locus-tag class description C2I28_00025 PF10502 Signal peptidase, peptidase S26 C2I28_00055 PF01381 Helix-turn-helix C2I28_00065 PF01037 Lrp/AsnC ligand binding domain C2I28_00070 PF00561 alpha/beta hydrolase fold C2I28_00085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C2I28_00090 PF00561 alpha/beta hydrolase fold C2I28_00100 PF00857 Isochorismatase family C2I28_00105 PF03358 NADPH-dependent FMN reductase C2I28_00110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_00115 PF07681 DoxX C2I28_00125 PF03033 Glycosyltransferase family 28 N-terminal domain C2I28_00125 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase C2I28_00130 PF02028 BCCT, betaine/carnitine/choline family transporter C2I28_00135 PF00999 Sodium/hydrogen exchanger family C2I28_00165 PF07690 Major Facilitator Superfamily C2I28_00180 PF07690 Major Facilitator Superfamily C2I28_00185 PF00440 Bacterial regulatory proteins, tetR family C2I28_00195 PF06150 ChaB C2I28_00200 PF00251 Glycosyl hydrolases family 32 N-terminal domain C2I28_00200 PF08244 Glycosyl hydrolases family 32 C terminal C2I28_00205 PF00128 Alpha amylase, catalytic domain C2I28_00210 PF00356 Bacterial regulatory proteins, lacI family C2I28_00215 PF01306 LacY proton/sugar symporter C2I28_00240 PF00465 Iron-containing alcohol dehydrogenase C2I28_00265 PF02517 CPBP intramembrane metalloprotease C2I28_00270 PF00155 Aminotransferase class I and II C2I28_00275 PF00561 alpha/beta hydrolase fold C2I28_00280 PF13649 Methyltransferase domain C2I28_00285 PF00367 phosphotransferase system, EIIB C2I28_00285 PF02378 Phosphotransferase system, EIIC C2I28_00290 PF13580 SIS domain C2I28_00295 PF00710 Asparaginase, N-terminal C2I28_00295 PF17763 Glutaminase/Asparaginase C-terminal domain C2I28_00310 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C2I28_00310 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C2I28_00325 PF03551 Transcriptional regulator PadR-like family C2I28_00330 PF01569 PAP2 superfamily C2I28_00335 PF00512 His Kinase A (phospho-acceptor) domain C2I28_00335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_00335 PF18719 ArlS sensor domain C2I28_00340 PF00072 Response regulator receiver domain C2I28_00340 PF00486 Transcriptional regulatory protein, C terminal C2I28_00345 PF00486 Transcriptional regulatory protein, C terminal C2I28_00345 PF00072 Response regulator receiver domain C2I28_00360 PF03466 LysR substrate binding domain C2I28_00360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_00370 PF07690 Major Facilitator Superfamily C2I28_00385 PF00248 Aldo/keto reductase family C2I28_00390 PF02627 Carboxymuconolactone decarboxylase family C2I28_00395 PF00440 Bacterial regulatory proteins, tetR family C2I28_00400 PF12464 Maltose acetyltransferase C2I28_00400 PF14602 Hexapeptide repeat of succinyl-transferase C2I28_00410 PF01381 Helix-turn-helix C2I28_00450 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_00470 PF12867 DinB superfamily C2I28_00505 PF02659 Putative manganese efflux pump C2I28_00510 PF06803 Protein of unknown function (DUF1232) C2I28_00520 PF12833 Helix-turn-helix domain C2I28_00520 PF06445 GyrI-like small molecule binding domain C2I28_00555 PF00994 Probable molybdopterin binding domain C2I28_00555 PF03453 MoeA N-terminal region (domain I and II) C2I28_00555 PF03454 MoeA C-terminal region (domain IV) C2I28_00560 PF01967 MoaC family C2I28_00565 PF00994 Probable molybdopterin binding domain C2I28_00570 PF00174 Oxidoreductase molybdopterin binding domain C2I28_00575 PF02653 Branched-chain amino acid transport system / permease component C2I28_00580 PF02653 Branched-chain amino acid transport system / permease component C2I28_00585 PF00005 ABC transporter C2I28_00600 PF01943 Polysaccharide biosynthesis protein C2I28_00600 PF14667 Polysaccharide biosynthesis C-terminal domain C2I28_00605 PF14172 Domain of unknown function (DUF4309) C2I28_00620 PF04303 PrpF protein C2I28_00625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_00625 PF03466 LysR substrate binding domain C2I28_00630 PF03600 Citrate transporter C2I28_00650 PF01027 Inhibitor of apoptosis-promoting Bax1 C2I28_00655 PF00574 Clp protease C2I28_00670 PF00877 NlpC/P60 family C2I28_00675 PF07690 Major Facilitator Superfamily C2I28_00680 PF01047 MarR family C2I28_00695 PF08281 Sigma-70, region 4 C2I28_00695 PF04542 Sigma-70 region 2 C2I28_00705 PF00313 'Cold-shock' DNA-binding domain C2I28_00715 PF09680 Family of unknown function C2I28_00720 PF00324 Amino acid permease C2I28_00725 PF00324 Amino acid permease C2I28_00730 PF00171 Aldehyde dehydrogenase family C2I28_00735 PF01619 Proline dehydrogenase C2I28_00740 PF09234 Domain of unknown function (DUF1963) C2I28_00755 PF07454 Stage II sporulation protein P (SpoIIP) C2I28_00760 PF00563 EAL domain C2I28_00760 PF00990 Diguanylate cyclase, GGDEF domain C2I28_00760 PF03707 Bacterial signalling protein N terminal repeat C2I28_00765 PF01522 Polysaccharide deacetylase C2I28_00775 PF00535 Glycosyl transferase family 2 C2I28_00780 PF00210 Ferritin-like domain C2I28_00800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C2I28_00805 PF02074 Carboxypeptidase Taq (M32) metallopeptidase C2I28_00810 PF01048 Phosphorylase superfamily C2I28_00815 PF00248 Aldo/keto reductase family C2I28_00835 PF00583 Acetyltransferase (GNAT) family C2I28_00845 PF13411 MerR HTH family regulatory protein C2I28_00850 PF00248 Aldo/keto reductase family C2I28_00860 PF13411 MerR HTH family regulatory protein C2I28_00875 PF08244 Glycosyl hydrolases family 32 C terminal C2I28_00875 PF00251 Glycosyl hydrolases family 32 N-terminal domain C2I28_00880 PF12732 YtxH-like protein C2I28_00905 PF01734 Patatin-like phospholipase C2I28_00910 PF02687 FtsX-like permease family C2I28_00915 PF00005 ABC transporter C2I28_00925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_00930 PF00486 Transcriptional regulatory protein, C terminal C2I28_00930 PF00072 Response regulator receiver domain C2I28_00945 PF02583 Metal-sensitive transcriptional repressor C2I28_00950 PF14040 Deoxyribonuclease NucA/NucB C2I28_00955 PF11033 Competence protein J (ComJ) C2I28_00965 PF13538 UvrD-like helicase C-terminal domain C2I28_00970 PF00378 Enoyl-CoA hydratase/isomerase C2I28_00975 PF01638 HxlR-like helix-turn-helix C2I28_00980 PF00067 Cytochrome P450 C2I28_00985 PF07681 DoxX C2I28_00990 PF00535 Glycosyl transferase family 2 C2I28_00995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C2I28_00995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C2I28_00995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C2I28_01000 PF00535 Glycosyl transferase family 2 C2I28_01015 PF01476 LysM domain C2I28_01015 PF00877 NlpC/P60 family C2I28_01020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C2I28_01025 PF01047 MarR family C2I28_01030 PF11738 Protein of unknown function (DUF3298) C2I28_01030 PF13739 Deacetylase PdaC C2I28_01035 PF04542 Sigma-70 region 2 C2I28_01035 PF08281 Sigma-70, region 4 C2I28_01040 PF01522 Polysaccharide deacetylase C2I28_01040 PF13739 Deacetylase PdaC C2I28_01040 PF11738 Protein of unknown function (DUF3298) C2I28_01045 PF03845 Spore germination protein C2I28_01050 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_01055 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_01070 PF00324 Amino acid permease C2I28_01075 PF00491 Arginase family C2I28_01100 PF02386 Cation transport protein C2I28_01105 PF02080 TrkA-C domain C2I28_01105 PF02254 TrkA-N domain C2I28_01115 PF01037 Lrp/AsnC ligand binding domain C2I28_01125 PF13180 PDZ domain C2I28_01130 PF00486 Transcriptional regulatory protein, C terminal C2I28_01130 PF00072 Response regulator receiver domain C2I28_01135 PF00672 HAMP domain C2I28_01135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_01135 PF00512 His Kinase A (phospho-acceptor) domain C2I28_01140 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_01145 PF03061 Thioesterase superfamily C2I28_01150 PF07729 FCD domain C2I28_01150 PF00392 Bacterial regulatory proteins, gntR family C2I28_01155 PF13536 Putative multidrug resistance efflux transporter C2I28_01160 PF05076 Suppressor of fused protein (SUFU) C2I28_01165 PF01321 Creatinase/Prolidase N-terminal domain C2I28_01165 PF00557 Metallopeptidase family M24 C2I28_01175 PF03816 Cell envelope-related transcriptional attenuator domain C2I28_01185 PF02525 Flavodoxin-like fold C2I28_01190 PF09529 Integral membrane protein (intg_mem_TP0381) C2I28_01195 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_01200 PF00571 CBS domain C2I28_01200 PF00005 ABC transporter C2I28_01210 PF00355 Rieske [2Fe-2S] domain C2I28_01215 PF07690 Major Facilitator Superfamily C2I28_01220 PF00440 Bacterial regulatory proteins, tetR family C2I28_01225 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_01230 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_01235 PF01547 Bacterial extracellular solute-binding protein C2I28_01245 PF00356 Bacterial regulatory proteins, lacI family C2I28_01250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_01250 PF00512 His Kinase A (phospho-acceptor) domain C2I28_01255 PF01925 Sulfite exporter TauE/SafE C2I28_01260 PF00375 Sodium:dicarboxylate symporter family C2I28_01270 PF03060 Nitronate monooxygenase C2I28_01275 PF18011 C-terminal domain found in long catalases C2I28_01275 PF06628 Catalase-related immune-responsive C2I28_01275 PF00199 Catalase C2I28_01295 PF03816 Cell envelope-related transcriptional attenuator domain C2I28_01300 PF00884 Sulfatase C2I28_01310 PF00892 EamA-like transporter family C2I28_01315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C2I28_01330 PF00324 Amino acid permease C2I28_01335 PF05684 Protein of unknown function (DUF819) C2I28_01340 PF00440 Bacterial regulatory proteins, tetR family C2I28_01350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_01350 PF03466 LysR substrate binding domain C2I28_01355 PF01925 Sulfite exporter TauE/SafE C2I28_01360 PF00583 Acetyltransferase (GNAT) family C2I28_01365 PF13460 NAD(P)H-binding C2I28_01375 PF02308 MgtC family C2I28_01380 PF01209 ubiE/COQ5 methyltransferase family C2I28_01385 PF05908 Poly-gamma-glutamate hydrolase C2I28_01395 PF00155 Aminotransferase class I and II C2I28_01395 PF00392 Bacterial regulatory proteins, gntR family C2I28_01410 PF00324 Amino acid permease C2I28_01440 PF00535 Glycosyl transferase family 2 C2I28_01460 PF01593 Flavin containing amine oxidoreductase C2I28_01465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_01485 PF01810 LysE type translocator C2I28_01490 PF01235 Sodium:alanine symporter family C2I28_01500 PF01758 Sodium Bile acid symporter family C2I28_01505 PF00924 Mechanosensitive ion channel C2I28_01510 PF00188 Cysteine-rich secretory protein family C2I28_01515 PF03471 Transporter associated domain C2I28_01515 PF00571 CBS domain C2I28_01515 PF01595 Cyclin M transmembrane N-terminal domain C2I28_01525 PF02146 Sir2 family C2I28_01530 PF00582 Universal stress protein family C2I28_01535 PF00365 Phosphofructokinase C2I28_01540 PF00877 NlpC/P60 family C2I28_01540 PF01476 LysM domain C2I28_01550 PF01894 Uncharacterised protein family UPF0047 C2I28_01555 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_01560 PF03845 Spore germination protein C2I28_01565 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_01585 PF00005 ABC transporter C2I28_01600 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_01600 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_01615 PF03009 Glycerophosphoryl diester phosphodiesterase family C2I28_01625 PF08402 TOBE domain C2I28_01625 PF00005 ABC transporter C2I28_01640 PF02096 60Kd inner membrane protein C2I28_01650 PF02378 Phosphotransferase system, EIIC C2I28_01650 PF00367 phosphotransferase system, EIIB C2I28_01655 PF03123 CAT RNA binding domain C2I28_01655 PF00874 PRD domain C2I28_01660 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C2I28_01670 PF02525 Flavodoxin-like fold C2I28_01685 PF01098 Cell cycle protein C2I28_01690 PF01740 STAS domain C2I28_01690 PF00916 Sulfate permease family C2I28_01695 PF01048 Phosphorylase superfamily C2I28_01700 PF14191 YodL-like C2I28_01705 PF01569 PAP2 superfamily C2I28_01710 PF07070 SpoOM protein C2I28_01715 PF00069 Protein kinase domain C2I28_01720 PF10720 Protein of unknown function (DUF2515) C2I28_01725 PF14162 YozD-like protein C2I28_01735 PF06855 YozE SAM-like fold C2I28_01740 PF01757 Acyltransferase family C2I28_01745 PF01063 Amino-transferase class IV C2I28_01750 PF14122 YokU-like protein, putative antitoxin C2I28_01755 PF12544 Lysine-2,3-aminomutase C2I28_01760 PF00583 Acetyltransferase (GNAT) family C2I28_01765 PF07687 Peptidase dimerisation domain C2I28_01765 PF01546 Peptidase family M20/M25/M40 C2I28_01770 PF01144 Coenzyme A transferase C2I28_01775 PF01144 Coenzyme A transferase C2I28_01780 PF00202 Aminotransferase class-III C2I28_01785 PF00375 Sodium:dicarboxylate symporter family C2I28_01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_01795 PF00512 His Kinase A (phospho-acceptor) domain C2I28_01795 PF08447 PAS fold C2I28_01795 PF00989 PAS fold C2I28_01820 PF13472 GDSL-like Lipase/Acylhydrolase family C2I28_01825 PF02630 SCO1/SenC C2I28_01830 PF00512 His Kinase A (phospho-acceptor) domain C2I28_01830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_01835 PF02645 Uncharacterised protein, DegV family COG1307 C2I28_01840 PF10751 Protein of unknown function (DUF2535) C2I28_01845 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_01845 PF00585 C-terminal regulatory domain of Threonine dehydratase C2I28_01855 PF00186 Dihydrofolate reductase C2I28_01860 PF00303 Thymidylate synthase C2I28_01865 PF01842 ACT domain C2I28_01865 PF00551 Formyl transferase C2I28_01870 PF04183 IucA / IucC family C2I28_01870 PF06276 Ferric iron reductase FhuF-like transporter C2I28_01880 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) C2I28_01890 PF04183 IucA / IucC family C2I28_01890 PF06276 Ferric iron reductase FhuF-like transporter C2I28_01895 PF00282 Pyridoxal-dependent decarboxylase conserved domain C2I28_01900 PF00202 Aminotransferase class-III C2I28_01905 PF03932 CutC family C2I28_01915 PF00875 DNA photolyase C2I28_01915 PF03441 FAD binding domain of DNA photolyase C2I28_01920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_01920 PF00989 PAS fold C2I28_01920 PF00512 His Kinase A (phospho-acceptor) domain C2I28_01935 PF00171 Aldehyde dehydrogenase family C2I28_01940 PF00158 Sigma-54 interaction domain C2I28_01945 PF00202 Aminotransferase class-III C2I28_01950 PF11084 Protein of unknown function (DUF2621) C2I28_01955 PF07301 Protein of unknown function (DUF1453) C2I28_01960 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_01965 PF02683 Cytochrome C biogenesis protein transmembrane region C2I28_01970 PF09388 Spo0E like sporulation regulatory protein C2I28_01975 PF00005 ABC transporter C2I28_01975 PF00664 ABC transporter transmembrane region C2I28_01980 PF00664 ABC transporter transmembrane region C2I28_01980 PF00005 ABC transporter C2I28_01985 PF03672 Uncharacterised protein family (UPF0154) C2I28_01990 PF10747 Sporulation inhibitor of replication protein SirA C2I28_01995 PF00456 Transketolase, thiamine diphosphate binding domain C2I28_01995 PF02780 Transketolase, C-terminal domain C2I28_01995 PF02779 Transketolase, pyrimidine binding domain C2I28_02000 PF05979 Bacterial protein of unknown function (DUF896) C2I28_02005 PF00239 Resolvase, N terminal domain C2I28_02010 PF01476 LysM domain C2I28_02015 PF00717 Peptidase S24-like C2I28_02015 PF01726 LexA DNA binding domain C2I28_02040 PF00535 Glycosyl transferase family 2 C2I28_02045 PF16916 Dimerisation domain of Zinc Transporter C2I28_02045 PF01545 Cation efflux family C2I28_02050 PF13520 Amino acid permease C2I28_02055 PF05036 Sporulation related domain C2I28_02055 PF01520 N-acetylmuramoyl-L-alanine amidase C2I28_02060 PF00120 Glutamine synthetase, catalytic domain C2I28_02060 PF03951 Glutamine synthetase, beta-Grasp domain C2I28_02065 PF13411 MerR HTH family regulatory protein C2I28_02070 PF06838 Methionine gamma-lyase C2I28_02075 PF16360 GTP-binding GTPase Middle Region C2I28_02075 PF13167 GTP-binding GTPase N-terminal C2I28_02075 PF01926 50S ribosome-binding GTPase C2I28_02080 PF03458 UPF0126 domain C2I28_02085 PF17866 AAA lid domain C2I28_02085 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_02090 PF17209 Hfq protein C2I28_02100 PF08676 MutL C terminal dimerisation domain C2I28_02100 PF01119 DNA mismatch repair protein, C-terminal domain C2I28_02105 PF01624 MutS domain I C2I28_02105 PF00488 MutS domain V C2I28_02105 PF05190 MutS family domain IV C2I28_02105 PF05192 MutS domain III C2I28_02105 PF05188 MutS domain II C2I28_02110 PF13520 Amino acid permease C2I28_02115 PF10628 Outer spore coat protein E (CotE) C2I28_02120 PF06133 Control of competence regulator ComK, YlbF/YmcA C2I28_02125 PF00919 Uncharacterized protein family UPF0004 C2I28_02125 PF04055 Radical SAM superfamily C2I28_02125 PF01938 TRAM domain C2I28_02130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_02135 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg C2I28_02135 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase C2I28_02135 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II C2I28_02145 PF04232 Stage V sporulation protein S (SpoVS) C2I28_02150 PF13277 YmdB-like protein C2I28_02155 PF00013 KH domain C2I28_02155 PF12072 Domain of unknown function (DUF3552) C2I28_02155 PF01966 HD domain C2I28_02160 PF00154 recA bacterial DNA recombination protein C2I28_02165 PF00994 Probable molybdopterin binding domain C2I28_02165 PF18146 Damage-inducible protein CinA KH domain C2I28_02165 PF02464 Competence-damaged protein C2I28_02170 PF01066 CDP-alcohol phosphatidyltransferase C2I28_02175 PF13464 Domain of unknown function (DUF4115) C2I28_02180 PF11868 Protein of unknown function (DUF3388) C2I28_02185 PF11588 Protein of unknown function (DUF3243) C2I28_02195 PF00675 Insulinase (Peptidase family M16) C2I28_02195 PF05193 Peptidase M16 inactive domain C2I28_02200 PF05193 Peptidase M16 inactive domain C2I28_02205 PF02653 Branched-chain amino acid transport system / permease component C2I28_02210 PF02653 Branched-chain amino acid transport system / permease component C2I28_02215 PF00005 ABC transporter C2I28_02220 PF02608 ABC transporter substrate-binding protein PnrA-like C2I28_02225 PF07702 UTRA domain C2I28_02225 PF00392 Bacterial regulatory proteins, gntR family C2I28_02230 PF17854 FtsK alpha domain C2I28_02230 PF09397 Ftsk gamma domain C2I28_02230 PF01580 FtsK/SpoIIIE family C2I28_02235 PF14035 YlzJ-like protein C2I28_02240 PF00574 Clp protease C2I28_02245 PF17770 Ribonuclease J C-terminal domain C2I28_02245 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C2I28_02245 PF00753 Metallo-beta-lactamase superfamily C2I28_02250 PF00701 Dihydrodipicolinate synthetase family C2I28_02255 PF00696 Amino acid kinase family C2I28_02255 PF13840 ACT domain C2I28_02260 PF02774 Semialdehyde dehydrogenase, dimerisation domain C2I28_02260 PF01118 Semialdehyde dehydrogenase, NAD binding domain C2I28_02265 PF02441 Flavoprotein C2I28_02270 PF16924 Dipicolinate synthase subunit A N-terminal domain C2I28_02270 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C2I28_02275 PF05239 PRC-barrel domain C2I28_02280 PF00675 Insulinase (Peptidase family M16) C2I28_02280 PF05193 Peptidase M16 inactive domain C2I28_02285 PF01522 Polysaccharide deacetylase C2I28_02290 PF00013 KH domain C2I28_02290 PF00575 S1 RNA binding domain C2I28_02290 PF03725 3' exoribonuclease family, domain 2 C2I28_02290 PF01138 3' exoribonuclease family, domain 1 C2I28_02290 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C2I28_02295 PF00312 Ribosomal protein S15 C2I28_02300 PF06574 FAD synthetase C2I28_02300 PF01687 Riboflavin kinase C2I28_02305 PF16198 tRNA pseudouridylate synthase B C-terminal domain C2I28_02305 PF01509 TruB family pseudouridylate synthase (N terminal domain) C2I28_02310 PF02033 Ribosome-binding factor A C2I28_02315 PF04456 Protein of unknown function (DUF503) C2I28_02320 PF11987 Translation-initiation factor 2 C2I28_02320 PF04760 Translation initiation factor IF-2, N-terminal region C2I28_02320 PF00009 Elongation factor Tu GTP binding domain C2I28_02325 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family C2I28_02330 PF04296 Protein of unknown function (DUF448) C2I28_02335 PF13184 NusA-like KH domain C2I28_02335 PF08529 NusA N-terminal domain C2I28_02335 PF00575 S1 RNA binding domain C2I28_02340 PF17384 RimP C-terminal SH3 domain C2I28_02340 PF02576 RimP N-terminal domain C2I28_02345 PF14480 DNA polymerase III polC-type N-terminus I C2I28_02345 PF11490 DNA polymerase III polC-type N-terminus II C2I28_02345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C2I28_02345 PF00929 Exonuclease C2I28_02345 PF07733 Bacterial DNA polymerase III alpha NTPase domain C2I28_02345 PF14579 Helix-hairpin-helix motif C2I28_02345 PF02811 PHP domain C2I28_02350 PF04073 Aminoacyl-tRNA editing domain C2I28_02350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C2I28_02350 PF03129 Anticodon binding domain C2I28_02355 PF13180 PDZ domain C2I28_02355 PF02163 Peptidase family M50 C2I28_02360 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C2I28_02360 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C2I28_02360 PF13288 DXP reductoisomerase C-terminal domain C2I28_02370 PF01255 Putative undecaprenyl diphosphate synthase C2I28_02375 PF01765 Ribosome recycling factor C2I28_02380 PF00696 Amino acid kinase family C2I28_02385 PF00889 Elongation factor TS C2I28_02390 PF00318 Ribosomal protein S2 C2I28_02400 PF04542 Sigma-70 region 2 C2I28_02400 PF04539 Sigma-70 region 3 C2I28_02400 PF04545 Sigma-70, region 4 C2I28_02405 PF03975 CheD chemotactic sensory transduction C2I28_02410 PF01584 CheW-like domain C2I28_02415 PF01584 CheW-like domain C2I28_02415 PF02895 Signal transducing histidine kinase, homodimeric domain C2I28_02415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_02415 PF07194 P2 response regulator binding domain C2I28_02415 PF01627 Hpt domain C2I28_02420 PF01339 CheB methylesterase C2I28_02420 PF00072 Response regulator receiver domain C2I28_02425 PF10609 NUBPL iron-transfer P-loop NTPase C2I28_02430 PF00448 SRP54-type protein, GTPase domain C2I28_02435 PF00771 FHIPEP family C2I28_02440 PF01312 FlhB HrpN YscU SpaS Family C2I28_02445 PF01311 Bacterial export proteins, family 1 C2I28_02450 PF01313 Bacterial export proteins, family 3 C2I28_02455 PF00813 FliP family C2I28_02460 PF04347 Flagellar biosynthesis protein, FliO C2I28_02465 PF00072 Response regulator receiver domain C2I28_02470 PF04509 CheC-like family C2I28_02470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C2I28_02475 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C2I28_02475 PF02154 Flagellar motor switch protein FliM C2I28_02485 PF06289 Flagellar and Swarming motility proteins C2I28_02490 PF00460 Flagella basal body rod protein C2I28_02490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C2I28_02495 PF03963 Flagellar hook capping protein - N-terminal region C2I28_02510 PF02050 Flagellar FliJ protein C2I28_02515 PF18269 T3SS EscN ATPase C-terminal domain C2I28_02515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C2I28_02515 PF02874 ATP synthase alpha/beta family, beta-barrel domain C2I28_02520 PF02108 Flagellar assembly protein FliH C2I28_02525 PF01706 FliG C-terminal domain C2I28_02525 PF14842 FliG N-terminal domain C2I28_02525 PF14841 FliG middle domain C2I28_02530 PF08345 Flagellar M-ring protein C-terminal C2I28_02530 PF01514 Secretory protein of YscJ/FliF family C2I28_02535 PF02049 Flagellar hook-basal body complex protein FliE C2I28_02540 PF00460 Flagella basal body rod protein C2I28_02540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C2I28_02545 PF00460 Flagella basal body rod protein C2I28_02550 PF06018 CodY GAF-like domain C2I28_02550 PF08222 CodY helix-turn-helix domain C2I28_02555 PF07724 AAA domain (Cdc48 subfamily) C2I28_02555 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_02555 PF10431 C-terminal, D2-small domain, of ClpB protein C2I28_02560 PF00227 Proteasome subunit C2I28_02565 PF02899 Phage integrase, N-terminal SAM-like domain C2I28_02565 PF00589 Phage integrase family C2I28_02570 PF01134 Glucose inhibited division protein A C2I28_02575 PF01396 Topoisomerase DNA binding C4 zinc finger C2I28_02575 PF01751 Toprim domain C2I28_02575 PF01131 DNA topoisomerase C2I28_02580 PF02481 DNA recombination-mediator protein A C2I28_02585 PF02629 CoA binding domain C2I28_02585 PF00549 CoA-ligase C2I28_02590 PF00549 CoA-ligase C2I28_02590 PF08442 ATP-grasp domain C2I28_02595 PF01351 Ribonuclease HII C2I28_02600 PF01926 50S ribosome-binding GTPase C2I28_02605 PF10502 Signal peptidase, peptidase S26 C2I28_02610 PF01245 Ribosomal protein L19 C2I28_02615 PF01746 tRNA (Guanine-1)-methyltransferase C2I28_02620 PF05239 PRC-barrel domain C2I28_02620 PF01782 RimM N-terminal domain C2I28_02635 PF00886 Ribosomal protein S16 C2I28_02640 PF00448 SRP54-type protein, GTPase domain C2I28_02640 PF02881 SRP54-type protein, helical bundle domain C2I28_02640 PF02978 Signal peptide binding domain C2I28_02645 PF04297 Putative helix-turn-helix protein, YlxM / p13 like C2I28_02650 PF00448 SRP54-type protein, GTPase domain C2I28_02650 PF02881 SRP54-type protein, helical bundle domain C2I28_02655 PF06470 SMC proteins Flexible Hinge Domain C2I28_02655 PF02463 RecF/RecN/SMC N terminal domain C2I28_02660 PF14622 Ribonuclease-III-like C2I28_02660 PF00035 Double-stranded RNA binding motif C2I28_02665 PF00550 Phosphopantetheine attachment site C2I28_02675 PF00698 Acyl transferase domain C2I28_02680 PF02504 Fatty acid synthesis protein C2I28_02685 PF08279 HTH domain C2I28_02685 PF01575 MaoC like domain C2I28_02690 PF00270 DEAD/DEAH box helicase C2I28_02690 PF00271 Helicase conserved C-terminal domain C2I28_02690 PF17191 RecG wedge domain C2I28_02695 PF03313 Serine dehydratase alpha chain C2I28_02700 PF01842 ACT domain C2I28_02700 PF03315 Serine dehydratase beta chain C2I28_02710 PF02734 DAK2 domain C2I28_02710 PF13684 Dihydroxyacetone kinase family C2I28_02715 PF03780 Asp23 family, cell envelope-related function C2I28_02720 PF00830 Ribosomal L28 family C2I28_02725 PF08183 Stage V sporulation protein family C2I28_02730 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain C2I28_02730 PF04263 Thiamin pyrophosphokinase, catalytic domain C2I28_02735 PF00834 Ribulose-phosphate 3 epimerase family C2I28_02740 PF03193 RsgA GTPase C2I28_02740 PF16745 RsgA N-terminal domain C2I28_02745 PF03793 PASTA domain C2I28_02745 PF00069 Protein kinase domain C2I28_02755 PF04055 Radical SAM superfamily C2I28_02760 PF01189 16S rRNA methyltransferase RsmB/F C2I28_02760 PF01029 NusB family C2I28_02765 PF00551 Formyl transferase C2I28_02765 PF02911 Formyl transferase, C-terminal domain C2I28_02770 PF01327 Polypeptide deformylase C2I28_02775 PF00271 Helicase conserved C-terminal domain C2I28_02775 PF17764 3′ DNA-binding domain (3′BD) C2I28_02775 PF18074 Primosomal protein N C-terminal domain C2I28_02775 PF04851 Type III restriction enzyme, res subunit C2I28_02775 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C2I28_02780 PF02441 Flavoprotein C2I28_02780 PF04127 DNA / pantothenate metabolism flavoprotein C2I28_02785 PF01192 RNA polymerase Rpb6 C2I28_02790 PF00625 Guanylate kinase C2I28_02795 PF04025 Domain of unknown function (DUF370) C2I28_02800 PF08340 Domain of unknown function (DUF1732) C2I28_02800 PF03755 YicC-like family, N-terminal region C2I28_02805 PF00690 Cation transporter/ATPase, N-terminus C2I28_02805 PF00689 Cation transporting ATPase, C-terminus C2I28_02810 PF05670 NFACT protein RNA binding domain C2I28_02815 PF00156 Phosphoribosyl transferase domain C2I28_02820 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C2I28_02825 PF01180 Dihydroorotate dehydrogenase C2I28_02830 PF00175 Oxidoreductase NAD-binding domain C2I28_02830 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B C2I28_02835 PF02142 MGS-like domain C2I28_02835 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C2I28_02835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C2I28_02840 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C2I28_02840 PF00117 Glutamine amidotransferase class-I C2I28_02845 PF01979 Amidohydrolase family C2I28_02850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C2I28_02850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C2I28_02855 PF00860 Permease family C2I28_02860 PF00156 Phosphoribosyl transferase domain C2I28_02865 PF00849 RNA pseudouridylate synthase C2I28_02865 PF01479 S4 domain C2I28_02870 PF01252 Signal peptidase (SPase) II C2I28_02880 PF06827 Zinc finger found in FPG and IleRS C2I28_02880 PF00133 tRNA synthetases class I (I, L, M and V) C2I28_02880 PF08264 Anticodon-binding domain of tRNA C2I28_02885 PF05103 DivIVA protein C2I28_02890 PF01479 S4 domain C2I28_02890 PF17774 Putative RNA-binding domain in YlmH C2I28_02895 PF02325 YGGT family C2I28_02900 PF04472 Cell division protein SepF C2I28_02905 PF01168 Alanine racemase, N-terminal domain C2I28_02910 PF02578 Multi-copper polyphenol oxidoreductase laccase C2I28_02915 PF05239 PRC-barrel domain C2I28_02920 PF04539 Sigma-70 region 3 C2I28_02920 PF04545 Sigma-70, region 4 C2I28_02920 PF04542 Sigma-70 region 2 C2I28_02925 PF04542 Sigma-70 region 2 C2I28_02925 PF04545 Sigma-70, region 4 C2I28_02930 PF03419 Sporulation factor SpoIIGA C2I28_02935 PF12327 FtsZ family, C-terminal domain C2I28_02935 PF00091 Tubulin/FtsZ family, GTPase domain C2I28_02940 PF02491 SHS2 domain inserted in FTSA C2I28_02945 PF08478 POTRA domain, FtsQ-type C2I28_02950 PF01565 FAD binding domain C2I28_02950 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C2I28_02955 PF01098 Cell cycle protein C2I28_02960 PF08245 Mur ligase middle domain C2I28_02960 PF02875 Mur ligase family, glutamate ligase domain C2I28_02965 PF00953 Glycosyl transferase family 4 C2I28_02970 PF08245 Mur ligase middle domain C2I28_02970 PF01225 Mur ligase family, catalytic domain C2I28_02970 PF02875 Mur ligase family, glutamate ligase domain C2I28_02975 PF03717 Penicillin-binding Protein dimerisation domain C2I28_02975 PF03793 PASTA domain C2I28_02975 PF00905 Penicillin binding protein transpeptidase domain C2I28_02980 PF03717 Penicillin-binding Protein dimerisation domain C2I28_02980 PF00905 Penicillin binding protein transpeptidase domain C2I28_02980 PF03793 PASTA domain C2I28_02985 PF04977 Septum formation initiator C2I28_02990 PF01795 MraW methylase family C2I28_02995 PF10079 Bacillithiol biosynthesis BshC C2I28_03005 PF02558 Ketopantoate reductase PanE/ApbA C2I28_03005 PF08546 Ketopantoate reductase PanE/ApbA C terminal C2I28_03010 PF01039 Carboxyl transferase domain C2I28_03015 PF00364 Biotin-requiring enzyme C2I28_03020 PF02785 Biotin carboxylase C-terminal domain C2I28_03020 PF00289 Biotin carboxylase, N-terminal domain C2I28_03020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C2I28_03025 PF13508 Acetyltransferase (GNAT) domain C2I28_03035 PF00378 Enoyl-CoA hydratase/isomerase C2I28_03040 PF01783 Ribosomal L32p protein family C2I28_03045 PF02620 Large ribosomal RNA subunit accumulation protein YceD C2I28_03050 PF05636 HIGH Nucleotidyl Transferase C2I28_03055 PF05362 Lon protease (S16) C-terminal proteolytic domain C2I28_03055 PF13180 PDZ domain C2I28_03060 PF01734 Patatin-like phospholipase C2I28_03065 PF07670 Nucleoside recognition C2I28_03070 PF01467 Cytidylyltransferase-like C2I28_03085 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) C2I28_03095 PF06133 Control of competence regulator ComK, YlbF/YmcA C2I28_03105 PF14003 YlbE-like protein C2I28_03110 PF14071 Putative coat protein C2I28_03115 PF07187 Protein of unknown function (DUF1405) C2I28_03120 PF00032 Cytochrome b(C-terminal)/b6/petD C2I28_03120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C2I28_03125 PF00033 Cytochrome b/b6/petB C2I28_03130 PF00355 Rieske [2Fe-2S] domain C2I28_03140 PF08864 UPF0302 domain C2I28_03140 PF08858 IDEAL domain C2I28_03155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C2I28_03160 PF02153 Prephenate dehydrogenase C2I28_03160 PF01842 ACT domain C2I28_03165 PF00155 Aminotransferase class I and II C2I28_03170 PF00290 Tryptophan synthase alpha chain C2I28_03175 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_03180 PF00218 Indole-3-glycerol phosphate synthase C2I28_03185 PF02885 Glycosyl transferase family, helical bundle domain C2I28_03185 PF00591 Glycosyl transferase family, a/b domain C2I28_03190 PF00425 chorismate binding enzyme C2I28_03190 PF04715 Anthranilate synthase component I, N terminal region C2I28_03195 PF01761 3-dehydroquinate synthase C2I28_03200 PF01264 Chorismate synthase C2I28_03205 PF03705 CheR methyltransferase, all-alpha domain C2I28_03205 PF01739 CheR methyltransferase, SAM binding domain C2I28_03210 PF00334 Nucleoside diphosphate kinase C2I28_03215 PF00348 Polyprenyl synthetase C2I28_03220 PF01209 ubiE/COQ5 methyltransferase family C2I28_03225 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 C2I28_03230 PF02081 Tryptophan RNA-binding attenuator protein C2I28_03235 PF01227 GTP cyclohydrolase I C2I28_03240 PF00216 Bacterial DNA-binding protein C2I28_03245 PF09547 Stage IV sporulation protein A (spore_IV_A) C2I28_03255 PF10966 Protein of unknown function (DUF2768) C2I28_03260 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C2I28_03260 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C2I28_03265 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C2I28_03265 PF01926 50S ribosome-binding GTPase C2I28_03275 PF14140 YpzI-like protein C2I28_03280 PF07690 Major Facilitator Superfamily C2I28_03285 PF01070 FMN-dependent dehydrogenase C2I28_03290 PF00575 S1 RNA binding domain C2I28_03295 PF01553 Acyltransferase C2I28_03300 PF02224 Cytidylate kinase C2I28_03310 PF03413 Peptidase propeptide and YPEB domain C2I28_03310 PF14620 YpeB sporulation C2I28_03315 PF01471 Putative peptidoglycan binding domain C2I28_03315 PF07486 Cell Wall Hydrolase C2I28_03320 PF13367 PrsW family intramembrane metalloprotease C2I28_03325 PF00710 Asparaginase, N-terminal C2I28_03325 PF17763 Glutaminase/Asparaginase C-terminal domain C2I28_03335 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C2I28_03335 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C2I28_03340 PF05389 Negative regulator of genetic competence (MecA) C2I28_03345 PF13411 MerR HTH family regulatory protein C2I28_03350 PF00149 Calcineurin-like phosphoesterase C2I28_03365 PF02517 CPBP intramembrane metalloprotease C2I28_03370 PF00271 Helicase conserved C-terminal domain C2I28_03370 PF00270 DEAD/DEAH box helicase C2I28_03385 PF12822 ECF transporter, substrate-specific component C2I28_03390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C2I28_03390 PF01842 ACT domain C2I28_03390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C2I28_03395 PF01551 Peptidase family M23 C2I28_03400 PF18698 Histidine kinase sensor domain C2I28_03400 PF00512 His Kinase A (phospho-acceptor) domain C2I28_03400 PF00672 HAMP domain C2I28_03400 PF00989 PAS fold C2I28_03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_03405 PF00072 Response regulator receiver domain C2I28_03405 PF00486 Transcriptional regulatory protein, C terminal C2I28_03410 PF01578 Cytochrome C assembly protein C2I28_03415 PF05140 ResB-like family C2I28_03420 PF00578 AhpC/TSA family C2I28_03425 PF00849 RNA pseudouridylate synthase C2I28_03425 PF01479 S4 domain C2I28_03430 PF07670 Nucleoside recognition C2I28_03435 PF07670 Nucleoside recognition C2I28_03440 PF00768 D-alanyl-D-alanine carboxypeptidase C2I28_03440 PF07943 Penicillin-binding protein 5, C-terminal domain C2I28_03445 PF04079 Segregation and condensation complex subunit ScpB C2I28_03450 PF02616 Segregation and condensation protein ScpA C2I28_03460 PF03745 Domain of unknown function (DUF309) C2I28_03465 PF00583 Acetyltransferase (GNAT) family C2I28_03470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C2I28_03475 PF06207 Protein of unknown function (DUF1002) C2I28_03480 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C2I28_03480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C2I28_03485 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_03490 PF14097 Stage V sporulation protein AE1 C2I28_03495 PF03862 SpoVAC/SpoVAEB sporulation membrane protein C2I28_03500 PF07451 Stage V sporulation protein AD (SpoVAD) C2I28_03505 PF03862 SpoVAC/SpoVAEB sporulation membrane protein C2I28_03510 PF13782 Stage V sporulation protein AB C2I28_03515 PF12164 Stage V sporulation protein AA C2I28_03520 PF04539 Sigma-70 region 3 C2I28_03520 PF04542 Sigma-70 region 2 C2I28_03520 PF04545 Sigma-70, region 4 C2I28_03525 PF13581 Histidine kinase-like ATPase domain C2I28_03530 PF01740 STAS domain C2I28_03535 PF07943 Penicillin-binding protein 5, C-terminal domain C2I28_03535 PF00768 D-alanyl-D-alanine carboxypeptidase C2I28_03540 PF01048 Phosphorylase superfamily C2I28_03545 PF01676 Metalloenzyme superfamily C2I28_03550 PF00589 Phage integrase family C2I28_03550 PF02899 Phage integrase, N-terminal SAM-like domain C2I28_03555 PF14004 Protein of unknown function (DUF4227) C2I28_03560 PF01475 Ferric uptake regulator family C2I28_03565 PF01944 Stage II sporulation protein M C2I28_03570 PF00293 NUDIX domain C2I28_03575 PF13072 Mother cell inhibitor of FtsZ C2I28_03580 PF00248 Aldo/keto reductase family C2I28_03590 PF01144 Coenzyme A transferase C2I28_03595 PF01144 Coenzyme A transferase C2I28_03600 PF00108 Thiolase, N-terminal domain C2I28_03600 PF02803 Thiolase, C-terminal domain C2I28_03605 PF00682 HMGL-like C2I28_03610 PF12146 Serine aminopeptidase, S33 C2I28_03625 PF00106 short chain dehydrogenase C2I28_03630 PF00753 Metallo-beta-lactamase superfamily C2I28_03635 PF03807 NADP oxidoreductase coenzyme F420-dependent C2I28_03635 PF14748 Pyrroline-5-carboxylate reductase dimerisation C2I28_03640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C2I28_03645 PF12706 Beta-lactamase superfamily domain C2I28_03645 PF00753 Metallo-beta-lactamase superfamily C2I28_03650 PF00202 Aminotransferase class-III C2I28_03655 PF00171 Aldehyde dehydrogenase family C2I28_03660 PF07905 Purine catabolism regulatory protein-like family C2I28_03660 PF13556 PucR C-terminal helix-turn-helix domain C2I28_03660 PF17853 GGDEF-like domain C2I28_03675 PF01979 Amidohydrolase family C2I28_03680 PF01180 Dihydroorotate dehydrogenase C2I28_03685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C2I28_03685 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_03690 PF01546 Peptidase family M20/M25/M40 C2I28_03690 PF07687 Peptidase dimerisation domain C2I28_03695 PF01039 Carboxyl transferase domain C2I28_03705 PF03734 L,D-transpeptidase catalytic domain C2I28_03710 PF06081 Aromatic acid exporter family member 1 C2I28_03710 PF11728 Putative aromatic acid exporter C-terminal domain C2I28_03715 PF00005 ABC transporter C2I28_03720 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_03725 PF00497 Bacterial extracellular solute-binding proteins, family 3 C2I28_03730 PF06491 Disulphide isomerase C2I28_03740 PF02310 B12 binding domain C2I28_03740 PF01642 Methylmalonyl-CoA mutase C2I28_03745 PF01642 Methylmalonyl-CoA mutase C2I28_03745 PF02310 B12 binding domain C2I28_03750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C2I28_03750 PF02817 e3 binding domain C2I28_03750 PF00364 Biotin-requiring enzyme C2I28_03755 PF02780 Transketolase, C-terminal domain C2I28_03755 PF02779 Transketolase, pyrimidine binding domain C2I28_03760 PF00676 Dehydrogenase E1 component C2I28_03765 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_03765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C2I28_03770 PF00871 Acetokinase family C2I28_03775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C2I28_03775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C2I28_03780 PF01515 Phosphate acetyl/butaryl transferase C2I28_03785 PF02954 Bacterial regulatory protein, Fis family C2I28_03785 PF00989 PAS fold C2I28_03785 PF00158 Sigma-54 interaction domain C2I28_03790 PF11118 Protein of unknown function (DUF2627) C2I28_03795 PF03009 Glycerophosphoryl diester phosphodiesterase family C2I28_03800 PF14174 YycC-like protein C2I28_03805 PF00854 POT family C2I28_03810 PF00072 Response regulator receiver domain C2I28_03810 PF08769 Sporulation initiation factor Spo0A C terminal C2I28_03815 PF05580 SpoIVB peptidase S55 C2I28_03815 PF17820 PDZ domain C2I28_03820 PF13476 AAA domain C2I28_03825 PF01316 Arginine repressor, DNA binding domain C2I28_03825 PF02863 Arginine repressor, C-terminal domain C2I28_03830 PF01479 S4 domain C2I28_03830 PF01728 FtsJ-like methyltransferase C2I28_03835 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C2I28_03835 PF02779 Transketolase, pyrimidine binding domain C2I28_03835 PF02780 Transketolase, C-terminal domain C2I28_03840 PF00348 Polyprenyl synthetase C2I28_03845 PF02609 Exonuclease VII small subunit C2I28_03850 PF13742 OB-fold nucleic acid binding domain C2I28_03850 PF02601 Exonuclease VII, large subunit C2I28_03855 PF01029 NusB family C2I28_03860 PF03780 Asp23 family, cell envelope-related function C2I28_03865 PF00289 Biotin carboxylase, N-terminal domain C2I28_03865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C2I28_03865 PF02785 Biotin carboxylase C-terminal domain C2I28_03870 PF00364 Biotin-requiring enzyme C2I28_03875 PF12685 SpoIIIAH-like protein C2I28_03885 PF09581 Stage III sporulation protein AF (Spore_III_AF) C2I28_03890 PF09546 Stage III sporulation protein AE (spore_III_AE) C2I28_03895 PF06686 Stage III sporulation protein AC/AD protein family C2I28_03900 PF06686 Stage III sporulation protein AC/AD protein family C2I28_03905 PF09548 Stage III sporulation protein AB (spore_III_AB) C2I28_03915 PF10942 Protein of unknown function (DUF2619) C2I28_03920 PF09285 Elongation factor P, C-terminal C2I28_03920 PF08207 Elongation factor P (EF-P) KOW-like domain C2I28_03920 PF01132 Elongation factor P (EF-P) OB domain C2I28_03925 PF00557 Metallopeptidase family M24 C2I28_03925 PF01321 Creatinase/Prolidase N-terminal domain C2I28_03930 PF01220 Dehydroquinase class II C2I28_03935 PF11085 Conserved membrane protein YqhR C2I28_03940 PF07136 Protein of unknown function (DUF1385) C2I28_03950 PF01734 Patatin-like phospholipase C2I28_03955 PF01325 Iron dependent repressor, N-terminal DNA binding domain C2I28_03955 PF02742 Iron dependent repressor, metal binding and dimerisation domain C2I28_03960 PF00317 Ribonucleotide reductase, all-alpha domain C2I28_03960 PF02867 Ribonucleotide reductase, barrel domain C2I28_03960 PF03477 ATP cone domain C2I28_03965 PF03099 Biotin/lipoate A/B protein ligase family C2I28_03970 PF00581 Rhodanese-like domain C2I28_03975 PF02347 Glycine cleavage system P-protein C2I28_03980 PF02347 Glycine cleavage system P-protein C2I28_03985 PF08669 Glycine cleavage T-protein C-terminal barrel domain C2I28_03985 PF01571 Aminomethyltransferase folate-binding domain C2I28_03990 PF00271 Helicase conserved C-terminal domain C2I28_03990 PF00176 SNF2 family N-terminal domain C2I28_03995 PF11079 Bacterial protein YqhG of unknown function C2I28_04000 PF14038 YqzE-like protein C2I28_04020 PF07963 Prokaryotic N-terminal methylation motif C2I28_04030 PF00482 Type II secretion system (T2SS), protein F C2I28_04035 PF00437 Type II/IV secretion system protein C2I28_04040 PF03960 ArsC family C2I28_04045 PF11117 Protein of unknown function (DUF2626) C2I28_04050 PF00753 Metallo-beta-lactamase superfamily C2I28_04060 PF00246 Zinc carboxypeptidase C2I28_04065 PF00480 ROK family C2I28_04070 PF06014 Bacterial protein of unknown function (DUF910) C2I28_04075 PF01694 Rhomboid family C2I28_04085 PF01812 5-formyltetrahydrofolate cyclo-ligase family C2I28_04090 PF00471 Ribosomal protein L33 C2I28_04095 PF00483 Nucleotidyl transferase C2I28_04100 PF13439 Glycosyltransferase Family 4 C2I28_04100 PF00534 Glycosyl transferases group 1 C2I28_04110 PF01895 PhoU domain C2I28_04115 PF00005 ABC transporter C2I28_04120 PF00905 Penicillin binding protein transpeptidase domain C2I28_04120 PF03717 Penicillin-binding Protein dimerisation domain C2I28_04125 PF07690 Major Facilitator Superfamily C2I28_04130 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C2I28_04130 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C2I28_04160 PF04306 Protein of unknown function (DUF456) C2I28_04165 PF02690 Na+/Pi-cotransporter C2I28_04175 PF07690 Major Facilitator Superfamily C2I28_04185 PF04551 GcpE protein C2I28_04200 PF01475 Ferric uptake regulator family C2I28_04205 PF00950 ABC 3 transport family C2I28_04210 PF00005 ABC transporter C2I28_04220 PF01261 Xylose isomerase-like TIM barrel C2I28_04225 PF00271 Helicase conserved C-terminal domain C2I28_04225 PF00270 DEAD/DEAH box helicase C2I28_04235 PF02401 LytB protein C2I28_04240 PF01784 NIF3 (NGG1p interacting factor 3) C2I28_04245 PF04816 tRNA (adenine(22)-N(1))-methyltransferase C2I28_04250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C2I28_04255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_04255 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_04255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_04260 PF03979 Sigma-70 factor, region 1.1 C2I28_04260 PF00140 Sigma-70 factor, region 1.2 C2I28_04260 PF04542 Sigma-70 region 2 C2I28_04260 PF04539 Sigma-70 region 3 C2I28_04260 PF04545 Sigma-70, region 4 C2I28_04265 PF01807 CHC2 zinc finger C2I28_04265 PF10410 DnaB-helicase binding domain of primase C2I28_04265 PF08275 DNA primase catalytic core, N-terminal domain C2I28_04270 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 C2I28_04275 PF03618 Kinase/pyrophosphorylase C2I28_04280 PF00571 CBS domain C2I28_04280 PF08279 HTH domain C2I28_04285 PF02565 Recombination protein O C terminal C2I28_04285 PF11967 Recombination protein O N terminal C2I28_04290 PF14006 YqzL-like protein C2I28_04295 PF01926 50S ribosome-binding GTPase C2I28_04295 PF07650 KH domain C2I28_04300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C2I28_04305 PF01219 Prokaryotic diacylglycerol kinase C2I28_04310 PF02130 Uncharacterized protein family UPF0054 C2I28_04315 PF01966 HD domain C2I28_04315 PF07697 7TM-HD extracellular C2I28_04315 PF07698 7TM receptor with intracellular HD hydrolase C2I28_04320 PF02562 PhoH-like protein C2I28_04325 PF06898 Putative stage IV sporulation protein YqfD C2I28_04330 PF07873 YabP family C2I28_04340 PF12127 SigmaW regulon antibacterial C2I28_04345 PF01957 NfeD-like C-terminal, partner-binding C2I28_04345 PF01972 Serine dehydrogenase proteinase C2I28_04350 PF09424 Yqey-like protein C2I28_04355 PF01165 Ribosomal protein S21 C2I28_04360 PF04055 Radical SAM superfamily C2I28_04360 PF01938 TRAM domain C2I28_04360 PF00919 Uncharacterized protein family UPF0004 C2I28_04365 PF04452 RNA methyltransferase C2I28_04375 PF01556 DnaJ C terminal domain C2I28_04375 PF00684 DnaJ central domain C2I28_04375 PF00226 DnaJ domain C2I28_04380 PF00012 Hsp70 protein C2I28_04385 PF01025 GrpE C2I28_04390 PF01628 HrcA protein C terminal domain C2I28_04395 PF04055 Radical SAM superfamily C2I28_04395 PF06969 HemN C-terminal domain C2I28_04400 PF00009 Elongation factor Tu GTP binding domain C2I28_04400 PF03144 Elongation factor Tu domain 2 C2I28_04400 PF00679 Elongation factor G C-terminus C2I28_04400 PF06421 GTP-binding protein LepA C-terminus C2I28_04410 PF03418 Germination protease C2I28_04415 PF01649 Ribosomal protein S20 C2I28_04420 PF06144 DNA polymerase III, delta subunit C2I28_04425 PF14141 YqzM-like protein C2I28_04430 PF00753 Metallo-beta-lactamase superfamily C2I28_04430 PF13567 Domain of unknown function (DUF4131) C2I28_04430 PF03772 Competence protein C2I28_04435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C2I28_04440 PF10531 SLBB domain C2I28_04445 PF14748 Pyrroline-5-carboxylate reductase dimerisation C2I28_04445 PF03807 NADP oxidoreductase coenzyme F420-dependent C2I28_04450 PF13649 Methyltransferase domain C2I28_04460 PF01966 HD domain C2I28_04465 PF01467 Cytidylyltransferase-like C2I28_04470 PF01985 CRS1 / YhbY (CRM) domain C2I28_04475 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C2I28_04475 PF08501 Shikimate dehydrogenase substrate binding domain C2I28_04475 PF01488 Shikimate / quinate 5-dehydrogenase C2I28_04480 PF01926 50S ribosome-binding GTPase C2I28_04490 PF08970 Sporulation inhibitor A C2I28_04495 PF02666 Phosphatidylserine decarboxylase C2I28_04500 PF01066 CDP-alcohol phosphatidyltransferase C2I28_04505 PF04545 Sigma-70, region 4 C2I28_04505 PF04542 Sigma-70 region 2 C2I28_04510 PF09501 Probable sporulation protein (Bac_small_yrzI) C2I28_04520 PF01053 Cys/Met metabolism PLP-dependent enzyme C2I28_04525 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_04530 PF01048 Phosphorylase superfamily C2I28_04535 PF13649 Methyltransferase domain C2I28_04540 PF10750 Protein of unknown function (DUF2536) C2I28_04550 PF03717 Penicillin-binding Protein dimerisation domain C2I28_04550 PF00905 Penicillin binding protein transpeptidase domain C2I28_04555 PF00857 Isochorismatase family C2I28_04560 PF03449 Transcription elongation factor, N-terminal C2I28_04560 PF01272 Transcription elongation factor, GreA/GreB, C-term C2I28_04565 PF00485 Phosphoribulokinase / Uridine kinase family C2I28_04570 PF01136 Peptidase family U32 C2I28_04570 PF16325 Peptidase family U32 C-terminal domain C2I28_04575 PF01136 Peptidase family U32 C2I28_04580 PF01596 O-methyltransferase C2I28_04585 PF02618 YceG-like family C2I28_04590 PF06949 Protein of unknown function (DUF1292) C2I28_04595 PF03652 Holliday junction resolvase C2I28_04600 PF06135 IreB regulatory phosphoprotein C2I28_04605 PF02272 DHHA1 domain C2I28_04605 PF01411 tRNA synthetases class II (A) C2I28_04605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C2I28_04610 PF01594 AI-2E family transporter C2I28_04625 PF14490 Helix-hairpin-helix containing domain C2I28_04625 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain C2I28_04625 PF13538 UvrD-like helicase C-terminal domain C2I28_04640 PF00266 Aminotransferase class-V C2I28_04645 PF02082 Transcriptional regulator C2I28_04650 PF16193 AAA C-terminal domain C2I28_04650 PF12002 MgsA AAA+ ATPase C terminal C2I28_04650 PF05496 Holliday junction DNA helicase RuvB P-loop domain C2I28_04655 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_04660 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_04665 PF12849 PBP superfamily domain C2I28_04670 PF00899 ThiF family C2I28_04680 PF01336 OB-fold nucleic acid binding domain C2I28_04680 PF02938 GAD domain C2I28_04680 PF00152 tRNA synthetases class II (D, K and N) C2I28_04685 PF13393 Histidyl-tRNA synthetase C2I28_04685 PF03129 Anticodon binding domain C2I28_04695 PF01520 N-acetylmuramoyl-L-alanine amidase C2I28_04695 PF08239 Bacterial SH3 domain C2I28_04700 PF02580 D-Tyr-tRNA(Tyr) deacylase C2I28_04705 PF04607 Region found in RelA / SpoT proteins C2I28_04705 PF13291 ACT domain C2I28_04705 PF02824 TGS domain C2I28_04710 PF00156 Phosphoribosyl transferase domain C2I28_04715 PF01368 DHH family C2I28_04715 PF02272 DHHA1 domain C2I28_04715 PF10141 Single-strand DNA-specific exonuclease, C terminal domain C2I28_04715 PF17768 RecJ OB domain C2I28_04720 PF02355 Protein export membrane protein C2I28_04720 PF07549 SecD/SecF GG Motif C2I28_04725 PF13797 Post-transcriptional regulator C2I28_04730 PF01943 Polysaccharide biosynthesis protein C2I28_04730 PF14667 Polysaccharide biosynthesis C-terminal domain C2I28_04735 PF04239 Protein of unknown function (DUF421) C2I28_04740 PF12670 Protein of unknown function (DUF3792) C2I28_04745 PF02699 Preprotein translocase subunit C2I28_04750 PF01702 Queuine tRNA-ribosyltransferase C2I28_04755 PF02547 Queuosine biosynthesis protein C2I28_04760 PF11146 Protein of unknown function (DUF2905) C2I28_04765 PF05496 Holliday junction DNA helicase RuvB P-loop domain C2I28_04765 PF05491 RuvB C-terminal winged helix domain C2I28_04765 PF17864 RuvB AAA lid domain C2I28_04770 PF07499 RuvA, C-terminal domain C2I28_04770 PF01330 RuvA N terminal domain C2I28_04775 PF08955 BofC C-terminal domain C2I28_04775 PF08977 Bypass of Forespore C, N terminal C2I28_04795 PF01476 LysM domain C2I28_04800 PF02445 Quinolinate synthetase A protein C2I28_04805 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C2I28_04805 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C2I28_04810 PF02910 Fumarate reductase flavoprotein C-term C2I28_04810 PF00890 FAD binding domain C2I28_04815 PF00266 Aminotransferase class-V C2I28_04820 PF02829 3H domain C2I28_04820 PF08279 HTH domain C2I28_04825 PF01842 ACT domain C2I28_04825 PF00800 Prephenate dehydratase C2I28_04830 PF01842 ACT domain C2I28_04835 PF09269 Domain of unknown function (DUF1967) C2I28_04835 PF01926 50S ribosome-binding GTPase C2I28_04835 PF01018 GTP1/OBG C2I28_04840 PF14682 Sporulation initiation phospho-transferase B, C-terminal C2I28_04840 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C2I28_04845 PF01016 Ribosomal L27 protein C2I28_04850 PF04327 Cysteine protease Prp C2I28_04855 PF00829 Ribosomal prokaryotic L21 protein C2I28_04860 PF00575 S1 RNA binding domain C2I28_04860 PF10150 Ribonuclease E/G family C2I28_04865 PF02163 Peptidase family M50 C2I28_04870 PF01551 Peptidase family M23 C2I28_04875 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C2I28_04880 PF03775 Septum formation inhibitor MinC, C-terminal domain C2I28_04885 PF04093 rod shape-determining protein MreD C2I28_04890 PF04085 rod shape-determining protein MreC C2I28_04900 PF04002 RadC-like JAB domain C2I28_04905 PF02545 Maf-like protein C2I28_04915 PF01478 Type IV leader peptidase family C2I28_04915 PF06750 Bacterial Peptidase A24 N-terminal domain C2I28_04925 PF04238 Protein of unknown function (DUF420) C2I28_04930 PF08245 Mur ligase middle domain C2I28_04930 PF02875 Mur ligase family, glutamate ligase domain C2I28_04935 PF00133 tRNA synthetases class I (I, L, M and V) C2I28_04935 PF10458 Valyl tRNA synthetase tRNA binding arm C2I28_04935 PF08264 Anticodon-binding domain of tRNA C2I28_04950 PF01476 LysM domain C2I28_04955 PF00202 Aminotransferase class-III C2I28_04960 PF00490 Delta-aminolevulinic acid dehydratase C2I28_04965 PF02602 Uroporphyrinogen-III synthase HemD C2I28_04970 PF03900 Porphobilinogen deaminase, C-terminal domain C2I28_04970 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C2I28_04975 PF01578 Cytochrome C assembly protein C2I28_04980 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C2I28_04980 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C2I28_04980 PF01488 Shikimate / quinate 5-dehydrogenase C2I28_04990 PF01926 50S ribosome-binding GTPase C2I28_04995 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_04995 PF05362 Lon protease (S16) C-terminal proteolytic domain C2I28_04995 PF02190 ATP-dependent protease La (LON) substrate-binding domain C2I28_05000 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_05000 PF05362 Lon protease (S16) C-terminal proteolytic domain C2I28_05005 PF06689 ClpX C4-type zinc finger C2I28_05005 PF07724 AAA domain (Cdc48 subfamily) C2I28_05005 PF10431 C-terminal, D2-small domain, of ClpB protein C2I28_05010 PF05697 Bacterial trigger factor protein (TF) C2I28_05010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C2I28_05010 PF05698 Bacterial trigger factor protein (TF) C-terminus C2I28_05020 PF00694 Aconitase C-terminal domain C2I28_05025 PF00330 Aconitase family (aconitate hydratase) C2I28_05030 PF00180 Isocitrate/isopropylmalate dehydrogenase C2I28_05035 PF00682 HMGL-like C2I28_05035 PF08502 LeuA allosteric (dimerisation) domain C2I28_05040 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C2I28_05040 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C2I28_05045 PF10369 Small subunit of acetolactate synthase C2I28_05045 PF01842 ACT domain C2I28_05050 PF00205 Thiamine pyrophosphate enzyme, central domain C2I28_05050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_05050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C2I28_05060 PF12850 Calcineurin-like phosphoesterase superfamily domain C2I28_05065 PF01725 Ham1 family C2I28_05070 PF03725 3' exoribonuclease family, domain 2 C2I28_05070 PF01138 3' exoribonuclease family, domain 1 C2I28_05075 PF10646 Sporulation and spore germination C2I28_05080 PF01177 Asp/Glu/Hydantoin racemase C2I28_05085 PF01047 MarR family C2I28_05090 PF08000 Bacterial PH domain C2I28_05090 PF11724 YvbH-like oligomerisation region C2I28_05095 PF01384 Phosphate transporter family C2I28_05100 PF01865 Protein of unknown function DUF47 C2I28_05105 PF00905 Penicillin binding protein transpeptidase domain C2I28_05105 PF03717 Penicillin-binding Protein dimerisation domain C2I28_05105 PF05223 NTF2-like N-terminal transpeptidase domain C2I28_05115 PF00296 Luciferase-like monooxygenase C2I28_05120 PF03358 NADPH-dependent FMN reductase C2I28_05125 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_05130 PF09084 NMT1/THI5 like C2I28_05135 PF00005 ABC transporter C2I28_05140 PF00999 Sodium/hydrogen exchanger family C2I28_05145 PF02080 TrkA-C domain C2I28_05155 PF00196 Bacterial regulatory proteins, luxR family C2I28_05160 PF03061 Thioesterase superfamily C2I28_05165 PF13085 2Fe-2S iron-sulfur cluster binding domain C2I28_05165 PF13183 4Fe-4S dicluster domain C2I28_05170 PF00890 FAD binding domain C2I28_05170 PF02910 Fumarate reductase flavoprotein C-term C2I28_05175 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C2I28_05180 PF10702 Protein of unknown function (DUF2507) C2I28_05185 PF01842 ACT domain C2I28_05185 PF13840 ACT domain C2I28_05185 PF00696 Amino acid kinase family C2I28_05190 PF08459 UvrC Helix-hairpin-helix N-terminal C2I28_05190 PF02151 UvrB/uvrC motif C2I28_05190 PF01541 GIY-YIG catalytic domain C2I28_05195 PF00085 Thioredoxin C2I28_05205 PF00766 Electron transfer flavoprotein FAD-binding domain C2I28_05205 PF01012 Electron transfer flavoprotein domain C2I28_05210 PF01012 Electron transfer flavoprotein domain C2I28_05215 PF00378 Enoyl-CoA hydratase/isomerase C2I28_05220 PF00440 Bacterial regulatory proteins, tetR family C2I28_05220 PF08359 YsiA-like protein, C-terminal region C2I28_05225 PF13193 AMP-binding enzyme C-terminal domain C2I28_05225 PF00501 AMP-binding enzyme C2I28_05230 PF01717 Cobalamin-independent synthase, Catalytic domain C2I28_05235 PF03994 Domain of Unknown Function (DUF350) C2I28_05240 PF01713 Smr domain C2I28_05240 PF00488 MutS domain V C2I28_05245 PF02811 PHP domain C2I28_05245 PF14716 Helix-hairpin-helix domain C2I28_05245 PF14791 DNA polymerase beta thumb C2I28_05250 PF02674 Colicin V production protein C2I28_05255 PF05164 Cell division protein ZapA C2I28_05260 PF11858 Domain of unknown function (DUF3378) C2I28_05260 PF01351 Ribonuclease HII C2I28_05265 PF03483 B3/4 domain C2I28_05265 PF03484 tRNA synthetase B5 domain C2I28_05265 PF03147 Ferredoxin-fold anticodon binding domain C2I28_05265 PF01588 Putative tRNA binding domain C2I28_05265 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C2I28_05270 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C2I28_05270 PF01409 tRNA synthetases class II core domain (F) C2I28_05275 PF08032 RNA 2'-O ribose methyltransferase substrate binding C2I28_05275 PF00588 SpoU rRNA Methylase family C2I28_05280 PF14098 Small, acid-soluble spore protein I C2I28_05285 PF05343 M42 glutamyl aminopeptidase C2I28_05305 PF00453 Ribosomal protein L20 C2I28_05310 PF01632 Ribosomal protein L35 C2I28_05315 PF00707 Translation initiation factor IF-3, C-terminal domain C2I28_05315 PF05198 Translation initiation factor IF-3, N-terminal domain C2I28_05320 PF03129 Anticodon binding domain C2I28_05320 PF02824 TGS domain C2I28_05320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C2I28_05320 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C2I28_05325 PF08812 YtxC-like family C2I28_05330 PF07319 Primosomal protein DnaI N-terminus C2I28_05330 PF01695 IstB-like ATP binding protein C2I28_05335 PF07261 Replication initiation and membrane attachment C2I28_05340 PF03477 ATP cone domain C2I28_05350 PF02675 S-adenosylmethionine decarboxylase C2I28_05355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C2I28_05355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C2I28_05360 PF01121 Dephospho-CoA kinase C2I28_05365 PF02659 Putative manganese efflux pump C2I28_05370 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C2I28_05370 PF06827 Zinc finger found in FPG and IleRS C2I28_05370 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C2I28_05375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C2I28_05375 PF00476 DNA polymerase family A C2I28_05375 PF01367 5'-3' exonuclease, C-terminal SAM fold C2I28_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_05380 PF16736 Single Cache-like C2I28_05380 PF00989 PAS fold C2I28_05380 PF00512 His Kinase A (phospho-acceptor) domain C2I28_05385 PF00486 Transcriptional regulatory protein, C terminal C2I28_05385 PF00072 Response regulator receiver domain C2I28_05395 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C2I28_05395 PF00056 lactate/malate dehydrogenase, NAD binding domain C2I28_05400 PF00180 Isocitrate/isopropylmalate dehydrogenase C2I28_05405 PF00285 Citrate synthase, C-terminal domain C2I28_05410 PF04284 Protein of unknown function (DUF441) C2I28_05415 PF01594 AI-2E family transporter C2I28_05420 PF04186 FxsA cytoplasmic membrane protein C2I28_05425 PF00391 PEP-utilising enzyme, mobile domain C2I28_05425 PF00224 Pyruvate kinase, barrel domain C2I28_05425 PF02887 Pyruvate kinase, alpha/beta domain C2I28_05430 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C2I28_05435 PF17848 Acetyl-coA carboxylase zinc finger domain C2I28_05435 PF01039 Carboxyl transferase domain C2I28_05440 PF00392 Bacterial regulatory proteins, gntR family C2I28_05440 PF07729 FCD domain C2I28_05445 PF00390 Malic enzyme, N-terminal domain C2I28_05445 PF03949 Malic enzyme, NAD binding domain C2I28_05450 PF14579 Helix-hairpin-helix motif C2I28_05450 PF07733 Bacterial DNA polymerase III alpha NTPase domain C2I28_05450 PF02811 PHP domain C2I28_05450 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C2I28_05450 PF01336 OB-fold nucleic acid binding domain C2I28_05455 PF14034 Sporulation protein YtrH C2I28_05465 PF01368 DHH family C2I28_05465 PF02272 DHHA1 domain C2I28_05470 PF14007 YtpI-like protein C2I28_05475 PF03061 Thioesterase superfamily C2I28_05475 PF00571 CBS domain C2I28_05475 PF07085 DRTGG domain C2I28_05475 PF00392 Bacterial regulatory proteins, gntR family C2I28_05490 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C2I28_05490 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C2I28_05495 PF14698 Argininosuccinate lyase C-terminal C2I28_05495 PF00206 Lyase C2I28_05500 PF00764 Arginosuccinate synthase C2I28_05515 PF00871 Acetokinase family C2I28_05520 PF02384 N-6 DNA Methylase C2I28_05525 PF08534 Redoxin C2I28_05530 PF09579 Sporulation protein YtfJ (Spore_YtfJ) C2I28_05535 PF11167 Protein of unknown function (DUF2953) C2I28_05540 PF06271 RDD family C2I28_05545 PF01343 Peptidase family S49 C2I28_05550 PF01513 ATP-NAD kinase C2I28_05555 PF07969 Amidohydrolase family C2I28_05560 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_05565 PF02568 Thiamine biosynthesis protein (ThiI) C2I28_05565 PF02926 THUMP domain C2I28_05570 PF00266 Aminotransferase class-V C2I28_05575 PF05525 Branched-chain amino acid transport protein C2I28_05580 PF06160 Septation ring formation regulator, EzrA C2I28_05585 PF02811 PHP domain C2I28_05590 PF00440 Bacterial regulatory proteins, tetR family C2I28_05595 PF13185 GAF domain C2I28_05600 PF00163 Ribosomal protein S4/S9 N-terminal domain C2I28_05600 PF01479 S4 domain C2I28_05605 PF01479 S4 domain C2I28_05605 PF00579 tRNA synthetases class I (W and Y) C2I28_05610 PF13193 AMP-binding enzyme C-terminal domain C2I28_05610 PF00501 AMP-binding enzyme C2I28_05615 PF00583 Acetyltransferase (GNAT) family C2I28_05620 PF00571 CBS domain C2I28_05625 PF00850 Histone deacetylase domain C2I28_05630 PF13677 Membrane MotB of proton-channel complex MotA/MotB C2I28_05630 PF00691 OmpA family C2I28_05635 PF01618 MotA/TolQ/ExbB proton channel family C2I28_05640 PF00356 Bacterial regulatory proteins, lacI family C2I28_05645 PF00793 DAHP synthetase I family C2I28_05645 PF01817 Chorismate mutase type II C2I28_05650 PF11009 Protein of unknown function (DUF2847) C2I28_05655 PF12732 YtxH-like protein C2I28_05665 PF02073 Thermophilic metalloprotease (M29) C2I28_05670 PF08245 Mur ligase middle domain C2I28_05670 PF02875 Mur ligase family, glutamate ligase domain C2I28_05670 PF01225 Mur ligase family, catalytic domain C2I28_05680 PF01580 FtsK/SpoIIIE family C2I28_05680 PF09397 Ftsk gamma domain C2I28_05680 PF17854 FtsK alpha domain C2I28_05685 PF14794 Domain of unknown function (DUF4479) C2I28_05685 PF01588 Putative tRNA binding domain C2I28_05690 PF07285 Protein of unknown function (DUF1444) C2I28_05695 PF00085 Thioredoxin C2I28_05700 PF01931 Protein of unknown function DUF84 C2I28_05705 PF05343 M42 glutamyl aminopeptidase C2I28_05710 PF03413 Peptidase propeptide and YPEB domain C2I28_05715 PF00753 Metallo-beta-lactamase superfamily C2I28_05720 PF02390 Putative methyltransferase C2I28_05725 PF14165 YtzH-like protein C2I28_05730 PF01636 Phosphotransferase enzyme family C2I28_05735 PF00128 Alpha amylase, catalytic domain C2I28_05735 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C2I28_05735 PF17999 Pullulanase N1-terminal domain C2I28_05750 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_05760 PF01546 Peptidase family M20/M25/M40 C2I28_05765 PF08220 DeoR-like helix-turn-helix domain C2I28_05770 PF00849 RNA pseudouridylate synthase C2I28_05770 PF01479 S4 domain C2I28_05775 PF01943 Polysaccharide biosynthesis protein C2I28_05775 PF14667 Polysaccharide biosynthesis C-terminal domain C2I28_05790 PF00581 Rhodanese-like domain C2I28_05795 PF13603 Leucyl-tRNA synthetase, Domain 2 C2I28_05795 PF00133 tRNA synthetases class I (I, L, M and V) C2I28_05795 PF08264 Anticodon-binding domain of tRNA C2I28_05795 PF09334 tRNA synthetases class I (M) C2I28_05805 PF07690 Major Facilitator Superfamily C2I28_05815 PF10732 Protein of unknown function (DUF2524) C2I28_05820 PF04055 Radical SAM superfamily C2I28_05820 PF16199 Radical_SAM C-terminal domain C2I28_05825 PF06962 Putative rRNA methylase C2I28_05830 PF10776 Protein of unknown function (DUF2600) C2I28_05835 PF12146 Serine aminopeptidase, S33 C2I28_05840 PF00132 Bacterial transferase hexapeptide (six repeats) C2I28_05845 PF01569 PAP2 superfamily C2I28_05850 PF00534 Glycosyl transferases group 1 C2I28_05850 PF13439 Glycosyltransferase Family 4 C2I28_05855 PF02773 S-adenosylmethionine synthetase, C-terminal domain C2I28_05855 PF02772 S-adenosylmethionine synthetase, central domain C2I28_05855 PF00438 S-adenosylmethionine synthetase, N-terminal domain C2I28_05860 PF01293 Phosphoenolpyruvate carboxykinase C2I28_05865 PF10763 Protein of unknown function (DUF2584) C2I28_05870 PF00326 Prolyl oligopeptidase family C2I28_05880 PF00005 ABC transporter C2I28_05885 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_05890 PF00293 NUDIX domain C2I28_05900 PF05105 Bacteriophage holin family C2I28_05905 PF00210 Ferritin-like domain C2I28_05910 PF02664 S-Ribosylhomocysteinase (LuxS) C2I28_05915 PF01809 Putative membrane protein insertion efficiency factor C2I28_05920 PF00484 Carbonic anhydrase C2I28_05925 PF02492 CobW/HypB/UreG, nucleotide-binding domain C2I28_05925 PF07683 Cobalamin synthesis protein cobW C-terminal domain C2I28_05930 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment C2I28_05930 PF01297 Zinc-uptake complex component A periplasmic C2I28_05935 PF01197 Ribosomal protein L31 C2I28_05940 PF01654 Cytochrome bd terminal oxidase subunit I C2I28_05945 PF02322 Cytochrome bd terminal oxidase subunit II C2I28_05950 PF00258 Flavodoxin C2I28_05965 PF07561 Domain of Unknown Function (DUF1540) C2I28_05975 PF00268 Ribonucleotide reductase, small chain C2I28_05980 PF02867 Ribonucleotide reductase, barrel domain C2I28_05980 PF03477 ATP cone domain C2I28_05980 PF00317 Ribonucleotide reductase, all-alpha domain C2I28_05985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C2I28_05985 PF13378 Enolase C-terminal domain-like C2I28_05990 PF13193 AMP-binding enzyme C-terminal domain C2I28_05990 PF00501 AMP-binding enzyme C2I28_05995 PF00378 Enoyl-CoA hydratase/isomerase C2I28_06000 PF00561 alpha/beta hydrolase fold C2I28_06005 PF16582 Middle domain of thiamine pyrophosphate C2I28_06005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_06005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C2I28_06010 PF00425 chorismate binding enzyme C2I28_06015 PF01258 Prokaryotic dksA/traR C4-type zinc finger C2I28_06025 PF00343 Carbohydrate phosphorylase C2I28_06030 PF00534 Glycosyl transferases group 1 C2I28_06030 PF08323 Starch synthase catalytic domain C2I28_06035 PF00483 Nucleotidyl transferase C2I28_06040 PF00483 Nucleotidyl transferase C2I28_06045 PF00128 Alpha amylase, catalytic domain C2I28_06045 PF02806 Alpha amylase, C-terminal all-beta domain C2I28_06045 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C2I28_06170 PF00501 AMP-binding enzyme C2I28_06170 PF13193 AMP-binding enzyme C-terminal domain C2I28_06175 PF02308 MgtC family C2I28_06180 PF14824 Sirohaem biosynthesis protein central C2I28_06185 PF01903 CbiX C2I28_06190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_06200 PF01747 ATP-sulfurylase C2I28_06200 PF14306 PUA-like domain C2I28_06205 PF01384 Phosphate transporter family C2I28_06210 PF01507 Phosphoadenosine phosphosulfate reductase family C2I28_06215 PF10372 Bacterial membrane-spanning protein N-terminus C2I28_06215 PF02457 DisA bacterial checkpoint controller nucleotide-binding C2I28_06220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_06225 PF07885 Ion channel C2I28_06225 PF02254 TrkA-N domain C2I28_06230 PF08868 YugN-like family C2I28_06235 PF00342 Phosphoglucose isomerase C2I28_06245 PF13244 Domain of unknown function (DUF4040) C2I28_06245 PF00361 Proton-conducting membrane transporter C2I28_06245 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C2I28_06250 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C2I28_06255 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C2I28_06260 PF00361 Proton-conducting membrane transporter C2I28_06265 PF01899 Na+/H+ ion antiporter subunit C2I28_06270 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) C2I28_06275 PF03334 Na+/H+ antiporter subunit C2I28_06280 PF00465 Iron-containing alcohol dehydrogenase C2I28_06285 PF04070 Domain of unknown function (DUF378) C2I28_06290 PF00575 S1 RNA binding domain C2I28_06295 PF00155 Aminotransferase class I and II C2I28_06300 PF01037 Lrp/AsnC ligand binding domain C2I28_06305 PF00561 alpha/beta hydrolase fold C2I28_06305 PF08386 TAP-like protein C2I28_06310 PF00155 Aminotransferase class I and II C2I28_06315 PF00080 Copper/zinc superoxide dismutase (SODC) C2I28_06325 PF08810 Kinase associated protein B C2I28_06330 PF00929 Exonuclease C2I28_06335 PF03061 Thioesterase superfamily C2I28_06345 PF01966 HD domain C2I28_06355 PF03553 Na+/H+ antiporter family C2I28_06355 PF13726 Na+-H+ antiporter family C2I28_06360 PF02789 Cytosol aminopeptidase family, N-terminal domain C2I28_06360 PF00883 Cytosol aminopeptidase family, catalytic domain C2I28_06365 PF02681 Divergent PAP2 family C2I28_06370 PF06725 3D domain C2I28_06375 PF14068 Putative membrane protein C2I28_06380 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_06385 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_06395 PF01521 Iron-sulphur cluster biosynthesis C2I28_06400 PF01678 Diaminopimelate epimerase C2I28_06405 PF07293 Protein of unknown function (DUF1450) C2I28_06410 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_06415 PF07315 Protein of unknown function (DUF1462) C2I28_06420 PF01106 NifU-like domain C2I28_06425 PF00288 GHMP kinases N terminal domain C2I28_06425 PF08544 GHMP kinases C terminal C2I28_06430 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_06435 PF03447 Homoserine dehydrogenase, NAD binding domain C2I28_06435 PF01842 ACT domain C2I28_06435 PF00742 Homoserine dehydrogenase C2I28_06440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C2I28_06440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C2I28_06450 PF04608 Phosphatidylglycerophosphatase A C2I28_06455 PF13344 Haloacid dehalogenase-like hydrolase C2I28_06460 PF01934 Protein of unknown function DUF86 C2I28_06470 PF06265 Protein of unknown function (DUF1027) C2I28_06475 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) C2I28_06480 PF04055 Radical SAM superfamily C2I28_06480 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family C2I28_06485 PF01551 Peptidase family M23 C2I28_06495 PF00209 Sodium:neurotransmitter symporter family C2I28_06500 PF09560 Sporulation protein YunB (Spo_YunB) C2I28_06505 PF08827 Domain of unknown function (DUF1805) C2I28_06510 PF01904 Protein of unknown function DUF72 C2I28_06515 PF01458 Uncharacterized protein family (UPF0051) C2I28_06520 PF01592 NifU-like N terminal domain C2I28_06525 PF00266 Aminotransferase class-V C2I28_06530 PF01458 Uncharacterized protein family (UPF0051) C2I28_06535 PF00005 ABC transporter C2I28_06540 PF02627 Carboxymuconolactone decarboxylase family C2I28_06545 PF03180 NLPA lipoprotein C2I28_06550 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_06555 PF09383 NIL domain C2I28_06555 PF00005 ABC transporter C2I28_06560 PF00085 Thioredoxin C2I28_06565 PF01751 Toprim domain C2I28_06575 PF01597 Glycine cleavage H-protein C2I28_06580 PF03960 ArsC family C2I28_06585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_06585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_06585 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_06590 PF00108 Thiolase, N-terminal domain C2I28_06590 PF02803 Thiolase, C-terminal domain C2I28_06595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C2I28_06595 PF00378 Enoyl-CoA hydratase/isomerase C2I28_06595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C2I28_06600 PF14115 YuzL-like protein C2I28_06605 PF01619 Proline dehydrogenase C2I28_06610 PF10835 Protein of unknown function (DUF2573) C2I28_06620 PF00005 ABC transporter C2I28_06625 PF01032 FecCD transport family C2I28_06630 PF01032 FecCD transport family C2I28_06635 PF01497 Periplasmic binding protein C2I28_06640 PF13217 Protein of unknown function (DUF4025) C2I28_06645 PF00873 AcrB/AcrD/AcrF family C2I28_06650 PF00440 Bacterial regulatory proteins, tetR family C2I28_06665 PF07690 Major Facilitator Superfamily C2I28_06670 PF02627 Carboxymuconolactone decarboxylase family C2I28_06675 PF03466 LysR substrate binding domain C2I28_06675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_06680 PF02525 Flavodoxin-like fold C2I28_06685 PF03239 Iron permease FTR1 family C2I28_06690 PF00672 HAMP domain C2I28_06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_06690 PF00512 His Kinase A (phospho-acceptor) domain C2I28_06695 PF00072 Response regulator receiver domain C2I28_06695 PF00486 Transcriptional regulatory protein, C terminal C2I28_06700 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase C2I28_06705 PF01569 PAP2 superfamily C2I28_06710 PF01047 MarR family C2I28_06715 PF00881 Nitroreductase family C2I28_06720 PF02597 ThiS family C2I28_06725 PF02391 MoaE protein C2I28_06730 PF03205 Molybdopterin guanine dinucleotide synthesis protein B C2I28_06735 PF00994 Probable molybdopterin binding domain C2I28_06735 PF03454 MoeA C-terminal region (domain IV) C2I28_06735 PF03453 MoeA N-terminal region (domain I and II) C2I28_06740 PF00899 ThiF family C2I28_06745 PF12804 MobA-like NTP transferase domain C2I28_06750 PF06463 Molybdenum Cofactor Synthesis C C2I28_06750 PF04055 Radical SAM superfamily C2I28_06755 PF02634 FdhD/NarQ family C2I28_06760 PF10057 Uncharacterized conserved protein (DUF2294) C2I28_06765 PF00384 Molybdopterin oxidoreductase C2I28_06765 PF00037 4Fe-4S binding domain C2I28_06765 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C2I28_06765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C2I28_06765 PF01568 Molydopterin dinucleotide binding domain C2I28_06770 PF07849 Protein of unknown function (DUF1641) C2I28_06780 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_06790 PF01668 SmpB protein C2I28_06795 PF00773 RNB domain C2I28_06795 PF17876 Cold shock domain C2I28_06795 PF08206 Ribonuclease B OB domain C2I28_06795 PF00575 S1 RNA binding domain C2I28_06800 PF12146 Serine aminopeptidase, S33 C2I28_06805 PF03840 Preprotein translocase SecG subunit C2I28_06810 PF03952 Enolase, N-terminal domain C2I28_06810 PF00113 Enolase, C-terminal TIM barrel domain C2I28_06815 PF01676 Metalloenzyme superfamily C2I28_06815 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C2I28_06820 PF00121 Triosephosphate isomerase C2I28_06825 PF00162 Phosphoglycerate kinase C2I28_06830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C2I28_06830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C2I28_06835 PF04198 Putative sugar-binding domain C2I28_06845 PF04963 Sigma-54 factor, core binding domain C2I28_06845 PF04552 Sigma-54, DNA binding domain C2I28_06845 PF00309 Sigma-54 factor, Activator interacting domain (AID) C2I28_06860 PF00574 Clp protease C2I28_06865 PF00381 PTS HPr component phosphorylation site C2I28_06870 PF02650 WhiA C-terminal HTH domain C2I28_06870 PF14527 WhiA LAGLIDADG-like domain C2I28_06870 PF10298 WhiA N-terminal LAGLIDADG-like domain C2I28_06875 PF01933 Uncharacterised protein family UPF0052 C2I28_06880 PF03668 P-loop ATPase protein family C2I28_06885 PF00293 NUDIX domain C2I28_06890 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_06900 PF01502 Phosphoribosyl-AMP cyclohydrolase C2I28_06900 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C2I28_06905 PF00977 Histidine biosynthesis protein C2I28_06910 PF00977 Histidine biosynthesis protein C2I28_06915 PF00117 Glutamine amidotransferase class-I C2I28_06920 PF00475 Imidazoleglycerol-phosphate dehydratase C2I28_06925 PF00815 Histidinol dehydrogenase C2I28_06930 PF01634 ATP phosphoribosyltransferase C2I28_06935 PF13393 Histidyl-tRNA synthetase C2I28_06940 PF14602 Hexapeptide repeat of succinyl-transferase C2I28_06945 PF13419 Haloacid dehalogenase-like hydrolase C2I28_06950 PF01790 Prolipoprotein diacylglyceryl transferase C2I28_06955 PF02603 HPr Serine kinase N terminus C2I28_06955 PF07475 HPr Serine kinase C-terminal domain C2I28_06960 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV C2I28_06965 PF04024 PspC domain C2I28_06970 PF13349 Putative adhesin C2I28_06980 PF00005 ABC transporter C2I28_06980 PF17755 UvrA DNA-binding domain C2I28_06980 PF17760 UvrA interaction domain C2I28_06985 PF02151 UvrB/uvrC motif C2I28_06985 PF04851 Type III restriction enzyme, res subunit C2I28_06985 PF00271 Helicase conserved C-terminal domain C2I28_06985 PF17757 UvrB interaction domain C2I28_06985 PF12344 Ultra-violet resistance protein B C2I28_06990 PF00072 Response regulator receiver domain C2I28_06990 PF00158 Sigma-54 interaction domain C2I28_06990 PF02954 Bacterial regulatory protein, Fis family C2I28_06995 PF01619 Proline dehydrogenase C2I28_07000 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) C2I28_07005 PF17820 PDZ domain C2I28_07010 PF17820 PDZ domain C2I28_07010 PF03572 Peptidase family S41 C2I28_07010 PF01471 Putative peptidoglycan binding domain C2I28_07015 PF01476 LysM domain C2I28_07015 PF01551 Peptidase family M23 C2I28_07015 PF08525 Opacity-associated protein A N-terminal motif C2I28_07020 PF02687 FtsX-like permease family C2I28_07020 PF18075 FtsX extracellular domain C2I28_07025 PF00005 ABC transporter C2I28_07030 PF03358 NADPH-dependent FMN reductase C2I28_07035 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C2I28_07040 PF00902 Sec-independent protein translocase protein (TatC) C2I28_07045 PF02416 mttA/Hcf106 family C2I28_07050 PF16655 PhoD-like phosphatase, N-terminal domain C2I28_07050 PF09423 PhoD-like phosphatase C2I28_07060 PF01043 SecA preprotein cross-linking domain C2I28_07060 PF07517 SecA DEAD-like domain C2I28_07060 PF02810 SEC-C motif C2I28_07060 PF07516 SecA Wing and Scaffold domain C2I28_07070 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C2I28_07070 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus C2I28_07080 PF02561 Flagellar protein FliS C2I28_07085 PF07195 Flagellar hook-associated protein 2 C-terminus C2I28_07085 PF07196 Flagellin hook IN motif C2I28_07085 PF02465 Flagellar hook-associated protein 2 N-terminus C2I28_07095 PF00324 Amino acid permease C2I28_07105 PF00171 Aldehyde dehydrogenase family C2I28_07110 PF00465 Iron-containing alcohol dehydrogenase C2I28_07120 PF02599 Global regulator protein family C2I28_07125 PF02623 FliW protein C2I28_07130 PF00669 Bacterial flagellin N-terminal helical region C2I28_07130 PF00700 Bacterial flagellin C-terminal helical region C2I28_07135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C2I28_07135 PF00460 Flagella basal body rod protein C2I28_07160 PF04851 Type III restriction enzyme, res subunit C2I28_07160 PF00271 Helicase conserved C-terminal domain C2I28_07165 PF02645 Uncharacterised protein, DegV family COG1307 C2I28_07170 PF03885 Protein of unknown function (DUF327) C2I28_07180 PF00196 Bacterial regulatory proteins, luxR family C2I28_07180 PF00072 Response regulator receiver domain C2I28_07185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_07185 PF07730 Histidine kinase C2I28_07185 PF05384 Sensor protein DegS C2I28_07190 PF01205 Uncharacterized protein family UPF0029 C2I28_07190 PF09186 Domain of unknown function (DUF1949) C2I28_07195 PF03816 Cell envelope-related transcriptional attenuator domain C2I28_07200 PF00953 Glycosyl transferase family 4 C2I28_07210 PF15975 Flotillin C2I28_07210 PF01145 SPFH domain / Band 7 family C2I28_07215 PF03808 Glycosyl transferase WecB/TagA/CpsF family C2I28_07220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C2I28_07220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C2I28_07220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C2I28_07225 PF00483 Nucleotidyl transferase C2I28_07235 PF00176 SNF2 family N-terminal domain C2I28_07235 PF12419 SNF2 Helicase protein C2I28_07235 PF00271 Helicase conserved C-terminal domain C2I28_07240 PF01476 LysM domain C2I28_07240 PF00877 NlpC/P60 family C2I28_07245 PF00436 Single-strand binding protein family C2I28_07250 PF14183 YwpF-like protein C2I28_07255 PF01381 Helix-turn-helix C2I28_07260 PF07977 FabA-like domain C2I28_07265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C2I28_07265 PF00460 Flagella basal body rod protein C2I28_07270 PF00460 Flagella basal body rod protein C2I28_07270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C2I28_07280 PF12116 Stage III sporulation protein D C2I28_07285 PF01551 Peptidase family M23 C2I28_07290 PF08486 Stage II sporulation protein C2I28_07295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C2I28_07305 PF06612 Protein of unknown function (DUF1146) C2I28_07310 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C2I28_07310 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain C2I28_07315 PF02874 ATP synthase alpha/beta family, beta-barrel domain C2I28_07315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C2I28_07320 PF00231 ATP synthase C2I28_07325 PF00306 ATP synthase alpha/beta chain, C terminal domain C2I28_07325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C2I28_07325 PF02874 ATP synthase alpha/beta family, beta-barrel domain C2I28_07330 PF00213 ATP synthase delta (OSCP) subunit C2I28_07335 PF00430 ATP synthase B/B' CF(0) C2I28_07340 PF00137 ATP synthase subunit C C2I28_07345 PF00119 ATP synthase A chain C2I28_07350 PF03899 ATP synthase I chain C2I28_07360 PF00082 Subtilase family C2I28_07360 PF02225 PA domain C2I28_07360 PF05922 Peptidase inhibitor I9 C2I28_07360 PF13860 FlgD Ig-like domain C2I28_07365 PF02350 UDP-N-acetylglucosamine 2-epimerase C2I28_07375 PF00464 Serine hydroxymethyltransferase C2I28_07380 PF04260 Protein of unknown function (DUF436) C2I28_07385 PF02502 Ribose/Galactose Isomerase C2I28_07390 PF01451 Low molecular weight phosphotyrosine protein phosphatase C2I28_07395 PF02659 Putative manganese efflux pump C2I28_07400 PF01300 Telomere recombination C2I28_07400 PF03481 Putative GTP-binding controlling metal-binding C2I28_07410 PF09551 Stage II sporulation protein R (spore_II_R) C2I28_07415 PF13847 Methyltransferase domain C2I28_07415 PF17827 PrmC N-terminal domain C2I28_07420 PF03462 PCRF domain C2I28_07420 PF00472 RF-1 domain C2I28_07425 PF00265 Thymidine kinase C2I28_07430 PF01197 Ribosomal protein L31 C2I28_07435 PF07497 Rho termination factor, RNA-binding domain C2I28_07435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C2I28_07435 PF07498 Rho termination factor, N-terminal domain C2I28_07440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C2I28_07445 PF00923 Transaldolase/Fructose-6-phosphate aldolase C2I28_07450 PF01116 Fructose-bisphosphate aldolase class-II C2I28_07455 PF00072 Response regulator receiver domain C2I28_07460 PF10740 Domain of unknown function (DUF2529) C2I28_07465 PF06418 CTP synthase N-terminus C2I28_07465 PF00117 Glutamine amidotransferase class-I C2I28_07470 PF05066 HB1, ASXL, restriction endonuclease HTH domain C2I28_07475 PF02310 B12 binding domain C2I28_07475 PF01642 Methylmalonyl-CoA mutase C2I28_07485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_07485 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_07485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_07490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_07490 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_07490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_07495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C2I28_07495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C2I28_07500 PF00108 Thiolase, N-terminal domain C2I28_07500 PF02803 Thiolase, C-terminal domain C2I28_07505 PF02754 Cysteine-rich domain C2I28_07505 PF13183 4Fe-4S dicluster domain C2I28_07510 PF13091 PLD-like domain C2I28_07515 PF03851 UV-endonuclease UvdE C2I28_07520 PF05746 DALR anticodon binding domain C2I28_07520 PF00750 tRNA synthetases class I (R) C2I28_07520 PF03485 Arginyl tRNA synthetase N terminal domain C2I28_07525 PF09148 Domain of unknown function (DUF1934) C2I28_07530 PF00491 Arginase family C2I28_07535 PF17284 Spermidine synthase tetramerisation domain C2I28_07540 PF00912 Transglycosylase C2I28_07540 PF00905 Penicillin binding protein transpeptidase domain C2I28_07545 PF08741 YwhD family C2I28_07550 PF02163 Peptidase family M50 C2I28_07555 PF01361 Tautomerase enzyme C2I28_07565 PF01966 HD domain C2I28_07570 PF07293 Protein of unknown function (DUF1450) C2I28_07580 PF03099 Biotin/lipoate A/B protein ligase family C2I28_07585 PF01515 Phosphate acetyl/butaryl transferase C2I28_07590 PF06778 Chlorite dismutase C2I28_07595 PF07486 Cell Wall Hydrolase C2I28_07600 PF09671 Spore coat protein (Spore_GerQ) C2I28_07605 PF04241 Protein of unknown function (DUF423) C2I28_07615 PF03167 Uracil DNA glycosylase superfamily C2I28_07625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain C2I28_07625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain C2I28_07630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C2I28_07630 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain C2I28_07635 PF17853 GGDEF-like domain C2I28_07635 PF13556 PucR C-terminal helix-turn-helix domain C2I28_07635 PF06018 CodY GAF-like domain C2I28_07640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C2I28_07640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C2I28_07650 PF08543 Phosphomethylpyrimidine kinase C2I28_07660 PF13419 Haloacid dehalogenase-like hydrolase C2I28_07665 PF00367 phosphotransferase system, EIIB C2I28_07665 PF02378 Phosphotransferase system, EIIC C2I28_07665 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C2I28_07670 PF03372 Endonuclease/Exonuclease/phosphatase family C2I28_07675 PF00534 Glycosyl transferases group 1 C2I28_07675 PF13439 Glycosyltransferase Family 4 C2I28_07690 PF00892 EamA-like transporter family C2I28_07700 PF03023 Lipid II flippase MurJ C2I28_07715 PF00664 ABC transporter transmembrane region C2I28_07715 PF00005 ABC transporter C2I28_07720 PF00664 ABC transporter transmembrane region C2I28_07720 PF00005 ABC transporter C2I28_07725 PF02322 Cytochrome bd terminal oxidase subunit II C2I28_07730 PF01654 Cytochrome bd terminal oxidase subunit I C2I28_07735 PF12821 Threonine/Serine exporter, ThrE C2I28_07740 PF06738 Putative threonine/serine exporter C2I28_07745 PF00356 Bacterial regulatory proteins, lacI family C2I28_07750 PF01476 LysM domain C2I28_07750 PF00756 Putative esterase C2I28_07755 PF00083 Sugar (and other) transporter C2I28_07760 PF00171 Aldehyde dehydrogenase family C2I28_07765 PF00696 Amino acid kinase family C2I28_07770 PF13722 5TM C-terminal transporter carbon starvation CstA C2I28_07770 PF02554 Carbon starvation protein CstA C2I28_07775 PF00199 Catalase C2I28_07775 PF06628 Catalase-related immune-responsive C2I28_07785 PF09154 Domain of unknown function (DUF1939) C2I28_07785 PF00128 Alpha amylase, catalytic domain C2I28_07790 PF00939 Sodium:sulfate symporter transmembrane region C2I28_07795 PF17785 PUA-like domain C2I28_07795 PF10672 S-adenosylmethionine-dependent methyltransferase C2I28_07805 PF00486 Transcriptional regulatory protein, C terminal C2I28_07805 PF00072 Response regulator receiver domain C2I28_07810 PF00512 His Kinase A (phospho-acceptor) domain C2I28_07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_07810 PF00672 HAMP domain C2I28_07825 PF00293 NUDIX domain C2I28_07835 PF01207 Dihydrouridine synthase (Dus) C2I28_07840 PF02590 Predicted SPOUT methyltransferase C2I28_07850 PF13180 PDZ domain C2I28_07855 PF00753 Metallo-beta-lactamase superfamily C2I28_07860 PF09648 YycH protein C2I28_07870 PF13426 PAS domain C2I28_07870 PF00512 His Kinase A (phospho-acceptor) domain C2I28_07870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_07870 PF00672 HAMP domain C2I28_07875 PF00072 Response regulator receiver domain C2I28_07875 PF00486 Transcriptional regulatory protein, C terminal C2I28_07900 PF00709 Adenylosuccinate synthetase C2I28_07905 PF03796 DnaB-like helicase C terminal domain C2I28_07905 PF00772 DnaB-like helicase N terminal domain C2I28_07910 PF03948 Ribosomal protein L9, C-terminal domain C2I28_07910 PF01281 Ribosomal protein L9, N-terminal domain C2I28_07915 PF02272 DHHA1 domain C2I28_07915 PF01368 DHH family C2I28_07925 PF01084 Ribosomal protein S18 C2I28_07930 PF00436 Single-strand binding protein family C2I28_07935 PF01250 Ribosomal protein S6 C2I28_07940 PF06071 Protein of unknown function (DUF933) C2I28_07940 PF01926 50S ribosome-binding GTPase C2I28_07945 PF06107 Bacterial protein of unknown function (DUF951) C2I28_07950 PF00924 Mechanosensitive ion channel C2I28_07960 PF06866 Protein of unknown function (DUF1256) C2I28_07965 PF17762 HTH domain found in ParB protein C2I28_07965 PF02195 ParB-like nuclease domain C2I28_07970 PF13614 AAA domain C2I28_07975 PF02195 ParB-like nuclease domain C2I28_07975 PF17762 HTH domain found in ParB protein C2I28_07980 PF02527 rRNA small subunit methyltransferase G C2I28_07985 PF01134 Glucose inhibited division protein A C2I28_07985 PF13932 GidA associated domain C2I28_07990 PF01926 50S ribosome-binding GTPase C2I28_07990 PF12631 MnmE helical domain C2I28_07990 PF10396 GTP-binding protein TrmE N-terminus C2I28_07995 PF01424 R3H domain C2I28_07995 PF14804 Jag N-terminus C2I28_08000 PF02096 60Kd inner membrane protein C2I28_08005 PF00825 Ribonuclease P C2I28_08010 PF00468 Ribosomal protein L34 C2I28_08015 PF00308 Bacterial dnaA protein C2I28_08015 PF08299 Bacterial dnaA protein helix-turn-helix C2I28_08015 PF11638 DnaA N-terminal domain C2I28_08020 PF02767 DNA polymerase III beta subunit, central domain C2I28_08020 PF00712 DNA polymerase III beta subunit, N-terminal domain C2I28_08020 PF02768 DNA polymerase III beta subunit, C-terminal domain C2I28_08030 PF02463 RecF/RecN/SMC N terminal domain C2I28_08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_08035 PF00986 DNA gyrase B subunit, carboxyl terminus C2I28_08035 PF00204 DNA gyrase B C2I28_08035 PF01751 Toprim domain C2I28_08040 PF00521 DNA gyrase/topoisomerase IV, subunit A C2I28_08040 PF03989 DNA gyrase C-terminal domain, beta-propeller C2I28_08070 PF14175 YaaC-like Protein C2I28_08075 PF00571 CBS domain C2I28_08075 PF00478 IMP dehydrogenase / GMP reductase domain C2I28_08080 PF07943 Penicillin-binding protein 5, C-terminal domain C2I28_08080 PF00768 D-alanyl-D-alanine carboxypeptidase C2I28_08085 PF01680 SOR/SNZ family C2I28_08090 PF01174 SNO glutamine amidotransferase family C2I28_08095 PF02403 Seryl-tRNA synthetase N-terminal domain C2I28_08095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C2I28_08105 PF01712 Deoxynucleoside kinase C2I28_08110 PF01712 Deoxynucleoside kinase C2I28_08115 PF00704 Glycosyl hydrolases family 18 C2I28_08115 PF01476 LysM domain C2I28_08120 PF00857 Isochorismatase family C2I28_08125 PF14437 MafB19-like deaminase C2I28_08135 PF12169 DNA polymerase III subunits gamma and tau domain III C2I28_08140 PF02575 YbaB/EbfC DNA-binding family C2I28_08145 PF02132 RecR protein C2I28_08145 PF13662 Toprim domain C2I28_08150 PF10704 Protein of unknown function (DUF2508) C2I28_08155 PF07441 SigmaK-factor processing regulatory protein BofA C2I28_08250 PF01276 Orn/Lys/Arg decarboxylase, major domain C2I28_08250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain C2I28_08255 PF02223 Thymidylate kinase C2I28_08260 PF06153 Cyclic-di-AMP receptor C2I28_08265 PF09115 DNA polymerase III, delta subunit, C terminal C2I28_08270 PF04468 PSP1 C-terminal conserved region C2I28_08275 PF06156 Initiation control protein YabA C2I28_08280 PF05175 Methyltransferase small domain C2I28_08285 PF01541 GIY-YIG catalytic domain C2I28_08290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_08295 PF18277 AbrB C-terminal domain C2I28_08295 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin C2I28_08300 PF01588 Putative tRNA binding domain C2I28_08300 PF08264 Anticodon-binding domain of tRNA C2I28_08300 PF09334 tRNA synthetases class I (M) C2I28_08305 PF01026 TatD related DNase C2I28_08310 PF13662 Toprim domain C2I28_08310 PF13331 Domain of unknown function (DUF4093) C2I28_08315 PF00398 Ribosomal RNA adenine dimethylase C2I28_08320 PF05582 YabG peptidase U57 C2I28_08325 PF06257 Biofilm formation stimulator VEG C2I28_08330 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_08335 PF08544 GHMP kinases C terminal C2I28_08335 PF00288 GHMP kinases N terminal domain C2I28_08340 PF00156 Phosphoribosyl transferase domain C2I28_08340 PF09182 Bacterial purine repressor, N-terminal C2I28_08345 PF01042 Endoribonuclease L-PSP C2I28_08350 PF04026 SpoVG C2I28_08355 PF00483 Nucleotidyl transferase C2I28_08355 PF00132 Bacterial transferase hexapeptide (six repeats) C2I28_08360 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C2I28_08360 PF14572 Phosphoribosyl synthetase-associated domain C2I28_08365 PF01386 Ribosomal L25p family C2I28_08365 PF14693 Ribosomal protein TL5, C-terminal domain C2I28_08370 PF01195 Peptidyl-tRNA hydrolase C2I28_08375 PF10955 Protein of unknown function (DUF2757) C2I28_08380 PF02559 CarD-like/TRCF domain C2I28_08380 PF17757 UvrB interaction domain C2I28_08380 PF03461 TRCF domain C2I28_08380 PF00271 Helicase conserved C-terminal domain C2I28_08380 PF00270 DEAD/DEAH box helicase C2I28_08385 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin C2I28_08385 PF15714 Stage V sporulation protein T C-terminal, transcription factor C2I28_08390 PF01943 Polysaccharide biosynthesis protein C2I28_08390 PF14667 Polysaccharide biosynthesis C-terminal domain C2I28_08395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_08395 PF03819 MazG nucleotide pyrophosphohydrolase domain C2I28_08400 PF01479 S4 domain C2I28_08405 PF07873 YabP family C2I28_08410 PF09578 Spore cortex protein YabQ (Spore_YabQ) C2I28_08415 PF04977 Septum formation initiator C2I28_08420 PF00575 S1 RNA binding domain C2I28_08435 PF07228 Stage II sporulation protein E (SpoIIE) C2I28_08440 PF00092 von Willebrand factor type A domain C2I28_08445 PF00069 Protein kinase domain C2I28_08450 PF11734 TilS substrate C-terminal domain C2I28_08450 PF09179 TilS substrate binding domain C2I28_08450 PF01171 PP-loop family C2I28_08455 PF00156 Phosphoribosyl transferase domain C2I28_08460 PF01434 Peptidase family M41 C2I28_08460 PF17862 AAA+ lid domain C2I28_08460 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_08460 PF06480 FtsH Extracellular C2I28_08465 PF03309 Type III pantothenate kinase C2I28_08470 PF01430 Hsp33 protein C2I28_08475 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_08480 PF04715 Anthranilate synthase component I, N terminal region C2I28_08480 PF00425 chorismate binding enzyme C2I28_08485 PF00117 Glutamine amidotransferase class-I C2I28_08490 PF01063 Amino-transferase class IV C2I28_08495 PF02152 Dihydroneopterin aldolase C2I28_08500 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C2I28_08505 PF00152 tRNA synthetases class II (D, K and N) C2I28_08505 PF01336 OB-fold nucleic acid binding domain C2I28_08525 PF05848 CtsR N-terminal HTH domain C2I28_08525 PF17727 CtsR C-terminal dimerization domain C2I28_08530 PF02151 UvrB/uvrC motif C2I28_08535 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain C2I28_08540 PF17871 AAA lid domain C2I28_08540 PF10431 C-terminal, D2-small domain, of ClpB protein C2I28_08540 PF02861 Clp amino terminal domain, pathogenicity island component C2I28_08540 PF07724 AAA domain (Cdc48 subfamily) C2I28_08540 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_08545 PF18073 Rubredoxin metal binding domain C2I28_08550 PF02457 DisA bacterial checkpoint controller nucleotide-binding C2I28_08550 PF10635 DisA bacterial checkpoint controller linker region C2I28_08560 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C2I28_08565 PF02542 YgbB family C2I28_08570 PF00749 tRNA synthetases class I (E and Q), catalytic domain C2I28_08575 PF06426 Serine acetyltransferase, N-terminal C2I28_08575 PF00132 Bacterial transferase hexapeptide (six repeats) C2I28_08580 PF01406 tRNA synthetases class I (C) catalytic domain C2I28_08580 PF09190 DALR domain C2I28_08585 PF00636 Ribonuclease III domain C2I28_08590 PF00588 SpoU rRNA Methylase family C2I28_08590 PF08032 RNA 2'-O ribose methyltransferase substrate binding C2I28_08595 PF05991 YacP-like NYN domain C2I28_08600 PF08281 Sigma-70, region 4 C2I28_08600 PF04542 Sigma-70 region 2 C2I28_08605 PF00471 Ribosomal protein L33 C2I28_08610 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C2I28_08615 PF02357 Transcription termination factor nusG C2I28_08615 PF00467 KOW motif C2I28_08620 PF03946 Ribosomal protein L11, N-terminal domain C2I28_08620 PF00298 Ribosomal protein L11, RNA binding domain C2I28_08625 PF00687 Ribosomal protein L1p/L10e family C2I28_08630 PF00466 Ribosomal protein L10 C2I28_08635 PF16320 Ribosomal protein L7/L12 dimerisation domain C2I28_08635 PF00542 Ribosomal protein L7/L12 C-terminal domain C2I28_08640 PF05175 Methyltransferase small domain C2I28_08645 PF04563 RNA polymerase beta subunit C2I28_08645 PF04561 RNA polymerase Rpb2, domain 2 C2I28_08645 PF10385 RNA polymerase beta subunit external 1 domain C2I28_08645 PF00562 RNA polymerase Rpb2, domain 6 C2I28_08645 PF04560 RNA polymerase Rpb2, domain 7 C2I28_08645 PF04565 RNA polymerase Rpb2, domain 3 C2I28_08650 PF04997 RNA polymerase Rpb1, domain 1 C2I28_08650 PF04983 RNA polymerase Rpb1, domain 3 C2I28_08650 PF05000 RNA polymerase Rpb1, domain 4 C2I28_08650 PF04998 RNA polymerase Rpb1, domain 5 C2I28_08650 PF00623 RNA polymerase Rpb1, domain 2 C2I28_08655 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family C2I28_08660 PF00164 Ribosomal protein S12/S23 C2I28_08665 PF00177 Ribosomal protein S7p/S5e C2I28_08670 PF03144 Elongation factor Tu domain 2 C2I28_08670 PF00009 Elongation factor Tu GTP binding domain C2I28_08670 PF03764 Elongation factor G, domain IV C2I28_08670 PF00679 Elongation factor G C-terminus C2I28_08670 PF14492 Elongation Factor G, domain II C2I28_08675 PF00009 Elongation factor Tu GTP binding domain C2I28_08675 PF03144 Elongation factor Tu domain 2 C2I28_08675 PF03143 Elongation factor Tu C-terminal domain C2I28_08680 PF00338 Ribosomal protein S10p/S20e C2I28_08685 PF00297 Ribosomal protein L3 C2I28_08690 PF00573 Ribosomal protein L4/L1 family C2I28_08695 PF00276 Ribosomal protein L23 C2I28_08700 PF03947 Ribosomal Proteins L2, C-terminal domain C2I28_08700 PF00181 Ribosomal Proteins L2, RNA binding domain C2I28_08705 PF00203 Ribosomal protein S19 C2I28_08710 PF00237 Ribosomal protein L22p/L17e C2I28_08715 PF07650 KH domain C2I28_08715 PF00189 Ribosomal protein S3, C-terminal domain C2I28_08720 PF00252 Ribosomal protein L16p/L10e C2I28_08725 PF00831 Ribosomal L29 protein C2I28_08730 PF00366 Ribosomal protein S17 C2I28_08735 PF00238 Ribosomal protein L14p/L23e C2I28_08740 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C2I28_08740 PF00467 KOW motif C2I28_08745 PF00673 ribosomal L5P family C-terminus C2I28_08745 PF00281 Ribosomal protein L5 C2I28_08750 PF00253 Ribosomal protein S14p/S29e C2I28_08755 PF00410 Ribosomal protein S8 C2I28_08760 PF00347 Ribosomal protein L6 C2I28_08765 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C2I28_08770 PF03719 Ribosomal protein S5, C-terminal domain C2I28_08770 PF00333 Ribosomal protein S5, N-terminal domain C2I28_08775 PF00327 Ribosomal protein L30p/L7e C2I28_08780 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C2I28_08785 PF00344 SecY translocase C2I28_08790 PF05191 Adenylate kinase, active site lid C2I28_08795 PF00557 Metallopeptidase family M24 C2I28_08800 PF01176 Translation initiation factor 1A / IF-1 C2I28_08805 PF00444 Ribosomal protein L36 C2I28_08810 PF00416 Ribosomal protein S13/S18 C2I28_08815 PF00411 Ribosomal protein S11 C2I28_08820 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C2I28_08820 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C2I28_08820 PF01000 RNA polymerase Rpb3/RpoA insert domain C2I28_08825 PF01196 Ribosomal protein L17 C2I28_08830 PF00005 ABC transporter C2I28_08835 PF00005 ABC transporter C2I28_08840 PF02361 Cobalt transport protein C2I28_08845 PF01416 tRNA pseudouridine synthase C2I28_08850 PF00572 Ribosomal protein L13 C2I28_08855 PF00380 Ribosomal protein S9/S16 C2I28_08865 PF01520 N-acetylmuramoyl-L-alanine amidase C2I28_08870 PF10609 NUBPL iron-transfer P-loop NTPase C2I28_08875 PF03466 LysR substrate binding domain C2I28_08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_08880 PF17898 Spore germination GerD central core domain C2I28_08885 PF14089 KinB-signalling pathway activation in sporulation C2I28_08890 PF01522 Polysaccharide deacetylase C2I28_08960 PF00491 Arginase family C2I28_08970 PF04542 Sigma-70 region 2 C2I28_08970 PF08281 Sigma-70, region 4 C2I28_08975 PF13490 Putative zinc-finger C2I28_08980 PF02457 DisA bacterial checkpoint controller nucleotide-binding C2I28_08990 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C2I28_08990 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C2I28_08990 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C2I28_08990 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C2I28_08995 PF01380 SIS domain C2I28_09005 PF01709 Transcriptional regulator C2I28_09010 PF01520 N-acetylmuramoyl-L-alanine amidase C2I28_09010 PF08239 Bacterial SH3 domain C2I28_09015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C2I28_09015 PF02378 Phosphotransferase system, EIIC C2I28_09015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C2I28_09020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C2I28_09020 PF05043 Mga helix-turn-helix domain C2I28_09020 PF00874 PRD domain C2I28_09020 PF08279 HTH domain C2I28_09020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C2I28_09025 PF01232 Mannitol dehydrogenase Rossmann domain C2I28_09025 PF08125 Mannitol dehydrogenase C-terminal domain C2I28_09035 PF03734 L,D-transpeptidase catalytic domain C2I28_09040 PF01741 Large-conductance mechanosensitive channel, MscL C2I28_09045 PF00884 Sulfatase C2I28_09055 PF08402 TOBE domain C2I28_09055 PF00005 ABC transporter C2I28_09060 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_09065 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_09070 PF13416 Bacterial extracellular solute-binding protein C2I28_09080 PF00486 Transcriptional regulatory protein, C terminal C2I28_09080 PF00072 Response regulator receiver domain C2I28_09085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_09085 PF00512 His Kinase A (phospho-acceptor) domain C2I28_09095 PF02424 ApbE family C2I28_09100 PF01794 Ferric reductase like transmembrane component C2I28_09100 PF04205 FMN-binding domain C2I28_09105 PF07478 D-ala D-ala ligase C-terminus C2I28_09105 PF01820 D-ala D-ala ligase N-terminus C2I28_09110 PF01225 Mur ligase family, catalytic domain C2I28_09110 PF02875 Mur ligase family, glutamate ligase domain C2I28_09110 PF08245 Mur ligase middle domain C2I28_09115 PF00270 DEAD/DEAH box helicase C2I28_09115 PF00271 Helicase conserved C-terminal domain C2I28_09120 PF03851 UV-endonuclease UvdE C2I28_09125 PF01694 Rhomboid family C2I28_09130 PF01648 4'-phosphopantetheinyl transferase superfamily C2I28_09140 PF00842 Alanine racemase, C-terminal domain C2I28_09140 PF01168 Alanine racemase, N-terminal domain C2I28_09145 PF01402 Ribbon-helix-helix protein, copG family C2I28_09150 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system C2I28_09155 PF01740 STAS domain C2I28_09155 PF08678 Rsbr N terminal C2I28_09160 PF01740 STAS domain C2I28_09165 PF13581 Histidine kinase-like ATPase domain C2I28_09170 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain C2I28_09170 PF07228 Stage II sporulation protein E (SpoIIE) C2I28_09175 PF01740 STAS domain C2I28_09180 PF13581 Histidine kinase-like ATPase domain C2I28_09185 PF04545 Sigma-70, region 4 C2I28_09185 PF04542 Sigma-70 region 2 C2I28_09185 PF04539 Sigma-70 region 3 C2I28_09190 PF07228 Stage II sporulation protein E (SpoIIE) C2I28_09195 PF00575 S1 RNA binding domain C2I28_09195 PF09371 Tex-like protein N-terminal domain C2I28_09195 PF16921 Tex protein YqgF-like domain C2I28_09195 PF17674 HHH domain C2I28_09205 PF10263 SprT-like family C2I28_09205 PF17283 SprT-like zinc ribbon domain C2I28_09290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C2I28_09295 PF00814 Glycoprotease family C2I28_09300 PF00583 Acetyltransferase (GNAT) family C2I28_09305 PF00814 Glycoprotease family C2I28_09310 PF00005 ABC transporter C2I28_09310 PF16326 ABC transporter C-terminal domain C2I28_09310 PF12848 ABC transporter C2I28_09315 PF02629 CoA binding domain C2I28_09315 PF06971 Putative DNA-binding protein N-terminus C2I28_09320 PF02416 mttA/Hcf106 family C2I28_09325 PF00902 Sec-independent protein translocase protein (TatC) C2I28_09335 PF02517 CPBP intramembrane metalloprotease C2I28_09340 PF00166 Chaperonin 10 Kd subunit C2I28_09345 PF00118 TCP-1/cpn60 chaperonin family C2I28_09350 PF07726 ATPase family associated with various cellular activities (AAA) C2I28_09350 PF17863 AAA lid domain C2I28_09360 PF13559 Domain of unknown function (DUF4129) C2I28_09360 PF01841 Transglutaminase-like superfamily C2I28_09360 PF11992 Domain of unknown function (DUF3488) C2I28_09365 PF00958 GMP synthase C terminal domain C2I28_09365 PF00117 Glutamine amidotransferase class-I C2I28_09365 PF02540 NAD synthase C2I28_09370 PF00860 Permease family C2I28_09420 PF14044 NETI protein C2I28_09425 PF00731 AIR carboxylase C2I28_09430 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C2I28_09430 PF02222 ATP-grasp domain C2I28_09435 PF10397 Adenylosuccinate lyase C-terminus C2I28_09435 PF00206 Lyase C2I28_09440 PF01259 SAICAR synthetase C2I28_09445 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase C2I28_09455 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C2I28_09455 PF00586 AIR synthase related protein, N-terminal domain C2I28_09455 PF02769 AIR synthase related protein, C-terminal domain C2I28_09460 PF00156 Phosphoribosyl transferase domain C2I28_09465 PF02769 AIR synthase related protein, C-terminal domain C2I28_09465 PF00586 AIR synthase related protein, N-terminal domain C2I28_09470 PF00551 Formyl transferase C2I28_09475 PF01808 AICARFT/IMPCHase bienzyme C2I28_09475 PF02142 MGS-like domain C2I28_09480 PF02843 Phosphoribosylglycinamide synthetase, C domain C2I28_09480 PF02844 Phosphoribosylglycinamide synthetase, N domain C2I28_09480 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C2I28_09490 PF01979 Amidohydrolase family C2I28_09490 PF13382 Adenine deaminase C-terminal domain C2I28_09495 PF01371 Trp repressor protein C2I28_09500 PF03129 Anticodon binding domain C2I28_09500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C2I28_09505 PF01884 PcrB family C2I28_09510 PF13361 UvrD-like helicase C-terminal domain C2I28_09510 PF00580 UvrD/REP helicase N-terminal domain C2I28_09515 PF00533 BRCA1 C Terminus (BRCT) domain C2I28_09515 PF01653 NAD-dependent DNA ligase adenylation domain C2I28_09515 PF03120 NAD-dependent DNA ligase OB-fold domain C2I28_09515 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C2I28_09515 PF12826 Helix-hairpin-helix motif C2I28_09520 PF07537 CamS sex pheromone cAM373 precursor C2I28_09530 PF02686 Glu-tRNAGln amidotransferase C subunit C2I28_09535 PF01425 Amidase C2I28_09540 PF02637 GatB domain C2I28_09540 PF02934 GatB/GatE catalytic domain C2I28_09545 PF00781 Diacylglycerol kinase catalytic domain C2I28_09550 PF05958 tRNA (Uracil-5-)-methyltransferase C2I28_09550 PF01938 TRAM domain C2I28_09550 PF02475 Met-10+ like-protein C2I28_09565 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_09565 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_09575 PF12728 Helix-turn-helix domain C2I28_09580 PF02608 ABC transporter substrate-binding protein PnrA-like C2I28_09585 PF00512 His Kinase A (phospho-acceptor) domain C2I28_09585 PF00989 PAS fold C2I28_09585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_09590 PF00557 Metallopeptidase family M24 C2I28_09595 PF10282 Lactonase, 7-bladed beta-propeller C2I28_09600 PF03060 Nitronate monooxygenase C2I28_09605 PF06445 GyrI-like small molecule binding domain C2I28_09605 PF13411 MerR HTH family regulatory protein C2I28_09610 PF07690 Major Facilitator Superfamily C2I28_09620 PF13539 D-alanyl-D-alanine carboxypeptidase C2I28_09625 PF00005 ABC transporter C2I28_09630 PF00497 Bacterial extracellular solute-binding proteins, family 3 C2I28_09635 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_09640 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_09645 PF00324 Amino acid permease C2I28_09650 PF04286 Protein of unknown function (DUF445) C2I28_09655 PF03413 Peptidase propeptide and YPEB domain C2I28_09660 PF03413 Peptidase propeptide and YPEB domain C2I28_09665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_09665 PF00512 His Kinase A (phospho-acceptor) domain C2I28_09665 PF00672 HAMP domain C2I28_09670 PF00072 Response regulator receiver domain C2I28_09670 PF00486 Transcriptional regulatory protein, C terminal C2I28_09675 PF00512 His Kinase A (phospho-acceptor) domain C2I28_09675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_09680 PF00072 Response regulator receiver domain C2I28_09680 PF00486 Transcriptional regulatory protein, C terminal C2I28_09685 PF04235 Protein of unknown function (DUF418) C2I28_09695 PF00005 ABC transporter C2I28_09700 PF01569 PAP2 superfamily C2I28_09705 PF02566 OsmC-like protein C2I28_09710 PF03824 High-affinity nickel-transport protein C2I28_09715 PF01546 Peptidase family M20/M25/M40 C2I28_09715 PF07687 Peptidase dimerisation domain C2I28_09720 PF07681 DoxX C2I28_09725 PF01965 DJ-1/PfpI family C2I28_09735 PF12867 DinB superfamily C2I28_09745 PF01235 Sodium:alanine symporter family C2I28_09750 PF06081 Aromatic acid exporter family member 1 C2I28_09760 PF02915 Rubrerythrin C2I28_09765 PF01544 CorA-like Mg2+ transporter protein C2I28_09770 PF00989 PAS fold C2I28_09770 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C2I28_09770 PF17203 Single cache domain 3 C2I28_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_09775 PF00072 Response regulator receiver domain C2I28_09790 PF00989 PAS fold C2I28_09790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_09790 PF08447 PAS fold C2I28_09790 PF00512 His Kinase A (phospho-acceptor) domain C2I28_09795 PF00270 DEAD/DEAH box helicase C2I28_09795 PF00271 Helicase conserved C-terminal domain C2I28_09805 PF14436 Bacterial EndoU nuclease C2I28_09805 PF04740 LXG domain of WXG superfamily C2I28_09815 PF06013 Proteins of 100 residues with WXG C2I28_09820 PF08817 WXG100 protein secretion system (Wss), protein YukD C2I28_09825 PF10140 WXG100 protein secretion system (Wss), protein YukC C2I28_09830 PF01580 FtsK/SpoIIIE family C2I28_09830 PF12538 DNA transporter C2I28_09840 PF17355 Family of unknown function (DUF5383) C2I28_09850 PF04231 Endonuclease I C2I28_09855 PF01373 Glycosyl hydrolase family 14 C2I28_09855 PF00686 Starch binding domain C2I28_09860 PF01625 Peptide methionine sulfoxide reductase C2I28_09875 PF12848 ABC transporter C2I28_09875 PF00005 ABC transporter C2I28_09880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C2I28_09885 PF02898 Nitric oxide synthase, oxygenase domain C2I28_09890 PF11121 Protein of unknown function (DUF2639) C2I28_09895 PF02082 Transcriptional regulator C2I28_09900 PF00175 Oxidoreductase NAD-binding domain C2I28_09900 PF00042 Globin C2I28_09900 PF00970 Oxidoreductase FAD-binding domain C2I28_09905 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) C2I28_09910 PF01965 DJ-1/PfpI family C2I28_09915 PF00188 Cysteine-rich secretory protein family C2I28_09920 PF13382 Adenine deaminase C-terminal domain C2I28_09920 PF01979 Amidohydrolase family C2I28_09925 PF06569 Protein of unknown function (DUF1128) C2I28_09930 PF01451 Low molecular weight phosphotyrosine protein phosphatase C2I28_09940 PF03631 Virulence factor BrkB C2I28_09955 PF01022 Bacterial regulatory protein, arsR family C2I28_09960 PF16916 Dimerisation domain of Zinc Transporter C2I28_09960 PF01545 Cation efflux family C2I28_09965 PF07690 Major Facilitator Superfamily C2I28_09975 PF05870 Phenolic acid decarboxylase (PAD) C2I28_09985 PF16242 Pyridoxamine 5'-phosphate oxidase like C2I28_09990 PF01699 Sodium/calcium exchanger protein C2I28_09995 PF14167 YfkD-like protein C2I28_10000 PF04055 Radical SAM superfamily C2I28_10000 PF08756 YfkB-like domain C2I28_10010 PF05681 Fumarate hydratase (Fumerase) C2I28_10010 PF05683 Fumarase C-terminus C2I28_10015 PF01522 Polysaccharide deacetylase C2I28_10020 PF05958 tRNA (Uracil-5-)-methyltransferase C2I28_10020 PF01938 TRAM domain C2I28_10030 PF00324 Amino acid permease C2I28_10035 PF00989 PAS fold C2I28_10035 PF00512 His Kinase A (phospho-acceptor) domain C2I28_10035 PF13188 PAS domain C2I28_10035 PF13426 PAS domain C2I28_10035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_10050 PF01979 Amidohydrolase family C2I28_10055 PF01370 NAD dependent epimerase/dehydratase family C2I28_10055 PF08338 Domain of unknown function (DUF1731) C2I28_10060 PF02631 RecX family C2I28_10065 PF00106 short chain dehydrogenase C2I28_10070 PF08838 Protein of unknown function (DUF1811) C2I28_10075 PF08176 Small acid-soluble spore protein K family C2I28_10085 PF04307 LexA-binding, inner membrane-associated putative hydrolase C2I28_10090 PF00730 HhH-GPD superfamily base excision DNA repair protein C2I28_10090 PF14815 NUDIX domain C2I28_10105 PF04259 Small, acid-soluble spore protein, gamma-type C2I28_10110 PF14182 YgaB-like protein C2I28_10115 PF04167 Protein of unknown function (DUF402) C2I28_10120 PF00005 ABC transporter C2I28_10120 PF00664 ABC transporter transmembrane region C2I28_10125 PF06081 Aromatic acid exporter family member 1 C2I28_10130 PF00202 Aminotransferase class-III C2I28_10135 PF00005 ABC transporter C2I28_10150 PF07885 Ion channel C2I28_10155 PF00578 AhpC/TSA family C2I28_10160 PF01475 Ferric uptake regulator family C2I28_10165 PF11023 Zinc-ribbon containing domain C2I28_10170 PF14540 Nucleotidyltransferase-like C2I28_10170 PF18576 Helix-turn-helix domain C2I28_10270 PF00589 Phage integrase family C2I28_10270 PF02899 Phage integrase, N-terminal SAM-like domain C2I28_10335 PF08331 Domain of unknown function (DUF1730) C2I28_10340 PF12671 Putative amidase domain C2I28_10345 PF00588 SpoU rRNA Methylase family C2I28_10350 PF08298 PrkA AAA domain C2I28_10350 PF06798 PrkA serine protein kinase C-terminal domain C2I28_10355 PF04285 Protein of unknown function (DUF444) C2I28_10365 PF01545 Cation efflux family C2I28_10365 PF16916 Dimerisation domain of Zinc Transporter C2I28_10370 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_10380 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_10395 PF13667 ThiC-associated domain C2I28_10395 PF01964 Radical SAM ThiC family C2I28_10405 PF02673 Bacitracin resistance protein BacA C2I28_10410 PF00375 Sodium:dicarboxylate symporter family C2I28_10415 PF01594 AI-2E family transporter C2I28_10420 PF09335 SNARE associated Golgi protein C2I28_10425 PF12787 EcsC protein family C2I28_10430 PF00324 Amino acid permease C2I28_10440 PF16875 Glycosyl hydrolase family 36 N-terminal domain C2I28_10440 PF16874 Glycosyl hydrolase family 36 C-terminal domain C2I28_10445 PF06968 Biotin and Thiamin Synthesis associated domain C2I28_10445 PF04055 Radical SAM superfamily C2I28_10450 PF04309 Glycerol-3-phosphate responsive antiterminator C2I28_10455 PF08402 TOBE domain C2I28_10455 PF00005 ABC transporter C2I28_10460 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_10465 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_10470 PF13416 Bacterial extracellular solute-binding protein C2I28_10475 PF03009 Glycerophosphoryl diester phosphodiesterase family C2I28_10490 PF13378 Enolase C-terminal domain-like C2I28_10490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C2I28_10495 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain C2I28_10495 PF00877 NlpC/P60 family C2I28_10530 PF10503 Esterase PHB depolymerase C2I28_10535 PF06725 3D domain C2I28_10535 PF01476 LysM domain C2I28_10540 PF02557 D-alanyl-D-alanine carboxypeptidase C2I28_10550 PF08239 Bacterial SH3 domain C2I28_10555 PF00583 Acetyltransferase (GNAT) family C2I28_10560 PF13396 Phospholipase_D-nuclease N-terminal C2I28_10560 PF13091 PLD-like domain C2I28_10575 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_10585 PF00356 Bacterial regulatory proteins, lacI family C2I28_10590 PF07690 Major Facilitator Superfamily C2I28_10595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C2I28_10595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C2I28_10600 PF00294 pfkB family carbohydrate kinase C2I28_10605 PF00171 Aldehyde dehydrogenase family C2I28_10610 PF00205 Thiamine pyrophosphate enzyme, central domain C2I28_10610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C2I28_10610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_10615 PF01261 Xylose isomerase-like TIM barrel C2I28_10620 PF00356 Bacterial regulatory proteins, lacI family C2I28_10625 PF04962 KduI/IolB family C2I28_10635 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_10635 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_10640 PF01037 Lrp/AsnC ligand binding domain C2I28_10670 PF01479 S4 domain C2I28_10670 PF00849 RNA pseudouridylate synthase C2I28_10680 PF14552 Tautomerase enzyme C2I28_10690 PF12327 FtsZ family, C-terminal domain C2I28_10690 PF00091 Tubulin/FtsZ family, GTPase domain C2I28_10695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C2I28_10705 PF10787 Uncharacterised protein from bacillus cereus group C2I28_10715 PF01026 TatD related DNase C2I28_10720 PF00892 EamA-like transporter family C2I28_10730 PF01594 AI-2E family transporter C2I28_10745 PF00107 Zinc-binding dehydrogenase C2I28_10745 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_10750 PF02652 L-lactate permease C2I28_10755 PF00056 lactate/malate dehydrogenase, NAD binding domain C2I28_10755 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C2I28_10760 PF16916 Dimerisation domain of Zinc Transporter C2I28_10760 PF01545 Cation efflux family C2I28_10765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C2I28_10765 PF00672 HAMP domain C2I28_10765 PF02743 Cache domain C2I28_10770 PF00849 RNA pseudouridylate synthase C2I28_10770 PF01479 S4 domain C2I28_10785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C2I28_10785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C2I28_10795 PF17969 L,D-transpeptidase C-terminal domain C2I28_10795 PF03734 L,D-transpeptidase catalytic domain C2I28_10800 PF00583 Acetyltransferase (GNAT) family C2I28_10800 PF00795 Carbon-nitrogen hydrolase C2I28_10805 PF04309 Glycerol-3-phosphate responsive antiterminator C2I28_10810 PF00230 Major intrinsic protein C2I28_10815 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C2I28_10815 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C2I28_10820 PF01266 FAD dependent oxidoreductase C2I28_10820 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C2I28_10825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C2I28_10825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C2I28_10825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C2I28_10825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C2I28_10830 PF02632 BioY family C2I28_10835 PF14148 YhdB-like protein C2I28_10840 PF04293 SpoVR like protein C2I28_10850 PF02082 Transcriptional regulator C2I28_10855 PF00107 Zinc-binding dehydrogenase C2I28_10855 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_10865 PF00005 ABC transporter C2I28_10870 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_10875 PF00497 Bacterial extracellular solute-binding proteins, family 3 C2I28_10880 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C2I28_10885 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C2I28_10895 PF02581 Thiamine monophosphate synthase C2I28_10900 PF01266 FAD dependent oxidoreductase C2I28_10910 PF05690 Thiazole biosynthesis protein ThiG C2I28_10915 PF00899 ThiF family C2I28_10920 PF08543 Phosphomethylpyrimidine kinase C2I28_10925 PF00300 Histidine phosphatase superfamily (branch 1) C2I28_10935 PF13460 NAD(P)H-binding C2I28_10940 PF01595 Cyclin M transmembrane N-terminal domain C2I28_10940 PF03471 Transporter associated domain C2I28_10940 PF00571 CBS domain C2I28_10945 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_10955 PF00005 ABC transporter C2I28_10955 PF17912 MalK OB fold domain C2I28_10955 PF03459 TOBE domain C2I28_10960 PF13556 PucR C-terminal helix-turn-helix domain C2I28_10975 PF14398 YheC/D like ATP-grasp C2I28_10980 PF14398 YheC/D like ATP-grasp C2I28_10990 PF06133 Control of competence regulator ComK, YlbF/YmcA C2I28_11000 PF04055 Radical SAM superfamily C2I28_11005 PF00501 AMP-binding enzyme C2I28_11005 PF13193 AMP-binding enzyme C-terminal domain C2I28_11010 PF00378 Enoyl-CoA hydratase/isomerase C2I28_11015 PF00216 Bacterial DNA-binding protein C2I28_11025 PF13732 Domain of unknown function (DUF4162) C2I28_11025 PF00005 ABC transporter C2I28_11040 PF01336 OB-fold nucleic acid binding domain C2I28_11040 PF01966 HD domain C2I28_11045 PF14147 Sporulation protein YhaL C2I28_11050 PF05698 Bacterial trigger factor protein (TF) C-terminus C2I28_11075 PF01047 MarR family C2I28_11085 PF17099 Tryptophan transporter TrpP C2I28_11090 PF00266 Aminotransferase class-V C2I28_11095 PF10400 Virulence activator alpha C-term C2I28_11095 PF03551 Transcriptional regulator PadR-like family C2I28_11100 PF13673 Acetyltransferase (GNAT) domain C2I28_11105 PF01757 Acyltransferase family C2I28_11110 PF01230 HIT domain C2I28_11115 PF00005 ABC transporter C2I28_11120 PF05975 Bacterial ABC transporter protein EcsB C2I28_11125 PF12787 EcsC protein family C2I28_11130 PF01546 Peptidase family M20/M25/M40 C2I28_11130 PF07687 Peptidase dimerisation domain C2I28_11135 PF01569 PAP2 superfamily C2I28_11145 PF03992 Antibiotic biosynthesis monooxygenase C2I28_11150 PF00912 Transglycosylase C2I28_11150 PF00905 Penicillin binding protein transpeptidase domain C2I28_11155 PF01208 Uroporphyrinogen decarboxylase (URO-D) C2I28_11160 PF00762 Ferrochelatase C2I28_11165 PF01593 Flavin containing amine oxidoreductase C2I28_11170 PF17932 Tetracyclin repressor-like, C-terminal domain C2I28_11170 PF00440 Bacterial regulatory proteins, tetR family C2I28_11175 PF03717 Penicillin-binding Protein dimerisation domain C2I28_11175 PF00905 Penicillin binding protein transpeptidase domain C2I28_11180 PF01547 Bacterial extracellular solute-binding protein C2I28_11185 PF06580 Histidine kinase C2I28_11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_11185 PF00672 HAMP domain C2I28_11185 PF02743 Cache domain C2I28_11190 PF00072 Response regulator receiver domain C2I28_11190 PF12833 Helix-turn-helix domain C2I28_11200 PF12706 Beta-lactamase superfamily domain C2I28_11205 PF10437 Bacterial lipoate protein ligase C-terminus C2I28_11205 PF03099 Biotin/lipoate A/B protein ligase family C2I28_11210 PF00501 AMP-binding enzyme C2I28_11210 PF13193 AMP-binding enzyme C-terminal domain C2I28_11215 PF00378 Enoyl-CoA hydratase/isomerase C2I28_11330 PF16491 CAAX prenyl protease N-terminal, five membrane helices C2I28_11330 PF01435 Peptidase family M48 C2I28_11335 PF00463 Isocitrate lyase family C2I28_11340 PF08858 IDEAL domain C2I28_11345 PF07676 WD40-like Beta Propeller Repeat C2I28_11345 PF00326 Prolyl oligopeptidase family C2I28_11350 PF09335 SNARE associated Golgi protein C2I28_11360 PF12705 PD-(D/E)XK nuclease superfamily C2I28_11365 PF13361 UvrD-like helicase C-terminal domain C2I28_11365 PF12705 PD-(D/E)XK nuclease superfamily C2I28_11365 PF00580 UvrD/REP helicase N-terminal domain C2I28_11370 PF00149 Calcineurin-like phosphoesterase C2I28_11370 PF12320 Type 5 capsule protein repressor C-terminal domain C2I28_11375 PF13476 AAA domain C2I28_11385 PF10676 Spore germination protein gerPA/gerPF C2I28_11400 PF10737 Spore germination protein GerPC C2I28_11405 PF10803 Spore germination GerPB C2I28_11410 PF10676 Spore germination protein gerPA/gerPF C2I28_11415 PF04235 Protein of unknown function (DUF418) C2I28_11420 PF07457 Protein of unknown function (DUF1516) C2I28_11430 PF13537 Glutamine amidotransferase domain C2I28_11430 PF00733 Asparagine synthase C2I28_11435 PF01593 Flavin containing amine oxidoreductase C2I28_11440 PF01593 Flavin containing amine oxidoreductase C2I28_11450 PF00543 Nitrogen regulatory protein P-II C2I28_11455 PF00909 Ammonium Transporter Family C2I28_11460 PF01373 Glycosyl hydrolase family 14 C2I28_11460 PF03423 Carbohydrate binding domain (family 25) C2I28_11460 PF00128 Alpha amylase, catalytic domain C2I28_11465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C2I28_11465 PF00356 Bacterial regulatory proteins, lacI family C2I28_11470 PF00171 Aldehyde dehydrogenase family C2I28_11475 PF00202 Aminotransferase class-III C2I28_11480 PF01546 Peptidase family M20/M25/M40 C2I28_11485 PF00324 Amino acid permease C2I28_11490 PF02954 Bacterial regulatory protein, Fis family C2I28_11490 PF13426 PAS domain C2I28_11490 PF00158 Sigma-54 interaction domain C2I28_11500 PF04461 Protein of unknown function (DUF520) C2I28_11505 PF13509 S1 domain C2I28_11505 PF17783 CvfB-like winged helix domain C2I28_11515 PF02645 Uncharacterised protein, DegV family COG1307 C2I28_11520 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_11520 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_11535 PF01883 Iron-sulfur cluster assembly protein C2I28_11540 PF00027 Cyclic nucleotide-binding domain C2I28_11540 PF00325 Bacterial regulatory proteins, crp family C2I28_11545 PF01118 Semialdehyde dehydrogenase, NAD binding domain C2I28_11545 PF02774 Semialdehyde dehydrogenase, dimerisation domain C2I28_11550 PF01960 ArgJ family C2I28_11555 PF00696 Amino acid kinase family C2I28_11560 PF00202 Aminotransferase class-III C2I28_11565 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C2I28_11565 PF00117 Glutamine amidotransferase class-I C2I28_11570 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C2I28_11570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C2I28_11575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C2I28_11575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C2I28_11585 PF14168 YjzC-like protein C2I28_11590 PF07724 AAA domain (Cdc48 subfamily) C2I28_11590 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_11590 PF02861 Clp amino terminal domain, pathogenicity island component C2I28_11590 PF10431 C-terminal, D2-small domain, of ClpB protein C2I28_11590 PF17871 AAA lid domain C2I28_11600 PF12833 Helix-turn-helix domain C2I28_11605 PF08544 GHMP kinases C terminal C2I28_11605 PF00288 GHMP kinases N terminal domain C2I28_11605 PF10509 Galactokinase galactose-binding signature C2I28_11610 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain C2I28_11610 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain C2I28_11615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C2I28_11615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C2I28_11635 PF10815 ComZ C2I28_11645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C2I28_11645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C2I28_11650 PF02801 Beta-ketoacyl synthase, C-terminal domain C2I28_11650 PF00109 Beta-ketoacyl synthase, N-terminal domain C2I28_11655 PF10026 Predicted Zn-dependent protease (DUF2268) C2I28_11660 PF00005 ABC transporter C2I28_11660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_11665 PF00005 ABC transporter C2I28_11665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_11670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C2I28_11675 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_11680 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_11685 PF12227 Protein of unknown function (DUF3603) C2I28_11690 PF00579 tRNA synthetases class I (W and Y) C2I28_11700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C2I28_11705 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_11710 PF12911 N-terminal TM domain of oligopeptide transport permease C C2I28_11710 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_11715 PF00005 ABC transporter C2I28_11715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_11720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_11720 PF00005 ABC transporter C2I28_11725 PF13508 Acetyltransferase (GNAT) domain C2I28_11730 PF00324 Amino acid permease C2I28_11735 PF13520 Amino acid permease C2I28_11740 PF03960 ArsC family C2I28_11745 PF03466 LysR substrate binding domain C2I28_11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_11760 PF03741 Integral membrane protein TerC family C2I28_11765 PF05389 Negative regulator of genetic competence (MecA) C2I28_11770 PF13091 PLD-like domain C2I28_11770 PF13396 Phospholipase_D-nuclease N-terminal C2I28_11780 PF08439 Oligopeptidase F C2I28_11780 PF01432 Peptidase family M3 C2I28_11795 PF01152 Bacterial-like globin C2I28_11800 PF01464 Transglycosylase SLT domain C2I28_11805 PF01928 CYTH domain C2I28_11815 PF04607 Region found in RelA / SpoT proteins C2I28_11820 PF01513 ATP-NAD kinase C2I28_11825 PF00849 RNA pseudouridylate synthase C2I28_11830 PF00149 Calcineurin-like phosphoesterase C2I28_11835 PF01769 Divalent cation transporter C2I28_11835 PF03448 MgtE intracellular N domain C2I28_11835 PF00571 CBS domain C2I28_11840 PF02254 TrkA-N domain C2I28_11840 PF02080 TrkA-C domain C2I28_11840 PF00999 Sodium/hydrogen exchanger family C2I28_11850 PF07098 Protein of unknown function (DUF1360) C2I28_11880 PF14069 Stage VI sporulation protein F C2I28_11890 PF13361 UvrD-like helicase C-terminal domain C2I28_11890 PF00580 UvrD/REP helicase N-terminal domain C2I28_11900 PF04239 Protein of unknown function (DUF421) C2I28_11905 PF13673 Acetyltransferase (GNAT) domain C2I28_11915 PF00756 Putative esterase C2I28_11930 PF04608 Phosphatidylglycerophosphatase A C2I28_11940 PF01380 SIS domain C2I28_11940 PF01418 Helix-turn-helix domain, rpiR family C2I28_11945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C2I28_11945 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain C2I28_11950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C2I28_11950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C2I28_11955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin C2I28_11960 PF02447 GntP family permease C2I28_11975 PF01037 Lrp/AsnC ligand binding domain C2I28_11980 PF00797 N-acetyltransferase C2I28_12000 PF00270 DEAD/DEAH box helicase C2I28_12000 PF00271 Helicase conserved C-terminal domain C2I28_12000 PF03880 DbpA RNA binding domain C2I28_12005 PF03932 CutC family C2I28_12010 PF00324 Amino acid permease C2I28_12020 PF00753 Metallo-beta-lactamase superfamily C2I28_12025 PF13305 Tetracyclin repressor-like, C-terminal domain C2I28_12025 PF00440 Bacterial regulatory proteins, tetR family C2I28_12030 PF00874 PRD domain C2I28_12030 PF05043 Mga helix-turn-helix domain C2I28_12030 PF08279 HTH domain C2I28_12030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C2I28_12035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C2I28_12040 PF02378 Phosphotransferase system, EIIC C2I28_12045 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit C2I28_12050 PF11975 Family 4 glycosyl hydrolase C-terminal domain C2I28_12050 PF02056 Family 4 glycosyl hydrolase C2I28_12055 PF00158 Sigma-54 interaction domain C2I28_12055 PF00072 Response regulator receiver domain C2I28_12055 PF02954 Bacterial regulatory protein, Fis family C2I28_12065 PF01425 Amidase C2I28_12070 PF06580 Histidine kinase C2I28_12070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_12070 PF07694 5TMR of 5TMR-LYT C2I28_12070 PF13492 GAF domain C2I28_12075 PF00072 Response regulator receiver domain C2I28_12075 PF04397 LytTr DNA-binding domain C2I28_12080 PF03788 LrgA family C2I28_12085 PF04172 LrgB-like family C2I28_12100 PF18267 Rubredoxin NAD+ reductase C-terminal domain C2I28_12100 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C2I28_12100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C2I28_12100 PF04324 BFD-like [2Fe-2S] binding domain C2I28_12100 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_12105 PF01568 Molydopterin dinucleotide binding domain C2I28_12105 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C2I28_12105 PF00384 Molybdopterin oxidoreductase C2I28_12110 PF07690 Major Facilitator Superfamily C2I28_12115 PF03306 Alpha-acetolactate decarboxylase C2I28_12120 PF00205 Thiamine pyrophosphate enzyme, central domain C2I28_12120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_12120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C2I28_12130 PF09962 Uncharacterized conserved protein (DUF2196) C2I28_12140 PF01638 HxlR-like helix-turn-helix C2I28_12145 PF07690 Major Facilitator Superfamily C2I28_12150 PF00296 Luciferase-like monooxygenase C2I28_12155 PF00698 Acyl transferase domain C2I28_12155 PF16197 Ketoacyl-synthetase C-terminal extension C2I28_12155 PF00109 Beta-ketoacyl synthase, N-terminal domain C2I28_12155 PF02801 Beta-ketoacyl synthase, C-terminal domain C2I28_12155 PF08659 KR domain C2I28_12155 PF00550 Phosphopantetheine attachment site C2I28_12160 PF16957 Malonate decarboxylase, alpha subunit, transporter C2I28_12165 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase C2I28_12170 PF06857 Malonate decarboxylase delta subunit (MdcD) C2I28_12175 PF01039 Carboxyl transferase domain C2I28_12180 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG C2I28_12185 PF08664 YcbB domain C2I28_12185 PF00072 Response regulator receiver domain C2I28_12190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_12195 PF04960 Glutaminase C2I28_12200 PF01235 Sodium:alanine symporter family C2I28_12205 PF00474 Sodium:solute symporter family C2I28_12220 PF13520 Amino acid permease C2I28_12230 PF03061 Thioesterase superfamily C2I28_12240 PF00311 Phosphoenolpyruvate carboxylase C2I28_12250 PF00355 Rieske [2Fe-2S] domain C2I28_12255 PF03649 Uncharacterised protein family (UPF0014) C2I28_12260 PF00005 ABC transporter C2I28_12265 PF01053 Cys/Met metabolism PLP-dependent enzyme C2I28_12270 PF04893 Yip1 domain C2I28_12275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C2I28_12280 PF00005 ABC transporter C2I28_12285 PF12704 MacB-like periplasmic core domain C2I28_12285 PF02687 FtsX-like permease family C2I28_12290 PF00082 Subtilase family C2I28_12295 PF00809 Pterin binding enzyme C2I28_12310 PF07662 Na+ dependent nucleoside transporter C-terminus C2I28_12310 PF01773 Na+ dependent nucleoside transporter N-terminus C2I28_12315 PF00324 Amino acid permease C2I28_12320 PF02632 BioY family C2I28_12330 PF00202 Aminotransferase class-III C2I28_12340 PF03741 Integral membrane protein TerC family C2I28_12345 PF00375 Sodium:dicarboxylate symporter family C2I28_12350 PF03480 Bacterial extracellular solute-binding protein, family 7 C2I28_12355 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C2I28_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_12355 PF17203 Single cache domain 3 C2I28_12360 PF00072 Response regulator receiver domain C2I28_12360 PF04703 FaeA-like protein C2I28_12365 PF06800 Sugar transport protein C2I28_12395 PF01381 Helix-turn-helix C2I28_12405 PF00884 Sulfatase C2I28_12420 PF00155 Aminotransferase class I and II C2I28_12420 PF00392 Bacterial regulatory proteins, gntR family C2I28_12425 PF02574 Homocysteine S-methyltransferase C2I28_12430 PF01557 Fumarylacetoacetate (FAA) hydrolase family C2I28_12445 PF03600 Citrate transporter C2I28_12450 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C2I28_12450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_12455 PF12431 Transcriptional regulator C2I28_12455 PF08279 HTH domain C2I28_12455 PF00072 Response regulator receiver domain C2I28_12460 PF03401 Tripartite tricarboxylate transporter family receptor C2I28_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_12465 PF03466 LysR substrate binding domain C2I28_12470 PF05145 Transition state regulatory protein AbrB C2I28_12475 PF08241 Methyltransferase domain C2I28_12480 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_12485 PF00005 ABC transporter C2I28_12485 PF00571 CBS domain C2I28_12490 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C2I28_12495 PF00440 Bacterial regulatory proteins, tetR family C2I28_12495 PF17934 Tetracyclin repressor-like, C-terminal domain C2I28_12500 PF00171 Aldehyde dehydrogenase family C2I28_12505 PF00202 Aminotransferase class-III C2I28_12510 PF00491 Arginase family C2I28_12515 PF00324 Amino acid permease C2I28_12520 PF13419 Haloacid dehalogenase-like hydrolase C2I28_12525 PF00296 Luciferase-like monooxygenase C2I28_12530 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C2I28_12530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_12535 PF00296 Luciferase-like monooxygenase C2I28_12540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_12540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C2I28_12545 PF01497 Periplasmic binding protein C2I28_12550 PF01032 FecCD transport family C2I28_12555 PF01032 FecCD transport family C2I28_12565 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C2I28_12565 PF06827 Zinc finger found in FPG and IleRS C2I28_12565 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C2I28_12580 PF01380 SIS domain C2I28_12585 PF01380 SIS domain C2I28_12585 PF01418 Helix-turn-helix domain, rpiR family C2I28_12590 PF00367 phosphotransferase system, EIIB C2I28_12590 PF02378 Phosphotransferase system, EIIC C2I28_12600 PF07687 Peptidase dimerisation domain C2I28_12600 PF01546 Peptidase family M20/M25/M40 C2I28_12605 PF03070 TENA/THI-4/PQQC family C2I28_12610 PF00005 ABC transporter C2I28_12615 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_12620 PF09084 NMT1/THI5 like C2I28_12630 PF01380 SIS domain C2I28_12635 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C2I28_12640 PF01638 HxlR-like helix-turn-helix C2I28_12660 PF07664 Ferrous iron transport protein B C terminus C2I28_12660 PF17910 FeoB cytosolic helical domain C2I28_12660 PF02421 Ferrous iron transport protein B C2I28_12660 PF07670 Nucleoside recognition C2I28_12685 PF04963 Sigma-54 factor, core binding domain C2I28_12685 PF00309 Sigma-54 factor, Activator interacting domain (AID) C2I28_12685 PF04552 Sigma-54, DNA binding domain C2I28_12690 PF01638 HxlR-like helix-turn-helix C2I28_12695 PF08659 KR domain C2I28_12695 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_12695 PF14765 Polyketide synthase dehydratase C2I28_12695 PF00550 Phosphopantetheine attachment site C2I28_12695 PF00698 Acyl transferase domain C2I28_12700 PF00664 ABC transporter transmembrane region C2I28_12700 PF00005 ABC transporter C2I28_12705 PF00664 ABC transporter transmembrane region C2I28_12705 PF00005 ABC transporter C2I28_12715 PF00474 Sodium:solute symporter family C2I28_12720 PF04341 Protein of unknown function, DUF485 C2I28_12730 PF01614 Bacterial transcriptional regulator C2I28_12730 PF09339 IclR helix-turn-helix domain C2I28_12735 PF00248 Aldo/keto reductase family C2I28_12740 PF00106 short chain dehydrogenase C2I28_12745 PF01238 Phosphomannose isomerase type I C2I28_12750 PF01074 Glycosyl hydrolases family 38 N-terminal domain C2I28_12750 PF09261 Alpha mannosidase middle domain C2I28_12750 PF07748 Glycosyl hydrolases family 38 C-terminal domain C2I28_12755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C2I28_12755 PF02378 Phosphotransferase system, EIIC C2I28_12755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C2I28_12760 PF01380 SIS domain C2I28_12760 PF01418 Helix-turn-helix domain, rpiR family C2I28_12765 PF01047 MarR family C2I28_12775 PF07690 Major Facilitator Superfamily C2I28_12780 PF03358 NADPH-dependent FMN reductase C2I28_12795 PF00356 Bacterial regulatory proteins, lacI family C2I28_12800 PF00294 pfkB family carbohydrate kinase C2I28_12805 PF05025 RbsD / FucU transport protein family C2I28_12810 PF00005 ABC transporter C2I28_12815 PF02653 Branched-chain amino acid transport system / permease component C2I28_12820 PF13407 Periplasmic binding protein domain C2I28_12825 PF01476 LysM domain C2I28_12825 PF06725 3D domain C2I28_12830 PF01613 Flavin reductase like domain C2I28_12835 PF01547 Bacterial extracellular solute-binding protein C2I28_12840 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_12845 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_12860 PF00990 Diguanylate cyclase, GGDEF domain C2I28_12860 PF00072 Response regulator receiver domain C2I28_12870 PF00535 Glycosyl transferase family 2 C2I28_12880 PF00486 Transcriptional regulatory protein, C terminal C2I28_12880 PF00072 Response regulator receiver domain C2I28_12885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_12885 PF00512 His Kinase A (phospho-acceptor) domain C2I28_12885 PF13426 PAS domain C2I28_12885 PF00672 HAMP domain C2I28_12890 PF09350 Domain of unknown function (DUF1992) C2I28_12895 PF12697 Alpha/beta hydrolase family C2I28_12900 PF00300 Histidine phosphatase superfamily (branch 1) C2I28_12910 PF00202 Aminotransferase class-III C2I28_12925 PF01979 Amidohydrolase family C2I28_12930 PF00860 Permease family C2I28_12935 PF01202 Shikimate kinase C2I28_12945 PF00367 phosphotransferase system, EIIB C2I28_12945 PF02378 Phosphotransferase system, EIIC C2I28_12950 PF16657 Maltogenic Amylase, C-terminal domain C2I28_12950 PF00128 Alpha amylase, catalytic domain C2I28_12955 PF00392 Bacterial regulatory proteins, gntR family C2I28_12955 PF07702 UTRA domain C2I28_12960 PF02682 Carboxyltransferase domain, subdomain C and D C2I28_12965 PF02626 Carboxyltransferase domain, subdomain A and B C2I28_12970 PF03746 LamB/YcsF family C2I28_12975 PF01566 Natural resistance-associated macrophage protein C2I28_12980 PF03006 Haemolysin-III related C2I28_12995 PF00881 Nitroreductase family C2I28_13000 PF01594 AI-2E family transporter C2I28_13010 PF00107 Zinc-binding dehydrogenase C2I28_13010 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_13020 PF01425 Amidase C2I28_13025 PF00289 Biotin carboxylase, N-terminal domain C2I28_13025 PF02785 Biotin carboxylase C-terminal domain C2I28_13025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C2I28_13040 PF00324 Amino acid permease C2I28_13045 PF07969 Amidohydrolase family C2I28_13055 PF00005 ABC transporter C2I28_13060 PF00313 'Cold-shock' DNA-binding domain C2I28_13065 PF13460 NAD(P)H-binding C2I28_13070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C2I28_13070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C2I28_13075 PF00578 AhpC/TSA family C2I28_13075 PF10417 C-terminal domain of 1-Cys peroxiredoxin C2I28_13080 PF00578 AhpC/TSA family C2I28_13100 PF00990 Diguanylate cyclase, GGDEF domain C2I28_13100 PF00563 EAL domain C2I28_13100 PF01590 GAF domain C2I28_13100 PF00360 Phytochrome region C2I28_13105 PF02416 mttA/Hcf106 family C2I28_13110 PF00893 Small Multidrug Resistance protein C2I28_13115 PF00893 Small Multidrug Resistance protein C2I28_13130 PF08245 Mur ligase middle domain C2I28_13135 PF14102 Capsule biosynthesis CapC C2I28_13140 PF09587 Bacterial capsule synthesis protein PGA_cap C2I28_13170 PF13419 Haloacid dehalogenase-like hydrolase C2I28_13185 PF02638 Glycosyl hydrolase-like 10 C2I28_13190 PF01380 SIS domain C2I28_13190 PF01418 Helix-turn-helix domain, rpiR family C2I28_13200 PF02378 Phosphotransferase system, EIIC C2I28_13210 PF02056 Family 4 glycosyl hydrolase C2I28_13210 PF11975 Family 4 glycosyl hydrolase C-terminal domain C2I28_13215 PF03702 Anhydro-N-acetylmuramic acid kinase C2I28_13220 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit C2I28_13230 PF01869 BadF/BadG/BcrA/BcrD ATPase family C2I28_13235 PF01380 SIS domain C2I28_13250 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C2I28_13265 PF03734 L,D-transpeptidase catalytic domain C2I28_13275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_13275 PF03466 LysR substrate binding domain C2I28_13285 PF00248 Aldo/keto reductase family C2I28_13295 PF04239 Protein of unknown function (DUF421) C2I28_13305 PF01425 Amidase C2I28_13315 PF16363 GDP-mannose 4,6 dehydratase C2I28_13365 PF17154 Gammaproteobacterial periplasmic sensor domain C2I28_13365 PF00563 EAL domain C2I28_13365 PF00990 Diguanylate cyclase, GGDEF domain C2I28_13365 PF00672 HAMP domain C2I28_13370 PF00990 Diguanylate cyclase, GGDEF domain C2I28_13370 PF00563 EAL domain C2I28_13370 PF03707 Bacterial signalling protein N terminal repeat C2I28_13375 PF01638 HxlR-like helix-turn-helix C2I28_13380 PF06800 Sugar transport protein C2I28_13390 PF01758 Sodium Bile acid symporter family C2I28_13395 PF11755 Protein of unknown function (DUF3311) C2I28_13400 PF00474 Sodium:solute symporter family C2I28_13410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_13415 PF08664 YcbB domain C2I28_13415 PF00072 Response regulator receiver domain C2I28_13420 PF00375 Sodium:dicarboxylate symporter family C2I28_13435 PF01476 LysM domain C2I28_13435 PF00877 NlpC/P60 family C2I28_13450 PF00248 Aldo/keto reductase family C2I28_13460 PF08864 UPF0302 domain C2I28_13460 PF08858 IDEAL domain C2I28_13465 PF02040 Arsenical pump membrane protein C2I28_13470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C2I28_13470 PF13378 Enolase C-terminal domain-like C2I28_13485 PF00158 Sigma-54 interaction domain C2I28_13490 PF00202 Aminotransferase class-III C2I28_13500 PF07690 Major Facilitator Superfamily C2I28_13505 PF00873 AcrB/AcrD/AcrF family C2I28_13515 PF01022 Bacterial regulatory protein, arsR family C2I28_13520 PF07853 Protein of unknown function (DUF1648) C2I28_13520 PF13630 SdpI/YhfL protein family C2I28_13550 PF03707 Bacterial signalling protein N terminal repeat C2I28_13550 PF00990 Diguanylate cyclase, GGDEF domain C2I28_13550 PF00563 EAL domain C2I28_13555 PF01227 GTP cyclohydrolase I C2I28_13560 PF13192 Thioredoxin domain C2I28_13560 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_13570 PF00563 EAL domain C2I28_13570 PF03707 Bacterial signalling protein N terminal repeat C2I28_13570 PF00990 Diguanylate cyclase, GGDEF domain C2I28_13580 PF00700 Bacterial flagellin C-terminal helical region C2I28_13580 PF00669 Bacterial flagellin N-terminal helical region C2I28_13585 PF01470 Pyroglutamyl peptidase C2I28_13625 PF08671 Anti-repressor SinI C2I28_13625 PF01381 Helix-turn-helix C2I28_13630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C2I28_13630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C2I28_13630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C2I28_13630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C2I28_13645 PF08486 Stage II sporulation protein C2I28_13645 PF04122 Putative cell wall binding repeat 2 C2I28_13660 PF00483 Nucleotidyl transferase C2I28_13665 PF02397 Bacterial sugar transferase C2I28_13675 PF05159 Capsule polysaccharide biosynthesis protein C2I28_13680 PF00862 Sucrose synthase C2I28_13680 PF00534 Glycosyl transferases group 1 C2I28_13690 PF02348 Cytidylyltransferase C2I28_13695 PF00793 DAHP synthetase I family C2I28_13700 PF00571 CBS domain C2I28_13700 PF01380 SIS domain C2I28_13715 PF01050 Mannose-6-phosphate isomerase C2I28_13715 PF00483 Nucleotidyl transferase C2I28_13720 PF01238 Phosphomannose isomerase type I C2I28_13725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C2I28_13725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C2I28_13725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C2I28_13725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C2I28_13730 PF02706 Chain length determinant protein C2I28_13730 PF13807 G-rich domain on putative tyrosine kinase C2I28_13735 PF13614 AAA domain C2I28_13740 PF00483 Nucleotidyl transferase C2I28_13755 PF00535 Glycosyl transferase family 2 C2I28_13755 PF01501 Glycosyl transferase family 8 C2I28_13760 PF00535 Glycosyl transferase family 2 C2I28_13760 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 C2I28_13765 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase C2I28_13765 PF00535 Glycosyl transferase family 2 C2I28_13770 PF01061 ABC-2 type transporter C2I28_13775 PF00005 ABC transporter C2I28_13775 PF08239 Bacterial SH3 domain C2I28_13785 PF03816 Cell envelope-related transcriptional attenuator domain C2I28_13805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_13805 PF00205 Thiamine pyrophosphate enzyme, central domain C2I28_13805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C2I28_13810 PF01645 Conserved region in glutamate synthase C2I28_13820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C2I28_13820 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C2I28_13830 PF02447 GntP family permease C2I28_13850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C2I28_13850 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_13850 PF18267 Rubredoxin NAD+ reductase C-terminal domain C2I28_13850 PF04324 BFD-like [2Fe-2S] binding domain C2I28_13850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C2I28_13855 PF00355 Rieske [2Fe-2S] domain C2I28_13860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_13865 PF01226 Formate/nitrite transporter C2I28_13875 PF00294 pfkB family carbohydrate kinase C2I28_13880 PF06800 Sugar transport protein C2I28_13895 PF01554 MatE C2I28_13910 PF03816 Cell envelope-related transcriptional attenuator domain C2I28_13920 PF01544 CorA-like Mg2+ transporter protein C2I28_13925 PF17936 Bacterial Ig domain C2I28_13925 PF00082 Subtilase family C2I28_13945 PF13580 SIS domain C2I28_13950 PF07702 UTRA domain C2I28_13950 PF00392 Bacterial regulatory proteins, gntR family C2I28_13955 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase C2I28_13960 PF01979 Amidohydrolase family C2I28_13965 PF02378 Phosphotransferase system, EIIC C2I28_13965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C2I28_13965 PF00367 phosphotransferase system, EIIB C2I28_13970 PF04474 Protein of unknown function (DUF554) C2I28_14005 PF00005 ABC transporter C2I28_14010 PF01595 Cyclin M transmembrane N-terminal domain C2I28_14010 PF03471 Transporter associated domain C2I28_14010 PF00571 CBS domain C2I28_14015 PF13411 MerR HTH family regulatory protein C2I28_14025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_14030 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like C2I28_14045 PF10502 Signal peptidase, peptidase S26 C2I28_14060 PF17202 Single cache domain 3 C2I28_14060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C2I28_14060 PF00672 HAMP domain C2I28_14065 PF00583 Acetyltransferase (GNAT) family C2I28_14070 PF01546 Peptidase family M20/M25/M40 C2I28_14070 PF07687 Peptidase dimerisation domain C2I28_14080 PF01546 Peptidase family M20/M25/M40 C2I28_14095 PF04229 GrpB protein C2I28_14095 PF13673 Acetyltransferase (GNAT) domain C2I28_14100 PF07690 Major Facilitator Superfamily C2I28_14110 PF00860 Permease family C2I28_14120 PF00072 Response regulator receiver domain C2I28_14120 PF04397 LytTr DNA-binding domain C2I28_14125 PF00005 ABC transporter C2I28_14130 PF12679 ABC-2 family transporter protein C2I28_14140 PF13411 MerR HTH family regulatory protein C2I28_14145 PF01047 MarR family C2I28_14150 PF01625 Peptide methionine sulfoxide reductase C2I28_14150 PF01641 SelR domain C2I28_14155 PF03845 Spore germination protein C2I28_14160 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_14165 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_14170 PF00245 Alkaline phosphatase C2I28_14175 PF04397 LytTr DNA-binding domain C2I28_14175 PF00072 Response regulator receiver domain C2I28_14180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_14180 PF00512 His Kinase A (phospho-acceptor) domain C2I28_14180 PF09308 LuxQ, periplasmic C2I28_14180 PF00072 Response regulator receiver domain C2I28_14185 PF03741 Integral membrane protein TerC family C2I28_14190 PF04542 Sigma-70 region 2 C2I28_14195 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_14220 PF00561 alpha/beta hydrolase fold C2I28_14225 PF02386 Cation transport protein C2I28_14235 PF00392 Bacterial regulatory proteins, gntR family C2I28_14235 PF07729 FCD domain C2I28_14240 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C2I28_14240 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain C2I28_14240 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C2I28_14245 PF02540 NAD synthase C2I28_14250 PF02754 Cysteine-rich domain C2I28_14255 PF02589 LUD domain C2I28_14255 PF13183 4Fe-4S dicluster domain C2I28_14255 PF11870 Domain of unknown function (DUF3390) C2I28_14260 PF02589 LUD domain C2I28_14265 PF13188 PAS domain C2I28_14265 PF13426 PAS domain C2I28_14265 PF00989 PAS fold C2I28_14265 PF00512 His Kinase A (phospho-acceptor) domain C2I28_14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_14270 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C2I28_14270 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C2I28_14280 PF01008 Initiation factor 2 subunit family C2I28_14285 PF01636 Phosphotransferase enzyme family C2I28_14290 PF00795 Carbon-nitrogen hydrolase C2I28_14295 PF00155 Aminotransferase class I and II C2I28_14300 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain C2I28_14300 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain C2I28_14310 PF00596 Class II Aldolase and Adducin N-terminal domain C2I28_14315 PF03079 ARD/ARD' family C2I28_14325 PF00005 ABC transporter C2I28_14330 PF02653 Branched-chain amino acid transport system / permease component C2I28_14335 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_14335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C2I28_14340 PF09388 Spo0E like sporulation regulatory protein C2I28_14345 PF02535 ZIP Zinc transporter C2I28_14355 PF01047 MarR family C2I28_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_14365 PF00512 His Kinase A (phospho-acceptor) domain C2I28_14365 PF08447 PAS fold C2I28_14365 PF00989 PAS fold C2I28_14375 PF17871 AAA lid domain C2I28_14375 PF07724 AAA domain (Cdc48 subfamily) C2I28_14375 PF00004 ATPase family associated with various cellular activities (AAA) C2I28_14375 PF10431 C-terminal, D2-small domain, of ClpB protein C2I28_14380 PF03553 Na+/H+ antiporter family C2I28_14390 PF00106 short chain dehydrogenase C2I28_14395 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_14400 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_14415 PF06508 Queuosine biosynthesis protein QueC C2I28_14420 PF01242 6-pyruvoyl tetrahydropterin synthase C2I28_14425 PF04055 Radical SAM superfamily C2I28_14430 PF14489 QueF-like protein C2I28_14435 PF13460 NAD(P)H-binding C2I28_14445 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) C2I28_14450 PF01734 Patatin-like phospholipase C2I28_14450 PF00027 Cyclic nucleotide-binding domain C2I28_14465 PF07486 Cell Wall Hydrolase C2I28_14480 PF00860 Permease family C2I28_14505 PF02574 Homocysteine S-methyltransferase C2I28_14505 PF00809 Pterin binding enzyme C2I28_14505 PF02965 Vitamin B12 dependent methionine synthase, activation domain C2I28_14505 PF02310 B12 binding domain C2I28_14505 PF02607 B12 binding domain C2I28_14510 PF02574 Homocysteine S-methyltransferase C2I28_14510 PF02219 Methylenetetrahydrofolate reductase C2I28_14525 PF00677 Lumazine binding domain C2I28_14530 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C2I28_14530 PF00925 GTP cyclohydrolase II C2I28_14535 PF00885 6,7-dimethyl-8-ribityllumazine synthase C2I28_14545 PF03123 CAT RNA binding domain C2I28_14545 PF00874 PRD domain C2I28_14550 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C2I28_14550 PF02378 Phosphotransferase system, EIIC C2I28_14550 PF00367 phosphotransferase system, EIIB C2I28_14555 PF00381 PTS HPr component phosphorylation site C2I28_14560 PF00391 PEP-utilising enzyme, mobile domain C2I28_14560 PF02896 PEP-utilising enzyme, TIM barrel domain C2I28_14560 PF05524 PEP-utilising enzyme, N-terminal C2I28_14565 PF04172 LrgB-like family C2I28_14570 PF03788 LrgA family C2I28_14575 PF03466 LysR substrate binding domain C2I28_14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_14585 PF00583 Acetyltransferase (GNAT) family C2I28_14595 PF00881 Nitroreductase family C2I28_14600 PF00155 Aminotransferase class I and II C2I28_14620 PF00072 Response regulator receiver domain C2I28_14620 PF01584 CheW-like domain C2I28_14625 PF14177 YkyB-like protein C2I28_14630 PF01476 LysM domain C2I28_14630 PF03734 L,D-transpeptidase catalytic domain C2I28_14635 PF02541 Ppx/GppA phosphatase family C2I28_14640 PF02503 Polyphosphate kinase middle domain C2I28_14640 PF13089 Polyphosphate kinase N-terminal domain C2I28_14640 PF17941 Polyphosphate kinase C-terminal domain 1 C2I28_14640 PF13090 Polyphosphate kinase C-terminal domain 2 C2I28_14650 PF00149 Calcineurin-like phosphoesterase C2I28_14650 PF10518 TAT (twin-arginine translocation) pathway signal sequence C2I28_14660 PF10388 EAL-domain associated signalling protein domain C2I28_14660 PF00563 EAL domain C2I28_14675 PF08796 Protein of unknown function (DUF1797) C2I28_14685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_14685 PF03466 LysR substrate binding domain C2I28_14690 PF00132 Bacterial transferase hexapeptide (six repeats) C2I28_14690 PF14602 Hexapeptide repeat of succinyl-transferase C2I28_14690 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal C2I28_14695 PF07687 Peptidase dimerisation domain C2I28_14695 PF01546 Peptidase family M20/M25/M40 C2I28_14700 PF03698 Uncharacterised protein family (UPF0180) C2I28_14705 PF00924 Mechanosensitive ion channel C2I28_14710 PF00578 AhpC/TSA family C2I28_14710 PF10417 C-terminal domain of 1-Cys peroxiredoxin C2I28_14715 PF00578 AhpC/TSA family C2I28_14720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C2I28_14720 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain C2I28_14725 PF00664 ABC transporter transmembrane region C2I28_14725 PF00005 ABC transporter C2I28_14730 PF00005 ABC transporter C2I28_14730 PF00664 ABC transporter transmembrane region C2I28_14735 PF02254 TrkA-N domain C2I28_14735 PF02080 TrkA-C domain C2I28_14740 PF17770 Ribonuclease J C-terminal domain C2I28_14740 PF00753 Metallo-beta-lactamase superfamily C2I28_14740 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C2I28_14745 PF07288 Protein of unknown function (DUF1447) C2I28_14755 PF01327 Polypeptide deformylase C2I28_14770 PF00676 Dehydrogenase E1 component C2I28_14775 PF02779 Transketolase, pyrimidine binding domain C2I28_14775 PF02780 Transketolase, C-terminal domain C2I28_14780 PF00364 Biotin-requiring enzyme C2I28_14780 PF02817 e3 binding domain C2I28_14780 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C2I28_14785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C2I28_14785 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_14795 PF02028 BCCT, betaine/carnitine/choline family transporter C2I28_14805 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain C2I28_14805 PF01276 Orn/Lys/Arg decarboxylase, major domain C2I28_14810 PF05256 Uncharacterised protein family (UPF0223) C2I28_14820 PF06335 Protein of unknown function (DUF1054) C2I28_14830 PF00459 Inositol monophosphatase family C2I28_14840 PF03144 Elongation factor Tu domain 2 C2I28_14840 PF14492 Elongation Factor G, domain II C2I28_14840 PF00009 Elongation factor Tu GTP binding domain C2I28_14840 PF00679 Elongation factor G C-terminus C2I28_14845 PF14036 YlaH-like protein C2I28_14855 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) C2I28_14865 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) C2I28_14870 PF02562 PhoH-like protein C2I28_14870 PF13638 PIN domain C2I28_14880 PF07408 Protein of unknown function (DUF1507) C2I28_14885 PF01098 Cell cycle protein C2I28_14890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C2I28_14890 PF02436 Conserved carboxylase domain C2I28_14890 PF00289 Biotin carboxylase, N-terminal domain C2I28_14890 PF00364 Biotin-requiring enzyme C2I28_14890 PF00682 HMGL-like C2I28_14890 PF02785 Biotin carboxylase C-terminal domain C2I28_14895 PF02628 Cytochrome oxidase assembly protein C2I28_14900 PF01040 UbiA prenyltransferase family C2I28_14905 PF00034 Cytochrome c C2I28_14905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C2I28_14905 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C2I28_14910 PF00115 Cytochrome C and Quinol oxidase polypeptide I C2I28_14915 PF00510 Cytochrome c oxidase subunit III C2I28_14920 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C2I28_14925 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) C2I28_14930 PF08868 YugN-like family C2I28_14935 PF00571 CBS domain C2I28_14940 PF14504 CAP-associated N-terminal C2I28_14940 PF00188 Cysteine-rich secretory protein family C2I28_14945 PF09577 Sporulation protein YpjB (SpoYpjB) C2I28_14950 PF04298 Putative neutral zinc metallopeptidase C2I28_14955 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_14955 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_14960 PF03819 MazG nucleotide pyrophosphohydrolase domain C2I28_14965 PF01113 Dihydrodipicolinate reductase, N-terminus C2I28_14965 PF05173 Dihydrodipicolinate reductase, C-terminus C2I28_14970 PF02142 MGS-like domain C2I28_14975 PF02585 GlcNAc-PI de-N-acetylase C2I28_14980 PF00534 Glycosyl transferases group 1 C2I28_14980 PF13439 Glycosyltransferase Family 4 C2I28_14985 PF13735 tRNA nucleotidyltransferase domain 2 putative C2I28_14985 PF12627 Probable RNA and SrmB- binding site of polymerase A C2I28_14985 PF01743 Poly A polymerase head domain C2I28_14990 PF08279 HTH domain C2I28_14990 PF03099 Biotin/lipoate A/B protein ligase family C2I28_14990 PF02237 Biotin protein ligase C terminal domain C2I28_14995 PF02548 Ketopantoate hydroxymethyltransferase C2I28_15000 PF02569 Pantoate-beta-alanine ligase C2I28_15005 PF02261 Aspartate decarboxylase C2I28_15010 PF00929 Exonuclease C2I28_15010 PF04851 Type III restriction enzyme, res subunit C2I28_15010 PF13307 Helicase C-terminal domain C2I28_15020 PF14084 Protein of unknown function (DUF4264) C2I28_15030 PF00155 Aminotransferase class I and II C2I28_15035 PF00152 tRNA synthetases class II (D, K and N) C2I28_15035 PF01336 OB-fold nucleic acid binding domain C2I28_15040 PF07261 Replication initiation and membrane attachment C2I28_15045 PF00633 Helix-hairpin-helix motif C2I28_15045 PF10576 Iron-sulfur binding domain of endonuclease III C2I28_15045 PF00730 HhH-GPD superfamily base excision DNA repair protein C2I28_15055 PF00912 Transglycosylase C2I28_15055 PF00905 Penicillin binding protein transpeptidase domain C2I28_15060 PF03838 Recombination protein U C2I28_15065 PF10720 Protein of unknown function (DUF2515) C2I28_15075 PF08807 Bacterial domain of unknown function (DUF1798) C2I28_15085 PF14179 YppG-like protein C2I28_15095 PF08757 CotH kinase protein C2I28_15110 PF01053 Cys/Met metabolism PLP-dependent enzyme C2I28_15115 PF01053 Cys/Met metabolism PLP-dependent enzyme C2I28_15130 PF00474 Sodium:solute symporter family C2I28_15135 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) C2I28_15140 PF00313 'Cold-shock' DNA-binding domain C2I28_15155 PF00990 Diguanylate cyclase, GGDEF domain C2I28_15165 PF00271 Helicase conserved C-terminal domain C2I28_15165 PF09369 Domain of unknown function (DUF1998) C2I28_15165 PF00270 DEAD/DEAH box helicase C2I28_15170 PF13482 RNase_H superfamily C2I28_15180 PF06908 YspA SLOG family C2I28_15185 PF05103 DivIVA protein C2I28_15210 PF07730 Histidine kinase C2I28_15210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_15215 PF00072 Response regulator receiver domain C2I28_15215 PF00196 Bacterial regulatory proteins, luxR family C2I28_15220 PF00128 Alpha amylase, catalytic domain C2I28_15220 PF16657 Maltogenic Amylase, C-terminal domain C2I28_15225 PF02926 THUMP domain C2I28_15225 PF01170 Putative RNA methylase family UPF0020 C2I28_15235 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15240 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15250 PF17912 MalK OB fold domain C2I28_15250 PF03459 TOBE domain C2I28_15250 PF00005 ABC transporter C2I28_15260 PF13307 Helicase C-terminal domain C2I28_15265 PF02074 Carboxypeptidase Taq (M32) metallopeptidase C2I28_15270 PF00156 Phosphoribosyl transferase domain C2I28_15275 PF00860 Permease family C2I28_15280 PF03466 LysR substrate binding domain C2I28_15280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_15285 PF00171 Aldehyde dehydrogenase family C2I28_15300 PF00195 Chalcone and stilbene synthases, N-terminal domain C2I28_15300 PF02797 Chalcone and stilbene synthases, C-terminal domain C2I28_15305 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family C2I28_15310 PF00350 Dynamin family C2I28_15315 PF10127 RNA repair pathway DNA polymerase beta family C2I28_15320 PF10752 Protein of unknown function (DUF2533) C2I28_15340 PF13456 Reverse transcriptase-like C2I28_15345 PF13456 Reverse transcriptase-like C2I28_15350 PF10782 Zinc-finger C2I28_15360 PF00313 'Cold-shock' DNA-binding domain C2I28_15370 PF07690 Major Facilitator Superfamily C2I28_15380 PF00860 Permease family C2I28_15385 PF04951 D-aminopeptidase C2I28_15390 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15395 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15395 PF12911 N-terminal TM domain of oligopeptide transport permease C C2I28_15400 PF00005 ABC transporter C2I28_15400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_15405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C2I28_15410 PF17676 LD-carboxypeptidase C-terminal domain C2I28_15410 PF02016 LD-carboxypeptidase N-terminal domain C2I28_15415 PF00877 NlpC/P60 family C2I28_15420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_15420 PF00005 ABC transporter C2I28_15435 PF13302 Acetyltransferase (GNAT) domain C2I28_15440 PF00563 EAL domain C2I28_15440 PF03707 Bacterial signalling protein N terminal repeat C2I28_15440 PF00990 Diguanylate cyclase, GGDEF domain C2I28_15445 PF09323 Domain of unknown function (DUF1980) C2I28_15450 PF03773 Predicted permease C2I28_15455 PF01497 Periplasmic binding protein C2I28_15460 PF01032 FecCD transport family C2I28_15465 PF01032 FecCD transport family C2I28_15470 PF00005 ABC transporter C2I28_15500 PF00196 Bacterial regulatory proteins, luxR family C2I28_15500 PF00072 Response regulator receiver domain C2I28_15505 PF07730 Histidine kinase C2I28_15510 PF00487 Fatty acid desaturase C2I28_15515 PF10990 Protein of unknown function (DUF2809) C2I28_15525 PF13091 PLD-like domain C2I28_15525 PF13396 Phospholipase_D-nuclease N-terminal C2I28_15530 PF06724 Domain of Unknown Function (DUF1206) C2I28_15535 PF10676 Spore germination protein gerPA/gerPF C2I28_15540 PF01476 LysM domain C2I28_15540 PF00877 NlpC/P60 family C2I28_15545 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase C2I28_15550 PF00483 Nucleotidyl transferase C2I28_15560 PF07690 Major Facilitator Superfamily C2I28_15580 PF01323 DSBA-like thioredoxin domain C2I28_15585 PF00082 Subtilase family C2I28_15595 PF01047 MarR family C2I28_15605 PF07690 Major Facilitator Superfamily C2I28_15610 PF01047 MarR family C2I28_15625 PF14151 YfhD-like protein C2I28_15630 PF01032 FecCD transport family C2I28_15635 PF01032 FecCD transport family C2I28_15640 PF01497 Periplasmic binding protein C2I28_15645 PF00005 ABC transporter C2I28_15650 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_15655 PF01053 Cys/Met metabolism PLP-dependent enzyme C2I28_15660 PF07690 Major Facilitator Superfamily C2I28_15665 PF00248 Aldo/keto reductase family C2I28_15680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain C2I28_15680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain C2I28_15685 PF01638 HxlR-like helix-turn-helix C2I28_15690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C2I28_15695 PF01266 FAD dependent oxidoreductase C2I28_15695 PF16350 FAD dependent oxidoreductase central domain C2I28_15695 PF08669 Glycine cleavage T-protein C-terminal barrel domain C2I28_15695 PF01571 Aminomethyltransferase folate-binding domain C2I28_15700 PF01266 FAD dependent oxidoreductase C2I28_15705 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C2I28_15705 PF00355 Rieske [2Fe-2S] domain C2I28_15710 PF00005 ABC transporter C2I28_15710 PF00571 CBS domain C2I28_15715 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15725 PF00224 Pyruvate kinase, barrel domain C2I28_15725 PF02887 Pyruvate kinase, alpha/beta domain C2I28_15725 PF00391 PEP-utilising enzyme, mobile domain C2I28_15730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_15730 PF00072 Response regulator receiver domain C2I28_15730 PF09308 LuxQ, periplasmic C2I28_15730 PF00512 His Kinase A (phospho-acceptor) domain C2I28_15735 PF01739 CheR methyltransferase, SAM binding domain C2I28_15735 PF03705 CheR methyltransferase, all-alpha domain C2I28_15740 PF07228 Stage II sporulation protein E (SpoIIE) C2I28_15740 PF13426 PAS domain C2I28_15750 PF13520 Amino acid permease C2I28_15760 PF13419 Haloacid dehalogenase-like hydrolase C2I28_15770 PF02435 Levansucrase/Invertase C2I28_15775 PF00251 Glycosyl hydrolases family 32 N-terminal domain C2I28_15775 PF08244 Glycosyl hydrolases family 32 C terminal C2I28_15780 PF00210 Ferritin-like domain C2I28_15785 PF07690 Major Facilitator Superfamily C2I28_15790 PF00155 Aminotransferase class I and II C2I28_15795 PF01370 NAD dependent epimerase/dehydratase family C2I28_15800 PF09021 HutP C2I28_15805 PF07690 Major Facilitator Superfamily C2I28_15820 PF00171 Aldehyde dehydrogenase family C2I28_15830 PF01810 LysE type translocator C2I28_15835 PF00324 Amino acid permease C2I28_15840 PF14139 YpzG-like protein C2I28_15845 PF00753 Metallo-beta-lactamase superfamily C2I28_15845 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain C2I28_15845 PF17770 Ribonuclease J C-terminal domain C2I28_15865 PF00324 Amino acid permease C2I28_15875 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_15880 PF00356 Bacterial regulatory proteins, lacI family C2I28_15885 PF01306 LacY proton/sugar symporter C2I28_15890 PF00251 Glycosyl hydrolases family 32 N-terminal domain C2I28_15890 PF08244 Glycosyl hydrolases family 32 C terminal C2I28_15895 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C2I28_15900 PF02435 Levansucrase/Invertase C2I28_15905 PF00158 Sigma-54 interaction domain C2I28_15905 PF00874 PRD domain C2I28_15905 PF03610 PTS system fructose IIA component C2I28_15910 PF03610 PTS system fructose IIA component C2I28_15915 PF03830 PTS system sorbose subfamily IIB component C2I28_15920 PF03609 PTS system sorbose-specific iic component C2I28_15925 PF03613 PTS system mannose/fructose/sorbose family IID component C2I28_15930 PF00251 Glycosyl hydrolases family 32 N-terminal domain C2I28_15930 PF08244 Glycosyl hydrolases family 32 C terminal C2I28_15935 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15940 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15945 PF00497 Bacterial extracellular solute-binding proteins, family 3 C2I28_15950 PF03180 NLPA lipoprotein C2I28_15955 PF00005 ABC transporter C2I28_15955 PF09383 NIL domain C2I28_15960 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_15965 PF03180 NLPA lipoprotein C2I28_15970 PF00296 Luciferase-like monooxygenase C2I28_15975 PF00557 Metallopeptidase family M24 C2I28_15985 PF04073 Aminoacyl-tRNA editing domain C2I28_15995 PF00248 Aldo/keto reductase family C2I28_16000 PF00221 Aromatic amino acid lyase C2I28_16005 PF17391 Urocanase N-terminal domain C2I28_16005 PF01175 Urocanase Rossmann-like domain C2I28_16005 PF17392 Urocanase C-terminal domain C2I28_16010 PF01979 Amidohydrolase family C2I28_16015 PF00491 Arginase family C2I28_16020 PF01156 Inosine-uridine preferring nucleoside hydrolase C2I28_16030 PF03606 C4-dicarboxylate anaerobic carrier C2I28_16035 PF01979 Amidohydrolase family C2I28_16040 PF03575 Peptidase family S51 C2I28_16045 PF00158 Sigma-54 interaction domain C2I28_16045 PF13426 PAS domain C2I28_16045 PF02954 Bacterial regulatory protein, Fis family C2I28_16065 PF13302 Acetyltransferase (GNAT) domain C2I28_16085 PF01047 MarR family C2I28_16090 PF00583 Acetyltransferase (GNAT) family C2I28_16095 PF01022 Bacterial regulatory protein, arsR family C2I28_16155 PF13419 Haloacid dehalogenase-like hydrolase C2I28_16160 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C2I28_16160 PF00391 PEP-utilising enzyme, mobile domain C2I28_16165 PF00440 Bacterial regulatory proteins, tetR family C2I28_16170 PF07690 Major Facilitator Superfamily C2I28_16175 PF00456 Transketolase, thiamine diphosphate binding domain C2I28_16175 PF02780 Transketolase, C-terminal domain C2I28_16175 PF02779 Transketolase, pyrimidine binding domain C2I28_16180 PF02779 Transketolase, pyrimidine binding domain C2I28_16180 PF02780 Transketolase, C-terminal domain C2I28_16190 PF07729 FCD domain C2I28_16190 PF00392 Bacterial regulatory proteins, gntR family C2I28_16195 PF07690 Major Facilitator Superfamily C2I28_16200 PF00365 Phosphofructokinase C2I28_16205 PF02502 Ribose/Galactose Isomerase C2I28_16210 PF00293 NUDIX domain C2I28_16225 PF00877 NlpC/P60 family C2I28_16225 PF01476 LysM domain C2I28_16230 PF01098 Cell cycle protein C2I28_16250 PF05163 DinB family C2I28_16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_16285 PF03466 LysR substrate binding domain C2I28_16290 PF12697 Alpha/beta hydrolase family C2I28_16310 PF00561 alpha/beta hydrolase fold C2I28_16340 PF09335 SNARE associated Golgi protein C2I28_16345 PF04101 Glycosyltransferase family 28 C-terminal domain C2I28_16345 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase C2I28_16350 PF01522 Polysaccharide deacetylase C2I28_16365 PF03845 Spore germination protein C2I28_16375 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_16380 PF12833 Helix-turn-helix domain C2I28_16415 PF13193 AMP-binding enzyme C-terminal domain C2I28_16415 PF00501 AMP-binding enzyme C2I28_16435 PF03176 MMPL family C2I28_16440 PF08361 MAATS-type transcriptional repressor, C-terminal region C2I28_16440 PF00440 Bacterial regulatory proteins, tetR family C2I28_16445 PF03741 Integral membrane protein TerC family C2I28_16460 PF07702 UTRA domain C2I28_16460 PF00392 Bacterial regulatory proteins, gntR family C2I28_16465 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit C2I28_16470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C2I28_16475 PF00232 Glycosyl hydrolase family 1 C2I28_16480 PF02378 Phosphotransferase system, EIIC C2I28_16485 PF00480 ROK family C2I28_16500 PF01037 Lrp/AsnC ligand binding domain C2I28_16505 PF06906 Protein of unknown function (DUF1272) C2I28_16530 PF00893 Small Multidrug Resistance protein C2I28_16535 PF00893 Small Multidrug Resistance protein C2I28_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_16540 PF03466 LysR substrate binding domain C2I28_16555 PF00313 'Cold-shock' DNA-binding domain C2I28_16565 PF00205 Thiamine pyrophosphate enzyme, central domain C2I28_16565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_16565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C2I28_16610 PF13581 Histidine kinase-like ATPase domain C2I28_16615 PF00704 Glycosyl hydrolases family 18 C2I28_16615 PF01476 LysM domain C2I28_16620 PF01476 LysM domain C2I28_16620 PF03734 L,D-transpeptidase catalytic domain C2I28_16625 PF00682 HMGL-like C2I28_16630 PF03601 Conserved hypothetical protein 698 C2I28_16640 PF01790 Prolipoprotein diacylglyceryl transferase C2I28_16660 PF08241 Methyltransferase domain C2I28_16675 PF13302 Acetyltransferase (GNAT) domain C2I28_16685 PF01451 Low molecular weight phosphotyrosine protein phosphatase C2I28_16690 PF02040 Arsenical pump membrane protein C2I28_16695 PF01022 Bacterial regulatory protein, arsR family C2I28_16705 PF01022 Bacterial regulatory protein, arsR family C2I28_16710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_16715 PF05995 Cysteine dioxygenase type I C2I28_16720 PF00892 EamA-like transporter family C2I28_16725 PF01638 HxlR-like helix-turn-helix C2I28_16730 PF00753 Metallo-beta-lactamase superfamily C2I28_16735 PF00795 Carbon-nitrogen hydrolase C2I28_16740 PF02311 AraC-like ligand binding domain C2I28_16740 PF12833 Helix-turn-helix domain C2I28_16745 PF00465 Iron-containing alcohol dehydrogenase C2I28_16750 PF02733 Dak1 domain C2I28_16780 PF00899 ThiF family C2I28_16800 PF00154 recA bacterial DNA recombination protein C2I28_16815 PF05163 DinB family C2I28_16825 PF01545 Cation efflux family C2I28_16825 PF16916 Dimerisation domain of Zinc Transporter C2I28_16855 PF02517 CPBP intramembrane metalloprotease C2I28_16860 PF13021 Domain of unknown function (DUF3885) C2I28_16895 PF00375 Sodium:dicarboxylate symporter family C2I28_16900 PF00206 Lyase C2I28_16900 PF10415 Fumarase C C-terminus C2I28_16905 PF00440 Bacterial regulatory proteins, tetR family C2I28_16910 PF00106 short chain dehydrogenase C2I28_16915 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_16915 PF00107 Zinc-binding dehydrogenase C2I28_16935 PF10502 Signal peptidase, peptidase S26 C2I28_16965 PF03773 Predicted permease C2I28_16980 PF00403 Heavy-metal-associated domain C2I28_17015 PF11798 IMS family HHH motif C2I28_17015 PF11799 impB/mucB/samB family C-terminal domain C2I28_17015 PF00817 impB/mucB/samB family C2I28_17035 PF00989 PAS fold C2I28_17035 PF00158 Sigma-54 interaction domain C2I28_17035 PF02954 Bacterial regulatory protein, Fis family C2I28_17040 PF03606 C4-dicarboxylate anaerobic carrier C2I28_17045 PF07687 Peptidase dimerisation domain C2I28_17045 PF01546 Peptidase family M20/M25/M40 C2I28_17055 PF00391 PEP-utilising enzyme, mobile domain C2I28_17055 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C2I28_17060 PF07722 Peptidase C26 C2I28_17065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C2I28_17070 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_17075 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_17075 PF12911 N-terminal TM domain of oligopeptide transport permease C C2I28_17080 PF00005 ABC transporter C2I28_17080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_17085 PF00005 ABC transporter C2I28_17085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_17090 PF04073 Aminoacyl-tRNA editing domain C2I28_17095 PF17247 Family of unknown function (DUF5316) C2I28_17105 PF00083 Sugar (and other) transporter C2I28_17120 PF00171 Aldehyde dehydrogenase family C2I28_17130 PF00072 Response regulator receiver domain C2I28_17130 PF00158 Sigma-54 interaction domain C2I28_17130 PF02954 Bacterial regulatory protein, Fis family C2I28_17135 PF00701 Dihydrodipicolinate synthetase family C2I28_17140 PF00465 Iron-containing alcohol dehydrogenase C2I28_17145 PF07005 Sugar-binding N-terminal domain C2I28_17145 PF17042 Nucleotide-binding C-terminal domain C2I28_17150 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C2I28_17180 PF00923 Transaldolase/Fructose-6-phosphate aldolase C2I28_17195 PF01263 Aldose 1-epimerase C2I28_17205 PF08943 CsiD C2I28_17210 PF01266 FAD dependent oxidoreductase C2I28_17215 PF00158 Sigma-54 interaction domain C2I28_17220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_17220 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_17220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_17225 PF00501 AMP-binding enzyme C2I28_17225 PF13193 AMP-binding enzyme C-terminal domain C2I28_17230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C2I28_17230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C2I28_17235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C2I28_17235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C2I28_17240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_17240 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_17240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_17245 PF00108 Thiolase, N-terminal domain C2I28_17245 PF02803 Thiolase, C-terminal domain C2I28_17250 PF02803 Thiolase, C-terminal domain C2I28_17250 PF00108 Thiolase, N-terminal domain C2I28_17255 PF00378 Enoyl-CoA hydratase/isomerase C2I28_17270 PF07690 Major Facilitator Superfamily C2I28_17275 PF03060 Nitronate monooxygenase C2I28_17280 PF00501 AMP-binding enzyme C2I28_17280 PF13193 AMP-binding enzyme C-terminal domain C2I28_17285 PF00571 CBS domain C2I28_17300 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C2I28_17305 PF00115 Cytochrome C and Quinol oxidase polypeptide I C2I28_17310 PF00510 Cytochrome c oxidase subunit III C2I28_17315 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C2I28_17320 PF00582 Universal stress protein family C2I28_17330 PF02628 Cytochrome oxidase assembly protein C2I28_17335 PF13454 FAD-NAD(P)-binding C2I28_17345 PF00860 Permease family C2I28_17350 PF03600 Citrate transporter C2I28_17355 PF00676 Dehydrogenase E1 component C2I28_17360 PF02779 Transketolase, pyrimidine binding domain C2I28_17360 PF02780 Transketolase, C-terminal domain C2I28_17365 PF00364 Biotin-requiring enzyme C2I28_17365 PF02817 e3 binding domain C2I28_17365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C2I28_17370 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_17370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C2I28_17375 PF02954 Bacterial regulatory protein, Fis family C2I28_17375 PF00158 Sigma-54 interaction domain C2I28_17375 PF01590 GAF domain C2I28_17380 PF01053 Cys/Met metabolism PLP-dependent enzyme C2I28_17385 PF01047 MarR family C2I28_17390 PF03845 Spore germination protein C2I28_17395 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_17400 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_17420 PF01594 AI-2E family transporter C2I28_17425 PF02416 mttA/Hcf106 family C2I28_17430 PF02614 Glucuronate isomerase C2I28_17440 PF00356 Bacterial regulatory proteins, lacI family C2I28_17445 PF01232 Mannitol dehydrogenase Rossmann domain C2I28_17445 PF08125 Mannitol dehydrogenase C-terminal domain C2I28_17450 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus C2I28_17450 PF08666 SAF domain C2I28_17455 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) C2I28_17455 PF08548 Peptidase M10 serralysin C terminal C2I28_17455 PF12708 Pectate lyase superfamily protein C2I28_17460 PF08532 Beta-galactosidase trimerisation domain C2I28_17460 PF08533 Beta-galactosidase C-terminal domain C2I28_17460 PF02449 Beta-galactosidase C2I28_17480 PF08864 UPF0302 domain C2I28_17480 PF08858 IDEAL domain C2I28_17485 PF00582 Universal stress protein family C2I28_17490 PF00989 PAS fold C2I28_17490 PF16736 Single Cache-like C2I28_17490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_17490 PF00512 His Kinase A (phospho-acceptor) domain C2I28_17495 PF00486 Transcriptional regulatory protein, C terminal C2I28_17495 PF00072 Response regulator receiver domain C2I28_17500 PF02583 Metal-sensitive transcriptional repressor C2I28_17505 PF00403 Heavy-metal-associated domain C2I28_17510 PF00403 Heavy-metal-associated domain C2I28_17520 PF07563 Protein of unknown function (DUF1541) C2I28_17525 PF07690 Major Facilitator Superfamily C2I28_17565 PF01022 Bacterial regulatory protein, arsR family C2I28_17570 PF02040 Arsenical pump membrane protein C2I28_17575 PF01751 Toprim domain C2I28_17575 PF13342 C-terminal repeat of topoisomerase C2I28_17575 PF01396 Topoisomerase DNA binding C4 zinc finger C2I28_17575 PF01131 DNA topoisomerase C2I28_17580 PF03061 Thioesterase superfamily C2I28_17585 PF00293 NUDIX domain C2I28_17590 PF04239 Protein of unknown function (DUF421) C2I28_17610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain C2I28_17610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain C2I28_17615 PF00180 Isocitrate/isopropylmalate dehydrogenase C2I28_17620 PF07690 Major Facilitator Superfamily C2I28_17625 PF01638 HxlR-like helix-turn-helix C2I28_17630 PF00925 GTP cyclohydrolase II C2I28_17630 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C2I28_17635 PF01872 RibD C-terminal domain C2I28_17635 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C2I28_17650 PF08241 Methyltransferase domain C2I28_17670 PF00581 Rhodanese-like domain C2I28_17680 PF13539 D-alanyl-D-alanine carboxypeptidase C2I28_17685 PF01522 Polysaccharide deacetylase C2I28_17725 PF04204 Homoserine O-succinyltransferase C2I28_17730 PF01268 Formate--tetrahydrofolate ligase C2I28_17740 PF00255 Glutathione peroxidase C2I28_17745 PF01966 HD domain C2I28_17750 PF12848 ABC transporter C2I28_17750 PF00005 ABC transporter C2I28_17750 PF16326 ABC transporter C-terminal domain C2I28_17755 PF13769 Virulence factor C2I28_17755 PF08712 Scaffold protein Nfu/NifU N terminal C2I28_17760 PF01522 Polysaccharide deacetylase C2I28_17760 PF13739 Deacetylase PdaC C2I28_17760 PF11738 Protein of unknown function (DUF3298) C2I28_17765 PF06491 Disulphide isomerase C2I28_17770 PF04445 Putative SAM-dependent methyltransferase C2I28_17775 PF14005 YpjP-like protein C2I28_17780 PF00085 Thioredoxin C2I28_17785 PF01497 Periplasmic binding protein C2I28_17795 PF03186 CobD/Cbib protein C2I28_17800 PF00155 Aminotransferase class I and II C2I28_17805 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase C2I28_17810 PF02654 Cobalamin-5-phosphate synthase C2I28_17815 PF00300 Histidine phosphatase superfamily (branch 1) C2I28_17825 PF01923 Cobalamin adenosyltransferase C2I28_17830 PF00892 EamA-like transporter family C2I28_17835 PF13411 MerR HTH family regulatory protein C2I28_17840 PF07683 Cobalamin synthesis protein cobW C-terminal domain C2I28_17840 PF02492 CobW/HypB/UreG, nucleotide-binding domain C2I28_17845 PF02558 Ketopantoate reductase PanE/ApbA C2I28_17845 PF08546 Ketopantoate reductase PanE/ApbA C terminal C2I28_17850 PF01541 GIY-YIG catalytic domain C2I28_17850 PF02151 UvrB/uvrC motif C2I28_17850 PF08459 UvrC Helix-hairpin-helix N-terminal C2I28_17860 PF01367 5'-3' exonuclease, C-terminal SAM fold C2I28_17860 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C2I28_17865 PF08830 Protein of unknown function (DUF1806) C2I28_17870 PF02585 GlcNAc-PI de-N-acetylase C2I28_17875 PF03807 NADP oxidoreductase coenzyme F420-dependent C2I28_17875 PF14748 Pyrroline-5-carboxylate reductase dimerisation C2I28_17880 PF04134 Protein of unknown function, DUF393 C2I28_17885 PF08281 Sigma-70, region 4 C2I28_17885 PF04542 Sigma-70 region 2 C2I28_17895 PF00011 Hsp20/alpha crystallin family C2I28_17900 PF02334 Replication terminator protein C2I28_17905 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin C2I28_17905 PF18277 AbrB C-terminal domain C2I28_17910 PF01554 MatE C2I28_17920 PF01593 Flavin containing amine oxidoreductase C2I28_17925 PF00535 Glycosyl transferase family 2 C2I28_17940 PF00884 Sulfatase C2I28_17950 PF05816 Toxic anion resistance protein (TelA) C2I28_17965 PF01522 Polysaccharide deacetylase C2I28_17970 PF02080 TrkA-C domain C2I28_17970 PF03471 Transporter associated domain C2I28_17970 PF00999 Sodium/hydrogen exchanger family C2I28_17975 PF02225 PA domain C2I28_17975 PF04389 Peptidase family M28 C2I28_17980 PF13188 PAS domain C2I28_17980 PF13426 PAS domain C2I28_17980 PF00512 His Kinase A (phospho-acceptor) domain C2I28_17980 PF00989 PAS fold C2I28_17980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_17990 PF00375 Sodium:dicarboxylate symporter family C2I28_17995 PF00128 Alpha amylase, catalytic domain C2I28_17995 PF03714 Bacterial pullanase-associated domain C2I28_17995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C2I28_18000 PF00171 Aldehyde dehydrogenase family C2I28_18005 PF00067 Cytochrome P450 C2I28_18020 PF01618 MotA/TolQ/ExbB proton channel family C2I28_18025 PF00691 OmpA family C2I28_18025 PF13677 Membrane MotB of proton-channel complex MotA/MotB C2I28_18035 PF01593 Flavin containing amine oxidoreductase C2I28_18040 PF09844 Uncharacterized conserved protein (COG2071) C2I28_18045 PF01625 Peptide methionine sulfoxide reductase C2I28_18050 PF03553 Na+/H+ antiporter family C2I28_18055 PF00392 Bacterial regulatory proteins, gntR family C2I28_18055 PF07729 FCD domain C2I28_18060 PF00324 Amino acid permease C2I28_18065 PF01757 Acyltransferase family C2I28_18070 PF05698 Bacterial trigger factor protein (TF) C-terminus C2I28_18075 PF00486 Transcriptional regulatory protein, C terminal C2I28_18075 PF00072 Response regulator receiver domain C2I28_18080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_18080 PF00512 His Kinase A (phospho-acceptor) domain C2I28_18085 PF01979 Amidohydrolase family C2I28_18090 PF00854 POT family C2I28_18100 PF00390 Malic enzyme, N-terminal domain C2I28_18100 PF03949 Malic enzyme, NAD binding domain C2I28_18105 PF03390 2-hydroxycarboxylate transporter family C2I28_18115 PF00296 Luciferase-like monooxygenase C2I28_18125 PF00583 Acetyltransferase (GNAT) family C2I28_18130 PF00462 Glutaredoxin C2I28_18135 PF00497 Bacterial extracellular solute-binding proteins, family 3 C2I28_18140 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_18145 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_18150 PF00005 ABC transporter C2I28_18155 PF01687 Riboflavin kinase C2I28_18160 PF00296 Luciferase-like monooxygenase C2I28_18170 PF01520 N-acetylmuramoyl-L-alanine amidase C2I28_18170 PF05036 Sporulation related domain C2I28_18205 PF00067 Cytochrome P450 C2I28_18210 PF03641 Possible lysine decarboxylase C2I28_18215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C2I28_18215 PF00390 Malic enzyme, N-terminal domain C2I28_18215 PF03949 Malic enzyme, NAD binding domain C2I28_18220 PF03703 Bacterial PH domain C2I28_18225 PF03703 Bacterial PH domain C2I28_18230 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_18240 PF00294 pfkB family carbohydrate kinase C2I28_18245 PF01040 UbiA prenyltransferase family C2I28_18250 PF05908 Poly-gamma-glutamate hydrolase C2I28_18260 PF13411 MerR HTH family regulatory protein C2I28_18280 PF08141 Small acid-soluble spore protein H family C2I28_18285 PF13039 Protein of unknown function (DUF3900) C2I28_18285 PF13037 Domain of unknown function (DUF3898) C2I28_18290 PF03466 LysR substrate binding domain C2I28_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_18295 PF04898 Glutamate synthase central domain C2I28_18295 PF01645 Conserved region in glutamate synthase C2I28_18295 PF01493 GXGXG motif C2I28_18295 PF00310 Glutamine amidotransferases class-II C2I28_18300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C2I28_18300 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_18320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C2I28_18320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C2I28_18335 PF13091 PLD-like domain C2I28_18350 PF01047 MarR family C2I28_18355 PF03788 LrgA family C2I28_18360 PF04172 LrgB-like family C2I28_18365 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain C2I28_18365 PF01740 STAS domain C2I28_18380 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase C2I28_18385 PF00535 Glycosyl transferase family 2 C2I28_18390 PF04138 GtrA-like protein C2I28_18395 PF00483 Nucleotidyl transferase C2I28_18400 PF00486 Transcriptional regulatory protein, C terminal C2I28_18400 PF00072 Response regulator receiver domain C2I28_18405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_18405 PF00672 HAMP domain C2I28_18405 PF00512 His Kinase A (phospho-acceptor) domain C2I28_18410 PF10055 Uncharacterized small protein (DUF2292) C2I28_18425 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_18430 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_18435 PF00005 ABC transporter C2I28_18435 PF17850 CysA C-terminal regulatory domain C2I28_18435 PF12857 TOBE-like domain C2I28_18440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C2I28_18440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C2I28_18445 PF00486 Transcriptional regulatory protein, C terminal C2I28_18445 PF00072 Response regulator receiver domain C2I28_18450 PF00672 HAMP domain C2I28_18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_18450 PF00512 His Kinase A (phospho-acceptor) domain C2I28_18455 PF00005 ABC transporter C2I28_18470 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_18470 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_18480 PF08220 DeoR-like helix-turn-helix domain C2I28_18480 PF00455 DeoR C terminal sensor domain C2I28_18485 PF00294 pfkB family carbohydrate kinase C2I28_18490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C2I28_18490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C2I28_18495 PF00696 Amino acid kinase family C2I28_18495 PF13840 ACT domain C2I28_18505 PF00080 Copper/zinc superoxide dismutase (SODC) C2I28_18510 PF01593 Flavin containing amine oxidoreductase C2I28_18520 PF00106 short chain dehydrogenase C2I28_18525 PF01022 Bacterial regulatory protein, arsR family C2I28_18530 PF00171 Aldehyde dehydrogenase family C2I28_18535 PF03070 TENA/THI-4/PQQC family C2I28_18550 PF00209 Sodium:neurotransmitter symporter family C2I28_18555 PF07486 Cell Wall Hydrolase C2I28_18560 PF00356 Bacterial regulatory proteins, lacI family C2I28_18570 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C2I28_18570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C2I28_18575 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C2I28_18575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C2I28_18580 PF01261 Xylose isomerase-like TIM barrel C2I28_18585 PF02245 Methylpurine-DNA glycosylase (MPG) C2I28_18595 PF01225 Mur ligase family, catalytic domain C2I28_18595 PF02875 Mur ligase family, glutamate ligase domain C2I28_18595 PF08245 Mur ligase middle domain C2I28_18605 PF00583 Acetyltransferase (GNAT) family C2I28_18610 PF08360 QacR-like protein, C-terminal region C2I28_18610 PF00440 Bacterial regulatory proteins, tetR family C2I28_18615 PF07690 Major Facilitator Superfamily C2I28_18620 PF02110 Hydroxyethylthiazole kinase family C2I28_18625 PF02581 Thiamine monophosphate synthase C2I28_18630 PF16242 Pyridoxamine 5'-phosphate oxidase like C2I28_18655 PF04542 Sigma-70 region 2 C2I28_18655 PF08281 Sigma-70, region 4 C2I28_18665 PF07728 AAA domain (dynein-related subfamily) C2I28_18670 PF00092 von Willebrand factor type A domain C2I28_18675 PF00892 EamA-like transporter family C2I28_18680 PF16353 Domain of unknown function(DUF4981) C2I28_18680 PF02837 Glycosyl hydrolases family 2, sugar binding domain C2I28_18680 PF02929 Beta galactosidase small chain C2I28_18680 PF02836 Glycosyl hydrolases family 2, TIM barrel domain C2I28_18680 PF00703 Glycosyl hydrolases family 2 C2I28_18685 PF12833 Helix-turn-helix domain C2I28_18685 PF02311 AraC-like ligand binding domain C2I28_18695 PF13302 Acetyltransferase (GNAT) domain C2I28_18700 PF00005 ABC transporter C2I28_18715 PF13249 Squalene-hopene cyclase N-terminal domain C2I28_18715 PF13243 Squalene-hopene cyclase C-terminal domain C2I28_18725 PF01256 Carbohydrate kinase C2I28_18725 PF03853 YjeF-related protein N-terminus C2I28_18735 PF02567 Phenazine biosynthesis-like protein C2I28_18745 PF01925 Sulfite exporter TauE/SafE C2I28_18750 PF11495 Archaeal transcriptional regulator TrmB C2I28_18750 PF01978 Sugar-specific transcriptional regulator TrmB C2I28_18755 PF02525 Flavodoxin-like fold C2I28_18770 PF00486 Transcriptional regulatory protein, C terminal C2I28_18770 PF00072 Response regulator receiver domain C2I28_18775 PF00512 His Kinase A (phospho-acceptor) domain C2I28_18775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_18780 PF00155 Aminotransferase class I and II C2I28_18780 PF00392 Bacterial regulatory proteins, gntR family C2I28_18785 PF01810 LysE type translocator C2I28_18790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_18805 PF10127 RNA repair pathway DNA polymerase beta family C2I28_18825 PF01381 Helix-turn-helix C2I28_18825 PF08671 Anti-repressor SinI C2I28_18835 PF02706 Chain length determinant protein C2I28_18835 PF13807 G-rich domain on putative tyrosine kinase C2I28_18840 PF13614 AAA domain C2I28_18845 PF02719 Polysaccharide biosynthesis protein C2I28_18850 PF13439 Glycosyltransferase Family 4 C2I28_18850 PF00534 Glycosyl transferases group 1 C2I28_18855 PF00535 Glycosyl transferase family 2 C2I28_18860 PF00534 Glycosyl transferases group 1 C2I28_18860 PF13439 Glycosyltransferase Family 4 C2I28_18865 PF00535 Glycosyl transferase family 2 C2I28_18875 PF16363 GDP-mannose 4,6 dehydratase C2I28_18880 PF02397 Bacterial sugar transferase C2I28_18885 PF00132 Bacterial transferase hexapeptide (six repeats) C2I28_18885 PF17836 PglD N-terminal domain C2I28_18890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C2I28_18895 PF01381 Helix-turn-helix C2I28_18895 PF08671 Anti-repressor SinI C2I28_18910 PF00535 Glycosyl transferase family 2 C2I28_18910 PF01501 Glycosyl transferase family 8 C2I28_18920 PF00534 Glycosyl transferases group 1 C2I28_18950 PF13537 Glutamine amidotransferase domain C2I28_18950 PF00733 Asparagine synthase C2I28_18955 PF07475 HPr Serine kinase C-terminal domain C2I28_18955 PF02603 HPr Serine kinase N terminus C2I28_18975 PF00664 ABC transporter transmembrane region C2I28_18975 PF00005 ABC transporter C2I28_19000 PF00005 ABC transporter C2I28_19000 PF00664 ABC transporter transmembrane region C2I28_19010 PF00149 Calcineurin-like phosphoesterase C2I28_19015 PF01494 FAD binding domain C2I28_19025 PF00293 NUDIX domain C2I28_19030 PF00857 Isochorismatase family C2I28_19035 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain C2I28_19035 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C2I28_19035 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C2I28_19040 PF01467 Cytidylyltransferase-like C2I28_19045 PF02540 NAD synthase C2I28_19050 PF00575 S1 RNA binding domain C2I28_19055 PF13860 FlgD Ig-like domain C2I28_19055 PF05922 Peptidase inhibitor I9 C2I28_19055 PF02225 PA domain C2I28_19055 PF00082 Subtilase family C2I28_19065 PF00708 Acylphosphatase C2I28_19070 PF07690 Major Facilitator Superfamily C2I28_19075 PF00296 Luciferase-like monooxygenase C2I28_19085 PF12833 Helix-turn-helix domain C2I28_19085 PF07883 Cupin domain C2I28_19090 PF00892 EamA-like transporter family C2I28_19095 PF12848 ABC transporter C2I28_19095 PF00005 ABC transporter C2I28_19100 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_19105 PF03845 Spore germination protein C2I28_19110 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_19115 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ C2I28_19120 PF00005 ABC transporter C2I28_19130 PF03553 Na+/H+ antiporter family C2I28_19135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C2I28_19135 PF00356 Bacterial regulatory proteins, lacI family C2I28_19140 PF11132 Transcriptional regulator protein (SplA) C2I28_19165 PF01751 Toprim domain C2I28_19165 PF01131 DNA topoisomerase C2I28_19175 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_19175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C2I28_19205 PF13091 PLD-like domain C2I28_19225 PF03553 Na+/H+ antiporter family C2I28_19230 PF03845 Spore germination protein C2I28_19235 PF05504 Spore germination B3/ GerAC like, C-terminal C2I28_19240 PF03323 Bacillus/Clostridium GerA spore germination protein C2I28_19250 PF13302 Acetyltransferase (GNAT) domain C2I28_19260 PF00512 His Kinase A (phospho-acceptor) domain C2I28_19260 PF13426 PAS domain C2I28_19260 PF13188 PAS domain C2I28_19260 PF00989 PAS fold C2I28_19260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_19265 PF00072 Response regulator receiver domain C2I28_19265 PF00158 Sigma-54 interaction domain C2I28_19265 PF02954 Bacterial regulatory protein, Fis family C2I28_19280 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C2I28_19280 PF13378 Enolase C-terminal domain-like C2I28_19285 PF00171 Aldehyde dehydrogenase family C2I28_19290 PF10415 Fumarase C C-terminus C2I28_19290 PF00206 Lyase C2I28_19295 PF00171 Aldehyde dehydrogenase family C2I28_19300 PF00107 Zinc-binding dehydrogenase C2I28_19300 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_19305 PF00465 Iron-containing alcohol dehydrogenase C2I28_19310 PF02028 BCCT, betaine/carnitine/choline family transporter C2I28_19315 PF04294 VanW like protein C2I28_19345 PF11181 Heat induced stress protein YflT C2I28_19355 PF00271 Helicase conserved C-terminal domain C2I28_19355 PF00270 DEAD/DEAH box helicase C2I28_19355 PF16124 RecQ zinc-binding C2I28_19355 PF09382 RQC domain C2I28_19355 PF00570 HRDC domain C2I28_19360 PF00158 Sigma-54 interaction domain C2I28_19365 PF00491 Arginase family C2I28_19370 PF00171 Aldehyde dehydrogenase family C2I28_19375 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin C2I28_19390 PF01040 UbiA prenyltransferase family C2I28_19395 PF02272 DHHA1 domain C2I28_19395 PF01411 tRNA synthetases class II (A) C2I28_19395 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C2I28_19400 PF01061 ABC-2 type transporter C2I28_19405 PF08000 Bacterial PH domain C2I28_19410 PF07690 Major Facilitator Superfamily C2I28_19415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_19415 PF03466 LysR substrate binding domain C2I28_19420 PF00392 Bacterial regulatory proteins, gntR family C2I28_19425 PF00005 ABC transporter C2I28_19435 PF08281 Sigma-70, region 4 C2I28_19435 PF04542 Sigma-70 region 2 C2I28_19445 PF11798 IMS family HHH motif C2I28_19445 PF11799 impB/mucB/samB family C-terminal domain C2I28_19445 PF00817 impB/mucB/samB family C2I28_19450 PF02566 OsmC-like protein C2I28_19455 PF01047 MarR family C2I28_19470 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) C2I28_19480 PF01476 LysM domain C2I28_19480 PF06725 3D domain C2I28_19500 PF00989 PAS fold C2I28_19500 PF13188 PAS domain C2I28_19500 PF00512 His Kinase A (phospho-acceptor) domain C2I28_19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_19500 PF13426 PAS domain C2I28_19505 PF14748 Pyrroline-5-carboxylate reductase dimerisation C2I28_19505 PF03807 NADP oxidoreductase coenzyme F420-dependent C2I28_19510 PF00696 Amino acid kinase family C2I28_19510 PF01472 PUA domain C2I28_19515 PF00171 Aldehyde dehydrogenase family C2I28_19530 PF03737 Aldolase/RraA C2I28_19545 PF03176 MMPL family C2I28_19555 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_19560 PF03631 Virulence factor BrkB C2I28_19570 PF07859 alpha/beta hydrolase fold C2I28_19600 PF01850 PIN domain C2I28_19610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_19620 PF01740 STAS domain C2I28_19625 PF11755 Protein of unknown function (DUF3311) C2I28_19630 PF00474 Sodium:solute symporter family C2I28_19640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C2I28_19640 PF02811 PHP domain C2I28_19640 PF00929 Exonuclease C2I28_19640 PF07733 Bacterial DNA polymerase III alpha NTPase domain C2I28_19640 PF11490 DNA polymerase III polC-type N-terminus II C2I28_19640 PF14480 DNA polymerase III polC-type N-terminus I C2I28_19640 PF14579 Helix-hairpin-helix motif C2I28_19650 PF05547 Immune inhibitor A peptidase M6 C2I28_19655 PF00206 Lyase C2I28_19655 PF10415 Fumarase C C-terminus C2I28_19665 PF01471 Putative peptidoglycan binding domain C2I28_19665 PF01183 Glycosyl hydrolases family 25 C2I28_19675 PF13188 PAS domain C2I28_19675 PF00989 PAS fold C2I28_19675 PF00512 His Kinase A (phospho-acceptor) domain C2I28_19675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_19675 PF13426 PAS domain C2I28_19690 PF03413 Peptidase propeptide and YPEB domain C2I28_19690 PF07504 Fungalysin/Thermolysin Propeptide Motif C2I28_19690 PF02868 Thermolysin metallopeptidase, alpha-helical domain C2I28_19690 PF01447 Thermolysin metallopeptidase, catalytic domain C2I28_19700 PF00923 Transaldolase/Fructose-6-phosphate aldolase C2I28_19715 PF00881 Nitroreductase family C2I28_19725 PF00106 short chain dehydrogenase C2I28_19730 PF17203 Single cache domain 3 C2I28_19730 PF00989 PAS fold C2I28_19730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_19730 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C2I28_19735 PF12431 Transcriptional regulator C2I28_19735 PF00072 Response regulator receiver domain C2I28_19740 PF03600 Citrate transporter C2I28_19760 PF07687 Peptidase dimerisation domain C2I28_19760 PF01546 Peptidase family M20/M25/M40 C2I28_19775 PF01596 O-methyltransferase C2I28_19780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_19780 PF03466 LysR substrate binding domain C2I28_19790 PF00375 Sodium:dicarboxylate symporter family C2I28_19795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C2I28_19795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C2I28_19805 PF01266 FAD dependent oxidoreductase C2I28_19810 PF10925 Protein of unknown function (DUF2680) C2I28_19815 PF08447 PAS fold C2I28_19815 PF00512 His Kinase A (phospho-acceptor) domain C2I28_19815 PF00989 PAS fold C2I28_19815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_19825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_19825 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_19825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_19835 PF00501 AMP-binding enzyme C2I28_19835 PF13193 AMP-binding enzyme C-terminal domain C2I28_19840 PF00440 Bacterial regulatory proteins, tetR family C2I28_19840 PF16925 Tetracyclin repressor-like, C-terminal domain C2I28_19845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C2I28_19845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C2I28_19850 PF00378 Enoyl-CoA hydratase/isomerase C2I28_19865 PF04029 2-phosphosulpholactate phosphatase C2I28_19870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_19870 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_19870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C2I28_19880 PF00378 Enoyl-CoA hydratase/isomerase C2I28_19885 PF14765 Polyketide synthase dehydratase C2I28_19885 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_19885 PF00550 Phosphopantetheine attachment site C2I28_19885 PF08659 KR domain C2I28_19885 PF16197 Ketoacyl-synthetase C-terminal extension C2I28_19885 PF00109 Beta-ketoacyl synthase, N-terminal domain C2I28_19885 PF00698 Acyl transferase domain C2I28_19885 PF02801 Beta-ketoacyl synthase, C-terminal domain C2I28_19890 PF01680 SOR/SNZ family C2I28_19905 PF01144 Coenzyme A transferase C2I28_19910 PF01144 Coenzyme A transferase C2I28_19915 PF02803 Thiolase, C-terminal domain C2I28_19915 PF00108 Thiolase, N-terminal domain C2I28_19920 PF00202 Aminotransferase class-III C2I28_19925 PF00202 Aminotransferase class-III C2I28_19930 PF00171 Aldehyde dehydrogenase family C2I28_19945 PF12544 Lysine-2,3-aminomutase C2I28_19950 PF14122 YokU-like protein, putative antitoxin C2I28_19955 PF00324 Amino acid permease C2I28_19960 PF00753 Metallo-beta-lactamase superfamily C2I28_19975 PF00465 Iron-containing alcohol dehydrogenase C2I28_19980 PF07690 Major Facilitator Superfamily C2I28_19985 PF01820 D-ala D-ala ligase N-terminus C2I28_19985 PF07478 D-ala D-ala ligase C-terminus C2I28_19995 PF00892 EamA-like transporter family C2I28_20005 PF00155 Aminotransferase class I and II C2I28_20015 PF00253 Ribosomal protein S14p/S29e C2I28_20020 PF07486 Cell Wall Hydrolase C2I28_20030 PF16347 Domain of unknown function (DUF4976) C2I28_20030 PF00884 Sulfatase C2I28_20035 PF03129 Anticodon binding domain C2I28_20035 PF02824 TGS domain C2I28_20035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C2I28_20035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C2I28_20045 PF13520 Amino acid permease C2I28_20050 PF07690 Major Facilitator Superfamily C2I28_20055 PF01047 MarR family C2I28_20060 PF03176 MMPL family C2I28_20065 PF13426 PAS domain C2I28_20065 PF01740 STAS domain C2I28_20070 PF08327 Activator of Hsp90 ATPase homolog 1-like protein C2I28_20075 PF01022 Bacterial regulatory protein, arsR family C2I28_20090 PF12697 Alpha/beta hydrolase family C2I28_20095 PF12368 Rhodanase C-terminal C2I28_20095 PF17773 UPF0176 acylphosphatase like domain C2I28_20095 PF00581 Rhodanese-like domain C2I28_20100 PF08450 SMP-30/Gluconolactonase/LRE-like region C2I28_20105 PF01152 Bacterial-like globin C2I28_20110 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal C2I28_20110 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal C2I28_20115 PF05675 Protein of unknown function (DUF817) C2I28_20125 PF00183 Hsp90 protein C2I28_20130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C2I28_20130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C2I28_20130 PF01842 ACT domain C2I28_20150 PF13291 ACT domain C2I28_20150 PF04607 Region found in RelA / SpoT proteins C2I28_20150 PF02824 TGS domain C2I28_20165 PF00892 EamA-like transporter family C2I28_20170 PF00392 Bacterial regulatory proteins, gntR family C2I28_20170 PF00155 Aminotransferase class I and II C2I28_20185 PF13091 PLD-like domain C2I28_20185 PF13396 Phospholipase_D-nuclease N-terminal C2I28_20190 PF14864 Alkyl sulfatase C-terminal C2I28_20190 PF00753 Metallo-beta-lactamase superfamily C2I28_20190 PF14863 Alkyl sulfatase dimerisation C2I28_20195 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C2I28_20195 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C2I28_20245 PF01497 Periplasmic binding protein C2I28_20250 PF07977 FabA-like domain C2I28_20260 PF00293 NUDIX domain C2I28_20265 PF13460 NAD(P)H-binding C2I28_20270 PF13193 AMP-binding enzyme C-terminal domain C2I28_20270 PF00501 AMP-binding enzyme C2I28_20275 PF01047 MarR family C2I28_20280 PF04294 VanW like protein C2I28_20285 PF00501 AMP-binding enzyme C2I28_20285 PF13193 AMP-binding enzyme C-terminal domain C2I28_20325 PF00282 Pyridoxal-dependent decarboxylase conserved domain C2I28_20340 PF00009 Elongation factor Tu GTP binding domain C2I28_20340 PF14492 Elongation Factor G, domain II C2I28_20340 PF03764 Elongation factor G, domain IV C2I28_20340 PF00679 Elongation factor G C-terminus C2I28_20350 PF01226 Formate/nitrite transporter C2I28_20355 PF10057 Uncharacterized conserved protein (DUF2294) C2I28_20370 PF07690 Major Facilitator Superfamily C2I28_20375 PF01565 FAD binding domain C2I28_20380 PF02743 Cache domain C2I28_20380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C2I28_20380 PF00672 HAMP domain C2I28_20390 PF12850 Calcineurin-like phosphoesterase superfamily domain C2I28_20400 PF00149 Calcineurin-like phosphoesterase C2I28_20405 PF03167 Uracil DNA glycosylase superfamily C2I28_20410 PF00877 NlpC/P60 family C2I28_20415 PF02602 Uroporphyrinogen-III synthase HemD C2I28_20420 PF09339 IclR helix-turn-helix domain C2I28_20420 PF01614 Bacterial transcriptional regulator C2I28_20425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C2I28_20425 PF02785 Biotin carboxylase C-terminal domain C2I28_20425 PF00289 Biotin carboxylase, N-terminal domain C2I28_20430 PF00364 Biotin-requiring enzyme C2I28_20435 PF02626 Carboxyltransferase domain, subdomain A and B C2I28_20440 PF02682 Carboxyltransferase domain, subdomain C and D C2I28_20445 PF07286 Protein of unknown function (DUF1445) C2I28_20450 PF01566 Natural resistance-associated macrophage protein C2I28_20455 PF03746 LamB/YcsF family C2I28_20460 PF00128 Alpha amylase, catalytic domain C2I28_20460 PF11941 Domain of unknown function (DUF3459) C2I28_20470 PF01965 DJ-1/PfpI family C2I28_20480 PF09335 SNARE associated Golgi protein C2I28_20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_20485 PF00512 His Kinase A (phospho-acceptor) domain C2I28_20490 PF00486 Transcriptional regulatory protein, C terminal C2I28_20490 PF00072 Response regulator receiver domain C2I28_20500 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_20500 PF00107 Zinc-binding dehydrogenase C2I28_20510 PF04072 Leucine carboxyl methyltransferase C2I28_20515 PF01494 FAD binding domain C2I28_20540 PF13673 Acetyltransferase (GNAT) domain C2I28_20540 PF04229 GrpB protein C2I28_20580 PF13193 AMP-binding enzyme C-terminal domain C2I28_20580 PF00501 AMP-binding enzyme C2I28_20585 PF02632 BioY family C2I28_20590 PF00108 Thiolase, N-terminal domain C2I28_20590 PF02803 Thiolase, C-terminal domain C2I28_20600 PF00271 Helicase conserved C-terminal domain C2I28_20600 PF00176 SNF2 family N-terminal domain C2I28_20600 PF04434 SWIM zinc finger C2I28_20610 PF03358 NADPH-dependent FMN reductase C2I28_20615 PF00072 Response regulator receiver domain C2I28_20615 PF00196 Bacterial regulatory proteins, luxR family C2I28_20620 PF07730 Histidine kinase C2I28_20620 PF13185 GAF domain C2I28_20640 PF13536 Putative multidrug resistance efflux transporter C2I28_20650 PF13673 Acetyltransferase (GNAT) domain C2I28_20655 PF00920 Dehydratase family C2I28_20660 PF12146 Serine aminopeptidase, S33 C2I28_20665 PF02833 DHHA2 domain C2I28_20665 PF01368 DHH family C2I28_20685 PF01063 Amino-transferase class IV C2I28_20695 PF01553 Acyltransferase C2I28_20700 PF00860 Permease family C2I28_20705 PF09349 OHCU decarboxylase C2I28_20705 PF01014 Uricase C2I28_20710 PF00576 HIUase/Transthyretin family C2I28_20715 PF13302 Acetyltransferase (GNAT) domain C2I28_20730 PF01566 Natural resistance-associated macrophage protein C2I28_20745 PF13419 Haloacid dehalogenase-like hydrolase C2I28_20750 PF01047 MarR family C2I28_20760 PF00589 Phage integrase family C2I28_20760 PF02899 Phage integrase, N-terminal SAM-like domain C2I28_20775 PF13520 Amino acid permease C2I28_20780 PF05985 Ethanolamine ammonia-lyase light chain (EutC) C2I28_20785 PF06751 Ethanolamine ammonia lyase large subunit (EutB) C2I28_20790 PF06277 Ethanolamine utilisation protein EutA C2I28_20795 PF09515 Thiamine transporter protein (Thia_YuaJ) C2I28_20800 PF00324 Amino acid permease C2I28_20810 PF00583 Acetyltransferase (GNAT) family C2I28_20815 PF00857 Isochorismatase family C2I28_20825 PF08892 YqcI/YcgG family C2I28_20830 PF01810 LysE type translocator C2I28_20835 PF08386 TAP-like protein C2I28_20835 PF00561 alpha/beta hydrolase fold C2I28_20840 PF00521 DNA gyrase/topoisomerase IV, subunit A C2I28_20840 PF03989 DNA gyrase C-terminal domain, beta-propeller C2I28_20845 PF00986 DNA gyrase B subunit, carboxyl terminus C2I28_20845 PF01751 Toprim domain C2I28_20845 PF00204 DNA gyrase B C2I28_20845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_20850 PF13380 CoA binding domain C2I28_20855 PF02660 Glycerol-3-phosphate acyltransferase C2I28_20860 PF01521 Iron-sulphur cluster biosynthesis C2I28_20865 PF03061 Thioesterase superfamily C2I28_20885 PF08177 Small acid-soluble spore protein N family C2I28_20895 PF00578 AhpC/TSA family C2I28_20900 PF00694 Aconitase C-terminal domain C2I28_20900 PF00330 Aconitase family (aconitate hydratase) C2I28_20910 PF08179 Small acid-soluble spore protein P family C2I28_20915 PF00011 Hsp20/alpha crystallin family C2I28_20920 PF02735 Ku70/Ku80 beta-barrel domain C2I28_20945 PF00111 2Fe-2S iron-sulfur cluster binding domain C2I28_20945 PF01799 [2Fe-2S] binding domain C2I28_20950 PF03450 CO dehydrogenase flavoprotein C-terminal domain C2I28_20950 PF00941 FAD binding domain in molybdopterin dehydrogenase C2I28_20955 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain C2I28_20955 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase C2I28_20960 PF12804 MobA-like NTP transferase domain C2I28_20965 PF02625 XdhC and CoxI family C2I28_20965 PF13478 XdhC Rossmann domain C2I28_21025 PF01066 CDP-alcohol phosphatidyltransferase C2I28_21040 PF07690 Major Facilitator Superfamily C2I28_21055 PF03780 Asp23 family, cell envelope-related function C2I28_21070 PF03631 Virulence factor BrkB C2I28_21080 PF01235 Sodium:alanine symporter family C2I28_21085 PF07690 Major Facilitator Superfamily C2I28_21095 PF07690 Major Facilitator Superfamily C2I28_21100 PF13411 MerR HTH family regulatory protein C2I28_21110 PF00484 Carbonic anhydrase C2I28_21115 PF00916 Sulfate permease family C2I28_21115 PF01740 STAS domain C2I28_21120 PF00486 Transcriptional regulatory protein, C terminal C2I28_21120 PF00072 Response regulator receiver domain C2I28_21125 PF00672 HAMP domain C2I28_21125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_21125 PF00512 His Kinase A (phospho-acceptor) domain C2I28_21125 PF13426 PAS domain C2I28_21135 PF09346 SMI1 / KNR4 family (SUKH-1) C2I28_21140 PF13520 Amino acid permease C2I28_21150 PF07454 Stage II sporulation protein P (SpoIIP) C2I28_21155 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP C2I28_21155 PF12557 Cob(I)alamin adenosyltransferase N terminal C2I28_21165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_21170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C2I28_21170 PF07685 CobB/CobQ-like glutamine amidotransferase domain C2I28_21175 PF01890 Cobalamin synthesis G C-terminus C2I28_21175 PF11760 Cobalamin synthesis G N-terminal C2I28_21175 PF11761 Cobalamin biosynthesis central region C2I28_21180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_21185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_21190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_21195 PF01888 CbiD C2I28_21200 PF02570 Precorrin-8X methylmutase C2I28_21205 PF02571 Precorrin-6x reductase CbiJ/CobK C2I28_21210 PF01903 CbiX C2I28_21215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C2I28_21215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C2I28_21225 PF05343 M42 glutamyl aminopeptidase C2I28_21230 PF00375 Sodium:dicarboxylate symporter family C2I28_21235 PF05525 Branched-chain amino acid transport protein C2I28_21255 PF00909 Ammonium Transporter Family C2I28_21265 PF07849 Protein of unknown function (DUF1641) C2I28_21270 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_21275 PF03547 Membrane transport protein C2I28_21280 PF03949 Malic enzyme, NAD binding domain C2I28_21280 PF00390 Malic enzyme, N-terminal domain C2I28_21285 PF01546 Peptidase family M20/M25/M40 C2I28_21290 PF07690 Major Facilitator Superfamily C2I28_21310 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C2I28_21315 PF02441 Flavoprotein C2I28_21320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_21320 PF03466 LysR substrate binding domain C2I28_21325 PF03547 Membrane transport protein C2I28_21345 PF00296 Luciferase-like monooxygenase C2I28_21350 PF02754 Cysteine-rich domain C2I28_21350 PF13183 4Fe-4S dicluster domain C2I28_21355 PF02913 FAD linked oxidases, C-terminal domain C2I28_21355 PF01565 FAD binding domain C2I28_21360 PF13556 PucR C-terminal helix-turn-helix domain C2I28_21360 PF17853 GGDEF-like domain C2I28_21360 PF05651 Putative sugar diacid recognition C2I28_21365 PF01965 DJ-1/PfpI family C2I28_21380 PF00465 Iron-containing alcohol dehydrogenase C2I28_21395 PF00005 ABC transporter C2I28_21405 PF00196 Bacterial regulatory proteins, luxR family C2I28_21405 PF00072 Response regulator receiver domain C2I28_21410 PF07687 Peptidase dimerisation domain C2I28_21410 PF01546 Peptidase family M20/M25/M40 C2I28_21435 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase C2I28_21440 PF00296 Luciferase-like monooxygenase C2I28_21450 PF09335 SNARE associated Golgi protein C2I28_21455 PF04493 Endonuclease V C2I28_21460 PF03009 Glycerophosphoryl diester phosphodiesterase family C2I28_21530 PF01554 MatE C2I28_21545 PF01047 MarR family C2I28_21550 PF03372 Endonuclease/Exonuclease/phosphatase family C2I28_21555 PF03928 Haem-degrading C2I28_21560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C2I28_21560 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C2I28_21565 PF00455 DeoR C terminal sensor domain C2I28_21565 PF08220 DeoR-like helix-turn-helix domain C2I28_21570 PF05816 Toxic anion resistance protein (TelA) C2I28_21575 PF14266 Putative component of 'biosynthetic module' C2I28_21580 PF02342 TerD domain C2I28_21585 PF02342 TerD domain C2I28_21590 PF02342 TerD domain C2I28_21595 PF02872 5'-nucleotidase, C-terminal domain C2I28_21595 PF00149 Calcineurin-like phosphoesterase C2I28_21615 PF12679 ABC-2 family transporter protein C2I28_21620 PF00005 ABC transporter C2I28_21630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C2I28_21630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C2I28_21635 PF00313 'Cold-shock' DNA-binding domain C2I28_21640 PF00155 Aminotransferase class I and II C2I28_21640 PF00392 Bacterial regulatory proteins, gntR family C2I28_21645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C2I28_21645 PF00205 Thiamine pyrophosphate enzyme, central domain C2I28_21645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C2I28_21650 PF00313 'Cold-shock' DNA-binding domain C2I28_21685 PF00107 Zinc-binding dehydrogenase C2I28_21685 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_21690 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C2I28_21690 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C2I28_21695 PF00072 Response regulator receiver domain C2I28_21695 PF04397 LytTr DNA-binding domain C2I28_21700 PF04239 Protein of unknown function (DUF421) C2I28_21705 PF07690 Major Facilitator Superfamily C2I28_21710 PF01476 LysM domain C2I28_21710 PF06725 3D domain C2I28_21715 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C2I28_21715 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C2I28_21740 PF03575 Peptidase family S51 C2I28_21750 PF00133 tRNA synthetases class I (I, L, M and V) C2I28_21750 PF08264 Anticodon-binding domain of tRNA C2I28_21765 PF00453 Ribosomal protein L20 C2I28_21770 PF01734 Patatin-like phospholipase C2I28_21795 PF05163 DinB family C2I28_21805 PF06039 Malate:quinone oxidoreductase (Mqo) C2I28_21910 PF14449 Pre-toxin TG C2I28_21910 PF04740 LXG domain of WXG superfamily C2I28_21930 PF12848 ABC transporter C2I28_21930 PF00005 ABC transporter C2I28_21935 PF02056 Family 4 glycosyl hydrolase C2I28_21935 PF11975 Family 4 glycosyl hydrolase C-terminal domain C2I28_21940 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_21945 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_21950 PF01547 Bacterial extracellular solute-binding protein C2I28_21955 PF00356 Bacterial regulatory proteins, lacI family C2I28_21970 PF05958 tRNA (Uracil-5-)-methyltransferase C2I28_21970 PF01938 TRAM domain C2I28_21985 PF13419 Haloacid dehalogenase-like hydrolase C2I28_21990 PF00561 alpha/beta hydrolase fold C2I28_21995 PF02595 Glycerate kinase family C2I28_22000 PF02447 GntP family permease C2I28_22005 PF05651 Putative sugar diacid recognition C2I28_22005 PF13556 PucR C-terminal helix-turn-helix domain C2I28_22005 PF17853 GGDEF-like domain C2I28_22010 PF02954 Bacterial regulatory protein, Fis family C2I28_22010 PF00989 PAS fold C2I28_22010 PF00158 Sigma-54 interaction domain C2I28_22015 PF00753 Metallo-beta-lactamase superfamily C2I28_22020 PF00465 Iron-containing alcohol dehydrogenase C2I28_22025 PF05656 Protein of unknown function (DUF805) C2I28_22040 PF07992 Pyridine nucleotide-disulphide oxidoreductase C2I28_22050 PF00497 Bacterial extracellular solute-binding proteins, family 3 C2I28_22055 PF00296 Luciferase-like monooxygenase C2I28_22060 PF05656 Protein of unknown function (DUF805) C2I28_22065 PF05656 Protein of unknown function (DUF805) C2I28_22080 PF02293 AmiS/UreI family transporter C2I28_22085 PF01773 Na+ dependent nucleoside transporter N-terminus C2I28_22085 PF07662 Na+ dependent nucleoside transporter C-terminus C2I28_22090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C2I28_22095 PF01791 DeoC/LacD family aldolase C2I28_22100 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain C2I28_22100 PF00591 Glycosyl transferase family, a/b domain C2I28_22100 PF02885 Glycosyl transferase family, helical bundle domain C2I28_22110 PF04198 Putative sugar-binding domain C2I28_22140 PF02660 Glycerol-3-phosphate acyltransferase C2I28_22145 PF01435 Peptidase family M48 C2I28_22150 PF00753 Metallo-beta-lactamase superfamily C2I28_22155 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C2I28_22165 PF01547 Bacterial extracellular solute-binding protein C2I28_22170 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_22175 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_22180 PF00106 short chain dehydrogenase C2I28_22185 PF02667 Short chain fatty acid transporter C2I28_22205 PF09587 Bacterial capsule synthesis protein PGA_cap C2I28_22215 PF04143 Sulphur transport C2I28_22230 PF00465 Iron-containing alcohol dehydrogenase C2I28_22235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_22235 PF03466 LysR substrate binding domain C2I28_22250 PF00583 Acetyltransferase (GNAT) family C2I28_22250 PF00814 Glycoprotease family C2I28_22255 PF07690 Major Facilitator Superfamily C2I28_22290 PF00107 Zinc-binding dehydrogenase C2I28_22290 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_22295 PF00392 Bacterial regulatory proteins, gntR family C2I28_22295 PF07729 FCD domain C2I28_22315 PF00999 Sodium/hydrogen exchanger family C2I28_22320 PF00571 CBS domain C2I28_22320 PF03471 Transporter associated domain C2I28_22320 PF01595 Cyclin M transmembrane N-terminal domain C2I28_22330 PF10011 Predicted membrane protein (DUF2254) C2I28_22345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C2I28_22345 PF00005 ABC transporter C2I28_22350 PF00005 ABC transporter C2I28_22355 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_22360 PF00528 Binding-protein-dependent transport system inner membrane component C2I28_22365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C2I28_22375 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_22375 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_22395 PF00565 Staphylococcal nuclease homologue C2I28_22405 PF06039 Malate:quinone oxidoreductase (Mqo) C2I28_22410 PF03618 Kinase/pyrophosphorylase C2I28_22430 PF00924 Mechanosensitive ion channel C2I28_22460 PF02073 Thermophilic metalloprotease (M29) C2I28_22465 PF01614 Bacterial transcriptional regulator C2I28_22465 PF09339 IclR helix-turn-helix domain C2I28_22470 PF01557 Fumarylacetoacetate (FAA) hydrolase family C2I28_22475 PF01274 Malate synthase C2I28_22480 PF02913 FAD linked oxidases, C-terminal domain C2I28_22480 PF01565 FAD binding domain C2I28_22485 PF13183 4Fe-4S dicluster domain C2I28_22485 PF02754 Cysteine-rich domain C2I28_22490 PF01565 FAD binding domain C2I28_22490 PF02913 FAD linked oxidases, C-terminal domain C2I28_22495 PF02652 L-lactate permease C2I28_22510 PF10997 Alternate to MurJ C2I28_22515 PF12679 ABC-2 family transporter protein C2I28_22520 PF13732 Domain of unknown function (DUF4162) C2I28_22520 PF00005 ABC transporter C2I28_22525 PF13396 Phospholipase_D-nuclease N-terminal C2I28_22540 PF08281 Sigma-70, region 4 C2I28_22540 PF04542 Sigma-70 region 2 C2I28_22555 PF10676 Spore germination protein gerPA/gerPF C2I28_22565 PF05360 yiaA/B two helix domain C2I28_22575 PF12146 Serine aminopeptidase, S33 C2I28_22580 PF00296 Luciferase-like monooxygenase C2I28_22585 PF01740 STAS domain C2I28_22590 PF01544 CorA-like Mg2+ transporter protein C2I28_22605 PF04239 Protein of unknown function (DUF421) C2I28_22610 PF02557 D-alanyl-D-alanine carboxypeptidase C2I28_22620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_22620 PF16736 Single Cache-like C2I28_22620 PF00989 PAS fold C2I28_22620 PF00512 His Kinase A (phospho-acceptor) domain C2I28_22625 PF00072 Response regulator receiver domain C2I28_22625 PF00486 Transcriptional regulatory protein, C terminal C2I28_22635 PF01494 FAD binding domain C2I28_22650 PF02817 e3 binding domain C2I28_22650 PF00364 Biotin-requiring enzyme C2I28_22650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C2I28_22655 PF00676 Dehydrogenase E1 component C2I28_22655 PF16870 2-oxoglutarate dehydrogenase C-terminal C2I28_22655 PF02779 Transketolase, pyrimidine binding domain C2I28_22665 PF07690 Major Facilitator Superfamily C2I28_22670 PF02566 OsmC-like protein C2I28_22680 PF04235 Protein of unknown function (DUF418) C2I28_22735 PF00543 Nitrogen regulatory protein P-II C2I28_22740 PF00909 Ammonium Transporter Family C2I28_22745 PF03806 AbgT putative transporter family C2I28_22760 PF00561 alpha/beta hydrolase fold C2I28_22775 PF13673 Acetyltransferase (GNAT) domain C2I28_22775 PF04229 GrpB protein C2I28_22780 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C2I28_22780 PF02770 Acyl-CoA dehydrogenase, middle domain C2I28_22780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C2I28_22795 PF10676 Spore germination protein gerPA/gerPF C2I28_22800 PF10676 Spore germination protein gerPA/gerPF C2I28_22820 PF00005 ABC transporter C2I28_22825 PF01032 FecCD transport family C2I28_22830 PF07685 CobB/CobQ-like glutamine amidotransferase domain C2I28_22830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C2I28_22840 PF13520 Amino acid permease C2I28_22860 PF01380 SIS domain C2I28_22870 PF00356 Bacterial regulatory proteins, lacI family C2I28_22880 PF07690 Major Facilitator Superfamily C2I28_22885 PF00294 pfkB family carbohydrate kinase C2I28_22900 PF01593 Flavin containing amine oxidoreductase C2I28_22905 PF00535 Glycosyl transferase family 2 C2I28_22925 PF13386 Cytochrome C biogenesis protein transmembrane region C2I28_22930 PF01774 UreD urease accessory protein C2I28_22935 PF02492 CobW/HypB/UreG, nucleotide-binding domain C2I28_22940 PF01730 UreF C2I28_22945 PF05194 UreE urease accessory protein, C-terminal domain C2I28_22945 PF02814 UreE urease accessory protein, N-terminal domain C2I28_22950 PF00449 Urease alpha-subunit, N-terminal domain C2I28_22950 PF01979 Amidohydrolase family C2I28_22955 PF00699 Urease beta subunit C2I28_22960 PF00547 Urease, gamma subunit C2I28_22965 PF00591 Glycosyl transferase family, a/b domain C2I28_22965 PF02885 Glycosyl transferase family, helical bundle domain C2I28_22970 PF00877 NlpC/P60 family C2I28_22970 PF01476 LysM domain C2I28_22975 PF01476 LysM domain C2I28_22975 PF06725 3D domain C2I28_22980 PF00881 Nitroreductase family C2I28_22985 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase C2I28_22990 PF09335 SNARE associated Golgi protein C2I28_22995 PF01522 Polysaccharide deacetylase C2I28_23000 PF01738 Dienelactone hydrolase family C2I28_23005 PF00905 Penicillin binding protein transpeptidase domain C2I28_23005 PF00912 Transglycosylase C2I28_23010 PF01943 Polysaccharide biosynthesis protein C2I28_23015 PF00892 EamA-like transporter family C2I28_23020 PF00155 Aminotransferase class I and II C2I28_23020 PF00392 Bacterial regulatory proteins, gntR family C2I28_23040 PF00005 ABC transporter C2I28_23040 PF00664 ABC transporter transmembrane region C2I28_23065 PF05908 Poly-gamma-glutamate hydrolase C2I28_23075 PF00210 Ferritin-like domain C2I28_23085 PF07875 Coat F domain C2I28_23090 PF01595 Cyclin M transmembrane N-terminal domain C2I28_23090 PF03471 Transporter associated domain C2I28_23090 PF00571 CBS domain C2I28_23105 PF00571 CBS domain C2I28_23105 PF00478 IMP dehydrogenase / GMP reductase domain C2I28_23110 PF10503 Esterase PHB depolymerase C2I28_23115 PF00355 Rieske [2Fe-2S] domain C2I28_23115 PF01266 FAD dependent oxidoreductase C2I28_23125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C2I28_23130 PF02153 Prephenate dehydrogenase C2I28_23130 PF01842 ACT domain C2I28_23135 PF01264 Chorismate synthase C2I28_23140 PF00793 DAHP synthetase I family C2I28_23140 PF01817 Chorismate mutase type II C2I28_23150 PF02417 Chromate transporter C2I28_23155 PF02417 Chromate transporter C2I28_23165 PF00266 Aminotransferase class-V C2I28_23170 PF01546 Peptidase family M20/M25/M40 C2I28_23175 PF07905 Purine catabolism regulatory protein-like family C2I28_23175 PF17853 GGDEF-like domain C2I28_23175 PF13556 PucR C-terminal helix-turn-helix domain C2I28_23180 PF01910 Thiamine-binding protein C2I28_23185 PF00877 NlpC/P60 family C2I28_23185 PF01476 LysM domain C2I28_23190 PF00199 Catalase C2I28_23190 PF06628 Catalase-related immune-responsive C2I28_23200 PF00209 Sodium:neurotransmitter symporter family C2I28_23240 PF01925 Sulfite exporter TauE/SafE C2I28_23245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C2I28_23250 PF10502 Signal peptidase, peptidase S26 C2I28_23260 PF02702 Osmosensitive K+ channel His kinase sensor domain C2I28_23265 PF02669 K+-transporting ATPase, c chain C2I28_23275 PF03814 Potassium-transporting ATPase A subunit C2I28_23285 PF03033 Glycosyltransferase family 28 N-terminal domain C2I28_23285 PF04101 Glycosyltransferase family 28 C-terminal domain C2I28_23295 PF01022 Bacterial regulatory protein, arsR family C2I28_23305 PF00881 Nitroreductase family C2I28_23320 PF04229 GrpB protein C2I28_23325 PF01520 N-acetylmuramoyl-L-alanine amidase C2I28_23325 PF08239 Bacterial SH3 domain C2I28_23330 PF00253 Ribosomal protein S14p/S29e C2I28_23335 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin C2I28_23335 PF18277 AbrB C-terminal domain C2I28_23340 PF05163 DinB family C2I28_23345 PF01938 TRAM domain C2I28_23345 PF05958 tRNA (Uracil-5-)-methyltransferase C2I28_23355 PF02277 Phosphoribosyltransferase C2I28_23360 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_23360 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_23375 PF07690 Major Facilitator Superfamily C2I28_23380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_23380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_23385 PF00781 Diacylglycerol kinase catalytic domain C2I28_23395 PF00285 Citrate synthase, C-terminal domain C2I28_23400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_23400 PF03466 LysR substrate binding domain C2I28_23420 PF13426 PAS domain C2I28_23420 PF01740 STAS domain C2I28_23425 PF01740 STAS domain C2I28_23455 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain C2I28_23455 PF01740 STAS domain C2I28_23460 PF04226 Transglycosylase associated protein C2I28_23470 PF00574 Clp protease C2I28_23485 PF10415 Fumarase C C-terminus C2I28_23485 PF00206 Lyase C2I28_23490 PF00710 Asparaginase, N-terminal C2I28_23490 PF17763 Glutaminase/Asparaginase C-terminal domain C2I28_23495 PF01381 Helix-turn-helix C2I28_23530 PF13520 Amino acid permease C2I28_23535 PF02082 Transcriptional regulator C2I28_23560 PF03949 Malic enzyme, NAD binding domain C2I28_23560 PF00390 Malic enzyme, N-terminal domain C2I28_23565 PF02522 Aminoglycoside 3-N-acetyltransferase C2I28_23575 PF13302 Acetyltransferase (GNAT) domain C2I28_23590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C2I28_23590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C2I28_23595 PF00667 FAD binding domain C2I28_23595 PF00175 Oxidoreductase NAD-binding domain C2I28_23595 PF00258 Flavodoxin C2I28_23605 PF07690 Major Facilitator Superfamily C2I28_23610 PF01047 MarR family C2I28_23615 PF07739 TipAS antibiotic-recognition domain C2I28_23615 PF13411 MerR HTH family regulatory protein C2I28_23620 PF13302 Acetyltransferase (GNAT) domain C2I28_23655 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase C2I28_23675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C2I28_23685 PF00873 AcrB/AcrD/AcrF family C2I28_23695 PF00440 Bacterial regulatory proteins, tetR family C2I28_23700 PF12823 Domain of unknown function (DUF3817) C2I28_23710 PF01979 Amidohydrolase family C2I28_23720 PF03816 Cell envelope-related transcriptional attenuator domain C2I28_23725 PF13302 Acetyltransferase (GNAT) domain C2I28_23735 PF02673 Bacitracin resistance protein BacA C2I28_23745 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C2I28_23750 PF00510 Cytochrome c oxidase subunit III C2I28_23755 PF00115 Cytochrome C and Quinol oxidase polypeptide I C2I28_23760 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C2I28_23785 PF01022 Bacterial regulatory protein, arsR family C2I28_23790 PF00403 Heavy-metal-associated domain C2I28_23795 PF08241 Methyltransferase domain C2I28_23810 PF01520 N-acetylmuramoyl-L-alanine amidase C2I28_23810 PF05036 Sporulation related domain C2I28_23815 PF01810 LysE type translocator C2I28_23820 PF13520 Amino acid permease C2I28_23835 PF04203 Sortase domain C2I28_23840 PF01925 Sulfite exporter TauE/SafE C2I28_23845 PF13302 Acetyltransferase (GNAT) domain C2I28_23850 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) C2I28_23860 PF00107 Zinc-binding dehydrogenase C2I28_23860 PF16884 N-terminal domain of oxidoreductase C2I28_23885 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_23885 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_23900 PF02600 Disulfide bond formation protein DsbB C2I28_23905 PF13462 Thioredoxin C2I28_23910 PF01435 Peptidase family M48 C2I28_23955 PF00440 Bacterial regulatory proteins, tetR family C2I28_23960 PF00893 Small Multidrug Resistance protein C2I28_23965 PF16658 Class II release factor RF3, C-terminal domain C2I28_23965 PF03144 Elongation factor Tu domain 2 C2I28_23965 PF00009 Elongation factor Tu GTP binding domain C2I28_23970 PF00313 'Cold-shock' DNA-binding domain C2I28_23975 PF04239 Protein of unknown function (DUF421) C2I28_23990 PF13460 NAD(P)H-binding C2I28_24015 PF01497 Periplasmic binding protein C2I28_24020 PF00005 ABC transporter C2I28_24025 PF01032 FecCD transport family C2I28_24030 PF01032 FecCD transport family C2I28_24035 PF07486 Cell Wall Hydrolase C2I28_24055 PF02525 Flavodoxin-like fold C2I28_24060 PF10502 Signal peptidase, peptidase S26 C2I28_24090 PF03591 AzlC protein C2I28_24095 PF01381 Helix-turn-helix C2I28_24095 PF07883 Cupin domain C2I28_24100 PF03741 Integral membrane protein TerC family C2I28_24105 PF13407 Periplasmic binding protein domain C2I28_24105 PF00356 Bacterial regulatory proteins, lacI family C2I28_24110 PF02082 Transcriptional regulator C2I28_24130 PF07486 Cell Wall Hydrolase C2I28_24135 PF01872 RibD C-terminal domain C2I28_24145 PF00258 Flavodoxin C2I28_24145 PF00667 FAD binding domain C2I28_24145 PF00175 Oxidoreductase NAD-binding domain C2I28_24145 PF00067 Cytochrome P450 C2I28_24150 PF00440 Bacterial regulatory proteins, tetR family C2I28_24150 PF16295 Tetracyclin repressor-like, C-terminal domain C2I28_24160 PF05067 Manganese containing catalase C2I28_24165 PF12652 CotJB protein C2I28_24170 PF11007 Spore coat associated protein JA (CotJA) C2I28_24180 PF01810 LysE type translocator C2I28_24185 PF02311 AraC-like ligand binding domain C2I28_24185 PF12833 Helix-turn-helix domain C2I28_24190 PF07730 Histidine kinase C2I28_24190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_24190 PF13492 GAF domain C2I28_24195 PF00072 Response regulator receiver domain C2I28_24195 PF00196 Bacterial regulatory proteins, luxR family C2I28_24210 PF14040 Deoxyribonuclease NucA/NucB C2I28_24230 PF03033 Glycosyltransferase family 28 N-terminal domain C2I28_24230 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase C2I28_24240 PF00923 Transaldolase/Fructose-6-phosphate aldolase C2I28_24245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C2I28_24245 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain C2I28_24250 PF02780 Transketolase, C-terminal domain C2I28_24250 PF00456 Transketolase, thiamine diphosphate binding domain C2I28_24250 PF02779 Transketolase, pyrimidine binding domain C2I28_24255 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain C2I28_24255 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain C2I28_24275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_24290 PF00005 ABC transporter C2I28_24295 PF02687 FtsX-like permease family C2I28_24300 PF00512 His Kinase A (phospho-acceptor) domain C2I28_24300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_24300 PF00672 HAMP domain C2I28_24305 PF00072 Response regulator receiver domain C2I28_24305 PF00486 Transcriptional regulatory protein, C terminal C2I28_24310 PF02567 Phenazine biosynthesis-like protein C2I28_24325 PF13426 PAS domain C2I28_24325 PF13188 PAS domain C2I28_24325 PF00989 PAS fold C2I28_24325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_24325 PF00512 His Kinase A (phospho-acceptor) domain C2I28_24330 PF13302 Acetyltransferase (GNAT) domain C2I28_24355 PF00248 Aldo/keto reductase family C2I28_24365 PF00892 EamA-like transporter family C2I28_24370 PF12833 Helix-turn-helix domain C2I28_24370 PF02311 AraC-like ligand binding domain C2I28_24385 PF00741 Gas vesicle protein C2I28_24390 PF00741 Gas vesicle protein C2I28_24390 PF05121 Gas vesicle protein K C2I28_24395 PF00741 Gas vesicle protein C2I28_24415 PF07728 AAA domain (dynein-related subfamily) C2I28_24425 PF00741 Gas vesicle protein C2I28_24440 PF00741 Gas vesicle protein C2I28_24445 PF11181 Heat induced stress protein YflT C2I28_24445 PF09557 Domain of unknown function (DUF2382) C2I28_24455 PF03466 LysR substrate binding domain C2I28_24455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_24465 PF00375 Sodium:dicarboxylate symporter family C2I28_24470 PF08274 PhnA Zinc-Ribbon C2I28_24470 PF03831 PhnA domain C2I28_24505 PF12146 Serine aminopeptidase, S33 C2I28_24505 PF13026 Protein of unknown function (DUF3887) C2I28_24515 PF00890 FAD binding domain C2I28_24515 PF02910 Fumarate reductase flavoprotein C-term C2I28_24520 PF07690 Major Facilitator Superfamily C2I28_24525 PF13302 Acetyltransferase (GNAT) domain C2I28_24535 PF07687 Peptidase dimerisation domain C2I28_24535 PF01546 Peptidase family M20/M25/M40 C2I28_24540 PF00296 Luciferase-like monooxygenase C2I28_24545 PF00486 Transcriptional regulatory protein, C terminal C2I28_24545 PF00072 Response regulator receiver domain C2I28_24550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_24555 PF00005 ABC transporter C2I28_24570 PF01738 Dienelactone hydrolase family C2I28_24575 PF00155 Aminotransferase class I and II C2I28_24590 PF01925 Sulfite exporter TauE/SafE C2I28_24595 PF01206 Sulfurtransferase TusA C2I28_24600 PF00753 Metallo-beta-lactamase superfamily C2I28_24600 PF00581 Rhodanese-like domain C2I28_24605 PF01206 Sulfurtransferase TusA C2I28_24605 PF00581 Rhodanese-like domain C2I28_24615 PF00581 Rhodanese-like domain C2I28_24615 PF12368 Rhodanase C-terminal C2I28_24615 PF17773 UPF0176 acylphosphatase like domain C2I28_24620 PF13686 DsrE/DsrF/DrsH-like family C2I28_24625 PF01206 Sulfurtransferase TusA C2I28_24630 PF02583 Metal-sensitive transcriptional repressor C2I28_24660 PF03466 LysR substrate binding domain C2I28_24660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_24685 PF00392 Bacterial regulatory proteins, gntR family C2I28_24685 PF07702 UTRA domain C2I28_24690 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C2I28_24690 PF00367 phosphotransferase system, EIIB C2I28_24690 PF02378 Phosphotransferase system, EIIC C2I28_24695 PF00232 Glycosyl hydrolase family 1 C2I28_24700 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin C2I28_24705 PF05901 Excalibur calcium-binding domain C2I28_24720 PF01810 LysE type translocator C2I28_24725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C2I28_24735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_24735 PF03466 LysR substrate binding domain C2I28_24740 PF07690 Major Facilitator Superfamily C2I28_24745 PF01810 LysE type translocator C2I28_24750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_24750 PF03466 LysR substrate binding domain C2I28_24755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_24770 PF00990 Diguanylate cyclase, GGDEF domain C2I28_24770 PF17151 Periplasmic sensor domain C2I28_24775 PF12706 Beta-lactamase superfamily domain C2I28_24780 PF13170 Protein of unknown function (DUF4003) C2I28_24790 PF00881 Nitroreductase family C2I28_24795 PF00171 Aldehyde dehydrogenase family C2I28_24810 PF04011 LemA family C2I28_24815 PF01522 Polysaccharide deacetylase C2I28_24820 PF00535 Glycosyl transferase family 2 C2I28_24820 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 C2I28_24830 PF01638 HxlR-like helix-turn-helix C2I28_24835 PF02525 Flavodoxin-like fold C2I28_24840 PF02525 Flavodoxin-like fold C2I28_24845 PF13302 Acetyltransferase (GNAT) domain C2I28_24860 PF00264 Common central domain of tyrosinase C2I28_24870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_24875 PF04299 Putative FMN-binding domain C2I28_24890 PF00561 alpha/beta hydrolase fold C2I28_24905 PF07308 Protein of unknown function (DUF1456) C2I28_24915 PF06874 Firmicute fructose-1,6-bisphosphatase C2I28_24920 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) C2I28_24920 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 C2I28_24925 PF00313 'Cold-shock' DNA-binding domain C2I28_24930 PF00313 'Cold-shock' DNA-binding domain C2I28_24935 PF07690 Major Facilitator Superfamily C2I28_24945 PF00291 Pyridoxal-phosphate dependent enzyme C2I28_24955 PF07690 Major Facilitator Superfamily C2I28_24960 PF00392 Bacterial regulatory proteins, gntR family C2I28_24960 PF07729 FCD domain C2I28_25005 PF02126 Phosphotriesterase family C2I28_25010 PF01740 STAS domain C2I28_25010 PF00916 Sulfate permease family C2I28_25025 PF01969 Protein of unknown function DUF111 C2I28_25030 PF01969 Protein of unknown function DUF111 C2I28_25035 PF00731 AIR carboxylase C2I28_25040 PF02540 NAD synthase C2I28_25045 PF00106 short chain dehydrogenase C2I28_25055 PF02614 Glucuronate isomerase C2I28_25060 PF00480 ROK family C2I28_25085 PF00005 ABC transporter C2I28_25095 PF02096 60Kd inner membrane protein C2I28_25115 PF01098 Cell cycle protein C2I28_25160 PF05139 Erythromycin esterase C2I28_25175 PF03992 Antibiotic biosynthesis monooxygenase C2I28_25185 PF00082 Subtilase family C2I28_25190 PF00561 alpha/beta hydrolase fold C2I28_25195 PF13426 PAS domain C2I28_25195 PF00512 His Kinase A (phospho-acceptor) domain C2I28_25195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_25195 PF00672 HAMP domain C2I28_25200 PF00486 Transcriptional regulatory protein, C terminal C2I28_25200 PF00072 Response regulator receiver domain C2I28_25215 PF00005 ABC transporter C2I28_25230 PF01740 STAS domain C2I28_25230 PF00916 Sulfate permease family C2I28_25240 PF02796 Helix-turn-helix domain of resolvase C2I28_25240 PF00239 Resolvase, N terminal domain C2I28_25245 PF04239 Protein of unknown function (DUF421) C2I28_25265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C2I28_25265 PF03466 LysR substrate binding domain C2I28_25280 PF00381 PTS HPr component phosphorylation site C2I28_25285 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_25285 PF00107 Zinc-binding dehydrogenase C2I28_25290 PF13411 MerR HTH family regulatory protein C2I28_25305 PF07883 Cupin domain C2I28_25325 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain C2I28_25325 PF01740 STAS domain C2I28_25330 PF00313 'Cold-shock' DNA-binding domain C2I28_25345 PF17202 Single cache domain 3 C2I28_25345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C2I28_25345 PF00672 HAMP domain C2I28_25350 PF00990 Diguanylate cyclase, GGDEF domain C2I28_25350 PF00563 EAL domain C2I28_25350 PF13426 PAS domain C2I28_25355 PF02557 D-alanyl-D-alanine carboxypeptidase C2I28_25375 PF01544 CorA-like Mg2+ transporter protein C2I28_25380 PF01740 STAS domain C2I28_25415 PF08713 DNA alkylation repair enzyme C2I28_25420 PF00583 Acetyltransferase (GNAT) family C2I28_25425 PF03845 Spore germination protein C2I28_25445 PF07729 FCD domain C2I28_25445 PF00392 Bacterial regulatory proteins, gntR family C2I28_25465 PF06912 Protein of unknown function (DUF1275) C2I28_25475 PF08220 DeoR-like helix-turn-helix domain C2I28_25475 PF00455 DeoR C terminal sensor domain C2I28_25490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C2I28_25490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C2I28_25510 PF01810 LysE type translocator C2I28_25535 PF00583 Acetyltransferase (GNAT) family C2I28_25535 PF00795 Carbon-nitrogen hydrolase C2I28_25545 PF08267 Cobalamin-independent synthase, N-terminal domain C2I28_25545 PF01717 Cobalamin-independent synthase, Catalytic domain C2I28_25565 PF00083 Sugar (and other) transporter C2I28_25570 PF11762 L-arabinose isomerase C-terminal domain C2I28_25570 PF02610 L-arabinose isomerase C2I28_25575 PF00596 Class II Aldolase and Adducin N-terminal domain C2I28_25580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C2I28_25580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C2I28_25585 PF00392 Bacterial regulatory proteins, gntR family C2I28_25610 PF02421 Ferrous iron transport protein B C2I28_25610 PF07664 Ferrous iron transport protein B C terminus C2I28_25610 PF07670 Nucleoside recognition C2I28_25610 PF17910 FeoB cytosolic helical domain C2I28_25615 PF07670 Nucleoside recognition C2I28_25615 PF02421 Ferrous iron transport protein B C2I28_25615 PF17910 FeoB cytosolic helical domain C2I28_25615 PF07664 Ferrous iron transport protein B C terminus C2I28_25620 PF07670 Nucleoside recognition C2I28_25620 PF02421 Ferrous iron transport protein B C2I28_25620 PF17910 FeoB cytosolic helical domain C2I28_25620 PF07664 Ferrous iron transport protein B C terminus C2I28_25620 PF04023 FeoA domain C2I28_25635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C2I28_25645 PF13115 YtkA-like C2I28_25655 PF01047 MarR family C2I28_25695 PF01476 LysM domain C2I28_25695 PF00877 NlpC/P60 family C2I28_25700 PF03475 3-alpha domain C2I28_25700 PF03473 MOSC domain C2I28_25710 PF07662 Na+ dependent nucleoside transporter C-terminus C2I28_25710 PF01773 Na+ dependent nucleoside transporter N-terminus C2I28_25720 PF02447 GntP family permease C2I28_25725 PF00920 Dehydratase family C2I28_25730 PF00701 Dihydrodipicolinate synthetase family C2I28_25735 PF07690 Major Facilitator Superfamily C2I28_25740 PF00171 Aldehyde dehydrogenase family C2I28_25750 PF01614 Bacterial transcriptional regulator C2I28_25750 PF09339 IclR helix-turn-helix domain C2I28_25760 PF11611 Domain of unknown function (DUF4352) C2I28_25800 PF08818 Domain of unknown function (DU1801) C2I28_25805 PF08818 Domain of unknown function (DU1801) C2I28_25855 PF07690 Major Facilitator Superfamily C2I28_25915 PF00313 'Cold-shock' DNA-binding domain C2I28_25930 PF04259 Small, acid-soluble spore protein, gamma-type C2I28_25935 PF00107 Zinc-binding dehydrogenase C2I28_25935 PF08240 Alcohol dehydrogenase GroES-like domain C2I28_25945 PF01638 HxlR-like helix-turn-helix C2I28_25970 PF06445 GyrI-like small molecule binding domain C2I28_25970 PF13411 MerR HTH family regulatory protein C2I28_25980 PF07690 Major Facilitator Superfamily C2I28_25985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C2I28_25985 PF13378 Enolase C-terminal domain-like C2I28_25995 PF00294 pfkB family carbohydrate kinase C2I28_26000 PF01614 Bacterial transcriptional regulator C2I28_26000 PF09339 IclR helix-turn-helix domain C2I28_26005 PF01061 ABC-2 type transporter C2I28_26010 PF13732 Domain of unknown function (DUF4162) C2I28_26010 PF00005 ABC transporter C2I28_26030 PF00171 Aldehyde dehydrogenase family C2I28_26035 PF07702 UTRA domain C2I28_26035 PF00392 Bacterial regulatory proteins, gntR family C2I28_26045 PF01055 Glycosyl hydrolases family 31 C2I28_26055 PF00923 Transaldolase/Fructose-6-phosphate aldolase C2I28_26085 PF08281 Sigma-70, region 4 C2I28_26085 PF04542 Sigma-70 region 2 C2I28_26090 PF00672 HAMP domain C2I28_26090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_26090 PF00512 His Kinase A (phospho-acceptor) domain C2I28_26095 PF00072 Response regulator receiver domain C2I28_26095 PF00486 Transcriptional regulatory protein, C terminal C2I28_26100 PF00005 ABC transporter C2I28_26100 PF02687 FtsX-like permease family C2I28_26100 PF12704 MacB-like periplasmic core domain C2I28_26105 PF12704 MacB-like periplasmic core domain C2I28_26105 PF00005 ABC transporter C2I28_26105 PF02687 FtsX-like permease family C2I28_26115 PF04235 Protein of unknown function (DUF418) C2I28_26135 PF10502 Signal peptidase, peptidase S26 C2I28_26165 PF01381 Helix-turn-helix C2I28_26175 PF01037 Lrp/AsnC ligand binding domain C2I28_26180 PF00561 alpha/beta hydrolase fold C2I28_26220 PF13419 Haloacid dehalogenase-like hydrolase C2I28_26225 PF00989 PAS fold C2I28_26225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_26225 PF00512 His Kinase A (phospho-acceptor) domain C2I28_26230 PF00072 Response regulator receiver domain C2I28_26230 PF08769 Sporulation initiation factor Spo0A C terminal C2I28_26275 PF02534 Type IV secretory system Conjugative DNA transfer C2I28_26305 PF00877 NlpC/P60 family C2I28_26320 PF13419 Haloacid dehalogenase-like hydrolase C2I28_26325 PF00989 PAS fold C2I28_26325 PF00512 His Kinase A (phospho-acceptor) domain C2I28_26325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_26330 PF08769 Sporulation initiation factor Spo0A C terminal C2I28_26330 PF00072 Response regulator receiver domain C2I28_26375 PF02534 Type IV secretory system Conjugative DNA transfer C2I28_26405 PF00877 NlpC/P60 family C2I28_26445 PF13154 Protein of unknown function (DUF3991) C2I28_26455 PF11208 Protein of unknown function (DUF2992) C2I28_26460 PF00588 SpoU rRNA Methylase family C2I28_26460 PF08032 RNA 2'-O ribose methyltransferase substrate binding C2I28_26465 PF03079 ARD/ARD' family C2I28_26480 PF00109 Beta-ketoacyl synthase, N-terminal domain C2I28_26480 PF02801 Beta-ketoacyl synthase, C-terminal domain C2I28_26485 PF02801 Beta-ketoacyl synthase, C-terminal domain C2I28_26485 PF00109 Beta-ketoacyl synthase, N-terminal domain C2I28_26490 PF00550 Phosphopantetheine attachment site C2I28_26495 PF08241 Methyltransferase domain C2I28_26500 PF01648 4'-phosphopantetheinyl transferase superfamily C2I28_26505 PF13193 AMP-binding enzyme C-terminal domain C2I28_26505 PF00501 AMP-binding enzyme C2I28_26525 PF03364 Polyketide cyclase / dehydrase and lipid transport C2I28_26530 PF00561 alpha/beta hydrolase fold C2I28_26545 PF08241 Methyltransferase domain C2I28_26550 PF01098 Cell cycle protein C2I28_26560 PF04542 Sigma-70 region 2 C2I28_26560 PF08281 Sigma-70, region 4 C2I28_26565 PF01381 Helix-turn-helix C2I28_26580 PF01098 Cell cycle protein C2I28_26700 PF00005 ABC transporter C2I28_26715 PF11798 IMS family HHH motif C2I28_26715 PF11799 impB/mucB/samB family C-terminal domain C2I28_26715 PF00817 impB/mucB/samB family C2I28_26720 PF08863 YolD-like protein C2I28_26740 PF02447 GntP family permease C2I28_26745 PF00392 Bacterial regulatory proteins, gntR family C2I28_26745 PF07702 UTRA domain C2I28_26755 PF07071 KDGP aldolase C2I28_26760 PF03841 L-seryl-tRNA selenium transferase C2I28_26765 PF01979 Amidohydrolase family C2I28_26795 PF18277 AbrB C-terminal domain C2I28_26795 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin C2I28_26810 PF00216 Bacterial DNA-binding protein C2I28_26815 PF00269 Small, acid-soluble spore proteins, alpha/beta type C2I28_26840 PF01810 LysE type translocator C2I28_26850 PF00202 Aminotransferase class-III C2I28_26860 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain C2I28_26860 PF01740 STAS domain C2I28_26925 PF04471 Restriction endonuclease C2I28_26925 PF14338 Mrr N-terminal domain C2I28_26945 PF08864 UPF0302 domain C2I28_26945 PF08858 IDEAL domain C2I28_26955 PF01595 Cyclin M transmembrane N-terminal domain C2I28_26955 PF00571 CBS domain C2I28_26955 PF03471 Transporter associated domain C2I28_26970 PF07690 Major Facilitator Superfamily C2I28_26975 PF01022 Bacterial regulatory protein, arsR family C2I28_26995 PF10898 Protein of unknown function (DUF2716) C2I28_27015 PF00753 Metallo-beta-lactamase superfamily C2I28_27015 PF13567 Domain of unknown function (DUF4131) C2I28_27015 PF03772 Competence protein C2I28_27070 PF13419 Haloacid dehalogenase-like hydrolase C2I28_27075 PF00989 PAS fold C2I28_27075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_27075 PF00512 His Kinase A (phospho-acceptor) domain C2I28_27080 PF08769 Sporulation initiation factor Spo0A C terminal C2I28_27080 PF00072 Response regulator receiver domain C2I28_27125 PF02534 Type IV secretory system Conjugative DNA transfer C2I28_27170 PF13419 Haloacid dehalogenase-like hydrolase C2I28_27175 PF00512 His Kinase A (phospho-acceptor) domain C2I28_27175 PF00989 PAS fold C2I28_27175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C2I28_27180 PF08769 Sporulation initiation factor Spo0A C terminal C2I28_27180 PF00072 Response regulator receiver domain C2I28_27225 PF02534 Type IV secretory system Conjugative DNA transfer C2I28_27300 PF02899 Phage integrase, N-terminal SAM-like domain C2I28_27300 PF00589 Phage integrase family C2I28_27305 PF01051 Initiator Replication protein C2I28_27315 PF03372 Endonuclease/Exonuclease/phosphatase family C2I28_27325 PF07552 Spore Coat Protein X and V domain C2I28_27375 PF13439 Glycosyltransferase Family 4 C2I28_27375 PF00534 Glycosyl transferases group 1 C2I28_27400 PF07552 Spore Coat Protein X and V domain C2I28_27415 PF00535 Glycosyl transferase family 2 C2I28_27430 PF00535 Glycosyl transferase family 2 C2I28_27440 PF00534 Glycosyl transferases group 1 C2I28_27440 PF13439 Glycosyltransferase Family 4 C2I28_27445 PF00535 Glycosyl transferase family 2 C2I28_27460 PF16363 GDP-mannose 4,6 dehydratase C2I28_27480 PF02719 Polysaccharide biosynthesis protein C2I28_27485 PF02350 UDP-N-acetylglucosamine 2-epimerase C2I28_27500 PF00082 Subtilase family C2I28_27525 PF08031 Berberine and berberine like C2I28_27525 PF01565 FAD binding domain C2I28_27635 PF00239 Resolvase, N terminal domain C2I28_27635 PF02796 Helix-turn-helix domain of resolvase C2I28_27640 PF08858 IDEAL domain C2I28_27640 PF08864 UPF0302 domain C2I28_27700 PF00589 Phage integrase family C2I28_27700 PF02899 Phage integrase, N-terminal SAM-like domain C2I28_27705 PF01051 Initiator Replication protein