_1958 cc4724222d5dcd35b1de0835a79bd2e3 308 Pfam PF00892 EamA-like transporter family 9 148 2.8E-10 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_1958 cc4724222d5dcd35b1de0835a79bd2e3 308 SUPERFAMILY SSF103481 197 291 4.32E-10 T 13-10-2018 BMD_1958 cc4724222d5dcd35b1de0835a79bd2e3 308 SUPERFAMILY SSF103481 42 149 3.53E-10 T 13-10-2018 BMD_1958 cc4724222d5dcd35b1de0835a79bd2e3 308 TIGRFAM TIGR00688 rarD: protein RarD 8 265 3.3E-83 T 13-10-2018 IPR004626 RarD protein GO:0005887 BMD_1206 304ab31b1314d3e949d140cd7645789b 247 Pfam PF04397 LytTr DNA-binding domain 146 241 3.8E-19 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_1206 304ab31b1314d3e949d140cd7645789b 247 SUPERFAMILY SSF52172 1 121 3.84E-28 T 13-10-2018 IPR011006 CheY-like superfamily BMD_1206 304ab31b1314d3e949d140cd7645789b 247 Pfam PF00072 Response regulator receiver domain 7 115 3.1E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1206 304ab31b1314d3e949d140cd7645789b 247 Gene3D G3DSA:3.40.50.2300 1 133 1.5E-30 T 13-10-2018 BMD_1206 304ab31b1314d3e949d140cd7645789b 247 SMART SM00850 145 242 2.5E-22 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BMD_1206 304ab31b1314d3e949d140cd7645789b 247 SMART SM00448 4 115 1.8E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_1206 304ab31b1314d3e949d140cd7645789b 247 Gene3D G3DSA:2.40.50.1020 134 237 2.1E-17 T 13-10-2018 BMD_4729 cd65c18b0ffcc2ee683e1dd9a0cfcb61 344 SUPERFAMILY SSF46589 14 100 2.88E-22 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BMD_4729 cd65c18b0ffcc2ee683e1dd9a0cfcb61 344 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 9 341 49.341 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 BMD_4729 cd65c18b0ffcc2ee683e1dd9a0cfcb61 344 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 22 88 1.9E-26 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BMD_4729 cd65c18b0ffcc2ee683e1dd9a0cfcb61 344 Gene3D G3DSA:3.30.930.10 8 344 6.4E-127 T 13-10-2018 BMD_4729 cd65c18b0ffcc2ee683e1dd9a0cfcb61 344 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 40 342 1.4E-115 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BMD_4729 cd65c18b0ffcc2ee683e1dd9a0cfcb61 344 SUPERFAMILY SSF55681 93 342 8.81E-83 T 13-10-2018 BMD_4729 cd65c18b0ffcc2ee683e1dd9a0cfcb61 344 Pfam PF01409 tRNA synthetases class II core domain (F) 93 341 2.5E-110 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 BMD_0823 500b7b6bf35e75f04bacc9ee377d13eb 282 Gene3D G3DSA:3.20.20.20 5 279 1.7E-114 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_0823 500b7b6bf35e75f04bacc9ee377d13eb 282 SUPERFAMILY SSF51717 11 276 8.5E-101 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_0823 500b7b6bf35e75f04bacc9ee377d13eb 282 Pfam PF00809 Pterin binding enzyme 26 259 1.2E-88 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_0823 500b7b6bf35e75f04bacc9ee377d13eb 282 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 25 273 5.5E-100 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 BMD_0823 500b7b6bf35e75f04bacc9ee377d13eb 282 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 59 72 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BMD_1998 abee264b7d5014f626638636af9daf5e 264 Pfam PF01618 MotA/TolQ/ExbB proton channel family 104 217 3.2E-27 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BMD_1998 abee264b7d5014f626638636af9daf5e 264 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 186 203 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site BMD_1978 47ff129f6e863a6bd791fe49f3a7960c 366 Pfam PF00535 Glycosyl transferase family 2 35 177 3.9E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_1978 47ff129f6e863a6bd791fe49f3a7960c 366 Gene3D G3DSA:3.90.550.10 26 228 8.4E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1978 47ff129f6e863a6bd791fe49f3a7960c 366 SUPERFAMILY SSF53448 29 247 9.21E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0891 264be66b3af94ceadad36dab9283e0a4 209 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 2 202 2.7E-27 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_0891 264be66b3af94ceadad36dab9283e0a4 209 SMART SM00934 2 203 4.0E-37 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_0891 264be66b3af94ceadad36dab9283e0a4 209 SUPERFAMILY SSF51366 3 208 8.87E-40 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_0891 264be66b3af94ceadad36dab9283e0a4 209 Gene3D G3DSA:3.20.20.70 1 209 1.1E-73 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0891 264be66b3af94ceadad36dab9283e0a4 209 TIGRFAM TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase 2 207 1.7E-84 T 13-10-2018 IPR017553 3-hexulose-6-phosphate synthase GO:0005975|GO:0043801 KEGG: 00030+4.1.2.43|KEGG: 00680+4.1.2.43|MetaCyc: PWY-1861|MetaCyc: PWY-7796 BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 4 176 8.2E-43 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 SMART SM00646 63 176 2.3E-37 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 Pfam PF01476 LysM domain 189 232 6.4E-12 T 13-10-2018 IPR018392 LysM domain BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 Pfam PF01476 LysM domain 236 279 2.6E-15 T 13-10-2018 IPR018392 LysM domain BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 SMART SM00257 235 279 5.6E-18 T 13-10-2018 IPR018392 LysM domain BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 SMART SM00257 188 232 2.2E-15 T 13-10-2018 IPR018392 LysM domain BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 SUPERFAMILY SSF54106 187 233 1.44E-10 T 13-10-2018 BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 SUPERFAMILY SSF54106 234 279 1.83E-12 T 13-10-2018 BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 SUPERFAMILY SSF53187 1 181 2.23E-49 T 13-10-2018 BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 Gene3D G3DSA:3.40.630.40 1 184 4.2E-52 T 13-10-2018 BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 Gene3D G3DSA:3.10.350.10 186 232 1.0E-19 T 13-10-2018 IPR036779 LysM domain superfamily BMD_3168 1c15f8a9723d3176298c4e5bf1276284 281 Gene3D G3DSA:3.10.350.10 233 279 3.6E-23 T 13-10-2018 IPR036779 LysM domain superfamily BMD_5100 7b684fb599e9126ead2ff1b12a2f5bab 155 SUPERFAMILY SSF140566 3 126 5.89E-14 T 13-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 BMD_5100 7b684fb599e9126ead2ff1b12a2f5bab 155 Gene3D G3DSA:1.20.58.300 5 126 5.7E-5 T 13-10-2018 BMD_5100 7b684fb599e9126ead2ff1b12a2f5bab 155 Pfam PF05130 FlgN protein 3 140 2.7E-19 T 13-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 97 116 2.0E-32 T 13-10-2018 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 469 488 2.0E-32 T 13-10-2018 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 492 510 2.0E-32 T 13-10-2018 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 352 368 2.0E-32 T 13-10-2018 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 439 458 2.0E-32 T 13-10-2018 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 SUPERFAMILY SSF52540 55 328 3.25E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 Gene3D G3DSA:3.40.50.300 53 263 4.0E-33 T 13-10-2018 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 442 450 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 93 266 2.8E-19 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 Gene3D G3DSA:3.30.230.10 345 546 7.1E-51 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 TIGRFAM TIGR02902 spore_lonB: ATP-dependent protease LonB 5 533 1.8E-277 T 13-10-2018 IPR014251 Sporulation protease LonB BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 SUPERFAMILY SSF54211 350 532 1.56E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 173 188 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 345 534 7.9E-36 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 BMD_4676 309ffdfb4dbcaaa635db2e498d9e4d4d 555 SMART SM00382 89 267 2.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3915 e2e75ff2de481f0ff884464ca09f063a 316 SUPERFAMILY SSF52540 1 242 1.15E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3915 e2e75ff2de481f0ff884464ca09f063a 316 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_3915 e2e75ff2de481f0ff884464ca09f063a 316 Gene3D G3DSA:3.40.50.300 1 296 3.0E-79 T 13-10-2018 BMD_3915 e2e75ff2de481f0ff884464ca09f063a 316 SMART SM00382 27 214 5.8E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3915 e2e75ff2de481f0ff884464ca09f063a 316 Pfam PF00005 ABC transporter 18 164 2.4E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0554 4bee995a0e21efd7f550cee13badb16d 255 Hamap MF_00443 Thiazole synthase [thiG]. 1 254 42.168 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 BMD_0554 4bee995a0e21efd7f550cee13badb16d 255 Gene3D G3DSA:3.20.20.70 1 255 6.9E-118 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0554 4bee995a0e21efd7f550cee13badb16d 255 SUPERFAMILY SSF110399 1 240 8.76E-84 T 13-10-2018 BMD_0554 4bee995a0e21efd7f550cee13badb16d 255 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 248 7.3E-111 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 BMD_3824 104b553b28383dc3f619c6a36d262dae 418 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 15 412 1.1E-162 T 13-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 BMD_3824 104b553b28383dc3f619c6a36d262dae 418 Gene3D G3DSA:3.90.550.10 38 268 8.9E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3824 104b553b28383dc3f619c6a36d262dae 418 SUPERFAMILY SSF53448 39 318 2.6E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3824 104b553b28383dc3f619c6a36d262dae 418 Pfam PF13641 Glycosyltransferase like family 2 56 277 7.8E-36 T 13-10-2018 BMD_3526 372ee1c47aebf3c2b39747be6ba9c82e 205 Pfam PF01184 GPR1/FUN34/yaaH family 9 196 6.1E-24 T 13-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 BMD_2592 e60fe8666be08b643dbaa5cf104a6516 522 SUPERFAMILY SSF46785 431 515 1.03E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2592 e60fe8666be08b643dbaa5cf104a6516 522 Gene3D G3DSA:1.10.10.10 382 521 5.5E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2592 e60fe8666be08b643dbaa5cf104a6516 522 Pfam PF09382 RQC domain 431 512 9.4E-8 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BMD_2144 efb469ccd8ea27633f2e0e7b4ade7995 187 Pfam PF00398 Ribosomal RNA adenine dimethylase 24 128 5.2E-9 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BMD_2144 efb469ccd8ea27633f2e0e7b4ade7995 187 Gene3D G3DSA:3.40.50.150 14 171 1.5E-18 T 13-10-2018 BMD_2144 efb469ccd8ea27633f2e0e7b4ade7995 187 SUPERFAMILY SSF53335 5 161 6.0E-21 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 656 666 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 Gene3D G3DSA:2.60.120.380 33 140 4.9E-6 T 13-10-2018 BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 Pfam PF00082 Subtilase family 462 699 5.8E-49 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 Gene3D G3DSA:2.60.40.10 902 978 2.5E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 Gene3D G3DSA:2.60.40.10 818 896 5.6E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 Gene3D G3DSA:2.60.40.10 743 812 2.2E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 Gene3D G3DSA:2.60.40.10 985 1061 1.9E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 SUPERFAMILY SSF52743 454 739 1.83E-85 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 PRINTS PR00723 Subtilisin serine protease family (S8) signature 501 514 7.5E-15 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 PRINTS PR00723 Subtilisin serine protease family (S8) signature 655 671 7.5E-15 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 PRINTS PR00723 Subtilisin serine protease family (S8) signature 461 480 7.5E-15 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 Gene3D G3DSA:3.40.50.200 392 742 5.8E-87 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_1153 2430e4066f4960121eeca2dd21aecf0c 1066 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 505 515 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BMD_3975 60efdbdf692ef3592594bccb928221f1 132 Gene3D G3DSA:3.40.50.620 1 132 5.3E-30 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_3975 60efdbdf692ef3592594bccb928221f1 132 SUPERFAMILY SSF52402 1 132 5.11E-28 T 13-10-2018 BMD_3975 60efdbdf692ef3592594bccb928221f1 132 Pfam PF00582 Universal stress protein family 1 132 1.1E-25 T 13-10-2018 IPR006016 UspA BMD_3975 60efdbdf692ef3592594bccb928221f1 132 PRINTS PR01438 Universal stress protein signature 2 20 4.2E-20 T 13-10-2018 IPR006015 Universal stress protein A BMD_3975 60efdbdf692ef3592594bccb928221f1 132 PRINTS PR01438 Universal stress protein signature 92 104 4.2E-20 T 13-10-2018 IPR006015 Universal stress protein A BMD_3975 60efdbdf692ef3592594bccb928221f1 132 PRINTS PR01438 Universal stress protein signature 110 132 4.2E-20 T 13-10-2018 IPR006015 Universal stress protein A BMD_1894 4edaac58f4f4fa55997123a37813dbad 110 Gene3D G3DSA:1.20.58.1000 6 110 5.7E-32 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily BMD_1894 4edaac58f4f4fa55997123a37813dbad 110 Pfam PF02583 Metal-sensitive transcriptional repressor 29 107 2.3E-29 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 BMD_4385 c9d1b3c2601b48fa1c3e93a875eb1ef1 150 Gene3D G3DSA:1.10.10.10 1 88 1.9E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4385 c9d1b3c2601b48fa1c3e93a875eb1ef1 150 SUPERFAMILY SSF46785 6 141 1.09E-39 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4385 c9d1b3c2601b48fa1c3e93a875eb1ef1 150 Gene3D G3DSA:3.30.1490.190 93 150 2.4E-17 T 13-10-2018 BMD_4385 c9d1b3c2601b48fa1c3e93a875eb1ef1 150 Pfam PF01475 Ferric uptake regulator family 15 136 4.6E-41 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BMD_0868 01a354f6f2a00a99ca7fd256780e619e 461 Pfam PF00296 Luciferase-like monooxygenase 29 390 7.0E-54 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_0868 01a354f6f2a00a99ca7fd256780e619e 461 SUPERFAMILY SSF51679 1 437 2.88E-123 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_0868 01a354f6f2a00a99ca7fd256780e619e 461 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 434 8.3E-169 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_0868 01a354f6f2a00a99ca7fd256780e619e 461 Gene3D G3DSA:3.20.20.30 1 458 1.6E-142 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_0868 01a354f6f2a00a99ca7fd256780e619e 461 PIRSF PIRSF000337 3 446 3.9E-142 T 13-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 BMD_4203 5c5b294aeb6389c986c79782589f88cb 117 SUPERFAMILY SSF88659 8 102 3.55E-34 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BMD_4203 5c5b294aeb6389c986c79782589f88cb 117 Hamap MF_00245 UPF0122 protein . 9 110 22.174 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like BMD_4203 5c5b294aeb6389c986c79782589f88cb 117 Pfam PF04297 Putative helix-turn-helix protein, YlxM / p13 like 9 105 6.4E-41 T 13-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like BMD_4203 5c5b294aeb6389c986c79782589f88cb 117 Gene3D G3DSA:1.10.10.10 5 117 7.0E-38 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 SUPERFAMILY SSF51735 6 257 1.74E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 257 3.4E-44 T 13-10-2018 BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 Gene3D G3DSA:3.40.50.720 1 258 2.3E-68 T 13-10-2018 BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 7.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 97 108 7.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 160 7.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 189 7.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 208 7.0E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 157 185 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 170 189 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_1639 d98cd0b16e5ba1f092d6c790ae29b474 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 158 2.8E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_5122 a69c9e3d54a12d1d4bbb6c7ee90430f0 145 Pfam PF14183 YwpF-like protein 2 131 2.9E-42 T 13-10-2018 IPR025573 YwpF-like protein BMD_2952 d1dd9a42dc315dde50eed4c074fc64ea 184 Gene3D G3DSA:3.30.460.10 3 172 2.7E-60 T 13-10-2018 BMD_2952 d1dd9a42dc315dde50eed4c074fc64ea 184 Pfam PF04229 GrpB protein 7 163 7.1E-56 T 13-10-2018 IPR007344 GrpB/Dephospho-CoA kinase BMD_2952 d1dd9a42dc315dde50eed4c074fc64ea 184 SUPERFAMILY SSF81301 9 171 3.27E-56 T 13-10-2018 BMD_4740 457ab014c6aea1d2e56b8f898837de68 286 Pfam PF08812 YtxC-like family 56 269 1.6E-46 T 13-10-2018 IPR014199 Sporulation protein YtxC BMD_2233 7f51a2d738e29d1f8c0ac26701f89cde 69 Pfam PF14169 Cold-inducible protein YdjO 1 60 3.3E-23 T 13-10-2018 IPR025916 Cold-inducible protein YdjO BMD_4913 1728e860a1fcc65c6c3f9e6cd35291fd 255 Gene3D G3DSA:3.40.50.1400 126 247 8.5E-21 T 13-10-2018 BMD_4913 1728e860a1fcc65c6c3f9e6cd35291fd 255 Gene3D G3DSA:3.40.50.1400 1 124 4.7E-29 T 13-10-2018 BMD_4913 1728e860a1fcc65c6c3f9e6cd35291fd 255 Pfam PF01903 CbiX 9 113 2.1E-29 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 BMD_4913 1728e860a1fcc65c6c3f9e6cd35291fd 255 Pfam PF01903 CbiX 134 234 8.2E-21 T 13-10-2018 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 BMD_4913 1728e860a1fcc65c6c3f9e6cd35291fd 255 SUPERFAMILY SSF53800 1 241 1.85E-51 T 13-10-2018 BMD_4718 931b9b770ced987c90c9f863c5a2a3c2 257 SUPERFAMILY SSF52096 2 257 3.85E-83 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4718 931b9b770ced987c90c9f863c5a2a3c2 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BMD_4718 931b9b770ced987c90c9f863c5a2a3c2 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 255 6.9E-68 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_4718 931b9b770ced987c90c9f863c5a2a3c2 257 Gene3D G3DSA:3.90.226.10 1 257 1.9E-90 T 13-10-2018 BMD_5259 14055660f49ae88eba88216a5de71799 65 Pfam PF06107 Bacterial protein of unknown function (DUF951) 7 60 4.7E-31 T 13-10-2018 IPR009296 Protein of unknown function DUF951 BMD_5259 14055660f49ae88eba88216a5de71799 65 PIRSF PIRSF037263 1 65 2.6E-36 T 13-10-2018 IPR009296 Protein of unknown function DUF951 BMD_0648 cd23bf45aed39860b3399d1c81808599 135 ProDom PD031981 GERMINATION SPORE GERPE PE PROBABLE SPORULATION 6 109 2.0E-18 T 13-10-2018 IPR024496 Spore germination protein GerPE BMD_0648 cd23bf45aed39860b3399d1c81808599 135 Pfam PF10970 Spore germination protein GerPE 5 116 3.8E-34 T 13-10-2018 IPR024496 Spore germination protein GerPE BMD_4635 d3042cf60198825e01493b92d8c6bab4 426 Pfam PF01476 LysM domain 6 50 3.1E-16 T 13-10-2018 IPR018392 LysM domain BMD_4635 d3042cf60198825e01493b92d8c6bab4 426 Gene3D G3DSA:3.10.350.10 2 58 3.0E-17 T 13-10-2018 IPR036779 LysM domain superfamily BMD_4635 d3042cf60198825e01493b92d8c6bab4 426 SMART SM00257 5 50 2.2E-18 T 13-10-2018 IPR018392 LysM domain BMD_4635 d3042cf60198825e01493b92d8c6bab4 426 SUPERFAMILY SSF54106 4 50 3.27E-12 T 13-10-2018 BMD_4635 d3042cf60198825e01493b92d8c6bab4 426 TIGRFAM TIGR02899 spore_safA: spore coat assembly protein SafA 8 51 3.1E-27 T 13-10-2018 IPR014248 Spore coat assembly protein SafA BMD_4794 c3e24d3483d159b36e4840f1edd3b562 159 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 98 115 - T 13-10-2018 IPR000614 Free Met sulfoxide reductase conserved site BMD_4794 c3e24d3483d159b36e4840f1edd3b562 159 SMART SM00065 31 156 0.0047 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_4794 c3e24d3483d159b36e4840f1edd3b562 159 Gene3D G3DSA:3.30.450.40 10 159 1.6E-65 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_4794 c3e24d3483d159b36e4840f1edd3b562 159 Pfam PF13185 GAF domain 48 153 4.6E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 BMD_4794 c3e24d3483d159b36e4840f1edd3b562 159 SUPERFAMILY SSF55781 12 153 2.03E-44 T 13-10-2018 BMD_4941 f7be18faab5cad8fb6f68f462703030c 204 SMART SM00479 6 180 1.1E-21 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_4941 f7be18faab5cad8fb6f68f462703030c 204 Pfam PF00929 Exonuclease 8 171 2.0E-20 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BMD_4941 f7be18faab5cad8fb6f68f462703030c 204 Gene3D G3DSA:3.30.420.10 2 200 3.6E-40 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_4941 f7be18faab5cad8fb6f68f462703030c 204 SUPERFAMILY SSF53098 6 177 3.08E-29 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_1747 1f33b58bde5cb6cce8168092ab5cc067 540 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 40 504 1.2E-192 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_1747 1f33b58bde5cb6cce8168092ab5cc067 540 PIRSF PIRSF005690 26 518 1.1E-188 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 1.5E-18 T 13-10-2018 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 PRINTS PR00173 Glutamate-aspartate symporter signature 80 105 1.5E-18 T 13-10-2018 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 PRINTS PR00173 Glutamate-aspartate symporter signature 371 391 1.5E-18 T 13-10-2018 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 PRINTS PR00173 Glutamate-aspartate symporter signature 344 363 1.5E-18 T 13-10-2018 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 PRINTS PR00173 Glutamate-aspartate symporter signature 156 178 1.5E-18 T 13-10-2018 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 Pfam PF00375 Sodium:dicarboxylate symporter family 15 416 1.9E-95 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 Gene3D G3DSA:1.10.3860.10 2 434 7.3E-101 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_1992 d50d3b5c6e1c171d5b0b27ac12750834 438 SUPERFAMILY SSF118215 15 417 7.59E-89 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_3664 4c48610fe4e0e4179db3355151dbe171 341 Gene3D G3DSA:1.10.30.40 91 154 8.0E-22 T 13-10-2018 BMD_3664 4c48610fe4e0e4179db3355151dbe171 341 Gene3D G3DSA:3.40.50.11240 156 336 1.1E-62 T 13-10-2018 BMD_3664 4c48610fe4e0e4179db3355151dbe171 341 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 109 336 3.6E-80 T 13-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 BMD_5211 2a424e7d41163063e817d8596fa4b24e 500 Pfam PF03023 MviN-like protein 29 451 3.8E-65 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BMD_5211 2a424e7d41163063e817d8596fa4b24e 500 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 8 495 1.7E-72 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BMD_5211 2a424e7d41163063e817d8596fa4b24e 500 PRINTS PR01806 Virulence factor MviN signature 251 277 4.7E-19 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BMD_5211 2a424e7d41163063e817d8596fa4b24e 500 PRINTS PR01806 Virulence factor MviN signature 34 53 4.7E-19 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BMD_5211 2a424e7d41163063e817d8596fa4b24e 500 PRINTS PR01806 Virulence factor MviN signature 349 368 4.7E-19 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BMD_5211 2a424e7d41163063e817d8596fa4b24e 500 PRINTS PR01806 Virulence factor MviN signature 401 418 4.7E-19 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BMD_5211 2a424e7d41163063e817d8596fa4b24e 500 PRINTS PR01806 Virulence factor MviN signature 128 152 4.7E-19 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BMD_0710 72c2191c4e6e0065f3f9ba658cf79dcb 308 Pfam PF00005 ABC transporter 29 181 1.6E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0710 72c2191c4e6e0065f3f9ba658cf79dcb 308 Gene3D G3DSA:3.40.50.300 5 306 9.6E-96 T 13-10-2018 BMD_0710 72c2191c4e6e0065f3f9ba658cf79dcb 308 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 280 6.4E-9 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BMD_0710 72c2191c4e6e0065f3f9ba658cf79dcb 308 SMART SM00382 37 231 7.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_0710 72c2191c4e6e0065f3f9ba658cf79dcb 308 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_0710 72c2191c4e6e0065f3f9ba658cf79dcb 308 SUPERFAMILY SSF52540 8 253 7.1E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0711 015daac6818b033e57ee41c0881be50a 191 Pfam PF13508 Acetyltransferase (GNAT) domain 52 110 1.3E-7 T 13-10-2018 IPR000182 GNAT domain BMD_0711 015daac6818b033e57ee41c0881be50a 191 SUPERFAMILY SSF55729 47 116 2.03E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0711 015daac6818b033e57ee41c0881be50a 191 Gene3D G3DSA:3.40.630.30 1 135 1.8E-23 T 13-10-2018 BMD_5021 45088295def148c1bf20fb63af19e74b 338 Gene3D G3DSA:3.40.50.720 1 250 2.4E-74 T 13-10-2018 BMD_5021 45088295def148c1bf20fb63af19e74b 338 Pfam PF00899 ThiF family 5 241 5.6E-62 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BMD_5021 45088295def148c1bf20fb63af19e74b 338 SUPERFAMILY SSF69572 3 329 6.93E-86 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BMD_0731 368078f5554282662fcb1edc06767430 302 SUPERFAMILY SSF55120 76 293 3.68E-67 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0731 368078f5554282662fcb1edc06767430 302 Pfam PF00849 RNA pseudouridylate synthase 92 240 3.0E-29 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0731 368078f5554282662fcb1edc06767430 302 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0731 368078f5554282662fcb1edc06767430 302 Gene3D G3DSA:3.30.2350.10 84 299 6.8E-63 T 13-10-2018 BMD_0731 368078f5554282662fcb1edc06767430 302 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 39 293 1.6E-68 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0872 faf705636686dafcb104cde03d8d5e6c 314 Pfam PF01497 Periplasmic binding protein 58 286 8.0E-34 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain BMD_0872 faf705636686dafcb104cde03d8d5e6c 314 SUPERFAMILY SSF53807 40 305 1.3E-61 T 13-10-2018 BMD_0872 faf705636686dafcb104cde03d8d5e6c 314 Gene3D G3DSA:3.40.50.1980 34 144 1.6E-30 T 13-10-2018 BMD_0872 faf705636686dafcb104cde03d8d5e6c 314 Gene3D G3DSA:3.40.50.1980 146 312 8.1E-43 T 13-10-2018 BMD_3728 a097ca55534008059154d403f0d3b6c3 306 Pfam PF02517 CAAX protease self-immunity 148 244 4.5E-15 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BMD_2931 22b147f527bd1dec7ece1206929b3384 406 Pfam PF04235 Protein of unknown function (DUF418) 234 393 3.5E-34 T 13-10-2018 IPR007349 Domain of unknown function DUF418 BMD_5219 c93f91913a796a614dc5ab86d5142d6c 253 Pfam PF06738 Putative threonine/serine exporter 14 252 6.4E-78 T 13-10-2018 IPR010619 Putative threonine/serine exporter BMD_2685 c32f5b0d8a04a40e1bc9571d56b45efe 192 Gene3D G3DSA:2.60.60.30 19 187 2.7E-68 T 13-10-2018 BMD_2685 c32f5b0d8a04a40e1bc9571d56b45efe 192 Pfam PF02342 TerD domain 1 188 1.6E-82 T 13-10-2018 IPR003325 TerD domain BMD_1869 9a0dcc9c78304e88cf9b8159b41b7a69 108 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 7 107 3.8E-11 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_0885 f5a8c8052f4e9d672c2bfb4989d5c047 223 Pfam PF03070 TENA/THI-4/PQQC family 9 215 1.9E-65 T 13-10-2018 IPR004305 Thiaminase-2/PQQC BMD_0885 f5a8c8052f4e9d672c2bfb4989d5c047 223 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 12 215 1.1E-73 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 BMD_0885 f5a8c8052f4e9d672c2bfb4989d5c047 223 SUPERFAMILY SSF48613 1 214 1.93E-77 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BMD_0885 f5a8c8052f4e9d672c2bfb4989d5c047 223 Gene3D G3DSA:1.20.910.10 1 223 1.6E-76 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BMD_0885 f5a8c8052f4e9d672c2bfb4989d5c047 223 PIRSF PIRSF003170 1 218 1.8E-33 T 13-10-2018 IPR026285 TenA_E protein BMD_2853 d97c41cf327faa6627c6762033359058 343 Pfam PF00107 Zinc-binding dehydrogenase 170 297 1.2E-20 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BMD_2853 d97c41cf327faa6627c6762033359058 343 Gene3D G3DSA:3.90.180.10 19 324 4.4E-95 T 13-10-2018 BMD_2853 d97c41cf327faa6627c6762033359058 343 Gene3D G3DSA:3.40.50.720 148 281 4.4E-95 T 13-10-2018 BMD_2853 d97c41cf327faa6627c6762033359058 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 127 4.8E-33 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BMD_2853 d97c41cf327faa6627c6762033359058 343 SUPERFAMILY SSF50129 1 169 1.11E-46 T 13-10-2018 IPR011032 GroES-like superfamily BMD_2853 d97c41cf327faa6627c6762033359058 343 SUPERFAMILY SSF51735 134 301 1.18E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2856 80a3ad6bb409738bee3c69913dd54922 293 Gene3D G3DSA:2.70.70.10 133 283 1.0E-25 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_2856 80a3ad6bb409738bee3c69913dd54922 293 SUPERFAMILY SSF51261 170 261 3.3E-18 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_2856 80a3ad6bb409738bee3c69913dd54922 293 Pfam PF01551 Peptidase family M23 170 262 1.3E-16 T 13-10-2018 IPR016047 Peptidase M23 BMD_1111 ebadd21e4f7872823bb3ade42838a58a 184 SUPERFAMILY SSF51161 35 175 4.02E-30 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_1111 ebadd21e4f7872823bb3ade42838a58a 184 PIRSF PIRSF000441 6 184 5.2E-36 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BMD_1111 ebadd21e4f7872823bb3ade42838a58a 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 157 2.1E-5 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_1111 ebadd21e4f7872823bb3ade42838a58a 184 Gene3D G3DSA:2.160.10.10 79 183 6.8E-25 T 13-10-2018 BMD_1426 70879d79c23bbdf92e2186d5d523e4cc 317 SUPERFAMILY SSF161098 77 307 5.1E-57 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1426 70879d79c23bbdf92e2186d5d523e4cc 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 309 4.4E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1426 70879d79c23bbdf92e2186d5d523e4cc 317 Gene3D G3DSA:1.10.3720.10 73 316 6.1E-68 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4956 a8cc062cce91ac54dc43e0d9dfed8341 79 Pfam PF07293 Protein of unknown function (DUF1450) 2 76 8.1E-37 T 13-10-2018 IPR009910 Protein of unknown function DUF1450 BMD_4956 a8cc062cce91ac54dc43e0d9dfed8341 79 ProDom PD058324 UPF0349 LMO2392 BLI03401/BL03152 SA0800 SAR0901 LIN2491 SERP0525 GK2958 BT9727_4649 BC4937 4 78 1.0E-29 T 13-10-2018 BMD_4956 a8cc062cce91ac54dc43e0d9dfed8341 79 Hamap MF_01542 UPF0349 protein . 2 78 29.401 T 13-10-2018 IPR022916 Protein of unknown function UPF0349 BMD_3379 ee530e7a6d654cc3b98f6f2846b9eb7e 189 Pfam PF04011 LemA family 10 185 1.8E-75 T 13-10-2018 IPR007156 LemA BMD_3379 ee530e7a6d654cc3b98f6f2846b9eb7e 189 SUPERFAMILY SSF140478 27 174 1.2E-56 T 13-10-2018 IPR023353 LemA-like domain superfamily BMD_3379 ee530e7a6d654cc3b98f6f2846b9eb7e 189 Gene3D G3DSA:1.20.1440.20 17 185 1.3E-73 T 13-10-2018 IPR023353 LemA-like domain superfamily BMD_1044 09a58dfe7abc07f09f20ddd69b3b1941 399 SUPERFAMILY SSF75304 5 384 7.98E-91 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_1044 09a58dfe7abc07f09f20ddd69b3b1941 399 Pfam PF01425 Amidase 248 380 1.7E-9 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_1044 09a58dfe7abc07f09f20ddd69b3b1941 399 Pfam PF01425 Amidase 19 196 2.5E-54 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_1044 09a58dfe7abc07f09f20ddd69b3b1941 399 ProSitePatterns PS00571 Amidases signature. 106 137 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 BMD_1044 09a58dfe7abc07f09f20ddd69b3b1941 399 Gene3D G3DSA:3.90.1300.10 12 387 6.2E-91 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BMD_1635 bf425045abb498ec4f307e6522808a2a 229 Gene3D G3DSA:3.40.50.1820 2 142 2.6E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1635 bf425045abb498ec4f307e6522808a2a 229 PRINTS PR00111 Alpha/beta hydrolase fold signature 51 66 5.7E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_1635 bf425045abb498ec4f307e6522808a2a 229 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 107 5.7E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_1635 bf425045abb498ec4f307e6522808a2a 229 PRINTS PR00111 Alpha/beta hydrolase fold signature 108 121 5.7E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_1635 bf425045abb498ec4f307e6522808a2a 229 SUPERFAMILY SSF53474 7 228 8.24E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_1635 bf425045abb498ec4f307e6522808a2a 229 Pfam PF00561 alpha/beta hydrolase fold 26 131 7.7E-20 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BMD_1635 bf425045abb498ec4f307e6522808a2a 229 Gene3D G3DSA:3.40.50.1820 143 229 2.3E-11 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4762 66adbcc81fae0e9dd291c75167982530 293 Gene3D G3DSA:3.90.226.10 34 287 2.7E-89 T 13-10-2018 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 257 266 5.2E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 235 246 5.2E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 135 149 5.2E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 169 187 5.2E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 206 223 5.2E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 SUPERFAMILY SSF52096 34 285 2.42E-80 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4762 66adbcc81fae0e9dd291c75167982530 293 Pfam PF01039 Carboxyl transferase domain 66 248 7.2E-21 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 25 288 3.5E-129 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4762 66adbcc81fae0e9dd291c75167982530 293 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 3 287 38.895 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BMD_4270 3a5b51811d94df77f7a4ab9d96d18529 119 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 36 117 1.6E-18 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 BMD_4270 3a5b51811d94df77f7a4ab9d96d18529 119 Pfam PF04977 Septum formation initiator 43 118 5.4E-10 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC BMD_4270 3a5b51811d94df77f7a4ab9d96d18529 119 Hamap MF_00910 Cell division protein FtsL [ftsL]. 36 118 14.4 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 BMD_4332 736a3ab2e1491793c5174a24bda6accc 224 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 217 5.2E-87 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BMD_4332 736a3ab2e1491793c5174a24bda6accc 224 Pfam PF02224 Cytidylate kinase 7 220 4.9E-80 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BMD_4332 736a3ab2e1491793c5174a24bda6accc 224 SUPERFAMILY SSF52540 5 220 2.99E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4332 736a3ab2e1491793c5174a24bda6accc 224 Hamap MF_00238 Cytidylate kinase [cmk]. 5 223 33.66 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BMD_4332 736a3ab2e1491793c5174a24bda6accc 224 Gene3D G3DSA:3.40.50.300 1 223 1.4E-85 T 13-10-2018 BMD_1072 24973da5b456f6529580d03081293430 369 Pfam PF13378 Enolase C-terminal domain-like 149 355 1.2E-48 T 13-10-2018 IPR029065 Enolase C-terminal domain-like BMD_1072 24973da5b456f6529580d03081293430 369 Hamap MF_01933 o-succinylbenzoate synthase [menC]. 1 360 45.613 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 BMD_1072 24973da5b456f6529580d03081293430 369 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 125 3.0E-12 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BMD_1072 24973da5b456f6529580d03081293430 369 SUPERFAMILY SSF51604 114 363 5.11E-67 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_1072 24973da5b456f6529580d03081293430 369 SUPERFAMILY SSF54826 1 126 1.61E-30 T 13-10-2018 BMD_1072 24973da5b456f6529580d03081293430 369 TIGRFAM TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase 10 333 7.6E-117 T 13-10-2018 IPR010197 o-Succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 BMD_1072 24973da5b456f6529580d03081293430 369 Gene3D G3DSA:3.20.20.120 118 347 6.0E-134 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BMD_1072 24973da5b456f6529580d03081293430 369 SMART SM00922 143 235 1.3E-20 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BMD_1072 24973da5b456f6529580d03081293430 369 Gene3D G3DSA:3.30.390.10 8 358 6.0E-134 T 13-10-2018 IPR029017 Enolase-like, N-terminal BMD_1177 808b333b703e1e57e8764180ec940f8d 183 SUPERFAMILY SSF51306 29 182 2.35E-45 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BMD_1177 808b333b703e1e57e8764180ec940f8d 183 ProSitePatterns PS00761 Signal peptidases I signature 3. 141 154 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 BMD_1177 808b333b703e1e57e8764180ec940f8d 183 Pfam PF00717 Peptidase S24-like 36 101 6.0E-18 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BMD_1177 808b333b703e1e57e8764180ec940f8d 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 30 46 4.2E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_1177 808b333b703e1e57e8764180ec940f8d 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 136 155 4.2E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_1177 808b333b703e1e57e8764180ec940f8d 183 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 77 89 4.2E-18 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_1177 808b333b703e1e57e8764180ec940f8d 183 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 15 176 7.6E-42 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BMD_1177 808b333b703e1e57e8764180ec940f8d 183 Gene3D G3DSA:2.10.109.10 56 183 1.8E-34 T 13-10-2018 BMD_1177 808b333b703e1e57e8764180ec940f8d 183 ProSitePatterns PS00760 Signal peptidases I lysine active site. 79 91 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 BMD_2543 9eda41ed24cc3168f67a4eb905c8e8ca 47 Hamap MF_01505 Small, acid-soluble spore protein N [sspN]. 1 47 18.921 T 13-10-2018 IPR012612 Small acid-soluble spore protein, SspN GO:0030436|GO:0042601 BMD_2543 9eda41ed24cc3168f67a4eb905c8e8ca 47 Pfam PF08177 Small acid-soluble spore protein N family 1 46 3.8E-26 T 13-10-2018 IPR012612 Small acid-soluble spore protein, SspN GO:0030436|GO:0042601 BMD_0804 7c580f6c5a2418263dba9f38496f9324 329 TIGRFAM TIGR03814 Gln_ase: glutaminase A 20 329 7.0E-119 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BMD_0804 7c580f6c5a2418263dba9f38496f9324 329 Gene3D G3DSA:3.40.710.10 47 329 4.4E-118 T 13-10-2018 BMD_0804 7c580f6c5a2418263dba9f38496f9324 329 Pfam PF04960 Glutaminase 34 329 5.9E-107 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BMD_0804 7c580f6c5a2418263dba9f38496f9324 329 Gene3D G3DSA:1.10.1500.10 73 210 4.4E-118 T 13-10-2018 BMD_0804 7c580f6c5a2418263dba9f38496f9324 329 SUPERFAMILY SSF56601 15 329 3.43E-117 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_0804 7c580f6c5a2418263dba9f38496f9324 329 Hamap MF_00313 Glutaminase [glsA]. 16 329 44.003 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BMD_0937 fe75cd8d7d456c3cda02a63875451ba9 469 Pfam PF13641 Glycosyltransferase like family 2 63 327 1.9E-17 T 13-10-2018 BMD_0937 fe75cd8d7d456c3cda02a63875451ba9 469 Gene3D G3DSA:3.90.550.10 55 317 3.4E-37 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_0937 fe75cd8d7d456c3cda02a63875451ba9 469 SUPERFAMILY SSF53448 60 372 2.25E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3406 9a527e8fd9e7092a7f395b8898047f46 405 Gene3D G3DSA:3.40.50.1100 112 208 2.0E-105 T 13-10-2018 BMD_3406 9a527e8fd9e7092a7f395b8898047f46 405 SUPERFAMILY SSF53686 4 389 4.45E-86 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BMD_3406 9a527e8fd9e7092a7f395b8898047f46 405 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 103 117 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BMD_3406 9a527e8fd9e7092a7f395b8898047f46 405 Gene3D G3DSA:3.40.50.1100 61 386 2.0E-105 T 13-10-2018 BMD_3406 9a527e8fd9e7092a7f395b8898047f46 405 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 76 380 9.5E-60 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BMD_4420 3f20df5ae1f397eac9f8c88699a21cf0 331 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 16 320 5.8E-93 T 13-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BMD_4420 3f20df5ae1f397eac9f8c88699a21cf0 331 Gene3D G3DSA:1.10.287.130 263 327 5.5E-15 T 13-10-2018 BMD_4420 3f20df5ae1f397eac9f8c88699a21cf0 331 Gene3D G3DSA:3.40.50.300 50 261 1.2E-69 T 13-10-2018 BMD_4420 3f20df5ae1f397eac9f8c88699a21cf0 331 SUPERFAMILY SSF52540 2 324 5.05E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4420 3f20df5ae1f397eac9f8c88699a21cf0 331 Gene3D G3DSA:1.20.5.170 1 49 4.8E-18 T 13-10-2018 BMD_4420 3f20df5ae1f397eac9f8c88699a21cf0 331 Pfam PF03308 ArgK protein 21 290 3.8E-92 T 13-10-2018 BMD_3507 cc2672b6707c731c29d69f7bd90a4a39 297 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 16 297 1.7E-72 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 BMD_3507 cc2672b6707c731c29d69f7bd90a4a39 297 SUPERFAMILY SSF56059 3 297 6.12E-66 T 13-10-2018 BMD_3507 cc2672b6707c731c29d69f7bd90a4a39 297 Gene3D G3DSA:3.30.1490.20 1 168 1.0E-38 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BMD_3507 cc2672b6707c731c29d69f7bd90a4a39 297 Gene3D G3DSA:3.30.470.20 169 297 1.1E-34 T 13-10-2018 BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 SMART SM00448 2 112 1.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 SUPERFAMILY SSF52172 3 122 2.28E-34 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 222 1.5E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 Gene3D G3DSA:1.10.10.10 127 229 8.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 Pfam PF00072 Response regulator receiver domain 5 113 2.8E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 SUPERFAMILY SSF46894 128 222 6.24E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 Gene3D G3DSA:3.40.50.2300 3 126 8.4E-30 T 13-10-2018 BMD_3334 ddeb8ef256a77d93dea589e05a7b8634 230 SMART SM00862 148 223 4.2E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_3441 b805a0b14643f419b8aa8e3638f3a8b9 108 Gene3D G3DSA:3.30.70.100 10 101 2.0E-37 T 13-10-2018 BMD_3441 b805a0b14643f419b8aa8e3638f3a8b9 108 SUPERFAMILY SSF54909 4 103 7.15E-29 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 Gene3D G3DSA:3.40.710.10 18 278 2.0E-91 T 13-10-2018 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 SUPERFAMILY SSF56601 1 279 3.85E-81 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 279 369 2.0E-22 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 SUPERFAMILY SSF69189 271 368 1.45E-21 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 Gene3D G3DSA:2.60.410.10 279 369 1.6E-24 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 259 8.6E-86 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 142 155 1.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 62 73 1.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 115 132 1.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BMD_4380 fa1ee17e80ba7f1259db1657a2bd2460 388 SMART SM00936 279 370 7.0E-29 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BMD_2235 9d0140eeaeaf9106522754bf9c8561f4 273 Gene3D G3DSA:3.60.15.10 3 225 1.5E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2235 9d0140eeaeaf9106522754bf9c8561f4 273 SMART SM00849 18 206 3.7E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_2235 9d0140eeaeaf9106522754bf9c8561f4 273 SUPERFAMILY SSF56281 17 234 1.96E-27 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4029 79638747c818f5e32956abedeab6fa61 233 SMART SM00882 11 223 7.9E-67 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4029 79638747c818f5e32956abedeab6fa61 233 SUPERFAMILY SSF100950 9 225 3.19E-69 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_4029 79638747c818f5e32956abedeab6fa61 233 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 11 223 7.6E-65 T 13-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 BMD_4029 79638747c818f5e32956abedeab6fa61 233 Gene3D G3DSA:3.40.1080.10 8 225 3.4E-70 T 13-10-2018 BMD_4029 79638747c818f5e32956abedeab6fa61 233 Pfam PF01144 Coenzyme A transferase 12 221 3.2E-60 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 BMD_4431 90d06693bcccbc35b625da17f9adfe51 83 Pfam PF11118 Protein of unknown function (DUF2627) 3 77 1.7E-37 T 13-10-2018 IPR020138 Uncharacterised protein family YqzF BMD_4431 90d06693bcccbc35b625da17f9adfe51 83 ProDom PD058321 YQZF GSC13 TRANSMEMBRANE IG GKC13 MEMBRANE PROTEINS BH2767 RBL05544 SIMILAR 20 77 1.0E-8 T 13-10-2018 IPR020138 Uncharacterised protein family YqzF BMD_3711 d19c25eaace8f1c7898b677ffb5a80a9 91 Pfam PF04226 Transglycosylase associated protein 33 78 1.6E-10 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 BMD_1190 5db83dfc2dc7492975ac2d9a015b6ba1 148 Pfam PF13673 Acetyltransferase (GNAT) domain 38 147 7.8E-14 T 13-10-2018 IPR000182 GNAT domain BMD_1190 5db83dfc2dc7492975ac2d9a015b6ba1 148 Gene3D G3DSA:3.40.630.30 6 146 2.6E-18 T 13-10-2018 BMD_1190 5db83dfc2dc7492975ac2d9a015b6ba1 148 SUPERFAMILY SSF55729 15 143 8.35E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2122 f6f0b46ff0882425fc825b972942b662 76 Pfam PF09953 Uncharacterized protein conserved in bacteria (DUF2187) 18 74 9.4E-24 T 13-10-2018 IPR018690 Protein of unknown function DUF2187 BMD_1259 3d75d60416d0d9729e7e62f51fc414e9 233 SUPERFAMILY SSF51735 1 206 1.68E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1259 3d75d60416d0d9729e7e62f51fc414e9 233 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 112 6.9E-8 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BMD_1259 3d75d60416d0d9729e7e62f51fc414e9 233 Gene3D G3DSA:3.40.50.720 1 219 1.2E-53 T 13-10-2018 BMD_0831 3288d10972fca0148fef9b6ebcad8467 60 Pfam PF08863 YolD-like protein 1 59 2.8E-9 T 13-10-2018 IPR014962 YolD-like protein BMD_1272 095345e06e31896083b9a05503edc0f7 265 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 253 7.7E-51 T 13-10-2018 IPR000150 Cof family GO:0016787 BMD_1272 095345e06e31896083b9a05503edc0f7 265 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 256 6.1E-52 T 13-10-2018 BMD_1272 095345e06e31896083b9a05503edc0f7 265 Gene3D G3DSA:3.30.1240.10 82 188 2.9E-57 T 13-10-2018 BMD_1272 095345e06e31896083b9a05503edc0f7 265 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 232 8.7E-30 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BMD_1272 095345e06e31896083b9a05503edc0f7 265 Gene3D G3DSA:3.40.50.1000 5 252 2.9E-57 T 13-10-2018 IPR023214 HAD superfamily BMD_1272 095345e06e31896083b9a05503edc0f7 265 SUPERFAMILY SSF56784 1 252 1.42E-58 T 13-10-2018 IPR036412 HAD-like superfamily BMD_1176 3c19db554e8a25660926d8f954b99c46 148 Pfam PF10710 Protein of unknown function (DUF2512) 1 138 4.4E-40 T 13-10-2018 IPR019649 Protein of unknown function DUF2512 BMD_4023 98aa31008759a559b60104df990194e4 281 ProSitePatterns PS00770 Aminotransferases class-IV signature. 177 206 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 BMD_4023 98aa31008759a559b60104df990194e4 281 TIGRFAM TIGR01121 D_amino_aminoT: D-amino-acid transaminase 8 256 3.5E-85 T 13-10-2018 IPR005784 D-amino acid aminotransferase GO:0008483|GO:0030170|GO:0046416 KEGG: 00310+2.6.1.21|KEGG: 00330+2.6.1.21|KEGG: 00360+2.6.1.21|KEGG: 00472+2.6.1.21|KEGG: 00473+2.6.1.21 BMD_4023 98aa31008759a559b60104df990194e4 281 Gene3D G3DSA:3.20.10.10 119 277 2.7E-52 T 13-10-2018 BMD_4023 98aa31008759a559b60104df990194e4 281 SUPERFAMILY SSF56752 4 270 1.57E-73 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 BMD_4023 98aa31008759a559b60104df990194e4 281 Pfam PF01063 Amino-transferase class IV 30 251 2.2E-54 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 BMD_4023 98aa31008759a559b60104df990194e4 281 Gene3D G3DSA:3.30.470.10 1 115 1.9E-33 T 13-10-2018 BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 Hamap MF_00798 Transcription attenuation protein MtrB [mtrB]. 1 73 28.979 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 Pfam PF02081 Tryptophan RNA-binding attenuator protein 8 73 6.2E-41 T 13-10-2018 IPR023558 Tryptophan RNA-binding attenuator protein domain BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 Gene3D G3DSA:2.60.40.50 1 76 3.1E-42 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 9 26 4.0E-36 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 26 42 4.0E-36 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 42 58 4.0E-36 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 PRINTS PR00687 Tryptophan RNA-binding attenuator protein signature 58 74 4.0E-36 T 13-10-2018 IPR000824 Transcription attenuation protein MtrB GO:0003723|GO:0006353|GO:0006355 BMD_4318 1afd65f4fa99e13568186763f40a4dda 76 SUPERFAMILY SSF51219 8 74 1.15E-35 T 13-10-2018 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily BMD_0652 53d27587c07a2e5f3a6f42a646d964a8 73 Pfam PF10676 Spore germination protein gerPA/gerPF 1 72 3.8E-29 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF BMD_5009 a1d532557b36728ed671ba4acac1b0a1 82 Pfam PF02525 Flavodoxin-like fold 2 74 8.3E-11 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_5009 a1d532557b36728ed671ba4acac1b0a1 82 SUPERFAMILY SSF52218 1 77 9.77E-12 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_5009 a1d532557b36728ed671ba4acac1b0a1 82 Gene3D G3DSA:3.40.50.360 1 79 1.7E-16 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2229 374fdac1c2d14519df429addf4895e33 192 Pfam PF09335 SNARE associated Golgi protein 30 154 5.2E-14 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_3450 16976552847089290367a8aea2ff6ab7 159 Pfam PF11188 Protein of unknown function (DUF2975) 43 159 1.1E-31 T 13-10-2018 IPR021354 Protein of unknown function DUF2975 BMD_1180 63cd5277595c18fa7b61feb7bdd0956e 135 Pfam PF07485 Domain of Unknown Function (DUF1259) 12 131 9.2E-34 T 13-10-2018 IPR011094 Uncharacterised protein family, LppY/LpqO BMD_1446 ce82dcb6c159e1e6138201bb221d5441 133 Pfam PF13456 Reverse transcriptase-like 8 125 3.2E-19 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 BMD_1446 ce82dcb6c159e1e6138201bb221d5441 133 SUPERFAMILY SSF53098 1 123 5.69E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_1446 ce82dcb6c159e1e6138201bb221d5441 133 Gene3D G3DSA:3.30.420.10 2 132 7.0E-33 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_4742 2c3974902e6a345c96a984c6db1295ba 475 Pfam PF07261 Replication initiation and membrane attachment 332 397 1.5E-12 T 13-10-2018 IPR006343 DnaD domain BMD_3123 96df596e262574d205a353a549561fdc 60 Pfam PF08863 YolD-like protein 5 59 2.8E-8 T 13-10-2018 IPR014962 YolD-like protein BMD_4291 0c82750857d8f7fc3aa6c864bb5e656f 148 SUPERFAMILY SSF158622 4 126 8.5E-32 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily BMD_4291 0c82750857d8f7fc3aa6c864bb5e656f 148 Gene3D G3DSA:1.20.1500.10 3 126 8.9E-28 T 13-10-2018 IPR023378 YheA/YmcA-like domain superfamily BMD_4291 0c82750857d8f7fc3aa6c864bb5e656f 148 Pfam PF06133 Control of competence regulator ComK, YlbF/YmcA 12 116 2.4E-19 T 13-10-2018 IPR010368 Control of competence regulator ComK, YlbF/YmcA BMD_2289 ca84015e1734367fb4c0604589253b62 223 Gene3D G3DSA:3.40.109.10 1 223 4.4E-62 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_2289 ca84015e1734367fb4c0604589253b62 223 Pfam PF00881 Nitroreductase family 16 201 2.8E-26 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_2289 ca84015e1734367fb4c0604589253b62 223 SUPERFAMILY SSF55469 9 221 3.93E-56 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_0799 d2138f063ca94f635b0af712d2056e44 100 TIGRFAM TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein 2 94 9.0E-34 T 13-10-2018 IPR009662 Malonate decarboxylase delta subunit BMD_0799 d2138f063ca94f635b0af712d2056e44 100 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 16 93 1.2E-22 T 13-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein BMD_0799 d2138f063ca94f635b0af712d2056e44 100 Hamap MF_00710 Malonate decarboxylase acyl carrier protein [mdcC]. 1 99 37.42 T 13-10-2018 IPR009662 Malonate decarboxylase delta subunit BMD_0799 d2138f063ca94f635b0af712d2056e44 100 ProDom PD015450 MALONATE DECARBOXYLASE SUBUNIT DELTA ACYL CARRIER DECARBOXYLASE PLASMID DIRECT SEQUENCING 1 93 4.0E-27 T 13-10-2018 IPR009662 Malonate decarboxylase delta subunit BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 9 163 8.9E-73 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 75 4.8E-33 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 37.108 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 Gene3D G3DSA:3.30.230.10 74 166 4.7E-36 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 1.8E-29 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 SUPERFAMILY SSF54768 8 76 1.46E-25 T 13-10-2018 BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 SUPERFAMILY SSF54211 80 159 1.29E-25 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BMD_0151 dd18084d9792112a166b82e7d56b0e77 166 Gene3D G3DSA:3.30.160.20 1 73 7.0E-36 T 13-10-2018 BMD_0514 eaef4121faec8a21057f45fe34dad18d 433 TIGRFAM TIGR00784 citMHS: citrate transporter 1 433 5.1E-163 T 13-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 BMD_0514 eaef4121faec8a21057f45fe34dad18d 433 Pfam PF03600 Citrate transporter 14 376 1.5E-46 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BMD_3909 bb4c4e5e1414ac60c66771901d4aad31 314 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 88 231 4.7E-33 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_3909 bb4c4e5e1414ac60c66771901d4aad31 314 Gene3D G3DSA:1.10.260.150 67 314 5.5E-78 T 13-10-2018 BMD_3909 bb4c4e5e1414ac60c66771901d4aad31 314 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 88 231 2.8E-48 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_0476 26dd9377a872f20c5b2f0656eeea4ea4 165 SUPERFAMILY SSF55729 1 134 4.53E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0476 26dd9377a872f20c5b2f0656eeea4ea4 165 Gene3D G3DSA:3.40.630.30 1 156 3.7E-15 T 13-10-2018 BMD_0476 26dd9377a872f20c5b2f0656eeea4ea4 165 Pfam PF13527 Acetyltransferase (GNAT) domain 3 128 7.7E-10 T 13-10-2018 BMD_1703 708f41e77909c4dcbfcb011261fadecb 314 SUPERFAMILY SSF161098 91 290 1.83E-18 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1703 708f41e77909c4dcbfcb011261fadecb 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 307 7.5E-45 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1703 708f41e77909c4dcbfcb011261fadecb 314 TIGRFAM TIGR02789 nickel_nikB: nickel ABC transporter, permease subunit NikB 1 314 5.2E-156 T 13-10-2018 IPR014156 Nickel ABC transporter, permease subunit NikB GO:0015099|GO:0035444 BMD_1703 708f41e77909c4dcbfcb011261fadecb 314 Gene3D G3DSA:1.10.3720.10 81 310 7.7E-25 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0419 6d9a4843300b48335d933abacfd1f877 288 Gene3D G3DSA:3.30.460.10 1 114 4.4E-44 T 13-10-2018 BMD_0419 6d9a4843300b48335d933abacfd1f877 288 ProDom PD128250 YGXA BH0953 1 277 2.0E-90 T 13-10-2018 BMD_0419 6d9a4843300b48335d933abacfd1f877 288 Gene3D G3DSA:1.20.120.330 115 232 1.9E-47 T 13-10-2018 BMD_0419 6d9a4843300b48335d933abacfd1f877 288 Pfam PF14540 Nucleotidyltransferase-like 1 118 6.5E-46 T 13-10-2018 IPR029348 Nucleotidyltransferase-like domain BMD_2219 ccbe4086fc7c0ba620dce8e12cc4a089 307 Pfam PF01040 UbiA prenyltransferase family 35 263 7.9E-36 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BMD_2219 ccbe4086fc7c0ba620dce8e12cc4a089 307 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 27 272 7.1E-36 T 13-10-2018 BMD_2219 ccbe4086fc7c0ba620dce8e12cc4a089 307 PIRSF PIRSF005355 11 305 5.2E-84 T 13-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 BMD_2219 ccbe4086fc7c0ba620dce8e12cc4a089 307 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 18 300 18.785 T 13-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BMD_2166 e006c7993fafbed5917017e6d91d711e 258 Gene3D G3DSA:3.40.50.720 1 258 3.2E-81 T 13-10-2018 BMD_2166 e006c7993fafbed5917017e6d91d711e 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 256 9.0E-66 T 13-10-2018 BMD_2166 e006c7993fafbed5917017e6d91d711e 258 SUPERFAMILY SSF51735 3 257 7.55E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.9E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 5 258 1.7E-110 T 13-10-2018 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 2.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.9E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2166 e006c7993fafbed5917017e6d91d711e 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BMD_2053 16145cc741e90f0a7af4d2306931200f 356 Pfam PF13039 Protein of unknown function (DUF3900) 2 254 3.8E-131 T 13-10-2018 IPR025006 Protein of unknown function DUF3900 BMD_2053 16145cc741e90f0a7af4d2306931200f 356 Pfam PF13037 Domain of unknown function (DUF3898) 261 349 1.8E-40 T 13-10-2018 IPR025012 Domain of unknown function DUF3898 BMD_2963 9c01cebba0a73c123dac224dace04e98 352 Gene3D G3DSA:1.10.3470.10 9 350 2.5E-100 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_2963 9c01cebba0a73c123dac224dace04e98 352 Pfam PF01032 FecCD transport family 24 343 2.7E-92 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_2963 9c01cebba0a73c123dac224dace04e98 352 SUPERFAMILY SSF81345 7 343 4.18E-78 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_1744 ff308dc81660762efe1c5dd5ef0a4be7 148 SUPERFAMILY SSF46785 14 146 2.6E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1744 ff308dc81660762efe1c5dd5ef0a4be7 148 SMART SM00347 26 129 3.7E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_1744 ff308dc81660762efe1c5dd5ef0a4be7 148 Gene3D G3DSA:1.10.10.10 1 145 8.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1744 ff308dc81660762efe1c5dd5ef0a4be7 148 Pfam PF01047 MarR family 34 91 6.8E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 75 83 1.7E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 93 1.7E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 1.7E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 SUPERFAMILY SSF81330 10 119 1.83E-35 T 13-10-2018 IPR036019 Gated mechanosensitive channel BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 Gene3D G3DSA:1.10.1200.120 1 126 7.3E-42 T 13-10-2018 IPR036019 Gated mechanosensitive channel BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 124 24.406 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 123 3.7E-45 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 123 2.9E-49 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BMD_0201 fc2267c7dbc69b2aaa651c0412f7bdff 131 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 11 24 - T 13-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site BMD_0299 8082d4d6339e5b564e7eb2f96b621edb 271 Gene3D G3DSA:3.30.70.120 183 257 3.7E-22 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_0299 8082d4d6339e5b564e7eb2f96b621edb 271 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 5 204 3.8E-63 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_0299 8082d4d6339e5b564e7eb2f96b621edb 271 PIRSF PIRSF006483 1 271 1.1E-93 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_0299 8082d4d6339e5b564e7eb2f96b621edb 271 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 210 264 3.1E-23 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_3893 12020bd1534d73a3229b8935b32b2220 166 SUPERFAMILY SSF48452 11 153 5.88E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3893 12020bd1534d73a3229b8935b32b2220 166 Gene3D G3DSA:1.25.40.10 7 163 3.5E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3438 971b9ff9be0d9c527a075f301e2f2f8e 417 Gene3D G3DSA:1.20.1440.30 142 283 5.7E-40 T 13-10-2018 BMD_3438 971b9ff9be0d9c527a075f301e2f2f8e 417 Gene3D G3DSA:3.30.1870.10 75 141 5.7E-40 T 13-10-2018 BMD_3438 971b9ff9be0d9c527a075f301e2f2f8e 417 Pfam PF05139 Erythromycin esterase 73 400 1.6E-32 T 13-10-2018 IPR007815 Erythromycin esterase GO:0046677 BMD_3438 971b9ff9be0d9c527a075f301e2f2f8e 417 Gene3D G3DSA:3.40.1660.10 17 383 5.7E-40 T 13-10-2018 BMD_3438 971b9ff9be0d9c527a075f301e2f2f8e 417 SUPERFAMILY SSF159501 14 411 1.88E-57 T 13-10-2018 BMD_4759 a07d8e4311105a635d26df3b1a488a09 153 Pfam PF04186 FxsA cytoplasmic membrane protein 31 136 3.0E-33 T 13-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 Gene3D G3DSA:1.10.287.100 99 150 1.2E-11 T 13-10-2018 BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 Gene3D G3DSA:1.10.10.10 35 98 1.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 SUPERFAMILY SSF46785 14 139 2.62E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 SMART SM00347 28 128 3.3E-25 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 Pfam PF01047 MarR family 35 93 5.8E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 3.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 3.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 3.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_3126 dbb957ff98d136b97a9ecf040f32201a 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 3.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2959 afcd4bb973ebdb2bd483404b5cf6e75a 167 SUPERFAMILY SSF49764 79 163 6.63E-7 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_2959 afcd4bb973ebdb2bd483404b5cf6e75a 167 Gene3D G3DSA:2.60.40.790 71 154 1.5E-7 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_0686 486102aed0c6ba38b944888118f2285e 59 Pfam PF14168 YjzC-like protein 1 55 1.5E-28 T 13-10-2018 IPR025549 YjzC-like protein BMD_3418 617be9b5d9707c663a6414651bbab86f 462 SUPERFAMILY SSF103473 27 445 6.54E-36 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3418 617be9b5d9707c663a6414651bbab86f 462 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 75 102 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 BMD_3418 617be9b5d9707c663a6414651bbab86f 462 Pfam PF13347 MFS/sugar transport protein 26 445 3.3E-103 T 13-10-2018 BMD_3418 617be9b5d9707c663a6414651bbab86f 462 Gene3D G3DSA:1.20.1250.20 244 446 1.7E-11 T 13-10-2018 BMD_3418 617be9b5d9707c663a6414651bbab86f 462 Gene3D G3DSA:1.20.1250.20 27 221 6.0E-9 T 13-10-2018 BMD_3418 617be9b5d9707c663a6414651bbab86f 462 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 24 458 1.5E-144 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 BMD_4731 3d8919350aeba6b89e9891ee5a6862c6 68 TIGRFAM TIGR03092 SASP_sspI: small, acid-soluble spore protein I 4 68 5.8E-32 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 BMD_4731 3d8919350aeba6b89e9891ee5a6862c6 68 Pfam PF14098 Small, acid-soluble spore protein I 3 67 1.7E-29 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 BMD_4731 3d8919350aeba6b89e9891ee5a6862c6 68 Hamap MF_00669 Small, acid-soluble spore protein I [sspI]. 1 68 21.79 T 13-10-2018 IPR017525 Small, acid-soluble spore protein I GO:0030436 BMD_4462 05e6dea4bed028c85315468618b491c3 318 Pfam PF07136 Protein of unknown function (DUF1385) 56 303 2.6E-79 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 BMD_4462 05e6dea4bed028c85315468618b491c3 318 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 56 300 2.0E-101 T 13-10-2018 IPR010787 Protein of unknown function DUF1385 BMD_0470 8e52c0f81a831e9566757518b0ba75b0 337 SUPERFAMILY SSF54001 214 336 1.08E-39 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_0470 8e52c0f81a831e9566757518b0ba75b0 337 Pfam PF00877 NlpC/P60 family 229 334 2.3E-25 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_0470 8e52c0f81a831e9566757518b0ba75b0 337 Gene3D G3DSA:2.30.30.40 28 143 7.3E-42 T 13-10-2018 BMD_0470 8e52c0f81a831e9566757518b0ba75b0 337 Gene3D G3DSA:3.90.1720.10 214 337 1.3E-39 T 13-10-2018 BMD_0470 8e52c0f81a831e9566757518b0ba75b0 337 Gene3D G3DSA:2.30.30.40 144 211 9.1E-32 T 13-10-2018 BMD_3933 66da1e6626b906090cba0c1930cae6a5 375 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 9 340 2.3E-91 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BMD_3933 66da1e6626b906090cba0c1930cae6a5 375 SUPERFAMILY SSF51395 4 345 2.62E-96 T 13-10-2018 BMD_3933 66da1e6626b906090cba0c1930cae6a5 375 Gene3D G3DSA:3.20.20.70 4 370 7.3E-113 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3170 324a286d39b6eaf26fa88b5ba375d35a 547 PIRSF PIRSF006060 1 455 3.3E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3170 324a286d39b6eaf26fa88b5ba375d35a 547 PIRSF PIRSF006060 443 536 0.18 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3170 324a286d39b6eaf26fa88b5ba375d35a 547 Pfam PF13520 Amino acid permease 9 420 5.2E-48 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_3170 324a286d39b6eaf26fa88b5ba375d35a 547 Gene3D G3DSA:1.20.1740.10 1 457 7.6E-78 T 13-10-2018 BMD_2691 a49a527fb4fa02f01f5655b79064e4d1 326 SUPERFAMILY SSF103473 19 320 5.49E-5 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2691 a49a527fb4fa02f01f5655b79064e4d1 326 Pfam PF12679 ABC-2 family transporter protein 4 325 6.4E-24 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 BMD_0521 0952b2632ee89b358f14e99f6c6dba23 176 Gene3D G3DSA:3.10.450.420 23 176 7.8E-53 T 13-10-2018 BMD_0521 0952b2632ee89b358f14e99f6c6dba23 176 Pfam PF16800 IseA DL-endopeptidase inhibitor 27 174 6.2E-52 T 13-10-2018 IPR031841 DL-endopeptidase inhibitor IseA BMD_1753 81f74c99f6d05b5c237fc46c7f5c788f 109 ProDom PD092006 MEMBRANE YWOB TRANSMEMBRANE 3 81 2.0E-19 T 13-10-2018 IPR020218 Uncharacterised protein family, YwoB, transmembrane BMD_0275 7d26ce2dd52b049c484250f9e382aebd 83 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 2 79 4.9E-31 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0275 7d26ce2dd52b049c484250f9e382aebd 83 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 77 22.258 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0275 7d26ce2dd52b049c484250f9e382aebd 83 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 3 77 1.3E-31 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0275 7d26ce2dd52b049c484250f9e382aebd 83 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 10 75 9.0E-23 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 BMD_0275 7d26ce2dd52b049c484250f9e382aebd 83 Gene3D G3DSA:3.30.1280.10 1 83 7.0E-34 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_0275 7d26ce2dd52b049c484250f9e382aebd 83 SUPERFAMILY SSF82697 2 77 1.52E-28 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BMD_2639 15d528e1212aebff9b0cf65533a8e465 477 Pfam PF02447 GntP family permease 52 467 5.9E-8 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_2882 8b93bfbe02ed220ee35df0152e1ab97f 198 Gene3D G3DSA:1.10.150.240 13 75 5.4E-34 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_2882 8b93bfbe02ed220ee35df0152e1ab97f 198 Pfam PF13419 Haloacid dehalogenase-like hydrolase 3 165 3.2E-21 T 13-10-2018 BMD_2882 8b93bfbe02ed220ee35df0152e1ab97f 198 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 3 160 1.3E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_2882 8b93bfbe02ed220ee35df0152e1ab97f 198 Gene3D G3DSA:3.40.50.1000 3 161 5.4E-34 T 13-10-2018 IPR023214 HAD superfamily BMD_2882 8b93bfbe02ed220ee35df0152e1ab97f 198 SUPERFAMILY SSF56784 3 183 1.14E-28 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3343 5100e73b4e129aaf7364f62bedb07a55 74 Gene3D G3DSA:3.30.110.40 1 74 2.3E-30 T 13-10-2018 IPR036868 TusA-like domain superfamily BMD_3343 5100e73b4e129aaf7364f62bedb07a55 74 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 7 31 - T 13-10-2018 IPR001455 TusA-like domain BMD_3343 5100e73b4e129aaf7364f62bedb07a55 74 SUPERFAMILY SSF64307 4 74 2.62E-25 T 13-10-2018 IPR036868 TusA-like domain superfamily BMD_3343 5100e73b4e129aaf7364f62bedb07a55 74 Pfam PF01206 Sulfurtransferase TusA 5 73 6.8E-25 T 13-10-2018 IPR001455 TusA-like domain BMD_0743 770d7597402e1d71e1433dbcc6a36a14 772 Gene3D G3DSA:1.10.10.160 256 331 2.3E-84 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily BMD_0743 770d7597402e1d71e1433dbcc6a36a14 772 Pfam PF00580 UvrD/REP helicase N-terminal domain 151 412 8.8E-64 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BMD_0743 770d7597402e1d71e1433dbcc6a36a14 772 Gene3D G3DSA:3.40.50.300 150 414 2.3E-84 T 13-10-2018 BMD_0743 770d7597402e1d71e1433dbcc6a36a14 772 Pfam PF13361 UvrD-like helicase C-terminal domain 418 750 1.6E-42 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BMD_0743 770d7597402e1d71e1433dbcc6a36a14 772 SUPERFAMILY SSF52540 145 769 2.1E-130 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0743 770d7597402e1d71e1433dbcc6a36a14 772 Gene3D G3DSA:1.10.486.10 524 671 1.4E-74 T 13-10-2018 BMD_0743 770d7597402e1d71e1433dbcc6a36a14 772 Gene3D G3DSA:3.40.50.300 422 766 1.4E-74 T 13-10-2018 BMD_2867 267bfd2ccefebbccc40f1de255ebb8b3 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 304 1.3E-41 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2867 267bfd2ccefebbccc40f1de255ebb8b3 313 SUPERFAMILY SSF161098 93 291 2.22E-22 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2867 267bfd2ccefebbccc40f1de255ebb8b3 313 Gene3D G3DSA:1.10.3720.10 87 301 5.6E-28 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3944 d066351eca2fdfd6d90ac31f242fa835 220 Pfam PF02308 MgtC family 9 134 1.9E-37 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_3944 d066351eca2fdfd6d90ac31f242fa835 220 PRINTS PR01837 MgtC/SapB protein signature 65 87 6.8E-46 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_3944 d066351eca2fdfd6d90ac31f242fa835 220 PRINTS PR01837 MgtC/SapB protein signature 12 31 6.8E-46 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_3944 d066351eca2fdfd6d90ac31f242fa835 220 PRINTS PR01837 MgtC/SapB protein signature 92 116 6.8E-46 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_3944 d066351eca2fdfd6d90ac31f242fa835 220 PRINTS PR01837 MgtC/SapB protein signature 31 49 6.8E-46 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BMD_1009 01c79ddbd8f13532a565fd78ed098f82 149 Pfam PF12638 Staygreen protein 4 146 2.4E-42 T 13-10-2018 IPR024438 Staygreen protein BMD_1285 5f8b0bf883561490089067225f1cf8cb 228 Pfam PF04172 LrgB-like family 12 223 6.0E-71 T 13-10-2018 IPR007300 CidB/LrgB family BMD_4871 6754d3c358e10c1f2b84026536223376 347 SUPERFAMILY SSF47240 21 347 6.45E-82 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_4871 6754d3c358e10c1f2b84026536223376 347 Gene3D G3DSA:1.10.620.20 24 314 1.5E-87 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 BMD_4871 6754d3c358e10c1f2b84026536223376 347 PIRSF PIRSF000355 1 347 2.4E-118 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_4871 6754d3c358e10c1f2b84026536223376 347 Pfam PF00268 Ribonucleotide reductase, small chain 31 304 1.0E-67 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BMD_1640 e44ae6e5bb4ebc1cca4420e5d94faf1a 263 Pfam PF01636 Phosphotransferase enzyme family 119 174 2.8E-11 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase BMD_1640 e44ae6e5bb4ebc1cca4420e5d94faf1a 263 SUPERFAMILY SSF56112 8 262 2.04E-24 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_1640 e44ae6e5bb4ebc1cca4420e5d94faf1a 263 Gene3D G3DSA:3.90.1200.10 74 220 2.9E-9 T 13-10-2018 BMD_2294 bda6d0db7fe98db8658d437fcf936a8c 435 Pfam PF03600 Citrate transporter 13 380 4.5E-48 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BMD_2294 bda6d0db7fe98db8658d437fcf936a8c 435 TIGRFAM TIGR00784 citMHS: citrate transporter 2 435 7.0E-195 T 13-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 BMD_4783 3c56c9db6e11a515465d621fdf0661a3 232 Pfam PF11167 Protein of unknown function (DUF2953) 132 179 2.0E-17 T 13-10-2018 IPR021338 Protein of unknown function DUF2953 BMD_4485 074d221f8282680aeec9610ef1eaee76 58 Pfam PF10958 Protein of unknown function (DUF2759) 6 55 5.2E-24 T 13-10-2018 IPR024490 Protein of unknown function DUF2759 BMD_4485 074d221f8282680aeec9610ef1eaee76 58 ProDom PD052097 RELATED ALKALIPHILY YQGW MEMBRANE TRANSMEMBRANE SPANNING 1 54 4.0E-11 T 13-10-2018 IPR024490 Protein of unknown function DUF2759 BMD_5129 23b0de8345a588f793956c0b1a8f47f7 340 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 69 327 1.7E-76 T 13-10-2018 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 BMD_5129 23b0de8345a588f793956c0b1a8f47f7 340 Pfam PF08486 Stage II sporulation protein 64 168 1.1E-26 T 13-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal BMD_5129 23b0de8345a588f793956c0b1a8f47f7 340 TIGRFAM TIGR02870 spore_II_D: stage II sporulation protein D 7 327 2.9E-129 T 13-10-2018 IPR014225 Sporulation stage II, protein D firmicutes BMD_4940 4979ead921513094643932f99200c548 126 Gene3D G3DSA:2.30.30.430 1 125 2.5E-50 T 13-10-2018 IPR038080 Kinase associated protein B superfamily BMD_4940 4979ead921513094643932f99200c548 126 Pfam PF08810 Kinase associated protein B 13 123 4.5E-45 T 13-10-2018 IPR014916 Kinase associated protein B BMD_4940 4979ead921513094643932f99200c548 126 SUPERFAMILY SSF141251 2 124 4.18E-48 T 13-10-2018 IPR038080 Kinase associated protein B superfamily BMD_4940 4979ead921513094643932f99200c548 126 SMART SM01298 13 125 9.0E-57 T 13-10-2018 IPR014916 Kinase associated protein B BMD_3547 1808a33622e47967a60f4d90358544bd 337 Pfam PF02016 LD-carboxypeptidase 13 323 3.3E-68 T 13-10-2018 IPR003507 Peptidase family S66 BMD_3547 1808a33622e47967a60f4d90358544bd 337 Gene3D G3DSA:3.40.50.10740 5 159 1.7E-32 T 13-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal BMD_3547 1808a33622e47967a60f4d90358544bd 337 PIRSF PIRSF028757 1 336 5.8E-61 T 13-10-2018 IPR003507 Peptidase family S66 BMD_3547 1808a33622e47967a60f4d90358544bd 337 Gene3D G3DSA:3.50.30.60 162 335 5.2E-35 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily BMD_3547 1808a33622e47967a60f4d90358544bd 337 SUPERFAMILY SSF141986 172 328 2.62E-29 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily BMD_3547 1808a33622e47967a60f4d90358544bd 337 SUPERFAMILY SSF52317 1 162 1.65E-36 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_4973 71dde19ac49ea067220c6379b74553a0 250 PIRSF PIRSF021383 1 248 6.0E-74 T 13-10-2018 IPR014197 Sporulation protein YunB BMD_4973 71dde19ac49ea067220c6379b74553a0 250 TIGRFAM TIGR02832 spo_yunB: sporulation protein YunB 14 236 4.7E-57 T 13-10-2018 IPR014197 Sporulation protein YunB BMD_4973 71dde19ac49ea067220c6379b74553a0 250 Pfam PF09560 Sporulation protein YunB (Spo_YunB) 144 233 1.3E-30 T 13-10-2018 IPR014197 Sporulation protein YunB BMD_4052 f49b7ded4bb696d9ee1af4475a6e2bc1 584 Pfam PF04183 IucA / IucC family 136 370 3.0E-61 T 13-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 BMD_4052 f49b7ded4bb696d9ee1af4475a6e2bc1 584 Gene3D G3DSA:1.10.510.40 359 555 1.5E-14 T 13-10-2018 BMD_4052 f49b7ded4bb696d9ee1af4475a6e2bc1 584 Pfam PF06276 Ferric iron reductase FhuF-like transporter 401 559 5.3E-36 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain BMD_1458 73a4ae9a2573dc0ab4298c17ba3c31bd 312 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 34 86 8.8E-20 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BMD_1458 73a4ae9a2573dc0ab4298c17ba3c31bd 312 SUPERFAMILY SSF161098 104 311 1.44E-26 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1458 73a4ae9a2573dc0ab4298c17ba3c31bd 312 Gene3D G3DSA:1.10.3720.10 99 312 1.0E-20 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1458 73a4ae9a2573dc0ab4298c17ba3c31bd 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 127 312 2.6E-31 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_5177 c7a2469b49bf48cb70edfc1d6a7bbd5f 292 Pfam PF00491 Arginase family 23 285 8.0E-79 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_5177 c7a2469b49bf48cb70edfc1d6a7bbd5f 292 SUPERFAMILY SSF52768 12 290 1.35E-84 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily BMD_5177 c7a2469b49bf48cb70edfc1d6a7bbd5f 292 ProSitePatterns PS01053 Arginase family signature. 214 235 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 BMD_5177 c7a2469b49bf48cb70edfc1d6a7bbd5f 292 Gene3D G3DSA:3.40.800.10 17 292 1.7E-94 T 13-10-2018 BMD_5177 c7a2469b49bf48cb70edfc1d6a7bbd5f 292 TIGRFAM TIGR01230 agmatinase: agmatinase 11 286 1.5E-117 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 BMD_5177 c7a2469b49bf48cb70edfc1d6a7bbd5f 292 PIRSF PIRSF036979 1 292 7.4E-98 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 BMD_1052 69183b6ae62107817809abcc67ad54eb 104 SUPERFAMILY SSF46785 2 103 1.25E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1052 69183b6ae62107817809abcc67ad54eb 104 Gene3D G3DSA:1.10.10.10 1 104 3.6E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1052 69183b6ae62107817809abcc67ad54eb 104 Pfam PF01638 HxlR-like helix-turn-helix 17 103 1.8E-30 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_4733 de23fc80e9a31e6ec080e2135c156b9f 162 PIRSF PIRSF030140 1 162 8.2E-57 T 13-10-2018 IPR016947 Uncharacterised phage-associated protein UCP030140 BMD_4733 de23fc80e9a31e6ec080e2135c156b9f 162 SUPERFAMILY SSF101386 2 162 1.37E-40 T 13-10-2018 BMD_4733 de23fc80e9a31e6ec080e2135c156b9f 162 Pfam PF08761 dUTPase 2 162 3.2E-50 T 13-10-2018 IPR014871 dUTPase/dCTP pyrophosphatase KEGG: 00240+3.6.1.12 BMD_4733 de23fc80e9a31e6ec080e2135c156b9f 162 Gene3D G3DSA:1.10.4010.10 1 162 6.6E-16 T 13-10-2018 BMD_1147 327851dd7eba61109f8e3ecde87198d2 377 Pfam PF09860 Uncharacterized protein conserved in bacteria (DUF2087) 179 246 2.3E-24 T 13-10-2018 IPR018656 Domain of unknown function DUF2087 BMD_1147 327851dd7eba61109f8e3ecde87198d2 377 SMART SM00465 273 373 0.0012 T 13-10-2018 IPR000305 GIY-YIG endonuclease BMD_1147 327851dd7eba61109f8e3ecde87198d2 377 SUPERFAMILY SSF82771 274 362 8.37E-11 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_1147 327851dd7eba61109f8e3ecde87198d2 377 Gene3D G3DSA:3.40.1440.10 272 373 1.0E-19 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 BMD_1147 327851dd7eba61109f8e3ecde87198d2 377 Pfam PF01541 GIY-YIG catalytic domain 274 361 1.4E-7 T 13-10-2018 IPR000305 GIY-YIG endonuclease BMD_0853 799997d1cc151c23f7cf848d388062a6 529 SMART SM00387 422 529 2.8E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0853 799997d1cc151c23f7cf848d388062a6 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 489 4.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0853 799997d1cc151c23f7cf848d388062a6 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 514 527 4.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0853 799997d1cc151c23f7cf848d388062a6 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 475 4.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0853 799997d1cc151c23f7cf848d388062a6 529 PRINTS PR00344 Bacterial sensor protein C-terminal signature 490 508 4.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BMD_0853 799997d1cc151c23f7cf848d388062a6 529 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 426 528 6.7E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_0853 799997d1cc151c23f7cf848d388062a6 529 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 325 378 6.6E-10 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain BMD_0853 799997d1cc151c23f7cf848d388062a6 529 Gene3D G3DSA:3.30.565.10 385 529 1.2E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0853 799997d1cc151c23f7cf848d388062a6 529 SMART SM00091 218 284 2.9E-5 T 13-10-2018 IPR000014 PAS domain BMD_0853 799997d1cc151c23f7cf848d388062a6 529 Pfam PF17203 Single cache domain 3 41 172 2.8E-12 T 13-10-2018 IPR033463 Single cache domain 3 BMD_0853 799997d1cc151c23f7cf848d388062a6 529 SUPERFAMILY SSF55785 218 314 3.14E-8 T 13-10-2018 IPR035965 PAS domain superfamily BMD_0853 799997d1cc151c23f7cf848d388062a6 529 SUPERFAMILY SSF55890 329 377 2.22E-9 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 BMD_0853 799997d1cc151c23f7cf848d388062a6 529 SUPERFAMILY SSF55874 400 527 5.5E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_0853 799997d1cc151c23f7cf848d388062a6 529 SUPERFAMILY SSF103190 42 172 1.73E-21 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BMD_0853 799997d1cc151c23f7cf848d388062a6 529 Gene3D G3DSA:3.30.450.20 35 168 9.8E-27 T 13-10-2018 BMD_0853 799997d1cc151c23f7cf848d388062a6 529 Gene3D G3DSA:3.30.450.20 204 317 4.1E-25 T 13-10-2018 BMD_4608 fefc75ff86f4b34bcde451367dad3308 309 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 291 6.2E-33 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_4608 fefc75ff86f4b34bcde451367dad3308 309 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 11 288 1.6E-77 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 BMD_4608 fefc75ff86f4b34bcde451367dad3308 309 Gene3D G3DSA:1.10.3720.10 58 291 1.1E-30 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4608 fefc75ff86f4b34bcde451367dad3308 309 SUPERFAMILY SSF161098 20 278 1.83E-38 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2785 b07e6eff4d0e27d687e2be09dccf9325 403 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 11 399 5.1E-99 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_2785 b07e6eff4d0e27d687e2be09dccf9325 403 Gene3D G3DSA:3.30.300.210 246 400 2.0E-44 T 13-10-2018 IPR038501 Spore germination GerAC superfamily BMD_2785 b07e6eff4d0e27d687e2be09dccf9325 403 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 230 397 3.3E-36 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1957 d31ddb07624804b9140c71943c1e3171 189 Pfam PF01923 Cobalamin adenosyltransferase 3 165 5.1E-56 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BMD_1957 d31ddb07624804b9140c71943c1e3171 189 SUPERFAMILY SSF89028 1 178 2.94E-62 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BMD_1957 d31ddb07624804b9140c71943c1e3171 189 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 177 4.5E-64 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BMD_1957 d31ddb07624804b9140c71943c1e3171 189 Gene3D G3DSA:1.20.1200.10 12 189 3.7E-65 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BMD_1957 d31ddb07624804b9140c71943c1e3171 189 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 179 6.0E-60 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BMD_1222 8d178c36f48cc4d82a24174cfdcf7760 506 SUPERFAMILY SSF54675 6 138 1.92E-45 T 13-10-2018 BMD_1222 8d178c36f48cc4d82a24174cfdcf7760 506 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 11 467 4.4E-168 T 13-10-2018 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264|Reactome: R-HSA-6798695 BMD_1222 8d178c36f48cc4d82a24174cfdcf7760 506 Gene3D G3DSA:3.20.20.70 153 329 4.1E-190 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1222 8d178c36f48cc4d82a24174cfdcf7760 506 PIRSF PIRSF000484 3 498 3.6E-140 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 BMD_1222 8d178c36f48cc4d82a24174cfdcf7760 506 Gene3D G3DSA:3.20.140.10 12 488 4.1E-190 T 13-10-2018 BMD_1222 8d178c36f48cc4d82a24174cfdcf7760 506 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 165 346 2.1E-8 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 BMD_1222 8d178c36f48cc4d82a24174cfdcf7760 506 SUPERFAMILY SSF51690 141 496 3.24E-125 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BMD_1306 e430d01bb4020389e8875d152297868f 78 SUPERFAMILY SSF52833 3 74 1.95E-14 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_1306 e430d01bb4020389e8875d152297868f 78 Gene3D G3DSA:3.40.30.10 1 78 5.2E-21 T 13-10-2018 BMD_1306 e430d01bb4020389e8875d152297868f 78 TIGRFAM TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family 4 76 4.6E-26 T 13-10-2018 IPR011911 Glutaredoxin-like protein, YruB BMD_1306 e430d01bb4020389e8875d152297868f 78 Pfam PF00462 Glutaredoxin 4 63 2.3E-13 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BMD_4413 97fcf4ed8b031d568457dde022574a88 141 SUPERFAMILY SSF54593 2 132 3.3E-32 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_4413 97fcf4ed8b031d568457dde022574a88 141 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 116 6.2E-21 T 13-10-2018 BMD_4413 97fcf4ed8b031d568457dde022574a88 141 ProSitePatterns PS00934 Glyoxalase I signature 1. 7 28 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 BMD_4413 97fcf4ed8b031d568457dde022574a88 141 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 5 131 3.5E-46 T 13-10-2018 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|MetaCyc: PWY-7854|Reactome: R-HSA-71032 BMD_4413 97fcf4ed8b031d568457dde022574a88 141 Gene3D G3DSA:3.10.180.10 1 133 1.2E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_4454 2ad067d00397d246928ddff9723ac2bb 68 Pfam PF06686 Stage III sporulation protein AC/AD protein family 8 62 8.9E-17 T 13-10-2018 IPR025664 Stage III sporulation protein AC/AD family BMD_4454 2ad067d00397d246928ddff9723ac2bb 68 TIGRFAM TIGR02848 spore_III_AC: stage III sporulation protein AC 3 66 2.3E-29 T 13-10-2018 IPR009570 Stage III sporulation protein AC BMD_3046 499034d4a030edc6b774c3b4fab50cd1 419 SUPERFAMILY SSF52440 165 289 7.19E-6 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BMD_3046 499034d4a030edc6b774c3b4fab50cd1 419 SUPERFAMILY SSF56059 9 416 2.24E-40 T 13-10-2018 BMD_3046 499034d4a030edc6b774c3b4fab50cd1 419 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 16 416 1.3E-79 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain BMD_3046 499034d4a030edc6b774c3b4fab50cd1 419 Gene3D G3DSA:3.30.1490.330 274 370 9.6E-11 T 13-10-2018 BMD_1615 c9ba0872116bcdcbe87b042110a1c0a5 142 Gene3D G3DSA:1.10.10.10 1 94 3.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1615 c9ba0872116bcdcbe87b042110a1c0a5 142 SUPERFAMILY SSF46785 1 101 6.99E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1615 c9ba0872116bcdcbe87b042110a1c0a5 142 SMART SM00418 8 82 4.5E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_1615 c9ba0872116bcdcbe87b042110a1c0a5 142 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 1.2E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_4474 0cdcc64e248cf2946b7c3aac6b060d42 61 Pfam PF14038 YqzE-like protein 2 55 9.4E-32 T 13-10-2018 IPR025622 YqzE-like protein BMD_4072 e2dcae90bc23c6063ce572d63e412545 146 Pfam PF10747 Sporulation inhibitor of replication protein SirA 2 141 8.6E-35 T 13-10-2018 IPR019683 Sporulation inhibitor of replication protein SirA BMD_4072 e2dcae90bc23c6063ce572d63e412545 146 Gene3D G3DSA:3.30.310.250 1 146 1.1E-46 T 13-10-2018 IPR038449 SirA superfamily BMD_2845 d298f2c96e71303a0c724e3b783d120c 150 Pfam PF00583 Acetyltransferase (GNAT) family 34 131 1.9E-14 T 13-10-2018 IPR000182 GNAT domain BMD_2845 d298f2c96e71303a0c724e3b783d120c 150 Gene3D G3DSA:3.40.630.30 1 149 1.0E-32 T 13-10-2018 BMD_2845 d298f2c96e71303a0c724e3b783d120c 150 SUPERFAMILY SSF55729 15 136 1.1E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4806 6e5c8291e1e66c3aaed09ee4474d323a 107 Pfam PF11009 Protein of unknown function (DUF2847) 2 101 6.5E-37 T 13-10-2018 IPR022551 Protein of unknown function DUF2847 BMD_4806 6e5c8291e1e66c3aaed09ee4474d323a 107 SUPERFAMILY SSF52833 2 101 4.55E-9 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4806 6e5c8291e1e66c3aaed09ee4474d323a 107 TIGRFAM TIGR04019 B_thiol_YtxJ: bacillithiol system protein YtxJ 2 102 7.3E-37 T 13-10-2018 IPR022551 Protein of unknown function DUF2847 BMD_4806 6e5c8291e1e66c3aaed09ee4474d323a 107 Gene3D G3DSA:3.40.30.10 1 105 3.6E-38 T 13-10-2018 BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 SUPERFAMILY SSF53756 375 759 2.9E-89 T 13-10-2018 BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 Pfam PF03065 Glycosyl hydrolase family 57 32 257 4.9E-8 T 13-10-2018 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 Gene3D G3DSA:3.40.50.2000 377 756 5.8E-88 T 13-10-2018 BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 SUPERFAMILY SSF88713 24 182 1.45E-8 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 Gene3D G3DSA:3.40.50.2000 557 740 5.8E-88 T 13-10-2018 BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 Gene3D G3DSA:3.20.110.10 6 327 6.9E-18 T 13-10-2018 IPR027291 Glycoside hydrolase 38, N-terminal domain superfamily BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 Pfam PF13439 Glycosyltransferase Family 4 387 559 2.4E-31 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BMD_4495 e06eb5219ae61fece84942e05b19c17f 772 Pfam PF00534 Glycosyl transferases group 1 574 738 1.0E-38 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_3225 bb06dc4b1c4a8555a608fe89bec7d06b 118 Pfam PF14534 Domain of unknown function (DUF4440) 20 106 2.5E-9 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 BMD_3225 bb06dc4b1c4a8555a608fe89bec7d06b 118 SUPERFAMILY SSF54427 6 113 3.07E-15 T 13-10-2018 IPR032710 NTF2-like domain superfamily BMD_3225 bb06dc4b1c4a8555a608fe89bec7d06b 118 Gene3D G3DSA:3.10.450.50 3 113 2.1E-12 T 13-10-2018 BMD_1093 d8fc43a1616b428c26674508afe70a93 150 TIGRFAM TIGR04011 poly_gGlu_PgsC: poly-gamma-glutamate biosynthesis protein PgsC 10 139 8.5E-45 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1093 d8fc43a1616b428c26674508afe70a93 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 118 132 6.5E-46 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1093 d8fc43a1616b428c26674508afe70a93 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 2 17 6.5E-46 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1093 d8fc43a1616b428c26674508afe70a93 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 66 80 6.5E-46 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1093 d8fc43a1616b428c26674508afe70a93 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 20 37 6.5E-46 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1093 d8fc43a1616b428c26674508afe70a93 150 PRINTS PR01759 Capsule biosynthesis protein CapC signature 88 101 6.5E-46 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_1093 d8fc43a1616b428c26674508afe70a93 150 Pfam PF14102 Capsule biosynthesis CapC 12 128 9.4E-39 T 13-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 BMD_0530 dab600651d10e726d8bbba11ff3a0f23 196 SUPERFAMILY SSF141523 3 93 2.09E-23 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_0530 dab600651d10e726d8bbba11ff3a0f23 196 Gene3D G3DSA:2.40.440.10 1 154 2.7E-31 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_0530 dab600651d10e726d8bbba11ff3a0f23 196 Pfam PF03734 L,D-transpeptidase catalytic domain 4 93 8.4E-16 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BMD_0911 6202f6b037a1dc76725db836640c746c 251 Gene3D G3DSA:3.30.450.40 80 250 6.4E-54 T 13-10-2018 IPR029016 GAF-like domain superfamily BMD_0911 6202f6b037a1dc76725db836640c746c 251 Pfam PF09339 IclR helix-turn-helix domain 7 56 2.8E-9 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BMD_0911 6202f6b037a1dc76725db836640c746c 251 SUPERFAMILY SSF46785 4 67 3.22E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0911 6202f6b037a1dc76725db836640c746c 251 SMART SM00346 4 94 0.0057 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BMD_0911 6202f6b037a1dc76725db836640c746c 251 SUPERFAMILY SSF55781 84 247 6.45E-45 T 13-10-2018 BMD_0911 6202f6b037a1dc76725db836640c746c 251 Gene3D G3DSA:1.10.10.10 2 72 6.6E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_0911 6202f6b037a1dc76725db836640c746c 251 Pfam PF01614 Bacterial transcriptional regulator 122 245 9.2E-38 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal BMD_3010 278253c7a555f8d3bf313b10d4e36723 186 SUPERFAMILY SSF81296 21 113 2.1E-18 T 13-10-2018 IPR014756 Immunoglobulin E-set BMD_3010 278253c7a555f8d3bf313b10d4e36723 186 Pfam PF04234 CopC domain 22 113 1.7E-21 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 BMD_3010 278253c7a555f8d3bf313b10d4e36723 186 Gene3D G3DSA:2.60.40.1220 25 114 3.0E-28 T 13-10-2018 BMD_1217 e9d8fa8dd01b855bf9a0b7e379cf7fb5 440 Pfam PF02386 Cation transport protein 31 421 2.2E-61 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 BMD_3413 b9b462dd5bd187e184f368e3114fa68c 141 SUPERFAMILY SSF47413 2 63 1.31E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3413 b9b462dd5bd187e184f368e3114fa68c 141 Pfam PF01381 Helix-turn-helix 7 61 3.2E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3413 b9b462dd5bd187e184f368e3114fa68c 141 Gene3D G3DSA:1.10.260.40 1 64 3.0E-18 T 13-10-2018 BMD_3413 b9b462dd5bd187e184f368e3114fa68c 141 SMART SM00530 6 61 2.0E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_0359 173d2a322c69ad69ec48aad7dcfa0586 445 Gene3D G3DSA:3.30.565.60 114 240 3.4E-14 T 13-10-2018 IPR038475 RecG, C-terminal domain superfamily BMD_0359 173d2a322c69ad69ec48aad7dcfa0586 445 Pfam PF13749 Putative ATP-dependent DNA helicase recG C-terminal 166 231 1.2E-7 T 13-10-2018 IPR025831 ATP-dependent DNA helicase RecG, C-terminal domain BMD_4148 de5d6d631f27a862a336b184d2fff024 260 Gene3D G3DSA:3.40.1180.10 16 260 3.1E-99 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 BMD_4148 de5d6d631f27a862a336b184d2fff024 260 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 31 259 40.107 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BMD_4148 de5d6d631f27a862a336b184d2fff024 260 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 204 221 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 BMD_4148 de5d6d631f27a862a336b184d2fff024 260 Pfam PF01255 Putative undecaprenyl diphosphate synthase 38 258 4.8E-83 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BMD_4148 de5d6d631f27a862a336b184d2fff024 260 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 31 258 1.4E-84 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BMD_4148 de5d6d631f27a862a336b184d2fff024 260 SUPERFAMILY SSF64005 28 253 8.76E-88 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 BMD_4282 c07a102702ea87150a4f1a566288a4d8 172 Pfam PF02620 Uncharacterized ACR, COG1399 56 166 2.6E-22 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD BMD_5066 d89d3a75f87adb033770836e920ef403 363 PIRSF PIRSF012569 1 363 2.1E-96 T 13-10-2018 IPR016599 Uncharacterised conserved protein UCP012569 BMD_5066 d89d3a75f87adb033770836e920ef403 363 Pfam PF13349 Putative adhesin 109 331 3.9E-15 T 13-10-2018 IPR025164 Putative adhesin BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 8 188 2.1E-35 T 13-10-2018 BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 Gene3D G3DSA:3.50.50.60 2 345 1.4E-92 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 SUPERFAMILY SSF51905 166 324 1.02E-8 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 161 185 2.6E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 2.6E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 122 130 2.6E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 121 139 1.7E-7 T 13-10-2018 BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.7E-7 T 13-10-2018 BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 165 183 1.7E-7 T 13-10-2018 BMD_2774 ca40b89f6b56a475ceef95266439f0ed 345 SUPERFAMILY SSF51905 1 184 8.21E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_5162 c236b312c7ff613161d37fc864843294 123 Pfam PF00072 Response regulator receiver domain 5 114 1.6E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5162 c236b312c7ff613161d37fc864843294 123 SMART SM00448 3 114 1.5E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5162 c236b312c7ff613161d37fc864843294 123 SUPERFAMILY SSF52172 4 119 3.27E-36 T 13-10-2018 IPR011006 CheY-like superfamily BMD_5162 c236b312c7ff613161d37fc864843294 123 Gene3D G3DSA:3.40.50.2300 1 123 2.2E-41 T 13-10-2018 BMD_2671 d6a53d74494b4f077a2f86f756f9fa2b 85 Pfam PF17279 Family of unknown function (DUF5344) 2 82 5.8E-21 T 13-10-2018 BMD_2671 d6a53d74494b4f077a2f86f756f9fa2b 85 ProDom PD061728 YWQI YWQIA COIL COILED 3 82 1.0E-16 T 13-10-2018 IPR020299 Uncharacterised protein family YwqI BMD_5096 cce28b752df51073134673b57a7224f4 76 SUPERFAMILY SSF117130 1 55 7.32E-21 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 BMD_5096 cce28b752df51073134673b57a7224f4 76 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 1.0E-14 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BMD_5096 cce28b752df51073134673b57a7224f4 76 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 61 3.5E-30 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BMD_5096 cce28b752df51073134673b57a7224f4 76 Pfam PF02599 Global regulator protein family 1 52 4.3E-27 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BMD_5096 cce28b752df51073134673b57a7224f4 76 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 66 18.128 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BMD_5096 cce28b752df51073134673b57a7224f4 76 Gene3D G3DSA:3.30.70.1680 1 62 1.4E-29 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 BMD_4166 19eda3754be431b72d4c7684fcd693fb 213 Pfam PF04347 Flagellar biosynthesis protein, FliO 87 190 3.3E-11 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 BMD_0468 eba96b0a5ec7986d98fe85080c1e21cc 388 Pfam PF05684 Protein of unknown function (DUF819) 11 386 4.5E-120 T 13-10-2018 IPR008537 Protein of unknown function DUF819 BMD_0114 ed4b3b99eea1a9d6c1811453ad242db1 141 SUPERFAMILY SSF69065 7 129 3.84E-42 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BMD_0114 ed4b3b99eea1a9d6c1811453ad242db1 141 Hamap MF_01468 Mini-ribonuclease 3 [mrnC]. 5 131 30.608 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family BMD_0114 ed4b3b99eea1a9d6c1811453ad242db1 141 Pfam PF00636 Ribonuclease III domain 15 112 2.6E-16 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BMD_0114 ed4b3b99eea1a9d6c1811453ad242db1 141 PIRSF PIRSF005520 1 135 1.3E-51 T 13-10-2018 IPR008226 Mini-ribonuclease 3 family BMD_0114 ed4b3b99eea1a9d6c1811453ad242db1 141 Gene3D G3DSA:1.10.1520.10 2 139 1.6E-49 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BMD_0114 ed4b3b99eea1a9d6c1811453ad242db1 141 SMART SM00535 3 132 2.9E-4 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BMD_4418 4729765c5a05be8bd68720b3afe73a91 269 SMART SM00062 43 268 1.8E-68 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_4418 4729765c5a05be8bd68720b3afe73a91 269 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 266 1.6E-61 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_4418 4729765c5a05be8bd68720b3afe73a91 269 Gene3D G3DSA:3.40.190.10 134 227 9.6E-68 T 13-10-2018 BMD_4418 4729765c5a05be8bd68720b3afe73a91 269 SUPERFAMILY SSF53850 5 267 9.13E-69 T 13-10-2018 BMD_4418 4729765c5a05be8bd68720b3afe73a91 269 Gene3D G3DSA:3.40.190.10 42 260 9.6E-68 T 13-10-2018 BMD_4418 4729765c5a05be8bd68720b3afe73a91 269 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 69 82 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site BMD_4418 4729765c5a05be8bd68720b3afe73a91 269 SMART SM00079 43 267 2.9E-6 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 BMD_4517 b0059010c63a29a1490f2ad328df56b2 280 Pfam PF00950 ABC 3 transport family 7 271 1.9E-64 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 BMD_4517 b0059010c63a29a1490f2ad328df56b2 280 Gene3D G3DSA:1.10.3470.10 65 277 1.5E-10 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_4517 b0059010c63a29a1490f2ad328df56b2 280 SUPERFAMILY SSF81345 4 269 4.84E-36 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_4445 94a4f5c5d8be61168e6a52e845ccfffb 130 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 1 129 24.566 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 BMD_4445 94a4f5c5d8be61168e6a52e845ccfffb 130 SUPERFAMILY SSF48013 3 124 8.24E-40 T 13-10-2018 IPR035926 NusB-like superfamily BMD_4445 94a4f5c5d8be61168e6a52e845ccfffb 130 Pfam PF01029 NusB family 4 125 6.1E-38 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BMD_4445 94a4f5c5d8be61168e6a52e845ccfffb 130 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 2 126 2.2E-43 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 BMD_4445 94a4f5c5d8be61168e6a52e845ccfffb 130 Gene3D G3DSA:1.10.940.10 1 130 2.5E-46 T 13-10-2018 IPR035926 NusB-like superfamily BMD_3894 94e0053cd68e4b8597f82b3c56358da7 439 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 28 410 2.2E-115 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 BMD_3894 94e0053cd68e4b8597f82b3c56358da7 439 Pfam PF02386 Cation transport protein 36 421 1.2E-62 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 BMD_4511 e5fbfc43fa4a5a4fcb8b4eabaddec4f2 403 Pfam PF07690 Major Facilitator Superfamily 15 356 1.5E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_4511 e5fbfc43fa4a5a4fcb8b4eabaddec4f2 403 Gene3D G3DSA:1.20.1250.20 2 388 3.0E-55 T 13-10-2018 BMD_4511 e5fbfc43fa4a5a4fcb8b4eabaddec4f2 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 60 76 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_4511 e5fbfc43fa4a5a4fcb8b4eabaddec4f2 403 SUPERFAMILY SSF103473 5 387 2.09E-52 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0310 29394af7df0724d5bda8cfc7adaa492f 173 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 94 163 3.6E-21 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 BMD_0310 29394af7df0724d5bda8cfc7adaa492f 173 Gene3D G3DSA:3.30.1380.10 34 163 2.2E-42 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_0310 29394af7df0724d5bda8cfc7adaa492f 173 SUPERFAMILY SSF55166 40 165 6.28E-32 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BMD_1718 0da80ee850cb53778148d4157aa44be3 272 SUPERFAMILY SSF50182 98 156 4.9E-8 T 13-10-2018 IPR010920 LSM domain superfamily BMD_1718 0da80ee850cb53778148d4157aa44be3 272 Gene3D G3DSA:2.30.30.60 113 163 7.4E-11 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BMD_1718 0da80ee850cb53778148d4157aa44be3 272 Pfam PF00924 Mechanosensitive ion channel 56 198 2.0E-20 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BMD_4748 8b1de81f2ae184570f702772e7a50cc5 209 TIGRFAM TIGR02840 spore_YtaF: putative sporulation protein YtaF 5 209 7.7E-71 T 13-10-2018 IPR014205 Sporulation protein YtaF BMD_4748 8b1de81f2ae184570f702772e7a50cc5 209 Pfam PF02659 Putative manganese efflux pump 125 206 5.3E-9 T 13-10-2018 IPR003810 Putative manganese efflux pump BMD_4748 8b1de81f2ae184570f702772e7a50cc5 209 Pfam PF02659 Putative manganese efflux pump 5 82 3.4E-10 T 13-10-2018 IPR003810 Putative manganese efflux pump BMD_2096 588682182b89cbcf16f7a864d7962e07 466 PIRSF PIRSF036492 2 466 2.3E-184 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 BMD_2096 588682182b89cbcf16f7a864d7962e07 466 Gene3D G3DSA:3.40.605.10 23 438 6.5E-175 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_2096 588682182b89cbcf16f7a864d7962e07 466 Pfam PF00171 Aldehyde dehydrogenase family 10 437 5.1E-93 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_2096 588682182b89cbcf16f7a864d7962e07 466 SUPERFAMILY SSF53720 6 439 1.44E-121 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_2096 588682182b89cbcf16f7a864d7962e07 466 Gene3D G3DSA:3.40.309.10 223 418 6.5E-175 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_2096 588682182b89cbcf16f7a864d7962e07 466 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 219 226 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BMD_0747 0e8e55bd66974aa7770ac0a3f2e9d714 170 Hamap MF_01444 Putative phosphoesterase . 1 168 39.203 T 13-10-2018 IPR022932 Putative phosphoesterase YjcG BMD_0747 0e8e55bd66974aa7770ac0a3f2e9d714 170 SUPERFAMILY SSF55144 1 169 4.01E-33 T 13-10-2018 IPR009097 Cyclic phosphodiesterase BMD_0747 0e8e55bd66974aa7770ac0a3f2e9d714 170 Gene3D G3DSA:3.90.1140.10 2 170 6.2E-45 T 13-10-2018 BMD_0747 0e8e55bd66974aa7770ac0a3f2e9d714 170 Pfam PF13563 2'-5' RNA ligase superfamily 11 153 1.6E-24 T 13-10-2018 BMD_1115 cc2f1cd64d350c689b320a04d2adb331 228 Pfam PF02397 Bacterial sugar transferase 34 222 1.8E-72 T 13-10-2018 IPR003362 Bacterial sugar transferase BMD_1115 cc2f1cd64d350c689b320a04d2adb331 228 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 16 227 9.6E-89 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase BMD_1508 74be047e17d608d20fe50dcdcc3abf69 336 Gene3D G3DSA:1.10.3470.10 7 334 2.2E-88 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_1508 74be047e17d608d20fe50dcdcc3abf69 336 SUPERFAMILY SSF81345 7 330 3.66E-80 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_1508 74be047e17d608d20fe50dcdcc3abf69 336 Pfam PF01032 FecCD transport family 22 330 2.6E-87 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_4235 cc95ddc76591d934af00c327f49d8541 573 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 7 447 1.5E-161 T 13-10-2018 BMD_4235 cc95ddc76591d934af00c327f49d8541 573 Gene3D G3DSA:3.40.970.40 247 292 5.8E-15 T 13-10-2018 BMD_4235 cc95ddc76591d934af00c327f49d8541 573 Pfam PF05670 Domain of unknown function (DUF814) 457 541 3.3E-31 T 13-10-2018 IPR008532 Domain of unknown function DUF814 BMD_4235 cc95ddc76591d934af00c327f49d8541 573 Gene3D G3DSA:1.10.8.50 171 239 3.1E-24 T 13-10-2018 BMD_4235 cc95ddc76591d934af00c327f49d8541 573 Gene3D G3DSA:2.30.310.10 4 170 2.8E-67 T 13-10-2018 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 Pfam PF14622 Ribonuclease-III-like 50 180 2.5E-36 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 Gene3D G3DSA:1.10.1520.10 32 185 3.6E-47 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 SUPERFAMILY SSF54768 149 259 1.19E-23 T 13-10-2018 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 SMART SM00358 193 260 1.5E-21 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain BMD_4206 92160568a984a2eacabaee33b3c7e075 265 Gene3D G3DSA:3.30.160.20 192 258 2.2E-21 T 13-10-2018 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 ProSitePatterns PS00517 Ribonuclease III family signature. 76 84 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 SMART SM00535 52 187 1.4E-58 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 SUPERFAMILY SSF69065 29 194 2.27E-52 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 Hamap MF_00104 Ribonuclease 3 [rnc]. 40 256 31.449 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 40 259 6.0E-79 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 BMD_4206 92160568a984a2eacabaee33b3c7e075 265 Pfam PF00035 Double-stranded RNA binding motif 194 258 2.6E-16 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain BMD_0703 a3c9a62c67280467fe5a4cfd7cf1e77b 304 Gene3D G3DSA:1.10.3720.10 90 299 1.1E-21 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0703 a3c9a62c67280467fe5a4cfd7cf1e77b 304 SUPERFAMILY SSF161098 94 284 3.92E-24 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0703 a3c9a62c67280467fe5a4cfd7cf1e77b 304 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 22 74 1.0E-12 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BMD_0703 a3c9a62c67280467fe5a4cfd7cf1e77b 304 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 301 1.6E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_4491 b1c4fe9b47e901ec99bf9c3cf8379a61 265 Pfam PF01940 Integral membrane protein DUF92 11 252 4.7E-63 T 13-10-2018 IPR002794 Protein of unknown function DUF92, TMEM19 GO:0016021 BMD_2794 afb61fea9228704f5480bde465b5f9cf 72 PRINTS PR00050 Cold shock protein signature 29 38 2.0E-9 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2794 afb61fea9228704f5480bde465b5f9cf 72 PRINTS PR00050 Cold shock protein signature 44 62 2.0E-9 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2794 afb61fea9228704f5480bde465b5f9cf 72 Gene3D G3DSA:2.40.50.140 20 70 4.6E-19 T 13-10-2018 BMD_2794 afb61fea9228704f5480bde465b5f9cf 72 SUPERFAMILY SSF50249 21 70 7.83E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_2794 afb61fea9228704f5480bde465b5f9cf 72 SMART SM00357 14 71 1.7E-13 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 BMD_2794 afb61fea9228704f5480bde465b5f9cf 72 Pfam PF00313 'Cold-shock' DNA-binding domain 21 70 2.2E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BMD_2806 2c0f0dfb6e1c4c1f9e116e0adcf3be76 270 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 264 8.0E-50 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_2806 2c0f0dfb6e1c4c1f9e116e0adcf3be76 270 Gene3D G3DSA:3.40.190.10 40 263 3.7E-77 T 13-10-2018 BMD_2806 2c0f0dfb6e1c4c1f9e116e0adcf3be76 270 SUPERFAMILY SSF53850 37 266 3.31E-51 T 13-10-2018 BMD_2806 2c0f0dfb6e1c4c1f9e116e0adcf3be76 270 SMART SM00062 38 265 3.1E-68 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BMD_2806 2c0f0dfb6e1c4c1f9e116e0adcf3be76 270 Gene3D G3DSA:3.40.190.10 107 227 3.7E-77 T 13-10-2018 BMD_1668 97b9990525f34bda08141a3339da3241 96 Pfam PF07875 Coat F domain 13 73 3.5E-22 T 13-10-2018 IPR012851 Spore coat protein CotF-like BMD_4122 c2ef2a05d4bf6f4099bb02c62085f333 250 Gene3D G3DSA:3.90.226.10 47 227 5.3E-29 T 13-10-2018 BMD_4122 c2ef2a05d4bf6f4099bb02c62085f333 250 Pfam PF00574 Clp protease 49 225 4.1E-34 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BMD_4122 c2ef2a05d4bf6f4099bb02c62085f333 250 SUPERFAMILY SSF52096 42 233 4.06E-37 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 ProSitePatterns PS00104 EPSP synthase signature 1. 89 103 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 427 3.8E-133 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 10 424 1.4E-125 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 Gene3D G3DSA:3.65.10.10 23 231 3.3E-159 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 Gene3D G3DSA:3.65.10.10 13 424 3.3E-159 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 ProSitePatterns PS00885 EPSP synthase signature 2. 341 359 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 429 34.085 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 SUPERFAMILY SSF55205 7 427 1.96E-137 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BMD_4302 81c48f6d63f65576b89f5fd63e31f86d 429 PIRSF PIRSF000505 1 429 3.6E-123 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BMD_2370 2edd6b1af7a0ad0f7f3e7f965d1a436e 293 SUPERFAMILY SSF161098 51 281 4.58E-60 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2370 2edd6b1af7a0ad0f7f3e7f965d1a436e 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 280 1.1E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2370 2edd6b1af7a0ad0f7f3e7f965d1a436e 293 Gene3D G3DSA:1.10.3720.10 46 290 1.3E-73 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0049 46c08d87adfd56131dac8c6dd5866480 275 Pfam PF04468 PSP1 C-terminal conserved region 61 146 2.3E-31 T 13-10-2018 IPR007557 PSP1, C-terminal BMD_4475 8448d6334dfa5f608b9f95ea5ab1f92c 126 Pfam PF14173 ComG operon protein 7 34 125 1.0E-15 T 13-10-2018 IPR020372 Competence operon G protein 7, ComGG BMD_1710 98dae34ba5e351c9db69547dcf39c122 143 Gene3D G3DSA:3.30.565.10 11 142 1.3E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_1710 98dae34ba5e351c9db69547dcf39c122 143 SMART SM00387 41 141 6.4E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1710 98dae34ba5e351c9db69547dcf39c122 143 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 42 135 7.1E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BMD_1710 98dae34ba5e351c9db69547dcf39c122 143 SUPERFAMILY SSF55874 38 135 1.64E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BMD_3361 bd758166c30218fccc244d18ccb80011 465 Gene3D G3DSA:1.10.4160.10 12 462 1.2E-95 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily BMD_3361 bd758166c30218fccc244d18ccb80011 465 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 28 444 8.0E-50 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 BMD_1042 10c1395be00fcea1930c4e704b5278f7 237 Pfam PF05076 Suppressor of fused protein (SUFU) 68 233 7.8E-7 T 13-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 BMD_1042 10c1395be00fcea1930c4e704b5278f7 237 SUPERFAMILY SSF103359 70 237 8.89E-6 T 13-10-2018 IPR037181 Suppressor of fused, N-terminal Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 BMD_2300 c65483e413a9a30726869a7a8119f840 192 SUPERFAMILY SSF55729 4 174 4.07E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2300 c65483e413a9a30726869a7a8119f840 192 Pfam PF00583 Acetyltransferase (GNAT) family 49 150 6.6E-11 T 13-10-2018 IPR000182 GNAT domain BMD_2300 c65483e413a9a30726869a7a8119f840 192 Gene3D G3DSA:3.40.630.30 1 153 8.8E-19 T 13-10-2018 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 Pfam PF02096 60Kd inner membrane protein 58 240 1.4E-60 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 57 240 8.8E-67 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 PRINTS PR00701 60kDa inner membrane protein signature 123 146 1.2E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 PRINTS PR00701 60kDa inner membrane protein signature 207 230 1.2E-14 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 PRINTS PR01900 YidC translocation/secretion protein signature 43 59 1.0E-8 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 PRINTS PR01900 YidC translocation/secretion protein signature 196 220 1.0E-8 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 PRINTS PR01900 YidC translocation/secretion protein signature 174 189 1.0E-8 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BMD_5270 125bf58a3d9cf62d184347ab1dea6cc3 254 Hamap MF_01811 Membrane protein insertase YidC [yidC]. 2 245 31.718 T 13-10-2018 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes GO:0016021|GO:0032977 BMD_0867 34880c31ef4d20d69f9e8ef289551762 219 Gene3D G3DSA:1.10.150.240 15 83 2.7E-53 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_0867 34880c31ef4d20d69f9e8ef289551762 219 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 64 183 9.7E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_0867 34880c31ef4d20d69f9e8ef289551762 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 183 2.4E-38 T 13-10-2018 BMD_0867 34880c31ef4d20d69f9e8ef289551762 219 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 70 157 1.8E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BMD_0867 34880c31ef4d20d69f9e8ef289551762 219 SUPERFAMILY SSF56784 1 212 7.44E-51 T 13-10-2018 IPR036412 HAD-like superfamily BMD_0867 34880c31ef4d20d69f9e8ef289551762 219 Gene3D G3DSA:3.40.50.1000 3 201 2.7E-53 T 13-10-2018 IPR023214 HAD superfamily BMD_3512 f24bf088b695c65200e4b32dea62e6b3 166 SUPERFAMILY SSF55729 1 150 1.42E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3512 f24bf088b695c65200e4b32dea62e6b3 166 Gene3D G3DSA:3.40.630.30 1 165 1.4E-39 T 13-10-2018 BMD_3512 f24bf088b695c65200e4b32dea62e6b3 166 Pfam PF00583 Acetyltransferase (GNAT) family 44 137 1.8E-15 T 13-10-2018 IPR000182 GNAT domain BMD_3121 c17844f9955eb90fa92f96912942624e 573 Gene3D G3DSA:3.30.413.10 429 570 4.3E-36 T 13-10-2018 BMD_3121 c17844f9955eb90fa92f96912942624e 573 SUPERFAMILY SSF55124 13 145 2.78E-34 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 8 573 58.342 T 13-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 PRINTS PR00397 Sirohaem Fe-binding site signature 481 499 5.6E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 PRINTS PR00397 Sirohaem Fe-binding site signature 433 451 5.6E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 433 561 0.041 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 481 497 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 75 136 1.6E-15 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 355 419 5.2E-15 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 SUPERFAMILY SSF55124 348 424 1.6E-21 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 17 562 3.1E-282 T 13-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_3121 c17844f9955eb90fa92f96912942624e 573 SUPERFAMILY SSF56014 431 563 1.57E-32 T 13-10-2018 BMD_3121 c17844f9955eb90fa92f96912942624e 573 SUPERFAMILY SSF56014 146 346 3.01E-60 T 13-10-2018 BMD_3121 c17844f9955eb90fa92f96912942624e 573 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 170 332 6.7E-48 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BMD_1181 0ede057cf08f170b1eaf403385740762 250 Pfam PF01863 Protein of unknown function DUF45 24 72 2.2E-5 T 13-10-2018 IPR002725 Protein of unknown function DUF45 BMD_1181 0ede057cf08f170b1eaf403385740762 250 Pfam PF01863 Protein of unknown function DUF45 81 222 3.9E-16 T 13-10-2018 IPR002725 Protein of unknown function DUF45 BMD_2453 f7866d2693712986b59d4711dbf0eb32 187 SUPERFAMILY SSF103473 10 178 2.22E-25 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2453 f7866d2693712986b59d4711dbf0eb32 187 Pfam PF07690 Major Facilitator Superfamily 10 177 8.5E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2453 f7866d2693712986b59d4711dbf0eb32 187 Gene3D G3DSA:1.20.1250.20 6 186 4.8E-25 T 13-10-2018 BMD_5049 5e68ee4d9948ff25fc9079b1e42d91ed 152 SUPERFAMILY SSF55811 3 128 1.18E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BMD_5049 5e68ee4d9948ff25fc9079b1e42d91ed 152 Gene3D G3DSA:3.90.79.10 1 152 4.1E-42 T 13-10-2018 BMD_5049 5e68ee4d9948ff25fc9079b1e42d91ed 152 Pfam PF00293 NUDIX domain 3 123 2.7E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BMD_5049 5e68ee4d9948ff25fc9079b1e42d91ed 152 PRINTS PR00502 NUDIX hydrolase family signature 40 55 5.7E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_5049 5e68ee4d9948ff25fc9079b1e42d91ed 152 PRINTS PR00502 NUDIX hydrolase family signature 26 40 5.7E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BMD_2321 fc4710577a38bf877dd2cc0be55e7e5b 133 SUPERFAMILY SSF54637 1 129 2.3E-37 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_2321 fc4710577a38bf877dd2cc0be55e7e5b 133 Pfam PF13279 Thioesterase-like superfamily 8 124 2.0E-16 T 13-10-2018 BMD_2321 fc4710577a38bf877dd2cc0be55e7e5b 133 Gene3D G3DSA:3.10.129.10 1 132 2.2E-35 T 13-10-2018 BMD_4813 00c95acf818bb0693e4358fce5f71791 201 Gene3D G3DSA:2.40.50.140 5 199 4.4E-78 T 13-10-2018 BMD_4813 00c95acf818bb0693e4358fce5f71791 201 Pfam PF01588 Putative tRNA binding domain 96 197 1.8E-27 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 BMD_4813 00c95acf818bb0693e4358fce5f71791 201 SUPERFAMILY SSF50249 92 199 3.43E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold BMD_4813 00c95acf818bb0693e4358fce5f71791 201 Gene3D G3DSA:3.30.1940.10 18 92 4.4E-78 T 13-10-2018 IPR037154 YtpR-like superfamily BMD_4813 00c95acf818bb0693e4358fce5f71791 201 Pfam PF14794 Domain of unknown function (DUF4479) 24 91 2.3E-25 T 13-10-2018 IPR027855 Domain of unknown function DUF4479 BMD_3019 179c8914a23f4b9b4b01810a549736f6 210 Pfam PF07875 Coat F domain 118 180 4.3E-14 T 13-10-2018 IPR012851 Spore coat protein CotF-like BMD_4540 0f1d03216add6963d8870a553498c29b 395 TIGRFAM TIGR02876 spore_yqfD: sporulation protein YqfD 5 386 2.6E-123 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD BMD_4540 0f1d03216add6963d8870a553498c29b 395 Pfam PF06898 Putative stage IV sporulation protein YqfD 7 385 7.5E-116 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD BMD_4540 0f1d03216add6963d8870a553498c29b 395 PIRSF PIRSF029895 1 395 2.4E-152 T 13-10-2018 IPR010690 Putative stage IV sporulation YqfD BMD_0806 6beb318dff03b2adcba6ffc50cf3d0e9 499 Gene3D G3DSA:1.20.1730.10 27 498 2.1E-36 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily BMD_0806 6beb318dff03b2adcba6ffc50cf3d0e9 499 Pfam PF00474 Sodium:solute symporter family 40 433 1.4E-21 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BMD_0716 7b8d2b0612a7edc40911e69553c62f8b 137 Pfam PF03817 Malonate transporter MadL subunit 1 117 2.6E-47 T 13-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 BMD_0716 7b8d2b0612a7edc40911e69553c62f8b 137 TIGRFAM TIGR00807 malonate_madL: malonate transporter, MadL subunit 1 121 1.4E-46 T 13-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 Gene3D G3DSA:2.160.20.10 34 431 3.2E-64 T 13-10-2018 IPR012334 Pectin lyase fold BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 SUPERFAMILY SSF51126 49 415 1.85E-51 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 SMART SM00710 218 240 1000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 SMART SM00710 316 338 13.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 SMART SM00710 155 184 180.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 SMART SM00710 288 309 57.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 SMART SM00710 375 396 9400.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat BMD_1725 6734f9bd9dadffe1b4b3d15414fa3c36 440 SMART SM00710 253 287 630.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat BMD_1345 96a5671f17dcc8450b335f57cd97ceed 199 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 23 153 6.6E-15 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like BMD_1345 96a5671f17dcc8450b335f57cd97ceed 199 TIGRFAM TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family 5 155 1.1E-39 T 13-10-2018 IPR014247 Sporulation lipoprotein YhcN/YlaJ GO:0030435 BMD_4691 1af577b1e9f5c57a31941a665038b6f3 361 Pfam PF10646 Sporulation and spore germination 77 185 4.4E-18 T 13-10-2018 IPR019606 GerMN domain BMD_4691 1af577b1e9f5c57a31941a665038b6f3 361 Pfam PF10646 Sporulation and spore germination 224 336 5.9E-15 T 13-10-2018 IPR019606 GerMN domain BMD_4691 1af577b1e9f5c57a31941a665038b6f3 361 SMART SM00909 252 341 2.9E-20 T 13-10-2018 IPR019606 GerMN domain BMD_4691 1af577b1e9f5c57a31941a665038b6f3 361 SMART SM00909 100 191 1.7E-22 T 13-10-2018 IPR019606 GerMN domain BMD_3847 9ffebfef8b4017e1ebd33059d48d71b7 353 Gene3D G3DSA:1.20.1250.20 9 345 7.9E-28 T 13-10-2018 BMD_3847 9ffebfef8b4017e1ebd33059d48d71b7 353 SUPERFAMILY SSF103473 15 334 2.75E-30 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3847 9ffebfef8b4017e1ebd33059d48d71b7 353 Pfam PF05977 Transmembrane secretion effector 7 316 3.3E-25 T 13-10-2018 IPR010290 Transmembrane secretion effector BMD_1699 19a50a4a7ebc578dec89d184d527395d 408 Gene3D G3DSA:1.20.1250.20 20 401 3.1E-39 T 13-10-2018 BMD_1699 19a50a4a7ebc578dec89d184d527395d 408 Pfam PF07690 Major Facilitator Superfamily 41 365 2.7E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1699 19a50a4a7ebc578dec89d184d527395d 408 SUPERFAMILY SSF103473 18 396 1.7E-51 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1412 bf9b2d368cd22de79038da1163826fe4 183 Hamap MF_01575 UPF0398 protein . 1 177 36.551 T 13-10-2018 IPR010697 Protein of unknown function DUF1273 BMD_1412 bf9b2d368cd22de79038da1163826fe4 183 PIRSF PIRSF021290 1 179 5.9E-73 T 13-10-2018 IPR010697 Protein of unknown function DUF1273 BMD_1412 bf9b2d368cd22de79038da1163826fe4 183 SUPERFAMILY SSF102405 1 177 2.65E-64 T 13-10-2018 BMD_1412 bf9b2d368cd22de79038da1163826fe4 183 Gene3D G3DSA:3.40.50.450 1 180 7.0E-70 T 13-10-2018 BMD_1412 bf9b2d368cd22de79038da1163826fe4 183 Pfam PF06908 Protein of unknown function (DUF1273) 4 171 2.9E-72 T 13-10-2018 IPR010697 Protein of unknown function DUF1273 BMD_4807 0f79c186430123a9a422cd5ba85e78e2 151 Pfam PF12732 YtxH-like protein 17 98 7.4E-20 T 13-10-2018 IPR024623 Uncharacterised protein family YtxH BMD_2814 3c7281f70620ecad33d7bcae2030febc 224 PIRSF PIRSF001357 1 223 4.6E-80 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BMD_2814 3c7281f70620ecad33d7bcae2030febc 224 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 3 219 38.536 T 13-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 BMD_2814 3c7281f70620ecad33d7bcae2030febc 224 SMART SM01133 4 217 1.2E-102 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BMD_2814 3c7281f70620ecad33d7bcae2030febc 224 SUPERFAMILY SSF51569 4 218 4.08E-85 T 13-10-2018 BMD_2814 3c7281f70620ecad33d7bcae2030febc 224 Gene3D G3DSA:3.20.20.70 1 221 1.7E-96 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2814 3c7281f70620ecad33d7bcae2030febc 224 Pfam PF01791 DeoC/LacD family aldolase 9 214 4.3E-19 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BMD_2814 3c7281f70620ecad33d7bcae2030febc 224 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 7 214 1.9E-90 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BMD_3045 6c1f1e827897a8bf372873e3a4ae5299 138 Pfam PF03994 Domain of Unknown Function (DUF350) 81 136 3.6E-13 T 13-10-2018 IPR007140 Protein of unknown function DUF350 BMD_3045 6c1f1e827897a8bf372873e3a4ae5299 138 Pfam PF03994 Domain of Unknown Function (DUF350) 18 65 5.5E-11 T 13-10-2018 IPR007140 Protein of unknown function DUF350 BMD_1644 cabc1be184ed5ddffd294e8b57e6e617 400 Gene3D G3DSA:3.40.50.2000 198 359 1.5E-29 T 13-10-2018 BMD_1644 cabc1be184ed5ddffd294e8b57e6e617 400 SUPERFAMILY SSF53756 85 366 8.7E-31 T 13-10-2018 BMD_1644 cabc1be184ed5ddffd294e8b57e6e617 400 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 211 359 3.0E-10 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 BMD_1644 cabc1be184ed5ddffd294e8b57e6e617 400 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 20 185 6.7E-31 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 BMD_3509 2d8400172ea426e88d0b8f7035496125 209 Pfam PF02517 CAAX protease self-immunity 103 198 5.3E-12 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BMD_4964 9f666aa5d6ce4d492a96626d43e53626 333 TIGRFAM TIGR02905 spore_yutH: spore coat protein YutH 3 313 1.3E-112 T 13-10-2018 IPR014254 Spore coat protein YutH BMD_4964 9f666aa5d6ce4d492a96626d43e53626 333 Gene3D G3DSA:3.90.1200.10 98 314 1.2E-27 T 13-10-2018 BMD_4964 9f666aa5d6ce4d492a96626d43e53626 333 SUPERFAMILY SSF56112 4 314 4.08E-15 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_4539 9ea2f4a97d6e26344d0c0b3a926e026d 324 Pfam PF02562 PhoH-like protein 113 316 4.7E-98 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 BMD_4539 9ea2f4a97d6e26344d0c0b3a926e026d 324 SMART SM00322 4 68 3.1E-5 T 13-10-2018 IPR004087 K Homology domain GO:0003676 BMD_4539 9ea2f4a97d6e26344d0c0b3a926e026d 324 SUPERFAMILY SSF54791 21 68 3.64E-5 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BMD_4539 9ea2f4a97d6e26344d0c0b3a926e026d 324 SUPERFAMILY SSF52540 54 291 5.16E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4539 9ea2f4a97d6e26344d0c0b3a926e026d 324 Gene3D G3DSA:3.40.50.300 109 316 4.1E-77 T 13-10-2018 BMD_4584 fe4b0adbf66d2007804f052df9b75e59 71 Pfam PF10750 Protein of unknown function (DUF2536) 1 68 5.3E-34 T 13-10-2018 IPR019686 Protein of unknown function DUF2536 BMD_0510 d4626c8375c599b6ab82cae09a6c97d1 129 Pfam PF14552 Tautomerase enzyme 38 118 4.4E-33 T 13-10-2018 IPR037479 Tautomerase, MSAD family BMD_0510 d4626c8375c599b6ab82cae09a6c97d1 129 Gene3D G3DSA:3.30.429.10 1 129 2.1E-52 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_0510 d4626c8375c599b6ab82cae09a6c97d1 129 SUPERFAMILY SSF55331 2 128 7.52E-42 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 SMART SM00382 30 218 1.1E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 SUPERFAMILY SSF52540 1 240 5.46E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 SMART SM00930 263 338 2.9E-28 T 13-10-2018 IPR018449 NIL domain BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 Pfam PF09383 NIL domain 266 337 5.7E-20 T 13-10-2018 IPR018449 NIL domain BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 Gene3D G3DSA:3.40.50.300 1 243 1.2E-76 T 13-10-2018 BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 Gene3D G3DSA:3.30.70.260 244 341 8.0E-29 T 13-10-2018 BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 SUPERFAMILY SSF55021 249 339 8.24E-24 T 13-10-2018 BMD_4984 c7028e2b8f3e404f881e7d9a58288fb4 341 Pfam PF00005 ABC transporter 21 169 2.6E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 Pfam PF00571 CBS domain 97 144 3.5E-6 T 13-10-2018 IPR000644 CBS domain BMD_0013 c88a573f9f54f2ad584586a164a18473 488 Pfam PF00571 CBS domain 154 204 1.3E-8 T 13-10-2018 IPR000644 CBS domain BMD_0013 c88a573f9f54f2ad584586a164a18473 488 SUPERFAMILY SSF51412 5 159 7.32E-31 T 13-10-2018 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 10 487 86.796 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 10 474 8.7E-170 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 10 456 3.3E-205 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 SMART SM01240 9 474 0.0 T 13-10-2018 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 298 310 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 SUPERFAMILY SSF51412 144 485 6.67E-126 T 13-10-2018 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 PIRSF PIRSF000130 1 488 1.1E-212 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BMD_0013 c88a573f9f54f2ad584586a164a18473 488 SMART SM00116 161 209 8.4E-10 T 13-10-2018 IPR000644 CBS domain BMD_0013 c88a573f9f54f2ad584586a164a18473 488 SMART SM00116 98 148 3.1E-5 T 13-10-2018 IPR000644 CBS domain BMD_0013 c88a573f9f54f2ad584586a164a18473 488 Gene3D G3DSA:3.20.20.70 1 487 1.0E-226 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3906 402a46d1a10030a4c5dcea6f81a7a312 192 Pfam PF05076 Suppressor of fused protein (SUFU) 36 189 7.2E-22 T 13-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 BMD_3906 402a46d1a10030a4c5dcea6f81a7a312 192 ProDom PD105609 PLASMID YQCF RSP1132 11 191 6.0E-31 T 13-10-2018 BMD_3328 a3ac92ca4c947de75ed6cd2314fd16b7 152 Gene3D G3DSA:1.25.40.10 17 144 2.8E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3328 a3ac92ca4c947de75ed6cd2314fd16b7 152 SUPERFAMILY SSF48452 17 135 2.37E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_2752 7e74ca0e8a007d2e84cea537ef174c7b 333 Pfam PF11553 Protein of unknown function (DUF3231) 2 157 3.4E-26 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2752 7e74ca0e8a007d2e84cea537ef174c7b 333 Pfam PF11553 Protein of unknown function (DUF3231) 170 330 1.6E-45 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2752 7e74ca0e8a007d2e84cea537ef174c7b 333 Gene3D G3DSA:1.20.1260.10 1 145 1.6E-8 T 13-10-2018 IPR012347 Ferritin-like BMD_2036 fdd1c152d0e25ac3735b69c6a3c7ddae 192 Gene3D G3DSA:3.40.50.450 1 191 3.4E-77 T 13-10-2018 BMD_2036 fdd1c152d0e25ac3735b69c6a3c7ddae 192 Pfam PF03641 Possible lysine decarboxylase 46 176 6.5E-41 T 13-10-2018 IPR031100 LOG family BMD_2036 fdd1c152d0e25ac3735b69c6a3c7ddae 192 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 2 179 1.8E-65 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG BMD_2036 fdd1c152d0e25ac3735b69c6a3c7ddae 192 SUPERFAMILY SSF102405 2 179 7.63E-59 T 13-10-2018 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 TIGRFAM TIGR00835 agcS: amino acid carrier protein 17 438 4.8E-160 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 92 107 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 PRINTS PR00175 Sodium/alanine symporter signature 92 114 9.2E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 PRINTS PR00175 Sodium/alanine symporter signature 302 320 9.2E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 PRINTS PR00175 Sodium/alanine symporter signature 407 427 9.2E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 PRINTS PR00175 Sodium/alanine symporter signature 183 201 9.2E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 PRINTS PR00175 Sodium/alanine symporter signature 347 369 9.2E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 PRINTS PR00175 Sodium/alanine symporter signature 211 230 9.2E-57 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3967 d77d164eebf988295b1e2885aae01ee4 477 Pfam PF01235 Sodium:alanine symporter family 56 450 5.5E-164 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_3743 d236f750ed445bdece7ae5d5e5dc28fd 137 Pfam PF11181 Heat induced stress protein YflT 6 122 9.2E-17 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_3128 56b31de1aedce8b30ae92e1a0566e2e2 177 Gene3D G3DSA:3.40.630.30 11 177 4.9E-39 T 13-10-2018 BMD_3128 56b31de1aedce8b30ae92e1a0566e2e2 177 Pfam PF00583 Acetyltransferase (GNAT) family 47 151 1.2E-19 T 13-10-2018 IPR000182 GNAT domain BMD_3128 56b31de1aedce8b30ae92e1a0566e2e2 177 SUPERFAMILY SSF55729 12 176 1.58E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1521 f00df0ab859d767dfca735d89fdc937c 386 Gene3D G3DSA:3.30.9.10 61 323 6.0E-116 T 13-10-2018 BMD_1521 f00df0ab859d767dfca735d89fdc937c 386 SUPERFAMILY SSF54373 218 323 5.1E-19 T 13-10-2018 BMD_1521 f00df0ab859d767dfca735d89fdc937c 386 Pfam PF01266 FAD dependent oxidoreductase 6 362 1.3E-44 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BMD_1521 f00df0ab859d767dfca735d89fdc937c 386 Gene3D G3DSA:3.50.50.60 6 368 6.0E-116 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_1521 f00df0ab859d767dfca735d89fdc937c 386 SUPERFAMILY SSF51905 4 381 2.33E-43 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_3705 4f6eb19f9fc3d00e089db089d138aa19 430 Gene3D G3DSA:1.20.1250.20 2 416 3.1E-51 T 13-10-2018 BMD_3705 4f6eb19f9fc3d00e089db089d138aa19 430 Pfam PF07690 Major Facilitator Superfamily 15 332 8.0E-36 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3705 4f6eb19f9fc3d00e089db089d138aa19 430 SUPERFAMILY SSF103473 5 411 1.01E-64 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2468 81b90245885f058fd24e1bb2cfb7bf03 410 Pfam PF01566 Natural resistance-associated macrophage protein 57 377 4.9E-21 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_1498 f74f634b3da5cd38da051db87c743650 319 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 86 96 - T 13-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BMD_1498 f74f634b3da5cd38da051db87c743650 319 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 242 252 - T 13-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BMD_1498 f74f634b3da5cd38da051db87c743650 319 SUPERFAMILY SSF52743 23 299 7.07E-87 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_1498 f74f634b3da5cd38da051db87c743650 319 PRINTS PR00723 Subtilisin serine protease family (S8) signature 82 95 7.5E-23 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_1498 f74f634b3da5cd38da051db87c743650 319 PRINTS PR00723 Subtilisin serine protease family (S8) signature 241 257 7.5E-23 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_1498 f74f634b3da5cd38da051db87c743650 319 PRINTS PR00723 Subtilisin serine protease family (S8) signature 40 59 7.5E-23 T 13-10-2018 IPR015500 Peptidase S8, subtilisin-related BMD_1498 f74f634b3da5cd38da051db87c743650 319 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 45 56 - T 13-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BMD_1498 f74f634b3da5cd38da051db87c743650 319 Gene3D G3DSA:3.40.50.200 3 306 4.5E-111 T 13-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BMD_1498 f74f634b3da5cd38da051db87c743650 319 Pfam PF00082 Subtilase family 40 285 2.6E-60 T 13-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BMD_4248 1cef17ac90806227baef872f0c99cc48 95 Gene3D G3DSA:1.20.120.910 10 90 1.0E-7 T 13-10-2018 BMD_3956 707cb956ec0ee23827cd4775f5bf1c21 329 SUPERFAMILY SSF53448 1 233 2.72E-21 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3956 707cb956ec0ee23827cd4775f5bf1c21 329 Gene3D G3DSA:3.90.550.10 1 222 6.9E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_3956 707cb956ec0ee23827cd4775f5bf1c21 329 Pfam PF00535 Glycosyl transferase family 2 7 176 9.6E-22 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_1112 5ae176447ef976f630e520710b993361 129 Pfam PF13276 HTH-like domain 24 80 2.1E-8 T 13-10-2018 IPR025948 HTH-like domain BMD_1442 f2382dce9b22127d4780eb8ebef5280f 85 Pfam PF10752 Protein of unknown function (DUF2533) 1 84 2.0E-36 T 13-10-2018 IPR019688 Protein of unknown function DUF2533 BMD_3872 9fd554693607438897f1856f5230f02c 199 Gene3D G3DSA:1.10.3300.10 9 191 1.1E-16 T 13-10-2018 IPR023286 ABATE domain superfamily BMD_3872 9fd554693607438897f1856f5230f02c 199 SUPERFAMILY SSF160904 7 188 8.24E-29 T 13-10-2018 BMD_3872 9fd554693607438897f1856f5230f02c 199 Pfam PF11706 CGNR zinc finger 150 189 3.1E-15 T 13-10-2018 IPR021005 Zinc finger, CGNR BMD_1421 22abda3c00f52843a99d9821b026c221 381 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 301 307 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BMD_1421 22abda3c00f52843a99d9821b026c221 381 Pfam PF01170 Putative RNA methylase family UPF0020 164 368 4.0E-60 T 13-10-2018 IPR000241 Putative RNA methylase domain BMD_1421 22abda3c00f52843a99d9821b026c221 381 Gene3D G3DSA:3.30.2130.30 8 247 3.9E-122 T 13-10-2018 BMD_1421 22abda3c00f52843a99d9821b026c221 381 SUPERFAMILY SSF53335 145 362 4.71E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_1421 22abda3c00f52843a99d9821b026c221 381 SMART SM00981 57 156 1.5E-5 T 13-10-2018 IPR004114 THUMP domain GO:0003723 BMD_1421 22abda3c00f52843a99d9821b026c221 381 Pfam PF02926 THUMP domain 19 122 7.6E-11 T 13-10-2018 IPR004114 THUMP domain GO:0003723 BMD_1421 22abda3c00f52843a99d9821b026c221 381 Gene3D G3DSA:3.40.50.150 162 367 3.9E-122 T 13-10-2018 BMD_1289 c6a005aaf05925bec1c94eb2785e6e21 231 Pfam PF00583 Acetyltransferase (GNAT) family 28 146 4.8E-12 T 13-10-2018 IPR000182 GNAT domain BMD_1289 c6a005aaf05925bec1c94eb2785e6e21 231 Gene3D G3DSA:3.40.630.30 7 229 2.4E-49 T 13-10-2018 BMD_1289 c6a005aaf05925bec1c94eb2785e6e21 231 SUPERFAMILY SSF55729 18 151 1.34E-15 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 SUPERFAMILY SSF51735 6 259 2.12E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 3.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.6E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 Gene3D G3DSA:3.40.50.720 2 259 6.3E-78 T 13-10-2018 BMD_2703 6da11ee728a8ab380465f0f79b94545d 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 256 1.3E-60 T 13-10-2018 BMD_4405 ce98da6f2af138aa00e663b23f5ebe16 543 Gene3D G3DSA:1.10.10.2840 399 529 9.0E-15 T 13-10-2018 BMD_4405 ce98da6f2af138aa00e663b23f5ebe16 543 Pfam PF07905 Purine catabolism regulatory protein-like family 18 136 6.3E-35 T 13-10-2018 IPR012914 Purine catabolism PurC-like domain BMD_4405 ce98da6f2af138aa00e663b23f5ebe16 543 Pfam PF13556 PucR C-terminal helix-turn-helix domain 468 524 1.6E-17 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain BMD_4250 a2973dc40b252078916291a931f2f1ab 164 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 36 3.7E-18 T 13-10-2018 IPR019933 DivIVA domain BMD_4250 a2973dc40b252078916291a931f2f1ab 164 Pfam PF05103 DivIVA protein 3 133 5.9E-51 T 13-10-2018 IPR007793 DivIVA family BMD_3965 f15de828b7ee794de45807cb9f805436 160 Pfam PF13673 Acetyltransferase (GNAT) domain 40 153 6.3E-13 T 13-10-2018 IPR000182 GNAT domain BMD_3965 f15de828b7ee794de45807cb9f805436 160 SUPERFAMILY SSF55729 3 153 1.2E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3965 f15de828b7ee794de45807cb9f805436 160 Gene3D G3DSA:3.40.630.30 1 139 1.9E-22 T 13-10-2018 BMD_3101 833f1f50c4ca042951d6b80310026fa6 118 Pfam PF01381 Helix-turn-helix 5 59 4.2E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3101 833f1f50c4ca042951d6b80310026fa6 118 SMART SM00530 4 59 1.5E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BMD_3101 833f1f50c4ca042951d6b80310026fa6 118 Gene3D G3DSA:1.10.260.40 3 112 4.6E-19 T 13-10-2018 BMD_3101 833f1f50c4ca042951d6b80310026fa6 118 SUPERFAMILY SSF47413 3 66 6.7E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_5142 88eb124d0a7fb772afe04d5b134fad60 73 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 12 64 1.1E-14 T 13-10-2018 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter BMD_2586 f81c4c006226199e010581f88d33571c 539 Pfam PF01740 STAS domain 428 523 5.3E-16 T 13-10-2018 IPR002645 STAS domain BMD_2586 f81c4c006226199e010581f88d33571c 539 SUPERFAMILY SSF52091 427 523 1.61E-17 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2586 f81c4c006226199e010581f88d33571c 539 Pfam PF00916 Sulfate permease family 15 379 3.1E-95 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BMD_2586 f81c4c006226199e010581f88d33571c 539 Gene3D G3DSA:3.30.750.24 412 525 2.8E-23 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2071 7828916792a5a3ab4a4e4bdc8d8fc558 321 Gene3D G3DSA:3.90.550.10 2 214 5.5E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2071 7828916792a5a3ab4a4e4bdc8d8fc558 321 Pfam PF00535 Glycosyl transferase family 2 8 168 2.0E-36 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_2071 7828916792a5a3ab4a4e4bdc8d8fc558 321 SUPERFAMILY SSF53448 5 258 2.02E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_5040 b67c6e06194056bf0ff5651c91f77a83 82 Pfam PF05768 Glutaredoxin-like domain (DUF836) 3 62 6.7E-18 T 13-10-2018 IPR008554 Glutaredoxin-like BMD_5040 b67c6e06194056bf0ff5651c91f77a83 82 Gene3D G3DSA:3.40.30.10 1 75 7.7E-21 T 13-10-2018 BMD_5040 b67c6e06194056bf0ff5651c91f77a83 82 SUPERFAMILY SSF52833 3 75 2.57E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4987 6c92c13ab22ef9ab15cf962df30c6065 81 ProDom PD058325 YUSG BH3483 6 81 4.0E-13 T 13-10-2018 IPR020140 Uncharacterised protein family YusG BMD_4987 6c92c13ab22ef9ab15cf962df30c6065 81 Pfam PF10830 Protein of unknown function (DUF2553) 5 81 8.7E-32 T 13-10-2018 IPR020140 Uncharacterised protein family YusG BMD_3176 caaf0a8e534bad128d5bd28bbc76e928 263 Pfam PF01925 Sulfite exporter TauE/SafE 10 252 2.9E-36 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BMD_0722 e78b4d6f84b040b9a1d671694f1b2c77 605 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 13 601 3.6E-224 T 13-10-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 BMD_0722 e78b4d6f84b040b9a1d671694f1b2c77 605 SUPERFAMILY SSF55486 10 586 2.57E-143 T 13-10-2018 BMD_0722 e78b4d6f84b040b9a1d671694f1b2c77 605 Pfam PF08439 Oligopeptidase F 120 189 3.8E-25 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain BMD_0722 e78b4d6f84b040b9a1d671694f1b2c77 605 Gene3D G3DSA:1.10.1370.20 234 605 1.3E-147 T 13-10-2018 BMD_0722 e78b4d6f84b040b9a1d671694f1b2c77 605 Gene3D G3DSA:1.10.287.830 187 233 1.7E-22 T 13-10-2018 BMD_0722 e78b4d6f84b040b9a1d671694f1b2c77 605 Pfam PF01432 Peptidase family M3 211 590 2.6E-83 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 BMD_0722 e78b4d6f84b040b9a1d671694f1b2c77 605 Gene3D G3DSA:1.20.140.70 30 185 7.6E-59 T 13-10-2018 BMD_0943 e856d355e9d093bbda8a25e26d9451fb 268 Gene3D G3DSA:3.40.50.1820 31 268 8.3E-60 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_0943 e856d355e9d093bbda8a25e26d9451fb 268 Pfam PF06028 Alpha/beta hydrolase of unknown function (DUF915) 29 266 2.2E-40 T 13-10-2018 IPR010315 Protein of unknown function DUF915, hydrolase-like BMD_0943 e856d355e9d093bbda8a25e26d9451fb 268 SUPERFAMILY SSF53474 32 254 8.59E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_5266 aa70e3408bb4a4f356727209f95f9645 238 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 209 1.0E-51 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BMD_5266 aa70e3408bb4a4f356727209f95f9645 238 PIRSF PIRSF003078 1 220 1.3E-59 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BMD_5266 aa70e3408bb4a4f356727209f95f9645 238 Pfam PF02527 rRNA small subunit methyltransferase G 21 203 4.1E-60 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BMD_5266 aa70e3408bb4a4f356727209f95f9645 238 SUPERFAMILY SSF53335 1 237 2.47E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_5266 aa70e3408bb4a4f356727209f95f9645 238 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 14 214 28.615 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BMD_5266 aa70e3408bb4a4f356727209f95f9645 238 Gene3D G3DSA:3.40.50.150 1 238 3.1E-86 T 13-10-2018 BMD_2375 9e00cd169abc2466177c7618715bc84a 142 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 17 115 1.5E-12 T 13-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like BMD_2375 9e00cd169abc2466177c7618715bc84a 142 SUPERFAMILY SSF55961 8 141 2.65E-39 T 13-10-2018 BMD_2375 9e00cd169abc2466177c7618715bc84a 142 Gene3D G3DSA:3.30.530.20 1 142 6.4E-42 T 13-10-2018 IPR023393 START-like domain superfamily BMD_2727 2e5137fb77d54bbc0a5f1880484c370d 300 Pfam PF01636 Phosphotransferase enzyme family 33 259 3.4E-29 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase BMD_2727 2e5137fb77d54bbc0a5f1880484c370d 300 SUPERFAMILY SSF56112 14 258 3.64E-32 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_2727 2e5137fb77d54bbc0a5f1880484c370d 300 Gene3D G3DSA:3.30.200.20 14 103 7.3E-30 T 13-10-2018 BMD_2727 2e5137fb77d54bbc0a5f1880484c370d 300 Gene3D G3DSA:3.90.1200.10 108 299 1.4E-33 T 13-10-2018 BMD_3608 a80fd40d07ceaa993712bf107d842378 142 SUPERFAMILY SSF54637 7 136 6.09E-31 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_3608 a80fd40d07ceaa993712bf107d842378 142 Pfam PF01575 MaoC like domain 15 120 1.8E-19 T 13-10-2018 IPR002539 MaoC-like dehydratase domain BMD_3608 a80fd40d07ceaa993712bf107d842378 142 Gene3D G3DSA:3.10.129.10 6 138 2.0E-37 T 13-10-2018 BMD_0636 06138c32d5a33e6e667c2e06b342bab3 419 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 31 203 7.3E-17 T 13-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 BMD_0636 06138c32d5a33e6e667c2e06b342bab3 419 Gene3D G3DSA:3.30.2010.10 203 284 2.8E-26 T 13-10-2018 BMD_0636 06138c32d5a33e6e667c2e06b342bab3 419 Pfam PF01435 Peptidase family M48 207 415 2.0E-34 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BMD_2680 e2e81aedcfc395fca0597af3724bfbad 157 Gene3D G3DSA:3.30.450.150 2 157 1.1E-52 T 13-10-2018 IPR038084 GlcG-like domain superfamily BMD_2680 e2e81aedcfc395fca0597af3724bfbad 157 Pfam PF03928 Haem-degrading 25 151 1.2E-34 T 13-10-2018 IPR005624 Haem-degrading BMD_2680 e2e81aedcfc395fca0597af3724bfbad 157 SUPERFAMILY SSF143744 16 155 1.7E-27 T 13-10-2018 IPR038084 GlcG-like domain superfamily BMD_2680 e2e81aedcfc395fca0597af3724bfbad 157 PIRSF PIRSF008757 2 157 5.4E-53 T 13-10-2018 IPR010371 Uncharacterised protein family UPF0303 BMD_2254 ae016c3de4d14a1473a422338a871195 282 Pfam PF03631 Virulence factor BrkB 17 268 9.7E-73 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_2254 ae016c3de4d14a1473a422338a871195 282 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 6 267 3.8E-53 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_2254 ae016c3de4d14a1473a422338a871195 282 PIRSF PIRSF035875 1 281 9.0E-86 T 13-10-2018 IPR017039 Virulence factor BrkB BMD_3934 1da10712b23b73527861398c85caaebf 60 Pfam PF13076 Fur-regulated basic protein A 12 45 9.3E-14 T 13-10-2018 IPR025072 Fur-regulated basic protein A BMD_4370 fba5523e6fab51099e150342a0828e77 493 PIRSF PIRSF005690 6 492 5.0E-131 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_4370 fba5523e6fab51099e150342a0828e77 493 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 27 479 8.6E-147 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_0883 abe02a98cac43a3198b9e824d14e2aad 336 Pfam PF05913 Bacterial protein of unknown function (DUF871) 1 332 3.6E-93 T 13-10-2018 IPR008589 Protein of unknown function DUF871, prokaryotic BMD_0883 abe02a98cac43a3198b9e824d14e2aad 336 SUPERFAMILY SSF50891 241 333 6.45E-26 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0883 abe02a98cac43a3198b9e824d14e2aad 336 Gene3D G3DSA:3.20.20.70 1 231 2.2E-65 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_0883 abe02a98cac43a3198b9e824d14e2aad 336 Gene3D G3DSA:2.40.100.10 235 335 5.6E-31 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily BMD_0883 abe02a98cac43a3198b9e824d14e2aad 336 SUPERFAMILY SSF51445 1 228 1.47E-55 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_2522 3ee3e812e59bf6c97b6458b308768967 472 Pfam PF06277 Ethanolamine utilisation protein EutA 6 470 2.6E-139 T 13-10-2018 IPR009377 Ethanolamine utilisation EutA BMD_2522 3ee3e812e59bf6c97b6458b308768967 472 SUPERFAMILY SSF53067 9 312 1.95E-10 T 13-10-2018 BMD_2522 3ee3e812e59bf6c97b6458b308768967 472 PIRSF PIRSF012293 2 472 1.2E-124 T 13-10-2018 IPR009377 Ethanolamine utilisation EutA BMD_3193 7099f34ef5d4ed20465f0180aaf0f073 45 Pfam PF12841 YvrJ protein family 7 41 3.0E-16 T 13-10-2018 IPR024419 Protein of unknown function YvrJ BMD_2531 59b1c139f4125db124d38050dbb5df32 213 Pfam PF01810 LysE type translocator 15 204 1.2E-27 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_5205 3eb743299667aa875530e37987acce08 261 SUPERFAMILY SSF56219 1 260 4.19E-37 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BMD_5205 3eb743299667aa875530e37987acce08 261 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 20 253 1.1E-8 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BMD_5205 3eb743299667aa875530e37987acce08 261 Gene3D G3DSA:3.60.10.10 1 261 4.6E-79 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BMD_1495 e091917aca66c2c577f7f93ae7a3ad69 326 Gene3D G3DSA:1.20.1260.10 1 145 7.3E-6 T 13-10-2018 IPR012347 Ferritin-like BMD_1495 e091917aca66c2c577f7f93ae7a3ad69 326 Pfam PF11553 Protein of unknown function (DUF3231) 3 157 2.3E-31 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_1495 e091917aca66c2c577f7f93ae7a3ad69 326 Pfam PF11553 Protein of unknown function (DUF3231) 170 325 1.4E-34 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_4615 d21589bec1895ead9a40739285cb429c 300 SMART SM00287 28 90 5.1E-7 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_4615 d21589bec1895ead9a40739285cb429c 300 SUPERFAMILY SSF53187 118 291 8.79E-48 T 13-10-2018 BMD_4615 d21589bec1895ead9a40739285cb429c 300 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 121 287 6.3E-46 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_4615 d21589bec1895ead9a40739285cb429c 300 PIRSF PIRSF037846 26 291 4.5E-82 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 BMD_4615 d21589bec1895ead9a40739285cb429c 300 PIRSF PIRSF037846 1 102 7.3E-11 T 13-10-2018 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted MetaCyc: PWY-7883 BMD_4615 d21589bec1895ead9a40739285cb429c 300 Gene3D G3DSA:2.30.30.40 29 92 9.9E-14 T 13-10-2018 BMD_4615 d21589bec1895ead9a40739285cb429c 300 SMART SM00646 178 287 4.3E-25 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BMD_4615 d21589bec1895ead9a40739285cb429c 300 Gene3D G3DSA:3.40.630.40 117 296 9.2E-55 T 13-10-2018 BMD_4615 d21589bec1895ead9a40739285cb429c 300 Pfam PF08239 Bacterial SH3 domain 37 85 8.8E-10 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type BMD_5213 f37cd8ea60cb8c86e1145446400fd9e3 599 Gene3D G3DSA:1.20.1530.20 2 393 4.4E-19 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily BMD_5213 f37cd8ea60cb8c86e1145446400fd9e3 599 SUPERFAMILY SSF51735 402 491 3.28E-8 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_5213 f37cd8ea60cb8c86e1145446400fd9e3 599 Pfam PF00999 Sodium/hydrogen exchanger family 10 390 3.6E-35 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BMD_5213 f37cd8ea60cb8c86e1145446400fd9e3 599 Pfam PF02254 TrkA-N domain 402 484 4.4E-7 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BMD_5213 f37cd8ea60cb8c86e1145446400fd9e3 599 Gene3D G3DSA:3.40.50.720 398 516 2.8E-9 T 13-10-2018 BMD_3474 c42be749d847d85290337390db990976 129 Gene3D G3DSA:1.10.1660.10 1 129 3.8E-33 T 13-10-2018 BMD_3474 c42be749d847d85290337390db990976 129 SMART SM00422 3 72 5.5E-21 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_3474 c42be749d847d85290337390db990976 129 SUPERFAMILY SSF46955 3 117 1.36E-29 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_3474 c42be749d847d85290337390db990976 129 Pfam PF13411 MerR HTH family regulatory protein 3 69 9.7E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BMD_4841 50e9022397a97e5f9afa38899df7e482 189 SUPERFAMILY SSF53335 17 146 1.81E-23 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4841 50e9022397a97e5f9afa38899df7e482 189 Pfam PF06962 Putative rRNA methylase 48 187 2.8E-53 T 13-10-2018 IPR010719 Putative rRNA methylase BMD_4841 50e9022397a97e5f9afa38899df7e482 189 Gene3D G3DSA:3.40.50.150 1 189 1.8E-72 T 13-10-2018 BMD_1018 874c752b784e0cdd73a1dfe3a2a530dc 433 Pfam PF02378 Phosphotransferase system, EIIC 29 344 2.0E-59 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_1018 874c752b784e0cdd73a1dfe3a2a530dc 433 PIRSF PIRSF006351 1 426 7.3E-151 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 BMD_1018 874c752b784e0cdd73a1dfe3a2a530dc 433 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 17 418 1.6E-124 T 13-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 BMD_0527 0196bdb879f3cbdbf086a8e4e3d37131 303 Gene3D G3DSA:3.30.2350.10 74 290 1.4E-66 T 13-10-2018 BMD_0527 0196bdb879f3cbdbf086a8e4e3d37131 303 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 294 7.4E-71 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0527 0196bdb879f3cbdbf086a8e4e3d37131 303 Pfam PF00849 RNA pseudouridylate synthase 91 244 2.8E-35 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0527 0196bdb879f3cbdbf086a8e4e3d37131 303 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_0527 0196bdb879f3cbdbf086a8e4e3d37131 303 SUPERFAMILY SSF55120 75 293 4.16E-67 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BMD_1655 6370afacaa495ae7b832edd79555fef3 486 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 11 486 4.2E-183 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 BMD_1655 6370afacaa495ae7b832edd79555fef3 486 Gene3D G3DSA:3.40.605.10 28 463 1.6E-161 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BMD_1655 6370afacaa495ae7b832edd79555fef3 486 Gene3D G3DSA:3.40.309.10 255 455 1.6E-161 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BMD_1655 6370afacaa495ae7b832edd79555fef3 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BMD_1655 6370afacaa495ae7b832edd79555fef3 486 Hamap MF_01670 Malonate-semialdehyde dehydrogenase [iolA]. 4 486 74.536 T 13-10-2018 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642 BMD_1655 6370afacaa495ae7b832edd79555fef3 486 Pfam PF00171 Aldehyde dehydrogenase family 18 482 2.5E-157 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BMD_1655 6370afacaa495ae7b832edd79555fef3 486 SUPERFAMILY SSF53720 6 485 8.51E-156 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BMD_3682 1a1bc608fb136fef0d1add9ec324e40d 283 SUPERFAMILY SSF46689 3 78 3.05E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3682 1a1bc608fb136fef0d1add9ec324e40d 283 Gene3D G3DSA:3.40.50.10490 95 278 3.0E-35 T 13-10-2018 BMD_3682 1a1bc608fb136fef0d1add9ec324e40d 283 Gene3D G3DSA:1.10.10.10 1 76 2.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3682 1a1bc608fb136fef0d1add9ec324e40d 283 SUPERFAMILY SSF53697 97 263 1.02E-24 T 13-10-2018 BMD_3682 1a1bc608fb136fef0d1add9ec324e40d 283 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 74 3.8E-13 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BMD_3682 1a1bc608fb136fef0d1add9ec324e40d 283 Pfam PF01380 SIS domain 127 252 9.3E-15 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BMD_0219 32443fceb0c2a6612e24c9549178935c 352 Gene3D G3DSA:2.50.20.10 41 234 3.0E-9 T 13-10-2018 BMD_0219 32443fceb0c2a6612e24c9549178935c 352 SUPERFAMILY SSF89392 49 222 1.14E-14 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX BMD_1202 9fb87e75c9bb44a9a8ec5c51adba7c76 374 Pfam PF03845 Spore germination protein 10 321 3.9E-77 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_1202 9fb87e75c9bb44a9a8ec5c51adba7c76 374 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 11 360 1.7E-47 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_4024 2aee9e9e1a4a8b235bb49f4d39792d52 92 TIGRFAM TIGR03831 YgiT_finger: YgiT-type zinc finger domain 5 52 1.5E-11 T 13-10-2018 IPR022453 Zinc finger, MqsA-type BMD_4024 2aee9e9e1a4a8b235bb49f4d39792d52 92 TIGRFAM TIGR03829 YokU_near_AblA: uncharacterized protein, YokU family 4 92 7.8E-43 T 13-10-2018 IPR022451 Conserved hypothetical protein CHP03829, YokU BMD_4024 2aee9e9e1a4a8b235bb49f4d39792d52 92 Pfam PF14122 YokU-like protein, putative antitoxin 4 90 3.5E-40 T 13-10-2018 IPR022451 Conserved hypothetical protein CHP03829, YokU BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 Gene3D G3DSA:3.90.190.20 315 459 1.8E-44 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 Gene3D G3DSA:3.40.1190.10 87 314 2.3E-70 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 Gene3D G3DSA:3.40.1390.10 2 83 4.4E-21 T 13-10-2018 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 SUPERFAMILY SSF53244 316 453 1.1E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 456 35.301 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 SUPERFAMILY SSF63418 1 102 1.44E-24 T 13-10-2018 IPR035911 MurE/MurF, N-terminal BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 Pfam PF01225 Mur ligase family, catalytic domain 27 101 4.2E-12 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 394 1.6E-17 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 SUPERFAMILY SSF53623 105 313 5.49E-54 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 Pfam PF08245 Mur ligase middle domain 111 295 1.2E-47 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BMD_0214 a9503bd395de570f6d63af2b7f72d1eb 460 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 32 453 8.5E-140 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BMD_3519 0cf09c7de788a3bdcd63660307084826 146 Pfam PF17369 Family of unknown function (DUF5391) 2 136 1.8E-38 T 13-10-2018 IPR020204 Uncharacterised protein family, YxaJ BMD_3519 0cf09c7de788a3bdcd63660307084826 146 ProDom PD086672 YXAJ MEMBRANE TRANSMEMBRANE 9 137 8.0E-22 T 13-10-2018 IPR020204 Uncharacterised protein family, YxaJ BMD_1372 8bd4845549aabb00c2d21a3a7f45f37c 285 SUPERFAMILY SSF52374 1 281 3.87E-102 T 13-10-2018 BMD_1372 8bd4845549aabb00c2d21a3a7f45f37c 285 Gene3D G3DSA:3.30.1300.10 178 277 1.8E-32 T 13-10-2018 BMD_1372 8bd4845549aabb00c2d21a3a7f45f37c 285 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 7.0E-109 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BMD_1372 8bd4845549aabb00c2d21a3a7f45f37c 285 Gene3D G3DSA:3.40.50.620 1 177 1.5E-72 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BMD_1372 8bd4845549aabb00c2d21a3a7f45f37c 285 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 38.059 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BMD_1372 8bd4845549aabb00c2d21a3a7f45f37c 285 Pfam PF02569 Pantoate-beta-alanine ligase 2 277 6.9E-100 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BMD_2340 a6f4ddb4bed725f3cc241705b3dc92cf 92 TIGRFAM TIGR03829 YokU_near_AblA: uncharacterized protein, YokU family 2 90 2.9E-43 T 13-10-2018 IPR022451 Conserved hypothetical protein CHP03829, YokU BMD_2340 a6f4ddb4bed725f3cc241705b3dc92cf 92 TIGRFAM TIGR03831 YgiT_finger: YgiT-type zinc finger domain 3 50 1.4E-10 T 13-10-2018 IPR022453 Zinc finger, MqsA-type BMD_2340 a6f4ddb4bed725f3cc241705b3dc92cf 92 Pfam PF14122 YokU-like protein, putative antitoxin 2 88 1.3E-40 T 13-10-2018 IPR022451 Conserved hypothetical protein CHP03829, YokU BMD_3606 1195384b983f672ae6c55f349492ba1f 130 Gene3D G3DSA:3.10.180.10 3 121 1.2E-9 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3606 1195384b983f672ae6c55f349492ba1f 130 SUPERFAMILY SSF54593 9 127 9.3E-12 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_4833 fe63fcae9d8bb6545b01fc866e999b98 103 SMART SM00450 8 102 1.1E-19 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_4833 fe63fcae9d8bb6545b01fc866e999b98 103 Pfam PF00581 Rhodanese-like domain 8 97 1.7E-13 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_4833 fe63fcae9d8bb6545b01fc866e999b98 103 SUPERFAMILY SSF52821 3 97 5.5E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_4833 fe63fcae9d8bb6545b01fc866e999b98 103 Gene3D G3DSA:3.40.250.10 5 101 3.5E-28 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_0878 479b46ea6ba28f391d062d5d44400d1f 125 Gene3D G3DSA:3.10.129.10 1 125 4.5E-21 T 13-10-2018 BMD_0878 479b46ea6ba28f391d062d5d44400d1f 125 SUPERFAMILY SSF54637 3 122 1.19E-21 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_0878 479b46ea6ba28f391d062d5d44400d1f 125 Pfam PF13452 N-terminal half of MaoC dehydratase 59 114 1.4E-5 T 13-10-2018 IPR039569 N-terminal of MaoC-like dehydratase Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241|Reactome: R-HSA-9033500 BMD_3865 3f06e527151323a375c3f27ea8a8da09 649 Pfam PF12805 FUSC-like inner membrane protein yccS 96 246 2.5E-7 T 13-10-2018 IPR032692 Integral membrane protein YccS, N-terminal BMD_3865 3f06e527151323a375c3f27ea8a8da09 649 Pfam PF13515 Fusaric acid resistance protein-like 371 496 1.6E-23 T 13-10-2018 BMD_0414 149578c1a2bfa2b2bae81964418fc2b2 263 Pfam PF06182 ABC-2 family transporter protein 35 262 9.4E-54 T 13-10-2018 IPR010390 Protein of unknown function DUF990 BMD_4849 ae4423900fe397b11b726bdb0641512c 80 Pfam PF10763 Protein of unknown function (DUF2584) 1 80 5.8E-35 T 13-10-2018 IPR019699 Protein of unknown function DUF2584 BMD_4849 ae4423900fe397b11b726bdb0641512c 80 SUPERFAMILY SSF88697 1 80 8.95E-30 T 13-10-2018 IPR015947 PUA-like superfamily BMD_4849 ae4423900fe397b11b726bdb0641512c 80 Gene3D G3DSA:2.40.240.20 1 77 2.7E-33 T 13-10-2018 BMD_0995 31ae98231b1e6ede75bf47126abda787 257 Pfam PF07694 5TMR of 5TMR-LYT 1 125 1.1E-6 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 BMD_2899 32773d42aa1dcbc1a72a2e29d897eb8d 258 Pfam PF13346 ABC-2 family transporter protein 76 243 1.5E-6 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like BMD_1402 fbd1185b97fccbb7759aaa3aa2ba3845 181 TIGRFAM TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family 7 178 5.5E-41 T 13-10-2018 IPR014247 Sporulation lipoprotein YhcN/YlaJ GO:0030435 BMD_1402 fbd1185b97fccbb7759aaa3aa2ba3845 181 Pfam PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) 15 177 2.2E-25 T 13-10-2018 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like BMD_5092 df4eb51ed29c4f758a31f29461502a48 570 Pfam PF00474 Sodium:solute symporter family 99 498 3.6E-36 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BMD_5092 df4eb51ed29c4f758a31f29461502a48 570 Gene3D G3DSA:1.20.1730.10 85 553 1.7E-75 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily BMD_3103 33b5f0c1d128fa8402f449f1b6569fd3 56 Gene3D G3DSA:2.10.230.20 3 38 6.2E-7 T 13-10-2018 BMD_3103 33b5f0c1d128fa8402f449f1b6569fd3 56 SUPERFAMILY SSF57938 3 33 2.62E-6 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BMD_2007 750b4c8083d8228e9f1d9d788d5ef714 333 Pfam PF01757 Acyltransferase family 6 305 6.9E-19 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BMD_2125 ad2349a381f1aa4d602db2f53a991a18 303 SUPERFAMILY SSF103481 207 298 1.14E-10 T 13-10-2018 BMD_2125 ad2349a381f1aa4d602db2f53a991a18 303 Pfam PF00892 EamA-like transporter family 162 295 9.8E-27 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2125 ad2349a381f1aa4d602db2f53a991a18 303 Pfam PF00892 EamA-like transporter family 12 149 3.4E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2125 ad2349a381f1aa4d602db2f53a991a18 303 SUPERFAMILY SSF103481 49 152 4.58E-9 T 13-10-2018 BMD_2877 64afeded9e06ae3d5adafccffaed4767 274 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 5 267 59.868 T 13-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein BMD_2877 64afeded9e06ae3d5adafccffaed4767 274 Pfam PF03618 Kinase/pyrophosphorylase 7 262 7.8E-98 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 Pfam PF00375 Sodium:dicarboxylate symporter family 17 410 6.5E-101 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 44 59 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 Gene3D G3DSA:1.10.3860.10 7 425 2.0E-112 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 PRINTS PR00173 Glutamate-aspartate symporter signature 301 327 1.5E-17 T 13-10-2018 BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 PRINTS PR00173 Glutamate-aspartate symporter signature 15 35 1.5E-17 T 13-10-2018 BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 PRINTS PR00173 Glutamate-aspartate symporter signature 82 107 1.5E-17 T 13-10-2018 BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 PRINTS PR00173 Glutamate-aspartate symporter signature 153 175 1.5E-17 T 13-10-2018 BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 304 327 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BMD_3922 0231e3f6009bff43f40b485b92b326d8 450 SUPERFAMILY SSF118215 17 411 8.37E-107 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_1902 fbf32592887df306d8271e2640cc5f4e 188 SUPERFAMILY SSF47090 45 111 2.41E-19 T 13-10-2018 IPR036365 PGBD-like superfamily BMD_1902 fbf32592887df306d8271e2640cc5f4e 188 Pfam PF01471 Putative peptidoglycan binding domain 58 109 5.7E-15 T 13-10-2018 IPR002477 Peptidoglycan binding-like BMD_1902 fbf32592887df306d8271e2640cc5f4e 188 Gene3D G3DSA:1.10.101.10 39 119 6.9E-25 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BMD_3945 c13e4d0c5f461de934e6c8871d7ccfd4 269 Pfam PF13649 Methyltransferase domain 41 140 9.2E-16 T 13-10-2018 BMD_3945 c13e4d0c5f461de934e6c8871d7ccfd4 269 Gene3D G3DSA:3.40.50.150 2 269 4.4E-39 T 13-10-2018 BMD_3945 c13e4d0c5f461de934e6c8871d7ccfd4 269 SUPERFAMILY SSF53335 10 217 2.13E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_2178 d2a35a5963b0db9afacfadf704e987fe 303 SMART SM00382 30 210 2.8E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_2178 d2a35a5963b0db9afacfadf704e987fe 303 Gene3D G3DSA:3.40.50.300 1 231 2.7E-57 T 13-10-2018 BMD_2178 d2a35a5963b0db9afacfadf704e987fe 303 Pfam PF00005 ABC transporter 21 162 1.4E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_2178 d2a35a5963b0db9afacfadf704e987fe 303 SUPERFAMILY SSF52540 3 231 8.75E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2178 d2a35a5963b0db9afacfadf704e987fe 303 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BMD_1800 4d3e3069c2564be0d809970aeee9bae1 141 SMART SM00116 10 57 0.0066 T 13-10-2018 IPR000644 CBS domain BMD_1800 4d3e3069c2564be0d809970aeee9bae1 141 SMART SM00116 74 121 2.4E-14 T 13-10-2018 IPR000644 CBS domain BMD_1800 4d3e3069c2564be0d809970aeee9bae1 141 SUPERFAMILY SSF54631 1 116 1.05E-30 T 13-10-2018 BMD_1800 4d3e3069c2564be0d809970aeee9bae1 141 Gene3D G3DSA:3.10.580.10 1 121 1.7E-33 T 13-10-2018 BMD_1800 4d3e3069c2564be0d809970aeee9bae1 141 Pfam PF00571 CBS domain 4 53 4.9E-10 T 13-10-2018 IPR000644 CBS domain BMD_1800 4d3e3069c2564be0d809970aeee9bae1 141 Pfam PF00571 CBS domain 68 117 3.8E-12 T 13-10-2018 IPR000644 CBS domain BMD_2045 1d3572532b0d14cd3e82c03ac272fb83 202 SUPERFAMILY SSF53335 23 130 3.14E-15 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_2045 1d3572532b0d14cd3e82c03ac272fb83 202 Gene3D G3DSA:3.40.50.150 25 198 1.5E-13 T 13-10-2018 BMD_2045 1d3572532b0d14cd3e82c03ac272fb83 202 Pfam PF13679 Methyltransferase domain 46 101 2.1E-7 T 13-10-2018 IPR025714 Methyltransferase domain BMD_4365 0b3d574352f9610c07d5dc7b367ac74e 173 SUPERFAMILY SSF140663 2 125 1.44E-31 T 13-10-2018 IPR023203 TTHA0068-like superfamily BMD_4365 0b3d574352f9610c07d5dc7b367ac74e 173 Pfam PF03745 Domain of unknown function (DUF309) 7 65 6.2E-21 T 13-10-2018 IPR005500 Protein of unknown function DUF309 BMD_4365 0b3d574352f9610c07d5dc7b367ac74e 173 Gene3D G3DSA:1.20.58.500 5 101 5.0E-15 T 13-10-2018 BMD_3368 1ddbc21f2e426859554c71fedb088774 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3368 1ddbc21f2e426859554c71fedb088774 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3368 1ddbc21f2e426859554c71fedb088774 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3368 1ddbc21f2e426859554c71fedb088774 294 Pfam PF03466 LysR substrate binding domain 89 288 9.6E-49 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_3368 1ddbc21f2e426859554c71fedb088774 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 7.6E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_3368 1ddbc21f2e426859554c71fedb088774 294 SUPERFAMILY SSF53850 88 292 3.94E-42 T 13-10-2018 BMD_3368 1ddbc21f2e426859554c71fedb088774 294 Gene3D G3DSA:3.40.190.290 90 294 1.9E-54 T 13-10-2018 BMD_3368 1ddbc21f2e426859554c71fedb088774 294 SUPERFAMILY SSF46785 2 83 2.27E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3368 1ddbc21f2e426859554c71fedb088774 294 Gene3D G3DSA:1.10.10.10 1 84 6.0E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1309 867d1274f674872307f63a466e81cba2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1309 867d1274f674872307f63a466e81cba2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1309 867d1274f674872307f63a466e81cba2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1309 867d1274f674872307f63a466e81cba2 292 Pfam PF03466 LysR substrate binding domain 89 287 2.3E-35 T 13-10-2018 IPR005119 LysR, substrate-binding BMD_1309 867d1274f674872307f63a466e81cba2 292 SUPERFAMILY SSF53850 89 290 5.02E-31 T 13-10-2018 BMD_1309 867d1274f674872307f63a466e81cba2 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 6.5E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BMD_1309 867d1274f674872307f63a466e81cba2 292 Gene3D G3DSA:1.10.10.10 1 81 8.6E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_1309 867d1274f674872307f63a466e81cba2 292 Gene3D G3DSA:3.40.190.290 82 287 2.9E-66 T 13-10-2018 BMD_1309 867d1274f674872307f63a466e81cba2 292 SUPERFAMILY SSF46785 6 111 1.25E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_4147 ac03ad001da40ce76240fbd3d1a3d90a 263 Pfam PF01148 Cytidylyltransferase family 2 262 6.1E-75 T 13-10-2018 BMD_4147 ac03ad001da40ce76240fbd3d1a3d90a 263 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 222 248 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 BMD_1321 db0ae981e1aa51f6f654af80d2632acc 69 Pfam PF07288 Protein of unknown function (DUF1447) 2 68 1.0E-26 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 BMD_1321 db0ae981e1aa51f6f654af80d2632acc 69 ProDom PD055417 UPF0356 TRANSCRIPTIONAL REGULATOR SP0122 SH1862 BLI01669/BL01628 MW0973 LMOF2365_1049 BCE33L3734 SPYM3_1619/SPS0248 1 68 5.0E-18 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 BMD_1321 db0ae981e1aa51f6f654af80d2632acc 69 Gene3D G3DSA:3.10.20.730 1 58 1.5E-24 T 13-10-2018 BMD_1321 db0ae981e1aa51f6f654af80d2632acc 69 Hamap MF_01553 UPF0356 protein . 1 69 20.194 T 13-10-2018 IPR009907 Protein of unknown function DUF1447 BMD_2079 8adf01e6cf13d7f8104d391d9a1d998f 278 Gene3D G3DSA:1.10.3720.10 19 273 1.8E-67 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2079 8adf01e6cf13d7f8104d391d9a1d998f 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 267 3.6E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2079 8adf01e6cf13d7f8104d391d9a1d998f 278 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 14 273 4.9E-125 T 13-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 BMD_2079 8adf01e6cf13d7f8104d391d9a1d998f 278 SUPERFAMILY SSF161098 21 267 3.92E-56 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2079 8adf01e6cf13d7f8104d391d9a1d998f 278 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 8 269 6.4E-94 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BMD_3185 6150b53292f2b842b6c7652dce897423 294 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 231 285 1.2E-22 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_3185 6150b53292f2b842b6c7652dce897423 294 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 24 225 9.6E-65 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3185 6150b53292f2b842b6c7652dce897423 294 Gene3D G3DSA:3.30.70.120 203 278 1.1E-23 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_3185 6150b53292f2b842b6c7652dce897423 294 PIRSF PIRSF006483 3 293 3.8E-96 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3430 1cbc753f013977e282457e955e44ec41 168 Pfam PF00005 ABC transporter 10 43 1.5E-5 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BMD_3430 1cbc753f013977e282457e955e44ec41 168 SUPERFAMILY SSF52540 9 108 5.1E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3430 1cbc753f013977e282457e955e44ec41 168 Gene3D G3DSA:3.40.50.300 1 132 2.7E-22 T 13-10-2018 BMD_4654 3eb2fc89b82528f41a192f8d111b842c 293 Gene3D G3DSA:2.40.10.340 121 275 4.4E-53 T 13-10-2018 BMD_4654 3eb2fc89b82528f41a192f8d111b842c 293 Gene3D G3DSA:2.40.10.350 182 264 4.4E-53 T 13-10-2018 BMD_4654 3eb2fc89b82528f41a192f8d111b842c 293 PIRSF PIRSF038471 2 291 2.5E-63 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BMD_4654 3eb2fc89b82528f41a192f8d111b842c 293 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 7 281 4.0E-66 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BMD_4654 3eb2fc89b82528f41a192f8d111b842c 293 Pfam PF04085 rod shape-determining protein MreC 123 276 1.7E-44 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BMD_4281 618f1960b837361a31da7d21aaad7ed9 57 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 5.4E-29 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4281 618f1960b837361a31da7d21aaad7ed9 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 20.404 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_4281 618f1960b837361a31da7d21aaad7ed9 57 SUPERFAMILY SSF57829 1 55 2.99E-22 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BMD_4281 618f1960b837361a31da7d21aaad7ed9 57 Pfam PF01783 Ribosomal L32p protein family 2 57 4.1E-28 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BMD_1466 9d39e72441386cc07772c9eba3d67029 175 Gene3D G3DSA:3.40.630.30 1 167 2.5E-43 T 13-10-2018 BMD_1466 9d39e72441386cc07772c9eba3d67029 175 SUPERFAMILY SSF55729 2 145 1.28E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1466 9d39e72441386cc07772c9eba3d67029 175 Pfam PF13302 Acetyltransferase (GNAT) domain 2 141 4.0E-29 T 13-10-2018 IPR000182 GNAT domain BMD_3873 deab11a1fe19d299e70dbb49fdf2116e 184 Pfam PF04982 HPP family 64 180 3.9E-40 T 13-10-2018 IPR007065 HPP BMD_3382 637f9bccfe0897005aa79cd7aa041c57 80 Pfam PF10676 Spore germination protein gerPA/gerPF 5 71 3.2E-12 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 253 1.2E-102 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 SUPERFAMILY SSF51556 2 255 9.35E-100 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 PIRSF PIRSF005902 1 256 8.2E-95 T 13-10-2018 IPR001130 TatD family GO:0016788 BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 189 205 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 Pfam PF01026 TatD related DNase 3 252 3.2E-92 T 13-10-2018 IPR001130 TatD family GO:0016788 BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 Gene3D G3DSA:3.20.20.140 1 256 7.7E-115 T 13-10-2018 BMD_0056 b6d7a7a4382b55c9dbe949ff2ac51c6b 256 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BMD_1536 bc0fa00bf0465a4dc48d8be06be2f8e4 484 Pfam PF02435 Levansucrase/Invertase 38 479 2.9E-153 T 13-10-2018 IPR003469 Glycoside hydrolase, family 68 GO:0009758|GO:0050053 BMD_1536 bc0fa00bf0465a4dc48d8be06be2f8e4 484 SUPERFAMILY SSF75005 38 482 7.14E-100 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_1536 bc0fa00bf0465a4dc48d8be06be2f8e4 484 Gene3D G3DSA:2.115.10.20 29 477 2.6E-194 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 Gene3D G3DSA:1.10.3860.10 1 279 6.3E-103 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 PRINTS PR00173 Glutamate-aspartate symporter signature 221 241 5.8E-36 T 13-10-2018 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 PRINTS PR00173 Glutamate-aspartate symporter signature 57 76 5.8E-36 T 13-10-2018 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 PRINTS PR00173 Glutamate-aspartate symporter signature 10 32 5.8E-36 T 13-10-2018 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 PRINTS PR00173 Glutamate-aspartate symporter signature 159 185 5.8E-36 T 13-10-2018 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 5.8E-36 T 13-10-2018 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 PRINTS PR00173 Glutamate-aspartate symporter signature 83 102 5.8E-36 T 13-10-2018 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 SUPERFAMILY SSF118215 1 267 1.11E-89 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_4031 f3cf0b9ef6641d1a49cc781e001c1891 280 Pfam PF00375 Sodium:dicarboxylate symporter family 1 266 1.9E-99 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_1113 0b877637e8f8f7f46f20e57d65a4d6e3 428 Gene3D G3DSA:3.20.20.80 59 342 3.4E-55 T 13-10-2018 BMD_1113 0b877637e8f8f7f46f20e57d65a4d6e3 428 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 62 301 3.2E-16 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 BMD_1113 0b877637e8f8f7f46f20e57d65a4d6e3 428 SUPERFAMILY SSF51445 48 342 5.08E-61 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_3627 6a806303fd34f188247cc5294e49b79b 65 SUPERFAMILY SSF52788 1 63 3.66E-10 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily BMD_3627 6a806303fd34f188247cc5294e49b79b 65 Gene3D G3DSA:3.40.50.2300 1 65 1.5E-11 T 13-10-2018 BMD_2140 7d5ec771a8e3997875927c82683388cd 257 Pfam PF01925 Sulfite exporter TauE/SafE 12 244 3.5E-39 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BMD_2779 66e46a17be65983b6fee9b60d443687a 144 Pfam PF13798 Protein of unknown function with PCYCGC motif 22 142 1.3E-59 T 13-10-2018 IPR025673 Protein of unknown function with PCYCGC motif BMD_5060 3257a1eb698818f4022a4d16ad9e21e7 175 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 115 143 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BMD_5060 3257a1eb698818f4022a4d16ad9e21e7 175 Gene3D G3DSA:2.160.10.10 43 173 8.3E-29 T 13-10-2018 BMD_5060 3257a1eb698818f4022a4d16ad9e21e7 175 SUPERFAMILY SSF51161 10 166 9.7E-34 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily BMD_5060 3257a1eb698818f4022a4d16ad9e21e7 175 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 107 140 6.0E-11 T 13-10-2018 IPR001451 Hexapeptide repeat BMD_0892 3df26a1c319acccf2729b3dcfba18d04 121 SUPERFAMILY SSF46785 7 104 6.67E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_0892 3df26a1c319acccf2729b3dcfba18d04 121 Pfam PF01638 HxlR-like helix-turn-helix 18 106 1.5E-37 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_0892 3df26a1c319acccf2729b3dcfba18d04 121 Gene3D G3DSA:1.10.10.10 2 118 6.7E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_4708 4e8c5df0976aef0e49633624d3430a15 149 SUPERFAMILY SSF54637 16 147 6.52E-35 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_4708 4e8c5df0976aef0e49633624d3430a15 149 Gene3D G3DSA:3.10.129.10 6 149 8.8E-35 T 13-10-2018 BMD_4708 4e8c5df0976aef0e49633624d3430a15 149 Pfam PF13279 Thioesterase-like superfamily 25 143 1.6E-13 T 13-10-2018 BMD_1085 0a08db66cdcbda7ab5233e60808cb684 93 Pfam PF11553 Protein of unknown function (DUF3231) 2 67 5.5E-12 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_3105 b732fea08f0c7bea85481b3139f875de 104 SUPERFAMILY SSF46785 4 101 2.69E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_3105 b732fea08f0c7bea85481b3139f875de 104 SMART SM00418 5 102 1.4E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BMD_3105 b732fea08f0c7bea85481b3139f875de 104 Gene3D G3DSA:1.10.10.10 1 104 8.8E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3105 b732fea08f0c7bea85481b3139f875de 104 Pfam PF12840 Helix-turn-helix domain 5 82 2.2E-12 T 13-10-2018 BMD_0579 b3652c3df15052e87ac99afb2351d350 417 Pfam PF12698 ABC-2 family transporter protein 19 386 4.5E-55 T 13-10-2018 BMD_1716 74a43500870dbef7f19c713890fa91fa 348 Pfam PF03601 Conserved hypothetical protein 698 30 332 1.1E-77 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 BMD_1268 0d1d5775300eeae7c211ef8696b31e62 432 Pfam PF00860 Permease family 20 390 2.7E-27 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_2985 118f3dfd6c6103fbc3a8d7331477ce07 269 Pfam PF01774 UreD urease accessory protein 44 244 1.9E-46 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 BMD_2985 118f3dfd6c6103fbc3a8d7331477ce07 269 Hamap MF_01384 Urease accessory protein UreD [ureD]. 3 255 25.237 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 BMD_0369 8044a745c5724faad4fd928d6c1d097c 248 Pfam PF00188 Cysteine-rich secretory protein family 132 245 6.0E-23 T 13-10-2018 IPR014044 CAP domain BMD_0369 8044a745c5724faad4fd928d6c1d097c 248 Gene3D G3DSA:3.40.33.10 20 246 1.1E-67 T 13-10-2018 IPR035940 CAP superfamily BMD_0369 8044a745c5724faad4fd928d6c1d097c 248 TIGRFAM TIGR02909 spore_YkwD: uncharacterized protein, YkwD family 124 247 1.0E-61 T 13-10-2018 IPR014258 CAP domain, YkwD-like BMD_0369 8044a745c5724faad4fd928d6c1d097c 248 SUPERFAMILY SSF55797 124 245 4.58E-27 T 13-10-2018 IPR035940 CAP superfamily BMD_2604 9749d678da3b6d4a7df0f6d87a612c03 255 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 249 1.1E-78 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 BMD_2604 9749d678da3b6d4a7df0f6d87a612c03 255 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 244 2.6E-63 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 BMD_2488 b686238516faa997b0a55313c8167402 179 SUPERFAMILY SSF52218 1 152 3.06E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2488 b686238516faa997b0a55313c8167402 179 Gene3D G3DSA:3.40.50.360 1 172 1.1E-43 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2488 b686238516faa997b0a55313c8167402 179 Pfam PF03358 NADPH-dependent FMN reductase 1 135 1.9E-30 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BMD_1908 a795711f02f3968bd59330ab7a343edf 132 SUPERFAMILY SSF54637 7 129 4.19E-30 T 13-10-2018 IPR029069 HotDog domain superfamily BMD_1908 a795711f02f3968bd59330ab7a343edf 132 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 13 125 2.2E-23 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 BMD_1908 a795711f02f3968bd59330ab7a343edf 132 Pfam PF03061 Thioesterase superfamily 42 118 5.4E-14 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BMD_1908 a795711f02f3968bd59330ab7a343edf 132 Gene3D G3DSA:3.10.129.10 2 132 3.1E-39 T 13-10-2018 BMD_1946 8e33449747b1d54fef13638fea0bd1a2 260 Pfam PF04445 Putative SAM-dependent methyltransferase 45 229 2.2E-13 T 13-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 BMD_1946 8e33449747b1d54fef13638fea0bd1a2 260 Gene3D G3DSA:3.40.50.150 70 255 2.9E-38 T 13-10-2018 BMD_1946 8e33449747b1d54fef13638fea0bd1a2 260 SUPERFAMILY SSF53335 4 258 6.8E-54 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 Gene3D G3DSA:2.40.30.10 192 360 1.7E-122 T 13-10-2018 BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 SUPERFAMILY SSF160996 193 361 3.14E-47 T 13-10-2018 BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 Gene3D G3DSA:1.10.8.260 279 343 1.7E-122 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 Pfam PF03486 HI0933-like protein 3 413 1.2E-153 T 13-10-2018 BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 5 412 7.2E-143 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 SUPERFAMILY SSF51905 1 415 1.42E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 Gene3D G3DSA:3.50.50.60 6 409 1.7E-122 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 1.9E-5 T 13-10-2018 BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.9E-5 T 13-10-2018 BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.1E-10 T 13-10-2018 BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 420 2.1E-10 T 13-10-2018 BMD_4831 507197867edb9ccc0b2c6068f2abef61 423 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 168 2.1E-10 T 13-10-2018 BMD_2540 92c1521c628f9d1b853ed929c2f01c40 475 SUPERFAMILY SSF56024 62 271 1.85E-14 T 13-10-2018 BMD_2540 92c1521c628f9d1b853ed929c2f01c40 475 Gene3D G3DSA:3.30.870.10 265 442 4.7E-20 T 13-10-2018 BMD_2540 92c1521c628f9d1b853ed929c2f01c40 475 SUPERFAMILY SSF56024 289 461 1.37E-15 T 13-10-2018 BMD_2540 92c1521c628f9d1b853ed929c2f01c40 475 Pfam PF13091 PLD-like domain 296 438 7.9E-23 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BMD_2365 2db0e161b0da97f0d17820edbca9bba9 889 SUPERFAMILY SSF82866 118 333 9.81E-34 T 13-10-2018 BMD_2365 2db0e161b0da97f0d17820edbca9bba9 889 SUPERFAMILY SSF82866 657 877 6.41E-29 T 13-10-2018 BMD_2365 2db0e161b0da97f0d17820edbca9bba9 889 Pfam PF03176 MMPL family 537 879 3.7E-46 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 BMD_2365 2db0e161b0da97f0d17820edbca9bba9 889 Pfam PF03176 MMPL family 41 358 3.6E-72 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 BMD_2365 2db0e161b0da97f0d17820edbca9bba9 889 Gene3D G3DSA:1.20.1640.10 133 339 2.3E-11 T 13-10-2018 BMD_3722 2fb41cd3752fa94646c2fb4205a42bc1 60 Pfam PF08863 YolD-like protein 1 59 5.7E-9 T 13-10-2018 IPR014962 YolD-like protein BMD_2341 73fb156e26b73fcdab4300d440d0bfbf 493 PIRSF PIRSF006060 1 492 2.4E-87 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2341 73fb156e26b73fcdab4300d440d0bfbf 493 Pfam PF00324 Amino acid permease 28 480 3.0E-136 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_2341 73fb156e26b73fcdab4300d440d0bfbf 493 ProSitePatterns PS00218 Amino acid permeases signature. 53 84 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_2341 73fb156e26b73fcdab4300d440d0bfbf 493 Gene3D G3DSA:1.20.1740.10 18 485 3.5E-60 T 13-10-2018 BMD_3592 b180187c179878ab37a51a25fc4e8fa7 161 Gene3D G3DSA:1.25.40.10 46 154 1.1E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3592 b180187c179878ab37a51a25fc4e8fa7 161 Pfam PF12688 Tetratrico peptide repeat 39 155 6.7E-11 T 13-10-2018 BMD_3592 b180187c179878ab37a51a25fc4e8fa7 161 SUPERFAMILY SSF48452 6 155 4.55E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_3592 b180187c179878ab37a51a25fc4e8fa7 161 Pfam PF13174 Tetratricopeptide repeat 8 33 0.078 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BMD_2330 8ff9f597fc29fd1c778391b40a95060a 109 Pfam PF12986 Domain of unknown function (DUF3870) 8 100 5.3E-31 T 13-10-2018 IPR024617 Domain of unknown function DUF3870 BMD_3776 ac3bb5a4058e7b625f790b9f1c019f16 189 Pfam PF14417 MEDS: MEthanogen/methylotroph, DcmR Sensory domain 16 169 2.3E-17 T 13-10-2018 IPR025847 MEDS domain BMD_2287 6bf32a458b443abd9d34d80652841a9f 223 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 4 220 5.1E-55 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_2287 6bf32a458b443abd9d34d80652841a9f 223 SUPERFAMILY SSF51569 2 221 1.36E-72 T 13-10-2018 BMD_2287 6bf32a458b443abd9d34d80652841a9f 223 Hamap MF_00494 Probable transaldolase [tal]. 2 222 43.852 T 13-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_2287 6bf32a458b443abd9d34d80652841a9f 223 Gene3D G3DSA:3.20.20.70 1 223 1.3E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2287 6bf32a458b443abd9d34d80652841a9f 223 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 2 220 1.1E-80 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BMD_2287 6bf32a458b443abd9d34d80652841a9f 223 ProSitePatterns PS01054 Transaldolase signature 1. 25 33 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_2287 6bf32a458b443abd9d34d80652841a9f 223 ProSitePatterns PS00958 Transaldolase active site. 88 105 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BMD_4299 eb7322d849c9387a4f2c87085f16da14 187 Pfam PF10673 Protein of unknown function (DUF2487) 44 185 2.2E-48 T 13-10-2018 IPR019615 Protein of unknown function DUF2487 BMD_4694 087b72c5a3dd50d2a750acab62ea5916 204 Pfam PF08000 Bacterial PH domain 11 132 6.0E-37 T 13-10-2018 IPR012544 Bacterial Pleckstrin homology domain BMD_4694 087b72c5a3dd50d2a750acab62ea5916 204 Gene3D G3DSA:1.10.287.210 116 204 8.3E-31 T 13-10-2018 BMD_4694 087b72c5a3dd50d2a750acab62ea5916 204 Pfam PF11724 YvbH-like oligomerisation region 144 204 2.2E-23 T 13-10-2018 IPR021722 Uncharacterised domain YvbH-like, oligomerisation domain BMD_4694 087b72c5a3dd50d2a750acab62ea5916 204 SUPERFAMILY SSF50729 14 203 2.7E-67 T 13-10-2018 BMD_4694 087b72c5a3dd50d2a750acab62ea5916 204 Gene3D G3DSA:2.30.29.50 12 115 3.5E-46 T 13-10-2018 IPR037063 Bacterial Pleckstrin homology domain superfamily BMD_3365 9fc2bdca7368a9df6ac1d45c7a45e912 205 PIRSF PIRSF006324 1 204 1.7E-60 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_3365 9fc2bdca7368a9df6ac1d45c7a45e912 205 Pfam PF01810 LysE type translocator 12 201 1.2E-38 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_4468 c1d7982de701a0feea43141bbead5f11 127 SUPERFAMILY SSF52821 10 121 2.1E-32 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_4468 c1d7982de701a0feea43141bbead5f11 127 SMART SM00450 30 125 1.4E-25 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_4468 c1d7982de701a0feea43141bbead5f11 127 Pfam PF00581 Rhodanese-like domain 43 120 1.7E-18 T 13-10-2018 IPR001763 Rhodanese-like domain BMD_4468 c1d7982de701a0feea43141bbead5f11 127 Gene3D G3DSA:3.40.250.10 31 127 8.6E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily BMD_2971 d56c606df678ee927e884b8a6632b12b 211 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 2 198 1.8E-19 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_2971 d56c606df678ee927e884b8a6632b12b 211 SMART SM00934 2 201 3.5E-30 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BMD_2971 d56c606df678ee927e884b8a6632b12b 211 Gene3D G3DSA:3.20.20.70 1 207 1.8E-64 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_2971 d56c606df678ee927e884b8a6632b12b 211 SUPERFAMILY SSF51366 7 206 2.33E-29 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_0849 e670d74d5dedf432112ea51ece1f65b1 311 Pfam PF02574 Homocysteine S-methyltransferase 14 307 2.0E-83 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 BMD_0849 e670d74d5dedf432112ea51ece1f65b1 311 Gene3D G3DSA:3.20.20.330 1 307 7.2E-113 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BMD_0849 e670d74d5dedf432112ea51ece1f65b1 311 SUPERFAMILY SSF82282 10 310 6.67E-87 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 Pfam PF02056 Family 4 glycosyl hydrolase 2 183 6.0E-70 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 193 408 6.0E-49 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 SUPERFAMILY SSF51735 1 163 1.54E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 Gene3D G3DSA:3.40.50.720 1 166 2.2E-68 T 13-10-2018 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 SUPERFAMILY SSF56327 169 435 9.35E-90 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 Gene3D G3DSA:3.90.110.10 167 438 5.5E-99 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 8.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 PRINTS PR00732 Glycosyl hydrolase family 4 signature 163 174 8.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 PRINTS PR00732 Glycosyl hydrolase family 4 signature 189 201 8.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 PRINTS PR00732 Glycosyl hydrolase family 4 signature 73 89 8.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 PRINTS PR00732 Glycosyl hydrolase family 4 signature 94 107 8.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 PRINTS PR00732 Glycosyl hydrolase family 4 signature 108 128 8.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 PRINTS PR00732 Glycosyl hydrolase family 4 signature 137 154 8.8E-49 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BMD_1020 497be86bf5ccb9ffaaa297d9e334474c 438 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 137 168 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 BMD_1492 807099cf6aa48e460f801e8af809b73b 441 Pfam PF02447 GntP family permease 5 438 4.5E-143 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_1492 807099cf6aa48e460f801e8af809b73b 441 PIRSF PIRSF002746 1 441 1.5E-143 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_1492 807099cf6aa48e460f801e8af809b73b 441 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 440 5.2E-136 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_5186 4d0fb25748aced9e7b060a45ae71f85f 224 Pfam PF13921 Myb-like DNA-binding domain 8 62 5.2E-5 T 13-10-2018 BMD_5186 4d0fb25748aced9e7b060a45ae71f85f 224 TIGRFAM TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family 3 78 6.0E-44 T 13-10-2018 IPR014243 Transcription factor, RsfA BMD_3886 157c397a2d19b0964111019338c8f511 469 Pfam PF11738 Protein of unknown function (DUF3298) 153 219 2.1E-9 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 BMD_3886 157c397a2d19b0964111019338c8f511 469 Gene3D G3DSA:3.90.640.20 151 237 4.6E-16 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily BMD_3886 157c397a2d19b0964111019338c8f511 469 Gene3D G3DSA:3.30.565.40 25 149 1.7E-8 T 13-10-2018 BMD_3886 157c397a2d19b0964111019338c8f511 469 Pfam PF01522 Polysaccharide deacetylase 273 393 4.1E-34 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_3886 157c397a2d19b0964111019338c8f511 469 Gene3D G3DSA:3.20.20.370 238 465 7.0E-65 T 13-10-2018 BMD_3886 157c397a2d19b0964111019338c8f511 469 SUPERFAMILY SSF88713 261 456 6.01E-58 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_1208 a2007a9dae44a32cd379d7be50ba1acb 271 Pfam PF03741 Integral membrane protein TerC family 15 207 1.9E-51 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BMD_1208 a2007a9dae44a32cd379d7be50ba1acb 271 TIGRFAM TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family 12 249 4.1E-93 T 13-10-2018 IPR022493 Integral membrane YkoY BMD_1208 a2007a9dae44a32cd379d7be50ba1acb 271 SUPERFAMILY SSF103473 11 245 2.22E-8 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1208 a2007a9dae44a32cd379d7be50ba1acb 271 Gene3D G3DSA:1.20.1250.20 4 250 1.2E-7 T 13-10-2018 BMD_0595 0df10b27d12215d2e2719b6d2701bcc7 239 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 9 234 1.0E-56 T 13-10-2018 BMD_0595 0df10b27d12215d2e2719b6d2701bcc7 239 Pfam PF12787 EcsC protein family 7 234 2.5E-75 T 13-10-2018 IPR024787 EcsC protein BMD_3800 b397575767045fbaa411a6dc4d7b5180 179 Pfam PF09965 Uncharacterized protein conserved in bacteria (DUF2199) 21 164 3.2E-45 T 13-10-2018 IPR018697 Protein of unknown function DUF2199 BMD_1325 f74ab9f7c7842e8c5cdd02fd87aaf7a4 221 SUPERFAMILY SSF140423 23 210 1.15E-44 T 13-10-2018 IPR036785 YkyA-like superfamily BMD_1325 f74ab9f7c7842e8c5cdd02fd87aaf7a4 221 Pfam PF10368 Putative cell-wall binding lipoprotein 13 213 6.0E-58 T 13-10-2018 IPR019454 Putative cell-wall binding lipoprotein YkyA-like BMD_1325 f74ab9f7c7842e8c5cdd02fd87aaf7a4 221 Gene3D G3DSA:1.20.120.570 12 210 1.2E-48 T 13-10-2018 IPR036785 YkyA-like superfamily BMD_3390 01c547971b75fdb225b8007152365f5e 89 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 61 80 1.3E-6 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3390 01c547971b75fdb225b8007152365f5e 89 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 57 79 5.1E-8 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3713 12bc2c929c83412ac2b6919abada7112 185 Pfam PF12784 PD-(D/E)XK nuclease family transposase 2 138 3.6E-27 T 13-10-2018 BMD_3713 12bc2c929c83412ac2b6919abada7112 185 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 1 182 2.9E-37 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA BMD_0896 706607b1bc6149366c967a4e544ca57e 656 Pfam PF07670 Nucleoside recognition 501 624 2.1E-32 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_0896 706607b1bc6149366c967a4e544ca57e 656 Pfam PF07670 Nucleoside recognition 340 434 5.8E-15 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_0896 706607b1bc6149366c967a4e544ca57e 656 SUPERFAMILY SSF52540 3 174 7.54E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_0896 706607b1bc6149366c967a4e544ca57e 656 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 8 621 7.2E-185 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 BMD_0896 706607b1bc6149366c967a4e544ca57e 656 Pfam PF07664 Ferrous iron transport protein B C terminus 444 496 8.5E-20 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 BMD_0896 706607b1bc6149366c967a4e544ca57e 656 Gene3D G3DSA:3.40.50.300 1 190 5.2E-37 T 13-10-2018 BMD_0896 706607b1bc6149366c967a4e544ca57e 656 Pfam PF02421 Ferrous iron transport protein B 3 154 5.1E-54 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 BMD_4403 b683b130219e5c06308502361d3950d6 452 SUPERFAMILY SSF53383 20 449 1.02E-122 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4403 b683b130219e5c06308502361d3950d6 452 Gene3D G3DSA:3.40.640.10 66 340 2.6E-148 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4403 b683b130219e5c06308502361d3950d6 452 PIRSF PIRSF000521 23 451 1.0E-38 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4403 b683b130219e5c06308502361d3950d6 452 Gene3D G3DSA:3.90.1150.10 15 447 2.6E-148 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4403 b683b130219e5c06308502361d3950d6 452 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 251 288 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_4403 b683b130219e5c06308502361d3950d6 452 Pfam PF00202 Aminotransferase class-III 30 447 3.0E-108 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 Gene3D G3DSA:1.20.1250.20 6 458 8.3E-132 T 13-10-2018 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 4 451 6.7E-119 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 Pfam PF00083 Sugar (and other) transporter 15 455 4.9E-118 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 SUPERFAMILY SSF103473 9 452 2.22E-79 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 ProSitePatterns PS00217 Sugar transport proteins signature 2. 112 137 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 PRINTS PR00171 Sugar transporter signature 22 32 4.3E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 PRINTS PR00171 Sugar transporter signature 379 391 4.3E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 PRINTS PR00171 Sugar transporter signature 267 277 4.3E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 PRINTS PR00171 Sugar transporter signature 107 126 4.3E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_3470 14e6aa8ede00f153ad7b2f999afb7559 472 PRINTS PR00171 Sugar transporter signature 356 377 4.3E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BMD_0909 2d42d646c3ac10ab9ea6e100a8dcf789 113 Pfam PF04341 Protein of unknown function, DUF485 25 108 7.1E-25 T 13-10-2018 IPR007436 Protein of unknown function DUF485 BMD_0382 45d50efb3eef4174b5a7e7f50734dcf3 138 SUPERFAMILY SSF50475 5 136 7.11E-29 T 13-10-2018 BMD_0382 45d50efb3eef4174b5a7e7f50734dcf3 138 Pfam PF16242 Pyridoxamine 5'-phosphate oxidase like 7 134 1.4E-15 T 13-10-2018 IPR038725 General stress protein, FMN-binding split barrel domain BMD_0382 45d50efb3eef4174b5a7e7f50734dcf3 138 Gene3D G3DSA:2.30.110.10 4 137 4.4E-37 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BMD_2523 1809f17afcd1f5a498a4a743d59b2cb8 125 Pfam PF09515 Thiamine transporter protein (Thia_YuaJ) 1 117 7.3E-41 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 BMD_2523 1809f17afcd1f5a498a4a743d59b2cb8 125 Gene3D G3DSA:1.10.1760.20 1 123 5.5E-34 T 13-10-2018 BMD_2523 1809f17afcd1f5a498a4a743d59b2cb8 125 TIGRFAM TIGR02357 ECF_ThiT_YuaJ: energy-coupled thiamine transporter ThiT 1 120 1.9E-41 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 BMD_2829 26d9a5148c823aa4e8ffae9e4ff72220 427 Gene3D G3DSA:3.40.190.10 60 363 2.3E-88 T 13-10-2018 BMD_2829 26d9a5148c823aa4e8ffae9e4ff72220 427 SUPERFAMILY SSF53850 23 426 6.34E-69 T 13-10-2018 BMD_2829 26d9a5148c823aa4e8ffae9e4ff72220 427 Gene3D G3DSA:3.40.190.10 146 417 2.3E-88 T 13-10-2018 BMD_2829 26d9a5148c823aa4e8ffae9e4ff72220 427 Pfam PF13416 Bacterial extracellular solute-binding protein 59 365 7.9E-50 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_4856 650b9b9a329608cfa01b18373458d126 141 Pfam PF05105 Bacteriophage holin family 28 137 1.3E-38 T 13-10-2018 IPR006480 Bacteriophage holin family BMD_4856 650b9b9a329608cfa01b18373458d126 141 TIGRFAM TIGR01593 holin_tox_secr: toxin secretion/phage lysis holin 22 140 5.0E-31 T 13-10-2018 IPR006480 Bacteriophage holin family BMD_1813 06466b0e556ae6a664840dce0f5cafda 311 Pfam PF03773 Predicted permease 23 306 7.1E-69 T 13-10-2018 IPR005524 Predicted permease DUF318 BMD_1898 b4fba100a29dd7ae6b5db4651cd72021 185 Gene3D G3DSA:2.30.30.1210 39 185 4.1E-72 T 13-10-2018 BMD_1898 b4fba100a29dd7ae6b5db4651cd72021 185 Pfam PF07563 Protein of unknown function (DUF1541) 64 115 2.1E-27 T 13-10-2018 IPR011438 Domain of unknown function DUF1541 BMD_1898 b4fba100a29dd7ae6b5db4651cd72021 185 Pfam PF07563 Protein of unknown function (DUF1541) 128 179 4.7E-30 T 13-10-2018 IPR011438 Domain of unknown function DUF1541 BMD_0974 d9d71fc0790b03c5308373e9dbb35292 206 Pfam PF09335 SNARE associated Golgi protein 47 161 8.9E-15 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_2664 972285557f5fea1ddb02b085f7272799 168 Pfam PF14434 Immunity protein Imm6 14 127 4.1E-26 T 13-10-2018 IPR025674 Immunity protein Imm6 BMD_4790 b0759005dbb761154c026dae5ec61337 380 Gene3D G3DSA:3.90.1150.10 2 368 1.1E-133 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BMD_4790 b0759005dbb761154c026dae5ec61337 380 SUPERFAMILY SSF53383 1 374 3.86E-101 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BMD_4790 b0759005dbb761154c026dae5ec61337 380 PIRSF PIRSF005572 1 379 2.1E-117 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BMD_4790 b0759005dbb761154c026dae5ec61337 380 Gene3D G3DSA:1.10.260.50 13 277 1.1E-133 T 13-10-2018 BMD_4790 b0759005dbb761154c026dae5ec61337 380 Gene3D G3DSA:3.40.640.10 59 234 1.1E-133 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BMD_4790 b0759005dbb761154c026dae5ec61337 380 Pfam PF00266 Aminotransferase class-V 2 361 1.7E-80 T 13-10-2018 IPR000192 Aminotransferase class V domain BMD_3210 a5d5acd6f1c8cf51b32cb4e1e467d6ee 359 Pfam PF13367 Protease prsW family 179 332 1.6E-20 T 13-10-2018 IPR026898 Protease PrsW GO:0008233 BMD_3210 a5d5acd6f1c8cf51b32cb4e1e467d6ee 359 Pfam PF13240 zinc-ribbon domain 2 23 6.6E-6 T 13-10-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 BMD_4558 f66e3135c71a0d9c2d315203a8d3699c 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 7.2E-30 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4558 f66e3135c71a0d9c2d315203a8d3699c 88 Pfam PF01649 Ribosomal protein S20 2 84 1.9E-27 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4558 f66e3135c71a0d9c2d315203a8d3699c 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 14 88 1.0E-22 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4558 f66e3135c71a0d9c2d315203a8d3699c 88 SUPERFAMILY SSF46992 3 86 6.02E-30 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4558 f66e3135c71a0d9c2d315203a8d3699c 88 Gene3D G3DSA:1.20.58.110 1 87 3.3E-30 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4558 f66e3135c71a0d9c2d315203a8d3699c 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.163 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BMD_4215 166d26aa665a91f3d0baa8f08c35ad4f 342 Pfam PF13303 Phosphotransferase system, EIIC 28 335 2.9E-62 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BMD_1279 8c1da232059768f8b46283ebab6b07d1 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 5.4E-60 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1279 8c1da232059768f8b46283ebab6b07d1 156 SUPERFAMILY SSF52121 4 154 1.07E-64 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1279 8c1da232059768f8b46283ebab6b07d1 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 2.5E-62 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1279 8c1da232059768f8b46283ebab6b07d1 156 Gene3D G3DSA:3.40.50.960 2 155 1.8E-66 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1279 8c1da232059768f8b46283ebab6b07d1 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 154 32.053 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BMD_1151 ad1dd7d3d92d8d3076700011feb9b45f 123 Pfam PF07238 PilZ domain 39 106 3.9E-9 T 13-10-2018 IPR009875 PilZ domain GO:0035438 BMD_1151 ad1dd7d3d92d8d3076700011feb9b45f 123 SUPERFAMILY SSF141371 37 105 4.51E-5 T 13-10-2018 BMD_5127 096a7b45f9de793eebb11f8f6a06f6bb 87 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 41 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BMD_5127 096a7b45f9de793eebb11f8f6a06f6bb 87 Gene3D G3DSA:1.10.10.60 1 87 4.1E-42 T 13-10-2018 BMD_5127 096a7b45f9de793eebb11f8f6a06f6bb 87 Pfam PF12116 Stage III sporulation protein D 2 82 2.8E-41 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID BMD_5127 096a7b45f9de793eebb11f8f6a06f6bb 87 TIGRFAM TIGR02844 spore_III_D: sporulation transcriptional regulator SpoIIID 2 81 2.6E-46 T 13-10-2018 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID BMD_0465 4744776e2f294255d1f42204e0388908 446 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 150 167 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 BMD_0465 4744776e2f294255d1f42204e0388908 446 SUPERFAMILY SSF53850 39 437 2.09E-86 T 13-10-2018 BMD_0465 4744776e2f294255d1f42204e0388908 446 Gene3D G3DSA:3.40.190.10 43 395 2.2E-128 T 13-10-2018 BMD_0465 4744776e2f294255d1f42204e0388908 446 Gene3D G3DSA:3.40.190.10 155 434 2.2E-128 T 13-10-2018 BMD_0465 4744776e2f294255d1f42204e0388908 446 Pfam PF13416 Bacterial extracellular solute-binding protein 57 380 4.5E-56 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_1387 546b1186e2ba55af2fb2da097b5546a0 116 Gene3D G3DSA:1.20.120.440 1 116 5.0E-36 T 13-10-2018 IPR023351 YppE-like superfamily BMD_1387 546b1186e2ba55af2fb2da097b5546a0 116 SUPERFAMILY SSF140415 2 115 2.75E-28 T 13-10-2018 IPR023351 YppE-like superfamily BMD_1387 546b1186e2ba55af2fb2da097b5546a0 116 Pfam PF08807 Bacterial domain of unknown function (DUF1798) 9 115 1.2E-34 T 13-10-2018 IPR014913 Protein of unknown function DUF1798 BMD_2638 5f6d978c986c0d255a4d63591cd6768d 108 SMART SM00914 57 99 1.2E-4 T 13-10-2018 IPR014957 IDEAL domain BMD_2638 5f6d978c986c0d255a4d63591cd6768d 108 Pfam PF08858 IDEAL domain 71 99 7.1E-8 T 13-10-2018 IPR014957 IDEAL domain BMD_2638 5f6d978c986c0d255a4d63591cd6768d 108 Gene3D G3DSA:4.10.810.10 67 107 3.2E-6 T 13-10-2018 IPR027393 Virus scaffolding protein, C-terminal GO:0005515 BMD_4768 8b21d474863014ccf1439feb4e60dae1 312 SUPERFAMILY SSF64182 13 305 2.22E-71 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily BMD_4768 8b21d474863014ccf1439feb4e60dae1 312 Pfam PF01368 DHH family 15 153 1.0E-13 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BMD_4768 8b21d474863014ccf1439feb4e60dae1 312 Gene3D G3DSA:3.90.1640.10 1 197 2.9E-60 T 13-10-2018 BMD_4768 8b21d474863014ccf1439feb4e60dae1 312 Gene3D G3DSA:3.10.310.30 199 312 2.6E-36 T 13-10-2018 BMD_4768 8b21d474863014ccf1439feb4e60dae1 312 Pfam PF02272 DHHA1 domain 177 308 2.0E-14 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BMD_4262 fbd6cc48f68ff69b2ce54c5ad61f98aa 252 Pfam PF03799 Cell division protein FtsQ 122 238 2.6E-7 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB BMD_4262 fbd6cc48f68ff69b2ce54c5ad61f98aa 252 Hamap MF_00912 Cell division protein DivIB [divIB]. 9 252 29.187 T 13-10-2018 IPR026580 Cell division protein DivIB BMD_4262 fbd6cc48f68ff69b2ce54c5ad61f98aa 252 Gene3D G3DSA:3.40.50.10960 117 233 1.7E-38 T 13-10-2018 BMD_4262 fbd6cc48f68ff69b2ce54c5ad61f98aa 252 Gene3D G3DSA:3.10.20.310 50 116 8.6E-10 T 13-10-2018 BMD_4262 fbd6cc48f68ff69b2ce54c5ad61f98aa 252 Pfam PF08478 POTRA domain, FtsQ-type 50 118 2.3E-22 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type BMD_3082 a2dda2bf4b1a34ae5106faeaacd709e5 274 Gene3D G3DSA:3.30.750.24 135 272 1.4E-12 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3082 a2dda2bf4b1a34ae5106faeaacd709e5 274 SUPERFAMILY SSF52091 166 255 1.43E-9 T 13-10-2018 IPR036513 STAS domain superfamily BMD_4618 40dcbf9c2527d4000d31411965e5cb2d 170 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 3 170 38.205 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 BMD_4618 40dcbf9c2527d4000d31411965e5cb2d 170 SUPERFAMILY SSF53271 2 164 6.67E-50 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like BMD_4618 40dcbf9c2527d4000d31411965e5cb2d 170 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 4 170 9.8E-70 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 BMD_4618 40dcbf9c2527d4000d31411965e5cb2d 170 Pfam PF00156 Phosphoribosyl transferase domain 28 151 1.3E-15 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BMD_4618 40dcbf9c2527d4000d31411965e5cb2d 170 Gene3D G3DSA:3.40.50.2020 1 170 1.6E-60 T 13-10-2018 BMD_2903 381f7ab4f6c4f6583e953eadc96ff93f 109 Pfam PF17280 Family of unknown function (DUF5345) 16 92 1.3E-23 T 13-10-2018 IPR035238 Protein of unknown function DUF5345 BMD_2699 1aba7351d2f28894a14c0628ebbfbfd1 45 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 19 40 4.5E-9 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_3797 39ea06bf719a758a8e253ad48658b0c4 214 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 13 207 2.1E-35 T 13-10-2018 IPR006214 Bax inhibitor 1-related BMD_0746 37dc9f3eb22044f0808bef3c29e40956 144 Pfam PF13673 Acetyltransferase (GNAT) domain 21 140 5.5E-24 T 13-10-2018 IPR000182 GNAT domain BMD_0746 37dc9f3eb22044f0808bef3c29e40956 144 SUPERFAMILY SSF55729 6 141 7.43E-36 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0746 37dc9f3eb22044f0808bef3c29e40956 144 Gene3D G3DSA:3.40.630.30 1 139 7.5E-44 T 13-10-2018 BMD_1724 83cd8c4961ff0c02225fd46b226c83ae 174 SUPERFAMILY SSF55729 3 162 5.83E-40 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1724 83cd8c4961ff0c02225fd46b226c83ae 174 Gene3D G3DSA:3.40.630.30 4 172 4.2E-50 T 13-10-2018 BMD_1724 83cd8c4961ff0c02225fd46b226c83ae 174 Pfam PF13302 Acetyltransferase (GNAT) domain 5 138 3.8E-21 T 13-10-2018 IPR000182 GNAT domain BMD_2678 8402f4f8d87c303975d1a49477da5d5f 253 Gene3D G3DSA:3.60.10.10 1 249 3.1E-92 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BMD_2678 8402f4f8d87c303975d1a49477da5d5f 253 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 248 1.9E-95 T 13-10-2018 BMD_2678 8402f4f8d87c303975d1a49477da5d5f 253 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 13-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 BMD_2678 8402f4f8d87c303975d1a49477da5d5f 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 241 4.6E-23 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BMD_2678 8402f4f8d87c303975d1a49477da5d5f 253 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 249 2.2E-96 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BMD_2678 8402f4f8d87c303975d1a49477da5d5f 253 SUPERFAMILY SSF56219 1 249 7.2E-75 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BMD_2390 aa56373471992c14e71ac2fbaa2fa6aa 81 Pfam PF14470 Bacterial PH domain 3 74 5.6E-7 T 13-10-2018 IPR039519 YokE-like, PH domain BMD_4012 2079f38d7f3a978713b26fe89aa450f1 107 ProDom PD030115 YODL GK1575 1 107 2.0E-25 T 13-10-2018 BMD_2175 e670e4d2dcc93dd33330851e73e31744 375 Pfam PF03845 Spore germination protein 16 338 4.8E-107 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_2175 e670e4d2dcc93dd33330851e73e31744 375 Gene3D G3DSA:1.20.1740.10 12 375 2.7E-20 T 13-10-2018 BMD_2175 e670e4d2dcc93dd33330851e73e31744 375 PIRSF PIRSF006060 5 365 1.3E-12 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2175 e670e4d2dcc93dd33330851e73e31744 375 TIGRFAM TIGR00912 2A0309: spore germination protein (amino acid permease) 16 370 5.0E-86 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_4308 66f3ddb51b9aa310802cdeea97db13e2 255 Pfam PF00218 Indole-3-glycerol phosphate synthase 7 247 1.8E-87 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 BMD_4308 66f3ddb51b9aa310802cdeea97db13e2 255 SUPERFAMILY SSF51366 16 249 8.36E-78 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BMD_4308 66f3ddb51b9aa310802cdeea97db13e2 255 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 1 249 33.013 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 BMD_4308 66f3ddb51b9aa310802cdeea97db13e2 255 Gene3D G3DSA:3.20.20.70 1 253 6.2E-89 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_4308 66f3ddb51b9aa310802cdeea97db13e2 255 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 42 60 - T 13-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 BMD_1444 a6e3d3b296daf3c7933fcbf3e0547801 153 Pfam PF02681 Divergent PAP2 family 2 141 1.2E-42 T 13-10-2018 IPR003832 Protein of unknown function DUF212 BMD_1715 15794346818ebc11ad5f94ad1f871220 319 SUPERFAMILY SSF51569 4 250 6.04E-43 T 13-10-2018 BMD_1715 15794346818ebc11ad5f94ad1f871220 319 Gene3D G3DSA:3.20.20.70 4 302 1.3E-79 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_1715 15794346818ebc11ad5f94ad1f871220 319 Pfam PF00682 HMGL-like 121 241 1.1E-23 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BMD_3483 5b95f330284f90f79902d94092b2a08d 163 Pfam PF10901 Protein of unknown function (DUF2690) 31 141 4.2E-14 T 13-10-2018 IPR021224 Protein of unknown function DUF2690 BMD_4850 5eb7eb340dc32447e844f9a45a3f4bb4 260 Gene3D G3DSA:3.40.50.1820 23 260 1.1E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4850 5eb7eb340dc32447e844f9a45a3f4bb4 260 Pfam PF00326 Prolyl oligopeptidase family 69 258 1.3E-22 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BMD_4850 5eb7eb340dc32447e844f9a45a3f4bb4 260 SUPERFAMILY SSF53474 19 258 3.52E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold BMD_4850 5eb7eb340dc32447e844f9a45a3f4bb4 260 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 101 131 - T 13-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 BMD_3675 76d885e006bf30b3ba898b37b567d72d 121 Pfam PF09862 Protein of unknown function (DUF2089) 9 119 9.1E-44 T 13-10-2018 IPR018658 Protein of unknown function DUF2089 BMD_4701 ad0797e72caeb6cced6e2aac4953abad 284 SUPERFAMILY SSF161098 81 261 1.44E-33 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4701 ad0797e72caeb6cced6e2aac4953abad 284 Gene3D G3DSA:1.10.3720.10 74 273 1.8E-25 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4701 ad0797e72caeb6cced6e2aac4953abad 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 274 4.0E-33 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1393 a5c52305fb081bdf2d9a4414c518ae0d 361 Pfam PF08757 CotH kinase protein 48 354 3.7E-81 T 13-10-2018 IPR014867 Spore coat protein CotH BMD_2538 352645ef0601d6c67a99ed0034ab2358 96 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 88 4.5E-8 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BMD_2538 352645ef0601d6c67a99ed0034ab2358 96 PIRSF PIRSF034852 1 96 4.9E-40 T 13-10-2018 IPR008326 Uncharacterised conserved protein UCP034852 BMD_2538 352645ef0601d6c67a99ed0034ab2358 96 Gene3D G3DSA:2.60.300.12 1 96 8.7E-7 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_2538 352645ef0601d6c67a99ed0034ab2358 96 SUPERFAMILY SSF89360 1 93 1.7E-14 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BMD_3401 23b104e79ffea986bddad995ec70d590 291 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 20 222 5.5E-48 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3401 23b104e79ffea986bddad995ec70d590 291 Gene3D G3DSA:3.30.70.120 200 274 6.3E-16 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_3401 23b104e79ffea986bddad995ec70d590 291 PIRSF PIRSF006483 1 290 8.2E-78 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3401 23b104e79ffea986bddad995ec70d590 291 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 228 282 4.0E-20 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_3154 28fa8be5007691dc2b9b29fb5e6f84a6 202 Gene3D G3DSA:1.20.120.80 15 201 4.4E-48 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3154 28fa8be5007691dc2b9b29fb5e6f84a6 202 TIGRFAM TIGR02897 QoxC: cytochrome aa3 quinol oxidase, subunit III 12 201 3.7E-82 T 13-10-2018 IPR014246 Quinol oxidase subunit III GO:0015002|GO:0016021|GO:0042773 BMD_3154 28fa8be5007691dc2b9b29fb5e6f84a6 202 SUPERFAMILY SSF81452 18 199 2.35E-49 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_3154 28fa8be5007691dc2b9b29fb5e6f84a6 202 Pfam PF00510 Cytochrome c oxidase subunit III 23 198 1.5E-8 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_4512 d722b0a60321dc2878f505e37fe71d76 110 ProDom PD067165 YQFZ MEMBRANE WALL BH1402 TRANSMEMBRANE OB1935 CELL 1 109 4.0E-14 T 13-10-2018 IPR020506 Uncharacterised protein family YqfZ BMD_5201 ef54aa6ded199601b40a38742b5de381 274 Pfam PF08543 Phosphomethylpyrimidine kinase 13 261 9.4E-90 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 BMD_5201 ef54aa6ded199601b40a38742b5de381 274 SUPERFAMILY SSF53613 3 267 4.05E-73 T 13-10-2018 IPR029056 Ribokinase-like BMD_5201 ef54aa6ded199601b40a38742b5de381 274 Gene3D G3DSA:3.40.1190.20 1 271 1.1E-88 T 13-10-2018 IPR029056 Ribokinase-like BMD_5201 ef54aa6ded199601b40a38742b5de381 274 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 1.7E-85 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BMD_0566 495bd1caebfe2a243211585298ba232c 386 Pfam PF14398 YheC/D like ATP-grasp 151 369 3.8E-44 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D BMD_0566 495bd1caebfe2a243211585298ba232c 386 SUPERFAMILY SSF56059 176 358 1.94E-10 T 13-10-2018 BMD_1820 ad151fa681628621d6f981bbd89bc254 194 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 14 190 2.2E-40 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3055 a71b981fc32d9e82a757dae48bf4655c 111 Pfam PF05495 CHY zinc finger 19 93 2.1E-11 T 13-10-2018 IPR008913 Zinc finger, CHY-type GO:0008270 Reactome: R-HSA-110320|Reactome: R-HSA-983168 BMD_3055 a71b981fc32d9e82a757dae48bf4655c 111 PIRSF PIRSF017292 3 110 9.1E-42 T 13-10-2018 IPR016694 Protein of unknown function UCP017292, zinc finger, CHY-type BMD_3055 a71b981fc32d9e82a757dae48bf4655c 111 SUPERFAMILY SSF161219 10 95 3.92E-17 T 13-10-2018 IPR037274 Zinc finger, CHY-type superfamily GO:0008270 Reactome: R-HSA-110320|Reactome: R-HSA-983168 BMD_2296 c742f66251b3ee9dbc39a6163237d166 426 Pfam PF02447 GntP family permease 5 417 6.8E-10 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_2969 d7ec0a029fbb4eccc2f40041d3257afc 323 Gene3D G3DSA:3.10.310.30 252 312 2.3E-7 T 13-10-2018 BMD_2969 d7ec0a029fbb4eccc2f40041d3257afc 323 Pfam PF02272 DHHA1 domain 204 310 2.0E-6 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BMD_2969 d7ec0a029fbb4eccc2f40041d3257afc 323 SUPERFAMILY SSF64182 3 311 1.09E-26 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily BMD_1211 eb98dc7e536135b11226d12003930dcb 170 TIGRFAM TIGR02131 phaP_Bmeg: polyhydroxyalkanoic acid inclusion protein PhaP 1 165 1.1E-86 T 13-10-2018 IPR011728 Polyhydroxyalkanoic acid inclusion protein PhaP BMD_1211 eb98dc7e536135b11226d12003930dcb 170 Pfam PF09602 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) 1 165 1.7E-68 T 13-10-2018 IPR011728 Polyhydroxyalkanoic acid inclusion protein PhaP BMD_2577 38aa845737c953c395e017eeea100b95 44 Pfam PF10031 Small integral membrane protein (DUF2273) 1 28 6.8E-8 T 13-10-2018 IPR018730 Protein of unknown function DUF2273 BMD_5112 50be1efe69bbefc35f5df8b3fa40e4f1 350 ProSitePatterns PS01348 MraY family signature 2. 145 156 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_5112 50be1efe69bbefc35f5df8b3fa40e4f1 350 Pfam PF00953 Glycosyl transferase family 4 72 225 3.8E-40 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 BMD_5153 82c17609319090bb7212bbff203dbdb4 297 TIGRFAM TIGR02837 spore_II_R: stage II sporulation protein R 5 167 2.6E-61 T 13-10-2018 IPR014202 Sporulation stage II, protein R BMD_5153 82c17609319090bb7212bbff203dbdb4 297 Pfam PF09551 Stage II sporulation protein R (spore_II_R) 37 162 8.1E-47 T 13-10-2018 IPR014202 Sporulation stage II, protein R BMD_4335 e774574327ad25f7cdaf2de194eb3dad 449 Pfam PF03413 Peptidase propeptide and YPEB domain 376 431 1.2E-4 T 13-10-2018 IPR025711 PepSY domain BMD_4335 e774574327ad25f7cdaf2de194eb3dad 449 Pfam PF14620 YpeB sporulation 14 373 4.0E-126 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 BMD_4335 e774574327ad25f7cdaf2de194eb3dad 449 TIGRFAM TIGR02889 spore_YpeB: germination protein YpeB 3 439 9.5E-149 T 13-10-2018 IPR014239 Spore germination YpeB GO:0009847 BMD_3356 f1aafb7921fcb836cbbc713f839b2fc5 163 SUPERFAMILY SSF55729 20 159 5.49E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3356 f1aafb7921fcb836cbbc713f839b2fc5 163 Gene3D G3DSA:3.40.630.30 4 163 1.9E-44 T 13-10-2018 BMD_3356 f1aafb7921fcb836cbbc713f839b2fc5 163 Pfam PF00583 Acetyltransferase (GNAT) family 24 137 5.2E-14 T 13-10-2018 IPR000182 GNAT domain BMD_0205 be1f9b3c471c5632cbeabcc67c5cded9 266 Gene3D G3DSA:1.10.3720.10 6 264 2.8E-44 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0205 be1f9b3c471c5632cbeabcc67c5cded9 266 SUPERFAMILY SSF161098 3 258 7.48E-47 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4174 37eb5d977b128b66318cf3bf2b468654 626 Pfam PF02120 Flagellar hook-length control protein FliK 505 574 9.2E-11 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal BMD_4174 37eb5d977b128b66318cf3bf2b468654 626 Pfam PF02120 Flagellar hook-length control protein FliK 323 390 2.5E-13 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal BMD_4174 37eb5d977b128b66318cf3bf2b468654 626 Gene3D G3DSA:3.30.750.140 294 405 1.6E-11 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily BMD_4174 37eb5d977b128b66318cf3bf2b468654 626 Gene3D G3DSA:3.30.750.140 477 595 7.7E-10 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily BMD_1025 cbd5b0f3317779e6961e1680559b76e5 91 Gene3D G3DSA:3.40.50.10490 1 81 7.3E-24 T 13-10-2018 BMD_1025 cbd5b0f3317779e6961e1680559b76e5 91 SUPERFAMILY SSF53697 5 78 4.23E-17 T 13-10-2018 BMD_0546 f6a80a4a2def3eea10a94808eedbd2f5 237 Gene3D G3DSA:1.10.3720.10 24 234 1.6E-53 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0546 f6a80a4a2def3eea10a94808eedbd2f5 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 50 231 2.8E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0546 f6a80a4a2def3eea10a94808eedbd2f5 237 SUPERFAMILY SSF161098 31 217 1.96E-46 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0546 f6a80a4a2def3eea10a94808eedbd2f5 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 29 126 6.2E-29 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BMD_4488 c3539f66ff2e256d6311229036026b2a 68 Gene3D G3DSA:1.10.287.760 1 68 2.3E-30 T 13-10-2018 IPR023164 YqgQ-like superfamily BMD_4488 c3539f66ff2e256d6311229036026b2a 68 Pfam PF06014 Bacterial protein of unknown function (DUF910) 1 60 6.4E-30 T 13-10-2018 IPR009256 Protein of unknown function DUF910 BMD_4488 c3539f66ff2e256d6311229036026b2a 68 SUPERFAMILY SSF158379 1 61 1.57E-24 T 13-10-2018 IPR023164 YqgQ-like superfamily BMD_1758 cc27a9b3ea4990f5e3961d15e776c393 609 Gene3D G3DSA:1.20.1740.10 41 465 7.3E-24 T 13-10-2018 BMD_1758 cc27a9b3ea4990f5e3961d15e776c393 609 Pfam PF13520 Amino acid permease 28 446 3.3E-33 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1077 7caff2d718af260f077c58253e39f336 468 Gene3D G3DSA:1.20.1730.10 21 467 5.4E-86 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily BMD_1077 7caff2d718af260f077c58253e39f336 468 Pfam PF00474 Sodium:solute symporter family 33 407 1.9E-42 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BMD_2663 1476ca46d4d7903c221779f4d39c6827 132 SUPERFAMILY SSF48403 2 120 2.18E-24 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BMD_2663 1476ca46d4d7903c221779f4d39c6827 132 Gene3D G3DSA:1.25.40.20 1 129 2.6E-25 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BMD_2663 1476ca46d4d7903c221779f4d39c6827 132 Pfam PF12796 Ankyrin repeats (3 copies) 2 89 9.7E-16 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain BMD_2663 1476ca46d4d7903c221779f4d39c6827 132 SMART SM00248 28 57 0.02 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 BMD_2663 1476ca46d4d7903c221779f4d39c6827 132 SMART SM00248 60 89 0.0084 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 BMD_2663 1476ca46d4d7903c221779f4d39c6827 132 SMART SM00248 1 23 650.0 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 BMD_5073 a1dd609de79f52add9b53a31f6c225fd 396 SUPERFAMILY SSF50156 304 388 8.02E-15 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 BMD_5073 a1dd609de79f52add9b53a31f6c225fd 396 SMART SM00228 280 362 2.6E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 BMD_5073 a1dd609de79f52add9b53a31f6c225fd 396 Gene3D G3DSA:2.30.42.10 278 370 3.0E-12 T 13-10-2018 BMD_0189 75019c5871d03ab3ce22fbcafe8a1557 273 PIRSF PIRSF004793 5 269 1.7E-97 T 13-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 BMD_0189 75019c5871d03ab3ce22fbcafe8a1557 273 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 118 235 5.2E-43 T 13-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal BMD_0189 75019c5871d03ab3ce22fbcafe8a1557 273 Hamap MF_01499 Diadenylate cyclase [dacA]. 8 254 34.514 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 BMD_0189 75019c5871d03ab3ce22fbcafe8a1557 273 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 4 255 8.4E-102 T 13-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 BMD_0189 75019c5871d03ab3ce22fbcafe8a1557 273 SUPERFAMILY SSF143597 40 240 4.32E-71 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily BMD_0189 75019c5871d03ab3ce22fbcafe8a1557 273 Gene3D G3DSA:3.40.1700.10 102 255 1.3E-61 T 13-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily BMD_3001 756b61f1cd66cdb4e44eae65d170709b 443 Pfam PF01943 Polysaccharide biosynthesis protein 4 296 1.7E-25 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BMD_3001 756b61f1cd66cdb4e44eae65d170709b 443 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 348 435 2.1E-8 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain BMD_3001 756b61f1cd66cdb4e44eae65d170709b 443 PIRSF PIRSF038958 1 442 5.1E-74 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type BMD_4026 071939eed5906b78c5d1257b94e30fb9 282 TIGRFAM TIGR03827 GNAT_ablB: putative beta-lysine N-acetyltransferase 17 277 4.3E-87 T 13-10-2018 IPR022525 Beta-lysine N-acetyltransferase GO:0016407 BMD_4026 071939eed5906b78c5d1257b94e30fb9 282 Gene3D G3DSA:3.40.630.30 122 281 1.1E-15 T 13-10-2018 BMD_4026 071939eed5906b78c5d1257b94e30fb9 282 Pfam PF00583 Acetyltransferase (GNAT) family 140 230 1.0E-6 T 13-10-2018 IPR000182 GNAT domain BMD_4026 071939eed5906b78c5d1257b94e30fb9 282 SUPERFAMILY SSF55729 127 278 7.5E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2595 80196bdaaa3a4d214792f542c25e3e61 189 Pfam PF00881 Nitroreductase family 7 165 1.7E-24 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_2595 80196bdaaa3a4d214792f542c25e3e61 189 Gene3D G3DSA:3.40.109.10 1 182 4.4E-40 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_2595 80196bdaaa3a4d214792f542c25e3e61 189 SUPERFAMILY SSF55469 1 189 8.25E-36 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_1447 4d9e97bf3daadf3aeb3135db139fd134 187 Pfam PF13456 Reverse transcriptase-like 48 175 5.5E-12 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 BMD_1447 4d9e97bf3daadf3aeb3135db139fd134 187 Gene3D G3DSA:3.30.420.10 43 182 2.3E-26 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_1447 4d9e97bf3daadf3aeb3135db139fd134 187 SUPERFAMILY SSF53098 43 179 2.15E-18 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_2823 e709cfb5a143f1a2216d359cb81c5a89 195 SMART SM01207 11 186 1.4E-75 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_2823 e709cfb5a143f1a2216d359cb81c5a89 195 Pfam PF02660 Glycerol-3-phosphate acyltransferase 12 185 1.3E-50 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_2823 e709cfb5a143f1a2216d359cb81c5a89 195 Pfam PF07214 Protein of unknown function (DUF1418) 125 191 1.9E-4 T 13-10-2018 IPR010815 Protein of unknown function DUF1418 BMD_2823 e709cfb5a143f1a2216d359cb81c5a89 195 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 8 194 19.848 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_2823 e709cfb5a143f1a2216d359cb81c5a89 195 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 6 194 1.2E-55 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BMD_4579 ef89919c8956a894ffc32210a3536aa5 76 ProDom PD057834 YRHC TRANSMEMBRANE MEMBRANE 1 59 1.0E-4 T 13-10-2018 IPR025418 YrhC-like protein BMD_4579 ef89919c8956a894ffc32210a3536aa5 76 Pfam PF14143 YrhC-like protein 4 73 9.2E-19 T 13-10-2018 IPR025418 YrhC-like protein BMD_2868 856c963a7fde98e0cd4f4b1ed1ae4dac 507 Gene3D G3DSA:3.10.105.10 257 464 2.9E-126 T 13-10-2018 BMD_2868 856c963a7fde98e0cd4f4b1ed1ae4dac 507 PIRSF PIRSF002741 1 507 8.2E-86 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BMD_2868 856c963a7fde98e0cd4f4b1ed1ae4dac 507 SUPERFAMILY SSF53850 33 500 5.97E-101 T 13-10-2018 BMD_2868 856c963a7fde98e0cd4f4b1ed1ae4dac 507 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 424 1.1E-71 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain BMD_2868 856c963a7fde98e0cd4f4b1ed1ae4dac 507 Gene3D G3DSA:3.40.190.10 53 256 2.9E-126 T 13-10-2018 BMD_0597 aaf7ad68a8969084048a27ce2a658083 221 SUPERFAMILY SSF48317 13 204 6.02E-28 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BMD_0597 aaf7ad68a8969084048a27ce2a658083 221 Gene3D G3DSA:1.20.144.10 121 219 1.9E-21 T 13-10-2018 BMD_0597 aaf7ad68a8969084048a27ce2a658083 221 Gene3D G3DSA:1.20.144.10 11 120 6.6E-6 T 13-10-2018 BMD_0597 aaf7ad68a8969084048a27ce2a658083 221 SMART SM00014 90 199 6.6E-16 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_0597 aaf7ad68a8969084048a27ce2a658083 221 Pfam PF01569 PAP2 superfamily 70 198 2.1E-13 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BMD_4233 32832a35980a9626475727a810c123f4 291 Pfam PF03755 YicC-like family, N-terminal region 2 155 4.3E-46 T 13-10-2018 IPR013527 YicC-like, N-terminal BMD_4233 32832a35980a9626475727a810c123f4 291 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 291 1.9E-87 T 13-10-2018 IPR005229 Conserved hypothetical protein CHP00255 BMD_4233 32832a35980a9626475727a810c123f4 291 Pfam PF08340 Domain of unknown function (DUF1732) 207 291 6.6E-35 T 13-10-2018 IPR013551 Domain of unknown function DUF1732 BMD_0757 9afeaba0c358a5a73c825b9fd0e2f223 203 PIRSF PIRSF022704 12 203 6.3E-62 T 13-10-2018 IPR015987 Uncharacterised conserved protein UCP022704 BMD_0757 9afeaba0c358a5a73c825b9fd0e2f223 203 Gene3D G3DSA:2.60.120.200 17 203 5.5E-60 T 13-10-2018 BMD_0757 9afeaba0c358a5a73c825b9fd0e2f223 203 SUPERFAMILY SSF49899 7 202 1.23E-35 T 13-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BMD_0757 9afeaba0c358a5a73c825b9fd0e2f223 203 Pfam PF07081 Protein of unknown function (DUF1349) 22 202 2.7E-63 T 13-10-2018 IPR009784 Protein of unknown function DUF1349 BMD_2272 933179d68a5fdc9795c04f3977b9d0d9 497 Pfam PF00474 Sodium:solute symporter family 35 428 7.5E-19 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BMD_2272 933179d68a5fdc9795c04f3977b9d0d9 497 Gene3D G3DSA:1.20.1730.10 4 493 1.1E-26 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily BMD_4178 fc1069f767ca4151f1ece797006b8ceb 268 TIGRFAM TIGR03825 FliH_bacil: flagellar assembly protein FliH 7 258 2.0E-57 T 13-10-2018 IPR022524 Flagellar assembly FliH, Bacilli BMD_4178 fc1069f767ca4151f1ece797006b8ceb 268 Pfam PF02108 Flagellar assembly protein FliH 121 246 1.8E-8 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BMD_1712 b70a83e554e1719b90cd3ef6f04ead1b 441 Gene3D G3DSA:1.20.1250.20 27 425 3.3E-34 T 13-10-2018 BMD_1712 b70a83e554e1719b90cd3ef6f04ead1b 441 SUPERFAMILY SSF103473 27 430 2.62E-43 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1712 b70a83e554e1719b90cd3ef6f04ead1b 441 Pfam PF07690 Major Facilitator Superfamily 54 354 6.9E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_0523 43ca4ef454da11f9f89cde11c8a1bd7a 524 Pfam PF02652 L-lactate permease 15 519 1.0E-175 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 BMD_0523 43ca4ef454da11f9f89cde11c8a1bd7a 524 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 5 521 1.7E-183 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 BMD_3004 941e30a41ca27b83ee2a3115f8e90c5c 132 Pfam PF13115 YtkA-like 31 115 3.0E-13 T 13-10-2018 IPR032693 YtkA-like domain BMD_5067 7de76985afa7a00e313975002070468f 103 ProDom PD070949 MEMBRANE PROTEIN YVLA SPANNING SIMILAR SE2241 LMO0604 LMO2177 LIN2280 INTEGRAL 1 46 2.0E-12 T 13-10-2018 BMD_4102 e758d0ac5bd73ed7a0d6d65211e2fea3 305 Gene3D G3DSA:3.20.20.140 1 303 7.6E-101 T 13-10-2018 BMD_4102 e758d0ac5bd73ed7a0d6d65211e2fea3 305 SUPERFAMILY SSF51556 2 300 1.05E-71 T 13-10-2018 IPR032466 Metal-dependent hydrolase BMD_4102 e758d0ac5bd73ed7a0d6d65211e2fea3 305 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 2 300 1.5E-91 T 13-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 BMD_0164 2c51690f96d19c95dc021c90941e32c8 265 Pfam PF02361 Cobalt transport protein 14 237 5.5E-56 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component BMD_0164 2c51690f96d19c95dc021c90941e32c8 265 Hamap MF_01461 Energy-coupling factor transporter transmembrane protein EcfT [ecfT]. 2 265 37.716 T 13-10-2018 IPR024919 ECF transporter transmembrane protein EcfT GO:0016021|GO:0022857|GO:0055085 BMD_2996 f7a812585a413b7e3a5ab30a005c7425 377 Pfam PF00534 Glycosyl transferases group 1 220 345 1.7E-7 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 BMD_2996 f7a812585a413b7e3a5ab30a005c7425 377 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 16 185 1.1E-28 T 13-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 BMD_2996 f7a812585a413b7e3a5ab30a005c7425 377 SUPERFAMILY SSF53756 56 353 1.26E-29 T 13-10-2018 BMD_2996 f7a812585a413b7e3a5ab30a005c7425 377 Gene3D G3DSA:3.40.50.2000 188 350 7.0E-20 T 13-10-2018 BMD_5150 06e5c0894f2eb623df0d340408a1c7b7 186 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 8 186 21.697 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP BMD_5150 06e5c0894f2eb623df0d340408a1c7b7 186 Pfam PF02659 Putative manganese efflux pump 36 183 4.9E-40 T 13-10-2018 IPR003810 Putative manganese efflux pump BMD_3174 e3a00f5b130874504dc0d6895265229b 377 TIGRFAM TIGR04383 acidic_w_LPXTA: processed acidic surface protein 1 376 2.9E-80 T 13-10-2018 IPR030832 Processed acidic surface protein BMD_3174 e3a00f5b130874504dc0d6895265229b 377 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 345 376 2.1E-4 T 13-10-2018 BMD_4673 42500bfb04ab7cb3456297d53f50103e 161 ProDom PD104119 YSXD OB2071 ORFY 1 146 3.0E-13 T 13-10-2018 BMD_2295 7491cf1057ca8ef88e94f2580a8a6d36 199 Pfam PF09335 SNARE associated Golgi protein 30 151 2.3E-12 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_3469 8f57a4e0ef9d8e70009c5b7069267c46 285 SUPERFAMILY SSF51658 6 275 1.05E-64 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_3469 8f57a4e0ef9d8e70009c5b7069267c46 285 Pfam PF01261 Xylose isomerase-like TIM barrel 21 220 1.5E-28 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_3469 8f57a4e0ef9d8e70009c5b7069267c46 285 Gene3D G3DSA:3.20.20.150 1 278 1.5E-76 T 13-10-2018 BMD_3985 a47b32af26f72d35065b8e71ed1c88ee 375 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 205 370 1.1E-28 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_3985 a47b32af26f72d35065b8e71ed1c88ee 375 Gene3D G3DSA:3.30.300.210 220 374 7.7E-38 T 13-10-2018 IPR038501 Spore germination GerAC superfamily BMD_3985 a47b32af26f72d35065b8e71ed1c88ee 375 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 2 371 3.6E-86 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1863 4f83f6f60c126274d5563b903f9ded66 199 Pfam PF00510 Cytochrome c oxidase subunit III 7 197 3.7E-18 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1863 4f83f6f60c126274d5563b903f9ded66 199 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 20 199 4.7E-68 T 13-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 BMD_1863 4f83f6f60c126274d5563b903f9ded66 199 Gene3D G3DSA:1.20.120.80 14 199 1.2E-54 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1863 4f83f6f60c126274d5563b903f9ded66 199 SUPERFAMILY SSF81452 7 197 2.09E-54 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_4653 2f28ed03e105d37b4d9fdc3e44a2f009 172 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 7 158 4.5E-32 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BMD_4653 2f28ed03e105d37b4d9fdc3e44a2f009 172 Pfam PF04093 rod shape-determining protein MreD 2 163 7.0E-28 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BMD_1266 75b3022929da868e308a83617232ca26 119 PIRSF PIRSF034303 1 119 3.0E-32 T 13-10-2018 IPR012543 Protein of unknown function DUF1694 BMD_1266 75b3022929da868e308a83617232ca26 119 SUPERFAMILY SSF160515 3 109 1.22E-28 T 13-10-2018 BMD_1266 75b3022929da868e308a83617232ca26 119 Gene3D G3DSA:3.30.1330.30 1 119 1.7E-34 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like BMD_1266 75b3022929da868e308a83617232ca26 119 Pfam PF07997 Protein of unknown function (DUF1694) 3 108 7.5E-30 T 13-10-2018 IPR012543 Protein of unknown function DUF1694 BMD_3816 34cb2f9ca8af32f82d3645eddc2a58de 175 Pfam PF14317 YcxB-like protein 105 167 1.5E-11 T 13-10-2018 IPR025588 YcxB-like protein BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 SUPERFAMILY SSF46894 130 230 1.57E-32 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 SMART SM00448 3 113 5.7E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 Pfam PF00072 Response regulator receiver domain 5 114 2.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 Gene3D G3DSA:3.40.50.2300 1 130 7.7E-40 T 13-10-2018 BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 SMART SM00862 153 229 2.6E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 229 1.4E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 Gene3D G3DSA:1.10.10.10 131 235 6.7E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5245 df23b50e59fdae9f7f16496fc4371ff6 235 SUPERFAMILY SSF52172 2 124 5.98E-44 T 13-10-2018 IPR011006 CheY-like superfamily BMD_3424 330261542822099bb47f1be5817cca23 432 Pfam PF09861 Domain of unknown function (DUF2088) 21 189 3.1E-12 T 13-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 BMD_3424 330261542822099bb47f1be5817cca23 432 Gene3D G3DSA:3.40.50.11440 24 235 5.4E-10 T 13-10-2018 BMD_4322 9d8a94006f79d4aebcadece7b7d15c6e 240 ProDom PD119161 YPHF BH1644 PROTEINS PRECURSOR ORF1 RBL05088 SIGNAL SIMILAR 14 237 1.0E-83 T 13-10-2018 BMD_1295 a4d9c5994463e07fae70147d7cefe7e2 199 SUPERFAMILY SSF46689 3 75 2.29E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1295 a4d9c5994463e07fae70147d7cefe7e2 199 SUPERFAMILY SSF48498 99 196 1.19E-9 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BMD_1295 a4d9c5994463e07fae70147d7cefe7e2 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 1.1E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1295 a4d9c5994463e07fae70147d7cefe7e2 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_1295 a4d9c5994463e07fae70147d7cefe7e2 199 Gene3D G3DSA:1.10.357.10 3 199 7.6E-44 T 13-10-2018 BMD_1295 a4d9c5994463e07fae70147d7cefe7e2 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_1295 a4d9c5994463e07fae70147d7cefe7e2 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3987 64e52f5d42998b70b23a6c578a04abe8 200 Pfam PF13021 Domain of unknown function (DUF3885) 159 192 4.4E-12 T 13-10-2018 IPR024976 Domain of unknown function DUF3885 BMD_2783 1e043070f5b926123638387da18562e9 448 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 421 8.4E-152 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BMD_2783 1e043070f5b926123638387da18562e9 448 Pfam PF05525 Branched-chain amino acid transport protein 10 433 5.1E-158 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BMD_2687 2f9122616616de861a380ab75dd87b8b 198 Pfam PF02342 TerD domain 2 196 6.9E-73 T 13-10-2018 IPR003325 TerD domain BMD_2687 2f9122616616de861a380ab75dd87b8b 198 Gene3D G3DSA:2.60.60.30 19 195 2.9E-61 T 13-10-2018 BMD_2043 1c9602c2edb0a2dcc7de2881878d88d0 205 Gene3D G3DSA:3.40.630.100 1 204 9.4E-71 T 13-10-2018 IPR038128 Poly-gamma-glutamate hydrolase superfamily BMD_2043 1c9602c2edb0a2dcc7de2881878d88d0 205 Pfam PF05908 Poly-gamma-glutamate hydrolase 6 197 3.6E-66 T 13-10-2018 IPR008585 Poly-gamma-glutamate hydrolase BMD_5101 2cecda42f7bd3c6e79b61960ec2da1d3 84 SUPERFAMILY SSF101498 1 82 2.22E-16 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily BMD_5101 2cecda42f7bd3c6e79b61960ec2da1d3 84 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 83 2.9E-13 T 13-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 BMD_5101 2cecda42f7bd3c6e79b61960ec2da1d3 84 Pfam PF04316 Anti-sigma-28 factor, FlgM 31 80 7.0E-13 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal BMD_4402 70c4c5b42c9260a13fe94a51283b5aa7 309 Pfam PF00753 Metallo-beta-lactamase superfamily 25 89 8.7E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_4402 70c4c5b42c9260a13fe94a51283b5aa7 309 Hamap MF_01818 Ribonuclease BN [rbn]. 1 308 41.009 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 BMD_4402 70c4c5b42c9260a13fe94a51283b5aa7 309 SUPERFAMILY SSF56281 1 308 1.07E-79 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4402 70c4c5b42c9260a13fe94a51283b5aa7 309 Gene3D G3DSA:3.60.15.10 1 308 4.0E-100 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_4402 70c4c5b42c9260a13fe94a51283b5aa7 309 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 2 307 5.4E-114 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 BMD_3021 9569438fa4f01ff8c09f9930cdaefd9f 317 Pfam PF07070 SpoOM protein 2 196 3.7E-48 T 13-10-2018 IPR009776 Sporulation stage 0, protein M BMD_0970 d3c12df9b6c29b404785506bb91810c2 344 Pfam PF01594 AI-2E family transporter 16 327 1.6E-44 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like BMD_4853 07e08de1fdf9e77a575d6849fb1e2e60 237 Gene3D G3DSA:1.10.3720.10 38 235 6.2E-23 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4853 07e08de1fdf9e77a575d6849fb1e2e60 237 SUPERFAMILY SSF161098 40 221 1.57E-29 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4853 07e08de1fdf9e77a575d6849fb1e2e60 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 60 233 1.4E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_4925 b02542a5b45c73631ca84a2963c20572 140 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 7 131 1.5E-33 T 13-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein BMD_1666 f3a3f9ac42bbceef0b3e3a3dc95f0c4f 257 Pfam PF03741 Integral membrane protein TerC family 15 207 4.4E-49 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BMD_1666 f3a3f9ac42bbceef0b3e3a3dc95f0c4f 257 SUPERFAMILY SSF103473 9 247 4.45E-5 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1666 f3a3f9ac42bbceef0b3e3a3dc95f0c4f 257 TIGRFAM TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family 12 246 6.3E-81 T 13-10-2018 IPR022493 Integral membrane YkoY BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 SMART SM00347 36 136 1.2E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 Pfam PF01047 MarR family 43 101 4.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 60 76 1.6E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 126 146 1.6E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 96 112 1.6E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 PRINTS PR00598 Bacterial regulatory protein MarR family signature 77 92 1.6E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 SUPERFAMILY SSF46785 38 151 1.6E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2435 246ce1ee1e37302f36ccb2e4b8166b47 152 Gene3D G3DSA:1.10.10.10 17 152 2.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3623 5993d32d476bf06612464beb77edcceb 273 Pfam PF01261 Xylose isomerase-like TIM barrel 38 224 4.0E-30 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_3623 5993d32d476bf06612464beb77edcceb 273 Gene3D G3DSA:3.20.20.150 1 266 7.8E-54 T 13-10-2018 BMD_3623 5993d32d476bf06612464beb77edcceb 273 SUPERFAMILY SSF51658 31 259 2.07E-49 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 SUPERFAMILY SSF52317 477 710 5.04E-15 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 Gene3D G3DSA:3.40.50.880 459 753 3.9E-67 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 Gene3D G3DSA:3.40.50.880 32 333 5.7E-68 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 Pfam PF03575 Peptidase family S51 465 701 3.3E-7 T 13-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 Pfam PF03575 Peptidase family S51 37 282 3.9E-8 T 13-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 SUPERFAMILY SSF52317 48 288 5.49E-13 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 TIGRFAM TIGR02069 cyanophycinase: cyanophycinase 37 308 1.3E-47 T 13-10-2018 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 BMD_1604 fb25e495e2b5d710320052c2463c9c8e 850 TIGRFAM TIGR02069 cyanophycinase: cyanophycinase 464 722 7.6E-50 T 13-10-2018 IPR011811 Peptidase S51, cyanophycinase GO:0016787|GO:0044260 MetaCyc: PWY-7052 BMD_1812 f6007241a99c0984228541d3afb17f40 321 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 29 306 3.8E-64 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 BMD_1812 f6007241a99c0984228541d3afb17f40 321 Pfam PF09323 Domain of unknown function (DUF1980) 11 218 2.1E-45 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 BMD_0721 5376dc796818efe5ce3c4de3db491ba8 393 Pfam PF06054 Competence protein CoiA-like family 17 247 1.1E-54 T 13-10-2018 IPR010330 Competence-induced protein CoiA-like BMD_0721 5376dc796818efe5ce3c4de3db491ba8 393 PIRSF PIRSF007487 1 384 1.2E-74 T 13-10-2018 IPR021176 Competence-induced protein CoiA BMD_3192 751a656ff87f9f0f4164c923e19683a2 137 Pfam PF03965 Penicillinase repressor 18 130 7.1E-24 T 13-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 BMD_3192 751a656ff87f9f0f4164c923e19683a2 137 Gene3D G3DSA:1.10.10.10 17 92 3.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3192 751a656ff87f9f0f4164c923e19683a2 137 PIRSF PIRSF019455 14 137 3.5E-22 T 13-10-2018 IPR005650 BlaI transcriptional regulatory family GO:0003677|GO:0045892 BMD_3192 751a656ff87f9f0f4164c923e19683a2 137 SUPERFAMILY SSF46785 18 134 1.9E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2187 2b7bee1963703eaaf755a4a85baf1238 353 Pfam PF10101 Predicted membrane protein (DUF2339) 75 350 5.5E-26 T 13-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane BMD_4315 dd6573aa3f887ea19fb0dfee363c7e8f 321 Gene3D G3DSA:1.10.600.10 7 321 1.2E-101 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_4315 dd6573aa3f887ea19fb0dfee363c7e8f 321 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site BMD_4315 dd6573aa3f887ea19fb0dfee363c7e8f 321 Pfam PF00348 Polyprenyl synthetase 31 270 1.6E-69 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 BMD_4315 dd6573aa3f887ea19fb0dfee363c7e8f 321 SUPERFAMILY SSF48576 7 320 7.74E-89 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_4315 dd6573aa3f887ea19fb0dfee363c7e8f 321 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site BMD_4315 dd6573aa3f887ea19fb0dfee363c7e8f 321 TIGRFAM TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II 2 321 1.7E-163 T 13-10-2018 IPR014119 Heptaprenyl diphosphate synthase component II KEGG: 00900+2.5.1.30|MetaCyc: PWY-5807 BMD_1785 5a911e850f61664b5a166af53de7dcd5 62 Gene3D G3DSA:3.90.1680.10 1 62 1.9E-10 T 13-10-2018 IPR036590 SOS response associated peptidase-like BMD_1785 5a911e850f61664b5a166af53de7dcd5 62 SUPERFAMILY SSF143081 1 59 8.11E-13 T 13-10-2018 IPR036590 SOS response associated peptidase-like BMD_1785 5a911e850f61664b5a166af53de7dcd5 62 Pfam PF02586 SOS response associated peptidase (SRAP) 1 47 5.7E-8 T 13-10-2018 IPR003738 SOS response associated peptidase (SRAP) BMD_1130 98e5be2d31b34f9f604cff085ab1dbc2 255 PIRSF PIRSF016557 1 254 8.6E-59 T 13-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 BMD_1130 98e5be2d31b34f9f604cff085ab1dbc2 255 Gene3D G3DSA:3.20.20.140 1 255 1.1E-61 T 13-10-2018 BMD_0704 ec02801c2ac1580ad408d14859082967 249 Hamap MF_01860 UPF0736 protein . 1 249 50.258 T 13-10-2018 IPR020909 UPF0736 BMD_0704 ec02801c2ac1580ad408d14859082967 249 Pfam PF12227 Protein of unknown function (DUF3603) 35 249 1.8E-111 T 13-10-2018 IPR020909 UPF0736 BMD_2918 89a3199df12669eeb186b2260ea60d39 122 Pfam PF07676 WD40-like Beta Propeller Repeat 46 60 0.0071 T 13-10-2018 IPR011659 WD40-like Beta Propeller BMD_2918 89a3199df12669eeb186b2260ea60d39 122 SUPERFAMILY SSF82171 2 118 3.92E-13 T 13-10-2018 BMD_2918 89a3199df12669eeb186b2260ea60d39 122 Gene3D G3DSA:2.120.10.30 1 122 1.5E-15 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BMD_3629 a4d7bb59367919d7b84df48f79b54bf1 122 Pfam PF07875 Coat F domain 19 80 1.3E-16 T 13-10-2018 IPR012851 Spore coat protein CotF-like BMD_3928 c25e50bc13cd0d8c1aed1cbac8b09e21 193 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 5 185 1.1E-36 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3764 572808ce9bbe57816163fc8503f775e1 99 Pfam PF11181 Heat induced stress protein YflT 6 83 4.2E-8 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_2006 db03044a01ff2de9d0200e091e5b37bd 470 PIRSF PIRSF006060 1 468 4.9E-84 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2006 db03044a01ff2de9d0200e091e5b37bd 470 ProSitePatterns PS00218 Amino acid permeases signature. 44 75 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_2006 db03044a01ff2de9d0200e091e5b37bd 470 Pfam PF00324 Amino acid permease 19 462 5.4E-126 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_2006 db03044a01ff2de9d0200e091e5b37bd 470 Gene3D G3DSA:1.20.1740.10 8 469 2.1E-67 T 13-10-2018 BMD_0091 ca0871c7ad5c59b946c2c8fbdf05d807 292 PIRSF PIRSF005261 1 291 4.3E-81 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BMD_0091 ca0871c7ad5c59b946c2c8fbdf05d807 292 SUPERFAMILY SSF118352 231 289 1.31E-21 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BMD_0091 ca0871c7ad5c59b946c2c8fbdf05d807 292 Gene3D G3DSA:3.55.30.10 2 233 8.1E-94 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BMD_0091 ca0871c7ad5c59b946c2c8fbdf05d807 292 Hamap MF_00117 33 kDa chaperonin [hslO]. 2 291 41.633 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BMD_0091 ca0871c7ad5c59b946c2c8fbdf05d807 292 Pfam PF01430 Hsp33 protein 3 280 4.4E-93 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BMD_0091 ca0871c7ad5c59b946c2c8fbdf05d807 292 SUPERFAMILY SSF64397 3 241 1.28E-77 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BMD_0091 ca0871c7ad5c59b946c2c8fbdf05d807 292 Gene3D G3DSA:3.90.1280.10 234 292 4.2E-24 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BMD_2589 8ef38c0f881e810c30361ba3a46aa754 165 SUPERFAMILY SSF55729 1 140 3.49E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2589 8ef38c0f881e810c30361ba3a46aa754 165 Gene3D G3DSA:3.40.630.30 2 162 5.9E-33 T 13-10-2018 BMD_2589 8ef38c0f881e810c30361ba3a46aa754 165 Pfam PF00583 Acetyltransferase (GNAT) family 38 136 4.3E-12 T 13-10-2018 IPR000182 GNAT domain BMD_3784 67090d8e8e59c7ccff004d8d736b2b9b 220 Pfam PF00174 Oxidoreductase molybdopterin binding domain 39 185 9.4E-40 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 BMD_3784 67090d8e8e59c7ccff004d8d736b2b9b 220 SUPERFAMILY SSF56524 22 204 5.76E-61 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 BMD_3784 67090d8e8e59c7ccff004d8d736b2b9b 220 Gene3D G3DSA:3.90.420.10 29 209 1.7E-45 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 BMD_3006 5ae6389d49e708d99c6af2f298b0dbcd 221 SUPERFAMILY SSF52317 2 219 6.11E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_3006 5ae6389d49e708d99c6af2f298b0dbcd 221 Gene3D G3DSA:3.40.50.880 1 221 1.6E-54 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_3006 5ae6389d49e708d99c6af2f298b0dbcd 221 Pfam PF01965 DJ-1/PfpI family 25 217 5.3E-13 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BMD_4869 e8c237224b459fdf90f8a8f9f9fd8c46 52 Pfam PF07561 Domain of Unknown Function (DUF1540) 5 47 8.3E-16 T 13-10-2018 IPR011437 Domain of unknown function DUF1540 BMD_0980 7d6f1aed96b8dd21a4f2ed1faba4caa1 287 SUPERFAMILY SSF51658 1 269 2.49E-48 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_0980 7d6f1aed96b8dd21a4f2ed1faba4caa1 287 Pfam PF01261 Xylose isomerase-like TIM barrel 24 196 2.8E-8 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_0980 7d6f1aed96b8dd21a4f2ed1faba4caa1 287 Gene3D G3DSA:3.20.20.150 1 272 8.4E-41 T 13-10-2018 BMD_0270 7a1639b398235ce576eedd6516724a3f 66 Pfam PF14044 NETI protein 10 64 6.3E-30 T 13-10-2018 IPR025930 NETI protein BMD_1889 dbd09ede8bb0a8a39128c23e355405e3 498 SUPERFAMILY SSF89796 24 225 2.35E-16 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily BMD_1889 dbd09ede8bb0a8a39128c23e355405e3 498 Pfam PF02515 CoA-transferase family III 239 460 3.9E-40 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 BMD_1889 dbd09ede8bb0a8a39128c23e355405e3 498 SUPERFAMILY SSF89796 236 439 1.22E-47 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily BMD_1889 dbd09ede8bb0a8a39128c23e355405e3 498 Gene3D G3DSA:3.40.50.10540 234 492 1.2E-47 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily BMD_0591 106345ffd78e90089b27bde4831723c4 631 Pfam PF01757 Acyltransferase family 12 343 5.4E-19 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BMD_0591 106345ffd78e90089b27bde4831723c4 631 Gene3D G3DSA:3.40.50.1110 438 620 3.6E-10 T 13-10-2018 IPR036514 SGNH hydrolase superfamily BMD_0591 106345ffd78e90089b27bde4831723c4 631 SUPERFAMILY SSF52266 461 619 8.79E-16 T 13-10-2018 BMD_4142 b1c7cacba146eff70248eb385143530f 156 SUPERFAMILY SSF74942 85 156 1.7E-22 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily BMD_4142 b1c7cacba146eff70248eb385143530f 156 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 7 156 25.016 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 BMD_4142 b1c7cacba146eff70248eb385143530f 156 Pfam PF02576 RimP N-terminal domain 12 84 7.4E-30 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal BMD_4142 b1c7cacba146eff70248eb385143530f 156 SUPERFAMILY SSF75420 3 84 6.28E-27 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily BMD_4142 b1c7cacba146eff70248eb385143530f 156 Gene3D G3DSA:3.30.300.70 1 81 3.6E-30 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily BMD_4142 b1c7cacba146eff70248eb385143530f 156 Pfam PF17384 RimP C-terminal SH3 domain 87 156 5.0E-21 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal BMD_4142 b1c7cacba146eff70248eb385143530f 156 Gene3D G3DSA:2.30.30.180 88 154 5.1E-26 T 13-10-2018 BMD_1030 65330130f20ca0236b1f083a8b86acc4 252 Gene3D G3DSA:3.60.110.10 1 248 8.2E-35 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_1030 65330130f20ca0236b1f083a8b86acc4 252 Pfam PF00795 Carbon-nitrogen hydrolase 6 237 2.0E-19 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BMD_1030 65330130f20ca0236b1f083a8b86acc4 252 SUPERFAMILY SSF56317 1 240 1.57E-34 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_2860 53e3fc5290068019839c5042a07a1a09 148 Pfam PF14328 Domain of unknown function (DUF4385) 4 145 1.7E-68 T 13-10-2018 IPR025494 Protein of unknown function DUF4385 BMD_3660 d395fac3d835ba6560d3abe18e61b066 217 Pfam PF06130 Phosphate propanoyltransferase 28 106 1.4E-28 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BMD_3660 d395fac3d835ba6560d3abe18e61b066 217 Pfam PF06130 Phosphate propanoyltransferase 136 199 9.9E-17 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BMD_3660 d395fac3d835ba6560d3abe18e61b066 217 SUPERFAMILY SSF50692 139 168 2.71E-5 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BMD_3660 d395fac3d835ba6560d3abe18e61b066 217 PIRSF PIRSF010130 1 212 2.5E-85 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BMD_3969 0e9b9101f78e1dc9404027503e2f4aca 321 Gene3D G3DSA:1.20.1530.20 6 316 8.7E-59 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily BMD_3969 0e9b9101f78e1dc9404027503e2f4aca 321 Pfam PF01758 Sodium Bile acid symporter family 42 210 1.5E-15 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 BMD_2222 5c7521f731c9af83469351d7cd234063 125 Gene3D G3DSA:2.30.29.50 1 125 2.4E-52 T 13-10-2018 IPR037063 Bacterial Pleckstrin homology domain superfamily BMD_2222 5c7521f731c9af83469351d7cd234063 125 Pfam PF08000 Bacterial PH domain 3 123 3.7E-49 T 13-10-2018 IPR012544 Bacterial Pleckstrin homology domain BMD_2222 5c7521f731c9af83469351d7cd234063 125 SUPERFAMILY SSF50729 6 124 2.34E-45 T 13-10-2018 BMD_3709 2a601b641d199fa5de41f4089d47798b 146 Gene3D G3DSA:1.10.10.2520 8 96 6.4E-11 T 13-10-2018 BMD_3709 2a601b641d199fa5de41f4089d47798b 146 Pfam PF07486 Cell Wall Hydrolase 24 133 9.9E-16 T 13-10-2018 IPR011105 Cell wall hydrolase, SleB GO:0016787 BMD_1606 d9e9afd750c79ac096a4772d41f56bdb 422 Pfam PF07690 Major Facilitator Superfamily 27 368 2.3E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1606 d9e9afd750c79ac096a4772d41f56bdb 422 Gene3D G3DSA:1.20.1250.20 213 421 5.1E-27 T 13-10-2018 BMD_1606 d9e9afd750c79ac096a4772d41f56bdb 422 Gene3D G3DSA:1.20.1250.20 1 198 7.1E-34 T 13-10-2018 BMD_1606 d9e9afd750c79ac096a4772d41f56bdb 422 SUPERFAMILY SSF103473 4 414 1.31E-66 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_4868 a7de003ead7568bdc8cda48964ffb169 93 PIRSF PIRSF020408 2 93 2.5E-32 T 13-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 BMD_4868 a7de003ead7568bdc8cda48964ffb169 93 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 3 91 3.2E-19 T 13-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 BMD_2351 4bf0890219f097f8ae0508ff8e5ec8c3 312 Pfam PF00892 EamA-like transporter family 156 289 5.7E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2351 4bf0890219f097f8ae0508ff8e5ec8c3 312 Pfam PF00892 EamA-like transporter family 12 141 1.2E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2351 4bf0890219f097f8ae0508ff8e5ec8c3 312 SUPERFAMILY SSF103481 192 293 2.35E-14 T 13-10-2018 BMD_2351 4bf0890219f097f8ae0508ff8e5ec8c3 312 SUPERFAMILY SSF103481 44 142 2.75E-9 T 13-10-2018 BMD_1797 ee20d89f35ba7c9f1c11a4ff4c402f57 562 SMART SM00642 13 421 1.9E-162 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_1797 ee20d89f35ba7c9f1c11a4ff4c402f57 562 SUPERFAMILY SSF51011 482 559 8.4E-17 T 13-10-2018 BMD_1797 ee20d89f35ba7c9f1c11a4ff4c402f57 562 Gene3D G3DSA:2.60.40.1180 483 560 2.7E-21 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta BMD_1797 ee20d89f35ba7c9f1c11a4ff4c402f57 562 Gene3D G3DSA:3.20.20.80 4 474 7.9E-204 T 13-10-2018 BMD_1797 ee20d89f35ba7c9f1c11a4ff4c402f57 562 Gene3D G3DSA:3.90.400.10 105 174 7.9E-204 T 13-10-2018 BMD_1797 ee20d89f35ba7c9f1c11a4ff4c402f57 562 SUPERFAMILY SSF51445 3 479 3.88E-159 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily BMD_1797 ee20d89f35ba7c9f1c11a4ff4c402f57 562 Pfam PF00128 Alpha amylase, catalytic domain 28 379 4.2E-123 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BMD_2769 9bc4b7e1466ba0f0fa66104203df5453 156 Pfam PF12867 DinB superfamily 16 142 3.5E-12 T 13-10-2018 IPR024775 DinB-like domain BMD_2769 9bc4b7e1466ba0f0fa66104203df5453 156 SUPERFAMILY SSF109854 4 148 1.03E-16 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2769 9bc4b7e1466ba0f0fa66104203df5453 156 Gene3D G3DSA:1.20.120.450 2 149 3.1E-8 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2142 1b8da2a61357cc36044ea17edb70bd36 208 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 208 27.541 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 BMD_2142 1b8da2a61357cc36044ea17edb70bd36 208 SUPERFAMILY SSF52218 3 207 1.36E-51 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2142 1b8da2a61357cc36044ea17edb70bd36 208 Gene3D G3DSA:3.40.50.360 1 208 6.8E-62 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_2142 1b8da2a61357cc36044ea17edb70bd36 208 Pfam PF02525 Flavodoxin-like fold 3 203 7.7E-46 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_5148 4c11c2f349feb74edef9598120f72f8e 153 Gene3D G3DSA:3.40.1400.10 1 148 9.3E-62 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BMD_5148 4c11c2f349feb74edef9598120f72f8e 153 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 142 4.6E-53 T 13-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 BMD_5148 4c11c2f349feb74edef9598120f72f8e 153 SUPERFAMILY SSF89623 1 144 4.97E-59 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BMD_5148 4c11c2f349feb74edef9598120f72f8e 153 PIRSF PIRSF005384 1 147 3.5E-60 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BMD_5148 4c11c2f349feb74edef9598120f72f8e 153 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 145 3.4E-63 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BMD_5148 4c11c2f349feb74edef9598120f72f8e 153 Pfam PF02502 Ribose/Galactose Isomerase 3 140 1.4E-57 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BMD_0538 9e120fda4d3fca99758490df9d76eef8 83 Pfam PF14148 YhdB-like protein 1 70 7.0E-40 T 13-10-2018 IPR025431 YhdB-like protein BMD_3297 0132dfaac9b6385a6a467a9210695017 95 Pfam PF00741 Gas vesicle protein 13 51 1.8E-13 T 13-10-2018 IPR000638 Gas vesicle protein GvpA GO:0005198|GO:0012506 BMD_3297 0132dfaac9b6385a6a467a9210695017 95 ProSitePatterns PS00234 Gas vesicles protein GVPa signature 1. 14 28 - T 13-10-2018 IPR018493 Gas vesicle protein GvpA, conserved site GO:0005198|GO:0012506 BMD_0938 73900fed28289ebb3b15d9d37d7af843 542 Gene3D G3DSA:3.20.20.80 396 520 5.9E-6 T 13-10-2018 BMD_3545 d2eaa8e8c1e38c8955ff41c216c56a2d 383 Pfam PF13786 Domain of unknown function (DUF4179) 43 128 3.3E-12 T 13-10-2018 IPR025436 Domain of unknown function DUF4179 BMD_3480 b23fb6d4f7ab2276e19e3001cabffd22 385 Gene3D G3DSA:3.30.420.40 203 350 6.3E-8 T 13-10-2018 BMD_4121 e0cb3e35b8a070c7650d2ef636fc04d8 69 Pfam PF14035 YlzJ-like protein 3 68 6.9E-26 T 13-10-2018 IPR025619 YlzJ-like protein BMD_3301 962f3b6d3f80b6a51c0d9f28fc70e7e7 308 SUPERFAMILY SSF52540 15 290 2.35E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3301 962f3b6d3f80b6a51c0d9f28fc70e7e7 308 Pfam PF07728 AAA domain (dynein-related subfamily) 40 191 3.1E-15 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 BMD_3301 962f3b6d3f80b6a51c0d9f28fc70e7e7 308 Gene3D G3DSA:3.40.50.300 20 209 1.7E-28 T 13-10-2018 BMD_3301 962f3b6d3f80b6a51c0d9f28fc70e7e7 308 SMART SM00382 34 202 7.0E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain BMD_3301 962f3b6d3f80b6a51c0d9f28fc70e7e7 308 TIGRFAM TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN 15 278 8.6E-132 T 13-10-2018 IPR013462 Gas vesicle protein GvpN GO:0000166|GO:0005524|GO:0031411|GO:0031412 BMD_2510 f8e2d8c20e42ded44ac8dd6e16a5a105 309 Pfam PF12705 PD-(D/E)XK nuclease superfamily 196 307 4.9E-9 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type BMD_3042 768c4edd75428aab458fb4c8af53cebc 445 Pfam PF00209 Sodium:neurotransmitter symporter family 147 441 6.7E-36 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_3042 768c4edd75428aab458fb4c8af53cebc 445 Pfam PF00209 Sodium:neurotransmitter symporter family 5 122 1.5E-26 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_3042 768c4edd75428aab458fb4c8af53cebc 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 12 33 5.6E-13 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_3042 768c4edd75428aab458fb4c8af53cebc 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 41 60 5.6E-13 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_3042 768c4edd75428aab458fb4c8af53cebc 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 87 113 5.6E-13 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 BMD_3042 768c4edd75428aab458fb4c8af53cebc 445 SUPERFAMILY SSF161070 5 442 3.27E-136 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 BMD_3817 1c8403b9d53b6910dee4664e16a7dfa6 128 SUPERFAMILY SSF54593 5 122 8.53E-19 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3817 1c8403b9d53b6910dee4664e16a7dfa6 128 Gene3D G3DSA:3.10.180.10 9 122 9.8E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3924 db5e53958ba87e2a3c1af7e9879ac58f 323 Gene3D G3DSA:3.20.20.70 1 320 2.3E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BMD_3924 db5e53958ba87e2a3c1af7e9879ac58f 323 Pfam PF03060 Nitronate monooxygenase 3 308 1.4E-68 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 BMD_3924 db5e53958ba87e2a3c1af7e9879ac58f 323 SUPERFAMILY SSF51412 1 322 1.28E-68 T 13-10-2018 BMD_1269 30f7aa4df53f5d290b19e354ebcfe630 102 Gene3D G3DSA:1.20.210.10 2 99 2.2E-14 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1269 30f7aa4df53f5d290b19e354ebcfe630 102 SUPERFAMILY SSF81442 5 100 2.35E-12 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_1269 30f7aa4df53f5d290b19e354ebcfe630 102 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 3 66 2.2E-8 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BMD_4097 59c03c2de79803de5596c2b0a93cdb1f 181 Pfam PF10628 Outer spore coat protein E (CotE) 5 176 1.7E-74 T 13-10-2018 IPR018901 Spore coat protein CotE BMD_2800 3fe71b57d1edc83e9272a1766b32ec3b 423 SUPERFAMILY SSF103473 3 412 7.85E-66 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_2800 3fe71b57d1edc83e9272a1766b32ec3b 423 Pfam PF07690 Major Facilitator Superfamily 15 284 1.7E-33 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_2800 3fe71b57d1edc83e9272a1766b32ec3b 423 Gene3D G3DSA:1.20.1250.20 2 416 2.1E-56 T 13-10-2018 BMD_2800 3fe71b57d1edc83e9272a1766b32ec3b 423 PIRSF PIRSF002808 1 328 5.5E-25 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BMD_2800 3fe71b57d1edc83e9272a1766b32ec3b 423 PIRSF PIRSF002808 277 422 9.5E-9 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BMD_3599 de93af8673fef104916eb1661ab4c8bf 125 Pfam PF14112 Immunity protein 22 7 125 8.0E-31 T 13-10-2018 IPR025560 Immunity protein 22 BMD_2545 69e82e3dbf063d16793fee41aa768e27 199 ProSitePatterns PS00194 Thioredoxin family active site. 88 106 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BMD_2545 69e82e3dbf063d16793fee41aa768e27 199 Gene3D G3DSA:3.40.30.10 30 199 7.6E-50 T 13-10-2018 BMD_2545 69e82e3dbf063d16793fee41aa768e27 199 SUPERFAMILY SSF52833 57 195 7.73E-42 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_2545 69e82e3dbf063d16793fee41aa768e27 199 Pfam PF00578 AhpC/TSA family 61 179 2.1E-30 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_3746 26738fc7aa2c20d465c06bfa60022041 396 SUPERFAMILY SSF64182 5 297 1.44E-30 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily BMD_3746 26738fc7aa2c20d465c06bfa60022041 396 Gene3D G3DSA:3.10.310.30 247 300 2.9E-10 T 13-10-2018 BMD_0080 91b5e21267a772820b35ae7e18f2f2da 123 Pfam PF04977 Septum formation initiator 47 122 6.9E-18 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 PIRSF PIRSF005419 1 678 4.3E-258 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 Pfam PF00771 FHIPEP family 15 668 4.2E-273 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 126 149 - T 13-10-2018 IPR025505 FHIPEP conserved site BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 22 35 2.2E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 59 78 2.2E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 121 137 2.2E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 140 158 2.2E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 221 235 2.2E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 170 187 2.2E-55 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 Gene3D G3DSA:1.10.490.80 578 676 2.2E-28 T 13-10-2018 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 Gene3D G3DSA:3.40.30.60 343 486 2.3E-53 T 13-10-2018 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 Gene3D G3DSA:1.10.8.540 487 575 3.5E-30 T 13-10-2018 BMD_4161 d9fe0f1af196408a2d94a7f650f06bd5 678 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 4 676 1.8E-271 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 BMD_3086 8bd49767762e9323b407bf4bc1330a4b 277 SUPERFAMILY SSF52091 166 276 8.04E-15 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3086 8bd49767762e9323b407bf4bc1330a4b 277 Gene3D G3DSA:3.30.750.24 163 277 3.2E-32 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3086 8bd49767762e9323b407bf4bc1330a4b 277 Pfam PF01740 STAS domain 174 266 4.3E-10 T 13-10-2018 IPR002645 STAS domain BMD_2573 9a792d0545629f65b007d9fcf5790f1d 252 Pfam PF11495 Archaeal transcriptional regulator TrmB 102 222 9.6E-11 T 13-10-2018 IPR021586 Transcription regulator TrmB, C-terminal BMD_2573 9a792d0545629f65b007d9fcf5790f1d 252 Pfam PF01978 Sugar-specific transcriptional regulator TrmB 2 69 4.1E-19 T 13-10-2018 IPR002831 Transcription regulator TrmB, N-terminal BMD_2573 9a792d0545629f65b007d9fcf5790f1d 252 SUPERFAMILY SSF46785 1 75 1.89E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2573 9a792d0545629f65b007d9fcf5790f1d 252 Gene3D G3DSA:1.10.10.10 1 95 3.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3447 270071983efbb79e2ec37025ef21f70f 86 Pfam PF14150 YesK-like protein 13 81 1.3E-6 T 13-10-2018 IPR025434 YesK-like protein BMD_3912 9e0f8458ba75d2d5311a58216d4bf7a4 248 TIGRFAM TIGR02206 intg_mem_TP0381: conserved hypothetical integral membrane protein TIGR02206 13 230 5.4E-61 T 13-10-2018 IPR011737 Conserved hypothetical protein CHP02206, TP0381 BMD_3912 9e0f8458ba75d2d5311a58216d4bf7a4 248 Pfam PF09529 Integral membrane protein (intg_mem_TP0381) 16 226 2.2E-51 T 13-10-2018 IPR011737 Conserved hypothetical protein CHP02206, TP0381 BMD_1224 a3fca59ce28a5b6b51f0b1f8829be641 240 Hamap MF_02105 Lactate utilization protein A [lutA]. 2 239 62.949 T 13-10-2018 IPR022822 Lactate utilization protein A GO:0006089 BMD_1224 a3fca59ce28a5b6b51f0b1f8829be641 240 Pfam PF02754 Cysteine-rich domain 4 85 1.2E-16 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_1224 a3fca59ce28a5b6b51f0b1f8829be641 240 Pfam PF02754 Cysteine-rich domain 133 216 6.8E-14 T 13-10-2018 IPR004017 Cysteine-rich domain BMD_4959 3298cc65d000d1534af9bef9ca1b0512 76 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 12 63 3.0E-22 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BMD_4959 3298cc65d000d1534af9bef9ca1b0512 76 Gene3D G3DSA:3.30.300.130 1 76 3.2E-33 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BMD_4959 3298cc65d000d1534af9bef9ca1b0512 76 Pfam PF01106 NifU-like domain 8 73 4.6E-28 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BMD_4959 3298cc65d000d1534af9bef9ca1b0512 76 SUPERFAMILY SSF117916 2 75 5.56E-27 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BMD_4864 450b8dc0d2f843f5dfd3bd04883708a0 444 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 434 6.3E-123 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BMD_4864 450b8dc0d2f843f5dfd3bd04883708a0 444 PIRSF PIRSF006446 1 444 7.0E-111 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BMD_1781 f3b5bf26a52dfaf36482f1a3aa48ab71 69 Pfam PF00477 Small hydrophilic plant seed protein 13 67 5.5E-6 T 13-10-2018 IPR038956 Late embryogenesis abundant protein, LEA_5 subgroup BMD_1541 ddab104b2ad6ad4632e1c5ba0a629fbc 319 SUPERFAMILY SSF51735 1 308 1.45E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_1541 ddab104b2ad6ad4632e1c5ba0a629fbc 319 Gene3D G3DSA:3.40.50.720 1 311 2.0E-103 T 13-10-2018 BMD_1541 ddab104b2ad6ad4632e1c5ba0a629fbc 319 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 240 7.4E-25 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BMD_4425 93bbdfdae292ad9d1f90547235847d06 330 Gene3D G3DSA:3.40.50.970 2 330 1.5E-114 T 13-10-2018 BMD_4425 93bbdfdae292ad9d1f90547235847d06 330 SUPERFAMILY SSF52518 8 329 2.0E-99 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold BMD_4425 93bbdfdae292ad9d1f90547235847d06 330 Pfam PF00676 Dehydrogenase E1 component 20 320 3.0E-98 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 BMD_1390 ee99d9ae22a34e3e341a53890b144e43 137 Pfam PF14179 YppG-like protein 2 135 6.2E-34 T 13-10-2018 IPR025555 YppG-like protein BMD_1490 ef7390d1715b84cd6743d21adb22a6f4 326 SUPERFAMILY SSF53613 3 313 1.17E-57 T 13-10-2018 IPR029056 Ribokinase-like BMD_1490 ef7390d1715b84cd6743d21adb22a6f4 326 Gene3D G3DSA:3.40.1190.20 1 326 6.2E-95 T 13-10-2018 IPR029056 Ribokinase-like BMD_1490 ef7390d1715b84cd6743d21adb22a6f4 326 Pfam PF00294 pfkB family carbohydrate kinase 11 304 2.3E-30 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB BMD_1782 dda30b8dc6dcb26fdc25af429c021875 300 Pfam PF09557 Domain of unknown function (DUF2382) 174 283 8.5E-28 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_1782 dda30b8dc6dcb26fdc25af429c021875 300 TIGRFAM TIGR02271 TIGR02271: conserved domain 174 285 1.8E-31 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_1782 dda30b8dc6dcb26fdc25af429c021875 300 Pfam PF11181 Heat induced stress protein YflT 6 122 2.3E-14 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_0316 7fc48df17b74c22ccf46005097abcbef 425 Pfam PF04286 Protein of unknown function (DUF445) 50 423 3.3E-81 T 13-10-2018 IPR007383 Protein of unknown function DUF445 BMD_2395 85c0cd78bdf1b23ede144181a2559189 189 Pfam PF11385 Protein of unknown function (DUF3189) 3 150 5.9E-51 T 13-10-2018 IPR021525 Protein of unknown function DUF3189 BMD_3031 31d2f8d243abc2edafe27c88e14d77b0 152 Pfam PF00583 Acetyltransferase (GNAT) family 32 138 4.5E-12 T 13-10-2018 IPR000182 GNAT domain BMD_3031 31d2f8d243abc2edafe27c88e14d77b0 152 SUPERFAMILY SSF55729 2 147 8.92E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3031 31d2f8d243abc2edafe27c88e14d77b0 152 Gene3D G3DSA:3.40.630.30 2 152 3.1E-31 T 13-10-2018 BMD_4545 b5aa3620596bfaba55c937a8b3ef233d 147 Gene3D G3DSA:1.10.1510.10 1 90 2.6E-30 T 13-10-2018 BMD_4545 b5aa3620596bfaba55c937a8b3ef233d 147 Pfam PF09424 Yqey-like protein 5 146 6.6E-54 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 BMD_4545 b5aa3620596bfaba55c937a8b3ef233d 147 Gene3D G3DSA:1.10.10.410 91 147 3.6E-25 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal BMD_4545 b5aa3620596bfaba55c937a8b3ef233d 147 SUPERFAMILY SSF89095 1 146 6.8E-43 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 BMD_0984 f3ae7b1de92c1df6206cf0abf7ff7088 245 Pfam PF09347 Domain of unknown function (DUF1989) 8 179 7.3E-51 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 BMD_0984 f3ae7b1de92c1df6206cf0abf7ff7088 245 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 4 232 1.1E-90 T 13-10-2018 IPR017792 Urea carboxylase-associated protein 2 BMD_0717 9dc162cd0aec82cf2072632997e6aaa3 253 Pfam PF03818 Malonate/sodium symporter MadM subunit 4 61 6.8E-27 T 13-10-2018 IPR018402 Malonate/sodium symporter MadM subunit, N-terminal BMD_0717 9dc162cd0aec82cf2072632997e6aaa3 253 TIGRFAM TIGR00808 malonate_madM: malonate transporter, MadM subunit 1 252 3.5E-116 T 13-10-2018 IPR004691 Malonate/sodium symporter MadM subunit GO:0044668 BMD_4259 9a27f4eb511ef29bc2fd44d89e99ab52 307 PIRSF PIRSF018571 1 300 2.6E-90 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 BMD_4259 9a27f4eb511ef29bc2fd44d89e99ab52 307 Pfam PF03419 Sporulation factor SpoIIGA 3 297 3.9E-85 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 BMD_4259 9a27f4eb511ef29bc2fd44d89e99ab52 307 TIGRFAM TIGR02854 spore_II_GA: sigma-E processing peptidase SpoIIGA 3 298 8.4E-97 T 13-10-2018 IPR005081 Sigma-E processing peptidase SpoIIGA GO:0004190|GO:0006508|GO:0030436 BMD_3845 8997662cd841042b6ba0f72543f669a5 226 Pfam PF02517 CAAX protease self-immunity 129 217 9.6E-20 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BMD_1924 0cac8887a6f78bcab7af7786eb7c6642 226 Gene3D G3DSA:3.40.50.150 26 226 5.8E-55 T 13-10-2018 BMD_1924 0cac8887a6f78bcab7af7786eb7c6642 226 SUPERFAMILY SSF53335 9 199 2.57E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_1924 0cac8887a6f78bcab7af7786eb7c6642 226 Pfam PF08241 Methyltransferase domain 53 144 1.2E-21 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BMD_3033 db27708f2789d5f28e77ebd70405f3d0 194 Pfam PF02417 Chromate transporter 5 170 2.2E-35 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 BMD_4364 ed58f0163d14a6c6ad9914a63e57da70 39 TIGRFAM TIGR01732 tiny_TM_bacill: conserved hypothetical protein 13 35 1.2E-13 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_4364 ed58f0163d14a6c6ad9914a63e57da70 39 Pfam PF09680 Protein of unknown function (Tiny_TM_bacill) 14 36 8.1E-14 T 13-10-2018 IPR010070 Sporulation protein YjcZ-like BMD_0887 965cdfb8b6fcaed143d52cd07be30d59 247 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 239 1.9E-29 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0887 965cdfb8b6fcaed143d52cd07be30d59 247 SUPERFAMILY SSF161098 48 229 1.7E-32 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0887 965cdfb8b6fcaed143d52cd07be30d59 247 Gene3D G3DSA:1.10.3720.10 43 239 6.1E-26 T 13-10-2018 IPR035906 MetI-like superfamily BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 SMART SM00347 25 125 3.8E-26 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 Gene3D G3DSA:1.10.10.10 5 142 2.0E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 1.6E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 SUPERFAMILY SSF46785 13 138 8.98E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_5015 0f04f85ed0359b6d08fa8c6fdde0df90 145 Pfam PF01047 MarR family 33 89 6.1E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BMD_0932 4aacfcbf7d3e75ec4cf905d71dde3973 268 SUPERFAMILY SSF161098 2 268 1.03E-66 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0932 4aacfcbf7d3e75ec4cf905d71dde3973 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 262 4.3E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0932 4aacfcbf7d3e75ec4cf905d71dde3973 268 Gene3D G3DSA:1.10.3720.10 1 260 4.0E-59 T 13-10-2018 IPR035906 MetI-like superfamily BMD_3750 c4c6b25b4cbb8521048c8f5fef49c87f 247 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 202 3.0E-17 T 13-10-2018 BMD_3750 c4c6b25b4cbb8521048c8f5fef49c87f 247 Gene3D G3DSA:3.40.50.1000 5 211 3.3E-57 T 13-10-2018 IPR023214 HAD superfamily BMD_3750 c4c6b25b4cbb8521048c8f5fef49c87f 247 SUPERFAMILY SSF56784 2 239 4.69E-27 T 13-10-2018 IPR036412 HAD-like superfamily BMD_3750 c4c6b25b4cbb8521048c8f5fef49c87f 247 Gene3D G3DSA:1.10.150.240 18 104 3.3E-57 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BMD_3380 b76d862e751dab61da61adae3850dfaa 206 SUPERFAMILY SSF88713 4 197 2.97E-63 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BMD_3380 b76d862e751dab61da61adae3850dfaa 206 Pfam PF01522 Polysaccharide deacetylase 3 121 3.6E-37 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BMD_3380 b76d862e751dab61da61adae3850dfaa 206 Gene3D G3DSA:3.20.20.370 1 202 2.7E-71 T 13-10-2018 BMD_0758 a8dab0e533a75f6359a9b54edf125776 206 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 4 185 4.1E-36 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_1704 f8a178ca08d8fe7a28d898e252a0a989 277 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 8 52 2.2E-6 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BMD_1704 f8a178ca08d8fe7a28d898e252a0a989 277 TIGRFAM TIGR02790 nickel_nikC: nickel ABC transporter, permease subunit NikC 17 270 5.7E-117 T 13-10-2018 IPR014157 Nickel ABC transporter, permease subunit NikC GO:0015099|GO:0016021 BMD_1704 f8a178ca08d8fe7a28d898e252a0a989 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 270 3.2E-29 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1704 f8a178ca08d8fe7a28d898e252a0a989 277 Gene3D G3DSA:1.10.3720.10 66 271 1.2E-26 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1704 f8a178ca08d8fe7a28d898e252a0a989 277 SUPERFAMILY SSF161098 70 257 9.16E-29 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2124 b0b050d23f99037d40e9c8fd9e11ba8d 638 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 433 622 5.0E-7 T 13-10-2018 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 BMD_2124 b0b050d23f99037d40e9c8fd9e11ba8d 638 Gene3D G3DSA:3.40.50.410 438 635 8.3E-9 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BMD_2124 b0b050d23f99037d40e9c8fd9e11ba8d 638 SMART SM00327 443 627 6.7E-11 T 13-10-2018 IPR002035 von Willebrand factor, type A BMD_2124 b0b050d23f99037d40e9c8fd9e11ba8d 638 SUPERFAMILY SSF53300 447 632 2.23E-14 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BMD_1315 7170c64e2295c882d5c975145fbec279 148 Pfam PF00578 AhpC/TSA family 5 125 5.5E-13 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BMD_1315 7170c64e2295c882d5c975145fbec279 148 SUPERFAMILY SSF52833 2 141 9.19E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_1315 7170c64e2295c882d5c975145fbec279 148 Gene3D G3DSA:3.40.30.10 1 148 4.3E-40 T 13-10-2018 BMD_1949 461be091b61810d27810ea5398124ee1 319 Gene3D G3DSA:3.40.50.1980 186 315 1.6E-41 T 13-10-2018 BMD_1949 461be091b61810d27810ea5398124ee1 319 SUPERFAMILY SSF53807 41 314 3.06E-67 T 13-10-2018 BMD_1949 461be091b61810d27810ea5398124ee1 319 Gene3D G3DSA:3.40.50.1980 24 181 1.3E-38 T 13-10-2018 BMD_1949 461be091b61810d27810ea5398124ee1 319 Pfam PF01497 Periplasmic binding protein 65 286 7.9E-41 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain BMD_1250 01af749d70cc42d0cc5c440309ef6c33 460 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 8 457 3.0E-146 T 13-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 BMD_1250 01af749d70cc42d0cc5c440309ef6c33 460 Pfam PF03553 Na+/H+ antiporter family 157 451 2.6E-57 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 BMD_0266 e53a0fabb43b984f182709cdcd70bbac 441 PIRSF PIRSF005353 1 441 4.2E-174 T 13-10-2018 IPR026033 Purine permease PbuG-like BMD_0266 e53a0fabb43b984f182709cdcd70bbac 441 Pfam PF00860 Permease family 16 402 5.5E-45 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_0047 7ef6e92fed87acca8a397bece05c09ea 109 Gene3D G3DSA:3.30.70.120 1 103 2.9E-44 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BMD_0047 7ef6e92fed87acca8a397bece05c09ea 109 SUPERFAMILY SSF54913 1 107 3.5E-14 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BMD_0047 7ef6e92fed87acca8a397bece05c09ea 109 Pfam PF06153 Cyclic-di-AMP receptor 1 109 2.4E-52 T 13-10-2018 IPR010375 Cyclic-di-AMP receptor BMD_5075 95afec97bd00cb95b56cd272464863c0 402 Pfam PF01551 Peptidase family M23 293 395 1.1E-25 T 13-10-2018 IPR016047 Peptidase M23 BMD_5075 95afec97bd00cb95b56cd272464863c0 402 SUPERFAMILY SSF51261 196 400 5.75E-43 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_5075 95afec97bd00cb95b56cd272464863c0 402 Gene3D G3DSA:2.70.70.10 254 401 2.6E-38 T 13-10-2018 IPR011055 Duplicated hybrid motif BMD_5075 95afec97bd00cb95b56cd272464863c0 402 SUPERFAMILY SSF57997 36 128 8.5E-5 T 13-10-2018 BMD_5075 95afec97bd00cb95b56cd272464863c0 402 Gene3D G3DSA:1.20.5.340 15 130 2.0E-5 T 13-10-2018 BMD_3520 3aa86ae01c660acd280e3978a68c1706 211 Pfam PF01810 LysE type translocator 13 201 1.0E-29 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_3384 0d3148f578e3b7ab22b2942adc52c82b 211 Gene3D G3DSA:3.40.50.360 1 211 3.2E-57 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3384 0d3148f578e3b7ab22b2942adc52c82b 211 SUPERFAMILY SSF52218 1 211 2.42E-47 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3384 0d3148f578e3b7ab22b2942adc52c82b 211 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 211 26.889 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 BMD_3384 0d3148f578e3b7ab22b2942adc52c82b 211 Pfam PF02525 Flavodoxin-like fold 3 204 5.0E-42 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_5163 f4805d20991aa9322de184b314df9764 176 Pfam PF10740 Domain of unknown function (DUF2529) 1 172 5.2E-62 T 13-10-2018 IPR019676 Domain of unknown function (DUF2529) BMD_5163 f4805d20991aa9322de184b314df9764 176 Gene3D G3DSA:3.40.50.10490 1 176 3.3E-58 T 13-10-2018 BMD_5163 f4805d20991aa9322de184b314df9764 176 SUPERFAMILY SSF53697 3 139 8.34E-5 T 13-10-2018 BMD_1972 2c88b9325942aca35e6f286cfddc36a4 144 Pfam PF00011 Hsp20/alpha crystallin family 44 139 8.3E-15 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain BMD_1972 2c88b9325942aca35e6f286cfddc36a4 144 Gene3D G3DSA:2.60.40.790 9 140 5.9E-25 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_1972 2c88b9325942aca35e6f286cfddc36a4 144 SUPERFAMILY SSF49764 23 139 1.7E-24 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 SMART SM00226 2 149 3.0E-53 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 Gene3D G3DSA:3.40.50.2300 1 155 1.6E-61 T 13-10-2018 BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 147 4.4E-40 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 6.9E-14 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 123 138 6.9E-14 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 47 63 6.9E-14 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 6.9E-14 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 BMD_0372 c7cc8c106fd13e829b57602293d00d5f 157 SUPERFAMILY SSF52788 1 150 1.01E-48 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily BMD_1183 5b7fcdd68265d85971d89698b2b36a9b 168 Gene3D G3DSA:3.40.630.30 1 160 5.4E-24 T 13-10-2018 BMD_1183 5b7fcdd68265d85971d89698b2b36a9b 168 Pfam PF13673 Acetyltransferase (GNAT) domain 47 154 3.6E-10 T 13-10-2018 IPR000182 GNAT domain BMD_1183 5b7fcdd68265d85971d89698b2b36a9b 168 SUPERFAMILY SSF55729 2 147 6.52E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4317 0354b76efdb20813e41db8cf261e5160 264 Pfam PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 24 220 1.5E-51 T 13-10-2018 IPR009920 Heptaprenyl diphosphate synthase subunit 1 GO:0009234 KEGG: 00900+2.5.1.30|MetaCyc: PWY-5807 BMD_1118 c3b9e66f922cb43d7d9b644ec05602d4 303 Gene3D G3DSA:3.90.550.10 1 278 2.3E-55 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1118 c3b9e66f922cb43d7d9b644ec05602d4 303 SUPERFAMILY SSF53448 7 225 9.38E-51 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_1118 c3b9e66f922cb43d7d9b644ec05602d4 303 Pfam PF00535 Glycosyl transferase family 2 9 138 2.4E-31 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BMD_2425 6471fdedab0ed4266d26d1bf9c61a77f 157 SUPERFAMILY SSF109854 4 144 5.95E-21 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2425 6471fdedab0ed4266d26d1bf9c61a77f 157 Gene3D G3DSA:1.20.120.450 2 154 3.1E-14 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2425 6471fdedab0ed4266d26d1bf9c61a77f 157 Pfam PF12867 DinB superfamily 11 147 3.0E-17 T 13-10-2018 IPR024775 DinB-like domain BMD_2527 b7b8e979d87fca430428302290895f0b 163 SUPERFAMILY SSF55729 2 163 1.1E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2527 b7b8e979d87fca430428302290895f0b 163 Pfam PF13420 Acetyltransferase (GNAT) domain 3 156 3.3E-23 T 13-10-2018 BMD_2527 b7b8e979d87fca430428302290895f0b 163 Gene3D G3DSA:3.40.630.30 1 163 2.8E-50 T 13-10-2018 BMD_0719 924d46f2902f290d7d4d9d04c8010190 226 Hamap MF_01124 Adapter protein MecA [mecA]. 1 223 27.401 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA BMD_0719 924d46f2902f290d7d4d9d04c8010190 226 PIRSF PIRSF029008 1 225 2.5E-73 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA BMD_0719 924d46f2902f290d7d4d9d04c8010190 226 Gene3D G3DSA:3.30.70.1950 126 224 6.8E-28 T 13-10-2018 IPR038471 MecA, C-terminal domain superfamily BMD_0719 924d46f2902f290d7d4d9d04c8010190 226 Pfam PF05389 Negative regulator of genetic competence (MecA) 1 219 3.2E-48 T 13-10-2018 IPR008681 Negative regulator of genetic competence, MecA BMD_1203 02dad218460aac10d01d8127010ed34e 361 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 2 360 2.5E-77 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1203 02dad218460aac10d01d8127010ed34e 361 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 195 358 8.5E-25 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1203 02dad218460aac10d01d8127010ed34e 361 Gene3D G3DSA:3.30.300.210 211 361 3.3E-13 T 13-10-2018 IPR038501 Spore germination GerAC superfamily BMD_0983 1aaf51833a8a80a62106aa3b866b77ad 217 Pfam PF09347 Domain of unknown function (DUF1989) 20 184 1.5E-57 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 BMD_0983 1aaf51833a8a80a62106aa3b866b77ad 217 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 15 214 4.5E-93 T 13-10-2018 IPR017791 Urea carboxylase-associated protein 1 BMD_4457 4a2e834ba8e774716c6419e425fe2fa1 93 Pfam PF10942 Protein of unknown function (DUF2619) 19 87 8.0E-27 T 13-10-2018 IPR020390 Uncharacterised protein family YqhV BMD_4457 4a2e834ba8e774716c6419e425fe2fa1 93 ProDom PD064940 YQHV TRANSMEMBRANE MEMBRANE BH2798 12 76 4.0E-8 T 13-10-2018 IPR020390 Uncharacterised protein family YqhV BMD_0818 33d6b4695c648c0c960d8e0e1cd96614 228 Pfam PF04893 Yip1 domain 22 210 1.5E-22 T 13-10-2018 IPR006977 Yip1 domain GO:0016020 BMD_4021 ffc5d51db4a97a04c4eaca431c0fe28f 71 Gene3D G3DSA:1.10.150.260 1 71 3.0E-29 T 13-10-2018 IPR036806 YozE SAM-like superfamily BMD_4021 ffc5d51db4a97a04c4eaca431c0fe28f 71 PIRSF PIRSF037262 1 71 1.1E-31 T 13-10-2018 IPR010673 Protein of unknown function UPF0346 BMD_4021 ffc5d51db4a97a04c4eaca431c0fe28f 71 Pfam PF06855 YozE SAM-like fold 3 69 7.3E-29 T 13-10-2018 IPR023089 YozE SAM-like domain BMD_4021 ffc5d51db4a97a04c4eaca431c0fe28f 71 SUPERFAMILY SSF140652 1 70 1.19E-28 T 13-10-2018 IPR036806 YozE SAM-like superfamily BMD_4021 ffc5d51db4a97a04c4eaca431c0fe28f 71 Hamap MF_01538 UPF0346 protein . 1 70 21.743 T 13-10-2018 IPR010673 Protein of unknown function UPF0346 BMD_2992 4ea2b5d2fc2338bc56640e5d1268754e 361 SUPERFAMILY SSF52418 92 353 9.55E-45 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2992 4ea2b5d2fc2338bc56640e5d1268754e 361 SUPERFAMILY SSF47648 17 81 3.01E-15 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2992 4ea2b5d2fc2338bc56640e5d1268754e 361 Gene3D G3DSA:3.40.1030.10 95 359 3.6E-53 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2992 4ea2b5d2fc2338bc56640e5d1268754e 361 Pfam PF00591 Glycosyl transferase family, a/b domain 103 344 9.7E-26 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2992 4ea2b5d2fc2338bc56640e5d1268754e 361 Pfam PF02885 Glycosyl transferase family, helical bundle domain 16 79 3.6E-14 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 BMD_2992 4ea2b5d2fc2338bc56640e5d1268754e 361 Gene3D G3DSA:1.20.970.10 11 81 5.5E-23 T 13-10-2018 BMD_0640 e05d84964ff5a1a7b6cd0ede0e7de389 205 Pfam PF09335 SNARE associated Golgi protein 43 161 3.5E-21 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_2744 8707bff57337a8854420f544806014fe 71 Pfam PF13131 Protein of unknown function (DUF3951) 11 51 2.0E-7 T 13-10-2018 IPR025028 Protein of unknown function DUF3951 BMD_2789 8c080e95ad2ec1aa458e63fb8160a7ab 210 SUPERFAMILY SSF53335 1 207 2.34E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_2789 8c080e95ad2ec1aa458e63fb8160a7ab 210 Pfam PF13847 Methyltransferase domain 1 112 4.4E-10 T 13-10-2018 IPR025714 Methyltransferase domain BMD_2789 8c080e95ad2ec1aa458e63fb8160a7ab 210 Gene3D G3DSA:3.40.50.150 1 209 2.4E-53 T 13-10-2018 BMD_0857 9ce470b26747839bec79f55e80e89c33 372 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 198 358 1.1E-34 T 13-10-2018 IPR017516 AbrB duplication BMD_0857 9ce470b26747839bec79f55e80e89c33 372 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 12 171 3.5E-37 T 13-10-2018 IPR017516 AbrB duplication BMD_0857 9ce470b26747839bec79f55e80e89c33 372 PIRSF PIRSF038991 1 367 8.3E-88 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 BMD_0857 9ce470b26747839bec79f55e80e89c33 372 Pfam PF05145 Transition state regulatory protein AbrB 33 358 6.3E-83 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 BMD_2371 6f7e3e98bc37448750f287cbfc1e7323 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 288 3.1E-14 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2371 6f7e3e98bc37448750f287cbfc1e7323 294 SUPERFAMILY SSF161098 24 294 1.44E-70 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2371 6f7e3e98bc37448750f287cbfc1e7323 294 Gene3D G3DSA:1.10.3720.10 18 282 3.8E-63 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4379 3d5a3db044f63cff06435968199563ef 116 Gene3D G3DSA:3.30.750.24 2 116 7.1E-35 T 13-10-2018 IPR036513 STAS domain superfamily BMD_4379 3d5a3db044f63cff06435968199563ef 116 Pfam PF01740 STAS domain 5 109 9.6E-27 T 13-10-2018 IPR002645 STAS domain BMD_4379 3d5a3db044f63cff06435968199563ef 116 TIGRFAM TIGR02886 spore_II_AA: anti-sigma F factor antagonist 5 110 1.5E-48 T 13-10-2018 IPR014237 Anti-sigma F factor antagonist GO:0006355|GO:0030435|GO:0045152 BMD_4379 3d5a3db044f63cff06435968199563ef 116 SUPERFAMILY SSF52091 3 113 1.03E-31 T 13-10-2018 IPR036513 STAS domain superfamily BMD_4379 3d5a3db044f63cff06435968199563ef 116 TIGRFAM TIGR00377 ant_ant_sig: anti-anti-sigma factor 2 107 1.5E-37 T 13-10-2018 IPR003658 Anti-sigma factor antagonist GO:0006355|GO:0045152 BMD_0012 91610ceccbae7100742d41f30ad43525 321 Pfam PF14175 YaaC-like Protein 11 312 9.6E-95 T 13-10-2018 IPR026988 YaaC-like protein BMD_3385 ce40f34a761d1eb4ba981378d0c0f34d 211 SUPERFAMILY SSF52218 1 210 6.37E-50 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3385 ce40f34a761d1eb4ba981378d0c0f34d 211 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 211 27.785 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 BMD_3385 ce40f34a761d1eb4ba981378d0c0f34d 211 Gene3D G3DSA:3.40.50.360 1 211 2.4E-58 T 13-10-2018 IPR029039 Flavoprotein-like superfamily BMD_3385 ce40f34a761d1eb4ba981378d0c0f34d 211 Pfam PF02525 Flavodoxin-like fold 3 203 3.0E-43 T 13-10-2018 IPR003680 Flavodoxin-like fold BMD_0889 8fe9bbbeb915c15cc1a3857492998f2d 81 SUPERFAMILY SSF54862 3 72 2.33E-11 T 13-10-2018 BMD_0889 8fe9bbbeb915c15cc1a3857492998f2d 81 PRINTS PR00352 3Fe-4S ferredoxin signature 17 27 2.8E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_0889 8fe9bbbeb915c15cc1a3857492998f2d 81 PRINTS PR00352 3Fe-4S ferredoxin signature 6 17 2.8E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_0889 8fe9bbbeb915c15cc1a3857492998f2d 81 PRINTS PR00352 3Fe-4S ferredoxin signature 54 66 2.8E-7 T 13-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 BMD_0889 8fe9bbbeb915c15cc1a3857492998f2d 81 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 6 68 8.7E-20 T 13-10-2018 BMD_0889 8fe9bbbeb915c15cc1a3857492998f2d 81 Gene3D G3DSA:3.30.70.20 2 81 2.1E-31 T 13-10-2018 BMD_3703 2269454c9f89ec45dbf7f0efa763d1ec 146 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 142 1.0E-44 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ BMD_4333 2421439aab0ffd16b910e6b7c66a8c32 58 Pfam PF17313 Family of unknown function (DUF5359) 2 56 6.4E-26 T 13-10-2018 IPR035281 Protein of unknown function DUF5359 BMD_4333 2421439aab0ffd16b910e6b7c66a8c32 58 ProDom PD052359 YPFB 1 55 6.0E-8 T 13-10-2018 IPR035281 Protein of unknown function DUF5359 BMD_4280 15c35480a92b09eff2e9ee068614f9d1 255 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 232 8.8E-43 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_4280 15c35480a92b09eff2e9ee068614f9d1 255 SUPERFAMILY SSF52096 7 251 3.81E-58 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_4280 15c35480a92b09eff2e9ee068614f9d1 255 Gene3D G3DSA:3.90.226.10 4 255 7.8E-60 T 13-10-2018 BMD_4280 15c35480a92b09eff2e9ee068614f9d1 255 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 101 121 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BMD_1105 b3c765d3cd69f0653af0befad5e1d5bb 263 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 5 239 2.0E-42 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 BMD_1105 b3c765d3cd69f0653af0befad5e1d5bb 263 Pfam PF02811 PHP domain 5 192 6.3E-13 T 13-10-2018 IPR004013 PHP domain GO:0003824 BMD_1105 b3c765d3cd69f0653af0befad5e1d5bb 263 Gene3D G3DSA:3.20.20.140 2 259 3.6E-67 T 13-10-2018 BMD_1105 b3c765d3cd69f0653af0befad5e1d5bb 263 SUPERFAMILY SSF89550 3 259 3.66E-47 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BMD_4985 fe5f08c90475b97558934d7a1a035121 99 Gene3D G3DSA:3.40.30.10 3 99 5.0E-11 T 13-10-2018 BMD_4985 fe5f08c90475b97558934d7a1a035121 99 SUPERFAMILY SSF52833 6 98 1.76E-14 T 13-10-2018 IPR036249 Thioredoxin-like superfamily BMD_4985 fe5f08c90475b97558934d7a1a035121 99 Pfam PF00085 Thioredoxin 5 86 6.5E-7 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 BMD_2208 5660f07cdb525c4e5be529a05e54d6fd 108 Pfam PF11181 Heat induced stress protein YflT 4 103 1.2E-29 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_0066 2ce095531200a35693ce495e6d97d033 96 Gene3D G3DSA:3.30.1120.40 1 96 4.1E-39 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 BMD_0066 2ce095531200a35693ce495e6d97d033 96 Hamap MF_00819 Putative septation protein SpoVG [spoVG]. 1 92 28.49 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 BMD_0066 2ce095531200a35693ce495e6d97d033 96 Pfam PF04026 SpoVG 1 81 2.7E-36 T 13-10-2018 IPR007170 Stage V sporulation protein G GO:0030435 BMD_0066 2ce095531200a35693ce495e6d97d033 96 SUPERFAMILY SSF160537 1 89 6.02E-34 T 13-10-2018 IPR036751 Stage V sporulation protein G superfamily GO:0030435 BMD_3129 e0891fedae320a4b3d1a32ca3670db28 123 SUPERFAMILY SSF48371 4 120 6.91E-5 T 13-10-2018 IPR016024 Armadillo-type fold BMD_1065 1f01186abb354c19f289dfc2051e2661 154 Gene3D G3DSA:3.90.1720.10 27 154 2.8E-46 T 13-10-2018 BMD_1065 1f01186abb354c19f289dfc2051e2661 154 SUPERFAMILY SSF54001 37 154 3.19E-45 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BMD_1065 1f01186abb354c19f289dfc2051e2661 154 Pfam PF00877 NlpC/P60 family 49 152 1.2E-36 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BMD_0956 0b34011c546a4a1d57130c426d1d9a2f 58 Pfam PF13113 Protein of unknown function (DUF3970) 1 55 6.2E-30 T 13-10-2018 IPR025088 Protein of unknown function DUF3970 BMD_0765 bd50bccb120b575d7a182781b9bd34e6 461 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_0765 bd50bccb120b575d7a182781b9bd34e6 461 Pfam PF00324 Amino acid permease 15 442 1.3E-122 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_0765 bd50bccb120b575d7a182781b9bd34e6 461 Gene3D G3DSA:1.20.1740.10 6 460 1.9E-74 T 13-10-2018 BMD_0765 bd50bccb120b575d7a182781b9bd34e6 461 PIRSF PIRSF006060 2 461 1.3E-83 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_2098 7957753a59bae781178d6320bf546dd1 248 Pfam PF03073 TspO/MBR family 18 160 2.4E-10 T 13-10-2018 IPR004307 TspO/MBR-related protein GO:0016021 BMD_2098 7957753a59bae781178d6320bf546dd1 248 Gene3D G3DSA:1.20.1260.100 7 165 3.9E-7 T 13-10-2018 IPR038330 TspO/MBR-related superfamily BMD_0540 eb314509841074a327d772298fb7a250 469 Pfam PF04293 SpoVR like protein 5 407 6.2E-163 T 13-10-2018 IPR007390 Sporulation stage V, protein R BMD_0206 7d605bf0d12e28aa2dc9c6f42d002b87 268 Gene3D G3DSA:1.10.3720.10 6 261 6.3E-41 T 13-10-2018 IPR035906 MetI-like superfamily BMD_0206 7d605bf0d12e28aa2dc9c6f42d002b87 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 253 1.2E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_0206 7d605bf0d12e28aa2dc9c6f42d002b87 268 SUPERFAMILY SSF161098 3 252 2.52E-50 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1971 23604b5b4a54a38f2c1986e33d24528f 253 Gene3D G3DSA:1.10.10.1320 4 99 9.1E-11 T 13-10-2018 BMD_1971 23604b5b4a54a38f2c1986e33d24528f 253 Pfam PF10099 Anti-sigma-K factor rskA 56 249 4.7E-25 T 13-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 BMD_0548 bea9bfbd60b9b49bd97592ff895c49a0 132 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 8 114 1.1E-20 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BMD_0548 bea9bfbd60b9b49bd97592ff895c49a0 132 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 119 16.215 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BMD_4376 5dfa2102a93525e81120a9ea2d6c13f4 206 Pfam PF12164 Stage V sporulation protein AA 3 88 2.4E-19 T 13-10-2018 IPR021997 Stage V sporulation protein AA BMD_4376 5dfa2102a93525e81120a9ea2d6c13f4 206 Gene3D G3DSA:2.60.480.10 1 95 1.3E-11 T 13-10-2018 IPR038548 Stage V sporulation protein AA, N-terminal domain superfamily BMD_1033 2cf8f7726ed5fc3a97da4cebd9f19dee 197 Pfam PF16291 Domain of unknown function (DUF4937 2 88 1.2E-34 T 13-10-2018 IPR032555 Domain of unknown function DUF4937 BMD_1033 2cf8f7726ed5fc3a97da4cebd9f19dee 197 SUPERFAMILY SSF54909 1 77 2.41E-8 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_1825 000dc0624f9bd876bc918a49db8a846f 450 Pfam PF05525 Branched-chain amino acid transport protein 10 430 4.3E-162 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BMD_1825 000dc0624f9bd876bc918a49db8a846f 450 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 421 6.1E-156 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BMD_2025 039dfc45e4117b4efd3ff256e5b1ba44 240 Pfam PF01687 Riboflavin kinase 14 129 7.1E-31 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BMD_2025 039dfc45e4117b4efd3ff256e5b1ba44 240 SUPERFAMILY SSF82114 13 136 2.14E-33 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BMD_2025 039dfc45e4117b4efd3ff256e5b1ba44 240 Gene3D G3DSA:2.40.30.30 14 141 2.5E-37 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BMD_2025 039dfc45e4117b4efd3ff256e5b1ba44 240 SMART SM00904 14 132 6.6E-34 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BMD_4217 c99ed4062f214f9af1bb3b062dda7046 120 Pfam PF03780 Asp23 family, cell envelope-related function 9 116 1.9E-37 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 BMD_4735 6dda18ca6f12d4830908a0e535ecb34c 86 Pfam PF06961 Protein of unknown function (DUF1294) 13 67 1.9E-23 T 13-10-2018 IPR010718 Protein of unknown function DUF1294 BMD_4735 6dda18ca6f12d4830908a0e535ecb34c 86 PIRSF PIRSF002599 2 85 8.6E-10 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 BMD_1607 efdd0fa9176dd43f3548ecfa7bbf28d1 69 Gene3D G3DSA:1.10.1660.10 1 69 1.5E-7 T 13-10-2018 BMD_1607 efdd0fa9176dd43f3548ecfa7bbf28d1 69 SUPERFAMILY SSF46955 1 56 2.47E-8 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily BMD_1748 cc495bec3fd76f9cce7b2dfcfe25c15c 408 Pfam PF05504 Spore germination B3/ GerAC like, C-terminal 228 393 5.9E-37 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1748 cc495bec3fd76f9cce7b2dfcfe25c15c 408 TIGRFAM TIGR02887 spore_ger_x_C: germination protein, Ger(x)C family 8 395 1.2E-99 T 13-10-2018 IPR008844 Spore germination GerAC GO:0009847|GO:0016020 BMD_1748 cc495bec3fd76f9cce7b2dfcfe25c15c 408 Gene3D G3DSA:3.30.300.210 245 397 3.8E-35 T 13-10-2018 IPR038501 Spore germination GerAC superfamily BMD_2033 dc12076c28108165b44efc670545d913 181 Pfam PF16107 Domain of unknown function (DUF4825) 48 133 2.5E-10 T 13-10-2018 IPR032250 Domain of unknown function DUF4825 BMD_3399 bf6180ee17a771c64771459badba78bb 235 Gene3D G3DSA:3.30.2010.10 137 229 8.3E-19 T 13-10-2018 BMD_3399 bf6180ee17a771c64771459badba78bb 235 Pfam PF01863 Protein of unknown function DUF45 22 227 2.7E-61 T 13-10-2018 IPR002725 Protein of unknown function DUF45 BMD_5111 b819aeaab5d774407a95b687b1be7691 332 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 96 245 1.2E-43 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_5111 b819aeaab5d774407a95b687b1be7691 332 Gene3D G3DSA:1.10.260.150 60 332 7.6E-89 T 13-10-2018 BMD_5111 b819aeaab5d774407a95b687b1be7691 332 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 97 245 3.1E-48 T 13-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain BMD_1188 0c4e893a4240d9f59bb4080f54f30c6a 265 Pfam PF13468 Glyoxalase-like domain 5 191 1.6E-30 T 13-10-2018 IPR025870 Glyoxalase-like domain BMD_1188 0c4e893a4240d9f59bb4080f54f30c6a 265 Gene3D G3DSA:3.10.180.10 2 160 2.6E-48 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_1188 0c4e893a4240d9f59bb4080f54f30c6a 265 SUPERFAMILY SSF54593 3 199 1.59E-6 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_2630 7b88928f5396b1831ef7197f92bcba9c 134 Pfam PF06803 Protein of unknown function (DUF1232) 59 94 2.6E-13 T 13-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 BMD_2630 7b88928f5396b1831ef7197f92bcba9c 134 PIRSF PIRSF031804 1 124 2.1E-39 T 13-10-2018 IPR016983 Uncharacterised conserved protein UCP031804 BMD_0850 c1b931e79d94bd883451364f8b1a9389 210 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 8 200 2.1E-35 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BMD_0850 c1b931e79d94bd883451364f8b1a9389 210 SUPERFAMILY SSF56529 6 200 2.22E-46 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_0850 c1b931e79d94bd883451364f8b1a9389 210 Gene3D G3DSA:3.90.850.10 1 207 3.7E-52 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_0797 bfeb906bf0b6a690812f9a08cf706de1 550 Pfam PF16957 Malonate decarboxylase, alpha subunit, transporter 10 550 1.5E-295 T 13-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 BMD_0797 bfeb906bf0b6a690812f9a08cf706de1 550 TIGRFAM TIGR01110 mdcA: malonate decarboxylase, alpha subunit 11 550 7.3E-285 T 13-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 BMD_0797 bfeb906bf0b6a690812f9a08cf706de1 550 SUPERFAMILY SSF100950 41 278 2.3E-30 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_0797 bfeb906bf0b6a690812f9a08cf706de1 550 Gene3D G3DSA:3.40.1080.10 38 243 4.1E-17 T 13-10-2018 BMD_0797 bfeb906bf0b6a690812f9a08cf706de1 550 SUPERFAMILY SSF100950 227 495 5.33E-22 T 13-10-2018 IPR037171 NagB/RpiA transferase-like BMD_1395 1f40346e155c26e2d338e6886723424a 220 ProDom PD210561 YWRJ 2 220 9.0E-72 T 13-10-2018 IPR020173 Uncharacterised protein family YwrJ BMD_1100 1a7367e72c2c34781ceff1828b47c217 321 Pfam PF06166 Protein of unknown function (DUF979) 9 319 2.1E-123 T 13-10-2018 IPR009323 Protein of unknown function DUF979 BMD_1238 132df6615eb7d590f12f3a4fced75f48 358 Gene3D G3DSA:3.40.50.2300 161 333 7.5E-81 T 13-10-2018 BMD_1238 132df6615eb7d590f12f3a4fced75f48 358 Pfam PF13407 Periplasmic binding protein domain 62 320 7.6E-37 T 13-10-2018 IPR025997 Periplasmic binding protein BMD_1238 132df6615eb7d590f12f3a4fced75f48 358 SUPERFAMILY SSF53822 58 336 5.44E-52 T 13-10-2018 IPR028082 Periplasmic binding protein-like I BMD_1238 132df6615eb7d590f12f3a4fced75f48 358 Gene3D G3DSA:3.40.50.2300 62 327 7.5E-81 T 13-10-2018 BMD_0071 915f8eaf625c611f99eace0f4e571f40 76 Pfam PF10955 Protein of unknown function (DUF2757) 1 76 2.5E-36 T 13-10-2018 IPR020115 Anti-sigma-F factor Fin GO:0010468 BMD_0071 915f8eaf625c611f99eace0f4e571f40 76 ProDom PD057826 YABK 4 76 5.0E-25 T 13-10-2018 IPR020115 Anti-sigma-F factor Fin GO:0010468 BMD_1550 bf1e259cc2b24f8f51d1d8b8dbf16190 210 Pfam PF01810 LysE type translocator 14 201 3.4E-36 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_0844 7bd8330e86e2cbc8835b4e36c7529381 60 Pfam PF08863 YolD-like protein 1 59 1.8E-9 T 13-10-2018 IPR014962 YolD-like protein BMD_3576 937074392b5019cb5e0483b537ab6050 160 Gene3D G3DSA:3.30.1330.40 1 154 5.3E-57 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BMD_3576 937074392b5019cb5e0483b537ab6050 160 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 11 152 3.0E-29 T 13-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like BMD_3576 937074392b5019cb5e0483b537ab6050 160 SUPERFAMILY SSF55298 9 153 5.65E-50 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BMD_0371 caa730fbd167bbf9b8994564d22de805 75 Hamap MF_00829 UPF0435 protein . 6 73 20.544 T 13-10-2018 IPR009507 Protein of unknown function UPF0435 BMD_0371 caa730fbd167bbf9b8994564d22de805 75 Pfam PF06569 Protein of unknown function (DUF1128) 3 73 7.9E-34 T 13-10-2018 IPR009507 Protein of unknown function UPF0435 BMD_2426 f745bdb479768ea3a2a0a81b028f867c 71 Pfam PF04070 Domain of unknown function (DUF378) 2 56 3.2E-15 T 13-10-2018 IPR007211 Protein of unknown function DUF378 BMD_2906 4fd62157958c9231bb6cfec0f78843a0 113 Pfam PF06279 Protein of unknown function (DUF1033) 5 108 4.3E-26 T 13-10-2018 IPR010434 Protein of unknown function DUF1033 BMD_1871 801cd35d92bec9c436ad545464445b7a 444 Pfam PF03600 Citrate transporter 24 383 1.9E-53 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BMD_1871 801cd35d92bec9c436ad545464445b7a 444 PRINTS PR00758 Arsenical pump membrane protein signature 227 252 3.6E-8 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1871 801cd35d92bec9c436ad545464445b7a 444 PRINTS PR00758 Arsenical pump membrane protein signature 287 311 3.6E-8 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1871 801cd35d92bec9c436ad545464445b7a 444 PRINTS PR00758 Arsenical pump membrane protein signature 110 134 3.6E-8 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_1871 801cd35d92bec9c436ad545464445b7a 444 PRINTS PR00758 Arsenical pump membrane protein signature 379 404 3.6E-8 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 BMD_2103 5c9abf3741d43ddeef09d55a6aa6f8d1 241 Pfam PF06283 Trehalose utilisation 3 218 5.1E-37 T 13-10-2018 IPR029010 ThuA-like domain BMD_2103 5c9abf3741d43ddeef09d55a6aa6f8d1 241 PIRSF PIRSF030013 1 240 2.2E-131 T 13-10-2018 IPR009381 Trehalose catabolism protein, ThuA, prokaryote BMD_2103 5c9abf3741d43ddeef09d55a6aa6f8d1 241 SUPERFAMILY SSF52317 2 235 8.01E-66 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2103 5c9abf3741d43ddeef09d55a6aa6f8d1 241 Gene3D G3DSA:3.40.50.880 1 241 7.2E-116 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like BMD_2248 4cee5cbffa12760d27ad3e513137beb7 201 Gene3D G3DSA:3.50.30.100 1 180 1.9E-50 T 13-10-2018 BMD_2248 4cee5cbffa12760d27ad3e513137beb7 201 Pfam PF03737 Aldolase/RraA 10 158 1.5E-39 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein BMD_2248 4cee5cbffa12760d27ad3e513137beb7 201 SUPERFAMILY SSF89562 8 169 1.96E-44 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily BMD_1416 07533cc25ffc23156383aca20f4bf201 208 Pfam PF04012 PspA/IM30 family 3 189 9.0E-18 T 13-10-2018 IPR007157 PspA/IM30 BMD_0519 0a40e6d4905cadf8b70b5e07ff6d6924 380 Pfam PF01594 AI-2E family transporter 40 364 8.9E-87 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like BMD_0447 ea000980e494a50f216be2187d521096 254 Pfam PF11553 Protein of unknown function (DUF3231) 1 80 2.7E-12 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_0447 ea000980e494a50f216be2187d521096 254 Pfam PF11553 Protein of unknown function (DUF3231) 91 251 4.2E-45 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_0447 ea000980e494a50f216be2187d521096 254 Gene3D G3DSA:1.20.1260.10 93 238 4.6E-6 T 13-10-2018 IPR012347 Ferritin-like BMD_3009 1ba59c8163c974922c542d01c89850f3 349 Pfam PF05425 Copper resistance protein D 166 262 1.4E-12 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 BMD_1805 33a200b46fd204cad57c73a933b7cc7f 277 Gene3D G3DSA:3.30.750.24 156 274 1.1E-35 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1805 33a200b46fd204cad57c73a933b7cc7f 277 Pfam PF01740 STAS domain 162 265 1.1E-14 T 13-10-2018 IPR002645 STAS domain BMD_1805 33a200b46fd204cad57c73a933b7cc7f 277 SUPERFAMILY SSF52091 161 269 6.28E-18 T 13-10-2018 IPR036513 STAS domain superfamily BMD_3570 717f72ef36d8b459927e6842b5574fa9 67 Gene3D G3DSA:3.30.429.10 1 67 7.5E-19 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_3570 717f72ef36d8b459927e6842b5574fa9 67 SUPERFAMILY SSF55331 2 60 5.07E-15 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily BMD_3570 717f72ef36d8b459927e6842b5574fa9 67 Pfam PF01361 Tautomerase enzyme 2 57 2.9E-11 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 BMD_2808 a7eca13608cf90bccdd133288f7732ac 140 Pfam PF14101 Domain of unknown function (DUF4275) 2 137 1.3E-42 T 13-10-2018 IPR025454 Protein of unknown function DUF4275 BMD_2957 8496965e3da678e5a9ef7a02f00a0831 80 Pfam PF10676 Spore germination protein gerPA/gerPF 1 71 1.5E-22 T 13-10-2018 IPR019618 Spore germination protein GerPA/GerPF BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 289 315 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 189 208 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 224 243 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 46 66 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 324 343 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 351 371 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 PRINTS PR00173 Glutamate-aspartate symporter signature 76 101 2.3E-37 T 13-10-2018 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 SUPERFAMILY SSF118215 11 398 2.88E-105 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 Pfam PF00375 Sodium:dicarboxylate symporter family 12 396 3.3E-107 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BMD_3407 98d211e180172276e52f1767ae4b4b85 408 Gene3D G3DSA:1.10.3860.10 2 407 7.7E-115 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BMD_2912 c953015d148b7434dbd0b5890a9b6cd5 356 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 349 1.4E-165 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 BMD_2912 c953015d148b7434dbd0b5890a9b6cd5 356 Pfam PF00296 Luciferase-like monooxygenase 1 325 4.1E-86 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BMD_2912 c953015d148b7434dbd0b5890a9b6cd5 356 SUPERFAMILY SSF51679 1 351 9.68E-94 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_2912 c953015d148b7434dbd0b5890a9b6cd5 356 Gene3D G3DSA:3.20.20.30 1 356 5.6E-138 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BMD_3281 b710eca8ee3a1e84d67e9ddd2156bff5 190 Gene3D G3DSA:3.40.630.30 1 178 1.6E-51 T 13-10-2018 BMD_3281 b710eca8ee3a1e84d67e9ddd2156bff5 190 SUPERFAMILY SSF55729 1 175 1.48E-48 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3281 b710eca8ee3a1e84d67e9ddd2156bff5 190 Pfam PF13302 Acetyltransferase (GNAT) domain 7 151 1.5E-27 T 13-10-2018 IPR000182 GNAT domain BMD_0062 57c65dd4afa64906dec53af415690e71 56 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 11 54 2.7E-6 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_0062 57c65dd4afa64906dec53af415690e71 56 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 13 22 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_0125 3deb8d551ced9dc0b12536d1350b69ab 200 SUPERFAMILY SSF53335 16 199 4.63E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BMD_0125 3deb8d551ced9dc0b12536d1350b69ab 200 Pfam PF05175 Methyltransferase small domain 29 195 3.3E-50 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BMD_0125 3deb8d551ced9dc0b12536d1350b69ab 200 Gene3D G3DSA:3.40.50.150 6 200 1.7E-46 T 13-10-2018 BMD_2642 fa11a48e95716a82419cd1ff0495b5f7 368 Pfam PF12698 ABC-2 family transporter protein 20 359 3.3E-28 T 13-10-2018 BMD_0964 e44fa21010e20bdd519ce5db4541c2ca 216 Pfam PF03006 Haemolysin-III related 8 204 6.1E-40 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BMD_0964 e44fa21010e20bdd519ce5db4541c2ca 216 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 11 211 1.3E-65 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 BMD_3342 daba70398afbdf80652df5096b59adc0 258 Pfam PF01925 Sulfite exporter TauE/SafE 9 252 1.6E-44 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BMD_3910 5be151bc995d729b0b45dbdd86ba7a7d 121 Gene3D G3DSA:2.60.120.10 7 105 2.6E-5 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3910 5be151bc995d729b0b45dbdd86ba7a7d 121 SUPERFAMILY SSF51182 17 88 7.12E-5 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_0410 1283a701804846bcc865b199d13ac286 362 Pfam PF06081 Aromatic acid exporter family member 1 1 142 1.6E-40 T 13-10-2018 IPR010343 Aromatic acid exporter family member 1 BMD_0287 1979530fa73fc528bd113bab6a12e26d 232 Hamap MF_00112 Geranylgeranylglyceryl phosphate synthase [pcrB]. 3 226 28.946 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 BMD_0287 1979530fa73fc528bd113bab6a12e26d 232 Pfam PF01884 PcrB family 2 226 1.3E-84 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 BMD_0287 1979530fa73fc528bd113bab6a12e26d 232 TIGRFAM TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein 8 223 7.8E-80 T 13-10-2018 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase GO:0016765 BMD_0287 1979530fa73fc528bd113bab6a12e26d 232 Gene3D G3DSA:3.20.20.390 1 230 7.5E-97 T 13-10-2018 IPR038597 GGGP/HepGP synthase superfamily BMD_0287 1979530fa73fc528bd113bab6a12e26d 232 SUPERFAMILY SSF51395 4 222 9.52E-55 T 13-10-2018 BMD_2950 41c9f0652409aa7612c8dc779298f147 50 Pfam PF11121 Protein of unknown function (DUF2639) 3 39 3.8E-23 T 13-10-2018 IPR022580 Protein of unknown function DUF2639 BMD_2950 41c9f0652409aa7612c8dc779298f147 50 ProDom PD049467 YFLJ 3 38 4.0E-5 T 13-10-2018 IPR022580 Protein of unknown function DUF2639 BMD_5131 0fedd3881efc87d7c765a0fcdd823d7e 246 Gene3D G3DSA:3.30.360.40 171 246 1.1E-30 T 13-10-2018 BMD_5131 0fedd3881efc87d7c765a0fcdd823d7e 246 Gene3D G3DSA:3.30.2030.10 31 170 4.7E-35 T 13-10-2018 BMD_5131 0fedd3881efc87d7c765a0fcdd823d7e 246 Pfam PF08680 TATA-box binding 52 246 2.0E-47 T 13-10-2018 IPR014794 TATA-box binding BMD_5131 0fedd3881efc87d7c765a0fcdd823d7e 246 SUPERFAMILY SSF143842 35 243 1.28E-46 T 13-10-2018 IPR036209 YwmB-like superfamily BMD_2090 7c6325cd2daf244cd4a736534cb66725 161 Pfam PF14039 YusW-like protein 60 149 1.3E-24 T 13-10-2018 IPR025623 YusW-like protein BMD_3104 cfbd8fcaa3026f4ef8f8d75eaba1189a 496 SUPERFAMILY SSF103473 9 451 1.28E-40 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3104 cfbd8fcaa3026f4ef8f8d75eaba1189a 496 Pfam PF13347 MFS/sugar transport protein 16 437 1.4E-74 T 13-10-2018 BMD_3104 cfbd8fcaa3026f4ef8f8d75eaba1189a 496 Gene3D G3DSA:1.20.1250.20 234 448 7.7E-13 T 13-10-2018 BMD_3104 cfbd8fcaa3026f4ef8f8d75eaba1189a 496 Gene3D G3DSA:1.20.1250.20 6 205 8.1E-17 T 13-10-2018 BMD_0839 3e5207bbd8a07d724a6fb12de0df2a34 191 Pfam PF01794 Ferric reductase like transmembrane component 22 142 8.4E-11 T 13-10-2018 IPR013130 Ferric reductase transmembrane component-like domain BMD_0807 1d7c16de7723913a075ca8ccd7dbd04c 67 Pfam PF11755 Protein of unknown function (DUF3311) 9 64 1.5E-13 T 13-10-2018 IPR021741 Protein of unknown function DUF3311 BMD_2015 c44499d0345bbcac710554eb4ef404bb 447 PIRSF PIRSF005348 10 446 1.5E-172 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 BMD_2015 c44499d0345bbcac710554eb4ef404bb 447 Pfam PF03390 2-hydroxycarboxylate transporter family 30 440 1.3E-159 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 BMD_2199 8371403b2d6322cb28000a1f79b522e3 466 Pfam PF03553 Na+/H+ antiporter family 154 462 9.5E-35 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 BMD_2207 ba702eba99ad303ce6a55e493eeba5a6 184 Pfam PF11553 Protein of unknown function (DUF3231) 42 177 2.9E-22 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2207 ba702eba99ad303ce6a55e493eeba5a6 184 Gene3D G3DSA:1.20.1260.10 15 167 4.2E-52 T 13-10-2018 IPR012347 Ferritin-like BMD_1553 333809f08701a4079561f4659130fda7 50 Pfam PF14139 YpzG-like protein 1 49 1.2E-22 T 13-10-2018 IPR025413 YpzG-like protein BMD_0442 d5dffb9b40cc43011af550b2ef226464 295 Pfam PF12671 Putative amidase domain 137 288 1.4E-36 T 13-10-2018 IPR024301 Putative amidase domain BMD_3864 4fa293cc3da69f67adb6d8369a3a8aff 272 Pfam PF00494 Squalene/phytoene synthase 15 207 5.4E-22 T 13-10-2018 BMD_3864 4fa293cc3da69f67adb6d8369a3a8aff 272 SUPERFAMILY SSF48576 13 254 1.58E-40 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_3864 4fa293cc3da69f67adb6d8369a3a8aff 272 Gene3D G3DSA:1.10.600.10 4 272 7.9E-59 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily BMD_1332 4587787637a73b9697c5d0c5c876752d 41 Pfam PF13790 SR1 protein 1 37 4.1E-22 T 13-10-2018 IPR025236 SR1 protein BMD_0567 c851421db2918227e019b1a5f521ba88 449 Pfam PF14398 YheC/D like ATP-grasp 183 436 2.8E-79 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D BMD_0567 c851421db2918227e019b1a5f521ba88 449 SUPERFAMILY SSF56059 193 420 8.7E-12 T 13-10-2018 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 PRINTS PR01035 Tetracycline resistance protein signature 14 30 8.8E-24 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 PRINTS PR01035 Tetracycline resistance protein signature 158 178 8.8E-24 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 PRINTS PR01035 Tetracycline resistance protein signature 329 352 8.8E-24 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 PRINTS PR01035 Tetracycline resistance protein signature 130 152 8.8E-24 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 PRINTS PR01035 Tetracycline resistance protein signature 269 290 8.8E-24 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 PRINTS PR01035 Tetracycline resistance protein signature 71 95 8.8E-24 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 Gene3D G3DSA:1.20.1250.20 2 377 9.5E-65 T 13-10-2018 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 Pfam PF07690 Major Facilitator Superfamily 8 221 1.2E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1191 ec0d1a80120b91f878fc4264f5a376a6 389 SUPERFAMILY SSF103473 3 374 1.83E-60 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3949 4f52371c42ad2098c7ec6598e9140c98 132 Pfam PF13673 Acetyltransferase (GNAT) domain 15 129 4.4E-16 T 13-10-2018 IPR000182 GNAT domain BMD_3949 4f52371c42ad2098c7ec6598e9140c98 132 Gene3D G3DSA:3.40.630.30 3 128 7.2E-24 T 13-10-2018 BMD_3949 4f52371c42ad2098c7ec6598e9140c98 132 SUPERFAMILY SSF55729 17 124 1.21E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_3057 ecd4156568d5140ad8e91a4eeab7cc76 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 75 4.6E-20 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BMD_3057 ecd4156568d5140ad8e91a4eeab7cc76 94 SUPERFAMILY SSF54909 1 79 2.2E-24 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel BMD_3057 ecd4156568d5140ad8e91a4eeab7cc76 94 Gene3D G3DSA:3.30.70.100 1 94 2.4E-26 T 13-10-2018 BMD_4371 c32870f00769e5c30331c5ff97bc8100 188 Pfam PF14097 Stage V sporulation protein AE1 5 184 3.4E-79 T 13-10-2018 IPR025914 Stage V sporulation protein AE BMD_0988 318a350d2019647c427009de81a579bd 210 SUPERFAMILY SSF51735 1 208 6.36E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily BMD_0988 318a350d2019647c427009de81a579bd 210 Pfam PF13460 NAD(P)H-binding 7 194 5.0E-21 T 13-10-2018 IPR016040 NAD(P)-binding domain BMD_0988 318a350d2019647c427009de81a579bd 210 Gene3D G3DSA:3.40.50.720 1 208 7.4E-48 T 13-10-2018 BMD_1389 1f7ccb9a7845130f9f05f18a37a52c96 64 Pfam PF14178 YppF-like protein 1 58 4.7E-29 T 13-10-2018 IPR025553 YppF-like protein BMD_1389 1f7ccb9a7845130f9f05f18a37a52c96 64 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 59 4.0E-5 T 13-10-2018 BMD_1696 932947a322e5de85bc252dc77479bf01 63 SUPERFAMILY SSF103481 2 59 7.98E-8 T 13-10-2018 BMD_1696 932947a322e5de85bc252dc77479bf01 63 Pfam PF00892 EamA-like transporter family 1 55 1.7E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_4171 15100b6445c0a173fc9484c7e0967149 69 Pfam PF06289 Flagellar protein (FlbD) 1 58 7.5E-27 T 13-10-2018 IPR009384 Swarming motility protein SwrD-like BMD_4032 78870cd8419ebda85e59227b15917774 489 SUPERFAMILY SSF51905 1 480 1.22E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4032 78870cd8419ebda85e59227b15917774 489 Gene3D G3DSA:3.50.50.60 145 255 3.9E-9 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4032 78870cd8419ebda85e59227b15917774 489 Gene3D G3DSA:3.50.50.60 1 144 6.6E-16 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BMD_4032 78870cd8419ebda85e59227b15917774 489 PIRSF PIRSF038984 121 481 4.1E-21 T 13-10-2018 IPR028348 FAD dependent protein BMD_4032 78870cd8419ebda85e59227b15917774 489 PIRSF PIRSF038984 1 115 5.7E-7 T 13-10-2018 IPR028348 FAD dependent protein BMD_4356 af91f7c1fa84a170b07f8deb2c2cfb03 540 Pfam PF05140 ResB-like family 443 519 2.2E-17 T 13-10-2018 IPR007816 ResB-like domain BMD_4356 af91f7c1fa84a170b07f8deb2c2cfb03 540 Pfam PF05140 ResB-like family 64 429 1.9E-76 T 13-10-2018 IPR007816 ResB-like domain BMD_4929 bd31977492263cb25f5f43d14feab090 94 PIRSF PIRSF028784 1 92 4.3E-30 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 BMD_4929 bd31977492263cb25f5f43d14feab090 94 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 31 83 9.4E-19 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 BMD_2381 8ece89d5b8b8edec86f80a15514ba17f 120 SUPERFAMILY SSF46458 3 117 3.49E-34 T 13-10-2018 IPR009050 Globin-like superfamily BMD_2381 8ece89d5b8b8edec86f80a15514ba17f 120 Gene3D G3DSA:1.10.490.10 1 120 1.8E-40 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BMD_2381 8ece89d5b8b8edec86f80a15514ba17f 120 PIRSF PIRSF002030 1 120 2.7E-43 T 13-10-2018 IPR016339 Truncated hemoglobin, group 1 BMD_2381 8ece89d5b8b8edec86f80a15514ba17f 120 Pfam PF01152 Bacterial-like globin 4 118 3.8E-27 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 BMD_0485 4ec1c234d453f4b63d2fb1e0b3d37db9 163 Pfam PF11181 Heat induced stress protein YflT 6 122 2.8E-17 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_5001 c08bf72072249d2781b99b9fffe68d79 57 Pfam PF13217 Protein of unknown function (DUF4025) 8 53 6.5E-18 T 13-10-2018 IPR025100 Protein of unknown function DUF4025 BMD_2236 62f1d213f89554d149445ea3502d0283 68 Pfam PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) 5 67 1.3E-29 T 13-10-2018 IPR018652 Protein of unknown function DUF2082, nucleic-acid-binding, Zn-ribbon BMD_2858 4d297bb2a9c478f74242d5720a99ed89 677 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 8 514 9.1E-104 T 13-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 BMD_2858 4d297bb2a9c478f74242d5720a99ed89 677 Pfam PF00999 Sodium/hydrogen exchanger family 6 412 1.0E-63 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BMD_0874 3ce61ca5df4d07d7c5aa206112cb3217 338 Gene3D G3DSA:1.10.3470.10 13 338 2.7E-102 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_0874 3ce61ca5df4d07d7c5aa206112cb3217 338 SUPERFAMILY SSF81345 11 334 5.23E-89 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_0874 3ce61ca5df4d07d7c5aa206112cb3217 338 Pfam PF01032 FecCD transport family 26 334 2.4E-96 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_3460 5156500b3c05e23d628e22d9123986a3 293 Pfam PF01261 Xylose isomerase-like TIM barrel 21 241 3.7E-35 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_3460 5156500b3c05e23d628e22d9123986a3 293 Gene3D G3DSA:3.20.20.150 8 287 8.3E-45 T 13-10-2018 BMD_3460 5156500b3c05e23d628e22d9123986a3 293 SUPERFAMILY SSF51658 13 279 1.3E-46 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_2269 691605d164205f8c7ef72dcb6132ff62 168 Pfam PF13798 Protein of unknown function with PCYCGC motif 11 166 4.8E-62 T 13-10-2018 IPR025673 Protein of unknown function with PCYCGC motif BMD_4173 43b73a63506bcafc758c40c437a60d65 142 Pfam PF03963 Flagellar hook capping protein - N-terminal region 14 74 8.0E-23 T 13-10-2018 IPR005648 Flagellar hook capping protein BMD_0456 220f2fc2b60b876889a7fb4cf7ac9edd 263 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 10 257 4.0E-79 T 13-10-2018 BMD_0456 220f2fc2b60b876889a7fb4cf7ac9edd 263 Pfam PF12787 EcsC protein family 10 254 5.1E-77 T 13-10-2018 IPR024787 EcsC protein BMD_2077 1883e47e0c66a41c93a2874d46f08cd4 50 Pfam PF13076 Fur-regulated basic protein A 12 46 8.0E-17 T 13-10-2018 IPR025072 Fur-regulated basic protein A BMD_2069 ef223f0b2415ac264c8d3264df89720c 190 Gene3D G3DSA:3.40.630.30 9 190 2.1E-48 T 13-10-2018 BMD_2069 ef223f0b2415ac264c8d3264df89720c 190 Pfam PF13302 Acetyltransferase (GNAT) domain 18 157 4.6E-30 T 13-10-2018 IPR000182 GNAT domain BMD_2069 ef223f0b2415ac264c8d3264df89720c 190 SUPERFAMILY SSF55729 11 183 6.29E-48 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1312 7ee7fbf348e4feeac6de0cf4ca76b2dd 81 ProDom PD059670 UPF0180 YKUS BA1413/GBAA1413/BAS1304 YKUS-LIKE BT9727_1277 BCE1513 GK1051 BH2667 ABC2430 BCE33L1278 1 47 5.0E-15 T 13-10-2018 IPR005370 Uncharacterised protein family UPF0180 BMD_1312 7ee7fbf348e4feeac6de0cf4ca76b2dd 81 Hamap MF_00506 UPF0180 protein . 1 79 28.132 T 13-10-2018 IPR005370 Uncharacterised protein family UPF0180 BMD_1312 7ee7fbf348e4feeac6de0cf4ca76b2dd 81 Pfam PF03698 Uncharacterised protein family (UPF0180) 3 78 2.4E-29 T 13-10-2018 IPR005370 Uncharacterised protein family UPF0180 BMD_0569 757212f257163fe619b201640dc084c1 447 SUPERFAMILY SSF56059 213 413 4.57E-19 T 13-10-2018 BMD_0569 757212f257163fe619b201640dc084c1 447 Gene3D G3DSA:3.30.470.20 308 437 2.8E-12 T 13-10-2018 BMD_0569 757212f257163fe619b201640dc084c1 447 Pfam PF14398 YheC/D like ATP-grasp 187 436 4.0E-73 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D BMD_4993 a6987616251f8234317113a8e8deb103 49 Pfam PF14115 YuzL-like protein 3 43 7.8E-18 T 13-10-2018 IPR025625 YuzL-like protein BMD_2672 627434dfd353799ddf4fc6b05686a38c 143 ProDom PD085159 YWQH COILED COIL 1 138 5.0E-23 T 13-10-2018 IPR020326 Uncharacterised protein family YwqH BMD_2672 627434dfd353799ddf4fc6b05686a38c 143 Pfam PF16888 Domain of unknown function (DUF5082) 12 102 3.1E-9 T 13-10-2018 IPR031681 Protein of unknown function DUF5082 BMD_1149 b2ef7184b5ddf446fb46861e90d982da 214 Gene3D G3DSA:2.60.120.10 9 182 1.7E-38 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_1149 b2ef7184b5ddf446fb46861e90d982da 214 Pfam PF00190 Cupin 41 165 3.1E-15 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 BMD_1149 b2ef7184b5ddf446fb46861e90d982da 214 SMART SM00835 28 166 1.7E-24 T 13-10-2018 IPR006045 Cupin 1 GO:0045735 BMD_1149 b2ef7184b5ddf446fb46861e90d982da 214 SUPERFAMILY SSF51182 34 181 2.06E-27 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_4374 226ecb0abbd603f9118968248fcff9da 153 TIGRFAM TIGR02838 spore_V_AC: stage V sporulation protein AC 10 148 1.1E-64 T 13-10-2018 IPR014203 Sporulation stage V, protein AC BMD_4374 226ecb0abbd603f9118968248fcff9da 153 Pfam PF03862 SpoVAC/SpoVAEB sporulation membrane protein 27 144 3.8E-41 T 13-10-2018 IPR005562 SpoVA BMD_1762 195d31f987e986745fca9d3ec15107a8 62 Gene3D G3DSA:3.30.750.24 1 59 6.6E-15 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2655 fbc45960f9d636ad1252702a65735f2d 197 Pfam PF09335 SNARE associated Golgi protein 29 154 1.9E-25 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_3234 4818cbc84be65f363042e553cc93e53c 241 Pfam PF03591 AzlC protein 26 166 6.3E-38 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease BMD_3274 24c847405fa35cb268be9bcba93c82f2 361 Pfam PF02687 FtsX-like permease family 268 352 5.4E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BMD_2483 4febd0d31c9525206fd2565ce5f19b6e 185 PIRSF PIRSF016661 1 176 2.1E-43 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 BMD_2483 4febd0d31c9525206fd2565ce5f19b6e 185 Pfam PF02632 BioY family 29 172 1.9E-34 T 13-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 BMD_2483 4febd0d31c9525206fd2565ce5f19b6e 185 Gene3D G3DSA:1.10.1760.20 1 177 4.7E-51 T 13-10-2018 BMD_3073 72dcca832a9071747f6c3ad5b55ed3d3 389 Gene3D G3DSA:1.20.1250.20 1 381 4.7E-25 T 13-10-2018 BMD_3073 72dcca832a9071747f6c3ad5b55ed3d3 389 SUPERFAMILY SSF103473 2 384 1.29E-31 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3073 72dcca832a9071747f6c3ad5b55ed3d3 389 Pfam PF07690 Major Facilitator Superfamily 18 344 9.6E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_3369 f104b52bd9015d134c40e1f186fb4562 129 Gene3D G3DSA:3.10.180.10 1 126 1.2E-23 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3369 f104b52bd9015d134c40e1f186fb4562 129 SUPERFAMILY SSF54593 1 126 1.48E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BMD_3369 f104b52bd9015d134c40e1f186fb4562 129 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 109 5.6E-15 T 13-10-2018 BMD_2133 a385c5d4329a8b9e582c919de9330beb 180 SUPERFAMILY SSF55729 6 173 2.52E-31 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2133 a385c5d4329a8b9e582c919de9330beb 180 Gene3D G3DSA:3.40.630.30 1 179 5.8E-35 T 13-10-2018 BMD_2133 a385c5d4329a8b9e582c919de9330beb 180 Pfam PF13302 Acetyltransferase (GNAT) domain 13 149 1.5E-18 T 13-10-2018 IPR000182 GNAT domain BMD_4355 76d99536004a4a095a629fbfd22a9780 392 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 49 392 4.9E-75 T 13-10-2018 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 BMD_4355 76d99536004a4a095a629fbfd22a9780 392 Pfam PF01578 Cytochrome C assembly protein 290 389 9.6E-23 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BMD_4355 76d99536004a4a095a629fbfd22a9780 392 Pfam PF01578 Cytochrome C assembly protein 73 195 1.5E-8 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BMD_3919 e270a14587ac9265756b0ce62962b41d 300 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 54 2.0E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3919 e270a14587ac9265756b0ce62962b41d 300 SUPERFAMILY SSF46689 3 66 3.34E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_3919 e270a14587ac9265756b0ce62962b41d 300 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 51 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BMD_3919 e270a14587ac9265756b0ce62962b41d 300 Gene3D G3DSA:1.10.357.10 1 194 1.5E-25 T 13-10-2018 BMD_3919 e270a14587ac9265756b0ce62962b41d 300 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 4.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_3919 e270a14587ac9265756b0ce62962b41d 300 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 4.2E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BMD_2174 c2f00d3eb690898bf17db78d19edeebb 525 Pfam PF03323 Bacillus/Clostridium GerA spore germination protein 46 514 4.0E-189 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_2174 c2f00d3eb690898bf17db78d19edeebb 525 PIRSF PIRSF005690 30 525 7.4E-190 T 13-10-2018 IPR004995 Bacillus/Clostridium Ger spore germination protein GO:0009847|GO:0016021 BMD_2830 dd7f48c5a5e976adede2c3404cda7ef8 275 SUPERFAMILY SSF161098 9 275 2.71E-70 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2830 dd7f48c5a5e976adede2c3404cda7ef8 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 270 2.1E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2830 dd7f48c5a5e976adede2c3404cda7ef8 275 Gene3D G3DSA:1.10.3720.10 2 263 6.8E-61 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2271 21bc587ef32b3ee2bbf4fa139ea2f018 65 Pfam PF11755 Protein of unknown function (DUF3311) 7 60 4.0E-20 T 13-10-2018 IPR021741 Protein of unknown function DUF3311 BMD_4922 7fcf9aa46fcf1de2ab9a3458c13aba6d 134 Gene3D G3DSA:3.30.310.100 4 134 7.1E-31 T 13-10-2018 IPR036491 YugN-like superfamily BMD_4922 7fcf9aa46fcf1de2ab9a3458c13aba6d 134 Pfam PF08868 YugN-like family 3 132 4.4E-54 T 13-10-2018 IPR014967 Uncharacterised protein family, YugN-like BMD_4922 7fcf9aa46fcf1de2ab9a3458c13aba6d 134 SUPERFAMILY SSF160755 1 132 8.76E-37 T 13-10-2018 IPR036491 YugN-like superfamily BMD_1996 7707b64e4f4e3a23bfaf05d5ed41bea0 219 SUPERFAMILY SSF56112 36 193 1.22E-11 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily BMD_1996 7707b64e4f4e3a23bfaf05d5ed41bea0 219 Gene3D G3DSA:1.10.510.10 23 177 1.6E-7 T 13-10-2018 BMD_4334 c6d094b92cc19b07afdcbcc557930fc6 139 Gene3D G3DSA:2.40.10.220 19 131 6.9E-9 T 13-10-2018 BMD_4334 c6d094b92cc19b07afdcbcc557930fc6 139 Pfam PF07238 PilZ domain 18 127 3.4E-13 T 13-10-2018 IPR009875 PilZ domain GO:0035438 BMD_4334 c6d094b92cc19b07afdcbcc557930fc6 139 SUPERFAMILY SSF141371 18 118 2.31E-6 T 13-10-2018 BMD_5086 ecd5f04027781afeec04bfef5ecae632 183 SUPERFAMILY SSF69754 3 108 5.1E-36 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like BMD_5086 ecd5f04027781afeec04bfef5ecae632 183 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 94 4.0E-32 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BMD_5086 ecd5f04027781afeec04bfef5ecae632 183 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 124 179 1.2E-28 T 13-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal BMD_5086 ecd5f04027781afeec04bfef5ecae632 183 Gene3D G3DSA:3.30.160.100 2 98 2.3E-34 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like BMD_5086 ecd5f04027781afeec04bfef5ecae632 183 Gene3D G3DSA:3.30.505.50 137 183 3.6E-27 T 13-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily BMD_5086 ecd5f04027781afeec04bfef5ecae632 183 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 183 25.536 T 13-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid BMD_5086 ecd5f04027781afeec04bfef5ecae632 183 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 101 1.3E-34 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BMD_2909 53a12974e03fc80708293e4688e95c86 79 Pfam PF05360 yiaA/B two helix domain 9 61 5.5E-19 T 13-10-2018 IPR008024 YiaAB two helix BMD_0454 fd026a94b51756ab851fff7273364617 343 Pfam PF01594 AI-2E family transporter 9 330 4.0E-51 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like BMD_0454 fd026a94b51756ab851fff7273364617 343 TIGRFAM TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI 8 337 9.5E-94 T 13-10-2018 IPR014227 Putative transport protein YtvI-like BMD_2004 ab7f4c4260a6a6af78c924fbcf12ddf0 468 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 5 458 1.7E-184 T 13-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 BMD_2004 ab7f4c4260a6a6af78c924fbcf12ddf0 468 Pfam PF03553 Na+/H+ antiporter family 183 451 1.3E-53 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 BMD_4175 114db55b1c66cfb13ee54b4b9e8aabb6 205 Pfam PF03448 MgtE intracellular N domain 145 199 6.4E-6 T 13-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain BMD_4175 114db55b1c66cfb13ee54b4b9e8aabb6 205 SUPERFAMILY SSF158791 143 199 2.22E-7 T 13-10-2018 BMD_4175 114db55b1c66cfb13ee54b4b9e8aabb6 205 Gene3D G3DSA:1.25.60.10 116 200 1.4E-5 T 13-10-2018 IPR038076 MgtE, N-terminal domain superfamily BMD_0735 d4374fe55a2cb46ca658e9100888b4a6 218 Pfam PF14153 Spore coat protein CotO 7 216 6.1E-19 T 13-10-2018 IPR025439 Spore coat protein CotO BMD_2849 d04ff08a3e396a9a02573c78b8eadd49 170 Gene3D G3DSA:3.40.50.300 1 170 1.3E-15 T 13-10-2018 BMD_2849 d04ff08a3e396a9a02573c78b8eadd49 170 SUPERFAMILY SSF52540 2 167 6.44E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_2740 b767ff933ce95e7235840e8947908d35 419 SUPERFAMILY SSF53850 19 417 1.76E-70 T 13-10-2018 BMD_2740 b767ff933ce95e7235840e8947908d35 419 Gene3D G3DSA:3.40.190.10 49 357 4.6E-125 T 13-10-2018 BMD_2740 b767ff933ce95e7235840e8947908d35 419 Gene3D G3DSA:3.40.190.10 142 398 4.6E-125 T 13-10-2018 BMD_2740 b767ff933ce95e7235840e8947908d35 419 Pfam PF01547 Bacterial extracellular solute-binding protein 47 337 1.2E-34 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_3250 44af1bb905376523f77504129f5a8dc1 122 SUPERFAMILY SSF54427 4 119 4.07E-19 T 13-10-2018 IPR032710 NTF2-like domain superfamily BMD_3250 44af1bb905376523f77504129f5a8dc1 122 Pfam PF14534 Domain of unknown function (DUF4440) 8 110 1.5E-11 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 BMD_3250 44af1bb905376523f77504129f5a8dc1 122 Gene3D G3DSA:3.10.450.50 2 120 9.3E-24 T 13-10-2018 BMD_0729 36c52ab9d270b71c9dbc029a2ab533a2 211 Gene3D G3DSA:1.10.287.860 148 211 2.0E-29 T 13-10-2018 BMD_0729 36c52ab9d270b71c9dbc029a2ab533a2 211 Gene3D G3DSA:3.30.460.10 2 147 5.1E-52 T 13-10-2018 BMD_0729 36c52ab9d270b71c9dbc029a2ab533a2 211 SMART SM00954 44 165 1.6E-41 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 BMD_0729 36c52ab9d270b71c9dbc029a2ab533a2 211 SUPERFAMILY SSF81301 5 198 3.11E-61 T 13-10-2018 BMD_0729 36c52ab9d270b71c9dbc029a2ab533a2 211 Pfam PF04607 Region found in RelA / SpoT proteins 44 163 1.6E-38 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 BMD_3350 e932796c6c7618e755e25d4baeadc00a 86 Gene3D G3DSA:1.20.58.1000 1 85 6.8E-23 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily BMD_3350 e932796c6c7618e755e25d4baeadc00a 86 Pfam PF02583 Metal-sensitive transcriptional repressor 4 83 1.8E-23 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 BMD_2745 383261699cd6852d2a2580ecbd690cc5 151 Gene3D G3DSA:3.40.630.30 2 150 4.9E-16 T 13-10-2018 BMD_2745 383261699cd6852d2a2580ecbd690cc5 151 Pfam PF00583 Acetyltransferase (GNAT) family 28 137 2.6E-9 T 13-10-2018 IPR000182 GNAT domain BMD_2745 383261699cd6852d2a2580ecbd690cc5 151 SUPERFAMILY SSF55729 5 142 6.25E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2762 72c4f2e5384dafd8173553f54a52020d 488 Pfam PF03239 Iron permease FTR1 family 209 338 2.9E-14 T 13-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 BMD_1808 ed84ad1ca5f4579d9969501999067a95 168 Pfam PF07987 Domain of unkown function (DUF1775) 1 102 1.0E-17 T 13-10-2018 IPR012533 YcnI-like BMD_1808 ed84ad1ca5f4579d9969501999067a95 168 Gene3D G3DSA:2.60.40.2230 1 136 6.7E-26 T 13-10-2018 IPR038507 YcnI-like superfamily BMD_4591 b3a3d25adef9f2103886a3ecb30375ce 309 Pfam PF01136 Peptidase family U32 75 306 4.1E-67 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BMD_4327 7e314bd372ad6ea060e2dc7ec557dcbe 45 Pfam PF14140 YpzI-like protein 1 41 1.4E-27 T 13-10-2018 IPR025414 YpzI-like protein BMD_2836 238822ed636ad3a3900ed495ea7de74c 61 Pfam PF13314 Domain of unknown function (DUF4083) 3 55 5.2E-10 T 13-10-2018 IPR025143 Protein of unknown function DUF4083 BMD_2781 045b05ba8930173535548147ec8bf770 94 Gene3D G3DSA:2.10.260.10 1 55 1.1E-11 T 13-10-2018 BMD_2781 045b05ba8930173535548147ec8bf770 94 SUPERFAMILY SSF89447 1 50 1.92E-6 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily BMD_4176 274945a3ba16464dbcae78b63627f994 147 Pfam PF02050 Flagellar FliJ protein 19 142 3.6E-19 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BMD_4176 274945a3ba16464dbcae78b63627f994 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 4 143 9.4E-23 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BMD_3970 791e4bdcd39b97d285f069cbd09dbf01 368 SUPERFAMILY SSF82689 248 351 2.62E-19 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BMD_3970 791e4bdcd39b97d285f069cbd09dbf01 368 SUPERFAMILY SSF82861 113 179 1.1E-9 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BMD_3970 791e4bdcd39b97d285f069cbd09dbf01 368 Gene3D G3DSA:3.30.70.100 247 344 1.9E-17 T 13-10-2018 BMD_3970 791e4bdcd39b97d285f069cbd09dbf01 368 Gene3D G3DSA:2.30.30.60 196 245 1.5E-13 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BMD_3970 791e4bdcd39b97d285f069cbd09dbf01 368 Pfam PF00924 Mechanosensitive ion channel 138 340 2.5E-62 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BMD_3970 791e4bdcd39b97d285f069cbd09dbf01 368 SUPERFAMILY SSF50182 180 245 3.17E-18 T 13-10-2018 IPR010920 LSM domain superfamily BMD_3848 9ac04d05062a0a864550fead1cf93f0a 64 SUPERFAMILY SSF103473 1 58 1.06E-5 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_0826 cb58a92d2157dbdd85b59270e0c758d5 397 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 395 1.5E-134 T 13-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 BMD_0826 cb58a92d2157dbdd85b59270e0c758d5 397 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 80 1.8E-17 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 BMD_0826 cb58a92d2157dbdd85b59270e0c758d5 397 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 395 1.7E-48 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 BMD_1129 0f0234ebb55082587ea239c6eaec5f9f 250 PIRSF PIRSF016557 1 250 1.1E-56 T 13-10-2018 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC GO:0004725|GO:0030145 BMD_1129 0f0234ebb55082587ea239c6eaec5f9f 250 Gene3D G3DSA:3.20.20.140 1 250 2.5E-57 T 13-10-2018 BMD_0217 09196f378cfad74fdc940162d440a532 200 Pfam PF01694 Rhomboid family 54 195 2.4E-35 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BMD_0217 09196f378cfad74fdc940162d440a532 200 SUPERFAMILY SSF144091 11 195 9.68E-42 T 13-10-2018 BMD_0217 09196f378cfad74fdc940162d440a532 200 Gene3D G3DSA:1.20.1540.10 9 199 2.0E-43 T 13-10-2018 IPR035952 Rhomboid-like superfamily BMD_2148 ca0f34064de00908bda0cdf89d109c8e 203 Pfam PF01810 LysE type translocator 15 197 1.2E-23 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BMD_5241 a7eb131fe534246ff85b4ff09029bb1f 264 Gene3D G3DSA:3.60.15.10 8 249 6.7E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_5241 a7eb131fe534246ff85b4ff09029bb1f 264 Pfam PF12706 Beta-lactamase superfamily domain 24 218 1.5E-22 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_5241 a7eb131fe534246ff85b4ff09029bb1f 264 SMART SM00849 13 218 3.6E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase BMD_5241 a7eb131fe534246ff85b4ff09029bb1f 264 SUPERFAMILY SSF56281 1 231 2.1E-42 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_2326 1bf945b32d50b8e7613e94e082bcd65a 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 256 7.0E-60 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BMD_2326 1bf945b32d50b8e7613e94e082bcd65a 257 Gene3D G3DSA:3.90.226.10 1 198 1.3E-62 T 13-10-2018 BMD_2326 1bf945b32d50b8e7613e94e082bcd65a 257 SUPERFAMILY SSF52096 2 256 1.05E-78 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BMD_2326 1bf945b32d50b8e7613e94e082bcd65a 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BMD_2326 1bf945b32d50b8e7613e94e082bcd65a 257 Gene3D G3DSA:1.10.12.10 200 257 3.1E-21 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BMD_3522 60d2f1cd1006b76a9324334124c5b793 137 Pfam PF17225 Domain of unknown function (DUF5300) 24 121 8.0E-16 T 13-10-2018 IPR033782 Domain of unknown function DUF5301 BMD_2039 8d09250f6fbce62c948e2abbbd50bb9b 462 PIRSF PIRSF026631 1 443 5.6E-86 T 13-10-2018 IPR014529 Uncharacterised conserved protein UCP026631 BMD_2039 8d09250f6fbce62c948e2abbbd50bb9b 462 Pfam PF03703 Bacterial PH domain 385 437 1.3E-4 T 13-10-2018 IPR005182 Domain of unknown function DUF304 BMD_2039 8d09250f6fbce62c948e2abbbd50bb9b 462 Pfam PF03703 Bacterial PH domain 239 311 9.2E-11 T 13-10-2018 IPR005182 Domain of unknown function DUF304 BMD_2039 8d09250f6fbce62c948e2abbbd50bb9b 462 Pfam PF03703 Bacterial PH domain 60 140 4.4E-18 T 13-10-2018 IPR005182 Domain of unknown function DUF304 BMD_2763 847e77ae865c9add5a772c402fc0ce62 169 Pfam PF07681 DoxX 16 113 4.9E-9 T 13-10-2018 IPR032808 DoxX family BMD_4661 18814c02241131106e179aa2d732a233 185 Pfam PF04238 Protein of unknown function (DUF420) 52 181 2.0E-42 T 13-10-2018 IPR007352 Protein of unknown function DUF420 BMD_1064 d9e67c272f6cdcdb390e63858b671956 59 Pfam PF14151 YfhD-like protein 1 49 2.4E-13 T 13-10-2018 IPR025435 YfhD-like protein BMD_3571 3fd96254d855d6fb367073b5c2f4662a 262 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 104 257 1.2E-9 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BMD_3571 3fd96254d855d6fb367073b5c2f4662a 262 Gene3D G3DSA:3.90.850.10 2 260 1.6E-75 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_3571 3fd96254d855d6fb367073b5c2f4662a 262 SUPERFAMILY SSF56529 9 259 5.89E-69 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BMD_3716 41ac9b94cf0fe48d316520d4dd2eaddf 69 Pfam PF00269 Small, acid-soluble spore proteins, alpha/beta type 10 64 3.3E-22 T 13-10-2018 IPR001448 Small acid-soluble spore protein, alpha/beta-type GO:0003690|GO:0006265 BMD_3716 41ac9b94cf0fe48d316520d4dd2eaddf 69 Gene3D G3DSA:1.10.8.910 10 68 5.9E-31 T 13-10-2018 IPR038300 SASP, alpha/beta-type superfamily BMD_3716 41ac9b94cf0fe48d316520d4dd2eaddf 69 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 25 34 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_3716 41ac9b94cf0fe48d316520d4dd2eaddf 69 ProSitePatterns PS00684 Small, acid-soluble spore proteins, alpha/beta type, signature 2. 43 57 - T 13-10-2018 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 BMD_0646 c9e683d5f132ee10a7ff62031650edb7 101 Pfam PF01844 HNH endonuclease 11 51 6.9E-5 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 BMD_3838 323cfd3266147945a3476e1ba236c23a 160 Pfam PF12867 DinB superfamily 19 145 9.5E-9 T 13-10-2018 IPR024775 DinB-like domain BMD_3838 323cfd3266147945a3476e1ba236c23a 160 Gene3D G3DSA:1.20.120.450 1 149 3.3E-30 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_3838 323cfd3266147945a3476e1ba236c23a 160 SUPERFAMILY SSF109854 15 148 1.1E-20 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_3650 579370e25d6d47789dcf1c61419800fe 366 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 8 358 7.2E-77 T 13-10-2018 IPR010640 Low temperature requirement A BMD_5064 4f9d14d282573eb4a71db9d9824a6faf 121 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 5 108 2.5E-28 T 13-10-2018 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV BMD_2576 4d119fb2a369442d532146f5efadad62 141 Pfam PF03780 Asp23 family, cell envelope-related function 19 119 2.0E-31 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 BMD_2451 4f369baae859a7c80873f2c1a39d5e52 114 Pfam PF10057 Uncharacterized conserved protein (DUF2294) 5 110 2.8E-33 T 13-10-2018 IPR018745 Domain of unknown function DUF2294 BMD_4917 e215865299c730d1efdea56667408fd8 359 Pfam PF01384 Phosphate transporter family 18 308 6.7E-50 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 BMD_4628 fdceda0aad4f54248c13c88353b38a3d 66 Pfam PF11146 Protein of unknown function (DUF2905) 6 62 7.9E-24 T 13-10-2018 IPR021320 Protein of unknown function DUF2905 BMD_2246 6a58706c7df7eeaf8ea8e69664be6d5a 65 Pfam PF14169 Cold-inducible protein YdjO 2 58 8.3E-27 T 13-10-2018 IPR025916 Cold-inducible protein YdjO BMD_4999 cc3118264f5167eef33d3ca1adb208a9 334 SUPERFAMILY SSF81345 5 329 3.27E-81 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_4999 cc3118264f5167eef33d3ca1adb208a9 334 Gene3D G3DSA:1.10.3470.10 6 333 1.2E-92 T 13-10-2018 IPR037294 ABC transporter, BtuC-like BMD_4999 cc3118264f5167eef33d3ca1adb208a9 334 Pfam PF01032 FecCD transport family 19 329 3.7E-93 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BMD_3548 c41f8506d3fd145ccc3b49b5b9675ef0 117 Pfam PF13789 Domain of unknown function (DUF4181) 13 112 2.0E-14 T 13-10-2018 IPR025441 Protein of unknown function DUF4181 BMD_4830 01afc12505435876b20560bfad612b8f 547 PIRSF PIRSF038958 1 538 2.1E-133 T 13-10-2018 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type BMD_4830 01afc12505435876b20560bfad612b8f 547 Pfam PF01943 Polysaccharide biosynthesis protein 6 320 2.1E-52 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BMD_4830 01afc12505435876b20560bfad612b8f 547 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 374 519 3.8E-27 T 13-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain BMD_5113 e81f4fc81d1be8e2abd864c55589efa4 177 Gene3D G3DSA:2.40.50.140 89 171 1.3E-28 T 13-10-2018 BMD_1916 cde73c9c3ee834a2e5ee3f26ce1b725e 402 Pfam PF07690 Major Facilitator Superfamily 15 252 4.4E-36 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BMD_1916 cde73c9c3ee834a2e5ee3f26ce1b725e 402 Gene3D G3DSA:1.20.1250.20 5 385 2.1E-58 T 13-10-2018 BMD_1916 cde73c9c3ee834a2e5ee3f26ce1b725e 402 SUPERFAMILY SSF103473 1 390 2.22E-64 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_1084 c0b65c69b334d2dc4bb8d532e1a568ab 231 Pfam PF11553 Protein of unknown function (DUF3231) 1 60 3.2E-11 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_1084 c0b65c69b334d2dc4bb8d532e1a568ab 231 Pfam PF11553 Protein of unknown function (DUF3231) 71 230 4.5E-38 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_1084 c0b65c69b334d2dc4bb8d532e1a568ab 231 Gene3D G3DSA:1.20.1260.10 73 218 8.6E-6 T 13-10-2018 IPR012347 Ferritin-like BMD_2312 313302d7263450de3737f79d52685ff7 104 Pfam PF10925 Protein of unknown function (DUF2680) 35 91 2.5E-19 T 13-10-2018 IPR024485 Protein of unknown function DUF2680 BMD_2312 313302d7263450de3737f79d52685ff7 104 ProDom PD673109 PRECURSOR SIGNAL YCKD ORF4 DOMAIN 1 100 3.0E-16 T 13-10-2018 IPR024485 Protein of unknown function DUF2680 BMD_1214 349f8c08e68b47cb609d4936a761fcc1 199 TIGRFAM TIGR02132 phaR_Bmeg: polyhydroxyalkanoic acid synthase, PhaR subunit 1 189 3.2E-113 T 13-10-2018 IPR011729 Polyhydroxyalkanoic acid synthase, PhaR subunit BMD_0673 40e6fb7464b1d686b214b589d5f00e63 208 Pfam PF12758 Protein of unknown function (DUF3813) 1 66 7.7E-7 T 13-10-2018 IPR024217 Protein of unknown function DUF3813 BMD_1828 e5cc62bb055fa99c0e12dba75e17d221 125 SUPERFAMILY SSF160631 54 124 9.94E-6 T 13-10-2018 BMD_2301 424473ccf93cc1d4ed2a67c4b4860516 109 Pfam PF03551 Transcriptional regulator PadR-like family 19 92 8.0E-19 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal BMD_2301 424473ccf93cc1d4ed2a67c4b4860516 109 Gene3D G3DSA:1.10.10.10 3 109 1.4E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_2301 424473ccf93cc1d4ed2a67c4b4860516 109 SUPERFAMILY SSF46785 9 106 1.17E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_2693 a5552527e7966c1078548a51c84c5ca6 264 Gene3D G3DSA:3.40.50.1110 59 263 9.9E-40 T 13-10-2018 IPR036514 SGNH hydrolase superfamily BMD_2693 a5552527e7966c1078548a51c84c5ca6 264 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 65 253 5.1E-27 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain BMD_2693 a5552527e7966c1078548a51c84c5ca6 264 SUPERFAMILY SSF52266 59 262 5.78E-38 T 13-10-2018 BMD_0200 a9aa4c35cd510c95c64e5479caacaa90 177 Pfam PF03734 L,D-transpeptidase catalytic domain 37 158 2.2E-24 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BMD_0200 a9aa4c35cd510c95c64e5479caacaa90 177 Gene3D G3DSA:2.40.440.10 15 172 9.1E-42 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_0200 a9aa4c35cd510c95c64e5479caacaa90 177 SUPERFAMILY SSF141523 34 159 4.19E-32 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.7E-21 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.7E-21 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.7E-21 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 SMART SM00411 1 90 1.9E-45 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 Gene3D G3DSA:4.10.520.10 1 90 1.4E-39 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 SUPERFAMILY SSF47729 1 90 6.18E-35 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BMD_2784 d86cfec4c125e1bc5a32e8bc54802416 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 7.4E-38 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BMD_0502 ab6c335ec5aa23580c98b7de4fa57a38 162 PIRSF PIRSF031501 1 161 9.7E-58 T 13-10-2018 IPR010387 Queuosine precursor transporter QueT GO:0005886 BMD_0502 ab6c335ec5aa23580c98b7de4fa57a38 162 Pfam PF06177 QueT transporter 7 153 2.0E-32 T 13-10-2018 IPR010387 Queuosine precursor transporter QueT GO:0005886 BMD_2314 b2a2d8dd4292a9fcf59110093b59b122 87 Pfam PF06949 Protein of unknown function (DUF1292) 15 84 4.1E-11 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 BMD_0467 41a27f5df6f9ff231951e5418360a9ff 107 Pfam PF12986 Domain of unknown function (DUF3870) 8 99 6.8E-31 T 13-10-2018 IPR024617 Domain of unknown function DUF3870 BMD_1580 58590677eb5541eef8a1387ec918278e 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 218 4.8E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_1580 58590677eb5541eef8a1387ec918278e 221 SUPERFAMILY SSF161098 10 204 4.71E-44 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1580 58590677eb5541eef8a1387ec918278e 221 Gene3D G3DSA:1.10.3720.10 7 220 1.3E-50 T 13-10-2018 IPR035906 MetI-like superfamily BMD_4450 3e101a5dd492301defd660306bc9f075 220 TIGRFAM TIGR02830 spore_III_AG: stage III sporulation protein AG 30 219 4.7E-64 T 13-10-2018 IPR014195 Sporulation stage III, protein AG BMD_1116 38d41acae1556132b3852f2d60347eb2 374 Pfam PF14897 EpsG family 40 371 5.8E-33 T 13-10-2018 BMD_1048 6dd2889f7826f679e403d2a28d301c15 122 Gene3D G3DSA:3.10.450.40 3 69 1.2E-10 T 13-10-2018 BMD_1048 6dd2889f7826f679e403d2a28d301c15 122 Pfam PF03413 Peptidase propeptide and YPEB domain 11 66 4.4E-5 T 13-10-2018 IPR025711 PepSY domain BMD_1761 f2a82f12a62bdf6e51bc99911e8b3faa 298 Pfam PF09557 Domain of unknown function (DUF2382) 174 283 8.1E-28 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_1761 f2a82f12a62bdf6e51bc99911e8b3faa 298 TIGRFAM TIGR02271 TIGR02271: conserved domain 174 288 2.0E-34 T 13-10-2018 IPR019060 Domain of unknown function DUF2382 BMD_1761 f2a82f12a62bdf6e51bc99911e8b3faa 298 Pfam PF11181 Heat induced stress protein YflT 6 122 2.8E-15 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_2066 be458f50670af90987f65695f522a9c8 230 Pfam PF04172 LrgB-like family 14 225 3.7E-69 T 13-10-2018 IPR007300 CidB/LrgB family BMD_0212 fcc2b4297dfccdaed13ebbfa58e3102b 345 PIRSF PIRSF006268 46 344 4.3E-51 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 BMD_0212 fcc2b4297dfccdaed13ebbfa58e3102b 345 Gene3D G3DSA:3.10.520.20 50 344 2.5E-63 T 13-10-2018 BMD_0212 fcc2b4297dfccdaed13ebbfa58e3102b 345 Pfam PF02424 ApbE family 72 315 1.3E-53 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 BMD_0212 fcc2b4297dfccdaed13ebbfa58e3102b 345 SUPERFAMILY SSF143631 65 337 1.29E-60 T 13-10-2018 IPR003374 ApbE-like superfamily BMD_1794 2946974132f7fe30a17a0d2d95d363cd 108 Pfam PF11181 Heat induced stress protein YflT 6 103 3.0E-16 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_2997 05328314892c0de5cc3c5328fcba77db 197 Pfam PF09335 SNARE associated Golgi protein 32 157 9.6E-19 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_0044 178fc46535aac0e0a17e993cdcabb52b 60 Pfam PF10764 Inhibitor of sigma-G Gin 8 52 1.3E-12 T 13-10-2018 IPR019700 Anti-sigma-G factor Gin BMD_0318 1505fc32e8c2ef29460316abd720dda4 191 Pfam PF03413 Peptidase propeptide and YPEB domain 127 181 1.1E-9 T 13-10-2018 IPR025711 PepSY domain BMD_0318 1505fc32e8c2ef29460316abd720dda4 191 Pfam PF03413 Peptidase propeptide and YPEB domain 32 87 5.0E-4 T 13-10-2018 IPR025711 PepSY domain BMD_0318 1505fc32e8c2ef29460316abd720dda4 191 Gene3D G3DSA:3.10.450.40 25 92 8.9E-6 T 13-10-2018 BMD_0318 1505fc32e8c2ef29460316abd720dda4 191 Gene3D G3DSA:3.10.450.40 122 190 1.3E-14 T 13-10-2018 BMD_3194 6b44f385dcb6bc4dbac8f24b605c3c5b 70 Pfam PF11148 Protein of unknown function (DUF2922) 2 68 4.4E-24 T 13-10-2018 IPR021321 Protein of unknown function DUF2922 BMD_2559 1dad04d21db9428a89e908cd6e2cfe04 196 Gene3D G3DSA:3.90.550.10 1 189 1.7E-30 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_2559 1dad04d21db9428a89e908cd6e2cfe04 196 Pfam PF12804 MobA-like NTP transferase domain 1 157 2.5E-20 T 13-10-2018 IPR025877 MobA-like NTP transferase BMD_2559 1dad04d21db9428a89e908cd6e2cfe04 196 SUPERFAMILY SSF53448 1 190 1.66E-12 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BMD_4042 c0abd46d9d8d51772d8e7e40f1a372a1 83 Pfam PF10751 Protein of unknown function (DUF2535) 1 83 5.2E-40 T 13-10-2018 IPR019687 Protein of unknown function DUF2535 BMD_2424 3d5ded1ee0ab829fe4d5074d725a35aa 271 ProDom PD119415 TRANSGLUTAMINASE TRANSFERASE ACYLTRANSFERASE GAMMA-GLUTAMYLTRANSFERASE PROTEIN-GLUTAMINE TGASE SPORULATION TGL 11 237 5.0E-62 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 BMD_2424 3d5ded1ee0ab829fe4d5074d725a35aa 271 Hamap MF_00727 Protein-glutamine gamma-glutamyltransferase [tgl]. 1 246 43.032 T 13-10-2018 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria GO:0003810 BMD_5225 2f34a7280f46637d06b383db1f7c837f 602 Pfam PF02554 Carbon starvation protein CstA 1 368 2.4E-146 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 BMD_5225 2f34a7280f46637d06b383db1f7c837f 602 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 417 537 4.8E-28 T 13-10-2018 IPR025299 CstA, C-terminal domain BMD_4345 093be9973b1fe7f57b04ad3d9284b855 150 ProDom PD089241 YPBF MEMBRANE BH1610 TRANSMEMBRANE 77 147 3.0E-13 T 13-10-2018 IPR020210 Uncharacterised protein family, YpbF, transmembrane BMD_4345 093be9973b1fe7f57b04ad3d9284b855 150 Pfam PF10864 Protein of unknown function (DUF2663) 17 148 2.2E-35 T 13-10-2018 IPR020210 Uncharacterised protein family, YpbF, transmembrane BMD_0568 df9197046f389b4eda3493ddecc7c6c0 374 Pfam PF14398 YheC/D like ATP-grasp 114 365 2.7E-66 T 13-10-2018 IPR026838 Endospore coat-associated protein YheC/D BMD_0568 df9197046f389b4eda3493ddecc7c6c0 374 Gene3D G3DSA:3.30.470.20 234 364 9.5E-6 T 13-10-2018 BMD_0568 df9197046f389b4eda3493ddecc7c6c0 374 SUPERFAMILY SSF56059 137 345 5.52E-15 T 13-10-2018 BMD_0581 11051808653754bdc8620ed79afe662a 60 Pfam PF14147 Sporulation protein YhaL 4 55 3.2E-27 T 13-10-2018 IPR025428 Sporulation protein YhaL BMD_2180 9893e1d6c5540a8a5a65d4d8bfb5446d 436 Pfam PF03553 Na+/H+ antiporter family 71 211 3.6E-12 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 BMD_2180 9893e1d6c5540a8a5a65d4d8bfb5446d 436 Pfam PF03553 Na+/H+ antiporter family 234 421 1.0E-12 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 BMD_5180 08516262539f325c5c4293b3fec6bf85 170 Pfam PF08741 YwhD family 6 167 8.5E-83 T 13-10-2018 IPR014852 Uncharacterised protein YwhD BMD_3866 563c1f4a9e3f8007cf20cbf747f4bd37 87 Gene3D G3DSA:1.20.58.1000 1 86 7.2E-25 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily BMD_3866 563c1f4a9e3f8007cf20cbf747f4bd37 87 Pfam PF02583 Metal-sensitive transcriptional repressor 5 83 6.7E-26 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 BMD_0755 f8897248ddbd3981b6532a432e78cb38 508 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 35 445 3.1E-100 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 BMD_0755 f8897248ddbd3981b6532a432e78cb38 508 Gene3D G3DSA:1.10.4160.10 17 486 8.7E-119 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily BMD_0449 d032faf5e4d25939cd4762d9807ca480 162 Pfam PF04892 VanZ like family 28 148 8.4E-23 T 13-10-2018 IPR006976 VanZ-like BMD_3011 668f74c229d95edd14a45887a7e94e6d 89 Pfam PF14206 Cysteine-rich CPCC 4 75 5.9E-30 T 13-10-2018 IPR025983 Cysteine-rich CPCC domain BMD_3542 c85fef2697146635c4ae192253b7c54c 127 Pfam PF13115 YtkA-like 26 106 2.2E-13 T 13-10-2018 IPR032693 YtkA-like domain BMD_1910 6f8a26a18eb3774152656f2ec051b2d0 247 Pfam PF04239 Protein of unknown function (DUF421) 110 224 1.2E-33 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_1910 6f8a26a18eb3774152656f2ec051b2d0 247 Gene3D G3DSA:3.30.240.20 102 176 8.6E-24 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_1910 6f8a26a18eb3774152656f2ec051b2d0 247 Gene3D G3DSA:3.30.240.20 189 247 1.6E-13 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_0027 3e05cec2d1f7f33db0934ba9215eb92a 74 Pfam PF10704 Protein of unknown function (DUF2508) 1 69 9.6E-26 T 13-10-2018 IPR019644 Protein of unknown function DUF2508 BMD_2629 d4ec85dcb4e523a5df4446959b45ff23 318 Pfam PF03547 Membrane transport protein 164 313 1.6E-17 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BMD_2629 d4ec85dcb4e523a5df4446959b45ff23 318 Pfam PF03547 Membrane transport protein 9 157 2.9E-23 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BMD_0925 713d8c03be133c7768b41911ae021829 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 46 313 8.0E-54 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BMD_4836 64c188a8ecae0f262216927fd0ee9aec 440 Pfam PF02447 GntP family permease 6 433 4.3E-10 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BMD_2995 f27b898f09a687b1cbcb32e899586e20 249 SUPERFAMILY SSF55469 1 248 7.98E-74 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_2995 f27b898f09a687b1cbcb32e899586e20 249 PIRSF PIRSF005426 1 249 2.2E-95 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 BMD_2995 f27b898f09a687b1cbcb32e899586e20 249 Pfam PF00881 Nitroreductase family 8 165 4.7E-24 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BMD_2995 f27b898f09a687b1cbcb32e899586e20 249 Gene3D G3DSA:3.40.109.10 1 249 1.7E-85 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BMD_1950 7a61fd0603cad290fea222af233d54d9 202 Pfam PF01955 Adenosylcobinamide amidohydrolase 5 191 1.4E-45 T 13-10-2018 IPR002808 Adenosylcobinamide amidohydrolase, CbiZ BMD_4541 500ff543164783e42a724acdf7361c77 94 TIGRFAM TIGR02856 spore_yqfC: sporulation protein YqfC 9 92 9.9E-35 T 13-10-2018 IPR022477 Sporulation protein YqfC BMD_4541 500ff543164783e42a724acdf7361c77 94 Pfam PF07873 YabP family 28 91 6.1E-19 T 13-10-2018 IPR022476 Sporulation protein YabP/YqfC BMD_2603 9af4c76994556630134ddd74a1ed089d 215 SUPERFAMILY SSF63965 10 211 4.58E-71 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 BMD_2603 9af4c76994556630134ddd74a1ed089d 215 Pfam PF02570 Precorrin-8X methylmutase 16 208 1.5E-76 T 13-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 BMD_2603 9af4c76994556630134ddd74a1ed089d 215 Gene3D G3DSA:3.40.50.10230 5 215 2.4E-82 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 BMD_5027 6fe74bda67a067177484cf182780d02d 159 Pfam PF07849 Protein of unknown function (DUF1641) 121 155 2.2E-14 T 13-10-2018 IPR012440 Protein of unknown function DUF1641 BMD_1410 178a7cf63caa7cf1886d427e96bc3a2f 416 SUPERFAMILY SSF53098 92 281 6.08E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily BMD_1410 178a7cf63caa7cf1886d427e96bc3a2f 416 Gene3D G3DSA:1.25.40.10 276 402 1.2E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BMD_1410 178a7cf63caa7cf1886d427e96bc3a2f 416 Gene3D G3DSA:3.30.420.10 113 269 1.8E-6 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BMD_1410 178a7cf63caa7cf1886d427e96bc3a2f 416 Pfam PF13482 RNase_H superfamily 105 273 3.9E-41 T 13-10-2018 IPR038720 YprB, ribonuclease H-like domain BMD_1581 c3e2d835bd9a6a9e82098be96ff0943f 466 PIRSF PIRSF006060 1 461 1.7E-58 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1581 c3e2d835bd9a6a9e82098be96ff0943f 466 Pfam PF13520 Amino acid permease 36 435 3.4E-33 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1581 c3e2d835bd9a6a9e82098be96ff0943f 466 Gene3D G3DSA:1.20.1740.10 10 459 8.1E-47 T 13-10-2018 BMD_4865 f34ea42572cd00429b190bdbfbadaac4 345 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 6 332 2.5E-38 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BMD_1925 36eefd025eefce2d6076d655e2b5bd50 42 Pfam PF14115 YuzL-like protein 3 41 2.6E-16 T 13-10-2018 IPR025625 YuzL-like protein BMD_0827 3f478146c8e28827e34405f5a772c047 478 PIRSF PIRSF006060 1 475 2.4E-87 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_0827 3f478146c8e28827e34405f5a772c047 478 ProSitePatterns PS00218 Amino acid permeases signature. 44 75 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_0827 3f478146c8e28827e34405f5a772c047 478 Pfam PF00324 Amino acid permease 19 460 6.8E-124 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_0827 3f478146c8e28827e34405f5a772c047 478 Gene3D G3DSA:1.20.1740.10 9 473 9.3E-71 T 13-10-2018 BMD_2524 113b4ecd134f6c116a70738bb1fba420 83 Pfam PF09515 Thiamine transporter protein (Thia_YuaJ) 11 63 3.3E-12 T 13-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 BMD_2524 113b4ecd134f6c116a70738bb1fba420 83 Gene3D G3DSA:1.10.1760.20 7 79 3.5E-10 T 13-10-2018 BMD_2844 bf1793cc5c69bceffc68585f266b400f 303 SUPERFAMILY SSF103481 197 291 6.8E-13 T 13-10-2018 BMD_2844 bf1793cc5c69bceffc68585f266b400f 303 Pfam PF00892 EamA-like transporter family 7 138 3.6E-27 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2844 bf1793cc5c69bceffc68585f266b400f 303 Pfam PF00892 EamA-like transporter family 153 287 5.4E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_2844 bf1793cc5c69bceffc68585f266b400f 303 SUPERFAMILY SSF103481 41 142 1.96E-14 T 13-10-2018 BMD_1504 7343bb383717ead3c1102886ab3dcd09 65 Gene3D G3DSA:1.10.260.40 2 64 2.4E-7 T 13-10-2018 BMD_1504 7343bb383717ead3c1102886ab3dcd09 65 SUPERFAMILY SSF47413 4 61 9.15E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BMD_3362 67ab9fd34f0585f21afe5baad05f157e 87 SMART SM00894 31 86 5.1E-7 T 13-10-2018 IPR008613 Excalibur calcium-binding domain BMD_3362 67ab9fd34f0585f21afe5baad05f157e 87 Pfam PF05901 Excalibur calcium-binding domain 32 86 5.5E-14 T 13-10-2018 IPR008613 Excalibur calcium-binding domain BMD_3370 cd6223f37d68f18554d5274fbe21d566 272 Pfam PF02811 PHP domain 8 201 1.9E-12 T 13-10-2018 IPR004013 PHP domain GO:0003824 BMD_3370 cd6223f37d68f18554d5274fbe21d566 272 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 7 248 1.5E-48 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 BMD_3370 cd6223f37d68f18554d5274fbe21d566 272 SUPERFAMILY SSF89550 6 267 4.84E-51 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BMD_3370 cd6223f37d68f18554d5274fbe21d566 272 Gene3D G3DSA:3.20.20.140 7 272 2.8E-72 T 13-10-2018 BMD_2981 a6a52cc38bacafedb820e1959c00a90f 255 Pfam PF04240 Carotenoid biosynthesis protein 34 240 1.6E-40 T 13-10-2018 IPR007354 Carotene biosynthesis associated membrane protein BMD_3144 821389ee4b0a83743cf6ddd6ffd7a8ae 97 Pfam PF12823 Domain of unknown function (DUF3817) 8 94 9.1E-25 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane BMD_3144 821389ee4b0a83743cf6ddd6ffd7a8ae 97 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 10 93 9.1E-31 T 13-10-2018 IPR023845 Domain of unknown function DUF3817, transmembrane BMD_1349 f8880638f30064535fbe469c43f7d1a6 396 Pfam PF01098 Cell cycle protein 13 370 1.0E-107 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_1349 f8880638f30064535fbe469c43f7d1a6 396 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 329 353 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_0259 45ed65287b898b6423800bc0ca6216bc 242 Pfam PF02517 CAAX protease self-immunity 125 210 1.0E-16 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BMD_4726 e1366351dac7cc3f6cf6ae421549bb41 86 Pfam PF05164 Cell division protein ZapA 10 80 6.7E-16 T 13-10-2018 IPR007838 Cell division protein ZapA-like BMD_4726 e1366351dac7cc3f6cf6ae421549bb41 86 SUPERFAMILY SSF102829 10 81 4.18E-19 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily BMD_0875 e005214343dca0d8cf5dc70d9325e809 97 Pfam PF11553 Protein of unknown function (DUF3231) 3 93 2.2E-24 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_3431 3063f81605dab5d9671c4d0ecefd80cb 93 Pfam PF13828 Domain of unknown function (DUF4190) 13 72 5.3E-13 T 13-10-2018 IPR025241 Domain of unknown function DUF4190 BMD_1779 144fcf235813725b2190d0f882683fa8 96 Pfam PF07875 Coat F domain 13 73 9.2E-22 T 13-10-2018 IPR012851 Spore coat protein CotF-like BMD_1469 a03233539969859ad157aaccecd6c733 183 Pfam PF09335 SNARE associated Golgi protein 33 150 8.3E-21 T 13-10-2018 IPR032816 SNARE associated Golgi protein BMD_2919 f1b69b66ea9c6bd8a189fc2e80a3de86 245 SUPERFAMILY SSF82171 34 200 5.89E-7 T 13-10-2018 BMD_3228 1c1d325c4a749f403c8e0bbf89534daa 137 Pfam PF07485 Domain of Unknown Function (DUF1259) 10 122 1.8E-24 T 13-10-2018 IPR011094 Uncharacterised protein family, LppY/LpqO BMD_1399 5d97bf05f169d1c172621d3fe1f2bfa4 219 Gene3D G3DSA:3.30.70.2970 35 141 1.2E-46 T 13-10-2018 BMD_1399 5d97bf05f169d1c172621d3fe1f2bfa4 219 Pfam PF04402 Protein of unknown function (DUF541) 23 217 1.5E-37 T 13-10-2018 IPR007497 Protein of unknown function DUF541 BMD_1399 5d97bf05f169d1c172621d3fe1f2bfa4 219 Gene3D G3DSA:3.30.110.170 25 217 1.2E-46 T 13-10-2018 BMD_4388 00a90ac13f898f243eb4867f0ad0e8ec 54 Pfam PF13072 Protein of unknown function (DUF3936) 1 36 6.1E-22 T 13-10-2018 IPR025177 Cell division inhibitor MciZ BMD_2683 64f7c1e50b1fb70c301972a36035df9d 363 Pfam PF05816 Toxic anion resistance protein (TelA) 35 358 3.2E-103 T 13-10-2018 IPR008863 Toxic anion resistance BMD_2683 64f7c1e50b1fb70c301972a36035df9d 363 PIRSF PIRSF026508 1 361 2.9E-112 T 13-10-2018 IPR008863 Toxic anion resistance BMD_1768 9848430812e8d31bdc28fb75b2f11358 477 ProSitePatterns PS00218 Amino acid permeases signature. 45 76 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BMD_1768 9848430812e8d31bdc28fb75b2f11358 477 Pfam PF00324 Amino acid permease 20 465 9.5E-130 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BMD_1768 9848430812e8d31bdc28fb75b2f11358 477 PIRSF PIRSF006060 1 474 8.2E-82 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BMD_1768 9848430812e8d31bdc28fb75b2f11358 477 Gene3D G3DSA:1.20.1740.10 11 475 2.6E-68 T 13-10-2018 BMD_4252 c8da2e7558df730ef57ddc03f349b38f 89 Pfam PF02325 YGGT family 11 77 1.8E-23 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 BMD_0930 c0d327cb2deb429868114dc61d1c3fd5 425 Gene3D G3DSA:3.40.190.10 149 407 4.0E-90 T 13-10-2018 BMD_0930 c0d327cb2deb429868114dc61d1c3fd5 425 Gene3D G3DSA:3.40.190.10 54 353 4.0E-90 T 13-10-2018 BMD_0930 c0d327cb2deb429868114dc61d1c3fd5 425 SUPERFAMILY SSF53850 33 423 3.57E-71 T 13-10-2018 BMD_0930 c0d327cb2deb429868114dc61d1c3fd5 425 Pfam PF13416 Bacterial extracellular solute-binding protein 51 359 5.3E-42 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein BMD_1454 e22719229d83ff54e49e08c03848b1c8 431 Pfam PF00860 Permease family 4 386 4.8E-54 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BMD_3167 82d30b7dc53de74417360550657b3528 105 Pfam PF11588 Protein of unknown function (DUF3243) 28 105 1.3E-31 T 13-10-2018 IPR021637 Protein of unknown function DUF3243 BMD_3167 82d30b7dc53de74417360550657b3528 105 Gene3D G3DSA:1.10.760.20 23 105 3.7E-34 T 13-10-2018 IPR038292 YmfJ/YflH superfamily BMD_3074 b841959b0b4f3d1c5aa3793b8849fe84 187 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 3 178 4.7E-33 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_3215 d1d96a7cc5ecd91d7b0e8d60b3358261 280 SUPERFAMILY SSF47240 1 275 8.6E-95 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_3215 d1d96a7cc5ecd91d7b0e8d60b3358261 280 Gene3D G3DSA:1.20.1260.130 2 279 7.7E-85 T 13-10-2018 BMD_3215 d1d96a7cc5ecd91d7b0e8d60b3358261 280 Pfam PF05067 Manganese containing catalase 1 263 5.6E-100 T 13-10-2018 IPR007760 Manganese catalase BMD_1518 43aaae7c1a7c80c72d64434c1a5b6d79 121 SUPERFAMILY SSF46785 8 113 1.56E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BMD_1518 43aaae7c1a7c80c72d64434c1a5b6d79 121 Pfam PF01638 HxlR-like helix-turn-helix 19 108 7.2E-40 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type BMD_1518 43aaae7c1a7c80c72d64434c1a5b6d79 121 Gene3D G3DSA:1.10.10.10 4 116 1.4E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BMD_3634 8b745a4a3ee835f7f90a3efde0ca5254 73 Gene3D G3DSA:3.30.750.24 1 57 2.6E-14 T 13-10-2018 IPR036513 STAS domain superfamily BMD_1439 16aaee7d01393615980dfa1a92d4cd1e 185 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 76 164 2.7E-25 T 13-10-2018 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 BMD_1439 16aaee7d01393615980dfa1a92d4cd1e 185 Gene3D G3DSA:1.20.120.1630 1 182 7.2E-20 T 13-10-2018 BMD_4949 7850a7c1e9ef675ddde41a7a39a1b6b3 215 Pfam PF06725 3D domain 125 186 1.6E-18 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 BMD_4949 7850a7c1e9ef675ddde41a7a39a1b6b3 215 SUPERFAMILY SSF50685 125 166 1.19E-6 T 13-10-2018 IPR036908 RlpA-like domain superfamily BMD_5102 be504b23f35c73a26394f0db003fc021 137 TIGRFAM TIGR03826 YvyF: flagellar operon protein TIGR03826 4 136 6.0E-44 T 13-10-2018 IPR022258 Flagellar operon protein YvyF BMD_2916 17177774027ad41c9c516423a05595b9 223 Gene3D G3DSA:3.30.240.20 166 223 4.1E-17 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_2916 17177774027ad41c9c516423a05595b9 223 Pfam PF04239 Protein of unknown function (DUF421) 87 202 1.1E-31 T 13-10-2018 IPR007353 Protein of unknown function DUF421 BMD_2916 17177774027ad41c9c516423a05595b9 223 Gene3D G3DSA:3.30.240.20 78 153 6.8E-22 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BMD_0328 70b26d31500657f206203447baf87803 265 Pfam PF03824 High-affinity nickel-transport protein 5 192 7.5E-7 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 BMD_1344 4278cce6fbd4fb3ec78534008a28bb52 151 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 13 93 1.7E-7 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BMD_1344 4278cce6fbd4fb3ec78534008a28bb52 151 SUPERFAMILY SSF50475 10 146 6.18E-10 T 13-10-2018 BMD_1344 4278cce6fbd4fb3ec78534008a28bb52 151 Gene3D G3DSA:2.30.110.10 1 150 1.0E-60 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BMD_1695 18c3b3fda8d8ff764690cdc18ce85a6e 116 Pfam PF00892 EamA-like transporter family 9 114 9.5E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BMD_1695 18c3b3fda8d8ff764690cdc18ce85a6e 116 Gene3D G3DSA:1.10.3730.20 22 116 6.0E-6 T 13-10-2018 BMD_1695 18c3b3fda8d8ff764690cdc18ce85a6e 116 SUPERFAMILY SSF103481 38 114 1.14E-14 T 13-10-2018 BMD_1667 ecaec215a092046f592c2aa3e216570e 65 Gene3D G3DSA:1.20.1260.10 2 65 6.2E-7 T 13-10-2018 IPR012347 Ferritin-like BMD_4473 50756b707da57940d3dcc45a07aa97bc 274 ProDom PD123329 YQHG BH2818 1 259 3.0E-87 T 13-10-2018 IPR024562 Uncharacterised protein family YqhG BMD_4473 50756b707da57940d3dcc45a07aa97bc 274 Pfam PF11079 Bacterial protein YqhG of unknown function 1 259 3.7E-116 T 13-10-2018 IPR024562 Uncharacterised protein family YqhG BMD_1047 2bd56660c6312c538a0404ec49362d83 60 Pfam PF13119 Domain of unknown function (DUF3973) 1 39 1.3E-28 T 13-10-2018 IPR025003 Domain of unknown function DUF3973 BMD_3926 1ede1d48c78c28380529333f3825e193 237 Pfam PF06912 Protein of unknown function (DUF1275) 27 227 8.9E-44 T 13-10-2018 IPR010699 Protein of unknown function DUF1275 BMD_0211 f8dbd2956e1c0af5b7dc17db3371752a 295 Pfam PF03116 NQR2, RnfD, RnfE family 45 279 1.9E-15 T 13-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 BMD_2838 6e8db13eef161a4d998d16a9617dca1a 414 Pfam PF04143 Sulphur transport 67 393 6.7E-76 T 13-10-2018 IPR007272 Sulphur transport domain BMD_3371 4a73cc45d53e635857f253c7c3c3832b 254 SUPERFAMILY SSF56281 1 253 7.34E-20 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_3371 4a73cc45d53e635857f253c7c3c3832b 254 Gene3D G3DSA:3.60.15.10 1 253 2.2E-71 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BMD_3371 4a73cc45d53e635857f253c7c3c3832b 254 Pfam PF13483 Beta-lactamase superfamily domain 2 215 1.4E-13 T 13-10-2018 BMD_3307 1479c0b4e4939320194c2ce0789898e2 161 Pfam PF11181 Heat induced stress protein YflT 9 139 1.3E-15 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_1810 0cc1ff9aa899ec32d03036961d880772 289 Pfam PF03773 Predicted permease 5 287 2.7E-73 T 13-10-2018 IPR005524 Predicted permease DUF318 BMD_3880 43126bca8ca7c0e94abbe25d79197814 115 Pfam PF10842 Protein of unknown function (DUF2642) 62 110 1.1E-4 T 13-10-2018 IPR020139 Protein of unknown function DUF2642 BMD_2258 86fdc23528c6e9473d4124ba4d0d709a 163 SUPERFAMILY SSF110849 16 108 1.52E-5 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily BMD_3762 7965d6b79271851a98eea8b824e48c5e 70 Pfam PF11553 Protein of unknown function (DUF3231) 7 67 2.2E-9 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2350 5fd83c9e3ce942bc2199846bed7e3d6b 186 SUPERFAMILY SSF53850 20 171 1.41E-5 T 13-10-2018 BMD_4778 49d3adba7dc505b93c175e23bb84c89c 280 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 11 275 3.0E-7 T 13-10-2018 BMD_4778 49d3adba7dc505b93c175e23bb84c89c 280 Pfam PF12787 EcsC protein family 9 272 4.1E-45 T 13-10-2018 IPR024787 EcsC protein BMD_1780 c5542fc0d646189a5f3c828270cee4a1 65 Gene3D G3DSA:1.20.1260.10 1 65 1.2E-5 T 13-10-2018 IPR012347 Ferritin-like BMD_1602 bd9395b7502950a5c14fc2580c45133f 473 Pfam PF03606 C4-dicarboxylate anaerobic carrier 23 466 1.3E-109 T 13-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 BMD_0741 c3e22579c4f60db680ae61af4748e2c2 85 Pfam PF14069 Stage VI sporulation protein F 6 76 4.4E-28 T 13-10-2018 IPR025942 Stage VI sporulation protein F BMD_0847 f3b47192505be44658415084f6192236 156 Gene3D G3DSA:3.40.630.30 3 156 1.4E-31 T 13-10-2018 BMD_0847 f3b47192505be44658415084f6192236 156 Pfam PF00583 Acetyltransferase (GNAT) family 27 138 8.1E-11 T 13-10-2018 IPR000182 GNAT domain BMD_0847 f3b47192505be44658415084f6192236 156 SUPERFAMILY SSF55729 4 149 9.35E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4068 038a02277af19e1d4c319838140c1542 58 Pfam PF09388 Spo0E like sporulation regulatory protein 6 46 6.5E-13 T 13-10-2018 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like GO:0043937 BMD_4068 038a02277af19e1d4c319838140c1542 58 Gene3D G3DSA:1.20.58.990 4 56 1.2E-11 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_4068 038a02277af19e1d4c319838140c1542 58 SUPERFAMILY SSF140500 3 52 8.11E-14 T 13-10-2018 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily GO:0043937 BMD_2154 48dd58e2eb1c993eb229dcfc64dd100f 125 Pfam PF10127 Predicted nucleotidyltransferase 1 118 5.0E-27 T 13-10-2018 IPR018775 Nucleotidyltransferase, predicted BMD_3669 37a2629e8378e50ca395cbfc5b74a0b5 429 PIRSF PIRSF019466 2 406 4.3E-129 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 BMD_3669 37a2629e8378e50ca395cbfc5b74a0b5 429 Pfam PF04346 Ethanolamine utilisation protein, EutH 4 385 1.1E-126 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 BMD_3857 dabf50e519ad785af7fab72764028891 121 Pfam PF11518 Protein of unknown function (DUF3221) 15 118 2.5E-7 T 13-10-2018 IPR021598 Protein of unknown function DUF3221 BMD_0188 007e91aee0d926e27f291178b63ebf44 201 Pfam PF04519 Polymer-forming cytoskeletal 125 178 1.3E-6 T 13-10-2018 IPR007607 Bactofilin A/B BMD_0188 007e91aee0d926e27f291178b63ebf44 201 Pfam PF13490 Putative zinc-finger 8 38 8.3E-5 T 13-10-2018 IPR027383 Putative zinc-finger BMD_3214 9c62cccae9de649a1f46d662fe45793c 170 Gene3D G3DSA:1.20.1260.10 1 156 1.3E-65 T 13-10-2018 IPR012347 Ferritin-like BMD_3214 9c62cccae9de649a1f46d662fe45793c 170 Pfam PF11553 Protein of unknown function (DUF3231) 2 167 5.3E-40 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_1347 579e540c291d6132d4794239d1b149f8 166 ProDom PD094668 YLAL SIMILAR MW0994 BH2628 SE0810 SA0960 5 165 2.0E-48 T 13-10-2018 IPR020229 Uncharacterised protein YlaL BMD_1056 74ea5da434b9438b67a11a82db85afe2 66 Pfam PF11755 Protein of unknown function (DUF3311) 7 65 1.4E-21 T 13-10-2018 IPR021741 Protein of unknown function DUF3311 BMD_3503 2d8e384dcb9e5beb55e662283326eeba 89 Pfam PF03845 Spore germination protein 1 56 8.0E-9 T 13-10-2018 IPR004761 Spore germination GerAB GO:0009847|GO:0016021 BMD_0291 896210e8d6359a76b9ea782747408144 161 Pfam PF13058 Protein of unknown function (DUF3920) 24 154 1.7E-64 T 13-10-2018 IPR025033 Protein of unknown function DUF3920 BMD_1107 5ec3fa3ec4a9a2eaa97cb3b0027f37ed 158 Pfam PF04892 VanZ like family 9 139 8.1E-14 T 13-10-2018 IPR006976 VanZ-like BMD_5254 e6f96f629dab846f2905432b249a0f2f 314 Pfam PF09991 Predicted membrane protein (DUF2232) 15 302 3.3E-72 T 13-10-2018 IPR018710 Protein of unknown function DUF2232 BMD_1926 8cf48f6e7d79fbbf11ce77dbc3fdbe39 89 Pfam PF08765 Mor transcription activator family 9 88 1.3E-6 T 13-10-2018 IPR014875 Mor transcription activator BMD_1926 8cf48f6e7d79fbbf11ce77dbc3fdbe39 89 SUPERFAMILY SSF46689 1 88 1.14E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BMD_1926 8cf48f6e7d79fbbf11ce77dbc3fdbe39 89 Gene3D G3DSA:1.10.10.60 45 88 1.2E-5 T 13-10-2018 BMD_3195 808904d714a8b347f1118a871bb5fab5 72 Pfam PF07872 Protein of unknown function (DUF1659) 8 46 6.3E-8 T 13-10-2018 IPR012454 Protein of unknown function DUF1659 BMD_1793 735549ac79c1ae47f9e659e5a89c1cb9 114 Pfam PF11181 Heat induced stress protein YflT 4 103 2.6E-19 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_1034 e4f01df34e8b67fed8fcbacf5c939594 643 SUPERFAMILY SSF52540 97 420 6.35E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BMD_3632 2d371a49311ad962486565be77a14927 101 Pfam PF07875 Coat F domain 17 77 1.2E-22 T 13-10-2018 IPR012851 Spore coat protein CotF-like BMD_5181 fdbacd5629aa1586a588e8d9876a3daf 214 Pfam PF02163 Peptidase family M50 120 175 5.7E-8 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 BMD_2506 dd4bf6a135740a4eaa68733d29c74e76 175 SUPERFAMILY SSF158694 6 164 6.41E-47 T 13-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BMD_2506 dd4bf6a135740a4eaa68733d29c74e76 175 Gene3D G3DSA:1.10.3330.10 4 173 4.3E-58 T 13-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BMD_2506 dd4bf6a135740a4eaa68733d29c74e76 175 Pfam PF09349 OHCU decarboxylase 10 161 1.1E-41 T 13-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BMD_2506 dd4bf6a135740a4eaa68733d29c74e76 175 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 13 163 1.4E-58 T 13-10-2018 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 BMD_0993 cb74432a6e297ace30be022bd0db0515 48 Pfam PF12841 YvrJ protein family 9 43 2.7E-13 T 13-10-2018 IPR024419 Protein of unknown function YvrJ BMD_3777 077e6eeb6f62fb7aa255997f690c0a09 193 Pfam PF02659 Putative manganese efflux pump 3 82 1.8E-8 T 13-10-2018 IPR003810 Putative manganese efflux pump BMD_2941 f9631e05fc4bd97009d8c786a98dc89a 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 13 312 2.6E-46 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BMD_2237 026c62f2212304dc794d44161963f57c 158 SUPERFAMILY SSF55729 10 152 6.91E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_2237 026c62f2212304dc794d44161963f57c 158 Pfam PF00583 Acetyltransferase (GNAT) family 25 119 6.6E-11 T 13-10-2018 IPR000182 GNAT domain BMD_2237 026c62f2212304dc794d44161963f57c 158 Gene3D G3DSA:3.40.630.30 4 158 1.1E-30 T 13-10-2018 BMD_0898 db0b0a99051d845a8b3c3ff0c52e8fa1 161 SUPERFAMILY SSF55729 1 149 2.1E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_0898 db0b0a99051d845a8b3c3ff0c52e8fa1 161 Gene3D G3DSA:3.40.630.30 1 161 2.6E-38 T 13-10-2018 BMD_0898 db0b0a99051d845a8b3c3ff0c52e8fa1 161 Pfam PF00583 Acetyltransferase (GNAT) family 45 137 3.7E-17 T 13-10-2018 IPR000182 GNAT domain BMD_1538 b3ce0ea192443a2a17012b6867e2d5d7 144 SUPERFAMILY SSF47240 7 140 7.55E-30 T 13-10-2018 IPR009078 Ferritin-like superfamily BMD_1538 b3ce0ea192443a2a17012b6867e2d5d7 144 Pfam PF00210 Ferritin-like domain 9 140 7.6E-26 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BMD_1538 b3ce0ea192443a2a17012b6867e2d5d7 144 Gene3D G3DSA:1.20.1260.10 1 143 2.2E-46 T 13-10-2018 IPR012347 Ferritin-like BMD_1614 cc3f5b18fc64e687d68e7a2bf75c0673 174 Pfam PF00583 Acetyltransferase (GNAT) family 36 149 1.4E-16 T 13-10-2018 IPR000182 GNAT domain BMD_1614 cc3f5b18fc64e687d68e7a2bf75c0673 174 SUPERFAMILY SSF55729 4 164 3.6E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1614 cc3f5b18fc64e687d68e7a2bf75c0673 174 Gene3D G3DSA:3.40.630.30 4 173 5.3E-49 T 13-10-2018 BMD_3853 53941ee708f83e6ef95d1d0c5d0d666d 157 Pfam PF12732 YtxH-like protein 22 99 2.3E-17 T 13-10-2018 IPR024623 Uncharacterised protein family YtxH BMD_2183 0a2cd18d13cc4be02cb42c6587ca0f04 80 Pfam PF11132 Transcriptional regulator protein (SplA) 3 75 2.1E-39 T 13-10-2018 IPR022608 Transcription regulator SplA BMD_2183 0a2cd18d13cc4be02cb42c6587ca0f04 80 ProDom PD028055 SPLA TRANSCRIPTIONAL TRANSCRIPTION REGULATOR REGULATION 1 75 4.0E-22 T 13-10-2018 BMD_1475 0d2bcd6d0f77200e458e104bf860e309 131 Pfam PF10990 Protein of unknown function (DUF2809) 31 114 1.4E-26 T 13-10-2018 IPR021257 Protein of unknown function DUF2809 BMD_2898 2360ed08c1184ce058ab0bda5222028b 267 Hamap MF_02077 Lipid II flippase Amj [amj]. 2 264 25.532 T 13-10-2018 IPR021260 Lipid II flippase Amj BMD_2898 2360ed08c1184ce058ab0bda5222028b 267 Pfam PF10997 Alternate to MurJ 13 262 1.1E-94 T 13-10-2018 IPR021260 Lipid II flippase Amj BMD_3296 ebb0f9a48552449b7e5e0421aa17300f 94 Pfam PF05121 Gas vesicle protein K 10 94 3.7E-35 T 13-10-2018 IPR007805 Gas vesicle protein GvpK GO:0031412 BMD_2290 3688e6f5ab8b583a41a0ce44b04c6672 46 TIGRFAM TIGR03093 SASP_sspL: small, acid-soluble spore protein L 9 45 2.7E-19 T 13-10-2018 IPR017526 Small acid-soluble spore protein, SspL BMD_1927 e736ea9204ea1950281fea086cb211ff 214 Pfam PF16571 FBP C-terminal treble-clef zinc-finger 100 199 2.4E-8 T 13-10-2018 IPR032330 Elongation factor G-binding protein, C-terminal treble-clef zinc-finger BMD_1927 e736ea9204ea1950281fea086cb211ff 214 Gene3D G3DSA:1.20.1280.250 1 84 3.7E-12 T 13-10-2018 IPR038344 EF-G binding protein, N-terminal domain superfamily BMD_1927 e736ea9204ea1950281fea086cb211ff 214 Pfam PF07299 Elongation factor G-binding protein, N-terminal 4 86 8.8E-26 T 13-10-2018 IPR010841 Elongation factor G-binding protein, N-terminal BMD_3654 2b224caf8d3cf501dc24e87a4cf064b5 132 Pfam PF07681 DoxX 5 93 3.4E-20 T 13-10-2018 IPR032808 DoxX family BMD_1073 35b0e19c43354a7f9a9e3b7f8972d092 275 Pfam PF00583 Acetyltransferase (GNAT) family 27 121 2.2E-6 T 13-10-2018 IPR000182 GNAT domain BMD_1073 35b0e19c43354a7f9a9e3b7f8972d092 275 SUPERFAMILY SSF55729 2 126 1.11E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_1073 35b0e19c43354a7f9a9e3b7f8972d092 275 Gene3D G3DSA:3.40.630.30 5 128 1.5E-11 T 13-10-2018 BMD_2065 abdf3be7b7174f42d4f83dfa5ec77dd2 134 Pfam PF03788 LrgA family 18 108 7.3E-28 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 BMD_2722 5acbe61584d70707a942ce4c6634fd7f 328 Pfam PF14267 Domain of unknown function (DUF4357) 264 314 1.5E-13 T 13-10-2018 IPR025579 Domain of unknown function DUF4357 BMD_1055 36881a87c9ff1a9ad0736554f12d128e 320 Gene3D G3DSA:1.20.1530.20 1 306 2.0E-110 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily BMD_1055 36881a87c9ff1a9ad0736554f12d128e 320 Pfam PF01758 Sodium Bile acid symporter family 42 219 6.8E-45 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 BMD_2549 e645876392b6b22479779ffd2ca20f41 146 SUPERFAMILY SSF49764 21 141 1.81E-16 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_2549 e645876392b6b22479779ffd2ca20f41 146 Gene3D G3DSA:2.60.40.790 8 141 3.4E-19 T 13-10-2018 IPR008978 HSP20-like chaperone BMD_2549 e645876392b6b22479779ffd2ca20f41 146 Pfam PF00011 Hsp20/alpha crystallin family 41 143 1.2E-9 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain BMD_0594 7e5bd51bca3269704ade83c03bb3da53 401 Pfam PF05975 Bacterial ABC transporter protein EcsB 6 380 5.7E-122 T 13-10-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 BMD_0594 7e5bd51bca3269704ade83c03bb3da53 401 PIRSF PIRSF037259 2 401 7.0E-121 T 13-10-2018 IPR010288 Bacterial ABC transporter EcsB GO:0016021 BMD_3635 54c598c430159acfbe53f9b41dbd5bca 138 Gene3D G3DSA:3.30.750.24 86 138 1.4E-5 T 13-10-2018 IPR036513 STAS domain superfamily BMD_2778 f672b491166e517761bfb9ddea65fbc2 393 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 4 166 1.0E-31 T 13-10-2018 IPR017500 Phage infection protein, YhgE, N-terminal BMD_2778 f672b491166e517761bfb9ddea65fbc2 393 Pfam PF12051 Protein of unknown function (DUF3533) 20 355 2.1E-23 T 13-10-2018 IPR022703 Domain of unknown function DUF3533 BMD_5152 a57e6e1addcf64f092701c57a43e58d7 148 SUPERFAMILY SSF55729 1 133 7.46E-7 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_5152 a57e6e1addcf64f092701c57a43e58d7 148 Gene3D G3DSA:3.40.630.30 2 135 2.6E-11 T 13-10-2018 BMD_4542 436071bab3c68a69d7613c706326d744 153 PIRSF PIRSF021361 8 153 5.7E-59 T 13-10-2018 IPR016788 Uncharacterised conserved protein UCP021361 BMD_2410 025e8c84433584c8545fd43af55ee206 65 Pfam PF06150 ChaB 9 65 3.2E-25 T 13-10-2018 IPR009317 ChaB BMD_2410 025e8c84433584c8545fd43af55ee206 65 SUPERFAMILY SSF140376 2 65 9.15E-25 T 13-10-2018 IPR037205 ChaB superfamily BMD_2410 025e8c84433584c8545fd43af55ee206 65 Gene3D G3DSA:1.10.1740.70 2 65 1.0E-26 T 13-10-2018 BMD_4658 a483cdb7faaee2cdec991db567882cf3 360 Pfam PF05036 Sporulation related domain 184 249 1.4E-5 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 BMD_3921 fa6080ea5e790a5776511079189d21c4 254 Pfam PF01925 Sulfite exporter TauE/SafE 6 253 3.9E-45 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BMD_2684 3f6d3002f4dc85736ff4f60ba314a49c 538 Pfam PF14266 Putative component of 'biosynthetic module' 40 528 5.1E-148 T 13-10-2018 IPR025647 Putative component of 'biosynthetic module' BMD_4446 a29089d81f85b79f1a999a095300db8f 133 Pfam PF03780 Asp23 family, cell envelope-related function 16 121 6.9E-36 T 13-10-2018 IPR005531 Alkaline shock protein Asp23 BMD_0348 c36876fa63a747ba83c35adcd9b75f47 130 Pfam PF07179 SseB protein N-terminal domain 8 120 9.2E-16 T 13-10-2018 IPR009839 SseB protein N-terminal domain BMD_4295 0cbf05234f35dfe0740aba7a7d79bac0 195 Pfam PF07187 Protein of unknown function (DUF1405) 24 181 9.9E-57 T 13-10-2018 IPR009845 Protein of unknown function DUF1405 BMD_4153 d916429ccecddf7b39fd2945c14b9016 175 ProDom PD177368 TRANSCRIPTION DNA-BINDING MOTILITY SWRB SWARMING YLXL REGULATION BH2428 1 174 1.0E-10 T 13-10-2018 BMD_4976 3fbf0816457c6cabd49d6dca721e14f1 465 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 10 456 2.4E-234 T 13-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 BMD_4976 3fbf0816457c6cabd49d6dca721e14f1 465 SUPERFAMILY SSF101960 32 462 2.75E-141 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BMD_4976 3fbf0816457c6cabd49d6dca721e14f1 465 Pfam PF01458 Uncharacterized protein family (UPF0051) 211 436 1.9E-75 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BMD_2273 3a621a0d93b8b478911b5631f16c829d 55 Pfam PF13076 Fur-regulated basic protein A 10 42 4.7E-9 T 13-10-2018 IPR025072 Fur-regulated basic protein A BMD_1471 2a473bd17bd947c00a0123ae11a3293c 174 Gene3D G3DSA:2.60.120.10 1 167 2.5E-63 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_1471 2a473bd17bd947c00a0123ae11a3293c 174 Pfam PF06172 Cupin superfamily (DUF985) 8 146 5.7E-48 T 13-10-2018 IPR009327 Cupin domain of unknown function DUF985 BMD_1471 2a473bd17bd947c00a0123ae11a3293c 174 SUPERFAMILY SSF51182 4 166 6.52E-60 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_0876 dfbd4f8435fb59fa4d744b2c3e7bbb8c 66 Pfam PF11553 Protein of unknown function (DUF3231) 9 60 3.6E-11 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_4066 8c173353af3129f6332f251e28f7700f 155 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 79 131 3.0E-7 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 BMD_0810 9973bb1d5bb259d768aa62ff75f990b2 351 Gene3D G3DSA:2.60.40.1240 29 166 6.0E-10 T 13-10-2018 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily BMD_0810 9973bb1d5bb259d768aa62ff75f990b2 351 Pfam PF17118 Domain of unknown function (DUF5105) 162 345 8.7E-59 T 13-10-2018 IPR031343 Domain of unknown function DUF5105 BMD_1802 203b68a938220396b47831ab74c9a33e 164 Pfam PF11181 Heat induced stress protein YflT 9 61 8.4E-12 T 13-10-2018 IPR025889 General stress protein 17M-like domain BMD_2738 a213c61ef287892ee2c439fce4392eae 276 SUPERFAMILY SSF161098 5 276 4.32E-66 T 13-10-2018 IPR035906 MetI-like superfamily BMD_2738 a213c61ef287892ee2c439fce4392eae 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 267 1.8E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BMD_2738 a213c61ef287892ee2c439fce4392eae 276 Gene3D G3DSA:1.10.3720.10 2 263 9.4E-59 T 13-10-2018 IPR035906 MetI-like superfamily BMD_1069 3cc098e37dd501d1bc4862146f8de3cb 55 Pfam PF13076 Fur-regulated basic protein A 12 46 7.1E-14 T 13-10-2018 IPR025072 Fur-regulated basic protein A BMD_4360 46a5c93a7a806dd4d436ccadd26a9b8e 199 Pfam PF07670 Nucleoside recognition 43 149 9.6E-12 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_4574 ab0d30552c8d43639f1ec7895345adf6 260 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 48 213 3.2E-43 T 13-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 BMD_4574 ab0d30552c8d43639f1ec7895345adf6 260 Pfam PF02666 Phosphatidylserine decarboxylase 59 256 3.5E-51 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 BMD_0963 7616b2c9a8838b91c2260f3fa440caa3 395 Pfam PF01566 Natural resistance-associated macrophage protein 43 363 3.2E-24 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BMD_4948 461c0c70dd50820011fb6772e7a0e7ab 158 Pfam PF02681 Divergent PAP2 family 5 149 1.0E-50 T 13-10-2018 IPR003832 Protein of unknown function DUF212 BMD_1637 47f5d32c9ca24713574f201069135148 195 Pfam PF16107 Domain of unknown function (DUF4825) 38 130 9.4E-13 T 13-10-2018 IPR032250 Domain of unknown function DUF4825 BMD_0495 913d3498ad738fc34ab50bf2f15c39e1 298 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 6 294 2.8E-127 T 13-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 BMD_0495 913d3498ad738fc34ab50bf2f15c39e1 298 Gene3D G3DSA:3.20.20.150 2 295 2.5E-77 T 13-10-2018 BMD_0495 913d3498ad738fc34ab50bf2f15c39e1 298 Pfam PF01261 Xylose isomerase-like TIM barrel 37 248 1.7E-22 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BMD_0495 913d3498ad738fc34ab50bf2f15c39e1 298 SUPERFAMILY SSF51658 7 294 4.58E-54 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily BMD_0495 913d3498ad738fc34ab50bf2f15c39e1 298 Hamap MF_01672 Inosose dehydratase [iolE]. 2 298 57.177 T 13-10-2018 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 BMD_2612 aedb190c2a1cadeeb8aa463a0826e0aa 125 PIRSF PIRSF033725 2 125 2.5E-24 T 13-10-2018 IPR017020 Uncharacterised conserved protein UCP033725 BMD_1672 7010e0abae3edd53754064602259d314 68 Pfam PF06906 Protein of unknown function (DUF1272) 2 55 1.5E-22 T 13-10-2018 IPR010696 Protein of unknown function DUF1272 BMD_1885 9f52b766a3f5738565e5ef3743d63fe7 64 Pfam PF02416 mttA/Hcf106 family 3 51 1.4E-17 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BMD_5192 5f95de5a679a8818d49e2e6893655a89 123 Pfam PF04241 Protein of unknown function (DUF423) 18 105 1.3E-32 T 13-10-2018 IPR006696 Protein of unknown function DUF423 BMD_2257 01c2e7a661aa17038ef045f3277ed7c7 425 SUPERFAMILY SSF56349 20 160 1.18E-16 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BMD_2257 01c2e7a661aa17038ef045f3277ed7c7 425 Gene3D G3DSA:1.10.150.130 13 139 2.5E-11 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal BMD_2257 01c2e7a661aa17038ef045f3277ed7c7 425 Pfam PF13102 Phage integrase SAM-like domain 30 126 2.6E-7 T 13-10-2018 IPR025269 Phage integrase SAM-like domain BMD_2802 258b25973363c7d66e4afd79f3c22dce 166 Gene3D G3DSA:1.20.120.450 11 159 4.3E-11 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2802 258b25973363c7d66e4afd79f3c22dce 166 SUPERFAMILY SSF109854 14 159 7.14E-17 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes BMD_2802 258b25973363c7d66e4afd79f3c22dce 166 Pfam PF12867 DinB superfamily 18 152 9.9E-15 T 13-10-2018 IPR024775 DinB-like domain BMD_4008 a406ea3b49c88f5048351da9c509b4e0 388 Pfam PF01098 Cell cycle protein 15 380 5.9E-97 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BMD_1154 0e6750f0238e158db2e2a5003a7f45cc 172 Pfam PF14435 SUKH-4 immunity protein 12 166 6.5E-18 T 13-10-2018 IPR025851 SUKH-4 immunity protein BMD_3420 b5536dfb5731111147edb45907d7dd3d 286 Pfam PF01969 Protein of unknown function DUF111 4 283 2.3E-94 T 13-10-2018 IPR002822 Nickel insertion protein BMD_3240 57f1f33012a577d796ed7215ba3792b1 127 Gene3D G3DSA:3.10.450.50 1 127 5.1E-46 T 13-10-2018 BMD_3240 57f1f33012a577d796ed7215ba3792b1 127 Pfam PF12680 SnoaL-like domain 6 110 6.8E-7 T 13-10-2018 IPR037401 SnoaL-like domain BMD_3240 57f1f33012a577d796ed7215ba3792b1 127 SUPERFAMILY SSF54427 4 117 5.76E-21 T 13-10-2018 IPR032710 NTF2-like domain superfamily BMD_0967 f7023962621516a95e3c0a206031ce57 209 Pfam PF07799 Protein of unknown function (DUF1643) 15 145 4.1E-20 T 13-10-2018 IPR012441 Protein of unknown function DUF1643 BMD_0609 ce5013552b62198878b17096e787cad0 43 Pfam PF14149 YhfH-like protein 2 38 2.3E-20 T 13-10-2018 IPR025432 YhfH-like protein BMD_5217 eaca24f56d8b6819c4838b1ce68bba1e 468 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 443 3.7E-172 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BMD_5217 eaca24f56d8b6819c4838b1ce68bba1e 468 PIRSF PIRSF006446 1 468 7.1E-179 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BMD_0736 618c7473566555c865a60c1d650c7ea5 111 Pfam PF07098 Protein of unknown function (DUF1360) 8 109 1.0E-38 T 13-10-2018 IPR010773 Mycobacterium phage PG1, Gp7 BMD_2570 036b8553d9401d2eedb07dfa3779d614 105 Pfam PF11345 Protein of unknown function (DUF3147) 19 91 4.0E-7 T 13-10-2018 IPR021493 Protein of unknown function DUF3147 BMD_4199 52cd695a33d4bca8edacda8fe4539e33 127 Pfam PF11068 YlqD protein 1 127 1.3E-35 T 13-10-2018 IPR021297 YlqD protein BMD_3768 2d9a2b146b67fcfe8292796f2f6b7508 170 Gene3D G3DSA:1.20.1260.10 1 156 4.7E-65 T 13-10-2018 IPR012347 Ferritin-like BMD_3768 2d9a2b146b67fcfe8292796f2f6b7508 170 Pfam PF11553 Protein of unknown function (DUF3231) 2 167 6.2E-39 T 13-10-2018 IPR021617 Protein of unknown function DUF3231 BMD_2203 23d53fb44f6a71901dbf50edf274f9da 312 Pfam PF04294 VanW like protein 147 276 7.3E-50 T 13-10-2018 IPR007391 Vancomycin resistance VanW BMD_1809 0aa043efa2b72fe93aec96dbd1c627f6 283 Pfam PF09323 Domain of unknown function (DUF1980) 1 187 7.8E-53 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 BMD_1809 0aa043efa2b72fe93aec96dbd1c627f6 283 TIGRFAM TIGR03943 TIGR03943: TIGR03943 family protein 20 277 1.7E-67 T 13-10-2018 IPR015402 Protein of unknown function DUF1980 BMD_2799 17fe7f4e17b7db260fe7b3999a665a64 126 Pfam PF13564 DoxX-like family 7 109 8.4E-21 T 13-10-2018 IPR032808 DoxX family BMD_4366 6e6091c0c33c9f4e0b0b5053f13f9a99 117 Gene3D G3DSA:3.40.630.30 5 114 2.0E-13 T 13-10-2018 BMD_4366 6e6091c0c33c9f4e0b0b5053f13f9a99 117 SUPERFAMILY SSF55729 7 98 1.1E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase BMD_4366 6e6091c0c33c9f4e0b0b5053f13f9a99 117 Pfam PF13673 Acetyltransferase (GNAT) domain 30 111 2.8E-9 T 13-10-2018 IPR000182 GNAT domain BMD_2494 e27ae0fb451bf5dff8ff417f111c54fa 325 Pfam PF13536 Putative multidrug resistance efflux transporter 38 304 6.3E-91 T 13-10-2018 IPR032713 Putative multidrug resistance efflux transporter BMD_2211 f184e7cdd42c34ad0778061dda3c8b02 350 Pfam PF04230 Polysaccharide pyruvyl transferase 14 283 3.0E-29 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase BMD_4461 05ff19f694aaa8472fa12b6959d34dfe 178 ProDom PD101610 MEMBRANE YQHR BH2802 TRANSMEMBRANE IG 44 164 6.0E-24 T 13-10-2018 IPR024563 Uncharacterised protein family YqhR BMD_4461 05ff19f694aaa8472fa12b6959d34dfe 178 Pfam PF11085 Conserved membrane protein YqhR 9 169 4.2E-65 T 13-10-2018 IPR024563 Uncharacterised protein family YqhR BMD_1754 3f59700bc32fcca1b4573c759142ad31 194 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 12 190 2.0E-39 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_2632 6d440888fb06c018436dd0fba2e99236 211 Pfam PF08795 Putative papain-like cysteine peptidase (DUF1796) 15 164 1.8E-16 T 13-10-2018 IPR014903 Protein of unknown function DUF1796 BMD_4018 3c9f27c7544f7f816ce16d54dd187fa0 353 Pfam PF10720 Protein of unknown function (DUF2515) 42 331 8.6E-109 T 13-10-2018 IPR019658 Protein of unknown function DUF2515 BMD_3408 a4711d76cdbc42eb1e4e609186f22efb 43 Pfam PF13040 Fur-regulated basic protein B 4 38 1.3E-16 T 13-10-2018 IPR025004 Transcriptional regulatory protein SenN/SenS BMD_2940 b42410915783011e6075590bade5cbee 398 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 356 1.2E-47 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BMD_1912 0dcf665a6df50dc3c381be6c30df5f31 303 Pfam PF03547 Membrane transport protein 12 144 3.6E-10 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BMD_0698 9aca78cbcc9c7b12fd969a13984a2a5e 257 Pfam PF10026 Predicted Zn-dependent protease (DUF2268) 59 251 4.6E-56 T 13-10-2018 IPR018728 Domain of unknown function DUF2268 BMD_1029 9c2b42a2f394a18903cb22bd2d8538d9 420 Pfam PF03611 PTS system sugar-specific permease component 8 404 6.4E-147 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 BMD_0263 b0972943e06f05ea9811d1279baa1cd2 396 Pfam PF01882 Protein of unknown function DUF58 197 259 1.7E-13 T 13-10-2018 IPR002881 Domain of unknown function DUF58 BMD_0895 9d979043c465dfb5413148bf7ece3d9b 61 Pfam PF12669 Virus attachment protein p12 family 3 45 6.2E-9 T 13-10-2018 BMD_3429 1084ca5cf04699f66236559e1ac457b7 213 Pfam PF13346 ABC-2 family transporter protein 1 208 5.7E-32 T 13-10-2018 IPR025699 ABC-2 membrane transporter-like BMD_3779 613ed48744ab1e74fce1b477bd008275 59 Pfam PF03779 SPW repeat 8 47 1.2E-9 T 13-10-2018 IPR005530 SPW repeat BMD_1305 7a2f3c3133961a38a4cf140420341aae 160 Pfam PF13158 Protein of unknown function (DUF3993) 5 121 5.3E-16 T 13-10-2018 IPR025056 Protein of unknown function DUF3993 BMD_0330 1b82686719fd8f4924dccaeef18ca832 140 Pfam PF07681 DoxX 9 87 8.5E-22 T 13-10-2018 IPR032808 DoxX family BMD_1341 f29fbfce2775e4519d4ebbb025b7b69c 105 Pfam PF14036 YlaH-like protein 20 93 4.7E-30 T 13-10-2018 IPR025620 YlaH-like protein BMD_4390 2550a82df57288d4b44e5aed4c4caba4 82 Pfam PF13025 Protein of unknown function (DUF3886) 12 77 1.0E-17 T 13-10-2018 IPR024980 Protein of unknown function DUF3886 BMD_1624 cccc7afe1a1b1ab4a56adc69b8eee6d6 165 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 9 148 2.0E-24 T 13-10-2018 IPR018639 Domain of unknown function DUF2062 BMD_2568 10286c73c66c0a59e5ff35055a58b035 157 Pfam PF13826 Domain of unknown function (DUF4188) 15 131 5.7E-45 T 13-10-2018 IPR025444 Monooxygenase af470-like BMD_2568 10286c73c66c0a59e5ff35055a58b035 157 ProDom PD320837 DEHYDRATASE PHENYLACETALDOXIME ALDOXIME LYASE METAL-BINDING IRON HEME TRUNCATION DIRECT 4.2.1.- 35 133 7.0E-5 T 13-10-2018 IPR025702 Haem-containing dehydratase KEGG: 00460+4.99.1.7|KEGG: 00643+4.99.1.7|MetaCyc: PWY-7824 BMD_2757 d111df8247f7631f8bc824d318f06f93 126 Pfam PF06803 Protein of unknown function (DUF1232) 36 71 4.3E-12 T 13-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 BMD_3166 60909b585bd000a2ca45ee3ba75b63da 168 Pfam PF13798 Protein of unknown function with PCYCGC motif 9 166 6.5E-62 T 13-10-2018 IPR025673 Protein of unknown function with PCYCGC motif BMD_0654 8cd7405a18e444669143bd35a66c1a94 115 Pfam PF07457 Protein of unknown function (DUF1516) 4 110 1.2E-27 T 13-10-2018 IPR010899 Protein of unknown function UPF0344 BMD_3373 16e63c0dacd9885a0a5eb63c86052c63 329 Pfam PF13170 Protein of unknown function (DUF4003) 17 311 3.3E-88 T 13-10-2018 IPR025062 Protein of unknown function DUF4003 BMD_1839 06cff27e8c0297958c410e3061fb01bd 94 Pfam PF17247 Family of unknown function (DUF5316) 33 94 8.4E-10 T 13-10-2018 IPR035167 Protein of unknown function DUF5316 BMD_3766 00a62df494a22b96581737c2e4f7dd2f 87 Pfam PF06949 Protein of unknown function (DUF1292) 14 74 4.1E-8 T 13-10-2018 IPR009711 Uncharacterised protein family UPF0473 BMD_4784 9c39f332feef9d54176b0e66d099171b 167 Pfam PF06271 RDD family 30 155 1.4E-23 T 13-10-2018 IPR010432 RDD BMD_1567 c556159a7336f97205262ad0cb0f2da2 486 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 12 457 6.2E-125 T 13-10-2018 IPR003846 Uncharacterised protein family UPF0061 BMD_1567 c556159a7336f97205262ad0cb0f2da2 486 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 7 472 44.903 T 13-10-2018 IPR003846 Uncharacterised protein family UPF0061 BMD_1903 00e82390309ba2904872c7a7a99aa843 330 Pfam PF07907 YibE/F-like protein 88 319 6.1E-75 T 13-10-2018 IPR012507 YibE/F-like BMD_4621 b6706be8f43293474f443f811cdf4344 97 Pfam PF13797 Post-transcriptional regulator 9 83 1.0E-28 T 13-10-2018 IPR025716 Post-transcriptional regulator BMD_4839 143778e73534fc52c6b6d54230457cff 87 Pfam PF10732 Protein of unknown function (DUF2524) 1 83 2.4E-37 T 13-10-2018 IPR019668 Uncharacterised protein family YtzC BMD_0407 6a1cf558a70bda92aa24fa3ee8cad47a 86 Pfam PF14182 YgaB-like protein 4 78 1.4E-31 T 13-10-2018 IPR025572 YgaB-like protein BMD_0777 4a0baa9c278b72847e2b372102e3eb2a 226 Hamap MF_01142 Antiholin-like protein LrgB [lrgB]. 1 226 31.491 T 13-10-2018 IPR024891 Antiholin-like protein LrgB BMD_0777 4a0baa9c278b72847e2b372102e3eb2a 226 Pfam PF04172 LrgB-like family 10 223 3.4E-68 T 13-10-2018 IPR007300 CidB/LrgB family BMD_5004 39dfd469eabcc848c0a4cff847f59862 194 Pfam PF04367 Protein of unknown function (DUF502) 56 157 3.9E-28 T 13-10-2018 IPR007462 Protein of unknown function DUF502 BMD_5212 fedcf5cb200ae8aa8057d35e338a2010 458 Pfam PF13425 O-antigen ligase like membrane protein 11 450 5.3E-105 T 13-10-2018 BMD_3477 5cd6455b812ad9b19c52720e62222007 175 Gene3D G3DSA:2.60.120.10 53 175 1.7E-43 T 13-10-2018 IPR014710 RmlC-like jelly roll fold BMD_3477 5cd6455b812ad9b19c52720e62222007 175 Pfam PF07883 Cupin domain 78 153 1.8E-16 T 13-10-2018 IPR013096 Cupin 2, conserved barrel BMD_3477 5cd6455b812ad9b19c52720e62222007 175 SUPERFAMILY SSF51182 39 159 3.53E-28 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily BMD_3227 e37b30a923fd4ae93292c52b0e31e91e 218 Pfam PF06161 Protein of unknown function (DUF975) 123 211 2.9E-24 T 13-10-2018 IPR010380 Protein of unknown function DUF975 BMD_3227 e37b30a923fd4ae93292c52b0e31e91e 218 Pfam PF06161 Protein of unknown function (DUF975) 2 131 1.1E-8 T 13-10-2018 IPR010380 Protein of unknown function DUF975 BMD_3414 96ec9a0a7af57a975ca1cd3b22127b0d 170 Pfam PF07301 Protein of unknown function (DUF1453) 8 160 2.3E-30 T 13-10-2018 IPR009916 Protein of unknown function DUF1453 BMD_3549 b92249d832331636272e70951fa230d4 216 Pfam PF06161 Protein of unknown function (DUF975) 121 210 2.3E-30 T 13-10-2018 IPR010380 Protein of unknown function DUF975 BMD_3549 b92249d832331636272e70951fa230d4 216 Pfam PF06161 Protein of unknown function (DUF975) 1 128 7.0E-12 T 13-10-2018 IPR010380 Protein of unknown function DUF975 BMD_2658 f1ddf7682f2a63ee56b9b81b28ad9411 264 Pfam PF00795 Carbon-nitrogen hydrolase 5 243 2.2E-58 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BMD_2658 f1ddf7682f2a63ee56b9b81b28ad9411 264 Gene3D G3DSA:3.60.110.10 2 262 1.0E-79 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_2658 f1ddf7682f2a63ee56b9b81b28ad9411 264 SUPERFAMILY SSF56317 1 260 9.55E-77 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BMD_0515 ed1bc891db40ba11151f8c746a133900 147 Pfam PF10787 Uncharacterised protein from bacillus cereus group 1 141 3.9E-56 T 13-10-2018 IPR019723 Uncharacterised protein, YfmQ BMD_0401 e9ac4744bcf2efe270ba1d6ba97a2edd 89 Pfam PF14043 WVELL protein 3 76 2.9E-38 T 13-10-2018 IPR026952 WVELL protein BMD_2732 e5a73452d4ea5425569c10534afe9f4c 234 Pfam PF14424 The BURPS668_1122 family of deaminases 123 233 1.1E-28 T 13-10-2018 IPR032721 Deaminases, BURPS668_1122 family BMD_3302 6a6efd425f0fcb177be69a5ff83436b7 88 Pfam PF05800 Gas vesicle synthesis protein GvpO 4 81 9.2E-9 T 13-10-2018 IPR008634 Gas vesicle protein GvpO GO:0031412 BMD_4722 35dbf8de559e15c90a63de0e80ce7302 135 Pfam PF03994 Domain of Unknown Function (DUF350) 80 134 4.6E-15 T 13-10-2018 IPR007140 Protein of unknown function DUF350 BMD_4722 35dbf8de559e15c90a63de0e80ce7302 135 Pfam PF03994 Domain of Unknown Function (DUF350) 15 68 9.7E-13 T 13-10-2018 IPR007140 Protein of unknown function DUF350 BMD_3135 bf8deafc5309d3ffaedfd5ce7bf846cc 238 Pfam PF02517 CAAX protease self-immunity 146 230 4.0E-19 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BMD_3744 27dadf54d642440a90eb9960bd8468cd 136 Pfam PF10710 Protein of unknown function (DUF2512) 1 130 9.8E-34 T 13-10-2018 IPR019649 Protein of unknown function DUF2512 BMD_2530 29f92c47ac3556dc3831896176e460b0 255 Pfam PF08892 YqcI/YcgG family 32 241 4.1E-78 T 13-10-2018 IPR014988 Uncharacterised protein family, YqcI/YcgG BMD_1361 5bf152285de2c3f8a6a6c1417298164c 258 Pfam PF09577 Sporulation protein YpjB (SpoYpjB) 27 251 1.2E-65 T 13-10-2018 IPR014231 Sporulation protein YpjB BMD_3993 a93252f04c6d16c96f7adede1786bb3b 269 Pfam PF14344 Domain of unknown function (DUF4397) 130 224 3.1E-18 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 BMD_3993 a93252f04c6d16c96f7adede1786bb3b 269 Pfam PF14344 Domain of unknown function (DUF4397) 31 146 2.4E-35 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 BMD_3060 ebbeec2c61153112cbbe8367a9abd0f9 226 Pfam PF14344 Domain of unknown function (DUF4397) 38 153 3.1E-30 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 BMD_3060 ebbeec2c61153112cbbe8367a9abd0f9 226 Pfam PF14344 Domain of unknown function (DUF4397) 160 226 1.7E-8 T 13-10-2018 IPR025510 Domain of unknown function DUF4397 BMD_1449 9ced0eefa2e91a27eb670a55e8760842 90 ProDom PD062992 CYTOSOLIC YPZA BH2151 14 89 4.0E-14 T 13-10-2018 IPR020314 Uncharacterised protein family YpzA BMD_1449 9ced0eefa2e91a27eb670a55e8760842 90 Pfam PF10819 Protein of unknown function (DUF2564) 12 89 1.5E-36 T 13-10-2018 IPR020314 Uncharacterised protein family YpzA BMD_4065 d0478692a56ae30349338e631e89295f 163 PIRSF PIRSF021441 1 158 1.8E-71 T 13-10-2018 IPR031306 CcdC protein BMD_4065 d0478692a56ae30349338e631e89295f 163 Pfam PF07301 Protein of unknown function (DUF1453) 4 147 3.4E-62 T 13-10-2018 IPR009916 Protein of unknown function DUF1453 BMD_3179 6aabfbb80b86f46471c0a938c55fd4a8 210 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 9 179 6.6E-40 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT BMD_2347 ae6a1b996e5332d1f44ebe21dd63c513 189 Gene3D G3DSA:1.10.10.60 151 189 4.0E-5 T 13-10-2018 BMD_3875 bf635dd9f15acb79bb91f2eab9744bc5 131 Pfam PF07681 DoxX 8 86 3.5E-20 T 13-10-2018 IPR032808 DoxX family BMD_3233 bd225348ea8534048c9bedaa5a827cae 109 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 104 9.1E-24 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD BMD_0335 b928a466b68368423414d27efde305e2 484 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 447 3.8E-146 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0335 b928a466b68368423414d27efde305e2 484 Pfam PF01235 Sodium:alanine symporter family 49 459 3.6E-158 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0335 b928a466b68368423414d27efde305e2 484 PRINTS PR00175 Sodium/alanine symporter signature 295 313 1.2E-59 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0335 b928a466b68368423414d27efde305e2 484 PRINTS PR00175 Sodium/alanine symporter signature 353 375 1.2E-59 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0335 b928a466b68368423414d27efde305e2 484 PRINTS PR00175 Sodium/alanine symporter signature 204 223 1.2E-59 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0335 b928a466b68368423414d27efde305e2 484 PRINTS PR00175 Sodium/alanine symporter signature 416 436 1.2E-59 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0335 b928a466b68368423414d27efde305e2 484 PRINTS PR00175 Sodium/alanine symporter signature 86 108 1.2E-59 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0335 b928a466b68368423414d27efde305e2 484 PRINTS PR00175 Sodium/alanine symporter signature 176 194 1.2E-59 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 BMD_0208 f7890c88b6fe0f55e92c43e51e13d283 370 Pfam PF01757 Acyltransferase family 13 339 3.6E-29 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BMD_1923 18cad8debefdbd8bf9fa70f15df1067c 74 Pfam PF13031 Protein of unknown function (DUF3892) 5 72 8.4E-15 T 13-10-2018 IPR024997 Protein of unknown function DUF3892 BMD_4359 e1de3d11c91e98daff62684844b1d9c7 177 Pfam PF07670 Nucleoside recognition 46 146 2.5E-6 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BMD_2179 0bcf718b40c0a9778373f5d0de53ff7b 246 Pfam PF12730 ABC-2 family transporter protein 1 174 8.0E-15 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 BMD_2936 1258921d4c18d42548fe37d2fc572ddd 365 Pfam PF01757 Acyltransferase family 5 341 2.3E-26 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BMD_1286 0590ebcfe6d259d220b2c75c5f946efe 122 Pfam PF03788 LrgA family 18 109 1.9E-29 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 BMD_3517 d5011f0bb8752afbc05c3f2bce3c9756 76 Pfam PF13129 Protein of unknown function (DUF3953) 34 72 2.5E-14 T 13-10-2018 IPR025018 Protein of unknown function DUF3953 BMD_2152 03166a3602f68a425e4c8787e5815cf5 124 SUPERFAMILY SSF103473 2 120 2.35E-7 T 13-10-2018 IPR036259 MFS transporter superfamily BMD_3398 25c943eadf7cabe067314692a3c0a7fe 167 Pfam PF07308 Protein of unknown function (DUF1456) 101 167 1.3E-21 T 13-10-2018 IPR009921 Domain of unknown function DUF1456 BMD_3398 25c943eadf7cabe067314692a3c0a7fe 167 Pfam PF07308 Protein of unknown function (DUF1456) 3 79 1.6E-26 T 13-10-2018 IPR009921 Domain of unknown function DUF1456 BMD_1155 c6895513f37643a0315af5b3a5a5e1a0 92 Pfam PF14150 YesK-like protein 5 80 6.4E-21 T 13-10-2018 IPR025434 YesK-like protein BMD_4522 9eef0b3228116ece533285c4ef967914 234 Pfam PF14181 YqfQ-like protein 68 234 2.8E-57 T 13-10-2018 IPR025571 YqfQ-like protein BMD_4821 c62622fa355f441b5ac322d044d55757 92 Pfam PF14165 YtzH-like protein 3 88 6.3E-37 T 13-10-2018 IPR025547 YtzH-like protein BMD_0782 d1386846869d32aeac88dd4716925645 224 SUPERFAMILY SSF53187 31 209 1.78E-8 T 13-10-2018 BMD_1240 62654a676db9a40a0e4ee68330a4be0b 344 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 329 4.0E-46 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BMD_2070 adda3b8698030993c27601346690c8c2 745 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 76 234 2.1E-32 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like BMD_1557 d25d8ba3418d62391a5ef3f9e4dde4ec 68 Pfam PF00477 Small hydrophilic plant seed protein 13 66 7.0E-8 T 13-10-2018 IPR038956 Late embryogenesis abundant protein, LEA_5 subgroup BMD_0324 aa343fb7b98729fff628649f25cf7b12 227 Pfam PF12679 ABC-2 family transporter protein 2 225 3.0E-9 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 BMD_4842 3c92a106f81d23705e50784c7e0ed82b 352 Pfam PF10776 Protein of unknown function (DUF2600) 20 348 9.1E-149 T 13-10-2018 IPR019712 Protein of unknown function DUF2600 BMD_1888 0ad0290d6557a4f29bf9c3d3883dda8f 81 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 3 75 3.8E-25 T 13-10-2018 IPR018680 Protein of unknown function DUF2164 BMD_2436 41c310c2bc210c8c05df3296ac633866 320 Pfam PF04294 VanW like protein 184 312 1.1E-47 T 13-10-2018 IPR007391 Vancomycin resistance VanW