locus-tag class description AS52_00019 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AS52_00019 PF01276 Orn/Lys/Arg decarboxylase, major domain AS52_00020 PF02223 Thymidylate kinase AS52_00021 PF06153 Cyclic-di-AMP receptor AS52_00022 PF09115 DNA polymerase III, delta subunit, C terminal AS52_00023 PF04468 PSP1 C-terminal conserved region AS52_00024 PF06156 Initiation control protein YabA AS52_00025 PF05175 Methyltransferase small domain AS52_00026 PF01541 GIY-YIG catalytic domain AS52_00027 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_00028 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS52_00028 PF18277 AbrB C-terminal domain AS52_00029 PF08264 Anticodon-binding domain of tRNA AS52_00029 PF09334 tRNA synthetases class I (M) AS52_00029 PF01588 Putative tRNA binding domain AS52_00030 PF01026 TatD related DNase AS52_00031 PF13662 Toprim domain AS52_00031 PF13331 Domain of unknown function (DUF4093) AS52_00032 PF00398 Ribosomal RNA adenine dimethylase AS52_00033 PF05582 YabG peptidase U57 AS52_00034 PF06257 Biofilm formation stimulator VEG AS52_00035 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_00036 PF00288 GHMP kinases N terminal domain AS52_00036 PF08544 GHMP kinases C terminal AS52_00037 PF09182 Bacterial purine repressor, N-terminal AS52_00037 PF00156 Phosphoribosyl transferase domain AS52_00038 PF01042 Endoribonuclease L-PSP AS52_00039 PF04026 SpoVG AS52_00040 PF00132 Bacterial transferase hexapeptide (six repeats) AS52_00040 PF00483 Nucleotidyl transferase AS52_00041 PF14572 Phosphoribosyl synthetase-associated domain AS52_00041 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AS52_00042 PF14693 Ribosomal protein TL5, C-terminal domain AS52_00042 PF01386 Ribosomal L25p family AS52_00043 PF01195 Peptidyl-tRNA hydrolase AS52_00044 PF10955 Protein of unknown function (DUF2757) AS52_00045 PF17757 UvrB interaction domain AS52_00045 PF00270 DEAD/DEAH box helicase AS52_00045 PF02559 CarD-like/TRCF domain AS52_00045 PF00271 Helicase conserved C-terminal domain AS52_00045 PF03461 TRCF domain AS52_00046 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS52_00046 PF15714 Stage V sporulation protein T C-terminal, transcription factor AS52_00047 PF01943 Polysaccharide biosynthesis protein AS52_00047 PF14667 Polysaccharide biosynthesis C-terminal domain AS52_00048 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_00048 PF03819 MazG nucleotide pyrophosphohydrolase domain AS52_00049 PF01479 S4 domain AS52_00050 PF07873 YabP family AS52_00051 PF09578 Spore cortex protein YabQ (Spore_YabQ) AS52_00052 PF04977 Septum formation initiator AS52_00053 PF00575 S1 RNA binding domain AS52_00056 PF07228 Stage II sporulation protein E (SpoIIE) AS52_00057 PF00092 von Willebrand factor type A domain AS52_00058 PF00069 Protein kinase domain AS52_00059 PF11734 TilS substrate C-terminal domain AS52_00059 PF01171 PP-loop family AS52_00059 PF09179 TilS substrate binding domain AS52_00061 PF06480 FtsH Extracellular AS52_00061 PF01434 Peptidase family M41 AS52_00061 PF00004 ATPase family associated with various cellular activities (AAA) AS52_00061 PF17862 AAA+ lid domain AS52_00062 PF03309 Type III pantothenate kinase AS52_00063 PF01430 Hsp33 protein AS52_00064 PF00291 Pyridoxal-phosphate dependent enzyme AS52_00065 PF00425 chorismate binding enzyme AS52_00065 PF04715 Anthranilate synthase component I, N terminal region AS52_00066 PF00117 Glutamine amidotransferase class-I AS52_00067 PF01063 Amino-transferase class IV AS52_00068 PF02152 Dihydroneopterin aldolase AS52_00069 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AS52_00070 PF01336 OB-fold nucleic acid binding domain AS52_00070 PF00152 tRNA synthetases class II (D, K and N) AS52_00074 PF17727 CtsR C-terminal dimerization domain AS52_00074 PF05848 CtsR N-terminal HTH domain AS52_00075 PF02151 UvrB/uvrC motif AS52_00076 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AS52_00077 PF00004 ATPase family associated with various cellular activities (AAA) AS52_00077 PF07724 AAA domain (Cdc48 subfamily) AS52_00077 PF17871 AAA lid domain AS52_00077 PF10431 C-terminal, D2-small domain, of ClpB protein AS52_00077 PF02861 Clp amino terminal domain, pathogenicity island component AS52_00078 PF18073 Rubredoxin metal binding domain AS52_00079 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS52_00079 PF10635 DisA bacterial checkpoint controller linker region AS52_00081 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AS52_00082 PF02542 YgbB family AS52_00083 PF00749 tRNA synthetases class I (E and Q), catalytic domain AS52_00084 PF00132 Bacterial transferase hexapeptide (six repeats) AS52_00084 PF06426 Serine acetyltransferase, N-terminal AS52_00085 PF01406 tRNA synthetases class I (C) catalytic domain AS52_00085 PF09190 DALR domain AS52_00086 PF00636 Ribonuclease III domain AS52_00087 PF00588 SpoU rRNA Methylase family AS52_00087 PF08032 RNA 2'-O ribose methyltransferase substrate binding AS52_00088 PF05991 YacP-like NYN domain AS52_00089 PF04542 Sigma-70 region 2 AS52_00089 PF08281 Sigma-70, region 4 AS52_00090 PF00471 Ribosomal protein L33 AS52_00091 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AS52_00092 PF02357 Transcription termination factor nusG AS52_00092 PF00467 KOW motif AS52_00093 PF00298 Ribosomal protein L11, RNA binding domain AS52_00093 PF03946 Ribosomal protein L11, N-terminal domain AS52_00094 PF00687 Ribosomal protein L1p/L10e family AS52_00095 PF00466 Ribosomal protein L10 AS52_00097 PF05175 Methyltransferase small domain AS52_00098 PF10385 RNA polymerase beta subunit external 1 domain AS52_00098 PF04561 RNA polymerase Rpb2, domain 2 AS52_00098 PF04560 RNA polymerase Rpb2, domain 7 AS52_00098 PF04565 RNA polymerase Rpb2, domain 3 AS52_00098 PF00562 RNA polymerase Rpb2, domain 6 AS52_00098 PF04563 RNA polymerase beta subunit AS52_00099 PF04998 RNA polymerase Rpb1, domain 5 AS52_00099 PF04983 RNA polymerase Rpb1, domain 3 AS52_00099 PF00623 RNA polymerase Rpb1, domain 2 AS52_00099 PF04997 RNA polymerase Rpb1, domain 1 AS52_00099 PF05000 RNA polymerase Rpb1, domain 4 AS52_00100 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AS52_00101 PF00164 Ribosomal protein S12/S23 AS52_00102 PF00177 Ribosomal protein S7p/S5e AS52_00103 PF03144 Elongation factor Tu domain 2 AS52_00103 PF14492 Elongation Factor G, domain II AS52_00103 PF00009 Elongation factor Tu GTP binding domain AS52_00103 PF00679 Elongation factor G C-terminus AS52_00103 PF03764 Elongation factor G, domain IV AS52_00104 PF03143 Elongation factor Tu C-terminal domain AS52_00104 PF00009 Elongation factor Tu GTP binding domain AS52_00104 PF03144 Elongation factor Tu domain 2 AS52_00105 PF00338 Ribosomal protein S10p/S20e AS52_00106 PF00297 Ribosomal protein L3 AS52_00107 PF00573 Ribosomal protein L4/L1 family AS52_00108 PF00276 Ribosomal protein L23 AS52_00109 PF00181 Ribosomal Proteins L2, RNA binding domain AS52_00109 PF03947 Ribosomal Proteins L2, C-terminal domain AS52_00110 PF00203 Ribosomal protein S19 AS52_00111 PF00237 Ribosomal protein L22p/L17e AS52_00112 PF07650 KH domain AS52_00112 PF00189 Ribosomal protein S3, C-terminal domain AS52_00113 PF00252 Ribosomal protein L16p/L10e AS52_00114 PF00831 Ribosomal L29 protein AS52_00115 PF00366 Ribosomal protein S17 AS52_00116 PF00238 Ribosomal protein L14p/L23e AS52_00117 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AS52_00117 PF00467 KOW motif AS52_00118 PF00673 ribosomal L5P family C-terminus AS52_00118 PF00281 Ribosomal protein L5 AS52_00119 PF00253 Ribosomal protein S14p/S29e AS52_00120 PF00410 Ribosomal protein S8 AS52_00121 PF00347 Ribosomal protein L6 AS52_00122 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AS52_00123 PF03719 Ribosomal protein S5, C-terminal domain AS52_00123 PF00333 Ribosomal protein S5, N-terminal domain AS52_00124 PF00327 Ribosomal protein L30p/L7e AS52_00125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AS52_00126 PF00344 SecY translocase AS52_00127 PF05191 Adenylate kinase, active site lid AS52_00128 PF00557 Metallopeptidase family M24 AS52_00129 PF01176 Translation initiation factor 1A / IF-1 AS52_00130 PF00444 Ribosomal protein L36 AS52_00131 PF00416 Ribosomal protein S13/S18 AS52_00132 PF00411 Ribosomal protein S11 AS52_00133 PF01000 RNA polymerase Rpb3/RpoA insert domain AS52_00133 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AS52_00133 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AS52_00134 PF01196 Ribosomal protein L17 AS52_00135 PF00005 ABC transporter AS52_00136 PF00005 ABC transporter AS52_00137 PF02361 Cobalt transport protein AS52_00138 PF01416 tRNA pseudouridine synthase AS52_00139 PF00572 Ribosomal protein L13 AS52_00140 PF00380 Ribosomal protein S9/S16 AS52_00142 PF01520 N-acetylmuramoyl-L-alanine amidase AS52_00143 PF10609 NUBPL iron-transfer P-loop NTPase AS52_00144 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_00144 PF03466 LysR substrate binding domain AS52_00145 PF17898 Spore germination GerD central core domain AS52_00146 PF14089 KinB-signalling pathway activation in sporulation AS52_00147 PF01522 Polysaccharide deacetylase AS52_00161 PF00491 Arginase family AS52_00163 PF08281 Sigma-70, region 4 AS52_00163 PF04542 Sigma-70 region 2 AS52_00164 PF13490 Putative zinc-finger AS52_00165 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS52_00167 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AS52_00167 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AS52_00167 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AS52_00167 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AS52_00168 PF01380 SIS domain AS52_00169 PF01709 Transcriptional regulator AS52_00170 PF08239 Bacterial SH3 domain AS52_00170 PF01520 N-acetylmuramoyl-L-alanine amidase AS52_00171 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS52_00171 PF02378 Phosphotransferase system, EIIC AS52_00171 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS52_00172 PF05043 Mga helix-turn-helix domain AS52_00172 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS52_00172 PF00874 PRD domain AS52_00172 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS52_00172 PF08279 HTH domain AS52_00173 PF08125 Mannitol dehydrogenase C-terminal domain AS52_00173 PF01232 Mannitol dehydrogenase Rossmann domain AS52_00175 PF03734 L,D-transpeptidase catalytic domain AS52_00176 PF01741 Large-conductance mechanosensitive channel, MscL AS52_00177 PF00884 Sulfatase AS52_00179 PF00005 ABC transporter AS52_00179 PF08402 TOBE domain AS52_00180 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00181 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00182 PF13416 Bacterial extracellular solute-binding protein AS52_00184 PF00486 Transcriptional regulatory protein, C terminal AS52_00184 PF00072 Response regulator receiver domain AS52_00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00185 PF00512 His Kinase A (phospho-acceptor) domain AS52_00187 PF02424 ApbE family AS52_00188 PF04205 FMN-binding domain AS52_00188 PF01794 Ferric reductase like transmembrane component AS52_00189 PF07478 D-ala D-ala ligase C-terminus AS52_00189 PF01820 D-ala D-ala ligase N-terminus AS52_00190 PF01225 Mur ligase family, catalytic domain AS52_00190 PF02875 Mur ligase family, glutamate ligase domain AS52_00190 PF08245 Mur ligase middle domain AS52_00191 PF00271 Helicase conserved C-terminal domain AS52_00191 PF00270 DEAD/DEAH box helicase AS52_00192 PF03851 UV-endonuclease UvdE AS52_00193 PF01694 Rhomboid family AS52_00194 PF01648 4'-phosphopantetheinyl transferase superfamily AS52_00196 PF00842 Alanine racemase, C-terminal domain AS52_00196 PF01168 Alanine racemase, N-terminal domain AS52_00197 PF01402 Ribbon-helix-helix protein, copG family AS52_00198 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AS52_00199 PF01740 STAS domain AS52_00199 PF08678 Rsbr N terminal AS52_00200 PF01740 STAS domain AS52_00201 PF13581 Histidine kinase-like ATPase domain AS52_00202 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AS52_00202 PF07228 Stage II sporulation protein E (SpoIIE) AS52_00203 PF01740 STAS domain AS52_00204 PF13581 Histidine kinase-like ATPase domain AS52_00205 PF04539 Sigma-70 region 3 AS52_00205 PF04545 Sigma-70, region 4 AS52_00205 PF04542 Sigma-70 region 2 AS52_00206 PF07228 Stage II sporulation protein E (SpoIIE) AS52_00207 PF16921 Tex protein YqgF-like domain AS52_00207 PF09371 Tex-like protein N-terminal domain AS52_00207 PF00575 S1 RNA binding domain AS52_00207 PF17674 HHH domain AS52_00208 PF10263 SprT-like family AS52_00208 PF17283 SprT-like zinc ribbon domain AS52_00225 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AS52_00226 PF00814 Glycoprotease family AS52_00227 PF00583 Acetyltransferase (GNAT) family AS52_00228 PF00814 Glycoprotease family AS52_00229 PF00005 ABC transporter AS52_00229 PF12848 ABC transporter AS52_00229 PF16326 ABC transporter C-terminal domain AS52_00230 PF02629 CoA binding domain AS52_00230 PF06971 Putative DNA-binding protein N-terminus AS52_00231 PF02416 mttA/Hcf106 family AS52_00232 PF00902 Sec-independent protein translocase protein (TatC) AS52_00234 PF02517 CPBP intramembrane metalloprotease AS52_00235 PF00166 Chaperonin 10 Kd subunit AS52_00236 PF00118 TCP-1/cpn60 chaperonin family AS52_00237 PF00589 Phage integrase family AS52_00237 PF02899 Phage integrase, N-terminal SAM-like domain AS52_00239 PF00145 C-5 cytosine-specific DNA methylase AS52_00241 PF00239 Resolvase, N terminal domain AS52_00241 PF02796 Helix-turn-helix domain of resolvase AS52_00252 PF17863 AAA lid domain AS52_00252 PF07726 ATPase family associated with various cellular activities (AAA) AS52_00253 PF01882 Protein of unknown function DUF58 AS52_00254 PF11992 Domain of unknown function (DUF3488) AS52_00254 PF13559 Domain of unknown function (DUF4129) AS52_00254 PF01841 Transglutaminase-like superfamily AS52_00255 PF00117 Glutamine amidotransferase class-I AS52_00255 PF02540 NAD synthase AS52_00255 PF00958 GMP synthase C terminal domain AS52_00256 PF00860 Permease family AS52_00266 PF14044 NETI protein AS52_00267 PF00731 AIR carboxylase AS52_00268 PF02222 ATP-grasp domain AS52_00268 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AS52_00269 PF10397 Adenylosuccinate lyase C-terminus AS52_00269 PF00206 Lyase AS52_00270 PF01259 SAICAR synthetase AS52_00271 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AS52_00273 PF00586 AIR synthase related protein, N-terminal domain AS52_00273 PF02769 AIR synthase related protein, C-terminal domain AS52_00273 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AS52_00274 PF00156 Phosphoribosyl transferase domain AS52_00275 PF00586 AIR synthase related protein, N-terminal domain AS52_00275 PF02769 AIR synthase related protein, C-terminal domain AS52_00276 PF00551 Formyl transferase AS52_00277 PF01808 AICARFT/IMPCHase bienzyme AS52_00277 PF02142 MGS-like domain AS52_00278 PF02843 Phosphoribosylglycinamide synthetase, C domain AS52_00278 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AS52_00278 PF02844 Phosphoribosylglycinamide synthetase, N domain AS52_00280 PF01979 Amidohydrolase family AS52_00280 PF13382 Adenine deaminase C-terminal domain AS52_00281 PF01371 Trp repressor protein AS52_00282 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS52_00282 PF03129 Anticodon binding domain AS52_00283 PF01884 PcrB family AS52_00284 PF00580 UvrD/REP helicase N-terminal domain AS52_00284 PF13361 UvrD-like helicase C-terminal domain AS52_00285 PF03120 NAD-dependent DNA ligase OB-fold domain AS52_00285 PF12826 Helix-hairpin-helix motif AS52_00285 PF01653 NAD-dependent DNA ligase adenylation domain AS52_00285 PF00533 BRCA1 C Terminus (BRCT) domain AS52_00285 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AS52_00286 PF07537 CamS sex pheromone cAM373 precursor AS52_00288 PF02686 Glu-tRNAGln amidotransferase C subunit AS52_00289 PF01425 Amidase AS52_00290 PF02934 GatB/GatE catalytic domain AS52_00290 PF02637 GatB domain AS52_00291 PF00781 Diacylglycerol kinase catalytic domain AS52_00292 PF02475 Met-10+ like-protein AS52_00292 PF01938 TRAM domain AS52_00292 PF05958 tRNA (Uracil-5-)-methyltransferase AS52_00294 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_00294 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_00296 PF12728 Helix-turn-helix domain AS52_00299 PF00989 PAS fold AS52_00299 PF00512 His Kinase A (phospho-acceptor) domain AS52_00299 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00300 PF00557 Metallopeptidase family M24 AS52_00301 PF10282 Lactonase, 7-bladed beta-propeller AS52_00302 PF03060 Nitronate monooxygenase AS52_00303 PF06445 GyrI-like small molecule binding domain AS52_00303 PF13411 MerR HTH family regulatory protein AS52_00304 PF07690 Major Facilitator Superfamily AS52_00306 PF13539 D-alanyl-D-alanine carboxypeptidase AS52_00307 PF00005 ABC transporter AS52_00308 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS52_00309 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00310 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00311 PF00324 Amino acid permease AS52_00312 PF04286 Protein of unknown function (DUF445) AS52_00313 PF03413 Peptidase propeptide and YPEB domain AS52_00314 PF03413 Peptidase propeptide and YPEB domain AS52_00315 PF00512 His Kinase A (phospho-acceptor) domain AS52_00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00315 PF00672 HAMP domain AS52_00316 PF00486 Transcriptional regulatory protein, C terminal AS52_00316 PF00072 Response regulator receiver domain AS52_00317 PF01569 PAP2 superfamily AS52_00318 PF02566 OsmC-like protein AS52_00319 PF03824 High-affinity nickel-transport protein AS52_00320 PF01546 Peptidase family M20/M25/M40 AS52_00320 PF07687 Peptidase dimerisation domain AS52_00321 PF07681 DoxX AS52_00322 PF01965 DJ-1/PfpI family AS52_00323 PF12867 DinB superfamily AS52_00325 PF01235 Sodium:alanine symporter family AS52_00326 PF06081 Aromatic acid exporter family member 1 AS52_00328 PF02915 Rubrerythrin AS52_00329 PF01544 CorA-like Mg2+ transporter protein AS52_00330 PF17203 Single cache domain 3 AS52_00330 PF00989 PAS fold AS52_00330 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS52_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00331 PF00072 Response regulator receiver domain AS52_00334 PF00512 His Kinase A (phospho-acceptor) domain AS52_00334 PF00989 PAS fold AS52_00334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00334 PF08447 PAS fold AS52_00335 PF00270 DEAD/DEAH box helicase AS52_00335 PF00271 Helicase conserved C-terminal domain AS52_00337 PF04740 LXG domain of WXG superfamily AS52_00337 PF14436 Bacterial EndoU nuclease AS52_00339 PF06013 Proteins of 100 residues with WXG AS52_00340 PF08817 WXG100 protein secretion system (Wss), protein YukD AS52_00341 PF10140 WXG100 protein secretion system (Wss), protein YukC AS52_00342 PF12538 DNA transporter AS52_00342 PF01580 FtsK/SpoIIIE family AS52_00344 PF17355 Family of unknown function (DUF5383) AS52_00346 PF04231 Endonuclease I AS52_00347 PF01373 Glycosyl hydrolase family 14 AS52_00347 PF00686 Starch binding domain AS52_00348 PF01625 Peptide methionine sulfoxide reductase AS52_00351 PF00005 ABC transporter AS52_00351 PF12848 ABC transporter AS52_00352 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS52_00353 PF02898 Nitric oxide synthase, oxygenase domain AS52_00354 PF11121 Protein of unknown function (DUF2639) AS52_00355 PF02082 Transcriptional regulator AS52_00356 PF00175 Oxidoreductase NAD-binding domain AS52_00356 PF00042 Globin AS52_00356 PF00970 Oxidoreductase FAD-binding domain AS52_00357 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AS52_00358 PF01965 DJ-1/PfpI family AS52_00359 PF00188 Cysteine-rich secretory protein family AS52_00360 PF13382 Adenine deaminase C-terminal domain AS52_00360 PF01979 Amidohydrolase family AS52_00361 PF06569 Protein of unknown function (DUF1128) AS52_00362 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS52_00364 PF03631 Virulence factor BrkB AS52_00368 PF01022 Bacterial regulatory protein, arsR family AS52_00369 PF01545 Cation efflux family AS52_00369 PF16916 Dimerisation domain of Zinc Transporter AS52_00370 PF07690 Major Facilitator Superfamily AS52_00372 PF05870 Phenolic acid decarboxylase (PAD) AS52_00374 PF16242 Pyridoxamine 5'-phosphate oxidase like AS52_00375 PF01699 Sodium/calcium exchanger protein AS52_00376 PF14167 YfkD-like protein AS52_00377 PF08756 YfkB-like domain AS52_00377 PF04055 Radical SAM superfamily AS52_00379 PF05681 Fumarate hydratase (Fumerase) AS52_00379 PF05683 Fumarase C-terminus AS52_00380 PF01522 Polysaccharide deacetylase AS52_00381 PF05958 tRNA (Uracil-5-)-methyltransferase AS52_00381 PF01938 TRAM domain AS52_00382 PF08031 Berberine and berberine like AS52_00382 PF01565 FAD binding domain AS52_00383 PF00324 Amino acid permease AS52_00384 PF13426 PAS domain AS52_00384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00384 PF13188 PAS domain AS52_00384 PF00512 His Kinase A (phospho-acceptor) domain AS52_00384 PF00989 PAS fold AS52_00387 PF01979 Amidohydrolase family AS52_00388 PF01370 NAD dependent epimerase/dehydratase family AS52_00388 PF08338 Domain of unknown function (DUF1731) AS52_00389 PF02631 RecX family AS52_00390 PF00106 short chain dehydrogenase AS52_00391 PF08838 Protein of unknown function (DUF1811) AS52_00392 PF08176 Small acid-soluble spore protein K family AS52_00394 PF04307 LexA-binding, inner membrane-associated putative hydrolase AS52_00395 PF00730 HhH-GPD superfamily base excision DNA repair protein AS52_00395 PF14815 NUDIX domain AS52_00398 PF04259 Small, acid-soluble spore protein, gamma-type AS52_00399 PF14182 YgaB-like protein AS52_00400 PF04167 Protein of unknown function (DUF402) AS52_00401 PF00664 ABC transporter transmembrane region AS52_00401 PF00005 ABC transporter AS52_00402 PF06081 Aromatic acid exporter family member 1 AS52_00403 PF00202 Aminotransferase class-III AS52_00404 PF00005 ABC transporter AS52_00407 PF07885 Ion channel AS52_00408 PF00578 AhpC/TSA family AS52_00409 PF01475 Ferric uptake regulator family AS52_00410 PF11023 Zinc-ribbon containing domain AS52_00411 PF14540 Nucleotidyltransferase-like AS52_00411 PF18576 Helix-turn-helix domain AS52_00433 PF08331 Domain of unknown function (DUF1730) AS52_00434 PF12671 Putative amidase domain AS52_00435 PF00588 SpoU rRNA Methylase family AS52_00437 PF08298 PrkA AAA domain AS52_00437 PF06798 PrkA serine protein kinase C-terminal domain AS52_00438 PF04285 Protein of unknown function (DUF444) AS52_00440 PF01545 Cation efflux family AS52_00440 PF16916 Dimerisation domain of Zinc Transporter AS52_00441 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_00445 PF01964 Radical SAM ThiC family AS52_00445 PF13667 ThiC-associated domain AS52_00447 PF02673 Bacitracin resistance protein BacA AS52_00448 PF00375 Sodium:dicarboxylate symporter family AS52_00450 PF09335 SNARE associated Golgi protein AS52_00451 PF12787 EcsC protein family AS52_00452 PF00324 Amino acid permease AS52_00454 PF16874 Glycosyl hydrolase family 36 C-terminal domain AS52_00454 PF16875 Glycosyl hydrolase family 36 N-terminal domain AS52_00456 PF04309 Glycerol-3-phosphate responsive antiterminator AS52_00458 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00459 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00460 PF13416 Bacterial extracellular solute-binding protein AS52_00461 PF03009 Glycerophosphoryl diester phosphodiesterase family AS52_00464 PF13378 Enolase C-terminal domain-like AS52_00464 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS52_00465 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain AS52_00465 PF00877 NlpC/P60 family AS52_00472 PF10503 Esterase PHB depolymerase AS52_00473 PF01476 LysM domain AS52_00473 PF06725 3D domain AS52_00474 PF02557 D-alanyl-D-alanine carboxypeptidase AS52_00476 PF08239 Bacterial SH3 domain AS52_00478 PF00583 Acetyltransferase (GNAT) family AS52_00480 PF13091 PLD-like domain AS52_00480 PF13396 Phospholipase_D-nuclease N-terminal AS52_00484 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_00486 PF00356 Bacterial regulatory proteins, lacI family AS52_00487 PF07690 Major Facilitator Superfamily AS52_00488 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS52_00488 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS52_00489 PF00294 pfkB family carbohydrate kinase AS52_00490 PF00171 Aldehyde dehydrogenase family AS52_00491 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_00491 PF00205 Thiamine pyrophosphate enzyme, central domain AS52_00491 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS52_00492 PF01261 Xylose isomerase-like TIM barrel AS52_00493 PF00356 Bacterial regulatory proteins, lacI family AS52_00494 PF04962 KduI/IolB family AS52_00497 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_00497 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_00498 PF01037 Lrp/AsnC ligand binding domain AS52_00503 PF07690 Major Facilitator Superfamily AS52_00504 PF00849 RNA pseudouridylate synthase AS52_00504 PF01479 S4 domain AS52_00507 PF14552 Tautomerase enzyme AS52_00509 PF12327 FtsZ family, C-terminal domain AS52_00509 PF00091 Tubulin/FtsZ family, GTPase domain AS52_00510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS52_00513 PF10787 Uncharacterised protein from bacillus cereus group AS52_00515 PF01026 TatD related DNase AS52_00516 PF00892 EamA-like transporter family AS52_00518 PF01594 AI-2E family transporter AS52_00521 PF08240 Alcohol dehydrogenase GroES-like domain AS52_00521 PF00107 Zinc-binding dehydrogenase AS52_00522 PF02652 L-lactate permease AS52_00523 PF00056 lactate/malate dehydrogenase, NAD binding domain AS52_00523 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS52_00524 PF16916 Dimerisation domain of Zinc Transporter AS52_00524 PF01545 Cation efflux family AS52_00525 PF02743 Cache domain AS52_00525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS52_00525 PF00672 HAMP domain AS52_00526 PF01479 S4 domain AS52_00526 PF00849 RNA pseudouridylate synthase AS52_00528 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS52_00528 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS52_00530 PF03734 L,D-transpeptidase catalytic domain AS52_00530 PF17969 L,D-transpeptidase C-terminal domain AS52_00531 PF00583 Acetyltransferase (GNAT) family AS52_00531 PF00795 Carbon-nitrogen hydrolase AS52_00532 PF04309 Glycerol-3-phosphate responsive antiterminator AS52_00533 PF00230 Major intrinsic protein AS52_00534 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS52_00534 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS52_00535 PF01266 FAD dependent oxidoreductase AS52_00535 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AS52_00536 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AS52_00536 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AS52_00536 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AS52_00536 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AS52_00537 PF02632 BioY family AS52_00538 PF14148 YhdB-like protein AS52_00539 PF04293 SpoVR like protein AS52_00541 PF02082 Transcriptional regulator AS52_00542 PF00107 Zinc-binding dehydrogenase AS52_00542 PF08240 Alcohol dehydrogenase GroES-like domain AS52_00544 PF00005 ABC transporter AS52_00545 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00546 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS52_00547 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AS52_00548 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AS52_00550 PF02581 Thiamine monophosphate synthase AS52_00551 PF01266 FAD dependent oxidoreductase AS52_00553 PF05690 Thiazole biosynthesis protein ThiG AS52_00554 PF00899 ThiF family AS52_00555 PF08543 Phosphomethylpyrimidine kinase AS52_00556 PF00300 Histidine phosphatase superfamily (branch 1) AS52_00558 PF13460 NAD(P)H-binding AS52_00559 PF01595 Cyclin M transmembrane N-terminal domain AS52_00559 PF03471 Transporter associated domain AS52_00559 PF00571 CBS domain AS52_00560 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_00562 PF03459 TOBE domain AS52_00562 PF17912 MalK OB fold domain AS52_00562 PF00005 ABC transporter AS52_00563 PF13556 PucR C-terminal helix-turn-helix domain AS52_00566 PF14398 YheC/D like ATP-grasp AS52_00567 PF14398 YheC/D like ATP-grasp AS52_00569 PF06133 Control of competence regulator ComK, YlbF/YmcA AS52_00571 PF04055 Radical SAM superfamily AS52_00572 PF13193 AMP-binding enzyme C-terminal domain AS52_00572 PF00501 AMP-binding enzyme AS52_00573 PF00378 Enoyl-CoA hydratase/isomerase AS52_00574 PF00216 Bacterial DNA-binding protein AS52_00576 PF00005 ABC transporter AS52_00576 PF13732 Domain of unknown function (DUF4162) AS52_00578 PF01966 HD domain AS52_00578 PF01336 OB-fold nucleic acid binding domain AS52_00579 PF14147 Sporulation protein YhaL AS52_00580 PF05698 Bacterial trigger factor protein (TF) C-terminus AS52_00584 PF01047 MarR family AS52_00586 PF17099 Tryptophan transporter TrpP AS52_00587 PF00266 Aminotransferase class-V AS52_00588 PF03551 Transcriptional regulator PadR-like family AS52_00588 PF10400 Virulence activator alpha C-term AS52_00589 PF13673 Acetyltransferase (GNAT) domain AS52_00590 PF01757 Acyltransferase family AS52_00591 PF01230 HIT domain AS52_00592 PF00005 ABC transporter AS52_00593 PF05975 Bacterial ABC transporter protein EcsB AS52_00594 PF12787 EcsC protein family AS52_00595 PF01546 Peptidase family M20/M25/M40 AS52_00595 PF07687 Peptidase dimerisation domain AS52_00596 PF01569 PAP2 superfamily AS52_00598 PF03992 Antibiotic biosynthesis monooxygenase AS52_00599 PF00912 Transglycosylase AS52_00599 PF00905 Penicillin binding protein transpeptidase domain AS52_00600 PF01208 Uroporphyrinogen decarboxylase (URO-D) AS52_00603 PF17932 Tetracyclin repressor-like, C-terminal domain AS52_00603 PF00440 Bacterial regulatory proteins, tetR family AS52_00605 PF01547 Bacterial extracellular solute-binding protein AS52_00606 PF00672 HAMP domain AS52_00606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00606 PF02743 Cache domain AS52_00606 PF06580 Histidine kinase AS52_00609 PF12706 Beta-lactamase superfamily domain AS52_00610 PF10437 Bacterial lipoate protein ligase C-terminus AS52_00610 PF03099 Biotin/lipoate A/B protein ligase family AS52_00611 PF13193 AMP-binding enzyme C-terminal domain AS52_00611 PF00501 AMP-binding enzyme AS52_00612 PF00378 Enoyl-CoA hydratase/isomerase AS52_00635 PF16491 CAAX prenyl protease N-terminal, five membrane helices AS52_00635 PF01435 Peptidase family M48 AS52_00636 PF00463 Isocitrate lyase family AS52_00637 PF08858 IDEAL domain AS52_00638 PF07676 WD40-like Beta Propeller Repeat AS52_00638 PF00326 Prolyl oligopeptidase family AS52_00639 PF09335 SNARE associated Golgi protein AS52_00641 PF12705 PD-(D/E)XK nuclease superfamily AS52_00642 PF13361 UvrD-like helicase C-terminal domain AS52_00642 PF12705 PD-(D/E)XK nuclease superfamily AS52_00642 PF00580 UvrD/REP helicase N-terminal domain AS52_00643 PF00149 Calcineurin-like phosphoesterase AS52_00643 PF12320 Type 5 capsule protein repressor C-terminal domain AS52_00644 PF13476 AAA domain AS52_00646 PF10676 Spore germination protein gerPA/gerPF AS52_00649 PF10737 Spore germination protein GerPC AS52_00650 PF10803 Spore germination GerPB AS52_00651 PF10676 Spore germination protein gerPA/gerPF AS52_00652 PF04235 Protein of unknown function (DUF418) AS52_00653 PF07457 Protein of unknown function (DUF1516) AS52_00655 PF13537 Glutamine amidotransferase domain AS52_00655 PF00733 Asparagine synthase AS52_00656 PF01593 Flavin containing amine oxidoreductase AS52_00659 PF00543 Nitrogen regulatory protein P-II AS52_00660 PF00909 Ammonium Transporter Family AS52_00661 PF01373 Glycosyl hydrolase family 14 AS52_00661 PF03423 Carbohydrate binding domain (family 25) AS52_00661 PF00128 Alpha amylase, catalytic domain AS52_00662 PF00356 Bacterial regulatory proteins, lacI family AS52_00662 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS52_00663 PF00171 Aldehyde dehydrogenase family AS52_00664 PF00202 Aminotransferase class-III AS52_00665 PF01546 Peptidase family M20/M25/M40 AS52_00666 PF00324 Amino acid permease AS52_00667 PF00158 Sigma-54 interaction domain AS52_00667 PF02954 Bacterial regulatory protein, Fis family AS52_00667 PF13426 PAS domain AS52_00669 PF04461 Protein of unknown function (DUF520) AS52_00670 PF13509 S1 domain AS52_00670 PF17783 CvfB-like winged helix domain AS52_00672 PF02645 Uncharacterised protein, DegV family COG1307 AS52_00673 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_00673 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_00677 PF01883 Iron-sulfur cluster assembly protein AS52_00678 PF00027 Cyclic nucleotide-binding domain AS52_00678 PF00325 Bacterial regulatory proteins, crp family AS52_00679 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS52_00679 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS52_00680 PF01960 ArgJ family AS52_00681 PF00696 Amino acid kinase family AS52_00682 PF00202 Aminotransferase class-III AS52_00683 PF00117 Glutamine amidotransferase class-I AS52_00683 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AS52_00684 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS52_00684 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AS52_00685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AS52_00685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AS52_00687 PF14168 YjzC-like protein AS52_00688 PF17871 AAA lid domain AS52_00688 PF02861 Clp amino terminal domain, pathogenicity island component AS52_00688 PF00004 ATPase family associated with various cellular activities (AAA) AS52_00688 PF10431 C-terminal, D2-small domain, of ClpB protein AS52_00688 PF07724 AAA domain (Cdc48 subfamily) AS52_00690 PF12833 Helix-turn-helix domain AS52_00691 PF08544 GHMP kinases C terminal AS52_00691 PF10509 Galactokinase galactose-binding signature AS52_00691 PF00288 GHMP kinases N terminal domain AS52_00692 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AS52_00692 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AS52_00693 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS52_00693 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS52_00697 PF10815 ComZ AS52_00699 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS52_00699 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS52_00700 PF02801 Beta-ketoacyl synthase, C-terminal domain AS52_00700 PF00109 Beta-ketoacyl synthase, N-terminal domain AS52_00701 PF10026 Predicted Zn-dependent protease (DUF2268) AS52_00702 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_00702 PF00005 ABC transporter AS52_00703 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_00703 PF00005 ABC transporter AS52_00704 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS52_00705 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00706 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00708 PF12227 Protein of unknown function (DUF3603) AS52_00709 PF00579 tRNA synthetases class I (W and Y) AS52_00710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS52_00711 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00712 PF12911 N-terminal TM domain of oligopeptide transport permease C AS52_00712 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00713 PF00005 ABC transporter AS52_00713 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_00714 PF00005 ABC transporter AS52_00714 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_00715 PF13508 Acetyltransferase (GNAT) domain AS52_00716 PF00324 Amino acid permease AS52_00717 PF13520 Amino acid permease AS52_00718 PF03960 ArsC family AS52_00719 PF03466 LysR substrate binding domain AS52_00719 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_00722 PF03741 Integral membrane protein TerC family AS52_00723 PF05389 Negative regulator of genetic competence (MecA) AS52_00724 PF13396 Phospholipase_D-nuclease N-terminal AS52_00724 PF13091 PLD-like domain AS52_00726 PF08439 Oligopeptidase F AS52_00726 PF01432 Peptidase family M3 AS52_00729 PF01152 Bacterial-like globin AS52_00730 PF01464 Transglycosylase SLT domain AS52_00731 PF01928 CYTH domain AS52_00733 PF04607 Region found in RelA / SpoT proteins AS52_00734 PF01513 ATP-NAD kinase AS52_00735 PF00849 RNA pseudouridylate synthase AS52_00736 PF00149 Calcineurin-like phosphoesterase AS52_00737 PF01769 Divalent cation transporter AS52_00737 PF00571 CBS domain AS52_00737 PF03448 MgtE intracellular N domain AS52_00738 PF00999 Sodium/hydrogen exchanger family AS52_00738 PF02254 TrkA-N domain AS52_00738 PF02080 TrkA-C domain AS52_00740 PF07098 Protein of unknown function (DUF1360) AS52_00747 PF14069 Stage VI sporulation protein F AS52_00749 PF13361 UvrD-like helicase C-terminal domain AS52_00749 PF00580 UvrD/REP helicase N-terminal domain AS52_00751 PF04239 Protein of unknown function (DUF421) AS52_00752 PF13673 Acetyltransferase (GNAT) domain AS52_00754 PF00756 Putative esterase AS52_00756 PF04608 Phosphatidylglycerophosphatase A AS52_00758 PF01380 SIS domain AS52_00758 PF01418 Helix-turn-helix domain, rpiR family AS52_00759 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS52_00759 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS52_00760 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS52_00760 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS52_00761 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AS52_00762 PF02447 GntP family permease AS52_00765 PF01037 Lrp/AsnC ligand binding domain AS52_00766 PF00797 N-acetyltransferase AS52_00770 PF00005 ABC transporter AS52_00773 PF03880 DbpA RNA binding domain AS52_00773 PF00270 DEAD/DEAH box helicase AS52_00773 PF00271 Helicase conserved C-terminal domain AS52_00774 PF03932 CutC family AS52_00775 PF00324 Amino acid permease AS52_00777 PF00753 Metallo-beta-lactamase superfamily AS52_00778 PF13305 Tetracyclin repressor-like, C-terminal domain AS52_00778 PF00440 Bacterial regulatory proteins, tetR family AS52_00779 PF00874 PRD domain AS52_00779 PF05043 Mga helix-turn-helix domain AS52_00779 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS52_00779 PF08279 HTH domain AS52_00780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS52_00781 PF02378 Phosphotransferase system, EIIC AS52_00782 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS52_00783 PF11975 Family 4 glycosyl hydrolase C-terminal domain AS52_00783 PF02056 Family 4 glycosyl hydrolase AS52_00784 PF00072 Response regulator receiver domain AS52_00784 PF02954 Bacterial regulatory protein, Fis family AS52_00784 PF00158 Sigma-54 interaction domain AS52_00786 PF01425 Amidase AS52_00787 PF06580 Histidine kinase AS52_00787 PF07694 5TMR of 5TMR-LYT AS52_00787 PF13492 GAF domain AS52_00787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00788 PF00072 Response regulator receiver domain AS52_00788 PF04397 LytTr DNA-binding domain AS52_00789 PF03788 LrgA family AS52_00790 PF04172 LrgB-like family AS52_00793 PF18267 Rubredoxin NAD+ reductase C-terminal domain AS52_00793 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AS52_00793 PF04324 BFD-like [2Fe-2S] binding domain AS52_00793 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_00793 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS52_00794 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AS52_00794 PF01568 Molydopterin dinucleotide binding domain AS52_00794 PF00384 Molybdopterin oxidoreductase AS52_00795 PF07690 Major Facilitator Superfamily AS52_00796 PF03306 Alpha-acetolactate decarboxylase AS52_00797 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS52_00797 PF00205 Thiamine pyrophosphate enzyme, central domain AS52_00797 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_00799 PF09962 Uncharacterized conserved protein (DUF2196) AS52_00801 PF01638 HxlR-like helix-turn-helix AS52_00802 PF07690 Major Facilitator Superfamily AS52_00803 PF00296 Luciferase-like monooxygenase AS52_00804 PF00698 Acyl transferase domain AS52_00804 PF00550 Phosphopantetheine attachment site AS52_00804 PF08659 KR domain AS52_00804 PF16197 Ketoacyl-synthetase C-terminal extension AS52_00804 PF00109 Beta-ketoacyl synthase, N-terminal domain AS52_00804 PF02801 Beta-ketoacyl synthase, C-terminal domain AS52_00805 PF16957 Malonate decarboxylase, alpha subunit, transporter AS52_00806 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AS52_00807 PF06857 Malonate decarboxylase delta subunit (MdcD) AS52_00808 PF01039 Carboxyl transferase domain AS52_00809 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AS52_00810 PF08664 YcbB domain AS52_00810 PF00072 Response regulator receiver domain AS52_00811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00812 PF04960 Glutaminase AS52_00813 PF01235 Sodium:alanine symporter family AS52_00814 PF00474 Sodium:solute symporter family AS52_00817 PF13520 Amino acid permease AS52_00819 PF03061 Thioesterase superfamily AS52_00820 PF00311 Phosphoenolpyruvate carboxylase AS52_00822 PF00355 Rieske [2Fe-2S] domain AS52_00823 PF03649 Uncharacterised protein family (UPF0014) AS52_00824 PF00005 ABC transporter AS52_00825 PF01053 Cys/Met metabolism PLP-dependent enzyme AS52_00826 PF04893 Yip1 domain AS52_00827 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AS52_00828 PF00005 ABC transporter AS52_00829 PF12704 MacB-like periplasmic core domain AS52_00829 PF02687 FtsX-like permease family AS52_00831 PF00809 Pterin binding enzyme AS52_00834 PF01773 Na+ dependent nucleoside transporter N-terminus AS52_00834 PF07662 Na+ dependent nucleoside transporter C-terminus AS52_00835 PF00324 Amino acid permease AS52_00836 PF02632 BioY family AS52_00838 PF00202 Aminotransferase class-III AS52_00840 PF03741 Integral membrane protein TerC family AS52_00841 PF00375 Sodium:dicarboxylate symporter family AS52_00842 PF03480 Bacterial extracellular solute-binding protein, family 7 AS52_00843 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS52_00843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00843 PF17203 Single cache domain 3 AS52_00844 PF04703 FaeA-like protein AS52_00844 PF00072 Response regulator receiver domain AS52_00845 PF06800 Sugar transport protein AS52_00850 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS52_00850 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS52_00852 PF01522 Polysaccharide deacetylase AS52_00853 PF00158 Sigma-54 interaction domain AS52_00854 PF08240 Alcohol dehydrogenase GroES-like domain AS52_00854 PF00107 Zinc-binding dehydrogenase AS52_00855 PF00795 Carbon-nitrogen hydrolase AS52_00856 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AS52_00859 PF01381 Helix-turn-helix AS52_00861 PF00884 Sulfatase AS52_00864 PF00155 Aminotransferase class I and II AS52_00864 PF00392 Bacterial regulatory proteins, gntR family AS52_00865 PF02574 Homocysteine S-methyltransferase AS52_00866 PF01557 Fumarylacetoacetate (FAA) hydrolase family AS52_00869 PF03600 Citrate transporter AS52_00870 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS52_00870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00871 PF12431 Transcriptional regulator AS52_00871 PF08279 HTH domain AS52_00871 PF00072 Response regulator receiver domain AS52_00872 PF03401 Tripartite tricarboxylate transporter family receptor AS52_00873 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_00873 PF03466 LysR substrate binding domain AS52_00874 PF05145 Transition state regulatory protein AbrB AS52_00875 PF08241 Methyltransferase domain AS52_00876 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00877 PF00571 CBS domain AS52_00877 PF00005 ABC transporter AS52_00878 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AS52_00879 PF17934 Tetracyclin repressor-like, C-terminal domain AS52_00879 PF00440 Bacterial regulatory proteins, tetR family AS52_00881 PF00202 Aminotransferase class-III AS52_00882 PF00491 Arginase family AS52_00883 PF00324 Amino acid permease AS52_00884 PF13419 Haloacid dehalogenase-like hydrolase AS52_00885 PF00296 Luciferase-like monooxygenase AS52_00886 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AS52_00886 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_00887 PF00296 Luciferase-like monooxygenase AS52_00888 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AS52_00888 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_00889 PF01497 Periplasmic binding protein AS52_00890 PF01032 FecCD transport family AS52_00891 PF01032 FecCD transport family AS52_00893 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AS52_00893 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AS52_00893 PF06827 Zinc finger found in FPG and IleRS AS52_00896 PF01380 SIS domain AS52_00897 PF01418 Helix-turn-helix domain, rpiR family AS52_00897 PF01380 SIS domain AS52_00898 PF00367 phosphotransferase system, EIIB AS52_00898 PF02378 Phosphotransferase system, EIIC AS52_00900 PF00356 Bacterial regulatory proteins, lacI family AS52_00900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS52_00901 PF00701 Dihydrodipicolinate synthetase family AS52_00902 PF07690 Major Facilitator Superfamily AS52_00903 PF01546 Peptidase family M20/M25/M40 AS52_00903 PF07687 Peptidase dimerisation domain AS52_00904 PF03070 TENA/THI-4/PQQC family AS52_00905 PF00005 ABC transporter AS52_00906 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00907 PF09084 NMT1/THI5 like AS52_00909 PF01380 SIS domain AS52_00910 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AS52_00911 PF01638 HxlR-like helix-turn-helix AS52_00916 PF07670 Nucleoside recognition AS52_00916 PF07664 Ferrous iron transport protein B C terminus AS52_00916 PF17910 FeoB cytosolic helical domain AS52_00916 PF02421 Ferrous iron transport protein B AS52_00920 PF00398 Ribosomal RNA adenine dimethylase AS52_00921 PF04552 Sigma-54, DNA binding domain AS52_00921 PF04963 Sigma-54 factor, core binding domain AS52_00921 PF00309 Sigma-54 factor, Activator interacting domain (AID) AS52_00922 PF01638 HxlR-like helix-turn-helix AS52_00923 PF14765 Polyketide synthase dehydratase AS52_00923 PF16197 Ketoacyl-synthetase C-terminal extension AS52_00923 PF00109 Beta-ketoacyl synthase, N-terminal domain AS52_00923 PF00550 Phosphopantetheine attachment site AS52_00923 PF08659 KR domain AS52_00923 PF09277 Erythronolide synthase, docking AS52_00923 PF02801 Beta-ketoacyl synthase, C-terminal domain AS52_00923 PF00698 Acyl transferase domain AS52_00923 PF08240 Alcohol dehydrogenase GroES-like domain AS52_00923 PF08990 Erythronolide synthase docking AS52_00924 PF00005 ABC transporter AS52_00924 PF00664 ABC transporter transmembrane region AS52_00925 PF00664 ABC transporter transmembrane region AS52_00925 PF00005 ABC transporter AS52_00927 PF00474 Sodium:solute symporter family AS52_00928 PF04341 Protein of unknown function, DUF485 AS52_00930 PF01614 Bacterial transcriptional regulator AS52_00930 PF09339 IclR helix-turn-helix domain AS52_00931 PF00248 Aldo/keto reductase family AS52_00932 PF00106 short chain dehydrogenase AS52_00933 PF01047 MarR family AS52_00935 PF07690 Major Facilitator Superfamily AS52_00936 PF03358 NADPH-dependent FMN reductase AS52_00939 PF00356 Bacterial regulatory proteins, lacI family AS52_00940 PF00294 pfkB family carbohydrate kinase AS52_00941 PF05025 RbsD / FucU transport protein family AS52_00942 PF00005 ABC transporter AS52_00943 PF02653 Branched-chain amino acid transport system / permease component AS52_00944 PF13407 Periplasmic binding protein domain AS52_00945 PF06725 3D domain AS52_00945 PF01476 LysM domain AS52_00946 PF01613 Flavin reductase like domain AS52_00947 PF01547 Bacterial extracellular solute-binding protein AS52_00948 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00949 PF00528 Binding-protein-dependent transport system inner membrane component AS52_00952 PF00990 Diguanylate cyclase, GGDEF domain AS52_00952 PF00072 Response regulator receiver domain AS52_00954 PF00535 Glycosyl transferase family 2 AS52_00956 PF00072 Response regulator receiver domain AS52_00956 PF00486 Transcriptional regulatory protein, C terminal AS52_00957 PF00512 His Kinase A (phospho-acceptor) domain AS52_00957 PF00672 HAMP domain AS52_00957 PF13426 PAS domain AS52_00957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_00958 PF09350 Domain of unknown function (DUF1992) AS52_00960 PF00300 Histidine phosphatase superfamily (branch 1) AS52_00965 PF01979 Amidohydrolase family AS52_00966 PF00860 Permease family AS52_00967 PF01202 Shikimate kinase AS52_00969 PF02378 Phosphotransferase system, EIIC AS52_00969 PF00367 phosphotransferase system, EIIB AS52_00970 PF16657 Maltogenic Amylase, C-terminal domain AS52_00970 PF00128 Alpha amylase, catalytic domain AS52_00971 PF00392 Bacterial regulatory proteins, gntR family AS52_00971 PF07702 UTRA domain AS52_00972 PF02682 Carboxyltransferase domain, subdomain C and D AS52_00973 PF02626 Carboxyltransferase domain, subdomain A and B AS52_00974 PF03746 LamB/YcsF family AS52_00975 PF01566 Natural resistance-associated macrophage protein AS52_00976 PF03006 Haemolysin-III related AS52_00979 PF00881 Nitroreductase family AS52_00980 PF01594 AI-2E family transporter AS52_00982 PF08240 Alcohol dehydrogenase GroES-like domain AS52_00982 PF00107 Zinc-binding dehydrogenase AS52_00984 PF01425 Amidase AS52_00985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS52_00985 PF00289 Biotin carboxylase, N-terminal domain AS52_00985 PF02785 Biotin carboxylase C-terminal domain AS52_00988 PF00324 Amino acid permease AS52_00989 PF07969 Amidohydrolase family AS52_00990 PF00313 'Cold-shock' DNA-binding domain AS52_00991 PF13460 NAD(P)H-binding AS52_00992 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS52_00992 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS52_00993 PF10417 C-terminal domain of 1-Cys peroxiredoxin AS52_00993 PF00578 AhpC/TSA family AS52_00994 PF00578 AhpC/TSA family AS52_00998 PF00990 Diguanylate cyclase, GGDEF domain AS52_00998 PF01590 GAF domain AS52_00998 PF00563 EAL domain AS52_00998 PF00360 Phytochrome region AS52_00999 PF02416 mttA/Hcf106 family AS52_01000 PF00893 Small Multidrug Resistance protein AS52_01001 PF00893 Small Multidrug Resistance protein AS52_01004 PF08245 Mur ligase middle domain AS52_01005 PF14102 Capsule biosynthesis CapC AS52_01006 PF09587 Bacterial capsule synthesis protein PGA_cap AS52_01012 PF13419 Haloacid dehalogenase-like hydrolase AS52_01015 PF02638 Glycosyl hydrolase-like 10 AS52_01016 PF01380 SIS domain AS52_01016 PF01418 Helix-turn-helix domain, rpiR family AS52_01018 PF02378 Phosphotransferase system, EIIC AS52_01020 PF02056 Family 4 glycosyl hydrolase AS52_01020 PF11975 Family 4 glycosyl hydrolase C-terminal domain AS52_01021 PF03702 Anhydro-N-acetylmuramic acid kinase AS52_01022 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS52_01024 PF01869 BadF/BadG/BcrA/BcrD ATPase family AS52_01025 PF01380 SIS domain AS52_01027 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AS52_01030 PF03734 L,D-transpeptidase catalytic domain AS52_01031 PF13649 Methyltransferase domain AS52_01032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_01032 PF03466 LysR substrate binding domain AS52_01034 PF00248 Aldo/keto reductase family AS52_01037 PF01425 Amidase AS52_01040 PF16363 GDP-mannose 4,6 dehydratase AS52_01053 PF00563 EAL domain AS52_01053 PF17154 Gammaproteobacterial periplasmic sensor domain AS52_01053 PF00672 HAMP domain AS52_01053 PF00990 Diguanylate cyclase, GGDEF domain AS52_01054 PF03707 Bacterial signalling protein N terminal repeat AS52_01054 PF00563 EAL domain AS52_01054 PF00990 Diguanylate cyclase, GGDEF domain AS52_01055 PF01638 HxlR-like helix-turn-helix AS52_01056 PF06800 Sugar transport protein AS52_01058 PF01758 Sodium Bile acid symporter family AS52_01059 PF11755 Protein of unknown function (DUF3311) AS52_01060 PF00474 Sodium:solute symporter family AS52_01062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01063 PF00072 Response regulator receiver domain AS52_01063 PF08664 YcbB domain AS52_01064 PF00375 Sodium:dicarboxylate symporter family AS52_01066 PF00877 NlpC/P60 family AS52_01066 PF01476 LysM domain AS52_01068 PF08486 Stage II sporulation protein AS52_01069 PF00248 Aldo/keto reductase family AS52_01071 PF08864 UPF0302 domain AS52_01071 PF08858 IDEAL domain AS52_01072 PF02040 Arsenical pump membrane protein AS52_01073 PF13378 Enolase C-terminal domain-like AS52_01073 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS52_01075 PF01380 SIS domain AS52_01075 PF01418 Helix-turn-helix domain, rpiR family AS52_01076 PF00158 Sigma-54 interaction domain AS52_01079 PF07690 Major Facilitator Superfamily AS52_01080 PF00873 AcrB/AcrD/AcrF family AS52_01082 PF01022 Bacterial regulatory protein, arsR family AS52_01083 PF07853 Protein of unknown function (DUF1648) AS52_01083 PF13630 SdpI/YhfL protein family AS52_01088 PF00990 Diguanylate cyclase, GGDEF domain AS52_01088 PF00563 EAL domain AS52_01088 PF03707 Bacterial signalling protein N terminal repeat AS52_01089 PF01227 GTP cyclohydrolase I AS52_01090 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_01090 PF13192 Thioredoxin domain AS52_01092 PF03707 Bacterial signalling protein N terminal repeat AS52_01092 PF00563 EAL domain AS52_01092 PF00990 Diguanylate cyclase, GGDEF domain AS52_01095 PF00004 ATPase family associated with various cellular activities (AAA) AS52_01095 PF17866 AAA lid domain AS52_01097 PF00012 Hsp70 protein AS52_01099 PF00226 DnaJ domain AS52_01099 PF00684 DnaJ central domain AS52_01099 PF01556 DnaJ C terminal domain AS52_01101 PF00669 Bacterial flagellin N-terminal helical region AS52_01101 PF00700 Bacterial flagellin C-terminal helical region AS52_01102 PF00154 recA bacterial DNA recombination protein AS52_01102 PF03161 LAGLIDADG DNA endonuclease family AS52_01103 PF01470 Pyroglutamyl peptidase AS52_01111 PF01381 Helix-turn-helix AS52_01111 PF08671 Anti-repressor SinI AS52_01115 PF02397 Bacterial sugar transferase AS52_01116 PF01370 NAD dependent epimerase/dehydratase family AS52_01119 PF00535 Glycosyl transferase family 2 AS52_01120 PF00534 Glycosyl transferases group 1 AS52_01120 PF13439 Glycosyltransferase Family 4 AS52_01122 PF00672 HAMP domain AS52_01122 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS52_01122 PF02743 Cache domain AS52_01124 PF04122 Putative cell wall binding repeat 2 AS52_01124 PF08486 Stage II sporulation protein AS52_01130 PF00483 Nucleotidyl transferase AS52_01131 PF02397 Bacterial sugar transferase AS52_01132 PF01370 NAD dependent epimerase/dehydratase family AS52_01133 PF16363 GDP-mannose 4,6 dehydratase AS52_01135 PF00132 Bacterial transferase hexapeptide (six repeats) AS52_01135 PF12464 Maltose acetyltransferase AS52_01137 PF00535 Glycosyl transferase family 2 AS52_01142 PF00132 Bacterial transferase hexapeptide (six repeats) AS52_01144 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS52_01144 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS52_01144 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS52_01145 PF00483 Nucleotidyl transferase AS52_01145 PF01050 Mannose-6-phosphate isomerase AS52_01147 PF01238 Phosphomannose isomerase type I AS52_01148 PF02706 Chain length determinant protein AS52_01148 PF13807 G-rich domain on putative tyrosine kinase AS52_01149 PF13614 AAA domain AS52_01152 PF02350 UDP-N-acetylglucosamine 2-epimerase AS52_01153 PF00483 Nucleotidyl transferase AS52_01160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS52_01160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS52_01160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS52_01161 PF01061 ABC-2 type transporter AS52_01162 PF00005 ABC transporter AS52_01164 PF03816 Cell envelope-related transcriptional attenuator domain AS52_01169 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_01169 PF00205 Thiamine pyrophosphate enzyme, central domain AS52_01169 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS52_01170 PF01645 Conserved region in glutamate synthase AS52_01172 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS52_01172 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS52_01174 PF02447 GntP family permease AS52_01178 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AS52_01178 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_01178 PF18267 Rubredoxin NAD+ reductase C-terminal domain AS52_01178 PF04324 BFD-like [2Fe-2S] binding domain AS52_01178 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS52_01179 PF00355 Rieske [2Fe-2S] domain AS52_01180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_01181 PF01226 Formate/nitrite transporter AS52_01183 PF00294 pfkB family carbohydrate kinase AS52_01184 PF06800 Sugar transport protein AS52_01187 PF01554 MatE AS52_01189 PF01565 FAD binding domain AS52_01189 PF08031 Berberine and berberine like AS52_01190 PF03816 Cell envelope-related transcriptional attenuator domain AS52_01193 PF01544 CorA-like Mg2+ transporter protein AS52_01194 PF00082 Subtilase family AS52_01194 PF17936 Bacterial Ig domain AS52_01197 PF00583 Acetyltransferase (GNAT) family AS52_01198 PF13580 SIS domain AS52_01200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AS52_01201 PF01979 Amidohydrolase family AS52_01202 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS52_01202 PF00367 phosphotransferase system, EIIB AS52_01202 PF02378 Phosphotransferase system, EIIC AS52_01203 PF04474 Protein of unknown function (DUF554) AS52_01210 PF00005 ABC transporter AS52_01211 PF00571 CBS domain AS52_01211 PF03471 Transporter associated domain AS52_01211 PF01595 Cyclin M transmembrane N-terminal domain AS52_01212 PF13411 MerR HTH family regulatory protein AS52_01214 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_01215 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AS52_01218 PF10502 Signal peptidase, peptidase S26 AS52_01221 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS52_01221 PF00672 HAMP domain AS52_01221 PF02743 Cache domain AS52_01227 PF01546 Peptidase family M20/M25/M40 AS52_01230 PF13673 Acetyltransferase (GNAT) domain AS52_01230 PF04229 GrpB protein AS52_01231 PF07690 Major Facilitator Superfamily AS52_01233 PF00860 Permease family AS52_01235 PF00072 Response regulator receiver domain AS52_01235 PF04397 LytTr DNA-binding domain AS52_01236 PF00005 ABC transporter AS52_01237 PF12679 ABC-2 family transporter protein AS52_01239 PF13411 MerR HTH family regulatory protein AS52_01240 PF01047 MarR family AS52_01241 PF01625 Peptide methionine sulfoxide reductase AS52_01241 PF01641 SelR domain AS52_01242 PF03845 Spore germination protein AS52_01243 PF05504 Spore germination B3/ GerAC like, C-terminal AS52_01244 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_01245 PF00245 Alkaline phosphatase AS52_01246 PF04397 LytTr DNA-binding domain AS52_01246 PF00072 Response regulator receiver domain AS52_01247 PF00512 His Kinase A (phospho-acceptor) domain AS52_01247 PF00072 Response regulator receiver domain AS52_01247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01247 PF09308 LuxQ, periplasmic AS52_01248 PF03741 Integral membrane protein TerC family AS52_01249 PF04542 Sigma-70 region 2 AS52_01250 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_01255 PF00561 alpha/beta hydrolase fold AS52_01256 PF02386 Cation transport protein AS52_01260 PF07729 FCD domain AS52_01260 PF00392 Bacterial regulatory proteins, gntR family AS52_01261 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AS52_01261 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AS52_01261 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AS52_01262 PF02540 NAD synthase AS52_01263 PF02754 Cysteine-rich domain AS52_01264 PF13183 4Fe-4S dicluster domain AS52_01264 PF11870 Domain of unknown function (DUF3390) AS52_01264 PF02589 LUD domain AS52_01265 PF02589 LUD domain AS52_01266 PF13426 PAS domain AS52_01266 PF13188 PAS domain AS52_01266 PF00989 PAS fold AS52_01266 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01266 PF00512 His Kinase A (phospho-acceptor) domain AS52_01267 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AS52_01267 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AS52_01269 PF01008 Initiation factor 2 subunit family AS52_01270 PF01636 Phosphotransferase enzyme family AS52_01271 PF00795 Carbon-nitrogen hydrolase AS52_01272 PF00155 Aminotransferase class I and II AS52_01273 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AS52_01273 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AS52_01275 PF00596 Class II Aldolase and Adducin N-terminal domain AS52_01276 PF03079 ARD/ARD' family AS52_01278 PF00005 ABC transporter AS52_01279 PF02653 Branched-chain amino acid transport system / permease component AS52_01280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS52_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_01281 PF09388 Spo0E like sporulation regulatory protein AS52_01282 PF02535 ZIP Zinc transporter AS52_01284 PF01047 MarR family AS52_01286 PF08447 PAS fold AS52_01286 PF00989 PAS fold AS52_01286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01286 PF00512 His Kinase A (phospho-acceptor) domain AS52_01288 PF17871 AAA lid domain AS52_01288 PF10431 C-terminal, D2-small domain, of ClpB protein AS52_01288 PF07724 AAA domain (Cdc48 subfamily) AS52_01288 PF00004 ATPase family associated with various cellular activities (AAA) AS52_01292 PF00106 short chain dehydrogenase AS52_01293 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_01294 PF05504 Spore germination B3/ GerAC like, C-terminal AS52_01297 PF06508 Queuosine biosynthesis protein QueC AS52_01298 PF01242 6-pyruvoyl tetrahydropterin synthase AS52_01299 PF04055 Radical SAM superfamily AS52_01300 PF14489 QueF-like protein AS52_01301 PF13460 NAD(P)H-binding AS52_01303 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AS52_01304 PF00027 Cyclic nucleotide-binding domain AS52_01304 PF01734 Patatin-like phospholipase AS52_01307 PF07486 Cell Wall Hydrolase AS52_01310 PF00860 Permease family AS52_01315 PF02965 Vitamin B12 dependent methionine synthase, activation domain AS52_01315 PF02310 B12 binding domain AS52_01315 PF00809 Pterin binding enzyme AS52_01315 PF02574 Homocysteine S-methyltransferase AS52_01315 PF02607 B12 binding domain AS52_01316 PF02219 Methylenetetrahydrofolate reductase AS52_01316 PF02574 Homocysteine S-methyltransferase AS52_01318 PF00677 Lumazine binding domain AS52_01319 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AS52_01319 PF00925 GTP cyclohydrolase II AS52_01320 PF00885 6,7-dimethyl-8-ribityllumazine synthase AS52_01322 PF03123 CAT RNA binding domain AS52_01322 PF00874 PRD domain AS52_01323 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS52_01323 PF00367 phosphotransferase system, EIIB AS52_01323 PF02378 Phosphotransferase system, EIIC AS52_01324 PF00381 PTS HPr component phosphorylation site AS52_01325 PF02896 PEP-utilising enzyme, TIM barrel domain AS52_01325 PF00391 PEP-utilising enzyme, mobile domain AS52_01325 PF05524 PEP-utilising enzyme, N-terminal AS52_01326 PF04172 LrgB-like family AS52_01327 PF03788 LrgA family AS52_01328 PF03466 LysR substrate binding domain AS52_01328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_01330 PF00583 Acetyltransferase (GNAT) family AS52_01332 PF00881 Nitroreductase family AS52_01333 PF00155 Aminotransferase class I and II AS52_01337 PF01584 CheW-like domain AS52_01337 PF00072 Response regulator receiver domain AS52_01338 PF14177 YkyB-like protein AS52_01339 PF03734 L,D-transpeptidase catalytic domain AS52_01339 PF01476 LysM domain AS52_01340 PF02541 Ppx/GppA phosphatase family AS52_01341 PF13090 Polyphosphate kinase C-terminal domain 2 AS52_01341 PF02503 Polyphosphate kinase middle domain AS52_01341 PF17941 Polyphosphate kinase C-terminal domain 1 AS52_01341 PF13089 Polyphosphate kinase N-terminal domain AS52_01343 PF00149 Calcineurin-like phosphoesterase AS52_01343 PF10518 TAT (twin-arginine translocation) pathway signal sequence AS52_01345 PF10388 EAL-domain associated signalling protein domain AS52_01345 PF00563 EAL domain AS52_01348 PF08796 Protein of unknown function (DUF1797) AS52_01350 PF03466 LysR substrate binding domain AS52_01350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_01351 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AS52_01351 PF00132 Bacterial transferase hexapeptide (six repeats) AS52_01351 PF14602 Hexapeptide repeat of succinyl-transferase AS52_01352 PF07687 Peptidase dimerisation domain AS52_01352 PF01546 Peptidase family M20/M25/M40 AS52_01353 PF03698 Uncharacterised protein family (UPF0180) AS52_01354 PF00924 Mechanosensitive ion channel AS52_01355 PF00578 AhpC/TSA family AS52_01355 PF10417 C-terminal domain of 1-Cys peroxiredoxin AS52_01356 PF00578 AhpC/TSA family AS52_01357 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS52_01357 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS52_01358 PF00664 ABC transporter transmembrane region AS52_01358 PF00005 ABC transporter AS52_01359 PF00005 ABC transporter AS52_01359 PF00664 ABC transporter transmembrane region AS52_01360 PF02254 TrkA-N domain AS52_01360 PF02080 TrkA-C domain AS52_01361 PF17770 Ribonuclease J C-terminal domain AS52_01361 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS52_01361 PF00753 Metallo-beta-lactamase superfamily AS52_01364 PF01327 Polypeptide deformylase AS52_01367 PF00676 Dehydrogenase E1 component AS52_01368 PF02780 Transketolase, C-terminal domain AS52_01368 PF02779 Transketolase, pyrimidine binding domain AS52_01369 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS52_01369 PF00364 Biotin-requiring enzyme AS52_01369 PF02817 e3 binding domain AS52_01370 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_01370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS52_01372 PF02028 BCCT, betaine/carnitine/choline family transporter AS52_01374 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AS52_01374 PF01276 Orn/Lys/Arg decarboxylase, major domain AS52_01375 PF05256 Uncharacterised protein family (UPF0223) AS52_01376 PF06335 Protein of unknown function (DUF1054) AS52_01378 PF00459 Inositol monophosphatase family AS52_01381 PF14036 YlaH-like protein AS52_01383 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AS52_01385 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AS52_01386 PF02562 PhoH-like protein AS52_01386 PF13638 PIN domain AS52_01388 PF07408 Protein of unknown function (DUF1507) AS52_01389 PF01098 Cell cycle protein AS52_01390 PF02785 Biotin carboxylase C-terminal domain AS52_01390 PF00289 Biotin carboxylase, N-terminal domain AS52_01390 PF00364 Biotin-requiring enzyme AS52_01390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS52_01390 PF00682 HMGL-like AS52_01390 PF02436 Conserved carboxylase domain AS52_01391 PF02628 Cytochrome oxidase assembly protein AS52_01392 PF01040 UbiA prenyltransferase family AS52_01393 PF00034 Cytochrome c AS52_01393 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AS52_01393 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AS52_01394 PF00115 Cytochrome C and Quinol oxidase polypeptide I AS52_01395 PF00510 Cytochrome c oxidase subunit III AS52_01396 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AS52_01397 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AS52_01398 PF08868 YugN-like family AS52_01399 PF00571 CBS domain AS52_01400 PF00188 Cysteine-rich secretory protein family AS52_01400 PF14504 CAP-associated N-terminal AS52_01401 PF09577 Sporulation protein YpjB (SpoYpjB) AS52_01402 PF04298 Putative neutral zinc metallopeptidase AS52_01403 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_01403 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_01404 PF03819 MazG nucleotide pyrophosphohydrolase domain AS52_01405 PF01113 Dihydrodipicolinate reductase, N-terminus AS52_01405 PF05173 Dihydrodipicolinate reductase, C-terminus AS52_01406 PF02142 MGS-like domain AS52_01407 PF02585 GlcNAc-PI de-N-acetylase AS52_01408 PF13439 Glycosyltransferase Family 4 AS52_01408 PF00534 Glycosyl transferases group 1 AS52_01409 PF12627 Probable RNA and SrmB- binding site of polymerase A AS52_01409 PF13735 tRNA nucleotidyltransferase domain 2 putative AS52_01409 PF01743 Poly A polymerase head domain AS52_01410 PF02237 Biotin protein ligase C terminal domain AS52_01410 PF03099 Biotin/lipoate A/B protein ligase family AS52_01410 PF08279 HTH domain AS52_01411 PF02548 Ketopantoate hydroxymethyltransferase AS52_01412 PF02569 Pantoate-beta-alanine ligase AS52_01413 PF02261 Aspartate decarboxylase AS52_01414 PF00929 Exonuclease AS52_01414 PF04851 Type III restriction enzyme, res subunit AS52_01414 PF13307 Helicase C-terminal domain AS52_01416 PF14084 Protein of unknown function (DUF4264) AS52_01418 PF00155 Aminotransferase class I and II AS52_01419 PF01336 OB-fold nucleic acid binding domain AS52_01419 PF00152 tRNA synthetases class II (D, K and N) AS52_01420 PF07261 Replication initiation and membrane attachment AS52_01421 PF00633 Helix-hairpin-helix motif AS52_01421 PF10576 Iron-sulfur binding domain of endonuclease III AS52_01421 PF00730 HhH-GPD superfamily base excision DNA repair protein AS52_01423 PF00912 Transglycosylase AS52_01423 PF00905 Penicillin binding protein transpeptidase domain AS52_01424 PF03838 Recombination protein U AS52_01425 PF10720 Protein of unknown function (DUF2515) AS52_01428 PF08807 Bacterial domain of unknown function (DUF1798) AS52_01431 PF14179 YppG-like protein AS52_01434 PF08757 CotH kinase protein AS52_01437 PF01053 Cys/Met metabolism PLP-dependent enzyme AS52_01438 PF01053 Cys/Met metabolism PLP-dependent enzyme AS52_01441 PF00474 Sodium:solute symporter family AS52_01442 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AS52_01444 PF00313 'Cold-shock' DNA-binding domain AS52_01447 PF00990 Diguanylate cyclase, GGDEF domain AS52_01449 PF00271 Helicase conserved C-terminal domain AS52_01449 PF09369 Domain of unknown function (DUF1998) AS52_01449 PF00270 DEAD/DEAH box helicase AS52_01450 PF13482 RNase_H superfamily AS52_01452 PF06908 YspA SLOG family AS52_01453 PF05103 DivIVA protein AS52_01457 PF07730 Histidine kinase AS52_01457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01458 PF00196 Bacterial regulatory proteins, luxR family AS52_01458 PF00072 Response regulator receiver domain AS52_01459 PF00128 Alpha amylase, catalytic domain AS52_01459 PF16657 Maltogenic Amylase, C-terminal domain AS52_01460 PF02926 THUMP domain AS52_01460 PF01170 Putative RNA methylase family UPF0020 AS52_01462 PF00528 Binding-protein-dependent transport system inner membrane component AS52_01463 PF00528 Binding-protein-dependent transport system inner membrane component AS52_01465 PF17912 MalK OB fold domain AS52_01465 PF00005 ABC transporter AS52_01465 PF03459 TOBE domain AS52_01467 PF13307 Helicase C-terminal domain AS52_01468 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AS52_01469 PF00156 Phosphoribosyl transferase domain AS52_01470 PF00860 Permease family AS52_01471 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_01471 PF03466 LysR substrate binding domain AS52_01472 PF00171 Aldehyde dehydrogenase family AS52_01474 PF02797 Chalcone and stilbene synthases, C-terminal domain AS52_01474 PF00195 Chalcone and stilbene synthases, N-terminal domain AS52_01475 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AS52_01476 PF00350 Dynamin family AS52_01477 PF10127 RNA repair pathway DNA polymerase beta family AS52_01478 PF10752 Protein of unknown function (DUF2533) AS52_01482 PF13456 Reverse transcriptase-like AS52_01483 PF13456 Reverse transcriptase-like AS52_01484 PF10782 Zinc-finger AS52_01486 PF00313 'Cold-shock' DNA-binding domain AS52_01488 PF07690 Major Facilitator Superfamily AS52_01490 PF00860 Permease family AS52_01491 PF04951 D-aminopeptidase AS52_01492 PF00528 Binding-protein-dependent transport system inner membrane component AS52_01493 PF00528 Binding-protein-dependent transport system inner membrane component AS52_01493 PF12911 N-terminal TM domain of oligopeptide transport permease C AS52_01494 PF00005 ABC transporter AS52_01494 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_01495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS52_01496 PF02016 LD-carboxypeptidase N-terminal domain AS52_01496 PF17676 LD-carboxypeptidase C-terminal domain AS52_01497 PF00877 NlpC/P60 family AS52_01498 PF00005 ABC transporter AS52_01498 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_01501 PF13302 Acetyltransferase (GNAT) domain AS52_01502 PF00563 EAL domain AS52_01502 PF03707 Bacterial signalling protein N terminal repeat AS52_01502 PF00990 Diguanylate cyclase, GGDEF domain AS52_01503 PF09323 Domain of unknown function (DUF1980) AS52_01504 PF03773 Predicted permease AS52_01505 PF01497 Periplasmic binding protein AS52_01506 PF01032 FecCD transport family AS52_01507 PF01032 FecCD transport family AS52_01508 PF00005 ABC transporter AS52_01515 PF00196 Bacterial regulatory proteins, luxR family AS52_01515 PF00072 Response regulator receiver domain AS52_01516 PF07730 Histidine kinase AS52_01517 PF00487 Fatty acid desaturase AS52_01518 PF10990 Protein of unknown function (DUF2809) AS52_01519 PF10990 Protein of unknown function (DUF2809) AS52_01521 PF13396 Phospholipase_D-nuclease N-terminal AS52_01521 PF13091 PLD-like domain AS52_01522 PF06724 Domain of Unknown Function (DUF1206) AS52_01523 PF10676 Spore germination protein gerPA/gerPF AS52_01524 PF00877 NlpC/P60 family AS52_01524 PF01476 LysM domain AS52_01525 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AS52_01526 PF00483 Nucleotidyl transferase AS52_01528 PF07690 Major Facilitator Superfamily AS52_01532 PF01323 DSBA-like thioredoxin domain AS52_01533 PF00082 Subtilase family AS52_01535 PF01047 MarR family AS52_01537 PF07690 Major Facilitator Superfamily AS52_01541 PF14151 YfhD-like protein AS52_01542 PF01032 FecCD transport family AS52_01543 PF01032 FecCD transport family AS52_01544 PF01497 Periplasmic binding protein AS52_01545 PF00005 ABC transporter AS52_01547 PF01053 Cys/Met metabolism PLP-dependent enzyme AS52_01548 PF07690 Major Facilitator Superfamily AS52_01549 PF00248 Aldo/keto reductase family AS52_01552 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AS52_01552 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AS52_01553 PF01638 HxlR-like helix-turn-helix AS52_01554 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AS52_01555 PF16350 FAD dependent oxidoreductase central domain AS52_01555 PF01571 Aminomethyltransferase folate-binding domain AS52_01555 PF08669 Glycine cleavage T-protein C-terminal barrel domain AS52_01555 PF01266 FAD dependent oxidoreductase AS52_01556 PF01266 FAD dependent oxidoreductase AS52_01557 PF00355 Rieske [2Fe-2S] domain AS52_01557 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AS52_01558 PF00005 ABC transporter AS52_01558 PF00571 CBS domain AS52_01559 PF00528 Binding-protein-dependent transport system inner membrane component AS52_01561 PF00391 PEP-utilising enzyme, mobile domain AS52_01561 PF00224 Pyruvate kinase, barrel domain AS52_01561 PF02887 Pyruvate kinase, alpha/beta domain AS52_01562 PF09308 LuxQ, periplasmic AS52_01562 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01562 PF00512 His Kinase A (phospho-acceptor) domain AS52_01562 PF00072 Response regulator receiver domain AS52_01563 PF01739 CheR methyltransferase, SAM binding domain AS52_01563 PF03705 CheR methyltransferase, all-alpha domain AS52_01564 PF13426 PAS domain AS52_01564 PF07228 Stage II sporulation protein E (SpoIIE) AS52_01566 PF13520 Amino acid permease AS52_01568 PF13419 Haloacid dehalogenase-like hydrolase AS52_01570 PF02435 Levansucrase/Invertase AS52_01571 PF00251 Glycosyl hydrolases family 32 N-terminal domain AS52_01571 PF08244 Glycosyl hydrolases family 32 C terminal AS52_01572 PF00210 Ferritin-like domain AS52_01573 PF07690 Major Facilitator Superfamily AS52_01574 PF00155 Aminotransferase class I and II AS52_01575 PF01370 NAD dependent epimerase/dehydratase family AS52_01576 PF09021 HutP AS52_01577 PF07690 Major Facilitator Superfamily AS52_01580 PF00171 Aldehyde dehydrogenase family AS52_01582 PF01810 LysE type translocator AS52_01583 PF00324 Amino acid permease AS52_01585 PF14139 YpzG-like protein AS52_01586 PF17770 Ribonuclease J C-terminal domain AS52_01586 PF00753 Metallo-beta-lactamase superfamily AS52_01586 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS52_01591 PF00324 Amino acid permease AS52_01593 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_01594 PF00356 Bacterial regulatory proteins, lacI family AS52_01595 PF01306 LacY proton/sugar symporter AS52_01596 PF08244 Glycosyl hydrolases family 32 C terminal AS52_01596 PF00251 Glycosyl hydrolases family 32 N-terminal domain AS52_01597 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AS52_01598 PF02435 Levansucrase/Invertase AS52_01599 PF00158 Sigma-54 interaction domain AS52_01599 PF03610 PTS system fructose IIA component AS52_01599 PF00874 PRD domain AS52_01600 PF03610 PTS system fructose IIA component AS52_01601 PF03830 PTS system sorbose subfamily IIB component AS52_01602 PF03609 PTS system sorbose-specific iic component AS52_01603 PF03613 PTS system mannose/fructose/sorbose family IID component AS52_01604 PF00251 Glycosyl hydrolases family 32 N-terminal domain AS52_01604 PF08244 Glycosyl hydrolases family 32 C terminal AS52_01606 PF00296 Luciferase-like monooxygenase AS52_01607 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_01607 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AS52_01608 PF03180 NLPA lipoprotein AS52_01609 PF09383 NIL domain AS52_01609 PF00005 ABC transporter AS52_01610 PF00528 Binding-protein-dependent transport system inner membrane component AS52_01611 PF03180 NLPA lipoprotein AS52_01613 PF00557 Metallopeptidase family M24 AS52_01616 PF04073 Aminoacyl-tRNA editing domain AS52_01618 PF00248 Aldo/keto reductase family AS52_01619 PF00221 Aromatic amino acid lyase AS52_01620 PF17392 Urocanase C-terminal domain AS52_01620 PF01175 Urocanase Rossmann-like domain AS52_01620 PF17391 Urocanase N-terminal domain AS52_01621 PF01979 Amidohydrolase family AS52_01622 PF00491 Arginase family AS52_01623 PF12802 MarR family AS52_01625 PF01156 Inosine-uridine preferring nucleoside hydrolase AS52_01626 PF03606 C4-dicarboxylate anaerobic carrier AS52_01627 PF01979 Amidohydrolase family AS52_01628 PF03575 Peptidase family S51 AS52_01629 PF00158 Sigma-54 interaction domain AS52_01629 PF13426 PAS domain AS52_01629 PF02954 Bacterial regulatory protein, Fis family AS52_01632 PF00106 short chain dehydrogenase AS52_01633 PF13411 MerR HTH family regulatory protein AS52_01635 PF13302 Acetyltransferase (GNAT) domain AS52_01639 PF01047 MarR family AS52_01640 PF00583 Acetyltransferase (GNAT) family AS52_01641 PF01022 Bacterial regulatory protein, arsR family AS52_01652 PF13419 Haloacid dehalogenase-like hydrolase AS52_01654 PF01965 DJ-1/PfpI family AS52_01655 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS52_01655 PF00367 phosphotransferase system, EIIB AS52_01655 PF02378 Phosphotransferase system, EIIC AS52_01656 PF00232 Glycosyl hydrolase family 1 AS52_01657 PF03123 CAT RNA binding domain AS52_01657 PF00874 PRD domain AS52_01659 PF00391 PEP-utilising enzyme, mobile domain AS52_01659 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AS52_01660 PF00440 Bacterial regulatory proteins, tetR family AS52_01661 PF07690 Major Facilitator Superfamily AS52_01664 PF00293 NUDIX domain AS52_01668 PF00877 NlpC/P60 family AS52_01668 PF01476 LysM domain AS52_01672 PF05163 DinB family AS52_01679 PF03466 LysR substrate binding domain AS52_01679 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_01680 PF12697 Alpha/beta hydrolase family AS52_01683 PF00561 alpha/beta hydrolase fold AS52_01689 PF09335 SNARE associated Golgi protein AS52_01690 PF04101 Glycosyltransferase family 28 C-terminal domain AS52_01690 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AS52_01691 PF13739 Deacetylase PdaC AS52_01691 PF11738 Protein of unknown function (DUF3298) AS52_01691 PF01522 Polysaccharide deacetylase AS52_01694 PF03845 Spore germination protein AS52_01696 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_01697 PF12833 Helix-turn-helix domain AS52_01703 PF01699 Sodium/calcium exchanger protein AS52_01704 PF13193 AMP-binding enzyme C-terminal domain AS52_01704 PF00501 AMP-binding enzyme AS52_01709 PF03176 MMPL family AS52_01710 PF00440 Bacterial regulatory proteins, tetR family AS52_01710 PF08361 MAATS-type transcriptional repressor, C-terminal region AS52_01711 PF03741 Integral membrane protein TerC family AS52_01712 PF07702 UTRA domain AS52_01712 PF00392 Bacterial regulatory proteins, gntR family AS52_01713 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AS52_01714 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS52_01715 PF00232 Glycosyl hydrolase family 1 AS52_01716 PF02378 Phosphotransferase system, EIIC AS52_01717 PF00480 ROK family AS52_01719 PF13404 AsnC-type helix-turn-helix domain AS52_01719 PF01037 Lrp/AsnC ligand binding domain AS52_01727 PF00893 Small Multidrug Resistance protein AS52_01728 PF00893 Small Multidrug Resistance protein AS52_01729 PF03466 LysR substrate binding domain AS52_01729 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_01738 PF00313 'Cold-shock' DNA-binding domain AS52_01740 PF00205 Thiamine pyrophosphate enzyme, central domain AS52_01740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_01740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS52_01748 PF13581 Histidine kinase-like ATPase domain AS52_01749 PF01476 LysM domain AS52_01749 PF00704 Glycosyl hydrolases family 18 AS52_01750 PF01476 LysM domain AS52_01750 PF03734 L,D-transpeptidase catalytic domain AS52_01751 PF00682 HMGL-like AS52_01751 PF07836 DmpG-like communication domain AS52_01752 PF03601 Conserved hypothetical protein 698 AS52_01753 PF01790 Prolipoprotein diacylglyceryl transferase AS52_01757 PF08241 Methyltransferase domain AS52_01759 PF13302 Acetyltransferase (GNAT) domain AS52_01761 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS52_01762 PF02040 Arsenical pump membrane protein AS52_01763 PF01022 Bacterial regulatory protein, arsR family AS52_01765 PF01022 Bacterial regulatory protein, arsR family AS52_01766 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_01767 PF05995 Cysteine dioxygenase type I AS52_01768 PF00892 EamA-like transporter family AS52_01769 PF01638 HxlR-like helix-turn-helix AS52_01770 PF00753 Metallo-beta-lactamase superfamily AS52_01771 PF00795 Carbon-nitrogen hydrolase AS52_01772 PF02311 AraC-like ligand binding domain AS52_01772 PF12833 Helix-turn-helix domain AS52_01773 PF00465 Iron-containing alcohol dehydrogenase AS52_01774 PF02733 Dak1 domain AS52_01780 PF00899 ThiF family AS52_01784 PF00154 recA bacterial DNA recombination protein AS52_01788 PF10924 Protein of unknown function (DUF2711) AS52_01791 PF01545 Cation efflux family AS52_01791 PF16916 Dimerisation domain of Zinc Transporter AS52_01799 PF02517 CPBP intramembrane metalloprotease AS52_01800 PF13021 Domain of unknown function (DUF3885) AS52_01802 PF07690 Major Facilitator Superfamily AS52_01803 PF13411 MerR HTH family regulatory protein AS52_01804 PF00248 Aldo/keto reductase family AS52_01829 PF10905 Protein of unknown function (DUF2695) AS52_01834 PF13333 Integrase core domain AS52_01834 PF00665 Integrase core domain AS52_01834 PF13276 HTH-like domain AS52_01838 PF11799 impB/mucB/samB family C-terminal domain AS52_01838 PF11798 IMS family HHH motif AS52_01838 PF00817 impB/mucB/samB family AS52_01846 PF00391 PEP-utilising enzyme, mobile domain AS52_01846 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AS52_01847 PF07722 Peptidase C26 AS52_01848 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS52_01849 PF00528 Binding-protein-dependent transport system inner membrane component AS52_01851 PF00005 ABC transporter AS52_01851 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_01852 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_01852 PF00005 ABC transporter AS52_01853 PF04073 Aminoacyl-tRNA editing domain AS52_01854 PF17247 Family of unknown function (DUF5316) AS52_01856 PF00989 PAS fold AS52_01856 PF00512 His Kinase A (phospho-acceptor) domain AS52_01856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01857 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01857 PF00512 His Kinase A (phospho-acceptor) domain AS52_01857 PF13493 Domain of unknown function (DUF4118) AS52_01857 PF00989 PAS fold AS52_01857 PF13426 PAS domain AS52_01857 PF08447 PAS fold AS52_01858 PF00158 Sigma-54 interaction domain AS52_01858 PF02954 Bacterial regulatory protein, Fis family AS52_01858 PF00072 Response regulator receiver domain AS52_01860 PF00083 Sugar (and other) transporter AS52_01861 PF00106 short chain dehydrogenase AS52_01864 PF00171 Aldehyde dehydrogenase family AS52_01866 PF02954 Bacterial regulatory protein, Fis family AS52_01866 PF00072 Response regulator receiver domain AS52_01866 PF00158 Sigma-54 interaction domain AS52_01867 PF00701 Dihydrodipicolinate synthetase family AS52_01868 PF00465 Iron-containing alcohol dehydrogenase AS52_01869 PF17042 Nucleotide-binding C-terminal domain AS52_01869 PF07005 Sugar-binding N-terminal domain AS52_01870 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AS52_01876 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS52_01879 PF01263 Aldose 1-epimerase AS52_01881 PF00571 CBS domain AS52_01883 PF00067 Cytochrome P450 AS52_01884 PF00440 Bacterial regulatory proteins, tetR family AS52_01884 PF17922 Tetracyclin repressor-like, C-terminal domain AS52_01885 PF00480 ROK family AS52_01887 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS52_01887 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS52_01888 PF00083 Sugar (and other) transporter AS52_01889 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AS52_01890 PF00115 Cytochrome C and Quinol oxidase polypeptide I AS52_01891 PF00510 Cytochrome c oxidase subunit III AS52_01892 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AS52_01893 PF00582 Universal stress protein family AS52_01895 PF02628 Cytochrome oxidase assembly protein AS52_01896 PF13454 FAD-NAD(P)-binding AS52_01898 PF00860 Permease family AS52_01899 PF03600 Citrate transporter AS52_01900 PF00676 Dehydrogenase E1 component AS52_01901 PF02780 Transketolase, C-terminal domain AS52_01901 PF02779 Transketolase, pyrimidine binding domain AS52_01902 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS52_01902 PF02817 e3 binding domain AS52_01902 PF00364 Biotin-requiring enzyme AS52_01903 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS52_01903 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_01904 PF02954 Bacterial regulatory protein, Fis family AS52_01904 PF00158 Sigma-54 interaction domain AS52_01904 PF01590 GAF domain AS52_01905 PF01053 Cys/Met metabolism PLP-dependent enzyme AS52_01906 PF01047 MarR family AS52_01907 PF03845 Spore germination protein AS52_01908 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_01909 PF05504 Spore germination B3/ GerAC like, C-terminal AS52_01914 PF01594 AI-2E family transporter AS52_01915 PF02416 mttA/Hcf106 family AS52_01916 PF02614 Glucuronate isomerase AS52_01918 PF00356 Bacterial regulatory proteins, lacI family AS52_01919 PF08125 Mannitol dehydrogenase C-terminal domain AS52_01919 PF01232 Mannitol dehydrogenase Rossmann domain AS52_01920 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AS52_01920 PF08666 SAF domain AS52_01921 PF12708 Pectate lyase superfamily protein AS52_01921 PF08548 Peptidase M10 serralysin C terminal AS52_01921 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AS52_01922 PF08532 Beta-galactosidase trimerisation domain AS52_01922 PF02449 Beta-galactosidase AS52_01922 PF08533 Beta-galactosidase C-terminal domain AS52_01926 PF08864 UPF0302 domain AS52_01926 PF08858 IDEAL domain AS52_01927 PF00582 Universal stress protein family AS52_01928 PF00512 His Kinase A (phospho-acceptor) domain AS52_01928 PF00989 PAS fold AS52_01928 PF16736 Single Cache-like AS52_01928 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_01929 PF00072 Response regulator receiver domain AS52_01929 PF00486 Transcriptional regulatory protein, C terminal AS52_01930 PF02583 Metal-sensitive transcriptional repressor AS52_01931 PF00403 Heavy-metal-associated domain AS52_01932 PF00403 Heavy-metal-associated domain AS52_01934 PF07563 Protein of unknown function (DUF1541) AS52_01935 PF07690 Major Facilitator Superfamily AS52_01943 PF01022 Bacterial regulatory protein, arsR family AS52_01944 PF02040 Arsenical pump membrane protein AS52_01946 PF03061 Thioesterase superfamily AS52_01947 PF00293 NUDIX domain AS52_01948 PF04239 Protein of unknown function (DUF421) AS52_01951 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AS52_01951 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AS52_01952 PF00180 Isocitrate/isopropylmalate dehydrogenase AS52_01953 PF07690 Major Facilitator Superfamily AS52_01954 PF01638 HxlR-like helix-turn-helix AS52_01955 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AS52_01955 PF00925 GTP cyclohydrolase II AS52_01956 PF01872 RibD C-terminal domain AS52_01956 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS52_01961 PF08241 Methyltransferase domain AS52_01966 PF00581 Rhodanese-like domain AS52_01968 PF13539 D-alanyl-D-alanine carboxypeptidase AS52_01970 PF01522 Polysaccharide deacetylase AS52_01978 PF04204 Homoserine O-succinyltransferase AS52_01979 PF01268 Formate--tetrahydrofolate ligase AS52_01981 PF00255 Glutathione peroxidase AS52_01982 PF01966 HD domain AS52_01983 PF00005 ABC transporter AS52_01983 PF12848 ABC transporter AS52_01983 PF16326 ABC transporter C-terminal domain AS52_01984 PF08712 Scaffold protein Nfu/NifU N terminal AS52_01984 PF13769 Virulence factor AS52_01985 PF11738 Protein of unknown function (DUF3298) AS52_01985 PF13739 Deacetylase PdaC AS52_01985 PF01522 Polysaccharide deacetylase AS52_01986 PF06491 Disulphide isomerase AS52_01987 PF04445 Putative SAM-dependent methyltransferase AS52_01988 PF14005 YpjP-like protein AS52_01989 PF00085 Thioredoxin AS52_01990 PF01497 Periplasmic binding protein AS52_01992 PF03186 CobD/Cbib protein AS52_01993 PF00155 Aminotransferase class I and II AS52_01994 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AS52_01995 PF02654 Cobalamin-5-phosphate synthase AS52_01996 PF00300 Histidine phosphatase superfamily (branch 1) AS52_01998 PF01923 Cobalamin adenosyltransferase AS52_01999 PF00892 EamA-like transporter family AS52_02000 PF13411 MerR HTH family regulatory protein AS52_02002 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS52_02002 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS52_02003 PF02558 Ketopantoate reductase PanE/ApbA AS52_02003 PF08546 Ketopantoate reductase PanE/ApbA C terminal AS52_02004 PF01541 GIY-YIG catalytic domain AS52_02004 PF08459 UvrC Helix-hairpin-helix N-terminal AS52_02004 PF02151 UvrB/uvrC motif AS52_02006 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AS52_02006 PF01367 5'-3' exonuclease, C-terminal SAM fold AS52_02007 PF08830 Protein of unknown function (DUF1806) AS52_02008 PF02585 GlcNAc-PI de-N-acetylase AS52_02009 PF03807 NADP oxidoreductase coenzyme F420-dependent AS52_02009 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS52_02010 PF04134 Protein of unknown function, DUF393 AS52_02011 PF04542 Sigma-70 region 2 AS52_02011 PF08281 Sigma-70, region 4 AS52_02013 PF00011 Hsp20/alpha crystallin family AS52_02014 PF02334 Replication terminator protein AS52_02015 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS52_02015 PF18277 AbrB C-terminal domain AS52_02016 PF01554 MatE AS52_02018 PF01593 Flavin containing amine oxidoreductase AS52_02019 PF00535 Glycosyl transferase family 2 AS52_02022 PF00884 Sulfatase AS52_02024 PF05816 Toxic anion resistance protein (TelA) AS52_02028 PF11738 Protein of unknown function (DUF3298) AS52_02028 PF01522 Polysaccharide deacetylase AS52_02028 PF13739 Deacetylase PdaC AS52_02029 PF02080 TrkA-C domain AS52_02029 PF00999 Sodium/hydrogen exchanger family AS52_02029 PF03471 Transporter associated domain AS52_02030 PF04389 Peptidase family M28 AS52_02030 PF02225 PA domain AS52_02031 PF13188 PAS domain AS52_02031 PF00512 His Kinase A (phospho-acceptor) domain AS52_02031 PF00989 PAS fold AS52_02031 PF13426 PAS domain AS52_02031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02033 PF00375 Sodium:dicarboxylate symporter family AS52_02034 PF00128 Alpha amylase, catalytic domain AS52_02034 PF03714 Bacterial pullanase-associated domain AS52_02034 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS52_02035 PF00171 Aldehyde dehydrogenase family AS52_02036 PF00067 Cytochrome P450 AS52_02040 PF01618 MotA/TolQ/ExbB proton channel family AS52_02041 PF00691 OmpA family AS52_02041 PF13677 Membrane MotB of proton-channel complex MotA/MotB AS52_02043 PF01593 Flavin containing amine oxidoreductase AS52_02044 PF09844 Uncharacterized conserved protein (COG2071) AS52_02045 PF01625 Peptide methionine sulfoxide reductase AS52_02046 PF03553 Na+/H+ antiporter family AS52_02047 PF07729 FCD domain AS52_02047 PF00392 Bacterial regulatory proteins, gntR family AS52_02048 PF00324 Amino acid permease AS52_02049 PF01757 Acyltransferase family AS52_02050 PF05698 Bacterial trigger factor protein (TF) C-terminus AS52_02052 PF00072 Response regulator receiver domain AS52_02052 PF00486 Transcriptional regulatory protein, C terminal AS52_02053 PF00512 His Kinase A (phospho-acceptor) domain AS52_02053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02054 PF01979 Amidohydrolase family AS52_02055 PF00854 POT family AS52_02057 PF00390 Malic enzyme, N-terminal domain AS52_02057 PF03949 Malic enzyme, NAD binding domain AS52_02058 PF03390 2-hydroxycarboxylate transporter family AS52_02060 PF00296 Luciferase-like monooxygenase AS52_02063 PF00462 Glutaredoxin AS52_02064 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS52_02065 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02066 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02067 PF00005 ABC transporter AS52_02068 PF01687 Riboflavin kinase AS52_02069 PF00296 Luciferase-like monooxygenase AS52_02071 PF05036 Sporulation related domain AS52_02071 PF01520 N-acetylmuramoyl-L-alanine amidase AS52_02076 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS52_02076 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS52_02077 PF06560 Glucose-6-phosphate isomerase (GPI) AS52_02078 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS52_02078 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS52_02078 PF01842 ACT domain AS52_02082 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AS52_02083 PF07690 Major Facilitator Superfamily AS52_02087 PF00067 Cytochrome P450 AS52_02088 PF03641 Possible lysine decarboxylase AS52_02089 PF00390 Malic enzyme, N-terminal domain AS52_02089 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS52_02089 PF03949 Malic enzyme, NAD binding domain AS52_02090 PF03703 Bacterial PH domain AS52_02091 PF03703 Bacterial PH domain AS52_02092 PF00291 Pyridoxal-phosphate dependent enzyme AS52_02094 PF00294 pfkB family carbohydrate kinase AS52_02095 PF01040 UbiA prenyltransferase family AS52_02096 PF05908 Poly-gamma-glutamate hydrolase AS52_02099 PF13411 MerR HTH family regulatory protein AS52_02104 PF08141 Small acid-soluble spore protein H family AS52_02105 PF13037 Domain of unknown function (DUF3898) AS52_02105 PF13039 Protein of unknown function (DUF3900) AS52_02106 PF03466 LysR substrate binding domain AS52_02106 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_02107 PF01493 GXGXG motif AS52_02107 PF01645 Conserved region in glutamate synthase AS52_02107 PF00310 Glutamine amidotransferases class-II AS52_02107 PF04898 Glutamate synthase central domain AS52_02108 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AS52_02108 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_02112 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AS52_02112 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AS52_02115 PF13091 PLD-like domain AS52_02117 PF01047 MarR family AS52_02118 PF03788 LrgA family AS52_02119 PF04172 LrgB-like family AS52_02120 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain AS52_02120 PF01740 STAS domain AS52_02122 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AS52_02123 PF00535 Glycosyl transferase family 2 AS52_02124 PF04138 GtrA-like protein AS52_02125 PF00483 Nucleotidyl transferase AS52_02126 PF00072 Response regulator receiver domain AS52_02126 PF00486 Transcriptional regulatory protein, C terminal AS52_02127 PF00672 HAMP domain AS52_02127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02127 PF00512 His Kinase A (phospho-acceptor) domain AS52_02128 PF10055 Uncharacterized small protein (DUF2292) AS52_02131 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02132 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02133 PF00005 ABC transporter AS52_02133 PF12857 TOBE-like domain AS52_02133 PF17850 CysA C-terminal regulatory domain AS52_02134 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AS52_02134 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AS52_02135 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_02135 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_02138 PF00455 DeoR C terminal sensor domain AS52_02138 PF08220 DeoR-like helix-turn-helix domain AS52_02139 PF00294 pfkB family carbohydrate kinase AS52_02140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS52_02140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS52_02141 PF00696 Amino acid kinase family AS52_02141 PF13840 ACT domain AS52_02143 PF00080 Copper/zinc superoxide dismutase (SODC) AS52_02144 PF01593 Flavin containing amine oxidoreductase AS52_02146 PF00106 short chain dehydrogenase AS52_02147 PF01022 Bacterial regulatory protein, arsR family AS52_02148 PF00171 Aldehyde dehydrogenase family AS52_02149 PF03070 TENA/THI-4/PQQC family AS52_02153 PF00209 Sodium:neurotransmitter symporter family AS52_02154 PF07486 Cell Wall Hydrolase AS52_02155 PF00356 Bacterial regulatory proteins, lacI family AS52_02157 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS52_02157 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS52_02158 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS52_02158 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS52_02159 PF01261 Xylose isomerase-like TIM barrel AS52_02160 PF02245 Methylpurine-DNA glycosylase (MPG) AS52_02161 PF08245 Mur ligase middle domain AS52_02161 PF02875 Mur ligase family, glutamate ligase domain AS52_02161 PF01225 Mur ligase family, catalytic domain AS52_02163 PF00583 Acetyltransferase (GNAT) family AS52_02164 PF08360 QacR-like protein, C-terminal region AS52_02164 PF00440 Bacterial regulatory proteins, tetR family AS52_02165 PF07690 Major Facilitator Superfamily AS52_02166 PF02110 Hydroxyethylthiazole kinase family AS52_02167 PF02581 Thiamine monophosphate synthase AS52_02168 PF16242 Pyridoxamine 5'-phosphate oxidase like AS52_02172 PF04542 Sigma-70 region 2 AS52_02172 PF08281 Sigma-70, region 4 AS52_02173 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AS52_02174 PF07728 AAA domain (dynein-related subfamily) AS52_02175 PF00092 von Willebrand factor type A domain AS52_02176 PF00892 EamA-like transporter family AS52_02177 PF02929 Beta galactosidase small chain AS52_02177 PF00703 Glycosyl hydrolases family 2 AS52_02177 PF16353 Domain of unknown function(DUF4981) AS52_02177 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AS52_02177 PF02837 Glycosyl hydrolases family 2, sugar binding domain AS52_02178 PF12833 Helix-turn-helix domain AS52_02178 PF02311 AraC-like ligand binding domain AS52_02181 PF00005 ABC transporter AS52_02184 PF13249 Squalene-hopene cyclase N-terminal domain AS52_02184 PF13243 Squalene-hopene cyclase C-terminal domain AS52_02186 PF01256 Carbohydrate kinase AS52_02186 PF03853 YjeF-related protein N-terminus AS52_02189 PF01925 Sulfite exporter TauE/SafE AS52_02190 PF11495 Archaeal transcriptional regulator TrmB AS52_02190 PF01978 Sugar-specific transcriptional regulator TrmB AS52_02192 PF02525 Flavodoxin-like fold AS52_02195 PF00486 Transcriptional regulatory protein, C terminal AS52_02195 PF00072 Response regulator receiver domain AS52_02196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02196 PF00512 His Kinase A (phospho-acceptor) domain AS52_02197 PF00155 Aminotransferase class I and II AS52_02197 PF00392 Bacterial regulatory proteins, gntR family AS52_02198 PF01810 LysE type translocator AS52_02199 PF01810 LysE type translocator AS52_02202 PF01381 Helix-turn-helix AS52_02212 PF01810 LysE type translocator AS52_02213 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_02216 PF07690 Major Facilitator Superfamily AS52_02218 PF10127 RNA repair pathway DNA polymerase beta family AS52_02221 PF01381 Helix-turn-helix AS52_02221 PF08671 Anti-repressor SinI AS52_02222 PF01494 FAD binding domain AS52_02224 PF00293 NUDIX domain AS52_02225 PF00857 Isochorismatase family AS52_02226 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AS52_02226 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AS52_02226 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AS52_02227 PF01467 Cytidylyltransferase-like AS52_02228 PF02540 NAD synthase AS52_02229 PF00575 S1 RNA binding domain AS52_02230 PF02225 PA domain AS52_02230 PF13860 FlgD Ig-like domain AS52_02230 PF05922 Peptidase inhibitor I9 AS52_02230 PF00082 Subtilase family AS52_02232 PF00708 Acylphosphatase AS52_02233 PF07690 Major Facilitator Superfamily AS52_02234 PF00296 Luciferase-like monooxygenase AS52_02235 PF00535 Glycosyl transferase family 2 AS52_02237 PF12833 Helix-turn-helix domain AS52_02237 PF07883 Cupin domain AS52_02238 PF00892 EamA-like transporter family AS52_02239 PF00005 ABC transporter AS52_02239 PF12848 ABC transporter AS52_02240 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_02241 PF03845 Spore germination protein AS52_02242 PF05504 Spore germination B3/ GerAC like, C-terminal AS52_02243 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ AS52_02244 PF00005 ABC transporter AS52_02246 PF03553 Na+/H+ antiporter family AS52_02248 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AS52_02248 PF00356 Bacterial regulatory proteins, lacI family AS52_02249 PF11132 Transcriptional regulator protein (SplA) AS52_02254 PF01131 DNA topoisomerase AS52_02254 PF01751 Toprim domain AS52_02256 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS52_02256 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_02261 PF13091 PLD-like domain AS52_02265 PF03553 Na+/H+ antiporter family AS52_02266 PF03845 Spore germination protein AS52_02267 PF05504 Spore germination B3/ GerAC like, C-terminal AS52_02268 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_02270 PF13302 Acetyltransferase (GNAT) domain AS52_02272 PF00989 PAS fold AS52_02272 PF13426 PAS domain AS52_02272 PF13188 PAS domain AS52_02272 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02272 PF00512 His Kinase A (phospho-acceptor) domain AS52_02273 PF00158 Sigma-54 interaction domain AS52_02273 PF02954 Bacterial regulatory protein, Fis family AS52_02273 PF00072 Response regulator receiver domain AS52_02275 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS52_02275 PF13378 Enolase C-terminal domain-like AS52_02276 PF00171 Aldehyde dehydrogenase family AS52_02277 PF10415 Fumarase C C-terminus AS52_02277 PF00206 Lyase AS52_02278 PF00171 Aldehyde dehydrogenase family AS52_02279 PF08240 Alcohol dehydrogenase GroES-like domain AS52_02279 PF00107 Zinc-binding dehydrogenase AS52_02280 PF00465 Iron-containing alcohol dehydrogenase AS52_02281 PF02028 BCCT, betaine/carnitine/choline family transporter AS52_02282 PF04294 VanW like protein AS52_02288 PF11181 Heat induced stress protein YflT AS52_02290 PF16124 RecQ zinc-binding AS52_02290 PF00270 DEAD/DEAH box helicase AS52_02290 PF09382 RQC domain AS52_02290 PF00570 HRDC domain AS52_02290 PF00271 Helicase conserved C-terminal domain AS52_02291 PF00158 Sigma-54 interaction domain AS52_02292 PF00491 Arginase family AS52_02294 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AS52_02296 PF01040 UbiA prenyltransferase family AS52_02297 PF02272 DHHA1 domain AS52_02297 PF01411 tRNA synthetases class II (A) AS52_02297 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS52_02298 PF01061 ABC-2 type transporter AS52_02299 PF08000 Bacterial PH domain AS52_02300 PF07690 Major Facilitator Superfamily AS52_02301 PF03466 LysR substrate binding domain AS52_02301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_02302 PF00392 Bacterial regulatory proteins, gntR family AS52_02303 PF00005 ABC transporter AS52_02305 PF08281 Sigma-70, region 4 AS52_02305 PF04542 Sigma-70 region 2 AS52_02307 PF00817 impB/mucB/samB family AS52_02307 PF11799 impB/mucB/samB family C-terminal domain AS52_02307 PF11798 IMS family HHH motif AS52_02308 PF02566 OsmC-like protein AS52_02309 PF01047 MarR family AS52_02313 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) AS52_02315 PF06725 3D domain AS52_02315 PF01476 LysM domain AS52_02319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02319 PF00989 PAS fold AS52_02319 PF13188 PAS domain AS52_02319 PF00512 His Kinase A (phospho-acceptor) domain AS52_02319 PF13426 PAS domain AS52_02320 PF03807 NADP oxidoreductase coenzyme F420-dependent AS52_02320 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS52_02321 PF01472 PUA domain AS52_02321 PF00696 Amino acid kinase family AS52_02322 PF00171 Aldehyde dehydrogenase family AS52_02325 PF03737 Aldolase/RraA AS52_02328 PF03176 MMPL family AS52_02330 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_02331 PF03631 Virulence factor BrkB AS52_02333 PF07859 alpha/beta hydrolase fold AS52_02340 PF01850 PIN domain AS52_02342 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_02344 PF01740 STAS domain AS52_02345 PF11755 Protein of unknown function (DUF3311) AS52_02346 PF00474 Sodium:solute symporter family AS52_02348 PF11490 DNA polymerase III polC-type N-terminus II AS52_02348 PF00929 Exonuclease AS52_02348 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS52_02348 PF02811 PHP domain AS52_02348 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS52_02348 PF14480 DNA polymerase III polC-type N-terminus I AS52_02348 PF14579 Helix-hairpin-helix motif AS52_02350 PF05547 Immune inhibitor A peptidase M6 AS52_02351 PF00206 Lyase AS52_02351 PF10415 Fumarase C C-terminus AS52_02353 PF01471 Putative peptidoglycan binding domain AS52_02353 PF01183 Glycosyl hydrolases family 25 AS52_02355 PF13188 PAS domain AS52_02355 PF00989 PAS fold AS52_02355 PF00512 His Kinase A (phospho-acceptor) domain AS52_02355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02355 PF13426 PAS domain AS52_02357 PF07504 Fungalysin/Thermolysin Propeptide Motif AS52_02357 PF02868 Thermolysin metallopeptidase, alpha-helical domain AS52_02357 PF01447 Thermolysin metallopeptidase, catalytic domain AS52_02357 PF03413 Peptidase propeptide and YPEB domain AS52_02359 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS52_02362 PF00881 Nitroreductase family AS52_02364 PF00106 short chain dehydrogenase AS52_02368 PF07687 Peptidase dimerisation domain AS52_02368 PF01546 Peptidase family M20/M25/M40 AS52_02371 PF01596 O-methyltransferase AS52_02372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_02372 PF03466 LysR substrate binding domain AS52_02375 PF00375 Sodium:dicarboxylate symporter family AS52_02376 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AS52_02376 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AS52_02378 PF01266 FAD dependent oxidoreductase AS52_02379 PF10925 Protein of unknown function (DUF2680) AS52_02380 PF08447 PAS fold AS52_02380 PF00989 PAS fold AS52_02380 PF00512 His Kinase A (phospho-acceptor) domain AS52_02380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02382 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_02382 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_02382 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS52_02384 PF13193 AMP-binding enzyme C-terminal domain AS52_02384 PF00501 AMP-binding enzyme AS52_02385 PF00440 Bacterial regulatory proteins, tetR family AS52_02385 PF16925 Tetracyclin repressor-like, C-terminal domain AS52_02386 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AS52_02386 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AS52_02387 PF00378 Enoyl-CoA hydratase/isomerase AS52_02390 PF04029 2-phosphosulpholactate phosphatase AS52_02391 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS52_02391 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_02391 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_02393 PF00378 Enoyl-CoA hydratase/isomerase AS52_02394 PF08659 KR domain AS52_02394 PF16197 Ketoacyl-synthetase C-terminal extension AS52_02394 PF00550 Phosphopantetheine attachment site AS52_02394 PF00698 Acyl transferase domain AS52_02394 PF00109 Beta-ketoacyl synthase, N-terminal domain AS52_02394 PF14765 Polyketide synthase dehydratase AS52_02394 PF02801 Beta-ketoacyl synthase, C-terminal domain AS52_02394 PF08240 Alcohol dehydrogenase GroES-like domain AS52_02395 PF01680 SOR/SNZ family AS52_02398 PF01144 Coenzyme A transferase AS52_02399 PF01144 Coenzyme A transferase AS52_02400 PF00108 Thiolase, N-terminal domain AS52_02400 PF02803 Thiolase, C-terminal domain AS52_02401 PF00202 Aminotransferase class-III AS52_02403 PF00171 Aldehyde dehydrogenase family AS52_02406 PF12544 Lysine-2,3-aminomutase AS52_02407 PF14122 YokU-like protein, putative antitoxin AS52_02408 PF00324 Amino acid permease AS52_02409 PF00753 Metallo-beta-lactamase superfamily AS52_02411 PF00583 Acetyltransferase (GNAT) family AS52_02412 PF00465 Iron-containing alcohol dehydrogenase AS52_02413 PF07690 Major Facilitator Superfamily AS52_02415 PF12833 Helix-turn-helix domain AS52_02416 PF02525 Flavodoxin-like fold AS52_02417 PF01820 D-ala D-ala ligase N-terminus AS52_02417 PF07478 D-ala D-ala ligase C-terminus AS52_02418 PF07486 Cell Wall Hydrolase AS52_02420 PF16347 Domain of unknown function (DUF4976) AS52_02420 PF00884 Sulfatase AS52_02421 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS52_02421 PF03129 Anticodon binding domain AS52_02421 PF02824 TGS domain AS52_02421 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS52_02423 PF13520 Amino acid permease AS52_02424 PF07690 Major Facilitator Superfamily AS52_02425 PF01047 MarR family AS52_02426 PF03176 MMPL family AS52_02428 PF13426 PAS domain AS52_02428 PF01740 STAS domain AS52_02429 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AS52_02430 PF01022 Bacterial regulatory protein, arsR family AS52_02433 PF12697 Alpha/beta hydrolase family AS52_02435 PF08450 SMP-30/Gluconolactonase/LRE-like region AS52_02436 PF01152 Bacterial-like globin AS52_02437 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AS52_02437 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AS52_02438 PF05675 Protein of unknown function (DUF817) AS52_02440 PF00183 Hsp90 protein AS52_02441 PF01842 ACT domain AS52_02441 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS52_02441 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS52_02447 PF13291 ACT domain AS52_02447 PF04607 Region found in RelA / SpoT proteins AS52_02447 PF02824 TGS domain AS52_02448 PF01183 Glycosyl hydrolases family 25 AS52_02448 PF01471 Putative peptidoglycan binding domain AS52_02450 PF00892 EamA-like transporter family AS52_02451 PF00155 Aminotransferase class I and II AS52_02451 PF00392 Bacterial regulatory proteins, gntR family AS52_02455 PF13091 PLD-like domain AS52_02456 PF14864 Alkyl sulfatase C-terminal AS52_02456 PF00753 Metallo-beta-lactamase superfamily AS52_02456 PF14863 Alkyl sulfatase dimerisation AS52_02458 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AS52_02458 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS52_02467 PF01497 Periplasmic binding protein AS52_02468 PF07977 FabA-like domain AS52_02470 PF00293 NUDIX domain AS52_02471 PF13460 NAD(P)H-binding AS52_02472 PF00501 AMP-binding enzyme AS52_02472 PF13193 AMP-binding enzyme C-terminal domain AS52_02473 PF01047 MarR family AS52_02474 PF04294 VanW like protein AS52_02475 PF00501 AMP-binding enzyme AS52_02475 PF13193 AMP-binding enzyme C-terminal domain AS52_02485 PF00282 Pyridoxal-dependent decarboxylase conserved domain AS52_02488 PF03764 Elongation factor G, domain IV AS52_02488 PF00679 Elongation factor G C-terminus AS52_02488 PF14492 Elongation Factor G, domain II AS52_02488 PF00009 Elongation factor Tu GTP binding domain AS52_02490 PF01226 Formate/nitrite transporter AS52_02491 PF10057 Uncharacterized conserved protein (DUF2294) AS52_02494 PF07690 Major Facilitator Superfamily AS52_02495 PF01565 FAD binding domain AS52_02497 PF02743 Cache domain AS52_02497 PF00672 HAMP domain AS52_02497 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS52_02499 PF12850 Calcineurin-like phosphoesterase superfamily domain AS52_02501 PF00149 Calcineurin-like phosphoesterase AS52_02502 PF03167 Uracil DNA glycosylase superfamily AS52_02503 PF00877 NlpC/P60 family AS52_02504 PF02602 Uroporphyrinogen-III synthase HemD AS52_02505 PF09339 IclR helix-turn-helix domain AS52_02505 PF01614 Bacterial transcriptional regulator AS52_02506 PF00289 Biotin carboxylase, N-terminal domain AS52_02506 PF02785 Biotin carboxylase C-terminal domain AS52_02506 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS52_02507 PF00364 Biotin-requiring enzyme AS52_02508 PF02626 Carboxyltransferase domain, subdomain A and B AS52_02509 PF02682 Carboxyltransferase domain, subdomain C and D AS52_02510 PF07286 Protein of unknown function (DUF1445) AS52_02511 PF01566 Natural resistance-associated macrophage protein AS52_02512 PF03746 LamB/YcsF family AS52_02513 PF00128 Alpha amylase, catalytic domain AS52_02513 PF11941 Domain of unknown function (DUF3459) AS52_02514 PF08502 LeuA allosteric (dimerisation) domain AS52_02514 PF00682 HMGL-like AS52_02520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02520 PF00512 His Kinase A (phospho-acceptor) domain AS52_02521 PF00486 Transcriptional regulatory protein, C terminal AS52_02521 PF00072 Response regulator receiver domain AS52_02532 PF01098 Cell cycle protein AS52_02535 PF04542 Sigma-70 region 2 AS52_02535 PF08281 Sigma-70, region 4 AS52_02539 PF00501 AMP-binding enzyme AS52_02539 PF13193 AMP-binding enzyme C-terminal domain AS52_02540 PF02632 BioY family AS52_02541 PF02803 Thiolase, C-terminal domain AS52_02541 PF00108 Thiolase, N-terminal domain AS52_02543 PF04434 SWIM zinc finger AS52_02543 PF00176 SNF2 family N-terminal domain AS52_02543 PF00271 Helicase conserved C-terminal domain AS52_02545 PF03358 NADPH-dependent FMN reductase AS52_02546 PF00196 Bacterial regulatory proteins, luxR family AS52_02546 PF00072 Response regulator receiver domain AS52_02547 PF13185 GAF domain AS52_02547 PF07730 Histidine kinase AS52_02551 PF13536 Putative multidrug resistance efflux transporter AS52_02553 PF13673 Acetyltransferase (GNAT) domain AS52_02554 PF00920 Dehydratase family AS52_02555 PF12146 Serine aminopeptidase, S33 AS52_02556 PF02833 DHHA2 domain AS52_02556 PF01368 DHH family AS52_02560 PF01063 Amino-transferase class IV AS52_02562 PF01553 Acyltransferase AS52_02563 PF00860 Permease family AS52_02564 PF09349 OHCU decarboxylase AS52_02564 PF01014 Uricase AS52_02565 PF00576 HIUase/Transthyretin family AS52_02566 PF13302 Acetyltransferase (GNAT) domain AS52_02569 PF01566 Natural resistance-associated macrophage protein AS52_02573 PF01047 MarR family AS52_02575 PF00589 Phage integrase family AS52_02575 PF02899 Phage integrase, N-terminal SAM-like domain AS52_02578 PF13520 Amino acid permease AS52_02579 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AS52_02580 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AS52_02581 PF06277 Ethanolamine utilisation protein EutA AS52_02582 PF09515 Thiamine transporter protein (Thia_YuaJ) AS52_02583 PF00324 Amino acid permease AS52_02585 PF00583 Acetyltransferase (GNAT) family AS52_02586 PF00857 Isochorismatase family AS52_02588 PF08892 YqcI/YcgG family AS52_02589 PF01810 LysE type translocator AS52_02590 PF00561 alpha/beta hydrolase fold AS52_02590 PF08386 TAP-like protein AS52_02591 PF03989 DNA gyrase C-terminal domain, beta-propeller AS52_02591 PF00521 DNA gyrase/topoisomerase IV, subunit A AS52_02592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02592 PF00204 DNA gyrase B AS52_02592 PF00986 DNA gyrase B subunit, carboxyl terminus AS52_02592 PF01751 Toprim domain AS52_02593 PF13380 CoA binding domain AS52_02594 PF02660 Glycerol-3-phosphate acyltransferase AS52_02595 PF01521 Iron-sulphur cluster biosynthesis AS52_02596 PF03061 Thioesterase superfamily AS52_02600 PF08177 Small acid-soluble spore protein N family AS52_02602 PF00578 AhpC/TSA family AS52_02603 PF00330 Aconitase family (aconitate hydratase) AS52_02603 PF00694 Aconitase C-terminal domain AS52_02605 PF08179 Small acid-soluble spore protein P family AS52_02606 PF00011 Hsp20/alpha crystallin family AS52_02607 PF02735 Ku70/Ku80 beta-barrel domain AS52_02624 PF01066 CDP-alcohol phosphatidyltransferase AS52_02627 PF07690 Major Facilitator Superfamily AS52_02628 PF04463 Protein of unknown function (DUF523) AS52_02629 PF03780 Asp23 family, cell envelope-related function AS52_02632 PF03631 Virulence factor BrkB AS52_02634 PF01235 Sodium:alanine symporter family AS52_02635 PF07690 Major Facilitator Superfamily AS52_02637 PF07690 Major Facilitator Superfamily AS52_02638 PF13411 MerR HTH family regulatory protein AS52_02640 PF00484 Carbonic anhydrase AS52_02641 PF01740 STAS domain AS52_02641 PF00916 Sulfate permease family AS52_02642 PF00072 Response regulator receiver domain AS52_02642 PF00486 Transcriptional regulatory protein, C terminal AS52_02643 PF00672 HAMP domain AS52_02643 PF13426 PAS domain AS52_02643 PF00512 His Kinase A (phospho-acceptor) domain AS52_02643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02645 PF09346 SMI1 / KNR4 family (SUKH-1) AS52_02646 PF13520 Amino acid permease AS52_02648 PF07454 Stage II sporulation protein P (SpoIIP) AS52_02649 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AS52_02649 PF12557 Cob(I)alamin adenosyltransferase N terminal AS52_02651 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_02652 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AS52_02652 PF07685 CobB/CobQ-like glutamine amidotransferase domain AS52_02653 PF11761 Cobalamin biosynthesis central region AS52_02653 PF11760 Cobalamin synthesis G N-terminal AS52_02653 PF01890 Cobalamin synthesis G C-terminus AS52_02654 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_02655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_02656 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_02657 PF01888 CbiD AS52_02658 PF02570 Precorrin-8X methylmutase AS52_02659 PF02571 Precorrin-6x reductase CbiJ/CobK AS52_02660 PF01903 CbiX AS52_02661 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_02661 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS52_02665 PF05343 M42 glutamyl aminopeptidase AS52_02666 PF00375 Sodium:dicarboxylate symporter family AS52_02667 PF05525 Branched-chain amino acid transport protein AS52_02670 PF00909 Ammonium Transporter Family AS52_02672 PF07849 Protein of unknown function (DUF1641) AS52_02673 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_02674 PF03547 Membrane transport protein AS52_02675 PF00390 Malic enzyme, N-terminal domain AS52_02675 PF03949 Malic enzyme, NAD binding domain AS52_02676 PF01546 Peptidase family M20/M25/M40 AS52_02677 PF07690 Major Facilitator Superfamily AS52_02681 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AS52_02682 PF02441 Flavoprotein AS52_02683 PF03466 LysR substrate binding domain AS52_02683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_02684 PF03547 Membrane transport protein AS52_02688 PF00296 Luciferase-like monooxygenase AS52_02689 PF02754 Cysteine-rich domain AS52_02689 PF13183 4Fe-4S dicluster domain AS52_02690 PF01565 FAD binding domain AS52_02690 PF02913 FAD linked oxidases, C-terminal domain AS52_02691 PF17853 GGDEF-like domain AS52_02691 PF13556 PucR C-terminal helix-turn-helix domain AS52_02691 PF05651 Putative sugar diacid recognition AS52_02692 PF01965 DJ-1/PfpI family AS52_02695 PF00465 Iron-containing alcohol dehydrogenase AS52_02698 PF00005 ABC transporter AS52_02699 PF13492 GAF domain AS52_02699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_02699 PF07730 Histidine kinase AS52_02699 PF13185 GAF domain AS52_02700 PF00196 Bacterial regulatory proteins, luxR family AS52_02700 PF00072 Response regulator receiver domain AS52_02701 PF07687 Peptidase dimerisation domain AS52_02701 PF01546 Peptidase family M20/M25/M40 AS52_02707 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AS52_02708 PF00296 Luciferase-like monooxygenase AS52_02710 PF09335 SNARE associated Golgi protein AS52_02711 PF04493 Endonuclease V AS52_02712 PF03009 Glycerophosphoryl diester phosphodiesterase family AS52_02713 PF00795 Carbon-nitrogen hydrolase AS52_02713 PF00583 Acetyltransferase (GNAT) family AS52_02714 PF00158 Sigma-54 interaction domain AS52_02715 PF00795 Carbon-nitrogen hydrolase AS52_02716 PF00324 Amino acid permease AS52_02741 PF04634 Protein of unknown function, DUF600 AS52_02747 PF14431 YwqJ-like deaminase AS52_02747 PF04740 LXG domain of WXG superfamily AS52_02747 PF14449 Pre-toxin TG AS52_02750 PF14431 YwqJ-like deaminase AS52_02750 PF04740 LXG domain of WXG superfamily AS52_02750 PF14449 Pre-toxin TG AS52_02752 PF14431 YwqJ-like deaminase AS52_02752 PF14449 Pre-toxin TG AS52_02752 PF04740 LXG domain of WXG superfamily AS52_02755 PF01554 MatE AS52_02758 PF01047 MarR family AS52_02759 PF03372 Endonuclease/Exonuclease/phosphatase family AS52_02761 PF03928 Haem-degrading AS52_02762 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AS52_02762 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AS52_02763 PF08220 DeoR-like helix-turn-helix domain AS52_02763 PF00455 DeoR C terminal sensor domain AS52_02764 PF05816 Toxic anion resistance protein (TelA) AS52_02765 PF14266 Putative component of 'biosynthetic module' AS52_02766 PF02342 TerD domain AS52_02767 PF02342 TerD domain AS52_02768 PF02342 TerD domain AS52_02769 PF00149 Calcineurin-like phosphoesterase AS52_02769 PF02872 5'-nucleotidase, C-terminal domain AS52_02771 PF12679 ABC-2 family transporter protein AS52_02772 PF00005 ABC transporter AS52_02774 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AS52_02774 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS52_02775 PF00313 'Cold-shock' DNA-binding domain AS52_02776 PF00392 Bacterial regulatory proteins, gntR family AS52_02776 PF00155 Aminotransferase class I and II AS52_02777 PF00205 Thiamine pyrophosphate enzyme, central domain AS52_02777 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_02777 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS52_02778 PF00313 'Cold-shock' DNA-binding domain AS52_02785 PF00107 Zinc-binding dehydrogenase AS52_02785 PF08240 Alcohol dehydrogenase GroES-like domain AS52_02786 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AS52_02786 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AS52_02787 PF00072 Response regulator receiver domain AS52_02787 PF04397 LytTr DNA-binding domain AS52_02788 PF04239 Protein of unknown function (DUF421) AS52_02789 PF07690 Major Facilitator Superfamily AS52_02790 PF01476 LysM domain AS52_02790 PF06725 3D domain AS52_02791 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS52_02791 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS52_02796 PF03575 Peptidase family S51 AS52_02798 PF00133 tRNA synthetases class I (I, L, M and V) AS52_02798 PF08264 Anticodon-binding domain of tRNA AS52_02799 PF01565 FAD binding domain AS52_02799 PF08031 Berberine and berberine like AS52_02802 PF07348 Syd protein (SUKH-2) AS52_02805 PF07348 Syd protein (SUKH-2) AS52_02807 PF01734 Patatin-like phospholipase AS52_02810 PF01636 Phosphotransferase enzyme family AS52_02811 PF11975 Family 4 glycosyl hydrolase C-terminal domain AS52_02811 PF02056 Family 4 glycosyl hydrolase AS52_02812 PF02378 Phosphotransferase system, EIIC AS52_02813 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AS52_02817 PF06039 Malate:quinone oxidoreductase (Mqo) AS52_02834 PF18593 CdiI immunity protein AS52_02838 PF13332 Hemagglutinin repeat AS52_02838 PF05860 haemagglutination activity domain AS52_02838 PF04829 Pre-toxin domain with VENN motif AS52_02848 PF13332 Hemagglutinin repeat AS52_02848 PF05860 haemagglutination activity domain AS52_02848 PF04829 Pre-toxin domain with VENN motif AS52_02856 PF04740 LXG domain of WXG superfamily AS52_02856 PF14449 Pre-toxin TG AS52_02862 PF11975 Family 4 glycosyl hydrolase C-terminal domain AS52_02862 PF02056 Family 4 glycosyl hydrolase AS52_02868 PF01938 TRAM domain AS52_02868 PF05958 tRNA (Uracil-5-)-methyltransferase AS52_02871 PF13419 Haloacid dehalogenase-like hydrolase AS52_02872 PF00561 alpha/beta hydrolase fold AS52_02873 PF02595 Glycerate kinase family AS52_02874 PF02447 GntP family permease AS52_02875 PF13556 PucR C-terminal helix-turn-helix domain AS52_02875 PF05651 Putative sugar diacid recognition AS52_02875 PF17853 GGDEF-like domain AS52_02876 PF00465 Iron-containing alcohol dehydrogenase AS52_02877 PF05656 Protein of unknown function (DUF805) AS52_02882 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS52_02883 PF00296 Luciferase-like monooxygenase AS52_02884 PF05656 Protein of unknown function (DUF805) AS52_02885 PF05656 Protein of unknown function (DUF805) AS52_02888 PF02293 AmiS/UreI family transporter AS52_02889 PF01773 Na+ dependent nucleoside transporter N-terminus AS52_02889 PF07662 Na+ dependent nucleoside transporter C-terminus AS52_02890 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS52_02891 PF01791 DeoC/LacD family aldolase AS52_02892 PF02885 Glycosyl transferase family, helical bundle domain AS52_02892 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AS52_02892 PF00591 Glycosyl transferase family, a/b domain AS52_02894 PF04198 Putative sugar-binding domain AS52_02899 PF02660 Glycerol-3-phosphate acyltransferase AS52_02901 PF03551 Transcriptional regulator PadR-like family AS52_02902 PF01435 Peptidase family M48 AS52_02903 PF00753 Metallo-beta-lactamase superfamily AS52_02904 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AS52_02906 PF01547 Bacterial extracellular solute-binding protein AS52_02907 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02908 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02909 PF00106 short chain dehydrogenase AS52_02910 PF02667 Short chain fatty acid transporter AS52_02914 PF09587 Bacterial capsule synthesis protein PGA_cap AS52_02915 PF04143 Sulphur transport AS52_02918 PF00465 Iron-containing alcohol dehydrogenase AS52_02919 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_02919 PF03466 LysR substrate binding domain AS52_02923 PF00583 Acetyltransferase (GNAT) family AS52_02924 PF07690 Major Facilitator Superfamily AS52_02925 PF07690 Major Facilitator Superfamily AS52_02932 PF08240 Alcohol dehydrogenase GroES-like domain AS52_02932 PF00107 Zinc-binding dehydrogenase AS52_02933 PF00392 Bacterial regulatory proteins, gntR family AS52_02933 PF07729 FCD domain AS52_02937 PF00999 Sodium/hydrogen exchanger family AS52_02938 PF00571 CBS domain AS52_02938 PF03471 Transporter associated domain AS52_02938 PF01595 Cyclin M transmembrane N-terminal domain AS52_02940 PF10011 Predicted membrane protein (DUF2254) AS52_02942 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AS52_02942 PF00005 ABC transporter AS52_02943 PF00005 ABC transporter AS52_02944 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02945 PF00528 Binding-protein-dependent transport system inner membrane component AS52_02946 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS52_02948 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_02948 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_02952 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_02952 PF03466 LysR substrate binding domain AS52_02953 PF00892 EamA-like transporter family AS52_02954 PF00565 Staphylococcal nuclease homologue AS52_02956 PF06039 Malate:quinone oxidoreductase (Mqo) AS52_02957 PF03618 Kinase/pyrophosphorylase AS52_02961 PF00924 Mechanosensitive ion channel AS52_02968 PF02073 Thermophilic metalloprotease (M29) AS52_02969 PF01614 Bacterial transcriptional regulator AS52_02969 PF09339 IclR helix-turn-helix domain AS52_02970 PF01557 Fumarylacetoacetate (FAA) hydrolase family AS52_02971 PF01274 Malate synthase AS52_02972 PF01565 FAD binding domain AS52_02972 PF02913 FAD linked oxidases, C-terminal domain AS52_02973 PF13183 4Fe-4S dicluster domain AS52_02973 PF02754 Cysteine-rich domain AS52_02974 PF02913 FAD linked oxidases, C-terminal domain AS52_02974 PF01565 FAD binding domain AS52_02975 PF02652 L-lactate permease AS52_02977 PF07690 Major Facilitator Superfamily AS52_02978 PF00795 Carbon-nitrogen hydrolase AS52_02980 PF00392 Bacterial regulatory proteins, gntR family AS52_02980 PF07729 FCD domain AS52_02983 PF10997 Alternate to MurJ AS52_02984 PF12679 ABC-2 family transporter protein AS52_02985 PF13732 Domain of unknown function (DUF4162) AS52_02985 PF00005 ABC transporter AS52_02986 PF13396 Phospholipase_D-nuclease N-terminal AS52_02989 PF08281 Sigma-70, region 4 AS52_02989 PF04542 Sigma-70 region 2 AS52_02992 PF10676 Spore germination protein gerPA/gerPF AS52_02994 PF05360 yiaA/B two helix domain AS52_02996 PF12146 Serine aminopeptidase, S33 AS52_02997 PF00296 Luciferase-like monooxygenase AS52_02998 PF01740 STAS domain AS52_02999 PF01544 CorA-like Mg2+ transporter protein AS52_03002 PF04239 Protein of unknown function (DUF421) AS52_03003 PF02557 D-alanyl-D-alanine carboxypeptidase AS52_03005 PF00512 His Kinase A (phospho-acceptor) domain AS52_03005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03005 PF00989 PAS fold AS52_03005 PF16736 Single Cache-like AS52_03006 PF00072 Response regulator receiver domain AS52_03006 PF00486 Transcriptional regulatory protein, C terminal AS52_03007 PF01494 FAD binding domain AS52_03010 PF00364 Biotin-requiring enzyme AS52_03010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS52_03010 PF02817 e3 binding domain AS52_03011 PF16870 2-oxoglutarate dehydrogenase C-terminal AS52_03011 PF00676 Dehydrogenase E1 component AS52_03011 PF02779 Transketolase, pyrimidine binding domain AS52_03013 PF07690 Major Facilitator Superfamily AS52_03014 PF02566 OsmC-like protein AS52_03016 PF04235 Protein of unknown function (DUF418) AS52_03026 PF00005 ABC transporter AS52_03027 PF00005 ABC transporter AS52_03027 PF12399 Branched-chain amino acid ATP-binding cassette transporter AS52_03028 PF02653 Branched-chain amino acid transport system / permease component AS52_03028 PF11862 Domain of unknown function (DUF3382) AS52_03029 PF02653 Branched-chain amino acid transport system / permease component AS52_03030 PF13458 Periplasmic binding protein AS52_03031 PF00543 Nitrogen regulatory protein P-II AS52_03032 PF00909 Ammonium Transporter Family AS52_03033 PF03806 AbgT putative transporter family AS52_03036 PF00561 alpha/beta hydrolase fold AS52_03039 PF04229 GrpB protein AS52_03039 PF13673 Acetyltransferase (GNAT) domain AS52_03040 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_03040 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AS52_03040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_03043 PF10676 Spore germination protein gerPA/gerPF AS52_03044 PF10676 Spore germination protein gerPA/gerPF AS52_03048 PF00005 ABC transporter AS52_03049 PF01032 FecCD transport family AS52_03050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AS52_03050 PF07685 CobB/CobQ-like glutamine amidotransferase domain AS52_03053 PF13520 Amino acid permease AS52_03057 PF01380 SIS domain AS52_03059 PF00356 Bacterial regulatory proteins, lacI family AS52_03061 PF07690 Major Facilitator Superfamily AS52_03062 PF00294 pfkB family carbohydrate kinase AS52_03065 PF01593 Flavin containing amine oxidoreductase AS52_03066 PF00535 Glycosyl transferase family 2 AS52_03070 PF13386 Cytochrome C biogenesis protein transmembrane region AS52_03071 PF01774 UreD urease accessory protein AS52_03072 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS52_03073 PF01730 UreF AS52_03074 PF02814 UreE urease accessory protein, N-terminal domain AS52_03074 PF05194 UreE urease accessory protein, C-terminal domain AS52_03075 PF00449 Urease alpha-subunit, N-terminal domain AS52_03075 PF01979 Amidohydrolase family AS52_03076 PF00699 Urease beta subunit AS52_03077 PF00547 Urease, gamma subunit AS52_03078 PF02885 Glycosyl transferase family, helical bundle domain AS52_03078 PF00591 Glycosyl transferase family, a/b domain AS52_03079 PF01476 LysM domain AS52_03079 PF00877 NlpC/P60 family AS52_03080 PF01476 LysM domain AS52_03080 PF06725 3D domain AS52_03081 PF00881 Nitroreductase family AS52_03082 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AS52_03083 PF09335 SNARE associated Golgi protein AS52_03085 PF01738 Dienelactone hydrolase family AS52_03086 PF00912 Transglycosylase AS52_03086 PF00905 Penicillin binding protein transpeptidase domain AS52_03087 PF01943 Polysaccharide biosynthesis protein AS52_03088 PF00892 EamA-like transporter family AS52_03089 PF00155 Aminotransferase class I and II AS52_03089 PF00392 Bacterial regulatory proteins, gntR family AS52_03093 PF00664 ABC transporter transmembrane region AS52_03093 PF00005 ABC transporter AS52_03098 PF05908 Poly-gamma-glutamate hydrolase AS52_03101 PF00210 Ferritin-like domain AS52_03103 PF07875 Coat F domain AS52_03104 PF01595 Cyclin M transmembrane N-terminal domain AS52_03104 PF00571 CBS domain AS52_03104 PF03471 Transporter associated domain AS52_03107 PF00478 IMP dehydrogenase / GMP reductase domain AS52_03107 PF00571 CBS domain AS52_03108 PF10503 Esterase PHB depolymerase AS52_03109 PF00355 Rieske [2Fe-2S] domain AS52_03109 PF01266 FAD dependent oxidoreductase AS52_03111 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS52_03112 PF02153 Prephenate dehydrogenase AS52_03112 PF01842 ACT domain AS52_03113 PF01264 Chorismate synthase AS52_03114 PF00793 DAHP synthetase I family AS52_03114 PF01817 Chorismate mutase type II AS52_03116 PF02417 Chromate transporter AS52_03117 PF02417 Chromate transporter AS52_03119 PF00266 Aminotransferase class-V AS52_03120 PF01546 Peptidase family M20/M25/M40 AS52_03121 PF13556 PucR C-terminal helix-turn-helix domain AS52_03121 PF17853 GGDEF-like domain AS52_03121 PF07905 Purine catabolism regulatory protein-like family AS52_03122 PF01910 Thiamine-binding protein AS52_03123 PF00877 NlpC/P60 family AS52_03123 PF01476 LysM domain AS52_03124 PF06628 Catalase-related immune-responsive AS52_03124 PF00199 Catalase AS52_03127 PF00209 Sodium:neurotransmitter symporter family AS52_03136 PF01925 Sulfite exporter TauE/SafE AS52_03137 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS52_03138 PF10502 Signal peptidase, peptidase S26 AS52_03140 PF02702 Osmosensitive K+ channel His kinase sensor domain AS52_03141 PF02669 K+-transporting ATPase, c chain AS52_03143 PF03814 Potassium-transporting ATPase A subunit AS52_03145 PF03033 Glycosyltransferase family 28 N-terminal domain AS52_03145 PF04101 Glycosyltransferase family 28 C-terminal domain AS52_03147 PF01022 Bacterial regulatory protein, arsR family AS52_03149 PF00881 Nitroreductase family AS52_03152 PF04229 GrpB protein AS52_03153 PF08239 Bacterial SH3 domain AS52_03153 PF01520 N-acetylmuramoyl-L-alanine amidase AS52_03154 PF00253 Ribosomal protein S14p/S29e AS52_03155 PF18277 AbrB C-terminal domain AS52_03155 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AS52_03156 PF05163 DinB family AS52_03157 PF01938 TRAM domain AS52_03157 PF05958 tRNA (Uracil-5-)-methyltransferase AS52_03160 PF02277 Phosphoribosyltransferase AS52_03161 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_03161 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_03164 PF07690 Major Facilitator Superfamily AS52_03165 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_03165 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_03166 PF00781 Diacylglycerol kinase catalytic domain AS52_03168 PF00285 Citrate synthase, C-terminal domain AS52_03169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03169 PF03466 LysR substrate binding domain AS52_03172 PF13426 PAS domain AS52_03172 PF01740 STAS domain AS52_03173 PF01740 STAS domain AS52_03179 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain AS52_03179 PF01740 STAS domain AS52_03180 PF04226 Transglycosylase associated protein AS52_03183 PF00574 Clp protease AS52_03186 PF10415 Fumarase C C-terminus AS52_03186 PF00206 Lyase AS52_03187 PF17763 Glutaminase/Asparaginase C-terminal domain AS52_03187 PF00710 Asparaginase, N-terminal AS52_03188 PF01381 Helix-turn-helix AS52_03196 PF13520 Amino acid permease AS52_03197 PF02082 Transcriptional regulator AS52_03201 PF00390 Malic enzyme, N-terminal domain AS52_03201 PF03949 Malic enzyme, NAD binding domain AS52_03202 PF02522 Aminoglycoside 3-N-acetyltransferase AS52_03204 PF13302 Acetyltransferase (GNAT) domain AS52_03207 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AS52_03207 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AS52_03208 PF00258 Flavodoxin AS52_03208 PF00667 FAD binding domain AS52_03208 PF00175 Oxidoreductase NAD-binding domain AS52_03211 PF07690 Major Facilitator Superfamily AS52_03212 PF01047 MarR family AS52_03213 PF07739 TipAS antibiotic-recognition domain AS52_03213 PF13411 MerR HTH family regulatory protein AS52_03214 PF13302 Acetyltransferase (GNAT) domain AS52_03221 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AS52_03226 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS52_03228 PF00873 AcrB/AcrD/AcrF family AS52_03230 PF00440 Bacterial regulatory proteins, tetR family AS52_03231 PF12823 Domain of unknown function (DUF3817) AS52_03233 PF01979 Amidohydrolase family AS52_03235 PF03816 Cell envelope-related transcriptional attenuator domain AS52_03236 PF13302 Acetyltransferase (GNAT) domain AS52_03238 PF02673 Bacitracin resistance protein BacA AS52_03240 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AS52_03241 PF00510 Cytochrome c oxidase subunit III AS52_03242 PF00115 Cytochrome C and Quinol oxidase polypeptide I AS52_03243 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AS52_03250 PF00403 Heavy-metal-associated domain AS52_03251 PF08241 Methyltransferase domain AS52_03254 PF05036 Sporulation related domain AS52_03254 PF01520 N-acetylmuramoyl-L-alanine amidase AS52_03255 PF01810 LysE type translocator AS52_03256 PF13520 Amino acid permease AS52_03261 PF04203 Sortase domain AS52_03262 PF01925 Sulfite exporter TauE/SafE AS52_03263 PF13302 Acetyltransferase (GNAT) domain AS52_03264 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AS52_03266 PF00107 Zinc-binding dehydrogenase AS52_03266 PF16884 N-terminal domain of oxidoreductase AS52_03272 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_03272 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_03275 PF02600 Disulfide bond formation protein DsbB AS52_03276 PF13462 Thioredoxin AS52_03277 PF01435 Peptidase family M48 AS52_03287 PF00440 Bacterial regulatory proteins, tetR family AS52_03288 PF00893 Small Multidrug Resistance protein AS52_03289 PF16658 Class II release factor RF3, C-terminal domain AS52_03289 PF00009 Elongation factor Tu GTP binding domain AS52_03289 PF03144 Elongation factor Tu domain 2 AS52_03290 PF00313 'Cold-shock' DNA-binding domain AS52_03291 PF04239 Protein of unknown function (DUF421) AS52_03294 PF13460 NAD(P)H-binding AS52_03298 PF01497 Periplasmic binding protein AS52_03299 PF00005 ABC transporter AS52_03300 PF01032 FecCD transport family AS52_03301 PF01032 FecCD transport family AS52_03302 PF07486 Cell Wall Hydrolase AS52_03305 PF02525 Flavodoxin-like fold AS52_03306 PF10502 Signal peptidase, peptidase S26 AS52_03312 PF03591 AzlC protein AS52_03313 PF01381 Helix-turn-helix AS52_03313 PF07883 Cupin domain AS52_03314 PF03741 Integral membrane protein TerC family AS52_03315 PF00356 Bacterial regulatory proteins, lacI family AS52_03315 PF13407 Periplasmic binding protein domain AS52_03316 PF02082 Transcriptional regulator AS52_03320 PF00741 Gas vesicle protein AS52_03325 PF00741 Gas vesicle protein AS52_03326 PF05121 Gas vesicle protein K AS52_03326 PF00741 Gas vesicle protein AS52_03327 PF00741 Gas vesicle protein AS52_03330 PF07486 Cell Wall Hydrolase AS52_03331 PF01872 RibD C-terminal domain AS52_03333 PF00667 FAD binding domain AS52_03333 PF00258 Flavodoxin AS52_03333 PF00175 Oxidoreductase NAD-binding domain AS52_03333 PF00067 Cytochrome P450 AS52_03334 PF00440 Bacterial regulatory proteins, tetR family AS52_03334 PF16295 Tetracyclin repressor-like, C-terminal domain AS52_03336 PF05067 Manganese containing catalase AS52_03337 PF12652 CotJB protein AS52_03338 PF11007 Spore coat associated protein JA (CotJA) AS52_03340 PF01810 LysE type translocator AS52_03341 PF02311 AraC-like ligand binding domain AS52_03341 PF12833 Helix-turn-helix domain AS52_03342 PF13492 GAF domain AS52_03342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03342 PF07730 Histidine kinase AS52_03343 PF00072 Response regulator receiver domain AS52_03343 PF00196 Bacterial regulatory proteins, luxR family AS52_03346 PF14040 Deoxyribonuclease NucA/NucB AS52_03350 PF03033 Glycosyltransferase family 28 N-terminal domain AS52_03350 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AS52_03352 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS52_03353 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS52_03353 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS52_03354 PF00456 Transketolase, thiamine diphosphate binding domain AS52_03354 PF02779 Transketolase, pyrimidine binding domain AS52_03354 PF02780 Transketolase, C-terminal domain AS52_03355 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AS52_03355 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AS52_03358 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_03361 PF00005 ABC transporter AS52_03362 PF02687 FtsX-like permease family AS52_03363 PF00672 HAMP domain AS52_03363 PF00512 His Kinase A (phospho-acceptor) domain AS52_03363 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03364 PF00486 Transcriptional regulatory protein, C terminal AS52_03364 PF00072 Response regulator receiver domain AS52_03365 PF02567 Phenazine biosynthesis-like protein AS52_03368 PF00989 PAS fold AS52_03368 PF13188 PAS domain AS52_03368 PF13426 PAS domain AS52_03368 PF00512 His Kinase A (phospho-acceptor) domain AS52_03368 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03369 PF13302 Acetyltransferase (GNAT) domain AS52_03375 PF00248 Aldo/keto reductase family AS52_03377 PF00892 EamA-like transporter family AS52_03380 PF00741 Gas vesicle protein AS52_03381 PF05121 Gas vesicle protein K AS52_03381 PF00741 Gas vesicle protein AS52_03382 PF00741 Gas vesicle protein AS52_03386 PF07728 AAA domain (dynein-related subfamily) AS52_03388 PF00741 Gas vesicle protein AS52_03391 PF00741 Gas vesicle protein AS52_03392 PF09557 Domain of unknown function (DUF2382) AS52_03392 PF11181 Heat induced stress protein YflT AS52_03394 PF00375 Sodium:dicarboxylate symporter family AS52_03395 PF08274 PhnA Zinc-Ribbon AS52_03395 PF03831 PhnA domain AS52_03402 PF13026 Protein of unknown function (DUF3887) AS52_03402 PF12146 Serine aminopeptidase, S33 AS52_03404 PF02910 Fumarate reductase flavoprotein C-term AS52_03404 PF00890 FAD binding domain AS52_03405 PF07690 Major Facilitator Superfamily AS52_03406 PF13302 Acetyltransferase (GNAT) domain AS52_03408 PF01546 Peptidase family M20/M25/M40 AS52_03408 PF07687 Peptidase dimerisation domain AS52_03409 PF00296 Luciferase-like monooxygenase AS52_03410 PF00296 Luciferase-like monooxygenase AS52_03411 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_03411 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS52_03411 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_03412 PF08240 Alcohol dehydrogenase GroES-like domain AS52_03412 PF00107 Zinc-binding dehydrogenase AS52_03413 PF00072 Response regulator receiver domain AS52_03413 PF00486 Transcriptional regulatory protein, C terminal AS52_03414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03415 PF00005 ABC transporter AS52_03416 PF02687 FtsX-like permease family AS52_03418 PF01738 Dienelactone hydrolase family AS52_03419 PF00155 Aminotransferase class I and II AS52_03423 PF01925 Sulfite exporter TauE/SafE AS52_03424 PF01206 Sulfurtransferase TusA AS52_03425 PF00581 Rhodanese-like domain AS52_03425 PF00753 Metallo-beta-lactamase superfamily AS52_03426 PF01206 Sulfurtransferase TusA AS52_03426 PF00581 Rhodanese-like domain AS52_03429 PF13686 DsrE/DsrF/DrsH-like family AS52_03430 PF01206 Sulfurtransferase TusA AS52_03431 PF02583 Metal-sensitive transcriptional repressor AS52_03439 PF00392 Bacterial regulatory proteins, gntR family AS52_03439 PF07702 UTRA domain AS52_03440 PF00232 Glycosyl hydrolase family 1 AS52_03442 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AS52_03443 PF05901 Excalibur calcium-binding domain AS52_03446 PF01810 LysE type translocator AS52_03447 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AS52_03449 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03449 PF03466 LysR substrate binding domain AS52_03450 PF01810 LysE type translocator AS52_03451 PF03466 LysR substrate binding domain AS52_03451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03452 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_03454 PF08448 PAS fold AS52_03454 PF00990 Diguanylate cyclase, GGDEF domain AS52_03455 PF12706 Beta-lactamase superfamily domain AS52_03456 PF13170 Protein of unknown function (DUF4003) AS52_03458 PF00881 Nitroreductase family AS52_03459 PF00171 Aldehyde dehydrogenase family AS52_03462 PF04011 LemA family AS52_03463 PF01522 Polysaccharide deacetylase AS52_03464 PF00535 Glycosyl transferase family 2 AS52_03464 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AS52_03466 PF01638 HxlR-like helix-turn-helix AS52_03467 PF02525 Flavodoxin-like fold AS52_03468 PF02525 Flavodoxin-like fold AS52_03469 PF13302 Acetyltransferase (GNAT) domain AS52_03472 PF00264 Common central domain of tyrosinase AS52_03474 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_03475 PF04299 Putative FMN-binding domain AS52_03480 PF00561 alpha/beta hydrolase fold AS52_03483 PF07308 Protein of unknown function (DUF1456) AS52_03485 PF06874 Firmicute fructose-1,6-bisphosphatase AS52_03486 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_03486 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_03487 PF00313 'Cold-shock' DNA-binding domain AS52_03489 PF00313 'Cold-shock' DNA-binding domain AS52_03490 PF07690 Major Facilitator Superfamily AS52_03491 PF00291 Pyridoxal-phosphate dependent enzyme AS52_03492 PF00375 Sodium:dicarboxylate symporter family AS52_03493 PF03473 MOSC domain AS52_03493 PF03475 3-alpha domain AS52_03494 PF07690 Major Facilitator Superfamily AS52_03495 PF00392 Bacterial regulatory proteins, gntR family AS52_03495 PF07729 FCD domain AS52_03501 PF02126 Phosphotriesterase family AS52_03502 PF01740 STAS domain AS52_03502 PF00916 Sulfate permease family AS52_03504 PF03466 LysR substrate binding domain AS52_03504 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03505 PF00107 Zinc-binding dehydrogenase AS52_03505 PF08240 Alcohol dehydrogenase GroES-like domain AS52_03509 PF00005 ABC transporter AS52_03511 PF02096 60Kd inner membrane protein AS52_03524 PF05139 Erythromycin esterase AS52_03528 PF03992 Antibiotic biosynthesis monooxygenase AS52_03530 PF00561 alpha/beta hydrolase fold AS52_03531 PF13426 PAS domain AS52_03531 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03531 PF00672 HAMP domain AS52_03531 PF00512 His Kinase A (phospho-acceptor) domain AS52_03532 PF00486 Transcriptional regulatory protein, C terminal AS52_03532 PF00072 Response regulator receiver domain AS52_03535 PF00005 ABC transporter AS52_03539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03539 PF03466 LysR substrate binding domain AS52_03542 PF00381 PTS HPr component phosphorylation site AS52_03543 PF00107 Zinc-binding dehydrogenase AS52_03543 PF08240 Alcohol dehydrogenase GroES-like domain AS52_03544 PF13411 MerR HTH family regulatory protein AS52_03547 PF07883 Cupin domain AS52_03551 PF01740 STAS domain AS52_03551 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain AS52_03552 PF00313 'Cold-shock' DNA-binding domain AS52_03555 PF00672 HAMP domain AS52_03555 PF17202 Single cache domain 3 AS52_03555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS52_03556 PF00990 Diguanylate cyclase, GGDEF domain AS52_03556 PF00563 EAL domain AS52_03556 PF13426 PAS domain AS52_03557 PF02557 D-alanyl-D-alanine carboxypeptidase AS52_03561 PF01544 CorA-like Mg2+ transporter protein AS52_03562 PF01740 STAS domain AS52_03569 PF08713 DNA alkylation repair enzyme AS52_03570 PF00583 Acetyltransferase (GNAT) family AS52_03572 PF03845 Spore germination protein AS52_03574 PF07729 FCD domain AS52_03574 PF00392 Bacterial regulatory proteins, gntR family AS52_03578 PF06912 Protein of unknown function (DUF1275) AS52_03580 PF00455 DeoR C terminal sensor domain AS52_03580 PF08220 DeoR-like helix-turn-helix domain AS52_03583 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS52_03583 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS52_03587 PF01810 LysE type translocator AS52_03595 PF08267 Cobalamin-independent synthase, N-terminal domain AS52_03595 PF01717 Cobalamin-independent synthase, Catalytic domain AS52_03598 PF00083 Sugar (and other) transporter AS52_03599 PF02610 L-arabinose isomerase AS52_03599 PF11762 L-arabinose isomerase C-terminal domain AS52_03600 PF00596 Class II Aldolase and Adducin N-terminal domain AS52_03601 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AS52_03601 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AS52_03602 PF00392 Bacterial regulatory proteins, gntR family AS52_03603 PF01966 HD domain AS52_03604 PF02630 SCO1/SenC AS52_03606 PF00005 ABC transporter AS52_03614 PF07670 Nucleoside recognition AS52_03614 PF17910 FeoB cytosolic helical domain AS52_03614 PF07664 Ferrous iron transport protein B C terminus AS52_03614 PF02421 Ferrous iron transport protein B AS52_03615 PF17910 FeoB cytosolic helical domain AS52_03615 PF02421 Ferrous iron transport protein B AS52_03615 PF07670 Nucleoside recognition AS52_03615 PF07664 Ferrous iron transport protein B C terminus AS52_03616 PF04023 FeoA domain AS52_03616 PF07664 Ferrous iron transport protein B C terminus AS52_03616 PF17910 FeoB cytosolic helical domain AS52_03616 PF02421 Ferrous iron transport protein B AS52_03616 PF07670 Nucleoside recognition AS52_03619 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_03620 PF13115 YtkA-like AS52_03622 PF01047 MarR family AS52_03628 PF00892 EamA-like transporter family AS52_03629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03629 PF03466 LysR substrate binding domain AS52_03630 PF00171 Aldehyde dehydrogenase family AS52_03631 PF00877 NlpC/P60 family AS52_03631 PF01476 LysM domain AS52_03632 PF03475 3-alpha domain AS52_03632 PF03473 MOSC domain AS52_03634 PF07662 Na+ dependent nucleoside transporter C-terminus AS52_03634 PF01773 Na+ dependent nucleoside transporter N-terminus AS52_03642 PF08818 Domain of unknown function (DU1801) AS52_03643 PF08818 Domain of unknown function (DU1801) AS52_03659 PF13361 UvrD-like helicase C-terminal domain AS52_03659 PF00580 UvrD/REP helicase N-terminal domain AS52_03659 PF12705 PD-(D/E)XK nuclease superfamily AS52_03670 PF00817 impB/mucB/samB family AS52_03670 PF11799 impB/mucB/samB family C-terminal domain AS52_03670 PF11798 IMS family HHH motif AS52_03680 PF00313 'Cold-shock' DNA-binding domain AS52_03681 PF07690 Major Facilitator Superfamily AS52_03682 PF01022 Bacterial regulatory protein, arsR family AS52_03683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03683 PF03466 LysR substrate binding domain AS52_03685 PF07690 Major Facilitator Superfamily AS52_03687 PF04259 Small, acid-soluble spore protein, gamma-type AS52_03688 PF00107 Zinc-binding dehydrogenase AS52_03688 PF08240 Alcohol dehydrogenase GroES-like domain AS52_03690 PF01638 HxlR-like helix-turn-helix AS52_03695 PF07690 Major Facilitator Superfamily AS52_03696 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS52_03696 PF13378 Enolase C-terminal domain-like AS52_03698 PF00294 pfkB family carbohydrate kinase AS52_03699 PF01614 Bacterial transcriptional regulator AS52_03699 PF09339 IclR helix-turn-helix domain AS52_03700 PF01061 ABC-2 type transporter AS52_03701 PF13732 Domain of unknown function (DUF4162) AS52_03701 PF00005 ABC transporter AS52_03703 PF00857 Isochorismatase family AS52_03704 PF01965 DJ-1/PfpI family AS52_03707 PF13411 MerR HTH family regulatory protein AS52_03707 PF06445 GyrI-like small molecule binding domain AS52_03711 PF02525 Flavodoxin-like fold AS52_03712 PF02378 Phosphotransferase system, EIIC AS52_03712 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS52_03712 PF00367 phosphotransferase system, EIIB AS52_03714 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS52_03714 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS52_03715 PF00692 dUTPase AS52_03716 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS52_03716 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS52_03718 PF00171 Aldehyde dehydrogenase family AS52_03721 PF01055 Glycosyl hydrolases family 31 AS52_03723 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS52_03727 PF04235 Protein of unknown function (DUF418) AS52_03731 PF10502 Signal peptidase, peptidase S26 AS52_03736 PF01381 Helix-turn-helix AS52_03738 PF01037 Lrp/AsnC ligand binding domain AS52_03739 PF00561 alpha/beta hydrolase fold AS52_03742 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AS52_03743 PF00561 alpha/beta hydrolase fold AS52_03745 PF00857 Isochorismatase family AS52_03746 PF03358 NADPH-dependent FMN reductase AS52_03747 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_03754 PF07690 Major Facilitator Superfamily AS52_03756 PF07690 Major Facilitator Superfamily AS52_03757 PF00440 Bacterial regulatory proteins, tetR family AS52_03759 PF06150 ChaB AS52_03760 PF00251 Glycosyl hydrolases family 32 N-terminal domain AS52_03760 PF08244 Glycosyl hydrolases family 32 C terminal AS52_03762 PF00356 Bacterial regulatory proteins, lacI family AS52_03763 PF01306 LacY proton/sugar symporter AS52_03767 PF00465 Iron-containing alcohol dehydrogenase AS52_03776 PF02517 CPBP intramembrane metalloprotease AS52_03778 PF00155 Aminotransferase class I and II AS52_03780 PF13649 Methyltransferase domain AS52_03781 PF00367 phosphotransferase system, EIIB AS52_03781 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS52_03781 PF02378 Phosphotransferase system, EIIC AS52_03782 PF00710 Asparaginase, N-terminal AS52_03782 PF17763 Glutaminase/Asparaginase C-terminal domain AS52_03785 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AS52_03785 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS52_03788 PF03551 Transcriptional regulator PadR-like family AS52_03790 PF01569 PAP2 superfamily AS52_03791 PF18719 ArlS sensor domain AS52_03791 PF00512 His Kinase A (phospho-acceptor) domain AS52_03791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03792 PF00486 Transcriptional regulatory protein, C terminal AS52_03792 PF00072 Response regulator receiver domain AS52_03793 PF00486 Transcriptional regulatory protein, C terminal AS52_03793 PF00072 Response regulator receiver domain AS52_03796 PF03466 LysR substrate binding domain AS52_03796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03798 PF07690 Major Facilitator Superfamily AS52_03799 PF12464 Maltose acetyltransferase AS52_03799 PF14602 Hexapeptide repeat of succinyl-transferase AS52_03802 PF01381 Helix-turn-helix AS52_03810 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_03813 PF00665 Integrase core domain AS52_03813 PF13333 Integrase core domain AS52_03813 PF13276 HTH-like domain AS52_03816 PF12867 DinB superfamily AS52_03821 PF02659 Putative manganese efflux pump AS52_03822 PF06803 Protein of unknown function (DUF1232) AS52_03825 PF06445 GyrI-like small molecule binding domain AS52_03825 PF12833 Helix-turn-helix domain AS52_03830 PF00994 Probable molybdopterin binding domain AS52_03830 PF03453 MoeA N-terminal region (domain I and II) AS52_03830 PF03454 MoeA C-terminal region (domain IV) AS52_03831 PF01967 MoaC family AS52_03832 PF00994 Probable molybdopterin binding domain AS52_03833 PF00174 Oxidoreductase molybdopterin binding domain AS52_03840 PF14172 Domain of unknown function (DUF4309) AS52_03843 PF04303 PrpF protein AS52_03844 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03844 PF03466 LysR substrate binding domain AS52_03845 PF03600 Citrate transporter AS52_03850 PF01027 Inhibitor of apoptosis-promoting Bax1 AS52_03851 PF00574 Clp protease AS52_03854 PF00877 NlpC/P60 family AS52_03855 PF07690 Major Facilitator Superfamily AS52_03856 PF01047 MarR family AS52_03858 PF08281 Sigma-70, region 4 AS52_03858 PF04542 Sigma-70 region 2 AS52_03860 PF00313 'Cold-shock' DNA-binding domain AS52_03862 PF09680 Family of unknown function AS52_03863 PF00324 Amino acid permease AS52_03864 PF00324 Amino acid permease AS52_03865 PF00171 Aldehyde dehydrogenase family AS52_03866 PF01619 Proline dehydrogenase AS52_03867 PF09234 Domain of unknown function (DUF1963) AS52_03871 PF07454 Stage II sporulation protein P (SpoIIP) AS52_03872 PF00563 EAL domain AS52_03872 PF03707 Bacterial signalling protein N terminal repeat AS52_03872 PF00990 Diguanylate cyclase, GGDEF domain AS52_03873 PF01522 Polysaccharide deacetylase AS52_03875 PF00535 Glycosyl transferase family 2 AS52_03876 PF00210 Ferritin-like domain AS52_03879 PF13240 zinc-ribbon domain AS52_03881 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AS52_03882 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AS52_03883 PF01048 Phosphorylase superfamily AS52_03884 PF00248 Aldo/keto reductase family AS52_03889 PF00583 Acetyltransferase (GNAT) family AS52_03893 PF13411 MerR HTH family regulatory protein AS52_03894 PF00248 Aldo/keto reductase family AS52_03896 PF13411 MerR HTH family regulatory protein AS52_03899 PF08244 Glycosyl hydrolases family 32 C terminal AS52_03899 PF00251 Glycosyl hydrolases family 32 N-terminal domain AS52_03900 PF12732 YtxH-like protein AS52_03905 PF01734 Patatin-like phospholipase AS52_03906 PF02687 FtsX-like permease family AS52_03907 PF00005 ABC transporter AS52_03909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03910 PF00072 Response regulator receiver domain AS52_03910 PF00486 Transcriptional regulatory protein, C terminal AS52_03913 PF02583 Metal-sensitive transcriptional repressor AS52_03914 PF14040 Deoxyribonuclease NucA/NucB AS52_03915 PF11033 Competence protein J (ComJ) AS52_03917 PF13538 UvrD-like helicase C-terminal domain AS52_03919 PF00378 Enoyl-CoA hydratase/isomerase AS52_03920 PF01638 HxlR-like helix-turn-helix AS52_03921 PF00067 Cytochrome P450 AS52_03922 PF07681 DoxX AS52_03923 PF00535 Glycosyl transferase family 2 AS52_03924 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS52_03924 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS52_03924 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS52_03925 PF00535 Glycosyl transferase family 2 AS52_03928 PF00877 NlpC/P60 family AS52_03928 PF01476 LysM domain AS52_03929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AS52_03930 PF01047 MarR family AS52_03931 PF11738 Protein of unknown function (DUF3298) AS52_03931 PF13739 Deacetylase PdaC AS52_03932 PF04542 Sigma-70 region 2 AS52_03932 PF08281 Sigma-70, region 4 AS52_03933 PF11738 Protein of unknown function (DUF3298) AS52_03933 PF01522 Polysaccharide deacetylase AS52_03933 PF13739 Deacetylase PdaC AS52_03934 PF03845 Spore germination protein AS52_03935 PF05504 Spore germination B3/ GerAC like, C-terminal AS52_03936 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_03939 PF00324 Amino acid permease AS52_03940 PF00491 Arginase family AS52_03943 PF02386 Cation transport protein AS52_03944 PF02254 TrkA-N domain AS52_03944 PF02080 TrkA-C domain AS52_03946 PF01037 Lrp/AsnC ligand binding domain AS52_03948 PF13180 PDZ domain AS52_03949 PF00486 Transcriptional regulatory protein, C terminal AS52_03949 PF00072 Response regulator receiver domain AS52_03950 PF00512 His Kinase A (phospho-acceptor) domain AS52_03950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03950 PF00672 HAMP domain AS52_03951 PF00291 Pyridoxal-phosphate dependent enzyme AS52_03952 PF03061 Thioesterase superfamily AS52_03953 PF00392 Bacterial regulatory proteins, gntR family AS52_03953 PF07729 FCD domain AS52_03954 PF13536 Putative multidrug resistance efflux transporter AS52_03955 PF05076 Suppressor of fused protein (SUFU) AS52_03956 PF00557 Metallopeptidase family M24 AS52_03956 PF01321 Creatinase/Prolidase N-terminal domain AS52_03958 PF03816 Cell envelope-related transcriptional attenuator domain AS52_03960 PF02525 Flavodoxin-like fold AS52_03961 PF09529 Integral membrane protein (intg_mem_TP0381) AS52_03962 PF00528 Binding-protein-dependent transport system inner membrane component AS52_03963 PF00005 ABC transporter AS52_03963 PF00571 CBS domain AS52_03967 PF07690 Major Facilitator Superfamily AS52_03968 PF00440 Bacterial regulatory proteins, tetR family AS52_03969 PF00528 Binding-protein-dependent transport system inner membrane component AS52_03970 PF00528 Binding-protein-dependent transport system inner membrane component AS52_03971 PF01547 Bacterial extracellular solute-binding protein AS52_03973 PF00356 Bacterial regulatory proteins, lacI family AS52_03974 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_03974 PF00512 His Kinase A (phospho-acceptor) domain AS52_03975 PF01925 Sulfite exporter TauE/SafE AS52_03976 PF00375 Sodium:dicarboxylate symporter family AS52_03978 PF03060 Nitronate monooxygenase AS52_03983 PF03816 Cell envelope-related transcriptional attenuator domain AS52_03984 PF00884 Sulfatase AS52_03986 PF00892 EamA-like transporter family AS52_03987 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS52_03990 PF00324 Amino acid permease AS52_03991 PF05684 Protein of unknown function (DUF819) AS52_03992 PF00440 Bacterial regulatory proteins, tetR family AS52_03994 PF03466 LysR substrate binding domain AS52_03994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_03995 PF01925 Sulfite exporter TauE/SafE AS52_03996 PF00583 Acetyltransferase (GNAT) family AS52_03997 PF13460 NAD(P)H-binding AS52_03998 PF02308 MgtC family AS52_04000 PF05908 Poly-gamma-glutamate hydrolase AS52_04002 PF00392 Bacterial regulatory proteins, gntR family AS52_04002 PF00155 Aminotransferase class I and II AS52_04005 PF00324 Amino acid permease AS52_04011 PF00535 Glycosyl transferase family 2 AS52_04016 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_04020 PF01810 LysE type translocator AS52_04021 PF01235 Sodium:alanine symporter family AS52_04023 PF01758 Sodium Bile acid symporter family AS52_04024 PF00924 Mechanosensitive ion channel AS52_04025 PF00188 Cysteine-rich secretory protein family AS52_04026 PF01595 Cyclin M transmembrane N-terminal domain AS52_04026 PF03471 Transporter associated domain AS52_04026 PF00571 CBS domain AS52_04028 PF02146 Sir2 family AS52_04029 PF00582 Universal stress protein family AS52_04031 PF00365 Phosphofructokinase AS52_04032 PF01476 LysM domain AS52_04032 PF00877 NlpC/P60 family AS52_04036 PF01894 Uncharacterised protein family UPF0047 AS52_04037 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_04038 PF03845 Spore germination protein AS52_04039 PF05504 Spore germination B3/ GerAC like, C-terminal AS52_04043 PF00005 ABC transporter AS52_04046 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_04046 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AS52_04049 PF03009 Glycerophosphoryl diester phosphodiesterase family AS52_04051 PF08402 TOBE domain AS52_04051 PF00005 ABC transporter AS52_04056 PF00367 phosphotransferase system, EIIB AS52_04056 PF02378 Phosphotransferase system, EIIC AS52_04057 PF03123 CAT RNA binding domain AS52_04057 PF00874 PRD domain AS52_04058 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS52_04059 PF02525 Flavodoxin-like fold AS52_04062 PF01098 Cell cycle protein AS52_04063 PF01740 STAS domain AS52_04063 PF00916 Sulfate permease family AS52_04064 PF01048 Phosphorylase superfamily AS52_04066 PF14191 YodL-like AS52_04067 PF01569 PAP2 superfamily AS52_04069 PF07070 SpoOM protein AS52_04070 PF00069 Protein kinase domain AS52_04071 PF10720 Protein of unknown function (DUF2515) AS52_04072 PF14162 YozD-like protein AS52_04074 PF06855 YozE SAM-like fold AS52_04075 PF01757 Acyltransferase family AS52_04076 PF01063 Amino-transferase class IV AS52_04077 PF14122 YokU-like protein, putative antitoxin AS52_04078 PF12544 Lysine-2,3-aminomutase AS52_04079 PF00583 Acetyltransferase (GNAT) family AS52_04080 PF07687 Peptidase dimerisation domain AS52_04080 PF01546 Peptidase family M20/M25/M40 AS52_04081 PF01144 Coenzyme A transferase AS52_04082 PF01144 Coenzyme A transferase AS52_04083 PF00202 Aminotransferase class-III AS52_04084 PF00375 Sodium:dicarboxylate symporter family AS52_04086 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_04086 PF00512 His Kinase A (phospho-acceptor) domain AS52_04086 PF00989 PAS fold AS52_04086 PF08447 PAS fold AS52_04092 PF13472 GDSL-like Lipase/Acylhydrolase family AS52_04093 PF02630 SCO1/SenC AS52_04094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_04094 PF00512 His Kinase A (phospho-acceptor) domain AS52_04095 PF02645 Uncharacterised protein, DegV family COG1307 AS52_04096 PF10751 Protein of unknown function (DUF2535) AS52_04097 PF00585 C-terminal regulatory domain of Threonine dehydratase AS52_04097 PF00291 Pyridoxal-phosphate dependent enzyme AS52_04099 PF00186 Dihydrofolate reductase AS52_04100 PF00303 Thymidylate synthase AS52_04101 PF01842 ACT domain AS52_04101 PF00551 Formyl transferase AS52_04102 PF04183 IucA / IucC family AS52_04102 PF06276 Ferric iron reductase FhuF-like transporter AS52_04104 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AS52_04106 PF06276 Ferric iron reductase FhuF-like transporter AS52_04106 PF04183 IucA / IucC family AS52_04107 PF00282 Pyridoxal-dependent decarboxylase conserved domain AS52_04108 PF00202 Aminotransferase class-III AS52_04109 PF03932 CutC family AS52_04111 PF03441 FAD binding domain of DNA photolyase AS52_04111 PF00875 DNA photolyase AS52_04112 PF00512 His Kinase A (phospho-acceptor) domain AS52_04112 PF00989 PAS fold AS52_04112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_04116 PF00171 Aldehyde dehydrogenase family AS52_04117 PF00158 Sigma-54 interaction domain AS52_04118 PF00202 Aminotransferase class-III AS52_04119 PF11084 Protein of unknown function (DUF2621) AS52_04120 PF07301 Protein of unknown function (DUF1453) AS52_04121 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AS52_04122 PF02683 Cytochrome C biogenesis protein transmembrane region AS52_04123 PF09388 Spo0E like sporulation regulatory protein AS52_04124 PF00005 ABC transporter AS52_04124 PF00664 ABC transporter transmembrane region AS52_04125 PF00664 ABC transporter transmembrane region AS52_04125 PF00005 ABC transporter AS52_04126 PF03672 Uncharacterised protein family (UPF0154) AS52_04127 PF10747 Sporulation inhibitor of replication protein SirA AS52_04128 PF00456 Transketolase, thiamine diphosphate binding domain AS52_04128 PF02779 Transketolase, pyrimidine binding domain AS52_04128 PF02780 Transketolase, C-terminal domain AS52_04129 PF05979 Bacterial protein of unknown function (DUF896) AS52_04130 PF00239 Resolvase, N terminal domain AS52_04131 PF01476 LysM domain AS52_04132 PF01726 LexA DNA binding domain AS52_04132 PF00717 Peptidase S24-like AS52_04136 PF00535 Glycosyl transferase family 2 AS52_04137 PF16916 Dimerisation domain of Zinc Transporter AS52_04137 PF01545 Cation efflux family AS52_04138 PF13520 Amino acid permease AS52_04139 PF01520 N-acetylmuramoyl-L-alanine amidase AS52_04139 PF05036 Sporulation related domain AS52_04141 PF00120 Glutamine synthetase, catalytic domain AS52_04141 PF03951 Glutamine synthetase, beta-Grasp domain AS52_04142 PF13411 MerR HTH family regulatory protein AS52_04143 PF06838 Methionine gamma-lyase AS52_04144 PF01926 50S ribosome-binding GTPase AS52_04144 PF13167 GTP-binding GTPase N-terminal AS52_04144 PF16360 GTP-binding GTPase Middle Region AS52_04145 PF03458 UPF0126 domain AS52_04146 PF00004 ATPase family associated with various cellular activities (AAA) AS52_04146 PF17866 AAA lid domain AS52_04147 PF17209 Hfq protein AS52_04149 PF01119 DNA mismatch repair protein, C-terminal domain AS52_04149 PF08676 MutL C terminal dimerisation domain AS52_04150 PF01624 MutS domain I AS52_04150 PF05188 MutS domain II AS52_04150 PF05190 MutS family domain IV AS52_04150 PF00488 MutS domain V AS52_04150 PF05192 MutS domain III AS52_04151 PF13520 Amino acid permease AS52_04152 PF10628 Outer spore coat protein E (CotE) AS52_04153 PF06133 Control of competence regulator ComK, YlbF/YmcA AS52_04154 PF01938 TRAM domain AS52_04154 PF04055 Radical SAM superfamily AS52_04154 PF00919 Uncharacterized protein family UPF0004 AS52_04155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_04156 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AS52_04156 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AS52_04156 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AS52_04158 PF04232 Stage V sporulation protein S (SpoVS) AS52_04159 PF13277 YmdB-like protein AS52_04160 PF01966 HD domain AS52_04160 PF00013 KH domain AS52_04160 PF12072 Domain of unknown function (DUF3552) AS52_04161 PF00154 recA bacterial DNA recombination protein AS52_04162 PF02464 Competence-damaged protein AS52_04162 PF18146 Damage-inducible protein CinA KH domain AS52_04162 PF00994 Probable molybdopterin binding domain AS52_04163 PF01066 CDP-alcohol phosphatidyltransferase AS52_04164 PF13464 Domain of unknown function (DUF4115) AS52_04165 PF11868 Protein of unknown function (DUF3388) AS52_04166 PF11588 Protein of unknown function (DUF3243) AS52_04168 PF00675 Insulinase (Peptidase family M16) AS52_04168 PF05193 Peptidase M16 inactive domain AS52_04169 PF05193 Peptidase M16 inactive domain AS52_04174 PF07702 UTRA domain AS52_04174 PF00392 Bacterial regulatory proteins, gntR family AS52_04175 PF01580 FtsK/SpoIIIE family AS52_04175 PF09397 Ftsk gamma domain AS52_04175 PF17854 FtsK alpha domain AS52_04176 PF14035 YlzJ-like protein AS52_04177 PF00574 Clp protease AS52_04178 PF00753 Metallo-beta-lactamase superfamily AS52_04178 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AS52_04178 PF17770 Ribonuclease J C-terminal domain AS52_04179 PF00701 Dihydrodipicolinate synthetase family AS52_04180 PF00696 Amino acid kinase family AS52_04180 PF13840 ACT domain AS52_04181 PF02774 Semialdehyde dehydrogenase, dimerisation domain AS52_04181 PF01118 Semialdehyde dehydrogenase, NAD binding domain AS52_04182 PF02441 Flavoprotein AS52_04183 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS52_04183 PF16924 Dipicolinate synthase subunit A N-terminal domain AS52_04184 PF05239 PRC-barrel domain AS52_04185 PF05193 Peptidase M16 inactive domain AS52_04185 PF00675 Insulinase (Peptidase family M16) AS52_04186 PF01522 Polysaccharide deacetylase AS52_04187 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AS52_04187 PF01138 3' exoribonuclease family, domain 1 AS52_04187 PF00013 KH domain AS52_04187 PF00575 S1 RNA binding domain AS52_04187 PF03725 3' exoribonuclease family, domain 2 AS52_04188 PF00312 Ribosomal protein S15 AS52_04189 PF06574 FAD synthetase AS52_04189 PF01687 Riboflavin kinase AS52_04190 PF01509 TruB family pseudouridylate synthase (N terminal domain) AS52_04190 PF16198 tRNA pseudouridylate synthase B C-terminal domain AS52_04191 PF02033 Ribosome-binding factor A AS52_04192 PF04456 Protein of unknown function (DUF503) AS52_04193 PF04760 Translation initiation factor IF-2, N-terminal region AS52_04193 PF11987 Translation-initiation factor 2 AS52_04193 PF00009 Elongation factor Tu GTP binding domain AS52_04194 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AS52_04195 PF04296 Protein of unknown function (DUF448) AS52_04196 PF00575 S1 RNA binding domain AS52_04196 PF13184 NusA-like KH domain AS52_04196 PF08529 NusA N-terminal domain AS52_04197 PF02576 RimP N-terminal domain AS52_04197 PF17384 RimP C-terminal SH3 domain AS52_04198 PF11490 DNA polymerase III polC-type N-terminus II AS52_04198 PF14579 Helix-hairpin-helix motif AS52_04198 PF14480 DNA polymerase III polC-type N-terminus I AS52_04198 PF00929 Exonuclease AS52_04198 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS52_04198 PF02811 PHP domain AS52_04198 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS52_04199 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS52_04199 PF04073 Aminoacyl-tRNA editing domain AS52_04199 PF03129 Anticodon binding domain AS52_04200 PF13180 PDZ domain AS52_04200 PF02163 Peptidase family M50 AS52_04201 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AS52_04201 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AS52_04201 PF13288 DXP reductoisomerase C-terminal domain AS52_04203 PF01255 Putative undecaprenyl diphosphate synthase AS52_04204 PF01765 Ribosome recycling factor AS52_04205 PF00696 Amino acid kinase family AS52_04206 PF00889 Elongation factor TS AS52_04207 PF00318 Ribosomal protein S2 AS52_04209 PF04545 Sigma-70, region 4 AS52_04209 PF04539 Sigma-70 region 3 AS52_04209 PF04542 Sigma-70 region 2 AS52_04210 PF03975 CheD chemotactic sensory transduction AS52_04211 PF01584 CheW-like domain AS52_04212 PF01627 Hpt domain AS52_04212 PF02895 Signal transducing histidine kinase, homodimeric domain AS52_04212 PF07194 P2 response regulator binding domain AS52_04212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_04212 PF01584 CheW-like domain AS52_04213 PF01339 CheB methylesterase AS52_04213 PF00072 Response regulator receiver domain AS52_04214 PF10609 NUBPL iron-transfer P-loop NTPase AS52_04215 PF00448 SRP54-type protein, GTPase domain AS52_04216 PF00771 FHIPEP family AS52_04217 PF01312 FlhB HrpN YscU SpaS Family AS52_04218 PF01311 Bacterial export proteins, family 1 AS52_04219 PF01313 Bacterial export proteins, family 3 AS52_04220 PF00813 FliP family AS52_04221 PF04347 Flagellar biosynthesis protein, FliO AS52_04222 PF00072 Response regulator receiver domain AS52_04223 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS52_04223 PF04509 CheC-like family AS52_04224 PF02154 Flagellar motor switch protein FliM AS52_04224 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AS52_04226 PF06289 Flagellar and Swarming motility proteins AS52_04227 PF00460 Flagella basal body rod protein AS52_04227 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS52_04228 PF03963 Flagellar hook capping protein - N-terminal region AS52_04231 PF02050 Flagellar FliJ protein AS52_04232 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS52_04232 PF18269 T3SS EscN ATPase C-terminal domain AS52_04232 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS52_04233 PF02108 Flagellar assembly protein FliH AS52_04234 PF14842 FliG N-terminal domain AS52_04234 PF01706 FliG C-terminal domain AS52_04234 PF14841 FliG middle domain AS52_04235 PF08345 Flagellar M-ring protein C-terminal AS52_04235 PF01514 Secretory protein of YscJ/FliF family AS52_04236 PF02049 Flagellar hook-basal body complex protein FliE AS52_04237 PF00460 Flagella basal body rod protein AS52_04237 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS52_04238 PF00460 Flagella basal body rod protein AS52_04239 PF06018 CodY GAF-like domain AS52_04239 PF08222 CodY helix-turn-helix domain AS52_04240 PF07724 AAA domain (Cdc48 subfamily) AS52_04240 PF10431 C-terminal, D2-small domain, of ClpB protein AS52_04240 PF00004 ATPase family associated with various cellular activities (AAA) AS52_04241 PF00227 Proteasome subunit AS52_04242 PF00589 Phage integrase family AS52_04242 PF02899 Phage integrase, N-terminal SAM-like domain AS52_04243 PF01134 Glucose inhibited division protein A AS52_04244 PF01751 Toprim domain AS52_04244 PF01396 Topoisomerase DNA binding C4 zinc finger AS52_04244 PF01131 DNA topoisomerase AS52_04245 PF02481 DNA recombination-mediator protein A AS52_04246 PF00549 CoA-ligase AS52_04246 PF02629 CoA binding domain AS52_04247 PF08442 ATP-grasp domain AS52_04247 PF00549 CoA-ligase AS52_04248 PF01351 Ribonuclease HII AS52_04249 PF01926 50S ribosome-binding GTPase AS52_04250 PF10502 Signal peptidase, peptidase S26 AS52_04251 PF01245 Ribosomal protein L19 AS52_04252 PF01746 tRNA (Guanine-1)-methyltransferase AS52_04253 PF01782 RimM N-terminal domain AS52_04253 PF05239 PRC-barrel domain AS52_04256 PF00886 Ribosomal protein S16 AS52_04257 PF02978 Signal peptide binding domain AS52_04257 PF02881 SRP54-type protein, helical bundle domain AS52_04257 PF00448 SRP54-type protein, GTPase domain AS52_04258 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AS52_04259 PF02881 SRP54-type protein, helical bundle domain AS52_04259 PF00448 SRP54-type protein, GTPase domain AS52_04260 PF06470 SMC proteins Flexible Hinge Domain AS52_04260 PF02463 RecF/RecN/SMC N terminal domain AS52_04262 PF00550 Phosphopantetheine attachment site AS52_04264 PF00698 Acyl transferase domain AS52_04265 PF02504 Fatty acid synthesis protein AS52_04266 PF01575 MaoC like domain AS52_04266 PF08279 HTH domain AS52_04267 PF00271 Helicase conserved C-terminal domain AS52_04267 PF17191 RecG wedge domain AS52_04267 PF00270 DEAD/DEAH box helicase AS52_04268 PF03313 Serine dehydratase alpha chain AS52_04269 PF03315 Serine dehydratase beta chain AS52_04269 PF01842 ACT domain AS52_04271 PF02734 DAK2 domain AS52_04271 PF13684 Dihydroxyacetone kinase family AS52_04272 PF03780 Asp23 family, cell envelope-related function AS52_04273 PF00830 Ribosomal L28 family AS52_04274 PF04263 Thiamin pyrophosphokinase, catalytic domain AS52_04274 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AS52_04275 PF00834 Ribulose-phosphate 3 epimerase family AS52_04276 PF16745 RsgA N-terminal domain AS52_04276 PF03193 RsgA GTPase AS52_04277 PF03793 PASTA domain AS52_04277 PF00069 Protein kinase domain AS52_04279 PF04055 Radical SAM superfamily AS52_04280 PF01189 16S rRNA methyltransferase RsmB/F AS52_04280 PF01029 NusB family AS52_04281 PF00551 Formyl transferase AS52_04281 PF02911 Formyl transferase, C-terminal domain AS52_04282 PF01327 Polypeptide deformylase AS52_04283 PF04851 Type III restriction enzyme, res subunit AS52_04283 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AS52_04283 PF00271 Helicase conserved C-terminal domain AS52_04283 PF17764 3′ DNA-binding domain (3′BD) AS52_04283 PF18074 Primosomal protein N C-terminal domain AS52_04284 PF02441 Flavoprotein AS52_04284 PF04127 DNA / pantothenate metabolism flavoprotein AS52_04285 PF01192 RNA polymerase Rpb6 AS52_04286 PF00625 Guanylate kinase AS52_04287 PF04025 Domain of unknown function (DUF370) AS52_04288 PF08340 Domain of unknown function (DUF1732) AS52_04288 PF03755 YicC-like family, N-terminal region AS52_04289 PF00689 Cation transporting ATPase, C-terminus AS52_04289 PF00690 Cation transporter/ATPase, N-terminus AS52_04291 PF00156 Phosphoribosyl transferase domain AS52_04292 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AS52_04293 PF01180 Dihydroorotate dehydrogenase AS52_04294 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AS52_04294 PF00175 Oxidoreductase NAD-binding domain AS52_04295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS52_04295 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AS52_04295 PF02142 MGS-like domain AS52_04296 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AS52_04296 PF00117 Glutamine amidotransferase class-I AS52_04297 PF01979 Amidohydrolase family AS52_04299 PF00860 Permease family AS52_04300 PF00156 Phosphoribosyl transferase domain AS52_04301 PF01479 S4 domain AS52_04301 PF00849 RNA pseudouridylate synthase AS52_04302 PF01252 Signal peptidase (SPase) II AS52_04304 PF06827 Zinc finger found in FPG and IleRS AS52_04304 PF00133 tRNA synthetases class I (I, L, M and V) AS52_04304 PF08264 Anticodon-binding domain of tRNA AS52_04305 PF05103 DivIVA protein AS52_04306 PF01479 S4 domain AS52_04306 PF17774 Putative RNA-binding domain in YlmH AS52_04307 PF02325 YGGT family AS52_04308 PF04472 Cell division protein SepF AS52_04309 PF01168 Alanine racemase, N-terminal domain AS52_04311 PF05239 PRC-barrel domain AS52_04312 PF04542 Sigma-70 region 2 AS52_04312 PF04539 Sigma-70 region 3 AS52_04312 PF04545 Sigma-70, region 4 AS52_04313 PF04542 Sigma-70 region 2 AS52_04313 PF04545 Sigma-70, region 4 AS52_04314 PF03419 Sporulation factor SpoIIGA AS52_04315 PF00091 Tubulin/FtsZ family, GTPase domain AS52_04315 PF12327 FtsZ family, C-terminal domain AS52_04316 PF02491 SHS2 domain inserted in FTSA AS52_04317 PF08478 POTRA domain, FtsQ-type AS52_04318 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AS52_04318 PF01565 FAD binding domain AS52_04319 PF01098 Cell cycle protein AS52_04320 PF02875 Mur ligase family, glutamate ligase domain AS52_04320 PF08245 Mur ligase middle domain AS52_04321 PF00953 Glycosyl transferase family 4 AS52_04322 PF08245 Mur ligase middle domain AS52_04322 PF02875 Mur ligase family, glutamate ligase domain AS52_04322 PF01225 Mur ligase family, catalytic domain AS52_04323 PF00905 Penicillin binding protein transpeptidase domain AS52_04323 PF03717 Penicillin-binding Protein dimerisation domain AS52_04323 PF03793 PASTA domain AS52_04325 PF04977 Septum formation initiator AS52_04326 PF01795 MraW methylase family AS52_04327 PF10079 Bacillithiol biosynthesis BshC AS52_04329 PF08546 Ketopantoate reductase PanE/ApbA C terminal AS52_04329 PF02558 Ketopantoate reductase PanE/ApbA AS52_04330 PF01039 Carboxyl transferase domain AS52_04331 PF00364 Biotin-requiring enzyme AS52_04332 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS52_04332 PF00289 Biotin carboxylase, N-terminal domain AS52_04332 PF02785 Biotin carboxylase C-terminal domain AS52_04333 PF13508 Acetyltransferase (GNAT) domain AS52_04335 PF00378 Enoyl-CoA hydratase/isomerase AS52_04336 PF01783 Ribosomal L32p protein family AS52_04337 PF02620 Large ribosomal RNA subunit accumulation protein YceD AS52_04338 PF05636 HIGH Nucleotidyl Transferase AS52_04339 PF13180 PDZ domain AS52_04339 PF05362 Lon protease (S16) C-terminal proteolytic domain AS52_04340 PF01734 Patatin-like phospholipase AS52_04341 PF07670 Nucleoside recognition AS52_04342 PF01467 Cytidylyltransferase-like AS52_04345 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AS52_04347 PF06133 Control of competence regulator ComK, YlbF/YmcA AS52_04349 PF14003 YlbE-like protein AS52_04350 PF14071 Putative coat protein AS52_04351 PF07187 Protein of unknown function (DUF1405) AS52_04352 PF00032 Cytochrome b(C-terminal)/b6/petD AS52_04352 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS52_04353 PF00033 Cytochrome b/b6/petB AS52_04354 PF00355 Rieske [2Fe-2S] domain AS52_04355 PF10673 Protein of unknown function (DUF2487) AS52_04356 PF08858 IDEAL domain AS52_04356 PF08864 UPF0302 domain AS52_04358 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS52_04359 PF01842 ACT domain AS52_04359 PF02153 Prephenate dehydrogenase AS52_04360 PF00155 Aminotransferase class I and II AS52_04361 PF00290 Tryptophan synthase alpha chain AS52_04362 PF00291 Pyridoxal-phosphate dependent enzyme AS52_04363 PF00218 Indole-3-glycerol phosphate synthase AS52_04364 PF00591 Glycosyl transferase family, a/b domain AS52_04364 PF02885 Glycosyl transferase family, helical bundle domain AS52_04365 PF00425 chorismate binding enzyme AS52_04365 PF04715 Anthranilate synthase component I, N terminal region AS52_04366 PF01761 3-dehydroquinate synthase AS52_04367 PF01264 Chorismate synthase AS52_04368 PF03705 CheR methyltransferase, all-alpha domain AS52_04368 PF01739 CheR methyltransferase, SAM binding domain AS52_04369 PF00334 Nucleoside diphosphate kinase AS52_04370 PF00348 Polyprenyl synthetase AS52_04371 PF01209 ubiE/COQ5 methyltransferase family AS52_04372 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AS52_04373 PF02081 Tryptophan RNA-binding attenuator protein AS52_04374 PF01227 GTP cyclohydrolase I AS52_04375 PF00216 Bacterial DNA-binding protein AS52_04376 PF09547 Stage IV sporulation protein A (spore_IV_A) AS52_04378 PF10966 Protein of unknown function (DUF2768) AS52_04379 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AS52_04379 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AS52_04380 PF01926 50S ribosome-binding GTPase AS52_04380 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AS52_04382 PF14140 YpzI-like protein AS52_04383 PF07690 Major Facilitator Superfamily AS52_04384 PF01070 FMN-dependent dehydrogenase AS52_04385 PF00575 S1 RNA binding domain AS52_04386 PF01553 Acyltransferase AS52_04387 PF02224 Cytidylate kinase AS52_04390 PF14620 YpeB sporulation AS52_04390 PF03413 Peptidase propeptide and YPEB domain AS52_04391 PF01471 Putative peptidoglycan binding domain AS52_04391 PF07486 Cell Wall Hydrolase AS52_04392 PF13367 PrsW family intramembrane metalloprotease AS52_04393 PF00710 Asparaginase, N-terminal AS52_04393 PF17763 Glutaminase/Asparaginase C-terminal domain AS52_04395 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS52_04395 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AS52_04396 PF05389 Negative regulator of genetic competence (MecA) AS52_04397 PF13411 MerR HTH family regulatory protein AS52_04398 PF00149 Calcineurin-like phosphoesterase AS52_04401 PF02517 CPBP intramembrane metalloprotease AS52_04402 PF00270 DEAD/DEAH box helicase AS52_04402 PF00271 Helicase conserved C-terminal domain AS52_04405 PF12822 ECF transporter, substrate-specific component AS52_04406 PF01842 ACT domain AS52_04406 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS52_04406 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS52_04407 PF01551 Peptidase family M23 AS52_04408 PF00512 His Kinase A (phospho-acceptor) domain AS52_04408 PF00672 HAMP domain AS52_04408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_04408 PF18698 Histidine kinase sensor domain AS52_04408 PF00989 PAS fold AS52_04409 PF00072 Response regulator receiver domain AS52_04409 PF00486 Transcriptional regulatory protein, C terminal AS52_04410 PF01578 Cytochrome C assembly protein AS52_04411 PF05140 ResB-like family AS52_04412 PF00578 AhpC/TSA family AS52_04413 PF01479 S4 domain AS52_04413 PF00849 RNA pseudouridylate synthase AS52_04414 PF07670 Nucleoside recognition AS52_04415 PF07670 Nucleoside recognition AS52_04416 PF07943 Penicillin-binding protein 5, C-terminal domain AS52_04416 PF00768 D-alanyl-D-alanine carboxypeptidase AS52_04417 PF04079 Segregation and condensation complex subunit ScpB AS52_04418 PF02616 Segregation and condensation protein ScpA AS52_04419 PF03745 Domain of unknown function (DUF309) AS52_04420 PF00583 Acetyltransferase (GNAT) family AS52_04421 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AS52_04422 PF06207 Protein of unknown function (DUF1002) AS52_04423 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AS52_04423 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AS52_04424 PF03323 Bacillus/Clostridium GerA spore germination protein AS52_04425 PF14097 Stage V sporulation protein AE1 AS52_04426 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS52_04427 PF07451 Stage V sporulation protein AD (SpoVAD) AS52_04428 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AS52_04429 PF13782 Stage V sporulation protein AB AS52_04430 PF12164 Stage V sporulation protein AA AS52_04431 PF04539 Sigma-70 region 3 AS52_04431 PF04542 Sigma-70 region 2 AS52_04431 PF04545 Sigma-70, region 4 AS52_04432 PF13581 Histidine kinase-like ATPase domain AS52_04433 PF01740 STAS domain AS52_04434 PF00768 D-alanyl-D-alanine carboxypeptidase AS52_04434 PF07943 Penicillin-binding protein 5, C-terminal domain AS52_04435 PF01048 Phosphorylase superfamily AS52_04436 PF01676 Metalloenzyme superfamily AS52_04437 PF00589 Phage integrase family AS52_04437 PF02899 Phage integrase, N-terminal SAM-like domain AS52_04438 PF14004 Protein of unknown function (DUF4227) AS52_04439 PF01475 Ferric uptake regulator family AS52_04440 PF01944 Stage II sporulation protein M AS52_04441 PF00293 NUDIX domain AS52_04442 PF13072 Mother cell inhibitor of FtsZ AS52_04443 PF00248 Aldo/keto reductase family AS52_04445 PF01144 Coenzyme A transferase AS52_04446 PF01144 Coenzyme A transferase AS52_04447 PF00108 Thiolase, N-terminal domain AS52_04447 PF02803 Thiolase, C-terminal domain AS52_04448 PF00682 HMGL-like AS52_04449 PF12146 Serine aminopeptidase, S33 AS52_04452 PF00106 short chain dehydrogenase AS52_04453 PF00753 Metallo-beta-lactamase superfamily AS52_04454 PF03807 NADP oxidoreductase coenzyme F420-dependent AS52_04454 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS52_04455 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AS52_04456 PF00753 Metallo-beta-lactamase superfamily AS52_04456 PF12706 Beta-lactamase superfamily domain AS52_04457 PF00202 Aminotransferase class-III AS52_04458 PF00171 Aldehyde dehydrogenase family AS52_04459 PF13556 PucR C-terminal helix-turn-helix domain AS52_04459 PF07905 Purine catabolism regulatory protein-like family AS52_04459 PF17853 GGDEF-like domain AS52_04462 PF01979 Amidohydrolase family AS52_04463 PF01180 Dihydroorotate dehydrogenase AS52_04464 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_04464 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AS52_04465 PF07687 Peptidase dimerisation domain AS52_04465 PF01546 Peptidase family M20/M25/M40 AS52_04466 PF01039 Carboxyl transferase domain AS52_04469 PF03734 L,D-transpeptidase catalytic domain AS52_04470 PF06081 Aromatic acid exporter family member 1 AS52_04470 PF11728 Putative aromatic acid exporter C-terminal domain AS52_04471 PF00005 ABC transporter AS52_04472 PF00528 Binding-protein-dependent transport system inner membrane component AS52_04473 PF00497 Bacterial extracellular solute-binding proteins, family 3 AS52_04474 PF06491 Disulphide isomerase AS52_04476 PF01642 Methylmalonyl-CoA mutase AS52_04476 PF02310 B12 binding domain AS52_04478 PF00364 Biotin-requiring enzyme AS52_04478 PF02817 e3 binding domain AS52_04478 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AS52_04479 PF02779 Transketolase, pyrimidine binding domain AS52_04479 PF02780 Transketolase, C-terminal domain AS52_04480 PF00676 Dehydrogenase E1 component AS52_04481 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_04481 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AS52_04482 PF00871 Acetokinase family AS52_04483 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AS52_04483 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AS52_04484 PF01515 Phosphate acetyl/butaryl transferase AS52_04485 PF00158 Sigma-54 interaction domain AS52_04485 PF00989 PAS fold AS52_04485 PF02954 Bacterial regulatory protein, Fis family AS52_04486 PF11118 Protein of unknown function (DUF2627) AS52_04487 PF03009 Glycerophosphoryl diester phosphodiesterase family AS52_04488 PF14174 YycC-like protein AS52_04489 PF00854 POT family AS52_04490 PF08769 Sporulation initiation factor Spo0A C terminal AS52_04490 PF00072 Response regulator receiver domain AS52_04491 PF05580 SpoIVB peptidase S55 AS52_04491 PF17820 PDZ domain AS52_04492 PF13476 AAA domain AS52_04493 PF02863 Arginine repressor, C-terminal domain AS52_04493 PF01316 Arginine repressor, DNA binding domain AS52_04494 PF01479 S4 domain AS52_04494 PF01728 FtsJ-like methyltransferase AS52_04495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AS52_04495 PF02779 Transketolase, pyrimidine binding domain AS52_04495 PF02780 Transketolase, C-terminal domain AS52_04496 PF00348 Polyprenyl synthetase AS52_04497 PF02609 Exonuclease VII small subunit AS52_04498 PF13742 OB-fold nucleic acid binding domain AS52_04498 PF02601 Exonuclease VII, large subunit AS52_04499 PF01029 NusB family AS52_04500 PF03780 Asp23 family, cell envelope-related function AS52_04501 PF02785 Biotin carboxylase C-terminal domain AS52_04501 PF00289 Biotin carboxylase, N-terminal domain AS52_04501 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AS52_04502 PF00364 Biotin-requiring enzyme AS52_04503 PF12685 SpoIIIAH-like protein AS52_04505 PF09581 Stage III sporulation protein AF (Spore_III_AF) AS52_04506 PF09546 Stage III sporulation protein AE (spore_III_AE) AS52_04507 PF06686 Stage III sporulation protein AC/AD protein family AS52_04508 PF06686 Stage III sporulation protein AC/AD protein family AS52_04509 PF09548 Stage III sporulation protein AB (spore_III_AB) AS52_04511 PF10942 Protein of unknown function (DUF2619) AS52_04512 PF01132 Elongation factor P (EF-P) OB domain AS52_04512 PF08207 Elongation factor P (EF-P) KOW-like domain AS52_04512 PF09285 Elongation factor P, C-terminal AS52_04513 PF00557 Metallopeptidase family M24 AS52_04513 PF01321 Creatinase/Prolidase N-terminal domain AS52_04514 PF01220 Dehydroquinase class II AS52_04515 PF11085 Conserved membrane protein YqhR AS52_04516 PF07136 Protein of unknown function (DUF1385) AS52_04518 PF01734 Patatin-like phospholipase AS52_04519 PF01325 Iron dependent repressor, N-terminal DNA binding domain AS52_04519 PF02742 Iron dependent repressor, metal binding and dimerisation domain AS52_04520 PF02867 Ribonucleotide reductase, barrel domain AS52_04520 PF00317 Ribonucleotide reductase, all-alpha domain AS52_04520 PF03477 ATP cone domain AS52_04521 PF03099 Biotin/lipoate A/B protein ligase family AS52_04522 PF00581 Rhodanese-like domain AS52_04523 PF02347 Glycine cleavage system P-protein AS52_04524 PF02347 Glycine cleavage system P-protein AS52_04525 PF01571 Aminomethyltransferase folate-binding domain AS52_04525 PF08669 Glycine cleavage T-protein C-terminal barrel domain AS52_04526 PF00271 Helicase conserved C-terminal domain AS52_04526 PF00176 SNF2 family N-terminal domain AS52_04527 PF11079 Bacterial protein YqhG of unknown function AS52_04528 PF14038 YqzE-like protein AS52_04532 PF07963 Prokaryotic N-terminal methylation motif AS52_04533 PF07963 Prokaryotic N-terminal methylation motif AS52_04534 PF00482 Type II secretion system (T2SS), protein F AS52_04535 PF00437 Type II/IV secretion system protein AS52_04536 PF03960 ArsC family AS52_04537 PF11117 Protein of unknown function (DUF2626) AS52_04538 PF00753 Metallo-beta-lactamase superfamily AS52_04540 PF00246 Zinc carboxypeptidase AS52_04541 PF00480 ROK family AS52_04542 PF06014 Bacterial protein of unknown function (DUF910) AS52_04543 PF01694 Rhomboid family AS52_04546 PF01812 5-formyltetrahydrofolate cyclo-ligase family AS52_04547 PF00471 Ribosomal protein L33 AS52_04548 PF00483 Nucleotidyl transferase AS52_04549 PF00534 Glycosyl transferases group 1 AS52_04549 PF13439 Glycosyltransferase Family 4 AS52_04551 PF01895 PhoU domain AS52_04552 PF00005 ABC transporter AS52_04554 PF07690 Major Facilitator Superfamily AS52_04555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AS52_04555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AS52_04561 PF04306 Protein of unknown function (DUF456) AS52_04563 PF07690 Major Facilitator Superfamily AS52_04565 PF04551 GcpE protein AS52_04568 PF01475 Ferric uptake regulator family AS52_04569 PF00950 ABC 3 transport family AS52_04570 PF00005 ABC transporter AS52_04572 PF01261 Xylose isomerase-like TIM barrel AS52_04573 PF00270 DEAD/DEAH box helicase AS52_04573 PF00271 Helicase conserved C-terminal domain AS52_04575 PF02401 LytB protein AS52_04576 PF01784 NIF3 (NGG1p interacting factor 3) AS52_04577 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AS52_04578 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS52_04579 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS52_04579 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_04579 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_04580 PF04539 Sigma-70 region 3 AS52_04580 PF04542 Sigma-70 region 2 AS52_04580 PF00140 Sigma-70 factor, region 1.2 AS52_04580 PF03979 Sigma-70 factor, region 1.1 AS52_04580 PF04545 Sigma-70, region 4 AS52_04581 PF08275 DNA primase catalytic core, N-terminal domain AS52_04581 PF10410 DnaB-helicase binding domain of primase AS52_04581 PF01807 CHC2 zinc finger AS52_04582 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AS52_04583 PF03618 Kinase/pyrophosphorylase AS52_04584 PF08279 HTH domain AS52_04584 PF00571 CBS domain AS52_04585 PF02565 Recombination protein O C terminal AS52_04585 PF11967 Recombination protein O N terminal AS52_04586 PF14006 YqzL-like protein AS52_04587 PF07650 KH domain AS52_04587 PF01926 50S ribosome-binding GTPase AS52_04588 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS52_04589 PF01219 Prokaryotic diacylglycerol kinase AS52_04590 PF02130 Uncharacterized protein family UPF0054 AS52_04591 PF07698 7TM receptor with intracellular HD hydrolase AS52_04591 PF01966 HD domain AS52_04591 PF07697 7TM-HD extracellular AS52_04592 PF02562 PhoH-like protein AS52_04593 PF06898 Putative stage IV sporulation protein YqfD AS52_04594 PF07873 YabP family AS52_04596 PF12127 SigmaW regulon antibacterial AS52_04597 PF01957 NfeD-like C-terminal, partner-binding AS52_04597 PF01972 Serine dehydrogenase proteinase AS52_04598 PF09424 Yqey-like protein AS52_04599 PF01165 Ribosomal protein S21 AS52_04600 PF00919 Uncharacterized protein family UPF0004 AS52_04600 PF01938 TRAM domain AS52_04600 PF04055 Radical SAM superfamily AS52_04601 PF04452 RNA methyltransferase AS52_04603 PF00226 DnaJ domain AS52_04603 PF01556 DnaJ C terminal domain AS52_04603 PF00684 DnaJ central domain AS52_04604 PF00012 Hsp70 protein AS52_04605 PF01025 GrpE AS52_04606 PF01628 HrcA protein C terminal domain AS52_04607 PF06969 HemN C-terminal domain AS52_04607 PF04055 Radical SAM superfamily AS52_04608 PF06421 GTP-binding protein LepA C-terminus AS52_04608 PF00679 Elongation factor G C-terminus AS52_04608 PF03144 Elongation factor Tu domain 2 AS52_04608 PF00009 Elongation factor Tu GTP binding domain AS52_04610 PF03418 Germination protease AS52_04611 PF01649 Ribosomal protein S20 AS52_04612 PF06144 DNA polymerase III, delta subunit AS52_04613 PF14141 YqzM-like protein AS52_04614 PF00753 Metallo-beta-lactamase superfamily AS52_04614 PF13567 Domain of unknown function (DUF4131) AS52_04614 PF03772 Competence protein AS52_04615 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AS52_04616 PF10531 SLBB domain AS52_04617 PF03807 NADP oxidoreductase coenzyme F420-dependent AS52_04617 PF14748 Pyrroline-5-carboxylate reductase dimerisation AS52_04618 PF13649 Methyltransferase domain AS52_04620 PF01966 HD domain AS52_04621 PF01467 Cytidylyltransferase-like AS52_04622 PF01985 CRS1 / YhbY (CRM) domain AS52_04623 PF08501 Shikimate dehydrogenase substrate binding domain AS52_04623 PF01488 Shikimate / quinate 5-dehydrogenase AS52_04623 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AS52_04624 PF01926 50S ribosome-binding GTPase AS52_04626 PF08970 Sporulation inhibitor A AS52_04627 PF02666 Phosphatidylserine decarboxylase AS52_04628 PF01066 CDP-alcohol phosphatidyltransferase AS52_04630 PF04542 Sigma-70 region 2 AS52_04630 PF04545 Sigma-70, region 4 AS52_04631 PF09501 Probable sporulation protein (Bac_small_yrzI) AS52_04633 PF01053 Cys/Met metabolism PLP-dependent enzyme AS52_04634 PF00291 Pyridoxal-phosphate dependent enzyme AS52_04635 PF01048 Phosphorylase superfamily AS52_04636 PF13649 Methyltransferase domain AS52_04637 PF10750 Protein of unknown function (DUF2536) AS52_04639 PF00905 Penicillin binding protein transpeptidase domain AS52_04639 PF03717 Penicillin-binding Protein dimerisation domain AS52_04640 PF00857 Isochorismatase family AS52_04641 PF03449 Transcription elongation factor, N-terminal AS52_04641 PF01272 Transcription elongation factor, GreA/GreB, C-term AS52_04642 PF00485 Phosphoribulokinase / Uridine kinase family AS52_04646 PF02618 YceG-like family AS52_04647 PF06949 Protein of unknown function (DUF1292) AS52_04648 PF03652 Holliday junction resolvase AS52_04649 PF06135 IreB regulatory phosphoprotein AS52_04650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS52_04650 PF01411 tRNA synthetases class II (A) AS52_04650 PF02272 DHHA1 domain AS52_04651 PF01594 AI-2E family transporter AS52_04654 PF13538 UvrD-like helicase C-terminal domain AS52_04654 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AS52_04654 PF14490 Helix-hairpin-helix containing domain AS52_04657 PF00266 Aminotransferase class-V AS52_04658 PF02082 Transcriptional regulator AS52_04659 PF16193 AAA C-terminal domain AS52_04659 PF05496 Holliday junction DNA helicase RuvB P-loop domain AS52_04659 PF12002 MgsA AAA+ ATPase C terminal AS52_04660 PF00528 Binding-protein-dependent transport system inner membrane component AS52_04661 PF00528 Binding-protein-dependent transport system inner membrane component AS52_04662 PF12849 PBP superfamily domain AS52_04663 PF00899 ThiF family AS52_04665 PF02938 GAD domain AS52_04665 PF00152 tRNA synthetases class II (D, K and N) AS52_04665 PF01336 OB-fold nucleic acid binding domain AS52_04666 PF03129 Anticodon binding domain AS52_04666 PF13393 Histidyl-tRNA synthetase AS52_04668 PF08239 Bacterial SH3 domain AS52_04668 PF01520 N-acetylmuramoyl-L-alanine amidase AS52_04669 PF02580 D-Tyr-tRNA(Tyr) deacylase AS52_04670 PF02824 TGS domain AS52_04670 PF13291 ACT domain AS52_04670 PF04607 Region found in RelA / SpoT proteins AS52_04671 PF00156 Phosphoribosyl transferase domain AS52_04672 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AS52_04672 PF17768 RecJ OB domain AS52_04672 PF02272 DHHA1 domain AS52_04672 PF01368 DHH family AS52_04673 PF07549 SecD/SecF GG Motif AS52_04673 PF02355 Protein export membrane protein AS52_04674 PF13797 Post-transcriptional regulator AS52_04675 PF14667 Polysaccharide biosynthesis C-terminal domain AS52_04675 PF01943 Polysaccharide biosynthesis protein AS52_04676 PF04239 Protein of unknown function (DUF421) AS52_04677 PF12670 Protein of unknown function (DUF3792) AS52_04678 PF02699 Preprotein translocase subunit AS52_04680 PF02547 Queuosine biosynthesis protein AS52_04681 PF11146 Protein of unknown function (DUF2905) AS52_04682 PF17864 RuvB AAA lid domain AS52_04682 PF05491 RuvB C-terminal winged helix domain AS52_04682 PF05496 Holliday junction DNA helicase RuvB P-loop domain AS52_04684 PF08955 BofC C-terminal domain AS52_04684 PF08977 Bypass of Forespore C, N terminal AS52_04688 PF01476 LysM domain AS52_04689 PF02445 Quinolinate synthetase A protein AS52_04690 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AS52_04690 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AS52_04691 PF02910 Fumarate reductase flavoprotein C-term AS52_04691 PF00890 FAD binding domain AS52_04692 PF00266 Aminotransferase class-V AS52_04693 PF08279 HTH domain AS52_04693 PF02829 3H domain AS52_04694 PF01842 ACT domain AS52_04694 PF00800 Prephenate dehydratase AS52_04695 PF01842 ACT domain AS52_04696 PF01926 50S ribosome-binding GTPase AS52_04696 PF01018 GTP1/OBG AS52_04696 PF09269 Domain of unknown function (DUF1967) AS52_04697 PF14682 Sporulation initiation phospho-transferase B, C-terminal AS52_04697 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AS52_04698 PF01016 Ribosomal L27 protein AS52_04699 PF04327 Cysteine protease Prp AS52_04700 PF00829 Ribosomal prokaryotic L21 protein AS52_04701 PF10150 Ribonuclease E/G family AS52_04701 PF00575 S1 RNA binding domain AS52_04702 PF02163 Peptidase family M50 AS52_04703 PF01551 Peptidase family M23 AS52_04704 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AS52_04705 PF03775 Septum formation inhibitor MinC, C-terminal domain AS52_04706 PF04093 rod shape-determining protein MreD AS52_04707 PF04085 rod shape-determining protein MreC AS52_04709 PF04002 RadC-like JAB domain AS52_04710 PF02545 Maf-like protein AS52_04712 PF01478 Type IV leader peptidase family AS52_04712 PF06750 Bacterial Peptidase A24 N-terminal domain AS52_04714 PF04238 Protein of unknown function (DUF420) AS52_04715 PF02875 Mur ligase family, glutamate ligase domain AS52_04715 PF08245 Mur ligase middle domain AS52_04716 PF10458 Valyl tRNA synthetase tRNA binding arm AS52_04716 PF08264 Anticodon-binding domain of tRNA AS52_04716 PF00133 tRNA synthetases class I (I, L, M and V) AS52_04718 PF01476 LysM domain AS52_04719 PF00202 Aminotransferase class-III AS52_04720 PF00490 Delta-aminolevulinic acid dehydratase AS52_04721 PF02602 Uroporphyrinogen-III synthase HemD AS52_04722 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AS52_04722 PF03900 Porphobilinogen deaminase, C-terminal domain AS52_04723 PF01578 Cytochrome C assembly protein AS52_04724 PF01488 Shikimate / quinate 5-dehydrogenase AS52_04724 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AS52_04724 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AS52_04726 PF01926 50S ribosome-binding GTPase AS52_04727 PF00004 ATPase family associated with various cellular activities (AAA) AS52_04727 PF05362 Lon protease (S16) C-terminal proteolytic domain AS52_04727 PF02190 ATP-dependent protease La (LON) substrate-binding domain AS52_04728 PF05362 Lon protease (S16) C-terminal proteolytic domain AS52_04728 PF00004 ATPase family associated with various cellular activities (AAA) AS52_04729 PF06689 ClpX C4-type zinc finger AS52_04729 PF10431 C-terminal, D2-small domain, of ClpB protein AS52_04729 PF07724 AAA domain (Cdc48 subfamily) AS52_04730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AS52_04730 PF05697 Bacterial trigger factor protein (TF) AS52_04730 PF05698 Bacterial trigger factor protein (TF) C-terminus AS52_04732 PF00694 Aconitase C-terminal domain AS52_04733 PF00330 Aconitase family (aconitate hydratase) AS52_04734 PF00180 Isocitrate/isopropylmalate dehydrogenase AS52_04735 PF08502 LeuA allosteric (dimerisation) domain AS52_04735 PF00682 HMGL-like AS52_04736 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AS52_04736 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AS52_04737 PF01842 ACT domain AS52_04737 PF10369 Small subunit of acetolactate synthase AS52_04738 PF00205 Thiamine pyrophosphate enzyme, central domain AS52_04738 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS52_04738 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_04740 PF12850 Calcineurin-like phosphoesterase superfamily domain AS52_04741 PF01725 Ham1 family AS52_04742 PF01138 3' exoribonuclease family, domain 1 AS52_04742 PF03725 3' exoribonuclease family, domain 2 AS52_04743 PF10646 Sporulation and spore germination AS52_04744 PF01177 Asp/Glu/Hydantoin racemase AS52_04745 PF01047 MarR family AS52_04746 PF08000 Bacterial PH domain AS52_04746 PF11724 YvbH-like oligomerisation region AS52_04747 PF01384 Phosphate transporter family AS52_04748 PF01865 Protein of unknown function DUF47 AS52_04749 PF05223 NTF2-like N-terminal transpeptidase domain AS52_04749 PF03717 Penicillin-binding Protein dimerisation domain AS52_04749 PF00905 Penicillin binding protein transpeptidase domain AS52_04751 PF00296 Luciferase-like monooxygenase AS52_04752 PF03358 NADPH-dependent FMN reductase AS52_04753 PF00528 Binding-protein-dependent transport system inner membrane component AS52_04754 PF09084 NMT1/THI5 like AS52_04755 PF00005 ABC transporter AS52_04756 PF00999 Sodium/hydrogen exchanger family AS52_04757 PF02080 TrkA-C domain AS52_04759 PF00196 Bacterial regulatory proteins, luxR family AS52_04760 PF03061 Thioesterase superfamily AS52_04761 PF13085 2Fe-2S iron-sulfur cluster binding domain AS52_04761 PF13183 4Fe-4S dicluster domain AS52_04762 PF00890 FAD binding domain AS52_04762 PF02910 Fumarate reductase flavoprotein C-term AS52_04763 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AS52_04764 PF10702 Protein of unknown function (DUF2507) AS52_04765 PF00696 Amino acid kinase family AS52_04765 PF13840 ACT domain AS52_04765 PF01842 ACT domain AS52_04766 PF02151 UvrB/uvrC motif AS52_04766 PF08459 UvrC Helix-hairpin-helix N-terminal AS52_04766 PF01541 GIY-YIG catalytic domain AS52_04767 PF00085 Thioredoxin AS52_04768 PF01012 Electron transfer flavoprotein domain AS52_04768 PF00766 Electron transfer flavoprotein FAD-binding domain AS52_04769 PF01012 Electron transfer flavoprotein domain AS52_04770 PF00378 Enoyl-CoA hydratase/isomerase AS52_04771 PF00440 Bacterial regulatory proteins, tetR family AS52_04771 PF08359 YsiA-like protein, C-terminal region AS52_04772 PF13193 AMP-binding enzyme C-terminal domain AS52_04772 PF00501 AMP-binding enzyme AS52_04773 PF01717 Cobalamin-independent synthase, Catalytic domain AS52_04774 PF03994 Domain of Unknown Function (DUF350) AS52_04775 PF01713 Smr domain AS52_04775 PF00488 MutS domain V AS52_04776 PF02811 PHP domain AS52_04776 PF14716 Helix-hairpin-helix domain AS52_04776 PF14791 DNA polymerase beta thumb AS52_04777 PF02674 Colicin V production protein AS52_04778 PF05164 Cell division protein ZapA AS52_04780 PF03483 B3/4 domain AS52_04780 PF03484 tRNA synthetase B5 domain AS52_04780 PF03147 Ferredoxin-fold anticodon binding domain AS52_04780 PF01588 Putative tRNA binding domain AS52_04780 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AS52_04782 PF00588 SpoU rRNA Methylase family AS52_04782 PF08032 RNA 2'-O ribose methyltransferase substrate binding AS52_04783 PF14098 Small, acid-soluble spore protein I AS52_04784 PF05343 M42 glutamyl aminopeptidase AS52_04788 PF00453 Ribosomal protein L20 AS52_04789 PF01632 Ribosomal protein L35 AS52_04790 PF05198 Translation initiation factor IF-3, N-terminal domain AS52_04790 PF00707 Translation initiation factor IF-3, C-terminal domain AS52_04791 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AS52_04791 PF02824 TGS domain AS52_04791 PF03129 Anticodon binding domain AS52_04791 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS52_04792 PF08812 YtxC-like family AS52_04793 PF01695 IstB-like ATP binding protein AS52_04793 PF07319 Primosomal protein DnaI N-terminus AS52_04794 PF07261 Replication initiation and membrane attachment AS52_04795 PF03477 ATP cone domain AS52_04797 PF02675 S-adenosylmethionine decarboxylase AS52_04798 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS52_04798 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AS52_04799 PF01121 Dephospho-CoA kinase AS52_04801 PF06827 Zinc finger found in FPG and IleRS AS52_04801 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AS52_04801 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AS52_04802 PF01367 5'-3' exonuclease, C-terminal SAM fold AS52_04802 PF00476 DNA polymerase family A AS52_04802 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AS52_04803 PF16736 Single Cache-like AS52_04803 PF00989 PAS fold AS52_04803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_04803 PF00512 His Kinase A (phospho-acceptor) domain AS52_04804 PF00072 Response regulator receiver domain AS52_04804 PF00486 Transcriptional regulatory protein, C terminal AS52_04806 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AS52_04806 PF00056 lactate/malate dehydrogenase, NAD binding domain AS52_04807 PF00180 Isocitrate/isopropylmalate dehydrogenase AS52_04808 PF00285 Citrate synthase, C-terminal domain AS52_04809 PF04284 Protein of unknown function (DUF441) AS52_04810 PF01594 AI-2E family transporter AS52_04811 PF04186 FxsA cytoplasmic membrane protein AS52_04812 PF02887 Pyruvate kinase, alpha/beta domain AS52_04812 PF00391 PEP-utilising enzyme, mobile domain AS52_04812 PF00224 Pyruvate kinase, barrel domain AS52_04813 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AS52_04814 PF01039 Carboxyl transferase domain AS52_04814 PF17848 Acetyl-coA carboxylase zinc finger domain AS52_04815 PF07729 FCD domain AS52_04815 PF00392 Bacterial regulatory proteins, gntR family AS52_04816 PF03949 Malic enzyme, NAD binding domain AS52_04816 PF00390 Malic enzyme, N-terminal domain AS52_04817 PF07733 Bacterial DNA polymerase III alpha NTPase domain AS52_04817 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AS52_04817 PF14579 Helix-hairpin-helix motif AS52_04817 PF02811 PHP domain AS52_04817 PF01336 OB-fold nucleic acid binding domain AS52_04818 PF14034 Sporulation protein YtrH AS52_04820 PF02272 DHHA1 domain AS52_04820 PF01368 DHH family AS52_04821 PF14007 YtpI-like protein AS52_04822 PF00392 Bacterial regulatory proteins, gntR family AS52_04822 PF07085 DRTGG domain AS52_04822 PF00571 CBS domain AS52_04822 PF03061 Thioesterase superfamily AS52_04825 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AS52_04825 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS52_04827 PF14698 Argininosuccinate lyase C-terminal AS52_04827 PF00206 Lyase AS52_04828 PF00764 Arginosuccinate synthase AS52_04831 PF00871 Acetokinase family AS52_04832 PF02384 N-6 DNA Methylase AS52_04833 PF08534 Redoxin AS52_04834 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AS52_04835 PF11167 Protein of unknown function (DUF2953) AS52_04836 PF06271 RDD family AS52_04837 PF01343 Peptidase family S49 AS52_04838 PF01513 ATP-NAD kinase AS52_04839 PF07969 Amidohydrolase family AS52_04840 PF00269 Small, acid-soluble spore proteins, alpha/beta type AS52_04841 PF02926 THUMP domain AS52_04841 PF02568 Thiamine biosynthesis protein (ThiI) AS52_04842 PF00266 Aminotransferase class-V AS52_04843 PF05525 Branched-chain amino acid transport protein AS52_04844 PF06160 Septation ring formation regulator, EzrA AS52_04845 PF02811 PHP domain AS52_04846 PF00440 Bacterial regulatory proteins, tetR family AS52_04847 PF13185 GAF domain AS52_04848 PF00163 Ribosomal protein S4/S9 N-terminal domain AS52_04848 PF01479 S4 domain AS52_04849 PF01479 S4 domain AS52_04849 PF00579 tRNA synthetases class I (W and Y) AS52_04850 PF13193 AMP-binding enzyme C-terminal domain AS52_04850 PF00501 AMP-binding enzyme AS52_04851 PF00583 Acetyltransferase (GNAT) family AS52_04852 PF00571 CBS domain AS52_04853 PF00850 Histone deacetylase domain AS52_04854 PF00691 OmpA family AS52_04854 PF13677 Membrane MotB of proton-channel complex MotA/MotB AS52_04855 PF01618 MotA/TolQ/ExbB proton channel family AS52_04856 PF00356 Bacterial regulatory proteins, lacI family AS52_04857 PF01817 Chorismate mutase type II AS52_04857 PF00793 DAHP synthetase I family AS52_04858 PF11009 Protein of unknown function (DUF2847) AS52_04859 PF12732 YtxH-like protein AS52_04861 PF02073 Thermophilic metalloprotease (M29) AS52_04862 PF01225 Mur ligase family, catalytic domain AS52_04862 PF02875 Mur ligase family, glutamate ligase domain AS52_04862 PF08245 Mur ligase middle domain AS52_04864 PF09397 Ftsk gamma domain AS52_04864 PF01580 FtsK/SpoIIIE family AS52_04864 PF17854 FtsK alpha domain AS52_04865 PF14794 Domain of unknown function (DUF4479) AS52_04865 PF01588 Putative tRNA binding domain AS52_04866 PF07285 Protein of unknown function (DUF1444) AS52_04867 PF00085 Thioredoxin AS52_04868 PF01931 Protein of unknown function DUF84 AS52_04869 PF05343 M42 glutamyl aminopeptidase AS52_04870 PF03413 Peptidase propeptide and YPEB domain AS52_04871 PF00753 Metallo-beta-lactamase superfamily AS52_04872 PF02390 Putative methyltransferase AS52_04873 PF14165 YtzH-like protein AS52_04874 PF01636 Phosphotransferase enzyme family AS52_04875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS52_04875 PF00128 Alpha amylase, catalytic domain AS52_04875 PF17999 Pullulanase N1-terminal domain AS52_04878 PF00291 Pyridoxal-phosphate dependent enzyme AS52_04879 PF01546 Peptidase family M20/M25/M40 AS52_04880 PF08220 DeoR-like helix-turn-helix domain AS52_04881 PF01479 S4 domain AS52_04881 PF00849 RNA pseudouridylate synthase AS52_04882 PF14667 Polysaccharide biosynthesis C-terminal domain AS52_04882 PF01943 Polysaccharide biosynthesis protein AS52_04884 PF10957 Sporulation protein Cse60 AS52_04885 PF00581 Rhodanese-like domain AS52_04886 PF08264 Anticodon-binding domain of tRNA AS52_04886 PF00133 tRNA synthetases class I (I, L, M and V) AS52_04886 PF13603 Leucyl-tRNA synthetase, Domain 2 AS52_04886 PF09334 tRNA synthetases class I (M) AS52_04888 PF07690 Major Facilitator Superfamily AS52_04890 PF10732 Protein of unknown function (DUF2524) AS52_04891 PF16199 Radical_SAM C-terminal domain AS52_04891 PF04055 Radical SAM superfamily AS52_04892 PF06962 Putative rRNA methylase AS52_04893 PF10776 Protein of unknown function (DUF2600) AS52_04894 PF12146 Serine aminopeptidase, S33 AS52_04895 PF00132 Bacterial transferase hexapeptide (six repeats) AS52_04897 PF01569 PAP2 superfamily AS52_04898 PF13439 Glycosyltransferase Family 4 AS52_04898 PF00534 Glycosyl transferases group 1 AS52_04899 PF02773 S-adenosylmethionine synthetase, C-terminal domain AS52_04899 PF02772 S-adenosylmethionine synthetase, central domain AS52_04899 PF00438 S-adenosylmethionine synthetase, N-terminal domain AS52_04900 PF01293 Phosphoenolpyruvate carboxykinase AS52_04901 PF10763 Protein of unknown function (DUF2584) AS52_04902 PF00326 Prolyl oligopeptidase family AS52_04904 PF00005 ABC transporter AS52_04905 PF00528 Binding-protein-dependent transport system inner membrane component AS52_04906 PF00293 NUDIX domain AS52_04908 PF05105 Bacteriophage holin family AS52_04909 PF00210 Ferritin-like domain AS52_04910 PF02664 S-Ribosylhomocysteinase (LuxS) AS52_04911 PF00484 Carbonic anhydrase AS52_04912 PF02492 CobW/HypB/UreG, nucleotide-binding domain AS52_04912 PF07683 Cobalamin synthesis protein cobW C-terminal domain AS52_04913 PF01297 Zinc-uptake complex component A periplasmic AS52_04913 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AS52_04914 PF01197 Ribosomal protein L31 AS52_04915 PF01654 Cytochrome bd terminal oxidase subunit I AS52_04916 PF02322 Cytochrome bd terminal oxidase subunit II AS52_04917 PF00258 Flavodoxin AS52_04921 PF00268 Ribonucleotide reductase, small chain AS52_04922 PF00317 Ribonucleotide reductase, all-alpha domain AS52_04922 PF02867 Ribonucleotide reductase, barrel domain AS52_04922 PF03477 ATP cone domain AS52_04923 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AS52_04923 PF13378 Enolase C-terminal domain-like AS52_04924 PF13193 AMP-binding enzyme C-terminal domain AS52_04924 PF00501 AMP-binding enzyme AS52_04925 PF00378 Enoyl-CoA hydratase/isomerase AS52_04926 PF00561 alpha/beta hydrolase fold AS52_04927 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AS52_04927 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AS52_04927 PF16582 Middle domain of thiamine pyrophosphate AS52_04928 PF00425 chorismate binding enzyme AS52_04930 PF01258 Prokaryotic dksA/traR C4-type zinc finger AS52_04932 PF00343 Carbohydrate phosphorylase AS52_04933 PF00534 Glycosyl transferases group 1 AS52_04933 PF08323 Starch synthase catalytic domain AS52_04934 PF00483 Nucleotidyl transferase AS52_04936 PF00128 Alpha amylase, catalytic domain AS52_04936 PF02806 Alpha amylase, C-terminal all-beta domain AS52_04936 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AS52_04960 PF13193 AMP-binding enzyme C-terminal domain AS52_04960 PF00501 AMP-binding enzyme AS52_04961 PF02308 MgtC family AS52_04962 PF14824 Sirohaem biosynthesis protein central AS52_04963 PF01903 CbiX AS52_04964 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AS52_04966 PF14306 PUA-like domain AS52_04966 PF01747 ATP-sulfurylase AS52_04967 PF01384 Phosphate transporter family AS52_04968 PF01507 Phosphoadenosine phosphosulfate reductase family AS52_04969 PF10372 Bacterial membrane-spanning protein N-terminus AS52_04969 PF02457 DisA bacterial checkpoint controller nucleotide-binding AS52_04970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AS52_04971 PF02254 TrkA-N domain AS52_04971 PF07885 Ion channel AS52_04972 PF08868 YugN-like family AS52_04973 PF00342 Phosphoglucose isomerase AS52_04975 PF13244 Domain of unknown function (DUF4040) AS52_04975 PF00361 Proton-conducting membrane transporter AS52_04975 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AS52_04976 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AS52_04977 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AS52_04978 PF00361 Proton-conducting membrane transporter AS52_04979 PF01899 Na+/H+ ion antiporter subunit AS52_04980 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AS52_04981 PF03334 Na+/H+ antiporter subunit AS52_04982 PF00465 Iron-containing alcohol dehydrogenase AS52_04983 PF04070 Domain of unknown function (DUF378) AS52_04984 PF00575 S1 RNA binding domain AS52_04985 PF00155 Aminotransferase class I and II AS52_04986 PF01037 Lrp/AsnC ligand binding domain AS52_04987 PF00561 alpha/beta hydrolase fold AS52_04987 PF08386 TAP-like protein AS52_04988 PF00155 Aminotransferase class I and II AS52_04989 PF00080 Copper/zinc superoxide dismutase (SODC) AS52_04991 PF08810 Kinase associated protein B AS52_04992 PF00929 Exonuclease AS52_04993 PF03061 Thioesterase superfamily AS52_04995 PF01966 HD domain AS52_04997 PF03553 Na+/H+ antiporter family AS52_04997 PF13726 Na+-H+ antiporter family AS52_04998 PF02789 Cytosol aminopeptidase family, N-terminal domain AS52_04998 PF00883 Cytosol aminopeptidase family, catalytic domain AS52_04999 PF02681 Divergent PAP2 family AS52_05000 PF06725 3D domain AS52_05001 PF14068 Putative membrane protein AS52_05002 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_05003 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_05005 PF01521 Iron-sulphur cluster biosynthesis AS52_05006 PF01678 Diaminopimelate epimerase AS52_05007 PF07293 Protein of unknown function (DUF1450) AS52_05008 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_05009 PF07315 Protein of unknown function (DUF1462) AS52_05010 PF01106 NifU-like domain AS52_05011 PF00288 GHMP kinases N terminal domain AS52_05011 PF08544 GHMP kinases C terminal AS52_05012 PF00291 Pyridoxal-phosphate dependent enzyme AS52_05013 PF03447 Homoserine dehydrogenase, NAD binding domain AS52_05013 PF00742 Homoserine dehydrogenase AS52_05013 PF01842 ACT domain AS52_05014 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AS52_05014 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AS52_05016 PF04608 Phosphatidylglycerophosphatase A AS52_05017 PF13344 Haloacid dehalogenase-like hydrolase AS52_05018 PF01934 Protein of unknown function DUF86 AS52_05020 PF06265 Protein of unknown function (DUF1027) AS52_05021 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AS52_05022 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AS52_05022 PF04055 Radical SAM superfamily AS52_05023 PF01551 Peptidase family M23 AS52_05025 PF00209 Sodium:neurotransmitter symporter family AS52_05026 PF09560 Sporulation protein YunB (Spo_YunB) AS52_05027 PF08827 Domain of unknown function (DUF1805) AS52_05028 PF01904 Protein of unknown function DUF72 AS52_05029 PF01458 Uncharacterized protein family (UPF0051) AS52_05030 PF01592 NifU-like N terminal domain AS52_05031 PF00266 Aminotransferase class-V AS52_05032 PF01458 Uncharacterized protein family (UPF0051) AS52_05033 PF00005 ABC transporter AS52_05034 PF02627 Carboxymuconolactone decarboxylase family AS52_05035 PF03180 NLPA lipoprotein AS52_05036 PF00528 Binding-protein-dependent transport system inner membrane component AS52_05037 PF00005 ABC transporter AS52_05037 PF09383 NIL domain AS52_05038 PF00085 Thioredoxin AS52_05039 PF01751 Toprim domain AS52_05041 PF01597 Glycine cleavage H-protein AS52_05042 PF03960 ArsC family AS52_05043 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS52_05043 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_05043 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_05044 PF02803 Thiolase, C-terminal domain AS52_05044 PF00108 Thiolase, N-terminal domain AS52_05045 PF00378 Enoyl-CoA hydratase/isomerase AS52_05045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AS52_05045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AS52_05046 PF14115 YuzL-like protein AS52_05047 PF01619 Proline dehydrogenase AS52_05048 PF10835 Protein of unknown function (DUF2573) AS52_05050 PF00005 ABC transporter AS52_05051 PF01032 FecCD transport family AS52_05052 PF01032 FecCD transport family AS52_05053 PF01497 Periplasmic binding protein AS52_05054 PF13217 Protein of unknown function (DUF4025) AS52_05056 PF00873 AcrB/AcrD/AcrF family AS52_05057 PF00440 Bacterial regulatory proteins, tetR family AS52_05060 PF07690 Major Facilitator Superfamily AS52_05061 PF02627 Carboxymuconolactone decarboxylase family AS52_05062 PF03466 LysR substrate binding domain AS52_05062 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AS52_05063 PF02525 Flavodoxin-like fold AS52_05064 PF03239 Iron permease FTR1 family AS52_05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_05065 PF00512 His Kinase A (phospho-acceptor) domain AS52_05065 PF00672 HAMP domain AS52_05066 PF00486 Transcriptional regulatory protein, C terminal AS52_05066 PF00072 Response regulator receiver domain AS52_05067 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AS52_05068 PF01569 PAP2 superfamily AS52_05069 PF01047 MarR family AS52_05070 PF00881 Nitroreductase family AS52_05071 PF02597 ThiS family AS52_05072 PF02391 MoaE protein AS52_05073 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AS52_05074 PF03454 MoeA C-terminal region (domain IV) AS52_05074 PF03453 MoeA N-terminal region (domain I and II) AS52_05074 PF00994 Probable molybdopterin binding domain AS52_05075 PF00899 ThiF family AS52_05076 PF12804 MobA-like NTP transferase domain AS52_05077 PF04055 Radical SAM superfamily AS52_05077 PF06463 Molybdenum Cofactor Synthesis C AS52_05078 PF02634 FdhD/NarQ family AS52_05079 PF10057 Uncharacterized conserved protein (DUF2294) AS52_05080 PF00037 4Fe-4S binding domain AS52_05080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AS52_05080 PF00384 Molybdopterin oxidoreductase AS52_05080 PF01568 Molydopterin dinucleotide binding domain AS52_05080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AS52_05081 PF07849 Protein of unknown function (DUF1641) AS52_05083 PF00528 Binding-protein-dependent transport system inner membrane component AS52_05085 PF01668 SmpB protein AS52_05086 PF00773 RNB domain AS52_05086 PF08206 Ribonuclease B OB domain AS52_05086 PF00575 S1 RNA binding domain AS52_05086 PF17876 Cold shock domain AS52_05087 PF12146 Serine aminopeptidase, S33 AS52_05088 PF03840 Preprotein translocase SecG subunit AS52_05089 PF03952 Enolase, N-terminal domain AS52_05089 PF00113 Enolase, C-terminal TIM barrel domain AS52_05090 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AS52_05090 PF01676 Metalloenzyme superfamily AS52_05091 PF00121 Triosephosphate isomerase AS52_05092 PF00162 Phosphoglycerate kinase AS52_05093 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AS52_05093 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AS52_05094 PF04198 Putative sugar-binding domain AS52_05096 PF04552 Sigma-54, DNA binding domain AS52_05096 PF04963 Sigma-54 factor, core binding domain AS52_05096 PF00309 Sigma-54 factor, Activator interacting domain (AID) AS52_05099 PF00574 Clp protease AS52_05100 PF00381 PTS HPr component phosphorylation site AS52_05101 PF14527 WhiA LAGLIDADG-like domain AS52_05101 PF10298 WhiA N-terminal LAGLIDADG-like domain AS52_05101 PF02650 WhiA C-terminal HTH domain AS52_05102 PF01933 Uncharacterised protein family UPF0052 AS52_05103 PF03668 P-loop ATPase protein family AS52_05104 PF00293 NUDIX domain AS52_05105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AS52_05107 PF01502 Phosphoribosyl-AMP cyclohydrolase AS52_05107 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AS52_05108 PF00977 Histidine biosynthesis protein AS52_05109 PF00977 Histidine biosynthesis protein AS52_05110 PF00117 Glutamine amidotransferase class-I AS52_05111 PF00475 Imidazoleglycerol-phosphate dehydratase AS52_05112 PF00815 Histidinol dehydrogenase AS52_05113 PF01634 ATP phosphoribosyltransferase AS52_05114 PF13393 Histidyl-tRNA synthetase AS52_05115 PF14602 Hexapeptide repeat of succinyl-transferase AS52_05116 PF13419 Haloacid dehalogenase-like hydrolase AS52_05117 PF01790 Prolipoprotein diacylglyceryl transferase AS52_05118 PF02603 HPr Serine kinase N terminus AS52_05118 PF07475 HPr Serine kinase C-terminal domain AS52_05119 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AS52_05121 PF13349 Putative adhesin AS52_05123 PF17760 UvrA interaction domain AS52_05123 PF17755 UvrA DNA-binding domain AS52_05123 PF00005 ABC transporter AS52_05124 PF00271 Helicase conserved C-terminal domain AS52_05124 PF04851 Type III restriction enzyme, res subunit AS52_05124 PF02151 UvrB/uvrC motif AS52_05124 PF12344 Ultra-violet resistance protein B AS52_05124 PF17757 UvrB interaction domain AS52_05125 PF02954 Bacterial regulatory protein, Fis family AS52_05125 PF00072 Response regulator receiver domain AS52_05125 PF00158 Sigma-54 interaction domain AS52_05126 PF01619 Proline dehydrogenase AS52_05127 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) AS52_05128 PF17820 PDZ domain AS52_05129 PF03572 Peptidase family S41 AS52_05129 PF17820 PDZ domain AS52_05129 PF01471 Putative peptidoglycan binding domain AS52_05130 PF01551 Peptidase family M23 AS52_05130 PF08525 Opacity-associated protein A N-terminal motif AS52_05130 PF01476 LysM domain AS52_05131 PF02687 FtsX-like permease family AS52_05131 PF18075 FtsX extracellular domain AS52_05132 PF00005 ABC transporter AS52_05133 PF03358 NADPH-dependent FMN reductase AS52_05134 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AS52_05135 PF00902 Sec-independent protein translocase protein (TatC) AS52_05136 PF02416 mttA/Hcf106 family AS52_05137 PF09423 PhoD-like phosphatase AS52_05137 PF16655 PhoD-like phosphatase, N-terminal domain AS52_05138 PF00472 RF-1 domain AS52_05138 PF03462 PCRF domain AS52_05139 PF07517 SecA DEAD-like domain AS52_05139 PF02810 SEC-C motif AS52_05139 PF01043 SecA preprotein cross-linking domain AS52_05139 PF07516 SecA Wing and Scaffold domain AS52_05141 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AS52_05141 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AS52_05143 PF02561 Flagellar protein FliS AS52_05144 PF02465 Flagellar hook-associated protein 2 N-terminus AS52_05144 PF07195 Flagellar hook-associated protein 2 C-terminus AS52_05144 PF07196 Flagellin hook IN motif AS52_05146 PF00324 Amino acid permease AS52_05149 PF00465 Iron-containing alcohol dehydrogenase AS52_05151 PF02599 Global regulator protein family AS52_05152 PF02623 FliW protein AS52_05153 PF00700 Bacterial flagellin C-terminal helical region AS52_05153 PF00669 Bacterial flagellin N-terminal helical region AS52_05154 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS52_05154 PF00460 Flagella basal body rod protein AS52_05159 PF00271 Helicase conserved C-terminal domain AS52_05159 PF04851 Type III restriction enzyme, res subunit AS52_05160 PF02645 Uncharacterised protein, DegV family COG1307 AS52_05161 PF03885 Protein of unknown function (DUF327) AS52_05163 PF00196 Bacterial regulatory proteins, luxR family AS52_05163 PF00072 Response regulator receiver domain AS52_05164 PF05384 Sensor protein DegS AS52_05164 PF07730 Histidine kinase AS52_05164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_05165 PF01205 Uncharacterized protein family UPF0029 AS52_05165 PF09186 Domain of unknown function (DUF1949) AS52_05166 PF03816 Cell envelope-related transcriptional attenuator domain AS52_05167 PF00953 Glycosyl transferase family 4 AS52_05169 PF01145 SPFH domain / Band 7 family AS52_05169 PF15975 Flotillin AS52_05170 PF03808 Glycosyl transferase WecB/TagA/CpsF family AS52_05171 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AS52_05171 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AS52_05171 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AS52_05172 PF00483 Nucleotidyl transferase AS52_05174 PF00176 SNF2 family N-terminal domain AS52_05174 PF00271 Helicase conserved C-terminal domain AS52_05174 PF12419 SNF2 Helicase protein AS52_05175 PF00877 NlpC/P60 family AS52_05175 PF01476 LysM domain AS52_05176 PF00436 Single-strand binding protein family AS52_05177 PF14183 YwpF-like protein AS52_05179 PF01381 Helix-turn-helix AS52_05180 PF07977 FabA-like domain AS52_05181 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS52_05181 PF00460 Flagella basal body rod protein AS52_05182 PF00460 Flagella basal body rod protein AS52_05182 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AS52_05184 PF12116 Stage III sporulation protein D AS52_05185 PF01551 Peptidase family M23 AS52_05186 PF08486 Stage II sporulation protein AS52_05187 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS52_05189 PF06612 Protein of unknown function (DUF1146) AS52_05190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AS52_05190 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AS52_05191 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS52_05191 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS52_05192 PF00231 ATP synthase AS52_05193 PF02874 ATP synthase alpha/beta family, beta-barrel domain AS52_05193 PF00306 ATP synthase alpha/beta chain, C terminal domain AS52_05193 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS52_05194 PF00213 ATP synthase delta (OSCP) subunit AS52_05195 PF00430 ATP synthase B/B' CF(0) AS52_05196 PF00137 ATP synthase subunit C AS52_05197 PF00119 ATP synthase A chain AS52_05198 PF03899 ATP synthase I chain AS52_05200 PF00082 Subtilase family AS52_05200 PF02225 PA domain AS52_05200 PF05922 Peptidase inhibitor I9 AS52_05200 PF13860 FlgD Ig-like domain AS52_05201 PF02350 UDP-N-acetylglucosamine 2-epimerase AS52_05203 PF00464 Serine hydroxymethyltransferase AS52_05204 PF04260 Protein of unknown function (DUF436) AS52_05205 PF02502 Ribose/Galactose Isomerase AS52_05206 PF01451 Low molecular weight phosphotyrosine protein phosphatase AS52_05208 PF02659 Putative manganese efflux pump AS52_05209 PF03481 Putative GTP-binding controlling metal-binding AS52_05209 PF01300 Telomere recombination AS52_05211 PF09551 Stage II sporulation protein R (spore_II_R) AS52_05212 PF17827 PrmC N-terminal domain AS52_05212 PF13847 Methyltransferase domain AS52_05213 PF00472 RF-1 domain AS52_05213 PF03462 PCRF domain AS52_05214 PF00265 Thymidine kinase AS52_05215 PF01197 Ribosomal protein L31 AS52_05216 PF07498 Rho termination factor, N-terminal domain AS52_05216 PF07497 Rho termination factor, RNA-binding domain AS52_05216 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AS52_05217 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AS52_05218 PF00923 Transaldolase/Fructose-6-phosphate aldolase AS52_05219 PF01116 Fructose-bisphosphate aldolase class-II AS52_05220 PF00072 Response regulator receiver domain AS52_05221 PF10740 Domain of unknown function (DUF2529) AS52_05222 PF00117 Glutamine amidotransferase class-I AS52_05222 PF06418 CTP synthase N-terminus AS52_05223 PF05066 HB1, ASXL, restriction endonuclease HTH domain AS52_05224 PF02310 B12 binding domain AS52_05224 PF01642 Methylmalonyl-CoA mutase AS52_05226 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_05226 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS52_05226 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_05227 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AS52_05227 PF02770 Acyl-CoA dehydrogenase, middle domain AS52_05227 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AS52_05228 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AS52_05228 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AS52_05229 PF00108 Thiolase, N-terminal domain AS52_05229 PF02803 Thiolase, C-terminal domain AS52_05230 PF02754 Cysteine-rich domain AS52_05230 PF13183 4Fe-4S dicluster domain AS52_05231 PF13091 PLD-like domain AS52_05232 PF03851 UV-endonuclease UvdE AS52_05233 PF03485 Arginyl tRNA synthetase N terminal domain AS52_05233 PF05746 DALR anticodon binding domain AS52_05233 PF00750 tRNA synthetases class I (R) AS52_05235 PF00491 Arginase family AS52_05236 PF17284 Spermidine synthase tetramerisation domain AS52_05237 PF00912 Transglycosylase AS52_05237 PF00905 Penicillin binding protein transpeptidase domain AS52_05238 PF08741 YwhD family AS52_05239 PF02163 Peptidase family M50 AS52_05240 PF01361 Tautomerase enzyme AS52_05242 PF01966 HD domain AS52_05243 PF07293 Protein of unknown function (DUF1450) AS52_05245 PF03099 Biotin/lipoate A/B protein ligase family AS52_05246 PF01515 Phosphate acetyl/butaryl transferase AS52_05248 PF07486 Cell Wall Hydrolase AS52_05249 PF09671 Spore coat protein (Spore_GerQ) AS52_05250 PF04241 Protein of unknown function (DUF423) AS52_05252 PF03167 Uracil DNA glycosylase superfamily AS52_05254 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AS52_05254 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AS52_05255 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AS52_05255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AS52_05256 PF06018 CodY GAF-like domain AS52_05256 PF17853 GGDEF-like domain AS52_05256 PF13556 PucR C-terminal helix-turn-helix domain AS52_05257 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AS52_05257 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AS52_05259 PF08543 Phosphomethylpyrimidine kinase AS52_05261 PF13419 Haloacid dehalogenase-like hydrolase AS52_05262 PF00367 phosphotransferase system, EIIB AS52_05262 PF02378 Phosphotransferase system, EIIC AS52_05262 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AS52_05263 PF03372 Endonuclease/Exonuclease/phosphatase family AS52_05264 PF13439 Glycosyltransferase Family 4 AS52_05264 PF00534 Glycosyl transferases group 1 AS52_05267 PF00892 EamA-like transporter family AS52_05269 PF03023 Lipid II flippase MurJ AS52_05272 PF00664 ABC transporter transmembrane region AS52_05272 PF00005 ABC transporter AS52_05273 PF00664 ABC transporter transmembrane region AS52_05273 PF00005 ABC transporter AS52_05274 PF02322 Cytochrome bd terminal oxidase subunit II AS52_05275 PF01654 Cytochrome bd terminal oxidase subunit I AS52_05276 PF12821 Threonine/Serine exporter, ThrE AS52_05277 PF06738 Putative threonine/serine exporter AS52_05278 PF00356 Bacterial regulatory proteins, lacI family AS52_05280 PF00083 Sugar (and other) transporter AS52_05281 PF00171 Aldehyde dehydrogenase family AS52_05282 PF00696 Amino acid kinase family AS52_05283 PF13722 5TM C-terminal transporter carbon starvation CstA AS52_05283 PF02554 Carbon starvation protein CstA AS52_05284 PF00199 Catalase AS52_05284 PF06628 Catalase-related immune-responsive AS52_05285 PF00672 HAMP domain AS52_05285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_05285 PF00512 His Kinase A (phospho-acceptor) domain AS52_05286 PF09154 Domain of unknown function (DUF1939) AS52_05286 PF00128 Alpha amylase, catalytic domain AS52_05287 PF00939 Sodium:sulfate symporter transmembrane region AS52_05288 PF10672 S-adenosylmethionine-dependent methyltransferase AS52_05288 PF17785 PUA-like domain AS52_05290 PF00486 Transcriptional regulatory protein, C terminal AS52_05290 PF00072 Response regulator receiver domain AS52_05291 PF00512 His Kinase A (phospho-acceptor) domain AS52_05291 PF00672 HAMP domain AS52_05291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_05294 PF01207 Dihydrouridine synthase (Dus) AS52_05295 PF02590 Predicted SPOUT methyltransferase AS52_05297 PF13180 PDZ domain AS52_05298 PF00753 Metallo-beta-lactamase superfamily AS52_05299 PF09648 YycH protein AS52_05301 PF00672 HAMP domain AS52_05301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_05301 PF00512 His Kinase A (phospho-acceptor) domain AS52_05301 PF13426 PAS domain AS52_05302 PF00072 Response regulator receiver domain AS52_05302 PF00486 Transcriptional regulatory protein, C terminal AS52_05307 PF00709 Adenylosuccinate synthetase AS52_05308 PF03796 DnaB-like helicase C terminal domain AS52_05308 PF00772 DnaB-like helicase N terminal domain AS52_05309 PF03948 Ribosomal protein L9, C-terminal domain AS52_05309 PF01281 Ribosomal protein L9, N-terminal domain AS52_05310 PF02272 DHHA1 domain AS52_05310 PF01368 DHH family AS52_05312 PF01084 Ribosomal protein S18 AS52_05313 PF00436 Single-strand binding protein family AS52_05314 PF01250 Ribosomal protein S6 AS52_05315 PF01926 50S ribosome-binding GTPase AS52_05315 PF06071 Protein of unknown function (DUF933) AS52_05316 PF06107 Bacterial protein of unknown function (DUF951) AS52_05317 PF00924 Mechanosensitive ion channel AS52_05319 PF06866 Protein of unknown function (DUF1256) AS52_05320 PF17762 HTH domain found in ParB protein AS52_05320 PF02195 ParB-like nuclease domain AS52_05321 PF13614 AAA domain AS52_05322 PF17762 HTH domain found in ParB protein AS52_05322 PF02195 ParB-like nuclease domain AS52_05323 PF02527 rRNA small subunit methyltransferase G AS52_05324 PF01134 Glucose inhibited division protein A AS52_05324 PF13932 GidA associated domain AS52_05325 PF10396 GTP-binding protein TrmE N-terminus AS52_05325 PF01926 50S ribosome-binding GTPase AS52_05325 PF12631 MnmE helical domain AS52_05326 PF14804 Jag N-terminus AS52_05326 PF01424 R3H domain AS52_05327 PF02096 60Kd inner membrane protein AS52_05328 PF00825 Ribonuclease P AS52_05329 PF00468 Ribosomal protein L34 AS52_05330 PF00308 Bacterial dnaA protein AS52_05330 PF08299 Bacterial dnaA protein helix-turn-helix AS52_05330 PF11638 DnaA N-terminal domain AS52_05331 PF02767 DNA polymerase III beta subunit, central domain AS52_05331 PF02768 DNA polymerase III beta subunit, C-terminal domain AS52_05331 PF00712 DNA polymerase III beta subunit, N-terminal domain AS52_05333 PF02463 RecF/RecN/SMC N terminal domain AS52_05334 PF01751 Toprim domain AS52_05334 PF00204 DNA gyrase B AS52_05334 PF00986 DNA gyrase B subunit, carboxyl terminus AS52_05334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AS52_05335 PF03989 DNA gyrase C-terminal domain, beta-propeller AS52_05335 PF00521 DNA gyrase/topoisomerase IV, subunit A AS52_05341 PF14175 YaaC-like Protein AS52_05342 PF00571 CBS domain AS52_05342 PF00478 IMP dehydrogenase / GMP reductase domain AS52_05343 PF07943 Penicillin-binding protein 5, C-terminal domain AS52_05343 PF00768 D-alanyl-D-alanine carboxypeptidase AS52_05344 PF01680 SOR/SNZ family AS52_05345 PF01174 SNO glutamine amidotransferase family AS52_05346 PF02403 Seryl-tRNA synthetase N-terminal domain AS52_05346 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AS52_05348 PF01712 Deoxynucleoside kinase AS52_05349 PF01712 Deoxynucleoside kinase AS52_05350 PF01476 LysM domain AS52_05350 PF00704 Glycosyl hydrolases family 18 AS52_05351 PF00857 Isochorismatase family AS52_05352 PF14437 MafB19-like deaminase AS52_05353 PF12169 DNA polymerase III subunits gamma and tau domain III AS52_05354 PF02575 YbaB/EbfC DNA-binding family AS52_05355 PF13662 Toprim domain AS52_05355 PF02132 RecR protein AS52_05356 PF10704 Protein of unknown function (DUF2508) AS52_05357 PF07441 SigmaK-factor processing regulatory protein BofA AS52_05378 PF01565 FAD binding domain AS52_05378 PF08031 Berberine and berberine like AS52_05381 PF00082 Subtilase family AS52_05384 PF02350 UDP-N-acetylglucosamine 2-epimerase AS52_05385 PF02719 Polysaccharide biosynthesis protein AS52_05389 PF16363 GDP-mannose 4,6 dehydratase AS52_05392 PF00535 Glycosyl transferase family 2 AS52_05394 PF13439 Glycosyltransferase Family 4 AS52_05394 PF00534 Glycosyl transferases group 1 AS52_05396 PF00535 Glycosyl transferase family 2 AS52_05399 PF00535 Glycosyl transferase family 2 AS52_05402 PF07552 Spore Coat Protein X and V domain AS52_05407 PF13439 Glycosyltransferase Family 4 AS52_05407 PF00534 Glycosyl transferases group 1 AS52_05417 PF07552 Spore Coat Protein X and V domain AS52_05419 PF03372 Endonuclease/Exonuclease/phosphatase family AS52_05423 PF01051 Initiator Replication protein AS52_05424 PF02899 Phage integrase, N-terminal SAM-like domain AS52_05424 PF00589 Phage integrase family AS52_05436 PF08864 UPF0302 domain AS52_05436 PF08858 IDEAL domain AS52_05437 PF00239 Resolvase, N terminal domain AS52_05437 PF02796 Helix-turn-helix domain of resolvase