BMQ_0001 SM00382 ATPases associated with a variety of cellular activities BMQ_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BMQ_0002 SM00480 DNA polymerase III beta subunit BMQ_0005 SM00387 Histidine kinase-like ATPases BMQ_0005 SM00433 TopoisomeraseII BMQ_0006 SM00434 DNA Topoisomerase IV BMQ_0013 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_0013 SM01240 BMQ_0013 BMQ_0014 SM00936 Penicillin-binding protein 5, C-terminal domain BMQ_0021 SM00257 Lysin motif BMQ_0021 SM00636 BMQ_0021 BMQ_0024 SM00382 ATPases associated with a variety of cellular activities BMQ_0026 SM00493 BMQ_0026 BMQ_0056 SM00966 SpoVT / AbrB like domain BMQ_0059 SM00493 BMQ_0059 BMQ_0060 SM00650 Ribosomal RNA adenine dimethylases BMQ_0070 SM01400 BMQ_0070 BMQ_0074 SM00487 DEAD-like helicases superfamily BMQ_0074 SM00490 helicase superfamily c-terminal domain BMQ_0074 SM00982 BMQ_0074 BMQ_0074 SM01058 CarD-like/TRCF domain BMQ_0076 SM00966 SpoVT / AbrB like domain BMQ_0079 SM00363 S4 RNA-binding domain BMQ_0083 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_0086 SM00331 Sigma factor PP2C-like phosphatases BMQ_0086 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BMQ_0088 SM00220 Serine/Threonine protein kinases, catalytic domain BMQ_0089 SM00977 TilS substrate C-terminal domain BMQ_0091 SM00382 ATPases associated with a variety of cellular activities BMQ_0098 SM00905 Dihydroneopterin aldolase BMQ_0107 SM00382 ATPases associated with a variety of cellular activities BMQ_0107 SM01086 C-terminal, D2-small domain, of ClpB protein BMQ_0108 SM00382 ATPases associated with a variety of cellular activities BMQ_0110 SM00670 Large family of predicted nucleotide-binding domains BMQ_0115 SM00840 BMQ_0115 BMQ_0116 SM00535 Ribonuclease III family BMQ_0117 SM00967 RNA 2'-O ribose methyltransferase substrate binding BMQ_0119 SM00421 helix_turn_helix, Lux Regulon BMQ_0122 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BMQ_0122 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BMQ_0123 SM00649 Ribosomal protein L11/L12 BMQ_0129 SM00663 RNA polymerase I subunit A N-terminus BMQ_0133 SM00838 Elongation factor G C-terminus BMQ_0133 SM00889 Elongation factor G, domain IV BMQ_0135 SM01403 BMQ_0135 BMQ_0137 SM01403 BMQ_0137 BMQ_0141 SM01382 BMQ_0141 BMQ_0141 SM01383 BMQ_0141 BMQ_0144 SM00322 K homology RNA-binding domain BMQ_0148 SM01374 BMQ_0148 BMQ_0149 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BMQ_0161 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_0164 SM00662 RNA polymerases D BMQ_0166 SM00382 ATPases associated with a variety of cellular activities BMQ_0167 SM00382 ATPases associated with a variety of cellular activities BMQ_0173 SM00646 BMQ_0173 BMQ_0177 SM01251 BMQ_0177 BMQ_0201 SM00287 Bacterial SH3 domain homologues BMQ_0209 SM00530 Helix-turn-helix XRE-family like proteins BMQ_0210 SM00382 ATPases associated with a variety of cellular activities BMQ_0215 SM00448 cheY-homologous receiver domain BMQ_0215 SM00862 Transcriptional regulatory protein, C terminal BMQ_0216 SM00387 Histidine kinase-like ATPases BMQ_0216 SM00388 His Kinase A (phosphoacceptor) domain BMQ_0221 SM00487 DEAD-like helicases superfamily BMQ_0221 SM00490 helicase superfamily c-terminal domain BMQ_0226 SM01005 Alanine racemase, C-terminal domain BMQ_0231 SM00387 Histidine kinase-like ATPases BMQ_0232 SM00331 Sigma factor PP2C-like phosphatases BMQ_0236 SM00331 Sigma factor PP2C-like phosphatases BMQ_0237 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_0237 SM00732 Likely ribonuclease with RNase H fold. BMQ_0239 SM00731 SprT homologues. BMQ_0260 SM00382 ATPases associated with a variety of cellular activities BMQ_0261 SM00881 CoA binding domain BMQ_0266 SM00883 Chaperonin 10 Kd subunit BMQ_0270 SM00460 Transglutaminase/protease-like homologues BMQ_0277 SM01001 AIR carboxylase BMQ_0279 SM00998 Adenylosuccinate lyase C-terminus BMQ_0282 SM01211 BMQ_0282 BMQ_0287 SM00798 AICARFT/IMPCHase bienzyme BMQ_0287 SM00851 MGS-like domain BMQ_0288 SM01209 BMQ_0288 BMQ_0288 SM01210 BMQ_0288 BMQ_0295 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMQ_0295 SM00292 breast cancer carboxy-terminal domain BMQ_0295 SM00532 Ligase N family BMQ_0300 SM00845 GatB domain BMQ_0301 SM00046 Diacylglycerol kinase catalytic domain (presumed) BMQ_0307 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_0307 SM00387 Histidine kinase-like ATPases BMQ_0307 SM00388 His Kinase A (phosphoacceptor) domain BMQ_0311 SM00422 helix_turn_helix, mercury resistance BMQ_0315 SM00382 ATPases associated with a variety of cellular activities BMQ_0316 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_0316 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BMQ_0323 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_0323 SM00387 Histidine kinase-like ATPases BMQ_0323 SM00388 His Kinase A (phosphoacceptor) domain BMQ_0324 SM00448 cheY-homologous receiver domain BMQ_0324 SM00862 Transcriptional regulatory protein, C terminal BMQ_0325 SM00014 Acid phosphatase homologues BMQ_0339 SM00091 PAS domain BMQ_0339 SM00387 Histidine kinase-like ATPases BMQ_0340 SM00448 cheY-homologous receiver domain BMQ_0343 SM00091 PAS domain BMQ_0343 SM00387 Histidine kinase-like ATPases BMQ_0343 SM00388 His Kinase A (phosphoacceptor) domain BMQ_0344 SM00487 DEAD-like helicases superfamily BMQ_0344 SM00490 helicase superfamily c-terminal domain BMQ_0356 SM01065 Starch binding domain BMQ_0360 SM00382 ATPases associated with a variety of cellular activities BMQ_0371 SM00226 Low molecular weight phosphatase family BMQ_0376 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_0391 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_0391 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_0391 SM00387 Histidine kinase-like ATPases BMQ_0391 SM00388 His Kinase A (phosphoacceptor) domain BMQ_0402 SM00478 endonuclease III BMQ_0402 SM00525 BMQ_0402 BMQ_0408 SM00382 ATPases associated with a variety of cellular activities BMQ_0411 SM00382 ATPases associated with a variety of cellular activities BMQ_0439 SM00873 B3/4 domain BMQ_0440 SM00567 E-Z type HEAT repeats BMQ_0443 SM00763 PrkA AAA domain BMQ_0458 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_0458 SM00876 Biotin and Thiamin Synthesis associated domain BMQ_0460 SM00382 ATPases associated with a variety of cellular activities BMQ_0467 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMQ_0476 SM00257 Lysin motif BMQ_0479 SM00287 Bacterial SH3 domain homologues BMQ_0482 SM00155 Phospholipase D. Active site motifs. BMQ_0486 SM00354 helix_turn _helix lactose operon repressor BMQ_0493 SM00354 helix_turn _helix lactose operon repressor BMQ_0498 SM00344 helix_turn_helix ASNC type BMQ_0504 SM00363 S4 RNA-binding domain BMQ_0508 SM00864 Tubulin/FtsZ family, GTPase domain BMQ_0508 SM00865 Tubulin/FtsZ family, C-terminal domain BMQ_0515 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BMQ_0519 SM00829 Enoylreductase BMQ_0523 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BMQ_0523 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_0540 SM00829 Enoylreductase BMQ_0542 SM00382 ATPases associated with a variety of cellular activities BMQ_0544 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_0544 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BMQ_0554 SM00855 Phosphoglycerate mutase family BMQ_0557 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_0557 SM01091 Transporter associated domain BMQ_0560 SM00382 ATPases associated with a variety of cellular activities BMQ_0570 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_0573 SM00411 bacterial (prokaryotic) histone like domain BMQ_0575 SM00382 ATPases associated with a variety of cellular activities BMQ_0577 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_0590 SM00382 ATPases associated with a variety of cellular activities BMQ_0594 SM00014 Acid phosphatase homologues BMQ_0604 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_0605 SM00342 helix_turn_helix, arabinose operon control protein BMQ_0605 SM00448 cheY-homologous receiver domain BMQ_0607 SM00849 Metallo-beta-lactamase superfamily BMQ_0635 SM00914 BMQ_0635 BMQ_0638 SM00822 BMQ_0638 BMQ_0657 SM00938 Nitrogen regulatory protein P-II BMQ_0659 SM00642 Alpha-amylase domain BMQ_0660 SM00354 helix_turn _helix lactose operon repressor BMQ_0665 SM00382 ATPases associated with a variety of cellular activities BMQ_0676 SM00100 Cyclic nucleotide-monophosphate binding domain BMQ_0676 SM00419 helix_turn_helix, cAMP Regulatory protein BMQ_0677 SM00859 Semialdehyde dehydrogenase, NAD binding domain BMQ_0681 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BMQ_0682 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BMQ_0686 SM00382 ATPases associated with a variety of cellular activities BMQ_0686 SM01086 C-terminal, D2-small domain, of ClpB protein BMQ_0687 SM00342 helix_turn_helix, arabinose operon control protein BMQ_0696 SM00825 Beta-ketoacyl synthase BMQ_0698 SM00382 ATPases associated with a variety of cellular activities BMQ_0699 SM00382 ATPases associated with a variety of cellular activities BMQ_0708 SM00382 ATPases associated with a variety of cellular activities BMQ_0709 SM00382 ATPases associated with a variety of cellular activities BMQ_0719 SM00155 Phospholipase D. Active site motifs. BMQ_0726 SM01118 BMQ_0726 BMQ_0728 SM00954 Region found in RelA / SpoT proteins BMQ_0732 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_0732 SM00924 MgtE intracellular N domain BMQ_0752 SM01350 BMQ_0752 BMQ_0758 SM00344 helix_turn_helix ASNC type BMQ_0762 SM00487 DEAD-like helicases superfamily BMQ_0762 SM00490 helicase superfamily c-terminal domain BMQ_0766 SM00849 Metallo-beta-lactamase superfamily BMQ_0773 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMQ_0773 SM00387 Histidine kinase-like ATPases BMQ_0774 SM00448 cheY-homologous receiver domain BMQ_0774 SM00850 LytTr DNA-binding domain BMQ_0778 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BMQ_0795 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BMQ_0801 SM00448 cheY-homologous receiver domain BMQ_0802 SM00387 Histidine kinase-like ATPases BMQ_0815 SM00382 ATPases associated with a variety of cellular activities BMQ_0819 SM00382 ATPases associated with a variety of cellular activities BMQ_0835 SM00091 PAS domain BMQ_0835 SM00387 Histidine kinase-like ATPases BMQ_0836 SM00448 cheY-homologous receiver domain BMQ_0843 SM00530 Helix-turn-helix XRE-family like proteins BMQ_0846 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_0851 SM00091 PAS domain BMQ_0851 SM00387 Histidine kinase-like ATPases BMQ_0852 SM00448 cheY-homologous receiver domain BMQ_0859 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_0859 SM00382 ATPases associated with a variety of cellular activities BMQ_0869 SM00382 ATPases associated with a variety of cellular activities BMQ_0869 SM00930 BMQ_0869 BMQ_0878 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BMQ_0878 SM01232 BMQ_0878 BMQ_0886 SM00382 ATPases associated with a variety of cellular activities BMQ_0891 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMQ_0897 SM00899 BMQ_0897 BMQ_0902 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_0903 SM00829 Enoylreductase BMQ_0905 SM00382 ATPases associated with a variety of cellular activities BMQ_0906 SM00382 ATPases associated with a variety of cellular activities BMQ_0911 SM00346 helix_turn_helix isocitrate lyase regulation BMQ_0915 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_0920 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_0921 SM00354 helix_turn _helix lactose operon repressor BMQ_0924 SM00382 ATPases associated with a variety of cellular activities BMQ_0928 SM00903 Flavin reductase like domain BMQ_0935 SM00267 diguanylate cyclase BMQ_0935 SM00448 cheY-homologous receiver domain BMQ_0939 SM00448 cheY-homologous receiver domain BMQ_0940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_0940 SM00387 Histidine kinase-like ATPases BMQ_0940 SM00388 His Kinase A (phosphoacceptor) domain BMQ_0940 SM00448 cheY-homologous receiver domain BMQ_0943 SM00855 Phosphoglycerate mutase family BMQ_0950 SM00354 helix_turn _helix lactose operon repressor BMQ_0957 SM00642 Alpha-amylase domain BMQ_0958 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_0958 SM00866 BMQ_0958 BMQ_0959 SM00796 Allophanate hydrolase subunit 1 BMQ_0960 SM00797 Allophanate hydrolase subunit 2 BMQ_0972 SM00829 Enoylreductase BMQ_0981 SM00357 Cold shock protein domain BMQ_0992 SM00267 diguanylate cyclase BMQ_1000 SM00854 Bacterial capsule synthesis protein PGA_cap BMQ_1047 SM00052 Putative diguanylate phosphodiesterase BMQ_1048 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_1048 SM00091 PAS domain BMQ_1048 SM00267 diguanylate cyclase BMQ_1056 SM00387 Histidine kinase-like ATPases BMQ_1057 SM00448 cheY-homologous receiver domain BMQ_1063 SM00646 BMQ_1063 BMQ_1067 SM00914 BMQ_1067 BMQ_1069 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMQ_1072 SM00382 ATPases associated with a variety of cellular activities BMQ_1080 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_1084 SM00052 Putative diguanylate phosphodiesterase BMQ_1084 SM00267 diguanylate cyclase BMQ_1084 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_1088 SM00052 Putative diguanylate phosphodiesterase BMQ_1088 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_1088 SM00091 PAS domain BMQ_1088 SM00267 diguanylate cyclase BMQ_1102 SM00530 Helix-turn-helix XRE-family like proteins BMQ_1118 SM00984 UDP binding domain BMQ_1139 SM00287 Bacterial SH3 domain homologues BMQ_1139 SM00382 ATPases associated with a variety of cellular activities BMQ_1146 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1146 SM00895 BMQ_1146 BMQ_1161 SM00465 GIY-YIG type nucleases (URI domain) BMQ_1163 SM00835 Cupin BMQ_1172 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1172 SM00866 BMQ_1172 BMQ_1178 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1184 SM00382 ATPases associated with a variety of cellular activities BMQ_1185 SM01091 Transporter associated domain BMQ_1186 SM00422 helix_turn_helix, mercury resistance BMQ_1209 SM00387 Histidine kinase-like ATPases BMQ_1210 SM00448 cheY-homologous receiver domain BMQ_1210 SM00850 LytTr DNA-binding domain BMQ_1211 SM00382 ATPases associated with a variety of cellular activities BMQ_1215 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1220 SM00098 Alkaline phosphatase homologues BMQ_1221 SM00448 cheY-homologous receiver domain BMQ_1221 SM00850 LytTr DNA-binding domain BMQ_1222 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_1222 SM00091 PAS domain BMQ_1222 SM00387 Histidine kinase-like ATPases BMQ_1222 SM00388 His Kinase A (phosphoacceptor) domain BMQ_1222 SM00448 cheY-homologous receiver domain BMQ_1230 SM00822 BMQ_1230 BMQ_1236 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_1237 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1237 SM00895 BMQ_1237 BMQ_1243 SM00091 PAS domain BMQ_1243 SM00387 Histidine kinase-like ATPases BMQ_1243 SM00388 His Kinase A (phosphoacceptor) domain BMQ_1252 SM01007 Class II Aldolase and Adducin N-terminal domain BMQ_1255 SM00382 ATPases associated with a variety of cellular activities BMQ_1261 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1263 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_1263 SM00091 PAS domain BMQ_1263 SM00387 Histidine kinase-like ATPases BMQ_1263 SM00388 His Kinase A (phosphoacceptor) domain BMQ_1265 SM00382 ATPases associated with a variety of cellular activities BMQ_1265 SM01086 C-terminal, D2-small domain, of ClpB protein BMQ_1284 SM00257 Lysin motif BMQ_1293 SM01018 B12 binding domain BMQ_1301 SM01061 CAT RNA binding domain BMQ_1313 SM00914 BMQ_1313 BMQ_1316 SM00260 Two component signalling adaptor domain BMQ_1316 SM00448 cheY-homologous receiver domain BMQ_1318 SM00257 Lysin motif BMQ_1324 SM00052 Putative diguanylate phosphodiesterase BMQ_1336 SM01350 BMQ_1336 BMQ_1337 SM00382 ATPases associated with a variety of cellular activities BMQ_1338 SM00382 ATPases associated with a variety of cellular activities BMQ_1340 SM00849 Metallo-beta-lactamase superfamily BMQ_1347 SM00861 Transketolase, pyrimidine binding domain BMQ_1359 SM00838 Elongation factor G C-terminus BMQ_1365 SM00670 Large family of predicted nucleotide-binding domains BMQ_1369 SM00878 Biotin carboxylase C-terminal domain BMQ_1378 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_1385 SM00851 MGS-like domain BMQ_1393 SM00479 BMQ_1393 BMQ_1393 SM00487 DEAD-like helicases superfamily BMQ_1393 SM00491 BMQ_1393 BMQ_1400 SM00478 endonuclease III BMQ_1400 SM00525 BMQ_1400 BMQ_1423 SM00357 Cold shock protein domain BMQ_1426 SM00267 diguanylate cyclase BMQ_1428 SM00487 DEAD-like helicases superfamily BMQ_1428 SM00490 helicase superfamily c-terminal domain BMQ_1437 SM00387 Histidine kinase-like ATPases BMQ_1438 SM00421 helix_turn_helix, Lux Regulon BMQ_1438 SM00448 cheY-homologous receiver domain BMQ_1439 SM00642 Alpha-amylase domain BMQ_1440 SM00981 BMQ_1440 BMQ_1446 SM00382 ATPases associated with a variety of cellular activities BMQ_1448 SM00491 BMQ_1448 BMQ_1468 SM00357 Cold shock protein domain BMQ_1471 SM00028 Tetratricopeptide repeats BMQ_1477 SM00382 ATPases associated with a variety of cellular activities BMQ_1481 SM00382 ATPases associated with a variety of cellular activities BMQ_1485 SM00052 Putative diguanylate phosphodiesterase BMQ_1485 SM00091 PAS domain BMQ_1485 SM00267 diguanylate cyclase BMQ_1490 SM00421 helix_turn_helix, Lux Regulon BMQ_1490 SM00448 cheY-homologous receiver domain BMQ_1495 SM00155 Phospholipase D. Active site motifs. BMQ_1498 SM00257 Lysin motif BMQ_1498 SM00636 BMQ_1498 BMQ_1510 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1510 SM00866 BMQ_1510 BMQ_1515 SM00098 Alkaline phosphatase homologues BMQ_1519 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1522 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1529 SM00382 ATPases associated with a variety of cellular activities BMQ_1538 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMQ_1542 SM00382 ATPases associated with a variety of cellular activities BMQ_1545 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMQ_1545 SM00387 Histidine kinase-like ATPases BMQ_1545 SM00388 His Kinase A (phosphoacceptor) domain BMQ_1545 SM00448 cheY-homologous receiver domain BMQ_1546 SM00138 Methyltransferase, chemotaxis proteins BMQ_1547 SM00331 Sigma factor PP2C-like phosphatases BMQ_1547 SM00448 cheY-homologous receiver domain BMQ_1550 SM00100 Cyclic nucleotide-monophosphate binding domain BMQ_1555 SM00640 Glycosyl hydrolases family 32 BMQ_1565 SM00849 Metallo-beta-lactamase superfamily BMQ_1572 SM00849 Metallo-beta-lactamase superfamily BMQ_1582 SM00354 helix_turn _helix lactose operon repressor BMQ_1584 SM00640 Glycosyl hydrolases family 32 BMQ_1587 SM00382 ATPases associated with a variety of cellular activities BMQ_1592 SM00640 Glycosyl hydrolases family 32 BMQ_1595 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_1597 SM00382 ATPases associated with a variety of cellular activities BMQ_1597 SM00930 BMQ_1597 BMQ_1608 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1608 SM00866 BMQ_1608 BMQ_1618 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1620 SM01329 BMQ_1620 BMQ_1624 SM00382 ATPases associated with a variety of cellular activities BMQ_1633 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1644 SM00861 Transketolase, pyrimidine binding domain BMQ_1646 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1646 SM00895 BMQ_1646 BMQ_1679 SM00342 helix_turn_helix, arabinose operon control protein BMQ_1679 SM00871 Bacterial transcription activator, effector binding domain BMQ_1690 SM00091 PAS domain BMQ_1691 SM00344 helix_turn_helix ASNC type BMQ_1699 SM00357 Cold shock protein domain BMQ_1701 SM00487 DEAD-like helicases superfamily BMQ_1701 SM00490 helicase superfamily c-terminal domain BMQ_1703 SM00357 Cold shock protein domain BMQ_1718 SM00382 ATPases associated with a variety of cellular activities BMQ_1719 SM00382 ATPases associated with a variety of cellular activities BMQ_1723 SM00387 Histidine kinase-like ATPases BMQ_1726 SM00257 Lysin motif BMQ_1726 SM00636 BMQ_1726 BMQ_1730 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1736 SM00849 Metallo-beta-lactamase superfamily BMQ_1740 SM00710 Parallel beta-helix repeats BMQ_1741 SM00382 ATPases associated with a variety of cellular activities BMQ_1742 SM00226 Low molecular weight phosphatase family BMQ_1744 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_1745 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_1750 SM00014 Acid phosphatase homologues BMQ_1757 SM01060 BMQ_1757 BMQ_1771 SM00387 Histidine kinase-like ATPases BMQ_1771 SM00388 His Kinase A (phosphoacceptor) domain BMQ_1771 SM00448 cheY-homologous receiver domain BMQ_1772 SM00448 cheY-homologous receiver domain BMQ_1772 SM00850 LytTr DNA-binding domain BMQ_1773 SM00354 helix_turn _helix lactose operon repressor BMQ_1791 SM00422 helix_turn_helix, mercury resistance BMQ_1792 SM00357 Cold shock protein domain BMQ_1804 SM00342 helix_turn_helix, arabinose operon control protein BMQ_1806 SM01120 BMQ_1806 BMQ_1812 SM00822 BMQ_1812 BMQ_1822 SM00357 Cold shock protein domain BMQ_1824 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1832 SM00798 AICARFT/IMPCHase bienzyme BMQ_1839 SM00860 SMI1 / KNR4 family BMQ_1855 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BMQ_1859 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_1880 SM00861 Transketolase, pyrimidine binding domain BMQ_1883 SM00382 ATPases associated with a variety of cellular activities BMQ_1887 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_1888 SM00858 BMQ_1888 BMQ_1889 SM00382 ATPases associated with a variety of cellular activities BMQ_1890 SM01130 BMQ_1890 BMQ_1893 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMQ_1894 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1894 SM00895 BMQ_1894 BMQ_1904 SM00914 BMQ_1904 BMQ_1906 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_1906 SM00387 Histidine kinase-like ATPases BMQ_1906 SM00388 His Kinase A (phosphoacceptor) domain BMQ_1907 SM00448 cheY-homologous receiver domain BMQ_1907 SM00862 Transcriptional regulatory protein, C terminal BMQ_1919 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_1923 SM00855 Phosphoglycerate mutase family BMQ_1943 SM00530 Helix-turn-helix XRE-family like proteins BMQ_1945 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BMQ_1945 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BMQ_1945 SM00493 BMQ_1945 BMQ_1947 SM00860 SMI1 / KNR4 family BMQ_1948 SM00248 ankyrin repeats BMQ_1951 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BMQ_1959 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_1959 SM00895 BMQ_1959 BMQ_1960 SM01329 BMQ_1960 BMQ_1965 SM00028 Tetratricopeptide repeats BMQ_1965 SM00530 Helix-turn-helix XRE-family like proteins BMQ_1973 SM00450 Rhodanese Homology Domain BMQ_1985 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_1986 SM00382 ATPases associated with a variety of cellular activities BMQ_1987 SM00567 E-Z type HEAT repeats BMQ_1987 SM00932 Scaffold protein Nfu/NifU N terminal BMQ_1999 SM00855 Phosphoglycerate mutase family BMQ_2003 SM00422 helix_turn_helix, mercury resistance BMQ_2005 SM00833 Cobalamin synthesis protein cobW C-terminal domain BMQ_2007 SM00465 GIY-YIG type nucleases (URI domain) BMQ_2009 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BMQ_2009 SM00475 5'-3' exonuclease BMQ_2018 SM00966 SpoVT / AbrB like domain BMQ_2034 SM00387 Histidine kinase-like ATPases BMQ_2034 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2037 SM00642 Alpha-amylase domain BMQ_2048 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2052 SM00448 cheY-homologous receiver domain BMQ_2052 SM00862 Transcriptional regulatory protein, C terminal BMQ_2053 SM00387 Histidine kinase-like ATPases BMQ_2053 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2057 SM00919 Malic enzyme, NAD binding domain BMQ_2057 SM01274 BMQ_2057 BMQ_2064 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_2067 SM00382 ATPases associated with a variety of cellular activities BMQ_2068 SM00904 Riboflavin kinase BMQ_2071 SM00646 BMQ_2071 BMQ_2074 SM00644 BMQ_2074 BMQ_2080 SM00919 Malic enzyme, NAD binding domain BMQ_2080 SM01274 BMQ_2080 BMQ_2090 SM00422 helix_turn_helix, mercury resistance BMQ_2106 SM00155 Phospholipase D. Active site motifs. BMQ_2108 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_2118 SM00448 cheY-homologous receiver domain BMQ_2118 SM00862 Transcriptional regulatory protein, C terminal BMQ_2119 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_2119 SM00387 Histidine kinase-like ATPases BMQ_2119 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2125 SM00382 ATPases associated with a variety of cellular activities BMQ_2130 SM00420 helix_turn_helix, Deoxyribose operon repressor BMQ_2130 SM01134 BMQ_2130 BMQ_2137 SM00422 helix_turn_helix, mercury resistance BMQ_2139 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_2145 SM00257 Lysin motif BMQ_2146 SM00354 helix_turn _helix lactose operon repressor BMQ_2162 SM00530 Helix-turn-helix XRE-family like proteins BMQ_2166 SM00382 ATPases associated with a variety of cellular activities BMQ_2167 SM00327 von Willebrand factor (vWF) type A domain BMQ_2169 SM01038 Beta galactosidase small chain BMQ_2170 SM00342 helix_turn_helix, arabinose operon control protein BMQ_2174 SM00382 ATPases associated with a variety of cellular activities BMQ_2189 SM00448 cheY-homologous receiver domain BMQ_2189 SM00862 Transcriptional regulatory protein, C terminal BMQ_2190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_2190 SM00387 Histidine kinase-like ATPases BMQ_2190 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2191 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2198 SM00530 Helix-turn-helix XRE-family like proteins BMQ_2206 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_2213 SM00342 helix_turn_helix, arabinose operon control protein BMQ_2215 SM00382 ATPases associated with a variety of cellular activities BMQ_2220 SM00382 ATPases associated with a variety of cellular activities BMQ_2224 SM00354 helix_turn _helix lactose operon repressor BMQ_2230 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BMQ_2230 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BMQ_2230 SM00493 BMQ_2230 BMQ_2238 SM00155 Phospholipase D. Active site motifs. BMQ_2257 SM00341 Helicase and RNase D C-terminal BMQ_2257 SM00487 DEAD-like helicases superfamily BMQ_2257 SM00490 helicase superfamily c-terminal domain BMQ_2257 SM00956 BMQ_2257 BMQ_2258 SM00091 PAS domain BMQ_2258 SM00382 ATPases associated with a variety of cellular activities BMQ_2262 SM00490 helicase superfamily c-terminal domain BMQ_2264 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BMQ_2269 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2270 SM00382 ATPases associated with a variety of cellular activities BMQ_2276 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_2279 SM00849 Metallo-beta-lactamase superfamily BMQ_2282 SM00257 Lysin motif BMQ_2283 SM00382 ATPases associated with a variety of cellular activities BMQ_2286 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_2286 SM00138 Methyltransferase, chemotaxis proteins BMQ_2286 SM00387 Histidine kinase-like ATPases BMQ_2286 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2288 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BMQ_2304 SM00028 Tetratricopeptide repeats BMQ_2307 SM01266 BMQ_2307 BMQ_2315 SM00479 BMQ_2315 BMQ_2321 SM00641 Glycosyl hydrolases family 25 BMQ_2351 SM00091 PAS domain BMQ_2351 SM00387 Histidine kinase-like ATPases BMQ_2351 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2354 SM00822 BMQ_2354 BMQ_2365 SM00829 Enoylreductase BMQ_2369 SM00882 Coenzyme A transferase BMQ_2370 SM00882 Coenzyme A transferase BMQ_2380 SM00849 Metallo-beta-lactamase superfamily BMQ_2398 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_2402 SM00382 ATPases associated with a variety of cellular activities BMQ_2408 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2408 SM00866 BMQ_2408 BMQ_2411 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_2412 SM00849 Metallo-beta-lactamase superfamily BMQ_2414 SM00450 Rhodanese Homology Domain BMQ_2426 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_2427 SM00641 Glycosyl hydrolases family 25 BMQ_2430 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2435 SM00849 Metallo-beta-lactamase superfamily BMQ_2437 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMQ_2440 SM00382 ATPases associated with a variety of cellular activities BMQ_2458 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_2464 SM00479 BMQ_2464 BMQ_2470 SM00838 Elongation factor G C-terminus BMQ_2470 SM00889 Elongation factor G, domain IV BMQ_2478 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BMQ_2478 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_2485 SM00346 helix_turn_helix isocitrate lyase regulation BMQ_2486 SM00878 Biotin carboxylase C-terminal domain BMQ_2488 SM00797 Allophanate hydrolase subunit 2 BMQ_2489 SM00796 Allophanate hydrolase subunit 1 BMQ_2493 SM00642 Alpha-amylase domain BMQ_2499 SM00487 DEAD-like helicases superfamily BMQ_2499 SM00490 helicase superfamily c-terminal domain BMQ_2502 SM00421 helix_turn_helix, Lux Regulon BMQ_2502 SM00448 cheY-homologous receiver domain BMQ_2503 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMQ_2506 SM00530 Helix-turn-helix XRE-family like proteins BMQ_2508 SM00773 Proposed nucleic acid binding domain BMQ_2512 SM01131 BMQ_2512 BMQ_2515 SM00563 Phosphate acyltransferases BMQ_2526 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_2543 SM00434 DNA Topoisomerase IV BMQ_2544 SM00387 Histidine kinase-like ATPases BMQ_2544 SM00433 TopoisomeraseII BMQ_2545 SM00881 CoA binding domain BMQ_2546 SM01207 BMQ_2546 BMQ_2561 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BMQ_2568 SM01092 CO dehydrogenase flavoprotein C-terminal domain BMQ_2569 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BMQ_2582 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_2595 SM00422 helix_turn_helix, mercury resistance BMQ_2597 SM00947 Carbonic anhydrase BMQ_2599 SM00448 cheY-homologous receiver domain BMQ_2599 SM00862 Transcriptional regulatory protein, C terminal BMQ_2600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_2600 SM00387 Histidine kinase-like ATPases BMQ_2600 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2603 SM00860 SMI1 / KNR4 family BMQ_2627 SM00914 BMQ_2627 BMQ_2633 SM00919 Malic enzyme, NAD binding domain BMQ_2633 SM01274 BMQ_2633 BMQ_2636 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMQ_2651 SM00914 BMQ_2651 BMQ_2656 SM00382 ATPases associated with a variety of cellular activities BMQ_2658 SM00421 helix_turn_helix, Lux Regulon BMQ_2658 SM00448 cheY-homologous receiver domain BMQ_2672 SM00382 ATPases associated with a variety of cellular activities BMQ_2676 SM00248 ankyrin repeats BMQ_2690 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_2695 SM00420 helix_turn_helix, Deoxyribose operon repressor BMQ_2695 SM01134 BMQ_2695 BMQ_2705 SM00382 ATPases associated with a variety of cellular activities BMQ_2708 SM00357 Cold shock protein domain BMQ_2709 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2711 SM00357 Cold shock protein domain BMQ_2718 SM00829 Enoylreductase BMQ_2720 SM00850 LytTr DNA-binding domain BMQ_2723 SM00257 Lysin motif BMQ_2727 SM00835 Cupin BMQ_2731 SM00014 Acid phosphatase homologues BMQ_2749 SM00860 SMI1 / KNR4 family BMQ_2752 SM00382 ATPases associated with a variety of cellular activities BMQ_2757 SM00354 helix_turn _helix lactose operon repressor BMQ_2770 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_2779 SM01133 BMQ_2779 BMQ_2780 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BMQ_2786 SM00641 Glycosyl hydrolases family 25 BMQ_2789 SM01207 BMQ_2789 BMQ_2793 SM00849 Metallo-beta-lactamase superfamily BMQ_2803 SM00854 Bacterial capsule synthesis protein PGA_cap BMQ_2805 SM00052 Putative diguanylate phosphodiesterase BMQ_2819 SM00829 Enoylreductase BMQ_2820 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2820 SM00895 BMQ_2820 BMQ_2825 SM01091 Transporter associated domain BMQ_2830 SM00382 ATPases associated with a variety of cellular activities BMQ_2831 SM00382 ATPases associated with a variety of cellular activities BMQ_2840 SM00318 Staphylococcal nuclease homologues BMQ_2841 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BMQ_2855 SM00346 helix_turn_helix isocitrate lyase regulation BMQ_2866 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2866 SM00895 BMQ_2866 BMQ_2871 SM00382 ATPases associated with a variety of cellular activities BMQ_2891 SM00387 Histidine kinase-like ATPases BMQ_2891 SM00388 His Kinase A (phosphoacceptor) domain BMQ_2892 SM00448 cheY-homologous receiver domain BMQ_2892 SM00862 Transcriptional regulatory protein, C terminal BMQ_2897 SM00861 Transketolase, pyrimidine binding domain BMQ_2905 SM00871 Bacterial transcription activator, effector binding domain BMQ_2909 SM00382 ATPases associated with a variety of cellular activities BMQ_2910 SM00382 ATPases associated with a variety of cellular activities BMQ_2914 SM00938 Nitrogen regulatory protein P-II BMQ_2926 SM01324 BMQ_2926 BMQ_2933 SM00382 ATPases associated with a variety of cellular activities BMQ_2942 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMQ_2943 SM00354 helix_turn _helix lactose operon repressor BMQ_2951 SM00563 Phosphate acyltransferases BMQ_2959 SM00988 UreE urease accessory protein, N-terminal domain BMQ_2964 SM00257 Lysin motif BMQ_2965 SM00257 Lysin motif BMQ_2974 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_2979 SM00382 ATPases associated with a variety of cellular activities BMQ_2991 SM01091 Transporter associated domain BMQ_2993 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_3001 SM00830 Chorismate mutase type II BMQ_3011 SM01060 BMQ_3011 BMQ_3024 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_3031 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_3037 SM00287 Bacterial SH3 domain homologues BMQ_3037 SM00646 BMQ_3037 BMQ_3039 SM00966 SpoVT / AbrB like domain BMQ_3042 SM00240 Forkhead associated domain BMQ_3042 SM00862 Transcriptional regulatory protein, C terminal BMQ_3050 SM00046 Diacylglycerol kinase catalytic domain (presumed) BMQ_3056 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_3060 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_3060 SM00091 PAS domain BMQ_3072 SM00422 helix_turn_helix, mercury resistance BMQ_3075 SM00870 BMQ_3075 BMQ_3076 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3080 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_3090 SM00919 Malic enzyme, NAD binding domain BMQ_3090 SM01274 BMQ_3090 BMQ_3101 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_3102 SM00422 helix_turn_helix, mercury resistance BMQ_3136 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_3141 SM00257 Lysin motif BMQ_3141 SM00646 BMQ_3141 BMQ_3155 SM00829 Enoylreductase BMQ_3158 SM00871 Bacterial transcription activator, effector binding domain BMQ_3180 SM00357 Cold shock protein domain BMQ_3192 SM00382 ATPases associated with a variety of cellular activities BMQ_3195 SM00257 Lysin motif BMQ_3199 SM00829 Enoylreductase BMQ_3200 SM00829 Enoylreductase BMQ_3211 SM00420 helix_turn_helix, Deoxyribose operon repressor BMQ_3211 SM01134 BMQ_3211 BMQ_3214 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BMQ_3214 SM00534 ATPase domain of DNA mismatch repair MUTS family BMQ_3217 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3219 SM00354 helix_turn _helix lactose operon repressor BMQ_3222 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_3246 SM00342 helix_turn_helix, arabinose operon control protein BMQ_3248 SM00421 helix_turn_helix, Lux Regulon BMQ_3248 SM00448 cheY-homologous receiver domain BMQ_3260 SM01350 BMQ_3260 BMQ_3261 SM00861 Transketolase, pyrimidine binding domain BMQ_3264 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMQ_3270 SM00382 ATPases associated with a variety of cellular activities BMQ_3272 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_3272 SM00387 Histidine kinase-like ATPases BMQ_3272 SM00388 His Kinase A (phosphoacceptor) domain BMQ_3273 SM00448 cheY-homologous receiver domain BMQ_3273 SM00862 Transcriptional regulatory protein, C terminal BMQ_3277 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMQ_3277 SM00387 Histidine kinase-like ATPases BMQ_3277 SM00388 His Kinase A (phosphoacceptor) domain BMQ_3283 SM00422 helix_turn_helix, mercury resistance BMQ_3289 SM00342 helix_turn_helix, arabinose operon control protein BMQ_3298 SM00382 ATPases associated with a variety of cellular activities BMQ_3318 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_3319 SM00382 ATPases associated with a variety of cellular activities BMQ_3328 SM00829 Enoylreductase BMQ_3329 SM00448 cheY-homologous receiver domain BMQ_3329 SM00862 Transcriptional regulatory protein, C terminal BMQ_3330 SM00387 Histidine kinase-like ATPases BMQ_3331 SM00382 ATPases associated with a variety of cellular activities BMQ_3339 SM00450 Rhodanese Homology Domain BMQ_3339 SM00849 Metallo-beta-lactamase superfamily BMQ_3340 SM00450 Rhodanese Homology Domain BMQ_3341 SM00450 Rhodanese Homology Domain BMQ_3342 SM00450 Rhodanese Homology Domain BMQ_3352 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_3352 SM00866 BMQ_3352 BMQ_3357 SM00894 Excalibur calcium-binding domain BMQ_3359 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3399 SM00357 Cold shock protein domain BMQ_3401 SM00357 Cold shock protein domain BMQ_3406 SM00382 ATPases associated with a variety of cellular activities BMQ_3407 SM00382 ATPases associated with a variety of cellular activities BMQ_3412 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_3430 SM01001 AIR carboxylase BMQ_3439 SM00382 ATPases associated with a variety of cellular activities BMQ_3458 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3464 SM00354 helix_turn _helix lactose operon repressor BMQ_3472 SM00420 helix_turn_helix, Deoxyribose operon repressor BMQ_3472 SM01134 BMQ_3472 BMQ_3479 SM00829 Enoylreductase BMQ_3480 SM00422 helix_turn_helix, mercury resistance BMQ_3488 SM00357 Cold shock protein domain BMQ_3490 SM00287 Bacterial SH3 domain homologues BMQ_3503 SM00631 BMQ_3503 BMQ_3515 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_3515 SM00895 BMQ_3515 BMQ_3521 SM00420 helix_turn_helix, Deoxyribose operon repressor BMQ_3521 SM01134 BMQ_3521 BMQ_3528 SM00460 Transglutaminase/protease-like homologues BMQ_3533 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3541 SM01007 Class II Aldolase and Adducin N-terminal domain BMQ_3543 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_3544 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_3550 SM00899 BMQ_3550 BMQ_3556 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_3588 SM00859 Semialdehyde dehydrogenase, NAD binding domain BMQ_3597 SM00100 Cyclic nucleotide-monophosphate binding domain BMQ_3600 SM00422 helix_turn_helix, mercury resistance BMQ_3605 SM00028 Tetratricopeptide repeats BMQ_3616 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3632 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMQ_3635 SM00346 helix_turn_helix isocitrate lyase regulation BMQ_3636 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3639 SM00382 ATPases associated with a variety of cellular activities BMQ_3644 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_3644 SM00866 BMQ_3644 BMQ_3651 SM00829 Enoylreductase BMQ_3658 SM00100 Cyclic nucleotide-monophosphate binding domain BMQ_3665 SM00344 helix_turn_helix ASNC type BMQ_3674 SM00877 BMQ_3674 BMQ_3678 SM00877 BMQ_3678 BMQ_3680 SM00877 BMQ_3680 BMQ_3685 SM00877 BMQ_3685 BMQ_3687 SM00448 cheY-homologous receiver domain BMQ_3687 SM01012 BMQ_3687 BMQ_3688 SM00387 Histidine kinase-like ATPases BMQ_3697 SM00354 helix_turn _helix lactose operon repressor BMQ_3698 SM01130 BMQ_3698 BMQ_3734 SM00860 SMI1 / KNR4 family BMQ_3736 SM00870 BMQ_3736 BMQ_3748 SM00919 Malic enzyme, NAD binding domain BMQ_3748 SM01274 BMQ_3748 BMQ_3772 SM00248 ankyrin repeats BMQ_3773 SM00530 Helix-turn-helix XRE-family like proteins BMQ_3775 SM00342 helix_turn_helix, arabinose operon control protein BMQ_3775 SM00871 Bacterial transcription activator, effector binding domain BMQ_3777 SM00871 Bacterial transcription activator, effector binding domain BMQ_3787 SM00852 Probable molybdopterin binding domain BMQ_3789 SM00852 Probable molybdopterin binding domain BMQ_3793 SM00382 ATPases associated with a variety of cellular activities BMQ_3811 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_3815 SM00357 Cold shock protein domain BMQ_3829 SM00052 Putative diguanylate phosphodiesterase BMQ_3829 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_3829 SM00267 diguanylate cyclase BMQ_3836 SM00966 SpoVT / AbrB like domain BMQ_3852 SM00422 helix_turn_helix, mercury resistance BMQ_3855 SM00422 helix_turn_helix, mercury resistance BMQ_3860 SM00640 Glycosyl hydrolases family 32 BMQ_3868 SM00382 ATPases associated with a variety of cellular activities BMQ_3870 SM00387 Histidine kinase-like ATPases BMQ_3870 SM00388 His Kinase A (phosphoacceptor) domain BMQ_3871 SM00448 cheY-homologous receiver domain BMQ_3871 SM00862 Transcriptional regulatory protein, C terminal BMQ_3885 SM00984 UDP binding domain BMQ_3890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BMQ_3891 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_3906 SM00344 helix_turn_helix ASNC type BMQ_3909 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMQ_3910 SM00448 cheY-homologous receiver domain BMQ_3910 SM00862 Transcriptional regulatory protein, C terminal BMQ_3911 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_3911 SM00387 Histidine kinase-like ATPases BMQ_3911 SM00388 His Kinase A (phosphoacceptor) domain BMQ_3914 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_3914 SM00895 BMQ_3914 BMQ_3926 SM00382 ATPases associated with a variety of cellular activities BMQ_3935 SM00354 helix_turn _helix lactose operon repressor BMQ_3936 SM00387 Histidine kinase-like ATPases BMQ_3936 SM00388 His Kinase A (phosphoacceptor) domain BMQ_3941 SM01060 BMQ_3941 BMQ_3963 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_3978 SM00849 Metallo-beta-lactamase superfamily BMQ_3986 SM00257 Lysin motif BMQ_3987 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_3987 SM01091 Transporter associated domain BMQ_4004 SM00382 ATPases associated with a variety of cellular activities BMQ_4005 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_4012 SM00382 ATPases associated with a variety of cellular activities BMQ_4018 SM01061 CAT RNA binding domain BMQ_4028 SM00014 Acid phosphatase homologues BMQ_4031 SM00219 Tyrosine kinase, catalytic domain BMQ_4043 SM00882 Coenzyme A transferase BMQ_4044 SM00882 Coenzyme A transferase BMQ_4048 SM00091 PAS domain BMQ_4048 SM00387 Histidine kinase-like ATPases BMQ_4048 SM00388 His Kinase A (phosphoacceptor) domain BMQ_4055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_4055 SM00387 Histidine kinase-like ATPases BMQ_4055 SM00388 His Kinase A (phosphoacceptor) domain BMQ_4066 SM01006 Siderophore biosynthesis protein domain BMQ_4073 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BMQ_4073 SM00091 PAS domain BMQ_4073 SM00387 Histidine kinase-like ATPases BMQ_4073 SM00388 His Kinase A (phosphoacceptor) domain BMQ_4077 SM00091 PAS domain BMQ_4077 SM00382 ATPases associated with a variety of cellular activities BMQ_4084 SM00382 ATPases associated with a variety of cellular activities BMQ_4085 SM00382 ATPases associated with a variety of cellular activities BMQ_4088 SM00861 Transketolase, pyrimidine binding domain BMQ_4090 SM00857 Resolvase, N terminal domain BMQ_4097 SM00257 Lysin motif BMQ_4097 SM00646 BMQ_4097 BMQ_4099 SM01230 BMQ_4099 BMQ_4100 SM00422 helix_turn_helix, mercury resistance BMQ_4104 SM00382 ATPases associated with a variety of cellular activities BMQ_4107 SM00853 MutL C terminal dimerisation domain BMQ_4107 SM01340 BMQ_4107 BMQ_4108 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BMQ_4108 SM00534 ATPase domain of DNA mismatch repair MUTS family BMQ_4112 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_4118 SM00322 K homology RNA-binding domain BMQ_4118 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_4119 SM00382 ATPases associated with a variety of cellular activities BMQ_4120 SM00852 Probable molybdopterin binding domain BMQ_4122 SM00530 Helix-turn-helix XRE-family like proteins BMQ_4130 SM00382 ATPases associated with a variety of cellular activities BMQ_4132 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_4132 SM00866 BMQ_4132 BMQ_4133 SM00382 ATPases associated with a variety of cellular activities BMQ_4133 SM00843 BMQ_4133 BMQ_4136 SM00849 Metallo-beta-lactamase superfamily BMQ_4137 SM01130 BMQ_4137 BMQ_4139 SM00859 Semialdehyde dehydrogenase, NAD binding domain BMQ_4145 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_4145 SM00322 K homology RNA-binding domain BMQ_4146 SM01387 BMQ_4146 BMQ_4147 SM00904 Riboflavin kinase BMQ_4154 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_4154 SM00322 K homology RNA-binding domain BMQ_4156 SM00479 BMQ_4156 BMQ_4156 SM00481 DNA polymerase alpha chain like domain BMQ_4158 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMQ_4169 SM00260 Two component signalling adaptor domain BMQ_4170 SM00073 Histidine Phosphotransfer domain BMQ_4170 SM00260 Two component signalling adaptor domain BMQ_4170 SM00387 Histidine kinase-like ATPases BMQ_4170 SM01231 BMQ_4170 BMQ_4171 SM00448 cheY-homologous receiver domain BMQ_4173 SM00382 ATPases associated with a variety of cellular activities BMQ_4173 SM00962 SRP54-type protein, GTPase domain BMQ_4180 SM00448 cheY-homologous receiver domain BMQ_4190 SM00382 ATPases associated with a variety of cellular activities BMQ_4198 SM00382 ATPases associated with a variety of cellular activities BMQ_4198 SM01086 C-terminal, D2-small domain, of ClpB protein BMQ_4202 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BMQ_4202 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BMQ_4202 SM00493 BMQ_4202 BMQ_4204 SM00881 CoA binding domain BMQ_4215 SM00382 ATPases associated with a variety of cellular activities BMQ_4215 SM00962 SRP54-type protein, GTPase domain BMQ_4215 SM00963 SRP54-type protein, helical bundle domain BMQ_4217 SM00382 ATPases associated with a variety of cellular activities BMQ_4217 SM00962 SRP54-type protein, GTPase domain BMQ_4217 SM00963 SRP54-type protein, helical bundle domain BMQ_4218 SM00968 SMC proteins Flexible Hinge Domain BMQ_4219 SM00358 Double-stranded RNA binding motif BMQ_4219 SM00535 Ribonuclease III family BMQ_4221 SM00822 BMQ_4221 BMQ_4222 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BMQ_4225 SM00487 DEAD-like helicases superfamily BMQ_4225 SM00490 helicase superfamily c-terminal domain BMQ_4229 SM01120 BMQ_4229 BMQ_4229 SM01121 BMQ_4229 BMQ_4232 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BMQ_4235 SM00220 Serine/Threonine protein kinases, catalytic domain BMQ_4235 SM00740 BMQ_4235 BMQ_4236 SM00331 Sigma factor PP2C-like phosphatases BMQ_4236 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BMQ_4241 SM00487 DEAD-like helicases superfamily BMQ_4241 SM00490 helicase superfamily c-terminal domain BMQ_4243 SM01409 BMQ_4243 BMQ_4244 SM00072 Guanylate kinase homologues. BMQ_4246 SM00831 Cation transporter/ATPase, N-terminus BMQ_4249 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BMQ_4252 SM00851 MGS-like domain BMQ_4252 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BMQ_4252 SM01209 BMQ_4252 BMQ_4253 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BMQ_4258 SM00363 S4 RNA-binding domain BMQ_4263 SM00363 S4 RNA-binding domain BMQ_4272 SM00864 Tubulin/FtsZ family, GTPase domain BMQ_4272 SM00865 Tubulin/FtsZ family, C-terminal domain BMQ_4273 SM00842 Cell division protein FtsA BMQ_4280 SM00740 BMQ_4280 BMQ_4281 SM00740 BMQ_4281 BMQ_4289 SM00878 Biotin carboxylase C-terminal domain BMQ_4296 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMQ_4313 SM00914 BMQ_4313 BMQ_4314 SM00028 Tetratricopeptide repeats BMQ_4326 SM00138 Methyltransferase, chemotaxis proteins BMQ_4327 SM00562 BMQ_4327 BMQ_4333 SM00411 bacterial (prokaryotic) histone like domain BMQ_4343 SM01240 BMQ_4343 BMQ_4344 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_4345 SM00563 Phosphate acyltransferases BMQ_4352 SM00870 BMQ_4352 BMQ_4354 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMQ_4356 SM00422 helix_turn_helix, mercury resistance BMQ_4361 SM00487 DEAD-like helicases superfamily BMQ_4361 SM00490 helicase superfamily c-terminal domain BMQ_4366 SM00257 Lysin motif BMQ_4367 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_4367 SM00387 Histidine kinase-like ATPases BMQ_4367 SM00388 His Kinase A (phosphoacceptor) domain BMQ_4368 SM00448 cheY-homologous receiver domain BMQ_4368 SM00862 Transcriptional regulatory protein, C terminal BMQ_4372 SM00363 S4 RNA-binding domain BMQ_4392 SM00387 Histidine kinase-like ATPases BMQ_4394 SM00936 Penicillin-binding protein 5, C-terminal domain BMQ_4405 SM00882 Coenzyme A transferase BMQ_4406 SM00882 Coenzyme A transferase BMQ_4411 SM00704 CDGSH-type zinc finger. Function unknown. BMQ_4413 SM00849 Metallo-beta-lactamase superfamily BMQ_4430 SM00382 ATPases associated with a variety of cellular activities BMQ_4432 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_4432 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BMQ_4438 SM00861 Transketolase, pyrimidine binding domain BMQ_4442 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMQ_4444 SM00091 PAS domain BMQ_4444 SM00382 ATPases associated with a variety of cellular activities BMQ_4450 SM00448 cheY-homologous receiver domain BMQ_4451 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMQ_4454 SM00363 S4 RNA-binding domain BMQ_4455 SM00861 Transketolase, pyrimidine binding domain BMQ_4461 SM00878 Biotin carboxylase C-terminal domain BMQ_4470 SM00382 ATPases associated with a variety of cellular activities BMQ_4472 SM00841 Elongation factor P, C-terminal BMQ_4472 SM01185 BMQ_4472 BMQ_4479 SM00529 Helix-turn-helix diphteria tox regulatory element BMQ_4482 SM00450 Rhodanese Homology Domain BMQ_4486 SM00487 DEAD-like helicases superfamily BMQ_4486 SM00490 helicase superfamily c-terminal domain BMQ_4495 SM00382 ATPases associated with a variety of cellular activities BMQ_4498 SM00849 Metallo-beta-lactamase superfamily BMQ_4500 SM00631 BMQ_4500 BMQ_4503 SM00028 Tetratricopeptide repeats BMQ_4512 SM00382 ATPases associated with a variety of cellular activities BMQ_4532 SM00382 ATPases associated with a variety of cellular activities BMQ_4534 SM00518 AP endonuclease family 2 BMQ_4535 SM00487 DEAD-like helicases superfamily BMQ_4535 SM00490 helicase superfamily c-terminal domain BMQ_4543 SM00400 zinc finger BMQ_4543 SM00493 BMQ_4543 BMQ_4546 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_4552 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_4553 SM00322 K homology RNA-binding domain BMQ_4557 SM00244 prohibitin homologues BMQ_4561 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_4564 SM00271 DnaJ molecular chaperone homology domain BMQ_4568 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_4569 SM00838 Elongation factor G C-terminus BMQ_4575 SM00849 Metallo-beta-lactamase superfamily BMQ_4577 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMQ_4581 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_4583 SM01103 BMQ_4583 BMQ_4603 SM00382 ATPases associated with a variety of cellular activities BMQ_4609 SM00732 Likely ribonuclease with RNase H fold. BMQ_4611 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BMQ_4616 SM00382 ATPases associated with a variety of cellular activities BMQ_4617 SM00028 Tetratricopeptide repeats BMQ_4621 SM00382 ATPases associated with a variety of cellular activities BMQ_4629 SM00287 Bacterial SH3 domain homologues BMQ_4629 SM00646 BMQ_4629 BMQ_4631 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_4631 SM00954 Region found in RelA / SpoT proteins BMQ_4639 SM01323 BMQ_4639 BMQ_4643 SM00382 ATPases associated with a variety of cellular activities BMQ_4644 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMQ_4649 SM00257 Lysin motif BMQ_4658 SM01317 BMQ_4658 BMQ_4662 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_4680 SM00257 Lysin motif BMQ_4682 SM01004 Delta-aminolevulinic acid dehydratase BMQ_4689 SM00382 ATPases associated with a variety of cellular activities BMQ_4689 SM00464 Found in ATP-dependent protease La (LON) BMQ_4690 SM00382 ATPases associated with a variety of cellular activities BMQ_4691 SM00382 ATPases associated with a variety of cellular activities BMQ_4691 SM00994 ClpX C4-type zinc finger BMQ_4691 SM01086 C-terminal, D2-small domain, of ClpB protein BMQ_4696 SM01329 BMQ_4696 BMQ_4697 SM00917 LeuA allosteric (dimerisation) domain BMQ_4705 SM00909 Sporulation and spore germination BMQ_4707 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_4716 SM00062 Bacterial periplasmic substrate-binding proteins BMQ_4717 SM00382 ATPases associated with a variety of cellular activities BMQ_4721 SM00421 helix_turn_helix, Lux Regulon BMQ_4728 SM00465 GIY-YIG type nucleases (URI domain) BMQ_4730 SM00893 Electron transfer flavoprotein domain BMQ_4731 SM00893 Electron transfer flavoprotein domain BMQ_4737 SM00463 Small MutS-related domain BMQ_4737 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BMQ_4737 SM00534 ATPase domain of DNA mismatch repair MUTS family BMQ_4738 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BMQ_4738 SM00481 DNA polymerase alpha chain like domain BMQ_4738 SM00483 DNA polymerase X family BMQ_4742 SM00873 B3/4 domain BMQ_4742 SM00874 tRNA synthetase B5 domain BMQ_4742 SM00896 Ferredoxin-fold anticodon binding domain BMQ_4744 SM00967 RNA 2'-O ribose methyltransferase substrate binding BMQ_4753 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BMQ_4760 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BMQ_4763 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BMQ_4763 SM01232 BMQ_4763 BMQ_4764 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BMQ_4764 SM00474 3'-5' exonuclease BMQ_4764 SM00475 5'-3' exonuclease BMQ_4764 SM00482 DNA polymerase A domain BMQ_4765 SM00091 PAS domain BMQ_4765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_4765 SM00387 Histidine kinase-like ATPases BMQ_4765 SM00388 His Kinase A (phosphoacceptor) domain BMQ_4766 SM00448 cheY-homologous receiver domain BMQ_4766 SM00862 Transcriptional regulatory protein, C terminal BMQ_4769 SM01329 BMQ_4769 BMQ_4777 SM00345 helix_turn_helix gluconate operon transcriptional repressor BMQ_4778 SM00919 Malic enzyme, NAD binding domain BMQ_4778 SM01274 BMQ_4778 BMQ_4779 SM00481 DNA polymerase alpha chain like domain BMQ_4784 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_4786 SM00849 Metallo-beta-lactamase superfamily BMQ_4787 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BMQ_4787 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BMQ_4803 SM00981 BMQ_4803 BMQ_4808 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BMQ_4810 SM00363 S4 RNA-binding domain BMQ_4810 SM01390 BMQ_4810 BMQ_4811 SM00363 S4 RNA-binding domain BMQ_4814 SM00116 Domain in cystathionine beta-synthase and other proteins. BMQ_4818 SM00354 helix_turn _helix lactose operon repressor BMQ_4819 SM00830 Chorismate mutase type II BMQ_4826 SM00382 ATPases associated with a variety of cellular activities BMQ_4826 SM00843 BMQ_4826 BMQ_4833 SM00849 Metallo-beta-lactamase superfamily BMQ_4837 SM00642 Alpha-amylase domain BMQ_4842 SM00420 helix_turn_helix, Deoxyribose operon repressor BMQ_4843 SM00363 S4 RNA-binding domain BMQ_4847 SM00450 Rhodanese Homology Domain BMQ_4854 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_4859 SM00014 Acid phosphatase homologues BMQ_4866 SM00382 ATPases associated with a variety of cellular activities BMQ_4873 SM01234 BMQ_4873 BMQ_4874 SM00947 Carbonic anhydrase BMQ_4875 SM00833 Cobalamin synthesis protein cobW C-terminal domain BMQ_4887 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BMQ_4899 SM00642 Alpha-amylase domain BMQ_4947 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_4949 SM00344 helix_turn_helix ASNC type BMQ_4954 SM01298 BMQ_4954 BMQ_4955 SM00479 BMQ_4955 BMQ_4958 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_4985 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_4995 SM00382 ATPases associated with a variety of cellular activities BMQ_4999 SM00382 ATPases associated with a variety of cellular activities BMQ_4999 SM00930 BMQ_4999 BMQ_5001 SM00493 BMQ_5001 BMQ_5012 SM00382 ATPases associated with a variety of cellular activities BMQ_5023 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_5023 SM00387 Histidine kinase-like ATPases BMQ_5023 SM00388 His Kinase A (phosphoacceptor) domain BMQ_5024 SM00448 cheY-homologous receiver domain BMQ_5024 SM00862 Transcriptional regulatory protein, C terminal BMQ_5026 SM00014 Acid phosphatase homologues BMQ_5027 SM00347 helix_turn_helix multiple antibiotic resistance protein BMQ_5032 SM00852 Probable molybdopterin binding domain BMQ_5035 SM00729 Elongator protein 3, MiaB family, Radical SAM BMQ_5038 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BMQ_5038 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BMQ_5043 SM00316 Ribosomal protein S1-like RNA-binding domain BMQ_5043 SM00357 Cold shock protein domain BMQ_5043 SM00955 BMQ_5043 BMQ_5046 SM01192 BMQ_5046 BMQ_5046 SM01193 BMQ_5046 BMQ_5050 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BMQ_5063 SM00028 Tetratricopeptide repeats BMQ_5080 SM00382 ATPases associated with a variety of cellular activities BMQ_5081 SM00487 DEAD-like helicases superfamily BMQ_5081 SM00490 helicase superfamily c-terminal domain BMQ_5082 SM00091 PAS domain BMQ_5082 SM00382 ATPases associated with a variety of cellular activities BMQ_5086 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMQ_5087 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMQ_5087 SM00245 tail specific protease BMQ_5090 SM00382 ATPases associated with a variety of cellular activities BMQ_5096 SM00937 BMQ_5096 BMQ_5097 SM00957 SecA DEAD-like domain BMQ_5097 SM00958 SecA preprotein cross-linking domain BMQ_5117 SM00487 DEAD-like helicases superfamily BMQ_5117 SM00490 helicase superfamily c-terminal domain BMQ_5121 SM00421 helix_turn_helix, Lux Regulon BMQ_5121 SM00448 cheY-homologous receiver domain BMQ_5122 SM00387 Histidine kinase-like ATPases BMQ_5127 SM00244 prohibitin homologues BMQ_5129 SM00984 UDP binding domain BMQ_5132 SM00487 DEAD-like helicases superfamily BMQ_5132 SM00490 helicase superfamily c-terminal domain BMQ_5133 SM00257 Lysin motif BMQ_5136 SM00530 Helix-turn-helix XRE-family like proteins BMQ_5148 SM00382 ATPases associated with a variety of cellular activities BMQ_5163 SM00226 Low molecular weight phosphatase family BMQ_5169 SM00937 BMQ_5169 BMQ_5172 SM00357 Cold shock protein domain BMQ_5172 SM00382 ATPases associated with a variety of cellular activities BMQ_5172 SM00959 Rho termination factor, N-terminal domain BMQ_5176 SM00448 cheY-homologous receiver domain BMQ_5187 SM00155 Phospholipase D. Active site motifs. BMQ_5189 SM00836 DALR anticodon binding domain BMQ_5189 SM01016 Arginyl tRNA synthetase N terminal dom BMQ_5198 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BMQ_5208 SM00986 Uracil DNA glycosylase superfamily BMQ_5208 SM00987 UreE urease accessory protein, C-terminal domain BMQ_5211 SM01350 BMQ_5211 BMQ_5213 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BMQ_5213 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BMQ_5228 SM00382 ATPases associated with a variety of cellular activities BMQ_5229 SM00382 ATPases associated with a variety of cellular activities BMQ_5234 SM00354 helix_turn _helix lactose operon repressor BMQ_5240 SM01060 BMQ_5240 BMQ_5241 SM00642 Alpha-amylase domain BMQ_5243 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BMQ_5245 SM00448 cheY-homologous receiver domain BMQ_5245 SM00862 Transcriptional regulatory protein, C terminal BMQ_5246 SM00387 Histidine kinase-like ATPases BMQ_5246 SM00388 His Kinase A (phosphoacceptor) domain BMQ_5252 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BMQ_5253 SM00849 Metallo-beta-lactamase superfamily BMQ_5256 SM00091 PAS domain BMQ_5256 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_5256 SM00387 Histidine kinase-like ATPases BMQ_5256 SM00388 His Kinase A (phosphoacceptor) domain BMQ_5257 SM00448 cheY-homologous receiver domain BMQ_5257 SM00862 Transcriptional regulatory protein, C terminal BMQ_5262 SM00788 Adenylosuccinate synthetase BMQ_5265 SM00267 diguanylate cyclase BMQ_5275 SM00470 ParB-like nuclease domain BMQ_5277 SM00470 ParB-like nuclease domain BMQ_5279 SM01228 BMQ_5279 BMQ_5281 SM00393 Putative single-stranded nucleic acids-binding domain BMQ_5281 SM01245 BMQ_5281 BMQ_pBM10004 SM00530 Helix-turn-helix XRE-family like proteins BMQ_pBM10006 SM00530 Helix-turn-helix XRE-family like proteins BMQ_pBM10007 SM00421 helix_turn_helix, Lux Regulon BMQ_pBM30024 SM00857 Resolvase, N terminal domain BMQ_pBM40051 SM00914 BMQ_pBM40051 BMQ_pBM40060 SM00864 Tubulin/FtsZ family, GTPase domain BMQ_pBM50027 SM00530 Helix-turn-helix XRE-family like proteins BMQ_pBM50048 SM00825 Beta-ketoacyl synthase BMQ_pBM50053 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BMQ_pBM50060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_pBM50070 SM00530 Helix-turn-helix XRE-family like proteins BMQ_pBM50083 SM00422 helix_turn_helix, mercury resistance BMQ_pBM60083 SM00342 helix_turn_helix, arabinose operon control protein BMQ_pBM60083 SM00871 Bacterial transcription activator, effector binding domain BMQ_pBM70012 SM00860 SMI1 / KNR4 family BMQ_pBM70015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BMQ_pBM70017 SM00382 ATPases associated with a variety of cellular activities BMQ_pBM70022 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BMQ_pBM70027 SM00357 Cold shock protein domain BMQ_pBM70028 SM00422 helix_turn_helix, mercury resistance BMQ_pBM70034 SM00420 helix_turn_helix, Deoxyribose operon repressor BMQ_pBM70034 SM01134 BMQ_pBM70034 BMQ_pBM70043 SM00342 helix_turn_helix, arabinose operon control protein BMQ_pBM70048 SM00357 Cold shock protein domain BMQ_pBM70064 SM00563 Phosphate acyltransferases BMQ_pBM70087 SM00966 SpoVT / AbrB like domain BMQ_pBM70092 SM00857 Resolvase, N terminal domain BMQ_pBM70106 SM00855 Phosphoglycerate mutase family BMQ_pBM70118 SM00530 Helix-turn-helix XRE-family like proteins BMQ_pBM70119 SM00825 Beta-ketoacyl synthase BMQ_pBM70124 SM00342 helix_turn_helix, arabinose operon control protein BMQ_pBM70125 SM00357 Cold shock protein domain BMQ_pBM70128 SM00966 SpoVT / AbrB like domain BMQ_pBM70140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BMQ_pBM70140 SM00387 Histidine kinase-like ATPases BMQ_pBM70140 SM00388 His Kinase A (phosphoacceptor) domain BMQ_pBM70141 SM00448 cheY-homologous receiver domain BMQ_pBM70141 SM00862 Transcriptional regulatory protein, C terminal BMQ_pBM70143 SM00382 ATPases associated with a variety of cellular activities BMQ_pBM70146 SM00382 ATPases associated with a variety of cellular activities BMQ_pBM70148 SM01260 BMQ_pBM70148 BMQ_pBM70149 SM00382 ATPases associated with a variety of cellular activities BMQ_pBM70155 SM00387 Histidine kinase-like ATPases BMQ_pBM70156 SM00421 helix_turn_helix, Lux Regulon BMQ_pBM70156 SM00448 cheY-homologous receiver domain