locus-tag class description ABE28_000015 PF14175 YaaC-like Protein ABE28_000020 PF00571 CBS domain ABE28_000020 PF00478 IMP dehydrogenase / GMP reductase domain ABE28_000025 PF07943 Penicillin-binding protein 5, C-terminal domain ABE28_000025 PF00768 D-alanyl-D-alanine carboxypeptidase ABE28_000030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABE28_000030 PF02403 Seryl-tRNA synthetase N-terminal domain ABE28_000040 PF01712 Deoxynucleoside kinase ABE28_000045 PF01712 Deoxynucleoside kinase ABE28_000050 PF00857 Isochorismatase family ABE28_000055 PF14437 MafB19-like deaminase ABE28_000065 PF12169 DNA polymerase III subunits gamma and tau domain III ABE28_000070 PF02575 YbaB/EbfC DNA-binding family ABE28_000075 PF13662 Toprim domain ABE28_000075 PF02132 RecR protein ABE28_000080 PF10704 Protein of unknown function (DUF2508) ABE28_000085 PF07441 SigmaK-factor processing regulatory protein BofA ABE28_000105 PF10764 Inhibitor of sigma-G Gin ABE28_000110 PF01276 Orn/Lys/Arg decarboxylase, major domain ABE28_000110 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ABE28_000115 PF02223 Thymidylate kinase ABE28_000120 PF06153 Cyclic-di-AMP receptor ABE28_000125 PF03885 Protein of unknown function (DUF327) ABE28_000130 PF09115 DNA polymerase III, delta subunit, C terminal ABE28_000135 PF04468 PSP1 C-terminal conserved region ABE28_000140 PF06156 Initiation control protein YabA ABE28_000145 PF05175 Methyltransferase small domain ABE28_000150 PF01541 GIY-YIG catalytic domain ABE28_000155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABE28_000160 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ABE28_000160 PF18277 AbrB C-terminal domain ABE28_000165 PF01588 Putative tRNA binding domain ABE28_000165 PF09334 tRNA synthetases class I (M) ABE28_000165 PF08264 Anticodon-binding domain of tRNA ABE28_000170 PF01026 TatD related DNase ABE28_000175 PF03990 G5-linked-Ubiquitin-like domain ABE28_000175 PF06725 3D domain ABE28_000175 PF07501 G5 domain ABE28_000180 PF13331 Domain of unknown function (DUF4093) ABE28_000180 PF13662 Toprim domain ABE28_000185 PF00398 Ribosomal RNA adenine dimethylase ABE28_000190 PF05582 YabG peptidase U57 ABE28_000195 PF06257 Biofilm formation stimulator VEG ABE28_000200 PF00269 Small, acid-soluble spore proteins, alpha/beta type ABE28_000205 PF08544 GHMP kinases C terminal ABE28_000205 PF00288 GHMP kinases N terminal domain ABE28_000210 PF00156 Phosphoribosyl transferase domain ABE28_000210 PF09182 Bacterial purine repressor, N-terminal ABE28_000215 PF01042 Endoribonuclease L-PSP ABE28_000220 PF04026 SpoVG ABE28_000225 PF00132 Bacterial transferase hexapeptide (six repeats) ABE28_000225 PF00483 Nucleotidyl transferase ABE28_000230 PF14572 Phosphoribosyl synthetase-associated domain ABE28_000230 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABE28_000240 PF09084 NMT1/THI5 like ABE28_000245 PF00296 Luciferase-like monooxygenase ABE28_000250 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_000255 PF00005 ABC transporter ABE28_000260 PF01386 Ribosomal L25p family ABE28_000260 PF14693 Ribosomal protein TL5, C-terminal domain ABE28_000265 PF01195 Peptidyl-tRNA hydrolase ABE28_000270 PF10955 Protein of unknown function (DUF2757) ABE28_000275 PF02559 CarD-like/TRCF domain ABE28_000275 PF00270 DEAD/DEAH box helicase ABE28_000275 PF00271 Helicase conserved C-terminal domain ABE28_000275 PF03461 TRCF domain ABE28_000275 PF17757 UvrB interaction domain ABE28_000280 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ABE28_000280 PF15714 Stage V sporulation protein T C-terminal, transcription factor ABE28_000285 PF14667 Polysaccharide biosynthesis C-terminal domain ABE28_000285 PF01943 Polysaccharide biosynthesis protein ABE28_000290 PF03819 MazG nucleotide pyrophosphohydrolase domain ABE28_000290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABE28_000295 PF01479 S4 domain ABE28_000300 PF07873 YabP family ABE28_000305 PF09578 Spore cortex protein YabQ (Spore_YabQ) ABE28_000310 PF04977 Septum formation initiator ABE28_000315 PF00575 S1 RNA binding domain ABE28_000330 PF07228 Stage II sporulation protein E (SpoIIE) ABE28_000335 PF00092 von Willebrand factor type A domain ABE28_000340 PF00069 Protein kinase domain ABE28_000345 PF11734 TilS substrate C-terminal domain ABE28_000345 PF09179 TilS substrate binding domain ABE28_000345 PF01171 PP-loop family ABE28_000360 PF03309 Type III pantothenate kinase ABE28_000365 PF01430 Hsp33 protein ABE28_000370 PF13145 PPIC-type PPIASE domain ABE28_000375 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_000380 PF00809 Pterin binding enzyme ABE28_000385 PF02152 Dihydroneopterin aldolase ABE28_000390 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABE28_000395 PF01381 Helix-turn-helix ABE28_000400 PF01207 Dihydrouridine synthase (Dus) ABE28_000405 PF00152 tRNA synthetases class II (D, K and N) ABE28_000405 PF01336 OB-fold nucleic acid binding domain ABE28_000425 PF05848 CtsR N-terminal HTH domain ABE28_000425 PF17727 CtsR C-terminal dimerization domain ABE28_000430 PF02151 UvrB/uvrC motif ABE28_000435 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain ABE28_000440 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_000440 PF07724 AAA domain (Cdc48 subfamily) ABE28_000440 PF10431 C-terminal, D2-small domain, of ClpB protein ABE28_000440 PF02861 Clp amino terminal domain, pathogenicity island component ABE28_000440 PF17871 AAA lid domain ABE28_000445 PF18073 Rubredoxin metal binding domain ABE28_000450 PF02457 DisA bacterial checkpoint controller nucleotide-binding ABE28_000450 PF10635 DisA bacterial checkpoint controller linker region ABE28_000460 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABE28_000465 PF02542 YgbB family ABE28_000470 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABE28_000475 PF00132 Bacterial transferase hexapeptide (six repeats) ABE28_000475 PF06426 Serine acetyltransferase, N-terminal ABE28_000480 PF01406 tRNA synthetases class I (C) catalytic domain ABE28_000480 PF09190 DALR domain ABE28_000485 PF00636 Ribonuclease III domain ABE28_000490 PF00588 SpoU rRNA Methylase family ABE28_000490 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABE28_000495 PF05991 YacP-like NYN domain ABE28_000500 PF04542 Sigma-70 region 2 ABE28_000500 PF08281 Sigma-70, region 4 ABE28_000505 PF00471 Ribosomal protein L33 ABE28_000510 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABE28_000515 PF02357 Transcription termination factor nusG ABE28_000515 PF00467 KOW motif ABE28_000520 PF00298 Ribosomal protein L11, RNA binding domain ABE28_000520 PF03946 Ribosomal protein L11, N-terminal domain ABE28_000525 PF00687 Ribosomal protein L1p/L10e family ABE28_000530 PF00466 Ribosomal protein L10 ABE28_000535 PF16320 Ribosomal protein L7/L12 dimerisation domain ABE28_000535 PF00542 Ribosomal protein L7/L12 C-terminal domain ABE28_000540 PF05175 Methyltransferase small domain ABE28_000545 PF04560 RNA polymerase Rpb2, domain 7 ABE28_000545 PF04565 RNA polymerase Rpb2, domain 3 ABE28_000545 PF00562 RNA polymerase Rpb2, domain 6 ABE28_000545 PF04561 RNA polymerase Rpb2, domain 2 ABE28_000545 PF10385 RNA polymerase beta subunit external 1 domain ABE28_000545 PF04563 RNA polymerase beta subunit ABE28_000550 PF04997 RNA polymerase Rpb1, domain 1 ABE28_000550 PF00623 RNA polymerase Rpb1, domain 2 ABE28_000550 PF04998 RNA polymerase Rpb1, domain 5 ABE28_000550 PF04983 RNA polymerase Rpb1, domain 3 ABE28_000550 PF05000 RNA polymerase Rpb1, domain 4 ABE28_000555 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ABE28_000560 PF00164 Ribosomal protein S12/S23 ABE28_000565 PF00177 Ribosomal protein S7p/S5e ABE28_000570 PF00679 Elongation factor G C-terminus ABE28_000570 PF00009 Elongation factor Tu GTP binding domain ABE28_000570 PF03144 Elongation factor Tu domain 2 ABE28_000570 PF03764 Elongation factor G, domain IV ABE28_000570 PF14492 Elongation Factor G, domain II ABE28_000575 PF00009 Elongation factor Tu GTP binding domain ABE28_000575 PF03143 Elongation factor Tu C-terminal domain ABE28_000575 PF03144 Elongation factor Tu domain 2 ABE28_000580 PF00338 Ribosomal protein S10p/S20e ABE28_000585 PF00297 Ribosomal protein L3 ABE28_000590 PF00573 Ribosomal protein L4/L1 family ABE28_000595 PF00276 Ribosomal protein L23 ABE28_000600 PF00181 Ribosomal Proteins L2, RNA binding domain ABE28_000600 PF03947 Ribosomal Proteins L2, C-terminal domain ABE28_000605 PF00203 Ribosomal protein S19 ABE28_000610 PF00237 Ribosomal protein L22p/L17e ABE28_000615 PF00189 Ribosomal protein S3, C-terminal domain ABE28_000615 PF07650 KH domain ABE28_000620 PF00252 Ribosomal protein L16p/L10e ABE28_000625 PF00831 Ribosomal L29 protein ABE28_000630 PF00366 Ribosomal protein S17 ABE28_000635 PF00238 Ribosomal protein L14p/L23e ABE28_000640 PF00467 KOW motif ABE28_000640 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABE28_000645 PF00673 ribosomal L5P family C-terminus ABE28_000645 PF00281 Ribosomal protein L5 ABE28_000650 PF00253 Ribosomal protein S14p/S29e ABE28_000655 PF00410 Ribosomal protein S8 ABE28_000660 PF00347 Ribosomal protein L6 ABE28_000665 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABE28_000670 PF00333 Ribosomal protein S5, N-terminal domain ABE28_000670 PF03719 Ribosomal protein S5, C-terminal domain ABE28_000675 PF00327 Ribosomal protein L30p/L7e ABE28_000680 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABE28_000685 PF00344 SecY translocase ABE28_000690 PF05191 Adenylate kinase, active site lid ABE28_000695 PF01176 Translation initiation factor 1A / IF-1 ABE28_000700 PF00444 Ribosomal protein L36 ABE28_000705 PF00416 Ribosomal protein S13/S18 ABE28_000710 PF00411 Ribosomal protein S11 ABE28_000715 PF01000 RNA polymerase Rpb3/RpoA insert domain ABE28_000715 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABE28_000715 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABE28_000720 PF01196 Ribosomal protein L17 ABE28_000725 PF00005 ABC transporter ABE28_000730 PF00005 ABC transporter ABE28_000740 PF01416 tRNA pseudouridine synthase ABE28_000750 PF00380 Ribosomal protein S9/S16 ABE28_000755 PF07690 Major Facilitator Superfamily ABE28_000775 PF01520 N-acetylmuramoyl-L-alanine amidase ABE28_000780 PF10609 NUBPL iron-transfer P-loop NTPase ABE28_000785 PF17898 Spore germination GerD central core domain ABE28_000790 PF14089 KinB-signalling pathway activation in sporulation ABE28_000795 PF01522 Polysaccharide deacetylase ABE28_000865 PF00491 Arginase family ABE28_000875 PF08281 Sigma-70, region 4 ABE28_000875 PF04542 Sigma-70 region 2 ABE28_000880 PF13490 Putative zinc-finger ABE28_000885 PF02457 DisA bacterial checkpoint controller nucleotide-binding ABE28_000890 PF07949 YbbR-like protein ABE28_000895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABE28_000895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABE28_000895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABE28_000895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABE28_000900 PF01380 SIS domain ABE28_000930 PF00672 HAMP domain ABE28_000930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_000930 PF00512 His Kinase A (phospho-acceptor) domain ABE28_000935 PF00072 Response regulator receiver domain ABE28_000935 PF00486 Transcriptional regulatory protein, C terminal ABE28_000940 PF00005 ABC transporter ABE28_000940 PF00664 ABC transporter transmembrane region ABE28_000945 PF00285 Citrate synthase, C-terminal domain ABE28_000950 PF03972 MmgE/PrpD family ABE28_000960 PF01820 D-ala D-ala ligase N-terminus ABE28_000960 PF07478 D-ala D-ala ligase C-terminus ABE28_000965 PF00672 HAMP domain ABE28_000965 PF02743 Cache domain ABE28_000965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_000970 PF00313 'Cold-shock' DNA-binding domain ABE28_000985 PF04542 Sigma-70 region 2 ABE28_000985 PF08281 Sigma-70, region 4 ABE28_000995 PF01926 50S ribosome-binding GTPase ABE28_000995 PF13167 GTP-binding GTPase N-terminal ABE28_000995 PF16360 GTP-binding GTPase Middle Region ABE28_001005 PF13333 Integrase core domain ABE28_001005 PF00665 Integrase core domain ABE28_001005 PF13276 HTH-like domain ABE28_001010 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_001010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABE28_001015 PF01180 Dihydroorotate dehydrogenase ABE28_001020 PF01979 Amidohydrolase family ABE28_001025 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABE28_001035 PF05651 Putative sugar diacid recognition ABE28_001035 PF13556 PucR C-terminal helix-turn-helix domain ABE28_001035 PF17853 GGDEF-like domain ABE28_001040 PF00781 Diacylglycerol kinase catalytic domain ABE28_001045 PF00999 Sodium/hydrogen exchanger family ABE28_001060 PF08402 TOBE domain ABE28_001060 PF00005 ABC transporter ABE28_001065 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_001070 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_001075 PF13416 Bacterial extracellular solute-binding protein ABE28_001095 PF03176 MMPL family ABE28_001100 PF13580 SIS domain ABE28_001110 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ABE28_001115 PF01979 Amidohydrolase family ABE28_001120 PF02378 Phosphotransferase system, EIIC ABE28_001120 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ABE28_001120 PF00367 phosphotransferase system, EIIB ABE28_001125 PF00005 ABC transporter ABE28_001130 PF01032 FecCD transport family ABE28_001135 PF01032 FecCD transport family ABE28_001140 PF01497 Periplasmic binding protein ABE28_001145 PF00756 Putative esterase ABE28_001150 PF00106 short chain dehydrogenase ABE28_001155 PF00425 chorismate binding enzyme ABE28_001160 PF13193 AMP-binding enzyme C-terminal domain ABE28_001160 PF00501 AMP-binding enzyme ABE28_001165 PF00857 Isochorismatase family ABE28_001165 PF00550 Phosphopantetheine attachment site ABE28_001170 PF00550 Phosphopantetheine attachment site ABE28_001170 PF00668 Condensation domain ABE28_001170 PF13193 AMP-binding enzyme C-terminal domain ABE28_001170 PF00501 AMP-binding enzyme ABE28_001170 PF00975 Thioesterase domain ABE28_001175 PF03621 MbtH-like protein ABE28_001180 PF07690 Major Facilitator Superfamily ABE28_001185 PF01648 4'-phosphopantetheinyl transferase superfamily ABE28_001190 PF07690 Major Facilitator Superfamily ABE28_001200 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_001200 PF01434 Peptidase family M41 ABE28_001200 PF17862 AAA+ lid domain ABE28_001205 PF01327 Polypeptide deformylase ABE28_001215 PF07690 Major Facilitator Superfamily ABE28_001220 PF01047 MarR family ABE28_001225 PF09375 Imelysin ABE28_001230 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABE28_001230 PF04261 Dyp-type peroxidase family ABE28_001235 PF03239 Iron permease FTR1 family ABE28_001240 PF13411 MerR HTH family regulatory protein ABE28_001245 PF00571 CBS domain ABE28_001245 PF03471 Transporter associated domain ABE28_001245 PF01595 Cyclin M transmembrane N-terminal domain ABE28_001250 PF00072 Response regulator receiver domain ABE28_001250 PF01627 Hpt domain ABE28_001250 PF00512 His Kinase A (phospho-acceptor) domain ABE28_001250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_001255 PF01739 CheR methyltransferase, SAM binding domain ABE28_001255 PF03705 CheR methyltransferase, all-alpha domain ABE28_001260 PF13426 PAS domain ABE28_001260 PF07228 Stage II sporulation protein E (SpoIIE) ABE28_001270 PF12146 Serine aminopeptidase, S33 ABE28_001300 PF02899 Phage integrase, N-terminal SAM-like domain ABE28_001300 PF00589 Phage integrase family ABE28_001305 PF00873 AcrB/AcrD/AcrF family ABE28_001310 PF00440 Bacterial regulatory proteins, tetR family ABE28_001315 PF00781 Diacylglycerol kinase catalytic domain ABE28_001330 PF00375 Sodium:dicarboxylate symporter family ABE28_001340 PF07478 D-ala D-ala ligase C-terminus ABE28_001340 PF01820 D-ala D-ala ligase N-terminus ABE28_001345 PF01225 Mur ligase family, catalytic domain ABE28_001345 PF02875 Mur ligase family, glutamate ligase domain ABE28_001345 PF08245 Mur ligase middle domain ABE28_001355 PF00271 Helicase conserved C-terminal domain ABE28_001355 PF00270 DEAD/DEAH box helicase ABE28_001360 PF03703 Bacterial PH domain ABE28_001365 PF03703 Bacterial PH domain ABE28_001370 PF01694 Rhomboid family ABE28_001375 PF01648 4'-phosphopantetheinyl transferase superfamily ABE28_001390 PF01402 Ribbon-helix-helix protein, copG family ABE28_001395 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ABE28_001400 PF08678 Rsbr N terminal ABE28_001400 PF01740 STAS domain ABE28_001405 PF01740 STAS domain ABE28_001410 PF13581 Histidine kinase-like ATPase domain ABE28_001415 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain ABE28_001415 PF07228 Stage II sporulation protein E (SpoIIE) ABE28_001420 PF01740 STAS domain ABE28_001425 PF13581 Histidine kinase-like ATPase domain ABE28_001430 PF04542 Sigma-70 region 2 ABE28_001430 PF04539 Sigma-70 region 3 ABE28_001430 PF04545 Sigma-70, region 4 ABE28_001435 PF07228 Stage II sporulation protein E (SpoIIE) ABE28_001440 PF00575 S1 RNA binding domain ABE28_001440 PF17674 HHH domain ABE28_001440 PF16921 Tex protein YqgF-like domain ABE28_001440 PF09371 Tex-like protein N-terminal domain ABE28_001445 PF10263 SprT-like family ABE28_001525 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABE28_001530 PF00814 Glycoprotease family ABE28_001535 PF00583 Acetyltransferase (GNAT) family ABE28_001540 PF00814 Glycoprotease family ABE28_001545 PF00005 ABC transporter ABE28_001545 PF16326 ABC transporter C-terminal domain ABE28_001545 PF12848 ABC transporter ABE28_001550 PF01967 MoaC family ABE28_001555 PF02629 CoA binding domain ABE28_001555 PF06971 Putative DNA-binding protein N-terminus ABE28_001565 PF02517 CPBP intramembrane metalloprotease ABE28_001570 PF00166 Chaperonin 10 Kd subunit ABE28_001600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABE28_001600 PF13378 Enolase C-terminal domain-like ABE28_001605 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain ABE28_001605 PF00877 NlpC/P60 family ABE28_001615 PF01965 DJ-1/PfpI family ABE28_001625 PF00512 His Kinase A (phospho-acceptor) domain ABE28_001625 PF00072 Response regulator receiver domain ABE28_001625 PF01627 Hpt domain ABE28_001625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_001635 PF02447 GntP family permease ABE28_001640 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABE28_001645 PF17042 Nucleotide-binding C-terminal domain ABE28_001645 PF07005 Sugar-binding N-terminal domain ABE28_001650 PF00455 DeoR C terminal sensor domain ABE28_001650 PF08220 DeoR-like helix-turn-helix domain ABE28_001655 PF00392 Bacterial regulatory proteins, gntR family ABE28_001655 PF07729 FCD domain ABE28_001660 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABE28_001660 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABE28_001665 PF02447 GntP family permease ABE28_001670 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ABE28_001670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABE28_001680 PF00144 Beta-lactamase ABE28_001685 PF01497 Periplasmic binding protein ABE28_001690 PF01032 FecCD transport family ABE28_001695 PF01032 FecCD transport family ABE28_001700 PF09021 HutP ABE28_001705 PF00221 Aromatic amino acid lyase ABE28_001710 PF00324 Amino acid permease ABE28_001720 PF00571 CBS domain ABE28_001720 PF00005 ABC transporter ABE28_001725 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABE28_001735 PF01156 Inosine-uridine preferring nucleoside hydrolase ABE28_001740 PF06013 Proteins of 100 residues with WXG ABE28_001750 PF10140 WXG100 protein secretion system (Wss), protein YukC ABE28_001755 PF12538 DNA transporter ABE28_001755 PF01580 FtsK/SpoIIIE family ABE28_001765 PF17355 Family of unknown function (DUF5383) ABE28_001770 PF00872 Transposase, Mutator family ABE28_001775 PF01497 Periplasmic binding protein ABE28_001785 PF07726 ATPase family associated with various cellular activities (AAA) ABE28_001785 PF17863 AAA lid domain ABE28_001790 PF01882 Protein of unknown function DUF58 ABE28_001795 PF13559 Domain of unknown function (DUF4129) ABE28_001795 PF01841 Transglutaminase-like superfamily ABE28_001795 PF11992 Domain of unknown function (DUF3488) ABE28_001800 PF00958 GMP synthase C terminal domain ABE28_001800 PF02540 NAD synthase ABE28_001800 PF00117 Glutamine amidotransferase class-I ABE28_001805 PF00860 Permease family ABE28_001810 PF03123 CAT RNA binding domain ABE28_001810 PF00874 PRD domain ABE28_001815 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ABE28_001815 PF02378 Phosphotransferase system, EIIC ABE28_001815 PF00367 phosphotransferase system, EIIB ABE28_001835 PF07690 Major Facilitator Superfamily ABE28_001840 PF01487 Type I 3-dehydroquinase ABE28_001845 PF08501 Shikimate dehydrogenase substrate binding domain ABE28_001845 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABE28_001850 PF07690 Major Facilitator Superfamily ABE28_001860 PF01202 Shikimate kinase ABE28_001880 PF14044 NETI protein ABE28_001885 PF00731 AIR carboxylase ABE28_001890 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ABE28_001890 PF02222 ATP-grasp domain ABE28_001895 PF00206 Lyase ABE28_001895 PF10397 Adenylosuccinate lyase C-terminus ABE28_001900 PF01259 SAICAR synthetase ABE28_001905 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ABE28_001915 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABE28_001915 PF00586 AIR synthase related protein, N-terminal domain ABE28_001915 PF02769 AIR synthase related protein, C-terminal domain ABE28_001920 PF00156 Phosphoribosyl transferase domain ABE28_001930 PF00551 Formyl transferase ABE28_001935 PF01808 AICARFT/IMPCHase bienzyme ABE28_001935 PF02142 MGS-like domain ABE28_001940 PF02844 Phosphoribosylglycinamide synthetase, N domain ABE28_001940 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABE28_001940 PF02843 Phosphoribosylglycinamide synthetase, C domain ABE28_001945 PF11127 Protein of unknown function (DUF2892) ABE28_001950 PF01979 Amidohydrolase family ABE28_001950 PF13382 Adenine deaminase C-terminal domain ABE28_001955 PF11258 Protein of unknown function (DUF3048) N-terminal domain ABE28_001955 PF17479 Protein of unknown function (DUF3048) C-terminal domain ABE28_001960 PF01371 Trp repressor protein ABE28_001965 PF01884 PcrB family ABE28_001970 PF13361 UvrD-like helicase C-terminal domain ABE28_001970 PF00580 UvrD/REP helicase N-terminal domain ABE28_001975 PF00533 BRCA1 C Terminus (BRCT) domain ABE28_001975 PF01653 NAD-dependent DNA ligase adenylation domain ABE28_001975 PF03120 NAD-dependent DNA ligase OB-fold domain ABE28_001975 PF12826 Helix-hairpin-helix motif ABE28_001975 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ABE28_001980 PF07537 CamS sex pheromone cAM373 precursor ABE28_001985 PF02686 Glu-tRNAGln amidotransferase C subunit ABE28_001990 PF01425 Amidase ABE28_001995 PF02934 GatB/GatE catalytic domain ABE28_001995 PF02637 GatB domain ABE28_002000 PF04542 Sigma-70 region 2 ABE28_002000 PF08281 Sigma-70, region 4 ABE28_002020 PF00781 Diacylglycerol kinase catalytic domain ABE28_002025 PF00583 Acetyltransferase (GNAT) family ABE28_002035 PF01938 TRAM domain ABE28_002035 PF05958 tRNA (Uracil-5-)-methyltransferase ABE28_002040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_002040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_002045 PF04239 Protein of unknown function (DUF421) ABE28_002055 PF07451 Stage V sporulation protein AD (SpoVAD) ABE28_002085 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein ABE28_002090 PF05816 Toxic anion resistance protein (TelA) ABE28_002095 PF00881 Nitroreductase family ABE28_002100 PF02810 SEC-C motif ABE28_002100 PF07517 SecA DEAD-like domain ABE28_002100 PF07516 SecA Wing and Scaffold domain ABE28_002100 PF01043 SecA preprotein cross-linking domain ABE28_002105 PF00082 Subtilase family ABE28_002110 PF07987 Domain of unkown function (DUF1775) ABE28_002115 PF04234 CopC domain ABE28_002115 PF05425 Copper resistance protein D ABE28_002115 PF13115 YtkA-like ABE28_002125 PF13188 PAS domain ABE28_002125 PF00989 PAS fold ABE28_002125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_002125 PF13426 PAS domain ABE28_002125 PF00512 His Kinase A (phospho-acceptor) domain ABE28_002130 PF09335 SNARE associated Golgi protein ABE28_002135 PF06177 QueT transporter ABE28_002140 PF04073 Aminoacyl-tRNA editing domain ABE28_002150 PF13031 Protein of unknown function (DUF3892) ABE28_002155 PF02225 PA domain ABE28_002155 PF04389 Peptidase family M28 ABE28_002170 PF04740 LXG domain of WXG superfamily ABE28_002170 PF14449 Pre-toxin TG ABE28_002170 PF14431 YwqJ-like deaminase ABE28_002185 PF04286 Protein of unknown function (DUF445) ABE28_002190 PF01758 Sodium Bile acid symporter family ABE28_002195 PF00072 Response regulator receiver domain ABE28_002195 PF00486 Transcriptional regulatory protein, C terminal ABE28_002200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_002200 PF00672 HAMP domain ABE28_002200 PF00512 His Kinase A (phospho-acceptor) domain ABE28_002205 PF02687 FtsX-like permease family ABE28_002210 PF00005 ABC transporter ABE28_002215 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_002215 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_002230 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_002235 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_002240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ABE28_002240 PF00356 Bacterial regulatory proteins, lacI family ABE28_002250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_002250 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_002255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_002255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_002265 PF00849 RNA pseudouridylate synthase ABE28_002265 PF01479 S4 domain ABE28_002270 PF00248 Aldo/keto reductase family ABE28_002285 PF00005 ABC transporter ABE28_002290 PF02653 Branched-chain amino acid transport system / permease component ABE28_002305 PF13180 PDZ domain ABE28_002315 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABE28_002320 PF00510 Cytochrome c oxidase subunit III ABE28_002325 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABE28_002330 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ABE28_002340 PF14489 QueF-like protein ABE28_002345 PF00696 Amino acid kinase family ABE28_002345 PF13840 ACT domain ABE28_002350 PF07730 Histidine kinase ABE28_002355 PF00072 Response regulator receiver domain ABE28_002355 PF00196 Bacterial regulatory proteins, luxR family ABE28_002360 PF00005 ABC transporter ABE28_002375 PF00881 Nitroreductase family ABE28_002380 PF00005 ABC transporter ABE28_002380 PF00664 ABC transporter transmembrane region ABE28_002385 PF00005 ABC transporter ABE28_002385 PF00664 ABC transporter transmembrane region ABE28_002390 PF17932 Tetracyclin repressor-like, C-terminal domain ABE28_002390 PF00440 Bacterial regulatory proteins, tetR family ABE28_002395 PF07690 Major Facilitator Superfamily ABE28_002405 PF02554 Carbon starvation protein CstA ABE28_002405 PF13722 5TM C-terminal transporter carbon starvation CstA ABE28_002415 PF00909 Ammonium Transporter Family ABE28_002420 PF00543 Nitrogen regulatory protein P-II ABE28_002430 PF04397 LytTr DNA-binding domain ABE28_002430 PF00072 Response regulator receiver domain ABE28_002435 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABE28_002435 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABE28_002440 PF01594 AI-2E family transporter ABE28_002445 PF00171 Aldehyde dehydrogenase family ABE28_002450 PF00375 Sodium:dicarboxylate symporter family ABE28_002455 PF02558 Ketopantoate reductase PanE/ApbA ABE28_002455 PF08546 Ketopantoate reductase PanE/ApbA C terminal ABE28_002460 PF06725 3D domain ABE28_002460 PF01476 LysM domain ABE28_002465 PF07687 Peptidase dimerisation domain ABE28_002465 PF01546 Peptidase family M20/M25/M40 ABE28_002470 PF09557 Domain of unknown function (DUF2382) ABE28_002470 PF11181 Heat induced stress protein YflT ABE28_002475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_002475 PF02743 Cache domain ABE28_002475 PF00672 HAMP domain ABE28_002490 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ABE28_002495 PF13419 Haloacid dehalogenase-like hydrolase ABE28_002505 PF00041 Fibronectin type III domain ABE28_002505 PF00704 Glycosyl hydrolases family 18 ABE28_002510 PF04552 Sigma-54, DNA binding domain ABE28_002510 PF04963 Sigma-54 factor, core binding domain ABE28_002510 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABE28_002515 PF00202 Aminotransferase class-III ABE28_002520 PF00171 Aldehyde dehydrogenase family ABE28_002530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABE28_002530 PF01568 Molydopterin dinucleotide binding domain ABE28_002530 PF00384 Molybdopterin oxidoreductase ABE28_002535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_002535 PF00989 PAS fold ABE28_002535 PF08447 PAS fold ABE28_002535 PF00512 His Kinase A (phospho-acceptor) domain ABE28_002540 PF00271 Helicase conserved C-terminal domain ABE28_002540 PF00270 DEAD/DEAH box helicase ABE28_002545 PF13333 Integrase core domain ABE28_002545 PF00665 Integrase core domain ABE28_002545 PF13276 HTH-like domain ABE28_002555 PF01047 MarR family ABE28_002560 PF13673 Acetyltransferase (GNAT) domain ABE28_002570 PF01053 Cys/Met metabolism PLP-dependent enzyme ABE28_002580 PF00677 Lumazine binding domain ABE28_002590 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABE28_002600 PF03631 Virulence factor BrkB ABE28_002620 PF01593 Flavin containing amine oxidoreductase ABE28_002635 PF01593 Flavin containing amine oxidoreductase ABE28_002640 PF00535 Glycosyl transferase family 2 ABE28_002650 PF00999 Sodium/hydrogen exchanger family ABE28_002655 PF02080 TrkA-C domain ABE28_002660 PF00589 Phage integrase family ABE28_002670 PF05145 Transition state regulatory protein AbrB ABE28_002675 PF01618 MotA/TolQ/ExbB proton channel family ABE28_002680 PF13677 Membrane MotB of proton-channel complex MotA/MotB ABE28_002680 PF00691 OmpA family ABE28_002690 PF01965 DJ-1/PfpI family ABE28_002695 PF00557 Metallopeptidase family M24 ABE28_002700 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ABE28_002705 PF00994 Probable molybdopterin binding domain ABE28_002705 PF03453 MoeA N-terminal region (domain I and II) ABE28_002705 PF03454 MoeA C-terminal region (domain IV) ABE28_002710 PF06569 Protein of unknown function (DUF1128) ABE28_002720 PF03631 Virulence factor BrkB ABE28_002730 PF07690 Major Facilitator Superfamily ABE28_002735 PF01699 Sodium/calcium exchanger protein ABE28_002740 PF14167 YfkD-like protein ABE28_002745 PF08756 YfkB-like domain ABE28_002745 PF04055 Radical SAM superfamily ABE28_002755 PF05681 Fumarate hydratase (Fumerase) ABE28_002755 PF05683 Fumarase C-terminus ABE28_002770 PF01522 Polysaccharide deacetylase ABE28_002775 PF00730 HhH-GPD superfamily base excision DNA repair protein ABE28_002780 PF01938 TRAM domain ABE28_002780 PF05958 tRNA (Uracil-5-)-methyltransferase ABE28_002785 PF01207 Dihydrouridine synthase (Dus) ABE28_002790 PF07308 Protein of unknown function (DUF1456) ABE28_002795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABE28_002795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABE28_002805 PF03606 C4-dicarboxylate anaerobic carrier ABE28_002810 PF01546 Peptidase family M20/M25/M40 ABE28_002810 PF07687 Peptidase dimerisation domain ABE28_002815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_002815 PF02743 Cache domain ABE28_002815 PF00672 HAMP domain ABE28_002825 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABE28_002830 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_002835 PF00005 ABC transporter ABE28_002845 PF01325 Iron dependent repressor, N-terminal DNA binding domain ABE28_002845 PF00480 ROK family ABE28_002855 PF08402 TOBE domain ABE28_002855 PF00005 ABC transporter ABE28_002860 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_002865 PF00206 Lyase ABE28_002865 PF14698 Argininosuccinate lyase C-terminal ABE28_002870 PF00474 Sodium:solute symporter family ABE28_002880 PF00324 Amino acid permease ABE28_002885 PF00324 Amino acid permease ABE28_002890 PF10609 NUBPL iron-transfer P-loop NTPase ABE28_002895 PF02634 FdhD/NarQ family ABE28_002900 PF06463 Molybdenum Cofactor Synthesis C ABE28_002900 PF04055 Radical SAM superfamily ABE28_002905 PF01967 MoaC family ABE28_002910 PF00899 ThiF family ABE28_002915 PF00994 Probable molybdopterin binding domain ABE28_002915 PF03453 MoeA N-terminal region (domain I and II) ABE28_002915 PF03454 MoeA C-terminal region (domain IV) ABE28_002920 PF02391 MoaE protein ABE28_002925 PF02597 ThiS family ABE28_002930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABE28_002930 PF00037 4Fe-4S binding domain ABE28_002930 PF00384 Molybdopterin oxidoreductase ABE28_002930 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABE28_002930 PF01568 Molydopterin dinucleotide binding domain ABE28_002935 PF07849 Protein of unknown function (DUF1641) ABE28_002940 PF06146 Phosphate-starvation-inducible E ABE28_002945 PF10057 Uncharacterized conserved protein (DUF2294) ABE28_002955 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_002965 PF00384 Molybdopterin oxidoreductase ABE28_002965 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABE28_002965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABE28_002965 PF01568 Molydopterin dinucleotide binding domain ABE28_002965 PF12838 4Fe-4S dicluster domain ABE28_002980 PF03466 LysR substrate binding domain ABE28_002980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_002985 PF00296 Luciferase-like monooxygenase ABE28_002990 PF00296 Luciferase-like monooxygenase ABE28_002995 PF00462 Glutaredoxin ABE28_003005 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABE28_003010 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_003015 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_003020 PF00005 ABC transporter ABE28_003030 PF01546 Peptidase family M20/M25/M40 ABE28_003030 PF07687 Peptidase dimerisation domain ABE28_003040 PF06800 Sugar transport protein ABE28_003050 PF07690 Major Facilitator Superfamily ABE28_003055 PF00155 Aminotransferase class I and II ABE28_003060 PF01370 NAD dependent epimerase/dehydratase family ABE28_003065 PF00324 Amino acid permease ABE28_003075 PF00239 Resolvase, N terminal domain ABE28_003075 PF02796 Helix-turn-helix domain of resolvase ABE28_003115 PF10996 Beta-Casp domain ABE28_003115 PF00753 Metallo-beta-lactamase superfamily ABE28_003115 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ABE28_003125 PF00772 DnaB-like helicase N terminal domain ABE28_003125 PF03796 DnaB-like helicase C terminal domain ABE28_003195 PF00574 Clp protease ABE28_003235 PF01464 Transglycosylase SLT domain ABE28_003350 PF00005 ABC transporter ABE28_003365 PF00512 His Kinase A (phospho-acceptor) domain ABE28_003365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_003370 PF00072 Response regulator receiver domain ABE28_003370 PF00486 Transcriptional regulatory protein, C terminal ABE28_003375 PF00005 ABC transporter ABE28_003380 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_003385 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABE28_003395 PF14172 Domain of unknown function (DUF4309) ABE28_003405 PF08338 Domain of unknown function (DUF1731) ABE28_003405 PF01370 NAD dependent epimerase/dehydratase family ABE28_003410 PF00860 Permease family ABE28_003415 PF07905 Purine catabolism regulatory protein-like family ABE28_003415 PF13556 PucR C-terminal helix-turn-helix domain ABE28_003415 PF17853 GGDEF-like domain ABE28_003420 PF17853 GGDEF-like domain ABE28_003420 PF13556 PucR C-terminal helix-turn-helix domain ABE28_003425 PF09349 OHCU decarboxylase ABE28_003425 PF01014 Uricase ABE28_003430 PF09349 OHCU decarboxylase ABE28_003430 PF01014 Uricase ABE28_003435 PF00576 HIUase/Transthyretin family ABE28_003440 PF08534 Redoxin ABE28_003445 PF00194 Eukaryotic-type carbonic anhydrase ABE28_003460 PF01476 LysM domain ABE28_003460 PF00877 NlpC/P60 family ABE28_003475 PF03551 Transcriptional regulator PadR-like family ABE28_003490 PF01758 Sodium Bile acid symporter family ABE28_003495 PF07690 Major Facilitator Superfamily ABE28_003520 PF12728 Helix-turn-helix domain ABE28_003525 PF01594 AI-2E family transporter ABE28_003530 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABE28_003535 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_003540 PF00005 ABC transporter ABE28_003550 PF03466 LysR substrate binding domain ABE28_003550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_003560 PF00376 MerR family regulatory protein ABE28_003560 PF09278 MerR, DNA binding ABE28_003565 PF00106 short chain dehydrogenase ABE28_003570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_003570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_003570 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_003575 PF00108 Thiolase, N-terminal domain ABE28_003575 PF02803 Thiolase, C-terminal domain ABE28_003580 PF13193 AMP-binding enzyme C-terminal domain ABE28_003580 PF00501 AMP-binding enzyme ABE28_003585 PF14151 YfhD-like protein ABE28_003595 PF01370 NAD dependent epimerase/dehydratase family ABE28_003595 PF08338 Domain of unknown function (DUF1731) ABE28_003600 PF02631 RecX family ABE28_003605 PF08838 Protein of unknown function (DUF1811) ABE28_003615 PF14043 WVELL protein ABE28_003620 PF04307 LexA-binding, inner membrane-associated putative hydrolase ABE28_003625 PF00730 HhH-GPD superfamily base excision DNA repair protein ABE28_003625 PF14815 NUDIX domain ABE28_003650 PF14182 YgaB-like protein ABE28_003655 PF04167 Protein of unknown function (DUF402) ABE28_003660 PF00664 ABC transporter transmembrane region ABE28_003660 PF00005 ABC transporter ABE28_003665 PF00892 EamA-like transporter family ABE28_003675 PF03358 NADPH-dependent FMN reductase ABE28_003680 PF07690 Major Facilitator Superfamily ABE28_003690 PF01047 MarR family ABE28_003695 PF06081 Aromatic acid exporter family member 1 ABE28_003700 PF04898 Glutamate synthase central domain ABE28_003700 PF00310 Glutamine amidotransferases class-II ABE28_003700 PF01493 GXGXG motif ABE28_003700 PF01645 Conserved region in glutamate synthase ABE28_003705 PF00202 Aminotransferase class-III ABE28_003735 PF00589 Phage integrase family ABE28_003745 PF00574 Clp protease ABE28_003750 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ABE28_003755 PF09084 NMT1/THI5 like ABE28_003760 PF00005 ABC transporter ABE28_003765 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_003770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_003770 PF00512 His Kinase A (phospho-acceptor) domain ABE28_003775 PF03009 Glycerophosphoryl diester phosphodiesterase family ABE28_003780 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_003780 PF13823 Alcohol dehydrogenase GroES-associated ABE28_003780 PF00107 Zinc-binding dehydrogenase ABE28_003810 PF01964 Radical SAM ThiC family ABE28_003810 PF13667 ThiC-associated domain ABE28_003820 PF02627 Carboxymuconolactone decarboxylase family ABE28_003835 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_003835 PF00107 Zinc-binding dehydrogenase ABE28_003855 PF07563 Protein of unknown function (DUF1541) ABE28_003870 PF00534 Glycosyl transferases group 1 ABE28_003905 PF00480 ROK family ABE28_003910 PF02614 Glucuronate isomerase ABE28_003915 PF02837 Glycosyl hydrolases family 2, sugar binding domain ABE28_003915 PF00703 Glycosyl hydrolases family 2 ABE28_003915 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ABE28_003920 PF12833 Helix-turn-helix domain ABE28_003920 PF02311 AraC-like ligand binding domain ABE28_003930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_003930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_003935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_003935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_003945 PF00106 short chain dehydrogenase ABE28_003950 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_003965 PF03845 Spore germination protein ABE28_003970 PF02447 GntP family permease ABE28_003985 PF03992 Antibiotic biosynthesis monooxygenase ABE28_003990 PF02954 Bacterial regulatory protein, Fis family ABE28_003990 PF13426 PAS domain ABE28_003990 PF00158 Sigma-54 interaction domain ABE28_003995 PF00491 Arginase family ABE28_004005 PF00440 Bacterial regulatory proteins, tetR family ABE28_004010 PF07690 Major Facilitator Superfamily ABE28_004020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABE28_004055 PF01435 Peptidase family M48 ABE28_004060 PF07681 DoxX ABE28_004075 PF06039 Malate:quinone oxidoreductase (Mqo) ABE28_004085 PF05977 Transmembrane secretion effector ABE28_004095 PF01497 Periplasmic binding protein ABE28_004105 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABE28_004110 PF00392 Bacterial regulatory proteins, gntR family ABE28_004110 PF07729 FCD domain ABE28_004115 PF00296 Luciferase-like monooxygenase ABE28_004125 PF12697 Alpha/beta hydrolase family ABE28_004130 PF00171 Aldehyde dehydrogenase family ABE28_004135 PF03358 NADPH-dependent FMN reductase ABE28_004140 PF01687 Riboflavin kinase ABE28_004145 PF00171 Aldehyde dehydrogenase family ABE28_004155 PF00550 Phosphopantetheine attachment site ABE28_004155 PF00857 Isochorismatase family ABE28_004160 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABE28_004165 PF03466 LysR substrate binding domain ABE28_004165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_004170 PF05145 Transition state regulatory protein AbrB ABE28_004175 PF06866 Protein of unknown function (DUF1256) ABE28_004180 PF03600 Citrate transporter ABE28_004185 PF03466 LysR substrate binding domain ABE28_004185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_004190 PF04303 PrpF protein ABE28_004195 PF00205 Thiamine pyrophosphate enzyme, central domain ABE28_004195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABE28_004195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABE28_004200 PF07690 Major Facilitator Superfamily ABE28_004230 PF00005 ABC transporter ABE28_004230 PF09383 NIL domain ABE28_004235 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_004235 PF12911 N-terminal TM domain of oligopeptide transport permease C ABE28_004240 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_004245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABE28_004255 PF00294 pfkB family carbohydrate kinase ABE28_004265 PF00294 pfkB family carbohydrate kinase ABE28_004270 PF04227 Indigoidine synthase A like protein ABE28_004275 PF07662 Na+ dependent nucleoside transporter C-terminus ABE28_004275 PF01773 Na+ dependent nucleoside transporter N-terminus ABE28_004280 PF01156 Inosine-uridine preferring nucleoside hydrolase ABE28_004285 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_004295 PF05504 Spore germination B3/ GerAC like, C-terminal ABE28_004310 PF00248 Aldo/keto reductase family ABE28_004315 PF18665 Tetracyclin repressor-like, C-terminal domain ABE28_004315 PF00440 Bacterial regulatory proteins, tetR family ABE28_004320 PF00576 HIUase/Transthyretin family ABE28_004325 PF00072 Response regulator receiver domain ABE28_004325 PF00486 Transcriptional regulatory protein, C terminal ABE28_004330 PF00512 His Kinase A (phospho-acceptor) domain ABE28_004330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_004330 PF00989 PAS fold ABE28_004330 PF16736 Single Cache-like ABE28_004335 PF17094 Uncharacterised protein family (UPF0715) ABE28_004350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABE28_004355 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABE28_004370 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_004375 PF03845 Spore germination protein ABE28_004385 PF00232 Glycosyl hydrolase family 1 ABE28_004390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ABE28_004390 PF02378 Phosphotransferase system, EIIC ABE28_004390 PF00367 phosphotransferase system, EIIB ABE28_004395 PF00874 PRD domain ABE28_004395 PF03123 CAT RNA binding domain ABE28_004410 PF00158 Sigma-54 interaction domain ABE28_004420 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABE28_004435 PF00175 Oxidoreductase NAD-binding domain ABE28_004435 PF00111 2Fe-2S iron-sulfur cluster binding domain ABE28_004435 PF00970 Oxidoreductase FAD-binding domain ABE28_004445 PF13393 Histidyl-tRNA synthetase ABE28_004445 PF03129 Anticodon binding domain ABE28_004450 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_004450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_004450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_004455 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABE28_004455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABE28_004460 PF00171 Aldehyde dehydrogenase family ABE28_004465 PF00378 Enoyl-CoA hydratase/isomerase ABE28_004470 PF00378 Enoyl-CoA hydratase/isomerase ABE28_004475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_004485 PF01476 LysM domain ABE28_004485 PF00877 NlpC/P60 family ABE28_004485 PF08239 Bacterial SH3 domain ABE28_004490 PF03845 Spore germination protein ABE28_004500 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_004510 PF09323 Domain of unknown function (DUF1980) ABE28_004515 PF03773 Predicted permease ABE28_004530 PF16884 N-terminal domain of oxidoreductase ABE28_004530 PF00107 Zinc-binding dehydrogenase ABE28_004550 PF08331 Domain of unknown function (DUF1730) ABE28_004555 PF12671 Putative amidase domain ABE28_004560 PF00588 SpoU rRNA Methylase family ABE28_004565 PF00881 Nitroreductase family ABE28_004570 PF00005 ABC transporter ABE28_004575 PF01497 Periplasmic binding protein ABE28_004580 PF01032 FecCD transport family ABE28_004585 PF01032 FecCD transport family ABE28_004590 PF08298 PrkA AAA domain ABE28_004590 PF06798 PrkA serine protein kinase C-terminal domain ABE28_004605 PF04285 Protein of unknown function (DUF444) ABE28_004625 PF03808 Glycosyl transferase WecB/TagA/CpsF family ABE28_004630 PF02397 Bacterial sugar transferase ABE28_004640 PF02706 Chain length determinant protein ABE28_004640 PF13807 G-rich domain on putative tyrosine kinase ABE28_004645 PF13614 AAA domain ABE28_004655 PF00534 Glycosyl transferases group 1 ABE28_004685 PF07690 Major Facilitator Superfamily ABE28_004690 PF07729 FCD domain ABE28_004690 PF00392 Bacterial regulatory proteins, gntR family ABE28_004705 PF13520 Amino acid permease ABE28_004710 PF06800 Sugar transport protein ABE28_004725 PF00890 FAD binding domain ABE28_004725 PF04205 FMN-binding domain ABE28_004725 PF03358 NADPH-dependent FMN reductase ABE28_004730 PF10502 Signal peptidase, peptidase S26 ABE28_004735 PF00158 Sigma-54 interaction domain ABE28_004740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABE28_004740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABE28_004740 PF00205 Thiamine pyrophosphate enzyme, central domain ABE28_004755 PF01522 Polysaccharide deacetylase ABE28_004760 PF09335 SNARE associated Golgi protein ABE28_004765 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase ABE28_004770 PF02245 Methylpurine-DNA glycosylase (MPG) ABE28_004775 PF07690 Major Facilitator Superfamily ABE28_004780 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABE28_004780 PF03807 NADP oxidoreductase coenzyme F420-dependent ABE28_004785 PF02913 FAD linked oxidases, C-terminal domain ABE28_004785 PF01565 FAD binding domain ABE28_004790 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ABE28_004790 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ABE28_004795 PF12787 EcsC protein family ABE28_004800 PF17853 GGDEF-like domain ABE28_004800 PF13556 PucR C-terminal helix-turn-helix domain ABE28_004800 PF06018 CodY GAF-like domain ABE28_004805 PF01384 Phosphate transporter family ABE28_004810 PF01865 Protein of unknown function DUF47 ABE28_004815 PF01384 Phosphate transporter family ABE28_004820 PF00248 Aldo/keto reductase family ABE28_004825 PF04226 Transglycosylase associated protein ABE28_004830 PF01565 FAD binding domain ABE28_004830 PF08031 Berberine and berberine like ABE28_004835 PF00849 RNA pseudouridylate synthase ABE28_004835 PF01479 S4 domain ABE28_004840 PF17326 Family of unknown function (DUF5365) ABE28_004845 PF00085 Thioredoxin ABE28_004850 PF00795 Carbon-nitrogen hydrolase ABE28_004850 PF00583 Acetyltransferase (GNAT) family ABE28_004855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABE28_004855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABE28_004855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABE28_004855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABE28_004860 PF03358 NADPH-dependent FMN reductase ABE28_004865 PF14148 YhdB-like protein ABE28_004870 PF01476 LysM domain ABE28_004870 PF00246 Zinc carboxypeptidase ABE28_004880 PF04055 Radical SAM superfamily ABE28_004880 PF06463 Molybdenum Cofactor Synthesis C ABE28_004890 PF01546 Peptidase family M20/M25/M40 ABE28_004890 PF07687 Peptidase dimerisation domain ABE28_004900 PF04293 SpoVR like protein ABE28_004905 PF07690 Major Facilitator Superfamily ABE28_004915 PF11849 Domain of unknown function (DUF3369) ABE28_004925 PF09335 SNARE associated Golgi protein ABE28_004930 PF00072 Response regulator receiver domain ABE28_004930 PF00486 Transcriptional regulatory protein, C terminal ABE28_004935 PF16736 Single Cache-like ABE28_004935 PF00989 PAS fold ABE28_004935 PF00512 His Kinase A (phospho-acceptor) domain ABE28_004935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_004955 PF02040 Arsenical pump membrane protein ABE28_004960 PF02417 Chromate transporter ABE28_004965 PF02417 Chromate transporter ABE28_004975 PF07690 Major Facilitator Superfamily ABE28_004980 PF01116 Fructose-bisphosphate aldolase class-II ABE28_004985 PF08534 Redoxin ABE28_004990 PF00392 Bacterial regulatory proteins, gntR family ABE28_004990 PF07729 FCD domain ABE28_004995 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABE28_005000 PF01979 Amidohydrolase family ABE28_005005 PF01614 Bacterial transcriptional regulator ABE28_005005 PF09339 IclR helix-turn-helix domain ABE28_005010 PF00456 Transketolase, thiamine diphosphate binding domain ABE28_005015 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABE28_005015 PF02779 Transketolase, pyrimidine binding domain ABE28_005015 PF02780 Transketolase, C-terminal domain ABE28_005025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABE28_005025 PF00205 Thiamine pyrophosphate enzyme, central domain ABE28_005025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABE28_005035 PF07687 Peptidase dimerisation domain ABE28_005035 PF01546 Peptidase family M20/M25/M40 ABE28_005040 PF17853 GGDEF-like domain ABE28_005040 PF13556 PucR C-terminal helix-turn-helix domain ABE28_005040 PF07905 Purine catabolism regulatory protein-like family ABE28_005045 PF01979 Amidohydrolase family ABE28_005050 PF07883 Cupin domain ABE28_005050 PF05899 Protein of unknown function (DUF861) ABE28_005060 PF00860 Permease family ABE28_005065 PF01274 Malate synthase ABE28_005080 PF00266 Aminotransferase class-V ABE28_005090 PF14535 AMP-binding enzyme C-terminal domain ABE28_005090 PF00501 AMP-binding enzyme ABE28_005095 PF05138 Phenylacetic acid catabolic protein ABE28_005120 PF00378 Enoyl-CoA hydratase/isomerase ABE28_005125 PF00378 Enoyl-CoA hydratase/isomerase ABE28_005130 PF00171 Aldehyde dehydrogenase family ABE28_005135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABE28_005135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABE28_005140 PF00108 Thiolase, N-terminal domain ABE28_005140 PF02803 Thiolase, C-terminal domain ABE28_005145 PF00378 Enoyl-CoA hydratase/isomerase ABE28_005150 PF07848 PaaX-like protein ABE28_005150 PF08223 PaaX-like protein C-terminal domain ABE28_005155 PF00132 Bacterial transferase hexapeptide (six repeats) ABE28_005160 PF03060 Nitronate monooxygenase ABE28_005165 PF09335 SNARE associated Golgi protein ABE28_005175 PF01545 Cation efflux family ABE28_005175 PF16916 Dimerisation domain of Zinc Transporter ABE28_005180 PF00486 Transcriptional regulatory protein, C terminal ABE28_005180 PF00072 Response regulator receiver domain ABE28_005185 PF16736 Single Cache-like ABE28_005185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_005185 PF00512 His Kinase A (phospho-acceptor) domain ABE28_005185 PF00989 PAS fold ABE28_005190 PF03960 ArsC family ABE28_005195 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_005205 PF00313 'Cold-shock' DNA-binding domain ABE28_005210 PF00258 Flavodoxin ABE28_005215 PF00268 Ribonucleotide reductase, small chain ABE28_005220 PF03477 ATP cone domain ABE28_005220 PF02867 Ribonucleotide reductase, barrel domain ABE28_005220 PF00317 Ribonucleotide reductase, all-alpha domain ABE28_005225 PF01368 DHH family ABE28_005225 PF02833 DHHA2 domain ABE28_005250 PF07690 Major Facilitator Superfamily ABE28_005255 PF03600 Citrate transporter ABE28_005270 PF03060 Nitronate monooxygenase ABE28_005275 PF00583 Acetyltransferase (GNAT) family ABE28_005280 PF01569 PAP2 superfamily ABE28_005285 PF01098 Cell cycle protein ABE28_005290 PF06803 Protein of unknown function (DUF1232) ABE28_005295 PF03816 Cell envelope-related transcriptional attenuator domain ABE28_005320 PF03471 Transporter associated domain ABE28_005320 PF01595 Cyclin M transmembrane N-terminal domain ABE28_005320 PF00571 CBS domain ABE28_005325 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_005325 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_005335 PF09335 SNARE associated Golgi protein ABE28_005340 PF00571 CBS domain ABE28_005340 PF03471 Transporter associated domain ABE28_005340 PF01595 Cyclin M transmembrane N-terminal domain ABE28_005345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_005345 PF00512 His Kinase A (phospho-acceptor) domain ABE28_005345 PF02743 Cache domain ABE28_005350 PF16916 Dimerisation domain of Zinc Transporter ABE28_005350 PF01545 Cation efflux family ABE28_005355 PF00582 Universal stress protein family ABE28_005360 PF00912 Transglycosylase ABE28_005360 PF00905 Penicillin binding protein transpeptidase domain ABE28_005370 PF01979 Amidohydrolase family ABE28_005375 PF00676 Dehydrogenase E1 component ABE28_005380 PF02780 Transketolase, C-terminal domain ABE28_005380 PF02779 Transketolase, pyrimidine binding domain ABE28_005385 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABE28_005385 PF02817 e3 binding domain ABE28_005385 PF00364 Biotin-requiring enzyme ABE28_005390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABE28_005390 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_005395 PF00324 Amino acid permease ABE28_005400 PF00155 Aminotransferase class I and II ABE28_005405 PF01037 Lrp/AsnC ligand binding domain ABE28_005415 PF01037 Lrp/AsnC ligand binding domain ABE28_005420 PF04542 Sigma-70 region 2 ABE28_005420 PF08281 Sigma-70, region 4 ABE28_005435 PF01906 Putative heavy-metal-binding ABE28_005440 PF00255 Glutathione peroxidase ABE28_005445 PF00199 Catalase ABE28_005445 PF06628 Catalase-related immune-responsive ABE28_005450 PF03109 ABC1 family ABE28_005475 PF00571 CBS domain ABE28_005475 PF00478 IMP dehydrogenase / GMP reductase domain ABE28_005490 PF10720 Protein of unknown function (DUF2515) ABE28_005495 PF00664 ABC transporter transmembrane region ABE28_005495 PF00005 ABC transporter ABE28_005500 PF00664 ABC transporter transmembrane region ABE28_005500 PF00005 ABC transporter ABE28_005505 PF01197 Ribosomal protein L31 ABE28_005510 PF01053 Cys/Met metabolism PLP-dependent enzyme ABE28_005515 PF01053 Cys/Met metabolism PLP-dependent enzyme ABE28_005520 PF10415 Fumarase C C-terminus ABE28_005520 PF00206 Lyase ABE28_005530 PF03459 TOBE domain ABE28_005530 PF17912 MalK OB fold domain ABE28_005530 PF00005 ABC transporter ABE28_005535 PF13556 PucR C-terminal helix-turn-helix domain ABE28_005540 PF00465 Iron-containing alcohol dehydrogenase ABE28_005545 PF03180 NLPA lipoprotein ABE28_005550 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_005555 PF09383 NIL domain ABE28_005555 PF00005 ABC transporter ABE28_005580 PF14398 YheC/D like ATP-grasp ABE28_005585 PF14398 YheC/D like ATP-grasp ABE28_005590 PF14398 YheC/D like ATP-grasp ABE28_005600 PF06133 Control of competence regulator ComK, YlbF/YmcA ABE28_005630 PF13193 AMP-binding enzyme C-terminal domain ABE28_005630 PF00501 AMP-binding enzyme ABE28_005635 PF00378 Enoyl-CoA hydratase/isomerase ABE28_005640 PF14120 YhzD-like protein ABE28_005645 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_005650 PF00149 Calcineurin-like phosphoesterase ABE28_005655 PF13514 AAA domain ABE28_005665 PF00005 ABC transporter ABE28_005675 PF02525 Flavodoxin-like fold ABE28_005685 PF01645 Conserved region in glutamate synthase ABE28_005690 PF01966 HD domain ABE28_005695 PF14147 Sporulation protein YhaL ABE28_005700 PF05698 Bacterial trigger factor protein (TF) C-terminus ABE28_005705 PF09680 Family of unknown function ABE28_005725 PF01047 MarR family ABE28_005730 PF12732 YtxH-like protein ABE28_005740 PF17099 Tryptophan transporter TrpP ABE28_005745 PF00266 Aminotransferase class-V ABE28_005750 PF01230 HIT domain ABE28_005755 PF00005 ABC transporter ABE28_005760 PF05975 Bacterial ABC transporter protein EcsB ABE28_005765 PF12787 EcsC protein family ABE28_005770 PF07687 Peptidase dimerisation domain ABE28_005770 PF01546 Peptidase family M20/M25/M40 ABE28_005780 PF03992 Antibiotic biosynthesis monooxygenase ABE28_005785 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABE28_005795 PF17932 Tetracyclin repressor-like, C-terminal domain ABE28_005795 PF00440 Bacterial regulatory proteins, tetR family ABE28_005800 PF14149 YhfH-like protein ABE28_005805 PF12706 Beta-lactamase superfamily domain ABE28_005810 PF03099 Biotin/lipoate A/B protein ligase family ABE28_005810 PF10437 Bacterial lipoate protein ligase C-terminus ABE28_005815 PF13193 AMP-binding enzyme C-terminal domain ABE28_005815 PF00501 AMP-binding enzyme ABE28_005820 PF01966 HD domain ABE28_005825 PF00196 Bacterial regulatory proteins, luxR family ABE28_005825 PF00072 Response regulator receiver domain ABE28_005830 PF01435 Peptidase family M48 ABE28_005830 PF16491 CAAX prenyl protease N-terminal, five membrane helices ABE28_005835 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_005835 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_005845 PF06338 ComK protein ABE28_005855 PF09335 SNARE associated Golgi protein ABE28_005860 PF10502 Signal peptidase, peptidase S26 ABE28_005865 PF13361 UvrD-like helicase C-terminal domain ABE28_005865 PF12705 PD-(D/E)XK nuclease superfamily ABE28_005870 PF12705 PD-(D/E)XK nuclease superfamily ABE28_005870 PF13361 UvrD-like helicase C-terminal domain ABE28_005870 PF00580 UvrD/REP helicase N-terminal domain ABE28_005890 PF10737 Spore germination protein GerPC ABE28_005895 PF10803 Spore germination GerPB ABE28_005900 PF10676 Spore germination protein gerPA/gerPF ABE28_005905 PF07690 Major Facilitator Superfamily ABE28_005910 PF04235 Protein of unknown function (DUF418) ABE28_005915 PF07457 Protein of unknown function (DUF1516) ABE28_005925 PF13537 Glutamine amidotransferase domain ABE28_005925 PF00733 Asparagine synthase ABE28_005930 PF02903 Alpha amylase, N-terminal ig-like domain ABE28_005930 PF00128 Alpha amylase, catalytic domain ABE28_005930 PF16657 Maltogenic Amylase, C-terminal domain ABE28_005935 PF13416 Bacterial extracellular solute-binding protein ABE28_005940 PF00686 Starch binding domain ABE28_005940 PF02806 Alpha amylase, C-terminal all-beta domain ABE28_005940 PF00128 Alpha amylase, catalytic domain ABE28_005945 PF16657 Maltogenic Amylase, C-terminal domain ABE28_005945 PF00128 Alpha amylase, catalytic domain ABE28_005950 PF00356 Bacterial regulatory proteins, lacI family ABE28_005950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ABE28_005955 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABE28_005955 PF00753 Metallo-beta-lactamase superfamily ABE28_005965 PF04461 Protein of unknown function (DUF520) ABE28_005970 PF02645 Uncharacterised protein, DegV family COG1307 ABE28_005975 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_005975 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_005980 PF00477 Small hydrophilic plant seed protein ABE28_005980 PF10685 Stress-induced bacterial acidophilic repeat motif ABE28_005985 PF12758 Protein of unknown function (DUF3813) ABE28_006000 PF00326 Prolyl oligopeptidase family ABE28_006005 PF01883 Iron-sulfur cluster assembly protein ABE28_006010 PF04055 Radical SAM superfamily ABE28_006010 PF06463 Molybdenum Cofactor Synthesis C ABE28_006015 PF00325 Bacterial regulatory proteins, crp family ABE28_006015 PF00027 Cyclic nucleotide-binding domain ABE28_006020 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABE28_006020 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABE28_006025 PF01960 ArgJ family ABE28_006030 PF00696 Amino acid kinase family ABE28_006035 PF00202 Aminotransferase class-III ABE28_006040 PF00117 Glutamine amidotransferase class-I ABE28_006040 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABE28_006045 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABE28_006045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABE28_006050 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABE28_006050 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABE28_006055 PF14168 YjzC-like protein ABE28_006060 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABE28_006065 PF02861 Clp amino terminal domain, pathogenicity island component ABE28_006065 PF10431 C-terminal, D2-small domain, of ClpB protein ABE28_006065 PF07724 AAA domain (Cdc48 subfamily) ABE28_006065 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_006065 PF17871 AAA lid domain ABE28_006085 PF10815 ComZ ABE28_006095 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABE28_006095 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABE28_006100 PF00109 Beta-ketoacyl synthase, N-terminal domain ABE28_006100 PF02801 Beta-ketoacyl synthase, C-terminal domain ABE28_006105 PF10026 Predicted Zn-dependent protease (DUF2268) ABE28_006110 PF12227 Protein of unknown function (DUF3603) ABE28_006115 PF00579 tRNA synthetases class I (W and Y) ABE28_006130 PF13508 Acetyltransferase (GNAT) domain ABE28_006140 PF03960 ArsC family ABE28_006145 PF05389 Negative regulator of genetic competence (MecA) ABE28_006150 PF13091 PLD-like domain ABE28_006150 PF13396 Phospholipase_D-nuclease N-terminal ABE28_006155 PF06054 Competence protein CoiA-like family ABE28_006160 PF01432 Peptidase family M3 ABE28_006160 PF08439 Oligopeptidase F ABE28_006180 PF01152 Bacterial-like globin ABE28_006185 PF01464 Transglycosylase SLT domain ABE28_006190 PF01928 CYTH domain ABE28_006195 PF04607 Region found in RelA / SpoT proteins ABE28_006200 PF01513 ATP-NAD kinase ABE28_006205 PF00849 RNA pseudouridylate synthase ABE28_006210 PF00149 Calcineurin-like phosphoesterase ABE28_006215 PF00571 CBS domain ABE28_006215 PF01769 Divalent cation transporter ABE28_006215 PF03448 MgtE intracellular N domain ABE28_006225 PF01497 Periplasmic binding protein ABE28_006240 PF07098 Protein of unknown function (DUF1360) ABE28_006250 PF03862 SpoVAC/SpoVAEB sporulation membrane protein ABE28_006255 PF07451 Stage V sporulation protein AD (SpoVAD) ABE28_006260 PF03862 SpoVAC/SpoVAEB sporulation membrane protein ABE28_006265 PF14069 Stage VI sporulation protein F ABE28_006270 PF00580 UvrD/REP helicase N-terminal domain ABE28_006270 PF13361 UvrD-like helicase C-terminal domain ABE28_006280 PF07552 Spore Coat Protein X and V domain ABE28_006290 PF13673 Acetyltransferase (GNAT) domain ABE28_006300 PF00756 Putative esterase ABE28_006305 PF04608 Phosphatidylglycerophosphatase A ABE28_006320 PF11188 Protein of unknown function (DUF2975) ABE28_006325 PF13443 Cro/C1-type HTH DNA-binding domain ABE28_006330 PF08281 Sigma-70, region 4 ABE28_006330 PF04542 Sigma-70 region 2 ABE28_006345 PF01416 tRNA pseudouridine synthase ABE28_006350 PF01965 DJ-1/PfpI family ABE28_006355 PF01061 ABC-2 type transporter ABE28_006360 PF01368 DHH family ABE28_006360 PF02272 DHHA1 domain ABE28_006365 PF02515 CoA-transferase family III ABE28_006370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_006370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_006370 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_006385 PF08757 CotH kinase protein ABE28_006395 PF00753 Metallo-beta-lactamase superfamily ABE28_006395 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABE28_006400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABE28_006400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABE28_006405 PF07690 Major Facilitator Superfamily ABE28_006415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_006415 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_006425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABE28_006430 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ABE28_006430 PF00356 Bacterial regulatory proteins, lacI family ABE28_006435 PF00128 Alpha amylase, catalytic domain ABE28_006440 PF01547 Bacterial extracellular solute-binding protein ABE28_006445 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_006450 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_006455 PF00107 Zinc-binding dehydrogenase ABE28_006460 PF01261 Xylose isomerase-like TIM barrel ABE28_006465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_006465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_006470 PF03636 Glycosyl hydrolase family 65, N-terminal domain ABE28_006470 PF03632 Glycosyl hydrolase family 65 central catalytic domain ABE28_006470 PF03633 Glycosyl hydrolase family 65, C-terminal domain ABE28_006475 PF02595 Glycerate kinase family ABE28_006480 PF13419 Haloacid dehalogenase-like hydrolase ABE28_006485 PF01740 STAS domain ABE28_006485 PF00916 Sulfate permease family ABE28_006490 PF13411 MerR HTH family regulatory protein ABE28_006495 PF00135 Carboxylesterase family ABE28_006500 PF00324 Amino acid permease ABE28_006505 PF01467 Cytidylyltransferase-like ABE28_006515 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_006520 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_006525 PF17850 CysA C-terminal regulatory domain ABE28_006525 PF00005 ABC transporter ABE28_006525 PF12857 TOBE-like domain ABE28_006530 PF00877 NlpC/P60 family ABE28_006545 PF01263 Aldose 1-epimerase ABE28_006550 PF13520 Amino acid permease ABE28_006555 PF10055 Uncharacterized small protein (DUF2292) ABE28_006575 PF00313 'Cold-shock' DNA-binding domain ABE28_006585 PF02073 Thermophilic metalloprotease (M29) ABE28_006590 PF00171 Aldehyde dehydrogenase family ABE28_006595 PF07690 Major Facilitator Superfamily ABE28_006610 PF02581 Thiamine monophosphate synthase ABE28_006610 PF08543 Phosphomethylpyrimidine kinase ABE28_006620 PF03070 TENA/THI-4/PQQC family ABE28_006635 PF00583 Acetyltransferase (GNAT) family ABE28_006645 PF00664 ABC transporter transmembrane region ABE28_006645 PF00005 ABC transporter ABE28_006650 PF12867 DinB superfamily ABE28_006655 PF13539 D-alanyl-D-alanine carboxypeptidase ABE28_006660 PF03061 Thioesterase superfamily ABE28_006665 PF01027 Inhibitor of apoptosis-promoting Bax1 ABE28_006670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_006670 PF00005 ABC transporter ABE28_006675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_006675 PF00005 ABC transporter ABE28_006680 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_006685 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_006690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABE28_006700 PF05343 M42 glutamyl aminopeptidase ABE28_006705 PF16242 Pyridoxamine 5'-phosphate oxidase like ABE28_006710 PF03575 Peptidase family S51 ABE28_006720 PF02096 60Kd inner membrane protein ABE28_006735 PF03009 Glycerophosphoryl diester phosphodiesterase family ABE28_006745 PF02566 OsmC-like protein ABE28_006750 PF00392 Bacterial regulatory proteins, gntR family ABE28_006755 PF00005 ABC transporter ABE28_006765 PF00313 'Cold-shock' DNA-binding domain ABE28_006770 PF00009 Elongation factor Tu GTP binding domain ABE28_006770 PF16658 Class II release factor RF3, C-terminal domain ABE28_006770 PF03144 Elongation factor Tu domain 2 ABE28_006780 PF01098 Cell cycle protein ABE28_006785 PF00550 Phosphopantetheine attachment site ABE28_006785 PF07993 Male sterility protein ABE28_006790 PF00171 Aldehyde dehydrogenase family ABE28_006795 PF03741 Integral membrane protein TerC family ABE28_006800 PF04542 Sigma-70 region 2 ABE28_006805 PF12791 Anti-sigma factor N-terminus ABE28_006810 PF00269 Small, acid-soluble spore proteins, alpha/beta type ABE28_006815 PF02386 Cation transport protein ABE28_006820 PF00512 His Kinase A (phospho-acceptor) domain ABE28_006820 PF00989 PAS fold ABE28_006820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_006825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_006825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_006825 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_006835 PF13193 AMP-binding enzyme C-terminal domain ABE28_006835 PF00501 AMP-binding enzyme ABE28_006840 PF00440 Bacterial regulatory proteins, tetR family ABE28_006840 PF08361 MAATS-type transcriptional repressor, C-terminal region ABE28_006845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABE28_006845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABE28_006850 PF00378 Enoyl-CoA hydratase/isomerase ABE28_006865 PF04029 2-phosphosulpholactate phosphatase ABE28_006875 PF00378 Enoyl-CoA hydratase/isomerase ABE28_006880 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_006880 PF00107 Zinc-binding dehydrogenase ABE28_006895 PF01757 Acyltransferase family ABE28_006900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_006900 PF13188 PAS domain ABE28_006900 PF13426 PAS domain ABE28_006900 PF00989 PAS fold ABE28_006900 PF00512 His Kinase A (phospho-acceptor) domain ABE28_006910 PF02535 ZIP Zinc transporter ABE28_006915 PF07690 Major Facilitator Superfamily ABE28_006920 PF00512 His Kinase A (phospho-acceptor) domain ABE28_006920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_006920 PF02743 Cache domain ABE28_006925 PF01047 MarR family ABE28_006930 PF08439 Oligopeptidase F ABE28_006930 PF01432 Peptidase family M3 ABE28_006945 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) ABE28_006965 PF00565 Staphylococcal nuclease homologue ABE28_006975 PF03649 Uncharacterised protein family (UPF0014) ABE28_006980 PF00381 PTS HPr component phosphorylation site ABE28_006985 PF05524 PEP-utilising enzyme, N-terminal ABE28_006985 PF00391 PEP-utilising enzyme, mobile domain ABE28_006985 PF02896 PEP-utilising enzyme, TIM barrel domain ABE28_006990 PF00106 short chain dehydrogenase ABE28_006995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABE28_006995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABE28_007005 PF00155 Aminotransferase class I and II ABE28_007010 PF01544 CorA-like Mg2+ transporter protein ABE28_007015 PF00072 Response regulator receiver domain ABE28_007015 PF01584 CheW-like domain ABE28_007020 PF14177 YkyB-like protein ABE28_007030 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABE28_007035 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABE28_007040 PF00149 Calcineurin-like phosphoesterase ABE28_007040 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABE28_007045 PF02080 TrkA-C domain ABE28_007045 PF03600 Citrate transporter ABE28_007050 PF10388 EAL-domain associated signalling protein domain ABE28_007050 PF00563 EAL domain ABE28_007070 PF00753 Metallo-beta-lactamase superfamily ABE28_007075 PF08796 Protein of unknown function (DUF1797) ABE28_007095 PF07690 Major Facilitator Superfamily ABE28_007100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_007100 PF03466 LysR substrate binding domain ABE28_007105 PF00132 Bacterial transferase hexapeptide (six repeats) ABE28_007105 PF14602 Hexapeptide repeat of succinyl-transferase ABE28_007105 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal ABE28_007110 PF01546 Peptidase family M20/M25/M40 ABE28_007110 PF07687 Peptidase dimerisation domain ABE28_007115 PF02254 TrkA-N domain ABE28_007115 PF02080 TrkA-C domain ABE28_007120 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ABE28_007120 PF00753 Metallo-beta-lactamase superfamily ABE28_007120 PF17770 Ribonuclease J C-terminal domain ABE28_007135 PF01327 Polypeptide deformylase ABE28_007140 PF10368 Putative cell-wall binding lipoprotein ABE28_007145 PF00676 Dehydrogenase E1 component ABE28_007150 PF02779 Transketolase, pyrimidine binding domain ABE28_007150 PF02780 Transketolase, C-terminal domain ABE28_007155 PF02817 e3 binding domain ABE28_007155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABE28_007155 PF00364 Biotin-requiring enzyme ABE28_007160 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_007160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABE28_007170 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain ABE28_007170 PF01522 Polysaccharide deacetylase ABE28_007180 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ABE28_007180 PF01276 Orn/Lys/Arg decarboxylase, major domain ABE28_007185 PF03060 Nitronate monooxygenase ABE28_007190 PF05256 Uncharacterised protein family (UPF0223) ABE28_007200 PF02885 Glycosyl transferase family, helical bundle domain ABE28_007200 PF00591 Glycosyl transferase family, a/b domain ABE28_007200 PF00117 Glutamine amidotransferase class-I ABE28_007205 PF00591 Glycosyl transferase family, a/b domain ABE28_007205 PF02885 Glycosyl transferase family, helical bundle domain ABE28_007210 PF00218 Indole-3-glycerol phosphate synthase ABE28_007215 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABE28_007220 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_007225 PF00290 Tryptophan synthase alpha chain ABE28_007230 PF06335 Protein of unknown function (DUF1054) ABE28_007240 PF00459 Inositol monophosphatase family ABE28_007245 PF17259 Family of unknown function (DUF5325) ABE28_007255 PF14036 YlaH-like protein ABE28_007270 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) ABE28_007275 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) ABE28_007280 PF02562 PhoH-like protein ABE28_007280 PF13638 PIN domain ABE28_007290 PF07408 Protein of unknown function (DUF1507) ABE28_007295 PF00364 Biotin-requiring enzyme ABE28_007295 PF02785 Biotin carboxylase C-terminal domain ABE28_007295 PF02436 Conserved carboxylase domain ABE28_007295 PF00682 HMGL-like ABE28_007295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABE28_007295 PF00289 Biotin carboxylase, N-terminal domain ABE28_007300 PF02628 Cytochrome oxidase assembly protein ABE28_007305 PF01040 UbiA prenyltransferase family ABE28_007310 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ABE28_007310 PF00034 Cytochrome c ABE28_007310 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ABE28_007315 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABE28_007320 PF00510 Cytochrome c oxidase subunit III ABE28_007325 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABE28_007330 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) ABE28_007340 PF08868 YugN-like family ABE28_007345 PF00188 Cysteine-rich secretory protein family ABE28_007345 PF14504 CAP-associated N-terminal ABE28_007360 PF14003 YlbE-like protein ABE28_007370 PF06133 Control of competence regulator ComK, YlbF/YmcA ABE28_007380 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) ABE28_007400 PF01467 Cytidylyltransferase-like ABE28_007405 PF07670 Nucleoside recognition ABE28_007410 PF01734 Patatin-like phospholipase ABE28_007415 PF05362 Lon protease (S16) C-terminal proteolytic domain ABE28_007415 PF13180 PDZ domain ABE28_007420 PF13276 HTH-like domain ABE28_007420 PF00665 Integrase core domain ABE28_007420 PF13333 Integrase core domain ABE28_007430 PF05636 HIGH Nucleotidyl Transferase ABE28_007435 PF02620 Large ribosomal RNA subunit accumulation protein YceD ABE28_007440 PF01783 Ribosomal L32p protein family ABE28_007445 PF00378 Enoyl-CoA hydratase/isomerase ABE28_007455 PF00583 Acetyltransferase (GNAT) family ABE28_007460 PF08546 Ketopantoate reductase PanE/ApbA C terminal ABE28_007460 PF02558 Ketopantoate reductase PanE/ApbA ABE28_007470 PF10079 Bacillithiol biosynthesis BshC ABE28_007475 PF02381 MraZ protein, putative antitoxin-like ABE28_007480 PF01795 MraW methylase family ABE28_007485 PF04977 Septum formation initiator ABE28_007495 PF00905 Penicillin binding protein transpeptidase domain ABE28_007495 PF03717 Penicillin-binding Protein dimerisation domain ABE28_007495 PF03793 PASTA domain ABE28_007500 PF01225 Mur ligase family, catalytic domain ABE28_007500 PF08245 Mur ligase middle domain ABE28_007500 PF02875 Mur ligase family, glutamate ligase domain ABE28_007505 PF00953 Glycosyl transferase family 4 ABE28_007505 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ABE28_007510 PF08245 Mur ligase middle domain ABE28_007510 PF02875 Mur ligase family, glutamate ligase domain ABE28_007515 PF01098 Cell cycle protein ABE28_007520 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABE28_007520 PF01565 FAD binding domain ABE28_007525 PF08478 POTRA domain, FtsQ-type ABE28_007530 PF02491 SHS2 domain inserted in FTSA ABE28_007535 PF12327 FtsZ family, C-terminal domain ABE28_007535 PF00091 Tubulin/FtsZ family, GTPase domain ABE28_007540 PF03419 Sporulation factor SpoIIGA ABE28_007545 PF04545 Sigma-70, region 4 ABE28_007545 PF04542 Sigma-70 region 2 ABE28_007550 PF04539 Sigma-70 region 3 ABE28_007550 PF04545 Sigma-70, region 4 ABE28_007550 PF04542 Sigma-70 region 2 ABE28_007555 PF05239 PRC-barrel domain ABE28_007565 PF01168 Alanine racemase, N-terminal domain ABE28_007570 PF04472 Cell division protein SepF ABE28_007575 PF02325 YGGT family ABE28_007580 PF01479 S4 domain ABE28_007580 PF17774 Putative RNA-binding domain in YlmH ABE28_007585 PF05103 DivIVA protein ABE28_007590 PF08264 Anticodon-binding domain of tRNA ABE28_007590 PF06827 Zinc finger found in FPG and IleRS ABE28_007590 PF00133 tRNA synthetases class I (I, L, M and V) ABE28_007595 PF01252 Signal peptidase (SPase) II ABE28_007600 PF01479 S4 domain ABE28_007600 PF00849 RNA pseudouridylate synthase ABE28_007605 PF00156 Phosphoribosyl transferase domain ABE28_007610 PF00860 Permease family ABE28_007615 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABE28_007615 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABE28_007620 PF01979 Amidohydrolase family ABE28_007625 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABE28_007625 PF00117 Glutamine amidotransferase class-I ABE28_007630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABE28_007630 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABE28_007630 PF02142 MGS-like domain ABE28_007635 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ABE28_007640 PF01180 Dihydroorotate dehydrogenase ABE28_007645 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABE28_007650 PF00156 Phosphoribosyl transferase domain ABE28_007660 PF00689 Cation transporting ATPase, C-terminus ABE28_007660 PF00690 Cation transporter/ATPase, N-terminus ABE28_007665 PF08340 Domain of unknown function (DUF1732) ABE28_007665 PF03755 YicC-like family, N-terminal region ABE28_007670 PF04025 Domain of unknown function (DUF370) ABE28_007675 PF00625 Guanylate kinase ABE28_007680 PF01192 RNA polymerase Rpb6 ABE28_007685 PF04127 DNA / pantothenate metabolism flavoprotein ABE28_007685 PF02441 Flavoprotein ABE28_007690 PF04851 Type III restriction enzyme, res subunit ABE28_007690 PF00271 Helicase conserved C-terminal domain ABE28_007690 PF18074 Primosomal protein N C-terminal domain ABE28_007690 PF17764 3′ DNA-binding domain (3′BD) ABE28_007690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABE28_007695 PF01327 Polypeptide deformylase ABE28_007700 PF00551 Formyl transferase ABE28_007700 PF02911 Formyl transferase, C-terminal domain ABE28_007705 PF01029 NusB family ABE28_007705 PF01189 16S rRNA methyltransferase RsmB/F ABE28_007710 PF04055 Radical SAM superfamily ABE28_007720 PF03793 PASTA domain ABE28_007720 PF00069 Protein kinase domain ABE28_007725 PF03193 RsgA GTPase ABE28_007725 PF16745 RsgA N-terminal domain ABE28_007730 PF00834 Ribulose-phosphate 3 epimerase family ABE28_007735 PF04263 Thiamin pyrophosphokinase, catalytic domain ABE28_007735 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain ABE28_007740 PF08183 Stage V sporulation protein family ABE28_007745 PF00830 Ribosomal L28 family ABE28_007750 PF03780 Asp23 family, cell envelope-related function ABE28_007755 PF13684 Dihydroxyacetone kinase family ABE28_007755 PF02734 DAK2 domain ABE28_007760 PF03315 Serine dehydratase beta chain ABE28_007760 PF01842 ACT domain ABE28_007765 PF03313 Serine dehydratase alpha chain ABE28_007770 PF00270 DEAD/DEAH box helicase ABE28_007770 PF17191 RecG wedge domain ABE28_007770 PF00271 Helicase conserved C-terminal domain ABE28_007775 PF01575 MaoC like domain ABE28_007775 PF08279 HTH domain ABE28_007780 PF02504 Fatty acid synthesis protein ABE28_007785 PF00698 Acyl transferase domain ABE28_007795 PF00550 Phosphopantetheine attachment site ABE28_007800 PF14622 Ribonuclease-III-like ABE28_007800 PF00035 Double-stranded RNA binding motif ABE28_007805 PF06470 SMC proteins Flexible Hinge Domain ABE28_007805 PF02463 RecF/RecN/SMC N terminal domain ABE28_007810 PF00448 SRP54-type protein, GTPase domain ABE28_007810 PF02881 SRP54-type protein, helical bundle domain ABE28_007820 PF04297 Putative helix-turn-helix protein, YlxM / p13 like ABE28_007825 PF02881 SRP54-type protein, helical bundle domain ABE28_007825 PF00448 SRP54-type protein, GTPase domain ABE28_007825 PF02978 Signal peptide binding domain ABE28_007830 PF00886 Ribosomal protein S16 ABE28_007845 PF05239 PRC-barrel domain ABE28_007845 PF01782 RimM N-terminal domain ABE28_007850 PF01746 tRNA (Guanine-1)-methyltransferase ABE28_007855 PF01245 Ribosomal protein L19 ABE28_007860 PF10502 Signal peptidase, peptidase S26 ABE28_007865 PF01926 50S ribosome-binding GTPase ABE28_007870 PF01351 Ribonuclease HII ABE28_007880 PF01312 FlhB HrpN YscU SpaS Family ABE28_007885 PF00549 CoA-ligase ABE28_007885 PF08442 ATP-grasp domain ABE28_007890 PF00549 CoA-ligase ABE28_007890 PF02629 CoA binding domain ABE28_007895 PF02481 DNA recombination-mediator protein A ABE28_007900 PF01396 Topoisomerase DNA binding C4 zinc finger ABE28_007900 PF01751 Toprim domain ABE28_007900 PF01131 DNA topoisomerase ABE28_007905 PF01134 Glucose inhibited division protein A ABE28_007910 PF02899 Phage integrase, N-terminal SAM-like domain ABE28_007910 PF00589 Phage integrase family ABE28_007915 PF00227 Proteasome subunit ABE28_007920 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_007920 PF07724 AAA domain (Cdc48 subfamily) ABE28_007920 PF10431 C-terminal, D2-small domain, of ClpB protein ABE28_007925 PF06018 CodY GAF-like domain ABE28_007925 PF08222 CodY helix-turn-helix domain ABE28_007930 PF00460 Flagella basal body rod protein ABE28_007935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABE28_007935 PF00460 Flagella basal body rod protein ABE28_007940 PF02049 Flagellar hook-basal body complex protein FliE ABE28_007945 PF08345 Flagellar M-ring protein C-terminal ABE28_007945 PF01514 Secretory protein of YscJ/FliF family ABE28_007950 PF14842 FliG N-terminal domain ABE28_007950 PF14841 FliG middle domain ABE28_007950 PF01706 FliG C-terminal domain ABE28_007955 PF02108 Flagellar assembly protein FliH ABE28_007960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABE28_007960 PF18269 T3SS EscN ATPase C-terminal domain ABE28_007960 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABE28_007965 PF02050 Flagellar FliJ protein ABE28_007980 PF03963 Flagellar hook capping protein - N-terminal region ABE28_007990 PF07559 Flagellar basal body protein FlaE ABE28_007990 PF00460 Flagella basal body rod protein ABE28_007990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABE28_007995 PF06289 Flagellar and Swarming motility proteins ABE28_008000 PF03748 Flagellar basal body-associated protein FliL ABE28_008005 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABE28_008005 PF02154 Flagellar motor switch protein FliM ABE28_008010 PF04509 CheC-like family ABE28_008010 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ABE28_008015 PF00072 Response regulator receiver domain ABE28_008020 PF04347 Flagellar biosynthesis protein, FliO ABE28_008025 PF00813 FliP family ABE28_008030 PF01313 Bacterial export proteins, family 3 ABE28_008035 PF01311 Bacterial export proteins, family 1 ABE28_008040 PF01312 FlhB HrpN YscU SpaS Family ABE28_008045 PF00771 FHIPEP family ABE28_008050 PF00448 SRP54-type protein, GTPase domain ABE28_008055 PF10609 NUBPL iron-transfer P-loop NTPase ABE28_008060 PF00072 Response regulator receiver domain ABE28_008060 PF01339 CheB methylesterase ABE28_008065 PF01584 CheW-like domain ABE28_008065 PF02895 Signal transducing histidine kinase, homodimeric domain ABE28_008065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_008065 PF07194 P2 response regulator binding domain ABE28_008065 PF01627 Hpt domain ABE28_008070 PF01584 CheW-like domain ABE28_008075 PF04509 CheC-like family ABE28_008080 PF03975 CheD chemotactic sensory transduction ABE28_008085 PF04542 Sigma-70 region 2 ABE28_008085 PF04539 Sigma-70 region 3 ABE28_008085 PF04545 Sigma-70, region 4 ABE28_008095 PF00318 Ribosomal protein S2 ABE28_008100 PF00889 Elongation factor TS ABE28_008105 PF00696 Amino acid kinase family ABE28_008110 PF01765 Ribosome recycling factor ABE28_008115 PF01255 Putative undecaprenyl diphosphate synthase ABE28_008125 PF13288 DXP reductoisomerase C-terminal domain ABE28_008125 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABE28_008125 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABE28_008130 PF13180 PDZ domain ABE28_008130 PF02163 Peptidase family M50 ABE28_008135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABE28_008135 PF04073 Aminoacyl-tRNA editing domain ABE28_008135 PF03129 Anticodon binding domain ABE28_008140 PF02811 PHP domain ABE28_008140 PF14579 Helix-hairpin-helix motif ABE28_008140 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABE28_008140 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABE28_008140 PF11490 DNA polymerase III polC-type N-terminus II ABE28_008140 PF00929 Exonuclease ABE28_008140 PF14480 DNA polymerase III polC-type N-terminus I ABE28_008145 PF17384 RimP C-terminal SH3 domain ABE28_008145 PF02576 RimP N-terminal domain ABE28_008150 PF00575 S1 RNA binding domain ABE28_008150 PF08529 NusA N-terminal domain ABE28_008150 PF13184 NusA-like KH domain ABE28_008155 PF04296 Protein of unknown function (DUF448) ABE28_008160 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ABE28_008165 PF00009 Elongation factor Tu GTP binding domain ABE28_008165 PF11987 Translation-initiation factor 2 ABE28_008165 PF04760 Translation initiation factor IF-2, N-terminal region ABE28_008170 PF04456 Protein of unknown function (DUF503) ABE28_008175 PF02033 Ribosome-binding factor A ABE28_008180 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABE28_008180 PF16198 tRNA pseudouridylate synthase B C-terminal domain ABE28_008185 PF01687 Riboflavin kinase ABE28_008185 PF06574 FAD synthetase ABE28_008190 PF00312 Ribosomal protein S15 ABE28_008195 PF00575 S1 RNA binding domain ABE28_008195 PF01138 3' exoribonuclease family, domain 1 ABE28_008195 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABE28_008195 PF00013 KH domain ABE28_008195 PF03725 3' exoribonuclease family, domain 2 ABE28_008200 PF01522 Polysaccharide deacetylase ABE28_008205 PF05193 Peptidase M16 inactive domain ABE28_008205 PF00675 Insulinase (Peptidase family M16) ABE28_008210 PF05239 PRC-barrel domain ABE28_008215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ABE28_008215 PF16924 Dipicolinate synthase subunit A N-terminal domain ABE28_008220 PF02441 Flavoprotein ABE28_008225 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABE28_008225 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABE28_008230 PF00696 Amino acid kinase family ABE28_008230 PF13840 ACT domain ABE28_008235 PF00701 Dihydrodipicolinate synthetase family ABE28_008240 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ABE28_008240 PF17770 Ribonuclease J C-terminal domain ABE28_008240 PF00753 Metallo-beta-lactamase superfamily ABE28_008245 PF00574 Clp protease ABE28_008255 PF01580 FtsK/SpoIIIE family ABE28_008255 PF09397 Ftsk gamma domain ABE28_008255 PF17854 FtsK alpha domain ABE28_008265 PF00392 Bacterial regulatory proteins, gntR family ABE28_008265 PF07702 UTRA domain ABE28_008290 PF05193 Peptidase M16 inactive domain ABE28_008295 PF00675 Insulinase (Peptidase family M16) ABE28_008295 PF05193 Peptidase M16 inactive domain ABE28_008305 PF11588 Protein of unknown function (DUF3243) ABE28_008310 PF11868 Protein of unknown function (DUF3388) ABE28_008315 PF13464 Domain of unknown function (DUF4115) ABE28_008320 PF01066 CDP-alcohol phosphatidyltransferase ABE28_008325 PF02464 Competence-damaged protein ABE28_008325 PF18146 Damage-inducible protein CinA KH domain ABE28_008325 PF00994 Probable molybdopterin binding domain ABE28_008330 PF00154 recA bacterial DNA recombination protein ABE28_008335 PF01966 HD domain ABE28_008335 PF00013 KH domain ABE28_008335 PF12072 Domain of unknown function (DUF3552) ABE28_008340 PF13277 YmdB-like protein ABE28_008345 PF04232 Stage V sporulation protein S (SpoVS) ABE28_008355 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase ABE28_008355 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II ABE28_008355 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ABE28_008360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABE28_008365 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_008365 PF00107 Zinc-binding dehydrogenase ABE28_008370 PF01938 TRAM domain ABE28_008370 PF04055 Radical SAM superfamily ABE28_008370 PF00919 Uncharacterized protein family UPF0004 ABE28_008375 PF06133 Control of competence regulator ComK, YlbF/YmcA ABE28_008380 PF10628 Outer spore coat protein E (CotE) ABE28_008385 PF05190 MutS family domain IV ABE28_008385 PF01624 MutS domain I ABE28_008385 PF05188 MutS domain II ABE28_008385 PF00488 MutS domain V ABE28_008385 PF05192 MutS domain III ABE28_008390 PF08676 MutL C terminal dimerisation domain ABE28_008390 PF01119 DNA mismatch repair protein, C-terminal domain ABE28_008395 PF00485 Phosphoribulokinase / Uridine kinase family ABE28_008410 PF07687 Peptidase dimerisation domain ABE28_008410 PF01546 Peptidase family M20/M25/M40 ABE28_008415 PF07687 Peptidase dimerisation domain ABE28_008415 PF01546 Peptidase family M20/M25/M40 ABE28_008420 PF00392 Bacterial regulatory proteins, gntR family ABE28_008420 PF07729 FCD domain ABE28_008425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABE28_008425 PF13378 Enolase C-terminal domain-like ABE28_008430 PF07690 Major Facilitator Superfamily ABE28_008435 PF03737 Aldolase/RraA ABE28_008445 PF02525 Flavodoxin-like fold ABE28_008450 PF02082 Transcriptional regulator ABE28_008470 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABE28_008480 PF07883 Cupin domain ABE28_008485 PF01494 FAD binding domain ABE28_008490 PF02126 Phosphotriesterase family ABE28_008510 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ABE28_008510 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ABE28_008515 PF00753 Metallo-beta-lactamase superfamily ABE28_008520 PF01144 Coenzyme A transferase ABE28_008525 PF01144 Coenzyme A transferase ABE28_008535 PF07690 Major Facilitator Superfamily ABE28_008540 PF01494 FAD binding domain ABE28_008545 PF07859 alpha/beta hydrolase fold ABE28_008550 PF07690 Major Facilitator Superfamily ABE28_008555 PF00753 Metallo-beta-lactamase superfamily ABE28_008555 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABE28_008565 PF01546 Peptidase family M20/M25/M40 ABE28_008565 PF07687 Peptidase dimerisation domain ABE28_008570 PF03458 UPF0126 domain ABE28_008575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABE28_008585 PF00258 Flavodoxin ABE28_008595 PF02557 D-alanyl-D-alanine carboxypeptidase ABE28_008600 PF00512 His Kinase A (phospho-acceptor) domain ABE28_008600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_008605 PF00072 Response regulator receiver domain ABE28_008605 PF00486 Transcriptional regulatory protein, C terminal ABE28_008615 PF03169 OPT oligopeptide transporter protein ABE28_008625 PF02954 Bacterial regulatory protein, Fis family ABE28_008625 PF00989 PAS fold ABE28_008625 PF00158 Sigma-54 interaction domain ABE28_008630 PF03606 C4-dicarboxylate anaerobic carrier ABE28_008635 PF01979 Amidohydrolase family ABE28_008645 PF03575 Peptidase family S51 ABE28_008660 PF13537 Glutamine amidotransferase domain ABE28_008660 PF00733 Asparagine synthase ABE28_008670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_008675 PF02378 Phosphotransferase system, EIIC ABE28_008680 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ABE28_008685 PF11975 Family 4 glycosyl hydrolase C-terminal domain ABE28_008685 PF02056 Family 4 glycosyl hydrolase ABE28_008690 PF04794 YdjC-like protein ABE28_008695 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_008700 PF07849 Protein of unknown function (DUF1641) ABE28_008715 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ABE28_008715 PF17203 Single cache domain 3 ABE28_008715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_008725 PF17209 Hfq protein ABE28_008730 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_008730 PF17866 AAA lid domain ABE28_008735 PF03458 UPF0126 domain ABE28_008740 PF01926 50S ribosome-binding GTPase ABE28_008740 PF13167 GTP-binding GTPase N-terminal ABE28_008740 PF16360 GTP-binding GTPase Middle Region ABE28_008745 PF06838 Methionine gamma-lyase ABE28_008750 PF13411 MerR HTH family regulatory protein ABE28_008755 PF00120 Glutamine synthetase, catalytic domain ABE28_008755 PF03951 Glutamine synthetase, beta-Grasp domain ABE28_008760 PF14659 Phage integrase, N-terminal SAM-like domain ABE28_008760 PF00589 Phage integrase family ABE28_008830 PF13443 Cro/C1-type HTH DNA-binding domain ABE28_008875 PF00436 Single-strand binding protein family ABE28_009005 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ABE28_009005 PF01476 LysM domain ABE28_009075 PF13539 D-alanyl-D-alanine carboxypeptidase ABE28_009125 PF07261 Replication initiation and membrane attachment ABE28_009155 PF08281 Sigma-70, region 4 ABE28_009170 PF09639 YjcQ protein ABE28_009185 PF13276 HTH-like domain ABE28_009185 PF00665 Integrase core domain ABE28_009185 PF13333 Integrase core domain ABE28_009290 PF00753 Metallo-beta-lactamase superfamily ABE28_009290 PF13567 Domain of unknown function (DUF4131) ABE28_009290 PF03772 Competence protein ABE28_009315 PF00772 DnaB-like helicase N terminal domain ABE28_009315 PF03796 DnaB-like helicase C terminal domain ABE28_009355 PF13276 HTH-like domain ABE28_009355 PF13333 Integrase core domain ABE28_009355 PF00665 Integrase core domain ABE28_009395 PF01910 Thiamine-binding protein ABE28_009410 PF11188 Protein of unknown function (DUF2975) ABE28_009415 PF13443 Cro/C1-type HTH DNA-binding domain ABE28_009420 PF05675 Protein of unknown function (DUF817) ABE28_009425 PF00268 Ribonucleotide reductase, small chain ABE28_009435 PF00072 Response regulator receiver domain ABE28_009435 PF00486 Transcriptional regulatory protein, C terminal ABE28_009440 PF00512 His Kinase A (phospho-acceptor) domain ABE28_009440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_009455 PF01546 Peptidase family M20/M25/M40 ABE28_009460 PF01546 Peptidase family M20/M25/M40 ABE28_009460 PF07687 Peptidase dimerisation domain ABE28_009465 PF03806 AbgT putative transporter family ABE28_009480 PF03845 Spore germination protein ABE28_009510 PF13426 PAS domain ABE28_009510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_009510 PF08447 PAS fold ABE28_009535 PF01183 Glycosyl hydrolases family 25 ABE28_009535 PF08239 Bacterial SH3 domain ABE28_009540 PF03741 Integral membrane protein TerC family ABE28_009555 PF00388 Phosphatidylinositol-specific phospholipase C, X domain ABE28_009560 PF12704 MacB-like periplasmic core domain ABE28_009560 PF02687 FtsX-like permease family ABE28_009565 PF00005 ABC transporter ABE28_009570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_009570 PF00672 HAMP domain ABE28_009570 PF00512 His Kinase A (phospho-acceptor) domain ABE28_009575 PF00486 Transcriptional regulatory protein, C terminal ABE28_009575 PF00072 Response regulator receiver domain ABE28_009580 PF03845 Spore germination protein ABE28_009585 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_009590 PF05504 Spore germination B3/ GerAC like, C-terminal ABE28_009595 PF00196 Bacterial regulatory proteins, luxR family ABE28_009595 PF00072 Response regulator receiver domain ABE28_009630 PF00561 alpha/beta hydrolase fold ABE28_009630 PF00106 short chain dehydrogenase ABE28_009635 PF13411 MerR HTH family regulatory protein ABE28_009650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_009655 PF00149 Calcineurin-like phosphoesterase ABE28_009660 PF13302 Acetyltransferase (GNAT) domain ABE28_009665 PF03992 Antibiotic biosynthesis monooxygenase ABE28_009680 PF01545 Cation efflux family ABE28_009680 PF16916 Dimerisation domain of Zinc Transporter ABE28_009690 PF00440 Bacterial regulatory proteins, tetR family ABE28_009700 PF00557 Metallopeptidase family M24 ABE28_009700 PF01321 Creatinase/Prolidase N-terminal domain ABE28_009705 PF01968 Hydantoinase/oxoprolinase ABE28_009705 PF05378 Hydantoinase/oxoprolinase N-terminal region ABE28_009730 PF02378 Phosphotransferase system, EIIC ABE28_009745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_009750 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ABE28_009755 PF02525 Flavodoxin-like fold ABE28_009760 PF06335 Protein of unknown function (DUF1054) ABE28_009765 PF02082 Transcriptional regulator ABE28_009770 PF00676 Dehydrogenase E1 component ABE28_009775 PF02780 Transketolase, C-terminal domain ABE28_009775 PF02779 Transketolase, pyrimidine binding domain ABE28_009780 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_009785 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_009790 PF02525 Flavodoxin-like fold ABE28_009795 PF13460 NAD(P)H-binding ABE28_009800 PF01638 HxlR-like helix-turn-helix ABE28_009820 PF00171 Aldehyde dehydrogenase family ABE28_009830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_009830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_009840 PF00923 Transaldolase/Fructose-6-phosphate aldolase ABE28_009855 PF08713 DNA alkylation repair enzyme ABE28_009860 PF02378 Phosphotransferase system, EIIC ABE28_009860 PF00367 phosphotransferase system, EIIB ABE28_009865 PF00128 Alpha amylase, catalytic domain ABE28_009865 PF16657 Maltogenic Amylase, C-terminal domain ABE28_009870 PF07702 UTRA domain ABE28_009870 PF00392 Bacterial regulatory proteins, gntR family ABE28_009875 PF00893 Small Multidrug Resistance protein ABE28_009880 PF00893 Small Multidrug Resistance protein ABE28_009885 PF00712 DNA polymerase III beta subunit, N-terminal domain ABE28_009885 PF02768 DNA polymerase III beta subunit, C-terminal domain ABE28_009885 PF02767 DNA polymerase III beta subunit, central domain ABE28_009900 PF00989 PAS fold ABE28_009900 PF00512 His Kinase A (phospho-acceptor) domain ABE28_009900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_009900 PF13426 PAS domain ABE28_009900 PF13188 PAS domain ABE28_009905 PF05036 Sporulation related domain ABE28_009905 PF01520 N-acetylmuramoyl-L-alanine amidase ABE28_009915 PF01726 LexA DNA binding domain ABE28_009915 PF00717 Peptidase S24-like ABE28_009940 PF01476 LysM domain ABE28_009940 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ABE28_009945 PF01726 LexA DNA binding domain ABE28_009945 PF00717 Peptidase S24-like ABE28_009950 PF01476 LysM domain ABE28_009955 PF00239 Resolvase, N terminal domain ABE28_009960 PF05979 Bacterial protein of unknown function (DUF896) ABE28_009965 PF00456 Transketolase, thiamine diphosphate binding domain ABE28_009965 PF02779 Transketolase, pyrimidine binding domain ABE28_009965 PF02780 Transketolase, C-terminal domain ABE28_009970 PF10747 Sporulation inhibitor of replication protein SirA ABE28_009980 PF06271 RDD family ABE28_009995 PF00085 Thioredoxin ABE28_010000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABE28_010005 PF07681 DoxX ABE28_010010 PF01522 Polysaccharide deacetylase ABE28_010010 PF13739 Deacetylase PdaC ABE28_010010 PF11738 Protein of unknown function (DUF3298) ABE28_010025 PF02683 Cytochrome C biogenesis protein transmembrane region ABE28_010030 PF00072 Response regulator receiver domain ABE28_010035 PF07301 Protein of unknown function (DUF1453) ABE28_010040 PF04143 Sulphur transport ABE28_010045 PF01206 Sulfurtransferase TusA ABE28_010055 PF11084 Protein of unknown function (DUF2621) ABE28_010060 PF12320 Type 5 capsule protein repressor C-terminal domain ABE28_010060 PF00149 Calcineurin-like phosphoesterase ABE28_010065 PF13476 AAA domain ABE28_010080 PF00501 AMP-binding enzyme ABE28_010080 PF13193 AMP-binding enzyme C-terminal domain ABE28_010100 PF00108 Thiolase, N-terminal domain ABE28_010100 PF02803 Thiolase, C-terminal domain ABE28_010110 PF00501 AMP-binding enzyme ABE28_010110 PF13193 AMP-binding enzyme C-terminal domain ABE28_010120 PF00356 Bacterial regulatory proteins, lacI family ABE28_010125 PF01791 DeoC/LacD family aldolase ABE28_010130 PF07690 Major Facilitator Superfamily ABE28_010140 PF00294 pfkB family carbohydrate kinase ABE28_010150 PF13686 DsrE/DsrF/DrsH-like family ABE28_010160 PF00581 Rhodanese-like domain ABE28_010160 PF01206 Sulfurtransferase TusA ABE28_010165 PF00753 Metallo-beta-lactamase superfamily ABE28_010165 PF00581 Rhodanese-like domain ABE28_010170 PF01206 Sulfurtransferase TusA ABE28_010175 PF01925 Sulfite exporter TauE/SafE ABE28_010180 PF07883 Cupin domain ABE28_010180 PF01381 Helix-turn-helix ABE28_010185 PF01810 LysE type translocator ABE28_010200 PF00881 Nitroreductase family ABE28_010210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_010210 PF02743 Cache domain ABE28_010210 PF00672 HAMP domain ABE28_010215 PF13732 Domain of unknown function (DUF4162) ABE28_010215 PF00005 ABC transporter ABE28_010235 PF13229 Right handed beta helix region ABE28_010240 PF07690 Major Facilitator Superfamily ABE28_010255 PF01047 MarR family ABE28_010260 PF07690 Major Facilitator Superfamily ABE28_010270 PF17151 Periplasmic sensor domain ABE28_010270 PF00990 Diguanylate cyclase, GGDEF domain ABE28_010290 PF00072 Response regulator receiver domain ABE28_010290 PF00486 Transcriptional regulatory protein, C terminal ABE28_010295 PF18698 Histidine kinase sensor domain ABE28_010295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_010295 PF00672 HAMP domain ABE28_010295 PF00512 His Kinase A (phospho-acceptor) domain ABE28_010295 PF00989 PAS fold ABE28_010300 PF13457 GW (Gly-Tryp) dipeptide domain ABE28_010300 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ABE28_010305 PF02583 Metal-sensitive transcriptional repressor ABE28_010310 PF00403 Heavy-metal-associated domain ABE28_010315 PF00403 Heavy-metal-associated domain ABE28_010330 PF00005 ABC transporter ABE28_010330 PF13732 Domain of unknown function (DUF4162) ABE28_010335 PF12679 ABC-2 family transporter protein ABE28_010340 PF01098 Cell cycle protein ABE28_010345 PF00440 Bacterial regulatory proteins, tetR family ABE28_010350 PF01965 DJ-1/PfpI family ABE28_010365 PF09423 PhoD-like phosphatase ABE28_010365 PF16655 PhoD-like phosphatase, N-terminal domain ABE28_010370 PF02416 mttA/Hcf106 family ABE28_010375 PF00902 Sec-independent protein translocase protein (TatC) ABE28_010385 PF00324 Amino acid permease ABE28_010395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABE28_010395 PF00205 Thiamine pyrophosphate enzyme, central domain ABE28_010395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABE28_010400 PF00202 Aminotransferase class-III ABE28_010405 PF02585 GlcNAc-PI de-N-acetylase ABE28_010410 PF03601 Conserved hypothetical protein 698 ABE28_010415 PF07840 FadR C-terminal domain ABE28_010415 PF00392 Bacterial regulatory proteins, gntR family ABE28_010425 PF01047 MarR family ABE28_010430 PF00676 Dehydrogenase E1 component ABE28_010435 PF02780 Transketolase, C-terminal domain ABE28_010435 PF02779 Transketolase, pyrimidine binding domain ABE28_010440 PF04439 Streptomycin adenylyltransferase ABE28_010445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_010455 PF05593 RHS Repeat ABE28_010480 PF02567 Phenazine biosynthesis-like protein ABE28_010485 PF08818 Domain of unknown function (DU1801) ABE28_010500 PF00293 NUDIX domain ABE28_010510 PF07690 Major Facilitator Superfamily ABE28_010515 PF01565 FAD binding domain ABE28_010525 PF17392 Urocanase C-terminal domain ABE28_010525 PF17391 Urocanase N-terminal domain ABE28_010525 PF01175 Urocanase Rossmann-like domain ABE28_010530 PF01979 Amidohydrolase family ABE28_010535 PF07690 Major Facilitator Superfamily ABE28_010540 PF00083 Sugar (and other) transporter ABE28_010545 PF00221 Aromatic amino acid lyase ABE28_010550 PF01266 FAD dependent oxidoreductase ABE28_010555 PF03746 LamB/YcsF family ABE28_010560 PF01566 Natural resistance-associated macrophage protein ABE28_010565 PF07286 Protein of unknown function (DUF1445) ABE28_010570 PF02682 Carboxyltransferase domain, subdomain C and D ABE28_010575 PF02626 Carboxyltransferase domain, subdomain A and B ABE28_010580 PF09339 IclR helix-turn-helix domain ABE28_010580 PF01614 Bacterial transcriptional regulator ABE28_010595 PF03466 LysR substrate binding domain ABE28_010595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_010600 PF00491 Arginase family ABE28_010605 PF02586 SOS response associated peptidase (SRAP) ABE28_010615 PF01235 Sodium:alanine symporter family ABE28_010625 PF07685 CobB/CobQ-like glutamine amidotransferase domain ABE28_010625 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ABE28_010630 PF00216 Bacterial DNA-binding protein ABE28_010635 PF00069 Protein kinase domain ABE28_010640 PF18416 N-acetylglucosamine binding protein domain 2 ABE28_010640 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ABE28_010645 PF03070 TENA/THI-4/PQQC family ABE28_010650 PF09819 ABC-type cobalt transport system, permease component ABE28_010655 PF00005 ABC transporter ABE28_010665 PF02581 Thiamine monophosphate synthase ABE28_010670 PF01266 FAD dependent oxidoreductase ABE28_010675 PF05690 Thiazole biosynthesis protein ThiG ABE28_010675 PF02597 ThiS family ABE28_010680 PF05690 Thiazole biosynthesis protein ThiG ABE28_010685 PF00899 ThiF family ABE28_010690 PF08179 Small acid-soluble spore protein P family ABE28_010705 PF00694 Aconitase C-terminal domain ABE28_010705 PF00330 Aconitase family (aconitate hydratase) ABE28_010710 PF00578 AhpC/TSA family ABE28_010715 PF08177 Small acid-soluble spore protein N family ABE28_010725 PF03061 Thioesterase superfamily ABE28_010735 PF01521 Iron-sulphur cluster biosynthesis ABE28_010740 PF09297 NADH pyrophosphatase zinc ribbon domain ABE28_010740 PF00293 NUDIX domain ABE28_010745 PF14174 YycC-like protein ABE28_010755 PF02660 Glycerol-3-phosphate acyltransferase ABE28_010760 PF13380 CoA binding domain ABE28_010765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_010765 PF01751 Toprim domain ABE28_010765 PF00986 DNA gyrase B subunit, carboxyl terminus ABE28_010765 PF00204 DNA gyrase B ABE28_010770 PF03989 DNA gyrase C-terminal domain, beta-propeller ABE28_010770 PF00521 DNA gyrase/topoisomerase IV, subunit A ABE28_010775 PF13193 AMP-binding enzyme C-terminal domain ABE28_010775 PF00501 AMP-binding enzyme ABE28_010780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_010780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_010780 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_010785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_010785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_010785 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_010795 PF13452 N-terminal half of MaoC dehydratase ABE28_010805 PF00158 Sigma-54 interaction domain ABE28_010810 PF01380 SIS domain ABE28_010815 PF01380 SIS domain ABE28_010815 PF01418 Helix-turn-helix domain, rpiR family ABE28_010820 PF00367 phosphotransferase system, EIIB ABE28_010820 PF02378 Phosphotransferase system, EIIC ABE28_010830 PF01915 Glycosyl hydrolase family 3 C-terminal domain ABE28_010830 PF00933 Glycosyl hydrolase family 3 N terminal domain ABE28_010835 PF07075 Protein of unknown function (DUF1343) ABE28_010840 PF00367 phosphotransferase system, EIIB ABE28_010840 PF02378 Phosphotransferase system, EIIC ABE28_010850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ABE28_010850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ABE28_010855 PF07690 Major Facilitator Superfamily ABE28_010865 PF13193 AMP-binding enzyme C-terminal domain ABE28_010865 PF00501 AMP-binding enzyme ABE28_010875 PF01979 Amidohydrolase family ABE28_010880 PF03841 L-seryl-tRNA selenium transferase ABE28_010885 PF07071 KDGP aldolase ABE28_010895 PF00392 Bacterial regulatory proteins, gntR family ABE28_010895 PF07702 UTRA domain ABE28_010900 PF02447 GntP family permease ABE28_010905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_010905 PF03466 LysR substrate binding domain ABE28_010910 PF00175 Oxidoreductase NAD-binding domain ABE28_010910 PF00258 Flavodoxin ABE28_010910 PF00667 FAD binding domain ABE28_010915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABE28_010915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABE28_010925 PF03845 Spore germination protein ABE28_010930 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_010935 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_010940 PF03845 Spore germination protein ABE28_010945 PF05504 Spore germination B3/ GerAC like, C-terminal ABE28_010950 PF01593 Flavin containing amine oxidoreductase ABE28_010955 PF01654 Cytochrome bd terminal oxidase subunit I ABE28_010960 PF02322 Cytochrome bd terminal oxidase subunit II ABE28_010970 PF00440 Bacterial regulatory proteins, tetR family ABE28_010975 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_010975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_010975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_010980 PF00501 AMP-binding enzyme ABE28_010980 PF13193 AMP-binding enzyme C-terminal domain ABE28_010985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABE28_010985 PF00289 Biotin carboxylase, N-terminal domain ABE28_010985 PF02785 Biotin carboxylase C-terminal domain ABE28_010990 PF00364 Biotin-requiring enzyme ABE28_010995 PF00682 HMGL-like ABE28_011000 PF00378 Enoyl-CoA hydratase/isomerase ABE28_011005 PF01039 Carboxyl transferase domain ABE28_011015 PF00857 Isochorismatase family ABE28_011020 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain ABE28_011020 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ABE28_011020 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABE28_011025 PF02540 NAD synthase ABE28_011055 PF16888 Domain of unknown function (DUF5082) ABE28_011065 PF02378 Phosphotransferase system, EIIC ABE28_011065 PF00367 phosphotransferase system, EIIB ABE28_011075 PF05901 Excalibur calcium-binding domain ABE28_011075 PF00565 Staphylococcal nuclease homologue ABE28_011090 PF13539 D-alanyl-D-alanine carboxypeptidase ABE28_011100 PF07690 Major Facilitator Superfamily ABE28_011105 PF02378 Phosphotransferase system, EIIC ABE28_011105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_011110 PF00874 PRD domain ABE28_011110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_011110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABE28_011110 PF05043 Mga helix-turn-helix domain ABE28_011110 PF08279 HTH domain ABE28_011115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABE28_011115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABE28_011120 PF00107 Zinc-binding dehydrogenase ABE28_011120 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_011145 PF00296 Luciferase-like monooxygenase ABE28_011150 PF00583 Acetyltransferase (GNAT) family ABE28_011160 PF00072 Response regulator receiver domain ABE28_011160 PF00486 Transcriptional regulatory protein, C terminal ABE28_011165 PF01497 Periplasmic binding protein ABE28_011170 PF01032 FecCD transport family ABE28_011175 PF01032 FecCD transport family ABE28_011180 PF00005 ABC transporter ABE28_011215 PF13039 Protein of unknown function (DUF3900) ABE28_011215 PF13037 Domain of unknown function (DUF3898) ABE28_011220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_011225 PF02416 mttA/Hcf106 family ABE28_011235 PF07690 Major Facilitator Superfamily ABE28_011245 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ABE28_011250 PF00892 EamA-like transporter family ABE28_011255 PF12706 Beta-lactamase superfamily domain ABE28_011260 PF14171 Toxin SpoIISA, type II toxin-antitoxin system ABE28_011270 PF03707 Bacterial signalling protein N terminal repeat ABE28_011270 PF00990 Diguanylate cyclase, GGDEF domain ABE28_011270 PF00563 EAL domain ABE28_011280 PF01679 Proteolipid membrane potential modulator ABE28_011310 PF01943 Polysaccharide biosynthesis protein ABE28_011320 PF00324 Amino acid permease ABE28_011325 PF00491 Arginase family ABE28_011340 PF07969 Amidohydrolase family ABE28_011345 PF01546 Peptidase family M20/M25/M40 ABE28_011345 PF07687 Peptidase dimerisation domain ABE28_011350 PF11755 Protein of unknown function (DUF3311) ABE28_011355 PF00474 Sodium:solute symporter family ABE28_011360 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain ABE28_011360 PF00877 NlpC/P60 family ABE28_011365 PF10057 Uncharacterized conserved protein (DUF2294) ABE28_011370 PF03814 Potassium-transporting ATPase A subunit ABE28_011380 PF02669 K+-transporting ATPase, c chain ABE28_011385 PF02702 Osmosensitive K+ channel His kinase sensor domain ABE28_011390 PF00326 Prolyl oligopeptidase family ABE28_011395 PF00999 Sodium/hydrogen exchanger family ABE28_011400 PF01209 ubiE/COQ5 methyltransferase family ABE28_011425 PF08803 Putative mono-oxygenase ydhR ABE28_011455 PF02457 DisA bacterial checkpoint controller nucleotide-binding ABE28_011455 PF10372 Bacterial membrane-spanning protein N-terminus ABE28_011460 PF00557 Metallopeptidase family M24 ABE28_011475 PF01926 50S ribosome-binding GTPase ABE28_011475 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABE28_011480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_011480 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_011480 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABE28_011485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_011485 PF00512 His Kinase A (phospho-acceptor) domain ABE28_011490 PF13193 AMP-binding enzyme C-terminal domain ABE28_011490 PF00501 AMP-binding enzyme ABE28_011495 PF03060 Nitronate monooxygenase ABE28_011515 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABE28_011525 PF00171 Aldehyde dehydrogenase family ABE28_011535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ABE28_011545 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ABE28_011545 PF03480 Bacterial extracellular solute-binding protein, family 7 ABE28_011550 PF08666 SAF domain ABE28_011550 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ABE28_011555 PF08666 SAF domain ABE28_011555 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ABE28_011565 PF06628 Catalase-related immune-responsive ABE28_011565 PF00199 Catalase ABE28_011570 PF02056 Family 4 glycosyl hydrolase ABE28_011570 PF11975 Family 4 glycosyl hydrolase C-terminal domain ABE28_011575 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ABE28_011580 PF00480 ROK family ABE28_011590 PF02378 Phosphotransferase system, EIIC ABE28_011595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_011600 PF00232 Glycosyl hydrolase family 1 ABE28_011605 PF01380 SIS domain ABE28_011605 PF00571 CBS domain ABE28_011620 PF08244 Glycosyl hydrolases family 32 C terminal ABE28_011620 PF00251 Glycosyl hydrolases family 32 N-terminal domain ABE28_011625 PF00356 Bacterial regulatory proteins, lacI family ABE28_011630 PF01306 LacY proton/sugar symporter ABE28_011640 PF00294 pfkB family carbohydrate kinase ABE28_011645 PF00251 Glycosyl hydrolases family 32 N-terminal domain ABE28_011645 PF08244 Glycosyl hydrolases family 32 C terminal ABE28_011650 PF01306 LacY proton/sugar symporter ABE28_011655 PF00356 Bacterial regulatory proteins, lacI family ABE28_011665 PF02754 Cysteine-rich domain ABE28_011665 PF13183 4Fe-4S dicluster domain ABE28_011670 PF02913 FAD linked oxidases, C-terminal domain ABE28_011670 PF01565 FAD binding domain ABE28_011675 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_011680 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_011700 PF02954 Bacterial regulatory protein, Fis family ABE28_011700 PF00072 Response regulator receiver domain ABE28_011700 PF00158 Sigma-54 interaction domain ABE28_011705 PF00512 His Kinase A (phospho-acceptor) domain ABE28_011705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_011705 PF00989 PAS fold ABE28_011720 PF00686 Starch binding domain ABE28_011720 PF01373 Glycosyl hydrolase family 14 ABE28_011725 PF04308 Ribonuclease H-like ABE28_011730 PF10752 Protein of unknown function (DUF2533) ABE28_011740 PF07690 Major Facilitator Superfamily ABE28_011745 PF00924 Mechanosensitive ion channel ABE28_011780 PF01266 FAD dependent oxidoreductase ABE28_011805 PF01266 FAD dependent oxidoreductase ABE28_011810 PF00392 Bacterial regulatory proteins, gntR family ABE28_011820 PF00589 Phage integrase family ABE28_011830 PF01546 Peptidase family M20/M25/M40 ABE28_011830 PF07687 Peptidase dimerisation domain ABE28_011835 PF00710 Asparaginase, N-terminal ABE28_011835 PF17763 Glutaminase/Asparaginase C-terminal domain ABE28_011840 PF00474 Sodium:solute symporter family ABE28_011855 PF03851 UV-endonuclease UvdE ABE28_011865 PF00128 Alpha amylase, catalytic domain ABE28_011865 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABE28_011865 PF17999 Pullulanase N1-terminal domain ABE28_011870 PF07724 AAA domain (Cdc48 subfamily) ABE28_011870 PF17871 AAA lid domain ABE28_011870 PF10431 C-terminal, D2-small domain, of ClpB protein ABE28_011870 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_011885 PF01476 LysM domain ABE28_011885 PF00877 NlpC/P60 family ABE28_011905 PF03466 LysR substrate binding domain ABE28_011905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_011910 PF03601 Conserved hypothetical protein 698 ABE28_011915 PF02675 S-adenosylmethionine decarboxylase ABE28_011920 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_011925 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABE28_011930 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_011935 PF00571 CBS domain ABE28_011935 PF00005 ABC transporter ABE28_011945 PF07690 Major Facilitator Superfamily ABE28_011965 PF13460 NAD(P)H-binding ABE28_011970 PF00300 Histidine phosphatase superfamily (branch 1) ABE28_011980 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_011995 PF03372 Endonuclease/Exonuclease/phosphatase family ABE28_012000 PF13396 Phospholipase_D-nuclease N-terminal ABE28_012000 PF13091 PLD-like domain ABE28_012005 PF00534 Glycosyl transferases group 1 ABE28_012005 PF08323 Starch synthase catalytic domain ABE28_012010 PF00483 Nucleotidyl transferase ABE28_012015 PF00132 Bacterial transferase hexapeptide (six repeats) ABE28_012015 PF00483 Nucleotidyl transferase ABE28_012020 PF02806 Alpha amylase, C-terminal all-beta domain ABE28_012020 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ABE28_012020 PF00128 Alpha amylase, catalytic domain ABE28_012030 PF03167 Uracil DNA glycosylase superfamily ABE28_012050 PF01925 Sulfite exporter TauE/SafE ABE28_012055 PF14824 Sirohaem biosynthesis protein central ABE28_012060 PF01903 CbiX ABE28_012065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABE28_012075 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABE28_012075 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABE28_012085 PF01747 ATP-sulfurylase ABE28_012085 PF14306 PUA-like domain ABE28_012090 PF01507 Phosphoadenosine phosphosulfate reductase family ABE28_012100 PF03358 NADPH-dependent FMN reductase ABE28_012105 PF01174 SNO glutamine amidotransferase family ABE28_012110 PF01680 SOR/SNZ family ABE28_012115 PF00392 Bacterial regulatory proteins, gntR family ABE28_012115 PF00155 Aminotransferase class I and II ABE28_012120 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_012125 PF04715 Anthranilate synthase component I, N terminal region ABE28_012125 PF00425 chorismate binding enzyme ABE28_012130 PF00296 Luciferase-like monooxygenase ABE28_012135 PF00296 Luciferase-like monooxygenase ABE28_012145 PF01432 Peptidase family M3 ABE28_012145 PF08439 Oligopeptidase F ABE28_012150 PF02525 Flavodoxin-like fold ABE28_012155 PF08892 YqcI/YcgG family ABE28_012160 PF00269 Small, acid-soluble spore proteins, alpha/beta type ABE28_012165 PF00465 Iron-containing alcohol dehydrogenase ABE28_012170 PF00268 Ribonucleotide reductase, small chain ABE28_012175 PF00072 Response regulator receiver domain ABE28_012175 PF00196 Bacterial regulatory proteins, luxR family ABE28_012185 PF01063 Amino-transferase class IV ABE28_012190 PF01594 AI-2E family transporter ABE28_012200 PF03734 L,D-transpeptidase catalytic domain ABE28_012220 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_012225 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_012230 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABE28_012235 PF00005 ABC transporter ABE28_012245 PF03547 Membrane transport protein ABE28_012250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABE28_012260 PF10282 Lactonase, 7-bladed beta-propeller ABE28_012275 PF00202 Aminotransferase class-III ABE28_012280 PF00171 Aldehyde dehydrogenase family ABE28_012285 PF13302 Acetyltransferase (GNAT) domain ABE28_012290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABE28_012295 PF00313 'Cold-shock' DNA-binding domain ABE28_012300 PF00378 Enoyl-CoA hydratase/isomerase ABE28_012310 PF00005 ABC transporter ABE28_012310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_012315 PF00005 ABC transporter ABE28_012315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_012320 PF12911 N-terminal TM domain of oligopeptide transport permease C ABE28_012320 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_012325 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_012330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABE28_012390 PF05593 RHS Repeat ABE28_012405 PF00188 Cysteine-rich secretory protein family ABE28_012415 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABE28_012415 PF02811 PHP domain ABE28_012415 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABE28_012415 PF00929 Exonuclease ABE28_012415 PF14579 Helix-hairpin-helix motif ABE28_012435 PF01545 Cation efflux family ABE28_012435 PF16916 Dimerisation domain of Zinc Transporter ABE28_012445 PF00324 Amino acid permease ABE28_012450 PF00512 His Kinase A (phospho-acceptor) domain ABE28_012450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_012450 PF00989 PAS fold ABE28_012455 PF10127 RNA repair pathway DNA polymerase beta family ABE28_012460 PF03741 Integral membrane protein TerC family ABE28_012465 PF08125 Mannitol dehydrogenase C-terminal domain ABE28_012465 PF01232 Mannitol dehydrogenase Rossmann domain ABE28_012470 PF00107 Zinc-binding dehydrogenase ABE28_012470 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_012475 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ABE28_012475 PF08666 SAF domain ABE28_012480 PF12833 Helix-turn-helix domain ABE28_012480 PF06445 GyrI-like small molecule binding domain ABE28_012485 PF07690 Major Facilitator Superfamily ABE28_012490 PF00356 Bacterial regulatory proteins, lacI family ABE28_012495 PF00106 short chain dehydrogenase ABE28_012500 PF03786 D-mannonate dehydratase (UxuA) ABE28_012505 PF01081 KDPG and KHG aldolase ABE28_012510 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_012510 PF00107 Zinc-binding dehydrogenase ABE28_012515 PF02615 Malate/L-lactate dehydrogenase ABE28_012520 PF00294 pfkB family carbohydrate kinase ABE28_012530 PF01747 ATP-sulfurylase ABE28_012530 PF14306 PUA-like domain ABE28_012540 PF01925 Sulfite exporter TauE/SafE ABE28_012545 PF00535 Glycosyl transferase family 2 ABE28_012550 PF00534 Glycosyl transferases group 1 ABE28_012550 PF00862 Sucrose synthase ABE28_012560 PF00535 Glycosyl transferase family 2 ABE28_012565 PF16363 GDP-mannose 4,6 dehydratase ABE28_012580 PF00534 Glycosyl transferases group 1 ABE28_012580 PF13439 Glycosyltransferase Family 4 ABE28_012585 PF16363 GDP-mannose 4,6 dehydratase ABE28_012595 PF02719 Polysaccharide biosynthesis protein ABE28_012600 PF02350 UDP-N-acetylglucosamine 2-epimerase ABE28_012605 PF13460 NAD(P)H-binding ABE28_012610 PF00005 ABC transporter ABE28_012610 PF00664 ABC transporter transmembrane region ABE28_012620 PF01476 LysM domain ABE28_012620 PF00704 Glycosyl hydrolases family 18 ABE28_012625 PF00106 short chain dehydrogenase ABE28_012630 PF13091 PLD-like domain ABE28_012630 PF13396 Phospholipase_D-nuclease N-terminal ABE28_012635 PF02583 Metal-sensitive transcriptional repressor ABE28_012650 PF01613 Flavin reductase like domain ABE28_012655 PF01738 Dienelactone hydrolase family ABE28_012660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_012665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_012690 PF02566 OsmC-like protein ABE28_012695 PF03698 Uncharacterised protein family (UPF0180) ABE28_012715 PF02898 Nitric oxide synthase, oxygenase domain ABE28_012720 PF01638 HxlR-like helix-turn-helix ABE28_012740 PF07676 WD40-like Beta Propeller Repeat ABE28_012740 PF00326 Prolyl oligopeptidase family ABE28_012755 PF03717 Penicillin-binding Protein dimerisation domain ABE28_012755 PF05223 NTF2-like N-terminal transpeptidase domain ABE28_012755 PF00905 Penicillin binding protein transpeptidase domain ABE28_012760 PF03965 Penicillinase repressor ABE28_012765 PF00905 Penicillin binding protein transpeptidase domain ABE28_012765 PF05569 BlaR1 peptidase M56 ABE28_012770 PF00571 CBS domain ABE28_012775 PF00753 Metallo-beta-lactamase superfamily ABE28_012780 PF12679 ABC-2 family transporter protein ABE28_012785 PF00005 ABC transporter ABE28_012795 PF12832 MFS_1 like family ABE28_012800 PF00512 His Kinase A (phospho-acceptor) domain ABE28_012800 PF00989 PAS fold ABE28_012800 PF13188 PAS domain ABE28_012800 PF13426 PAS domain ABE28_012800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_012805 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_012805 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_012820 PF16124 RecQ zinc-binding ABE28_012820 PF00570 HRDC domain ABE28_012820 PF00270 DEAD/DEAH box helicase ABE28_012820 PF09382 RQC domain ABE28_012820 PF00271 Helicase conserved C-terminal domain ABE28_012825 PF01476 LysM domain ABE28_012825 PF06725 3D domain ABE28_012830 PF11007 Spore coat associated protein JA (CotJA) ABE28_012835 PF12652 CotJB protein ABE28_012840 PF05067 Manganese containing catalase ABE28_012845 PF13509 S1 domain ABE28_012845 PF17783 CvfB-like winged helix domain ABE28_012850 PF00512 His Kinase A (phospho-acceptor) domain ABE28_012850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_012850 PF00672 HAMP domain ABE28_012850 PF13426 PAS domain ABE28_012855 PF00072 Response regulator receiver domain ABE28_012855 PF00486 Transcriptional regulatory protein, C terminal ABE28_012860 PF00072 Response regulator receiver domain ABE28_012860 PF00990 Diguanylate cyclase, GGDEF domain ABE28_012885 PF13538 UvrD-like helicase C-terminal domain ABE28_012895 PF12848 ABC transporter ABE28_012895 PF00005 ABC transporter ABE28_012905 PF15975 Flotillin ABE28_012905 PF01145 SPFH domain / Band 7 family ABE28_012915 PF02632 BioY family ABE28_012925 PF03006 Haemolysin-III related ABE28_012930 PF01022 Bacterial regulatory protein, arsR family ABE28_012935 PF07486 Cell Wall Hydrolase ABE28_012945 PF01894 Uncharacterised protein family UPF0047 ABE28_012955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABE28_012955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_012960 PF00294 pfkB family carbohydrate kinase ABE28_012965 PF00455 DeoR C terminal sensor domain ABE28_012965 PF08220 DeoR-like helix-turn-helix domain ABE28_012970 PF02817 e3 binding domain ABE28_012970 PF00364 Biotin-requiring enzyme ABE28_012970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABE28_012975 PF16870 2-oxoglutarate dehydrogenase C-terminal ABE28_012975 PF02779 Transketolase, pyrimidine binding domain ABE28_012975 PF00676 Dehydrogenase E1 component ABE28_012980 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ABE28_012985 PF01522 Polysaccharide deacetylase ABE28_012985 PF03422 Carbohydrate binding module (family 6) ABE28_012985 PF00457 Glycosyl hydrolases family 11 ABE28_012990 PF02607 B12 binding domain ABE28_012990 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABE28_012990 PF00809 Pterin binding enzyme ABE28_012990 PF02574 Homocysteine S-methyltransferase ABE28_012990 PF02310 B12 binding domain ABE28_012995 PF02574 Homocysteine S-methyltransferase ABE28_012995 PF02219 Methylenetetrahydrofolate reductase ABE28_013000 PF03475 3-alpha domain ABE28_013000 PF03473 MOSC domain ABE28_013005 PF02735 Ku70/Ku80 beta-barrel domain ABE28_013010 PF01068 ATP dependent DNA ligase domain ABE28_013015 PF01678 Diaminopimelate epimerase ABE28_013020 PF00860 Permease family ABE28_013025 PF00484 Carbonic anhydrase ABE28_013045 PF02673 Bacitracin resistance protein BacA ABE28_013055 PF03788 LrgA family ABE28_013060 PF04172 LrgB-like family ABE28_013065 PF04101 Glycosyltransferase family 28 C-terminal domain ABE28_013065 PF03033 Glycosyltransferase family 28 N-terminal domain ABE28_013070 PF00924 Mechanosensitive ion channel ABE28_013075 PF01554 MatE ABE28_013090 PF00188 Cysteine-rich secretory protein family ABE28_013100 PF16736 Single Cache-like ABE28_013100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_013100 PF00512 His Kinase A (phospho-acceptor) domain ABE28_013100 PF00989 PAS fold ABE28_013105 PF00486 Transcriptional regulatory protein, C terminal ABE28_013105 PF00072 Response regulator receiver domain ABE28_013125 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABE28_013125 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABE28_013130 PF03079 ARD/ARD' family ABE28_013135 PF00596 Class II Aldolase and Adducin N-terminal domain ABE28_013145 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ABE28_013145 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ABE28_013150 PF00155 Aminotransferase class I and II ABE28_013155 PF00795 Carbon-nitrogen hydrolase ABE28_013160 PF01636 Phosphotransferase enzyme family ABE28_013165 PF01008 Initiation factor 2 subunit family ABE28_013175 PF01471 Putative peptidoglycan binding domain ABE28_013175 PF17820 PDZ domain ABE28_013175 PF03572 Peptidase family S41 ABE28_013185 PF01048 Phosphorylase superfamily ABE28_013190 PF14162 YozD-like protein ABE28_013230 PF13333 Integrase core domain ABE28_013230 PF00665 Integrase core domain ABE28_013230 PF13276 HTH-like domain ABE28_013240 PF13426 PAS domain ABE28_013240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_013240 PF00512 His Kinase A (phospho-acceptor) domain ABE28_013240 PF00989 PAS fold ABE28_013240 PF13188 PAS domain ABE28_013245 PF06855 YozE SAM-like fold ABE28_013250 PF14122 YokU-like protein, putative antitoxin ABE28_013255 PF12544 Lysine-2,3-aminomutase ABE28_013260 PF13426 PAS domain ABE28_013260 PF02954 Bacterial regulatory protein, Fis family ABE28_013260 PF00158 Sigma-54 interaction domain ABE28_013265 PF00583 Acetyltransferase (GNAT) family ABE28_013270 PF07687 Peptidase dimerisation domain ABE28_013270 PF01546 Peptidase family M20/M25/M40 ABE28_013275 PF01144 Coenzyme A transferase ABE28_013280 PF01144 Coenzyme A transferase ABE28_013285 PF00202 Aminotransferase class-III ABE28_013295 PF17676 LD-carboxypeptidase C-terminal domain ABE28_013295 PF02016 LD-carboxypeptidase N-terminal domain ABE28_013310 PF01641 SelR domain ABE28_013315 PF01625 Peptide methionine sulfoxide reductase ABE28_013325 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) ABE28_013335 PF02630 SCO1/SenC ABE28_013340 PF02645 Uncharacterised protein, DegV family COG1307 ABE28_013350 PF00902 Sec-independent protein translocase protein (TatC) ABE28_013355 PF02416 mttA/Hcf106 family ABE28_013360 PF00585 C-terminal regulatory domain of Threonine dehydratase ABE28_013360 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_013365 PF00186 Dihydrofolate reductase ABE28_013370 PF00303 Thymidylate synthase ABE28_013385 PF01872 RibD C-terminal domain ABE28_013390 PF03741 Integral membrane protein TerC family ABE28_013395 PF14005 YpjP-like protein ABE28_013405 PF04445 Putative SAM-dependent methyltransferase ABE28_013410 PF06491 Disulphide isomerase ABE28_013425 PF00920 Dehydratase family ABE28_013430 PF08712 Scaffold protein Nfu/NifU N terminal ABE28_013430 PF13769 Virulence factor ABE28_013435 PF16326 ABC transporter C-terminal domain ABE28_013435 PF12848 ABC transporter ABE28_013435 PF00005 ABC transporter ABE28_013440 PF01966 HD domain ABE28_013445 PF02645 Uncharacterised protein, DegV family COG1307 ABE28_013450 PF00255 Glutathione peroxidase ABE28_013460 PF04204 Homoserine O-succinyltransferase ABE28_013470 PF01209 ubiE/COQ5 methyltransferase family ABE28_013480 PF02742 Iron dependent repressor, metal binding and dimerisation domain ABE28_013480 PF01325 Iron dependent repressor, N-terminal DNA binding domain ABE28_013495 PF02378 Phosphotransferase system, EIIC ABE28_013495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_013500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABE28_013505 PF01232 Mannitol dehydrogenase Rossmann domain ABE28_013505 PF08125 Mannitol dehydrogenase C-terminal domain ABE28_013510 PF01380 SIS domain ABE28_013515 PF00834 Ribulose-phosphate 3 epimerase family ABE28_013520 PF08220 DeoR-like helix-turn-helix domain ABE28_013520 PF00455 DeoR C terminal sensor domain ABE28_013530 PF05163 DinB family ABE28_013550 PF00269 Small, acid-soluble spore proteins, alpha/beta type ABE28_013555 PF00171 Aldehyde dehydrogenase family ABE28_013565 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_013570 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_013580 PF00356 Bacterial regulatory proteins, lacI family ABE28_013585 PF01791 DeoC/LacD family aldolase ABE28_013590 PF00294 pfkB family carbohydrate kinase ABE28_013595 PF01380 SIS domain ABE28_013600 PF00480 ROK family ABE28_013605 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_013615 PF01547 Bacterial extracellular solute-binding protein ABE28_013625 PF00356 Bacterial regulatory proteins, lacI family ABE28_013640 PF00480 ROK family ABE28_013650 PF00881 Nitroreductase family ABE28_013660 PF01418 Helix-turn-helix domain, rpiR family ABE28_013660 PF01380 SIS domain ABE28_013665 PF01869 BadF/BadG/BcrA/BcrD ATPase family ABE28_013675 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ABE28_013680 PF02056 Family 4 glycosyl hydrolase ABE28_013680 PF11975 Family 4 glycosyl hydrolase C-terminal domain ABE28_013690 PF02378 Phosphotransferase system, EIIC ABE28_013700 PF13580 SIS domain ABE28_013705 PF02638 Glycosyl hydrolase-like 10 ABE28_013710 PF03702 Anhydro-N-acetylmuramic acid kinase ABE28_013715 PF00324 Amino acid permease ABE28_013720 PF07687 Peptidase dimerisation domain ABE28_013720 PF01546 Peptidase family M20/M25/M40 ABE28_013725 PF03606 C4-dicarboxylate anaerobic carrier ABE28_013730 PF01546 Peptidase family M20/M25/M40 ABE28_013745 PF01614 Bacterial transcriptional regulator ABE28_013745 PF09339 IclR helix-turn-helix domain ABE28_013755 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABE28_013755 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABE28_013760 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ABE28_013765 PF03613 PTS system mannose/fructose/sorbose family IID component ABE28_013770 PF03830 PTS system sorbose subfamily IIB component ABE28_013780 PF01380 SIS domain ABE28_013780 PF01418 Helix-turn-helix domain, rpiR family ABE28_013785 PF00324 Amino acid permease ABE28_013790 PF00491 Arginase family ABE28_013795 PF12796 Ankyrin repeats (3 copies) ABE28_013800 PF00486 Transcriptional regulatory protein, C terminal ABE28_013800 PF00072 Response regulator receiver domain ABE28_013805 PF13426 PAS domain ABE28_013805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_013805 PF00672 HAMP domain ABE28_013805 PF00512 His Kinase A (phospho-acceptor) domain ABE28_013810 PF01593 Flavin containing amine oxidoreductase ABE28_013820 PF01593 Flavin containing amine oxidoreductase ABE28_013850 PF00171 Aldehyde dehydrogenase family ABE28_013855 PF01472 PUA domain ABE28_013855 PF00696 Amino acid kinase family ABE28_013865 PF00175 Oxidoreductase NAD-binding domain ABE28_013865 PF00042 Globin ABE28_013865 PF00970 Oxidoreductase FAD-binding domain ABE28_013870 PF02082 Transcriptional regulator ABE28_013875 PF01966 HD domain ABE28_013880 PF10782 Zinc-finger ABE28_013885 PF13456 Reverse transcriptase-like ABE28_013890 PF13456 Reverse transcriptase-like ABE28_013905 PF01367 5'-3' exonuclease, C-terminal SAM fold ABE28_013905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABE28_013910 PF00581 Rhodanese-like domain ABE28_013920 PF00350 Dynamin family ABE28_013925 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ABE28_013930 PF02797 Chalcone and stilbene synthases, C-terminal domain ABE28_013930 PF00195 Chalcone and stilbene synthases, N-terminal domain ABE28_013940 PF00860 Permease family ABE28_013945 PF00156 Phosphoribosyl transferase domain ABE28_013950 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ABE28_013955 PF13307 Helicase C-terminal domain ABE28_013965 PF00313 'Cold-shock' DNA-binding domain ABE28_013970 PF02926 THUMP domain ABE28_013970 PF01170 Putative RNA methylase family UPF0020 ABE28_013985 PF05103 DivIVA protein ABE28_013990 PF06908 YspA SLOG family ABE28_013995 PF11122 Inner spore coat protein D ABE28_014000 PF13482 RNase_H superfamily ABE28_014005 PF00270 DEAD/DEAH box helicase ABE28_014005 PF00271 Helicase conserved C-terminal domain ABE28_014005 PF09369 Domain of unknown function (DUF1998) ABE28_014010 PF00561 alpha/beta hydrolase fold ABE28_014015 PF00011 Hsp20/alpha crystallin family ABE28_014035 PF10720 Protein of unknown function (DUF2515) ABE28_014040 PF03838 Recombination protein U ABE28_014045 PF00905 Penicillin binding protein transpeptidase domain ABE28_014045 PF00912 Transglycosylase ABE28_014055 PF00633 Helix-hairpin-helix motif ABE28_014055 PF00730 HhH-GPD superfamily base excision DNA repair protein ABE28_014055 PF10576 Iron-sulfur binding domain of endonuclease III ABE28_014060 PF07261 Replication initiation and membrane attachment ABE28_014065 PF00152 tRNA synthetases class II (D, K and N) ABE28_014065 PF01336 OB-fold nucleic acid binding domain ABE28_014070 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABE28_014075 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABE28_014085 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal ABE28_014085 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal ABE28_014090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_014095 PF00171 Aldehyde dehydrogenase family ABE28_014100 PF00701 Dihydrodipicolinate synthetase family ABE28_014110 PF00155 Aminotransferase class I and II ABE28_014115 PF17881 Domain of unknown function (DUF5590) ABE28_014115 PF03413 Peptidase propeptide and YPEB domain ABE28_014120 PF14084 Protein of unknown function (DUF4264) ABE28_014125 PF00929 Exonuclease ABE28_014125 PF04851 Type III restriction enzyme, res subunit ABE28_014125 PF13307 Helicase C-terminal domain ABE28_014130 PF02261 Aspartate decarboxylase ABE28_014135 PF02569 Pantoate-beta-alanine ligase ABE28_014140 PF02548 Ketopantoate hydroxymethyltransferase ABE28_014145 PF03099 Biotin/lipoate A/B protein ligase family ABE28_014145 PF08279 HTH domain ABE28_014145 PF02237 Biotin protein ligase C terminal domain ABE28_014150 PF01743 Poly A polymerase head domain ABE28_014150 PF13735 tRNA nucleotidyltransferase domain 2 putative ABE28_014150 PF12627 Probable RNA and SrmB- binding site of polymerase A ABE28_014155 PF13439 Glycosyltransferase Family 4 ABE28_014155 PF00534 Glycosyl transferases group 1 ABE28_014160 PF02585 GlcNAc-PI de-N-acetylase ABE28_014165 PF02142 MGS-like domain ABE28_014170 PF01113 Dihydrodipicolinate reductase, N-terminus ABE28_014170 PF05173 Dihydrodipicolinate reductase, C-terminus ABE28_014175 PF03819 MazG nucleotide pyrophosphohydrolase domain ABE28_014180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_014180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_014185 PF04298 Putative neutral zinc metallopeptidase ABE28_014190 PF09577 Sporulation protein YpjB (SpoYpjB) ABE28_014195 PF07187 Protein of unknown function (DUF1405) ABE28_014200 PF00032 Cytochrome b(C-terminal)/b6/petD ABE28_014200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABE28_014205 PF00033 Cytochrome b/b6/petB ABE28_014210 PF00355 Rieske [2Fe-2S] domain ABE28_014215 PF10673 Protein of unknown function (DUF2487) ABE28_014220 PF08864 UPF0302 domain ABE28_014220 PF08858 IDEAL domain ABE28_014230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABE28_014235 PF02153 Prephenate dehydrogenase ABE28_014235 PF01842 ACT domain ABE28_014240 PF00155 Aminotransferase class I and II ABE28_014245 PF07736 Chorismate mutase type I ABE28_014250 PF01761 3-dehydroquinate synthase ABE28_014255 PF01264 Chorismate synthase ABE28_014260 PF01739 CheR methyltransferase, SAM binding domain ABE28_014260 PF03705 CheR methyltransferase, all-alpha domain ABE28_014265 PF00334 Nucleoside diphosphate kinase ABE28_014270 PF00348 Polyprenyl synthetase ABE28_014275 PF01209 ubiE/COQ5 methyltransferase family ABE28_014280 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 ABE28_014285 PF02081 Tryptophan RNA-binding attenuator protein ABE28_014290 PF01227 GTP cyclohydrolase I ABE28_014295 PF00216 Bacterial DNA-binding protein ABE28_014300 PF09547 Stage IV sporulation protein A (spore_IV_A) ABE28_014310 PF10966 Protein of unknown function (DUF2768) ABE28_014315 PF00202 Aminotransferase class-III ABE28_014320 PF00158 Sigma-54 interaction domain ABE28_014320 PF02954 Bacterial regulatory protein, Fis family ABE28_014320 PF00989 PAS fold ABE28_014325 PF00324 Amino acid permease ABE28_014330 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABE28_014330 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABE28_014335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABE28_014335 PF01926 50S ribosome-binding GTPase ABE28_014345 PF14140 YpzI-like protein ABE28_014350 PF01070 FMN-dependent dehydrogenase ABE28_014355 PF00575 S1 RNA binding domain ABE28_014360 PF01553 Acyltransferase ABE28_014365 PF02224 Cytidylate kinase ABE28_014370 PF17313 Family of unknown function (DUF5359) ABE28_014380 PF14620 YpeB sporulation ABE28_014380 PF03413 Peptidase propeptide and YPEB domain ABE28_014385 PF01471 Putative peptidoglycan binding domain ABE28_014385 PF07486 Cell Wall Hydrolase ABE28_014390 PF13367 PrsW family intramembrane metalloprotease ABE28_014395 PF00710 Asparaginase, N-terminal ABE28_014395 PF17763 Glutaminase/Asparaginase C-terminal domain ABE28_014405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABE28_014405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABE28_014410 PF05389 Negative regulator of genetic competence (MecA) ABE28_014415 PF02310 B12 binding domain ABE28_014415 PF02607 B12 binding domain ABE28_014415 PF13411 MerR HTH family regulatory protein ABE28_014420 PF00149 Calcineurin-like phosphoesterase ABE28_014425 PF10864 Protein of unknown function (DUF2663) ABE28_014430 PF01476 LysM domain ABE28_014435 PF02517 CPBP intramembrane metalloprotease ABE28_014440 PF00270 DEAD/DEAH box helicase ABE28_014440 PF00271 Helicase conserved C-terminal domain ABE28_014445 PF14493 Helix-turn-helix domain ABE28_014455 PF12822 ECF transporter, substrate-specific component ABE28_014460 PF01842 ACT domain ABE28_014460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABE28_014460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABE28_014470 PF04542 Sigma-70 region 2 ABE28_014470 PF08281 Sigma-70, region 4 ABE28_014475 PF18698 Histidine kinase sensor domain ABE28_014475 PF00672 HAMP domain ABE28_014475 PF00512 His Kinase A (phospho-acceptor) domain ABE28_014475 PF00989 PAS fold ABE28_014475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_014480 PF00486 Transcriptional regulatory protein, C terminal ABE28_014480 PF00072 Response regulator receiver domain ABE28_014485 PF01578 Cytochrome C assembly protein ABE28_014490 PF05140 ResB-like family ABE28_014495 PF00578 AhpC/TSA family ABE28_014500 PF01479 S4 domain ABE28_014500 PF00849 RNA pseudouridylate synthase ABE28_014505 PF07670 Nucleoside recognition ABE28_014510 PF07670 Nucleoside recognition ABE28_014515 PF00768 D-alanyl-D-alanine carboxypeptidase ABE28_014515 PF07943 Penicillin-binding protein 5, C-terminal domain ABE28_014520 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_014525 PF00578 AhpC/TSA family ABE28_014530 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABE28_014530 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABE28_014535 PF13047 Protein of unknown function (DUF3907) ABE28_014545 PF04079 Segregation and condensation complex subunit ScpB ABE28_014550 PF02616 Segregation and condensation protein ScpA ABE28_014555 PF03745 Domain of unknown function (DUF309) ABE28_014560 PF00583 Acetyltransferase (GNAT) family ABE28_014565 PF06207 Protein of unknown function (DUF1002) ABE28_014570 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABE28_014570 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABE28_014575 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_014580 PF14097 Stage V sporulation protein AE1 ABE28_014585 PF13782 Stage V sporulation protein AB ABE28_014590 PF12164 Stage V sporulation protein AA ABE28_014595 PF00860 Permease family ABE28_014600 PF04542 Sigma-70 region 2 ABE28_014600 PF04545 Sigma-70, region 4 ABE28_014600 PF04539 Sigma-70 region 3 ABE28_014605 PF13581 Histidine kinase-like ATPase domain ABE28_014610 PF01740 STAS domain ABE28_014615 PF00768 D-alanyl-D-alanine carboxypeptidase ABE28_014615 PF07943 Penicillin-binding protein 5, C-terminal domain ABE28_014620 PF02885 Glycosyl transferase family, helical bundle domain ABE28_014620 PF00591 Glycosyl transferase family, a/b domain ABE28_014620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ABE28_014625 PF01048 Phosphorylase superfamily ABE28_014630 PF01676 Metalloenzyme superfamily ABE28_014635 PF00589 Phage integrase family ABE28_014635 PF02899 Phage integrase, N-terminal SAM-like domain ABE28_014640 PF14004 Protein of unknown function (DUF4227) ABE28_014645 PF01475 Ferric uptake regulator family ABE28_014650 PF01944 Stage II sporulation protein M ABE28_014665 PF00293 NUDIX domain ABE28_014670 PF00248 Aldo/keto reductase family ABE28_014675 PF02566 OsmC-like protein ABE28_014680 PF01047 MarR family ABE28_014690 PF12146 Serine aminopeptidase, S33 ABE28_014695 PF01521 Iron-sulphur cluster biosynthesis ABE28_014700 PF08863 YolD-like protein ABE28_014705 PF11799 impB/mucB/samB family C-terminal domain ABE28_014705 PF11798 IMS family HHH motif ABE28_014705 PF00817 impB/mucB/samB family ABE28_014710 PF00877 NlpC/P60 family ABE28_014710 PF01476 LysM domain ABE28_014725 PF00106 short chain dehydrogenase ABE28_014730 PF00753 Metallo-beta-lactamase superfamily ABE28_014735 PF03807 NADP oxidoreductase coenzyme F420-dependent ABE28_014735 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABE28_014745 PF13411 MerR HTH family regulatory protein ABE28_014750 PF00005 ABC transporter ABE28_014775 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ABE28_014775 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ABE28_014785 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ABE28_014785 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABE28_014790 PF11798 IMS family HHH motif ABE28_014790 PF00817 impB/mucB/samB family ABE28_014790 PF11799 impB/mucB/samB family C-terminal domain ABE28_014795 PF01546 Peptidase family M20/M25/M40 ABE28_014795 PF07687 Peptidase dimerisation domain ABE28_014800 PF01039 Carboxyl transferase domain ABE28_014810 PF03734 L,D-transpeptidase catalytic domain ABE28_014815 PF11728 Putative aromatic acid exporter C-terminal domain ABE28_014815 PF06081 Aromatic acid exporter family member 1 ABE28_014820 PF00005 ABC transporter ABE28_014825 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_014830 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABE28_014835 PF06491 Disulphide isomerase ABE28_014845 PF02310 B12 binding domain ABE28_014845 PF01642 Methylmalonyl-CoA mutase ABE28_014850 PF01642 Methylmalonyl-CoA mutase ABE28_014855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABE28_014855 PF00364 Biotin-requiring enzyme ABE28_014855 PF02817 e3 binding domain ABE28_014860 PF02780 Transketolase, C-terminal domain ABE28_014860 PF02779 Transketolase, pyrimidine binding domain ABE28_014865 PF00676 Dehydrogenase E1 component ABE28_014870 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_014870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABE28_014875 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABE28_014875 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABE28_014880 PF02954 Bacterial regulatory protein, Fis family ABE28_014880 PF00989 PAS fold ABE28_014880 PF00158 Sigma-54 interaction domain ABE28_014885 PF11118 Protein of unknown function (DUF2627) ABE28_014890 PF03009 Glycerophosphoryl diester phosphodiesterase family ABE28_014900 PF08769 Sporulation initiation factor Spo0A C terminal ABE28_014900 PF00072 Response regulator receiver domain ABE28_014905 PF05580 SpoIVB peptidase S55 ABE28_014905 PF17820 PDZ domain ABE28_014910 PF13476 AAA domain ABE28_014915 PF01316 Arginine repressor, DNA binding domain ABE28_014915 PF02863 Arginine repressor, C-terminal domain ABE28_014920 PF01728 FtsJ-like methyltransferase ABE28_014920 PF01479 S4 domain ABE28_014925 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABE28_014925 PF02779 Transketolase, pyrimidine binding domain ABE28_014925 PF02780 Transketolase, C-terminal domain ABE28_014930 PF00348 Polyprenyl synthetase ABE28_014935 PF02609 Exonuclease VII small subunit ABE28_014940 PF13742 OB-fold nucleic acid binding domain ABE28_014940 PF02601 Exonuclease VII, large subunit ABE28_014945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABE28_014945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABE28_014950 PF01029 NusB family ABE28_014955 PF03780 Asp23 family, cell envelope-related function ABE28_014960 PF00289 Biotin carboxylase, N-terminal domain ABE28_014960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABE28_014960 PF02785 Biotin carboxylase C-terminal domain ABE28_014965 PF00364 Biotin-requiring enzyme ABE28_014970 PF12685 SpoIIIAH-like protein ABE28_014980 PF09581 Stage III sporulation protein AF (Spore_III_AF) ABE28_014985 PF09546 Stage III sporulation protein AE (spore_III_AE) ABE28_014990 PF06686 Stage III sporulation protein AC/AD protein family ABE28_014995 PF06686 Stage III sporulation protein AC/AD protein family ABE28_015000 PF09548 Stage III sporulation protein AB (spore_III_AB) ABE28_015010 PF08207 Elongation factor P (EF-P) KOW-like domain ABE28_015010 PF09285 Elongation factor P, C-terminal ABE28_015010 PF01132 Elongation factor P (EF-P) OB domain ABE28_015015 PF00557 Metallopeptidase family M24 ABE28_015015 PF01321 Creatinase/Prolidase N-terminal domain ABE28_015020 PF01220 Dehydroquinase class II ABE28_015025 PF11085 Conserved membrane protein YqhR ABE28_015030 PF07136 Protein of unknown function (DUF1385) ABE28_015040 PF01734 Patatin-like phospholipase ABE28_015055 PF00317 Ribonucleotide reductase, all-alpha domain ABE28_015055 PF03477 ATP cone domain ABE28_015055 PF02867 Ribonucleotide reductase, barrel domain ABE28_015060 PF03099 Biotin/lipoate A/B protein ligase family ABE28_015065 PF00581 Rhodanese-like domain ABE28_015070 PF02347 Glycine cleavage system P-protein ABE28_015075 PF02347 Glycine cleavage system P-protein ABE28_015080 PF01571 Aminomethyltransferase folate-binding domain ABE28_015080 PF08669 Glycine cleavage T-protein C-terminal barrel domain ABE28_015085 PF00176 SNF2 family N-terminal domain ABE28_015085 PF00271 Helicase conserved C-terminal domain ABE28_015090 PF11079 Bacterial protein YqhG of unknown function ABE28_015120 PF07963 Prokaryotic N-terminal methylation motif ABE28_015125 PF00482 Type II secretion system (T2SS), protein F ABE28_015130 PF00437 Type II/IV secretion system protein ABE28_015135 PF03960 ArsC family ABE28_015145 PF11117 Protein of unknown function (DUF2626) ABE28_015155 PF00753 Metallo-beta-lactamase superfamily ABE28_015160 PF10958 Protein of unknown function (DUF2759) ABE28_015170 PF05922 Peptidase inhibitor I9 ABE28_015170 PF00082 Subtilase family ABE28_015180 PF01476 LysM domain ABE28_015180 PF00246 Zinc carboxypeptidase ABE28_015185 PF00480 ROK family ABE28_015200 PF01694 Rhomboid family ABE28_015210 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABE28_015230 PF01895 PhoU domain ABE28_015235 PF00005 ABC transporter ABE28_015240 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_015245 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_015250 PF12849 PBP superfamily domain ABE28_015260 PF07690 Major Facilitator Superfamily ABE28_015265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABE28_015265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABE28_015270 PF04306 Protein of unknown function (DUF456) ABE28_015275 PF06691 Protein of unknown function (DUF1189) ABE28_015285 PF04551 GcpE protein ABE28_015300 PF01475 Ferric uptake regulator family ABE28_015305 PF00950 ABC 3 transport family ABE28_015310 PF00005 ABC transporter ABE28_015320 PF01261 Xylose isomerase-like TIM barrel ABE28_015325 PF00270 DEAD/DEAH box helicase ABE28_015325 PF00271 Helicase conserved C-terminal domain ABE28_015340 PF02401 LytB protein ABE28_015345 PF01784 NIF3 (NGG1p interacting factor 3) ABE28_015350 PF04816 tRNA (adenine(22)-N(1))-methyltransferase ABE28_015355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ABE28_015365 PF04545 Sigma-70, region 4 ABE28_015365 PF04539 Sigma-70 region 3 ABE28_015365 PF03979 Sigma-70 factor, region 1.1 ABE28_015365 PF00140 Sigma-70 factor, region 1.2 ABE28_015365 PF04542 Sigma-70 region 2 ABE28_015370 PF10410 DnaB-helicase binding domain of primase ABE28_015370 PF08275 DNA primase catalytic core, N-terminal domain ABE28_015370 PF01807 CHC2 zinc finger ABE28_015375 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ABE28_015380 PF03618 Kinase/pyrophosphorylase ABE28_015385 PF08279 HTH domain ABE28_015385 PF00571 CBS domain ABE28_015390 PF02092 Glycyl-tRNA synthetase beta subunit ABE28_015395 PF02091 Glycyl-tRNA synthetase alpha subunit ABE28_015400 PF02565 Recombination protein O C terminal ABE28_015400 PF11967 Recombination protein O N terminal ABE28_015405 PF14006 YqzL-like protein ABE28_015410 PF07650 KH domain ABE28_015410 PF01926 50S ribosome-binding GTPase ABE28_015415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABE28_015420 PF01219 Prokaryotic diacylglycerol kinase ABE28_015425 PF02130 Uncharacterized protein family UPF0054 ABE28_015430 PF07698 7TM receptor with intracellular HD hydrolase ABE28_015430 PF07697 7TM-HD extracellular ABE28_015430 PF01966 HD domain ABE28_015435 PF02562 PhoH-like protein ABE28_015440 PF06898 Putative stage IV sporulation protein YqfD ABE28_015445 PF07873 YabP family ABE28_015455 PF12127 SigmaW regulon antibacterial ABE28_015460 PF01972 Serine dehydrogenase proteinase ABE28_015460 PF01957 NfeD-like C-terminal, partner-binding ABE28_015465 PF09424 Yqey-like protein ABE28_015470 PF01165 Ribosomal protein S21 ABE28_015475 PF02690 Na+/Pi-cotransporter ABE28_015485 PF01791 DeoC/LacD family aldolase ABE28_015490 PF04055 Radical SAM superfamily ABE28_015490 PF01938 TRAM domain ABE28_015490 PF00919 Uncharacterized protein family UPF0004 ABE28_015495 PF04452 RNA methyltransferase ABE28_015505 PF00226 DnaJ domain ABE28_015505 PF00684 DnaJ central domain ABE28_015505 PF01556 DnaJ C terminal domain ABE28_015510 PF00012 Hsp70 protein ABE28_015515 PF01025 GrpE ABE28_015525 PF06969 HemN C-terminal domain ABE28_015525 PF04055 Radical SAM superfamily ABE28_015530 PF00679 Elongation factor G C-terminus ABE28_015530 PF00009 Elongation factor Tu GTP binding domain ABE28_015530 PF03144 Elongation factor Tu domain 2 ABE28_015530 PF06421 GTP-binding protein LepA C-terminus ABE28_015540 PF07454 Stage II sporulation protein P (SpoIIP) ABE28_015545 PF03418 Germination protease ABE28_015550 PF01649 Ribosomal protein S20 ABE28_015555 PF06144 DNA polymerase III, delta subunit ABE28_015565 PF03772 Competence protein ABE28_015565 PF13567 Domain of unknown function (DUF4131) ABE28_015565 PF00753 Metallo-beta-lactamase superfamily ABE28_015570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABE28_015575 PF10531 SLBB domain ABE28_015580 PF03807 NADP oxidoreductase coenzyme F420-dependent ABE28_015580 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABE28_015585 PF13649 Methyltransferase domain ABE28_015595 PF01966 HD domain ABE28_015600 PF01467 Cytidylyltransferase-like ABE28_015605 PF01985 CRS1 / YhbY (CRM) domain ABE28_015610 PF01488 Shikimate / quinate 5-dehydrogenase ABE28_015610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABE28_015610 PF08501 Shikimate dehydrogenase substrate binding domain ABE28_015615 PF01926 50S ribosome-binding GTPase ABE28_015625 PF08970 Sporulation inhibitor A ABE28_015630 PF02666 Phosphatidylserine decarboxylase ABE28_015635 PF01066 CDP-alcohol phosphatidyltransferase ABE28_015650 PF04545 Sigma-70, region 4 ABE28_015650 PF04542 Sigma-70 region 2 ABE28_015665 PF01053 Cys/Met metabolism PLP-dependent enzyme ABE28_015670 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_015675 PF01048 Phosphorylase superfamily ABE28_015680 PF08241 Methyltransferase domain ABE28_015685 PF10750 Protein of unknown function (DUF2536) ABE28_015690 PF07423 Domain of unknown function (DUF1510) ABE28_015695 PF03717 Penicillin-binding Protein dimerisation domain ABE28_015695 PF00905 Penicillin binding protein transpeptidase domain ABE28_015700 PF01272 Transcription elongation factor, GreA/GreB, C-term ABE28_015700 PF03449 Transcription elongation factor, N-terminal ABE28_015705 PF00485 Phosphoribulokinase / Uridine kinase family ABE28_015725 PF02618 YceG-like family ABE28_015730 PF06949 Protein of unknown function (DUF1292) ABE28_015735 PF03652 Holliday junction resolvase ABE28_015740 PF06135 IreB regulatory phosphoprotein ABE28_015745 PF02272 DHHA1 domain ABE28_015745 PF01411 tRNA synthetases class II (A) ABE28_015745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABE28_015750 PF01594 AI-2E family transporter ABE28_015760 PF05239 PRC-barrel domain ABE28_015770 PF04011 LemA family ABE28_015775 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ABE28_015775 PF13538 UvrD-like helicase C-terminal domain ABE28_015775 PF14490 Helix-hairpin-helix containing domain ABE28_015790 PF00266 Aminotransferase class-V ABE28_015795 PF02082 Transcriptional regulator ABE28_015810 PF12002 MgsA AAA+ ATPase C terminal ABE28_015810 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABE28_015810 PF16193 AAA C-terminal domain ABE28_015825 PF00005 ABC transporter ABE28_015830 PF00392 Bacterial regulatory proteins, gntR family ABE28_015840 PF03816 Cell envelope-related transcriptional attenuator domain ABE28_015855 PF02350 UDP-N-acetylglucosamine 2-epimerase ABE28_015875 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABE28_015875 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABE28_015875 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABE28_015880 PF00483 Nucleotidyl transferase ABE28_015900 PF13614 AAA domain ABE28_015905 PF02397 Bacterial sugar transferase ABE28_015910 PF16363 GDP-mannose 4,6 dehydratase ABE28_015925 PF00535 Glycosyl transferase family 2 ABE28_015930 PF00534 Glycosyl transferases group 1 ABE28_015930 PF13477 Glycosyl transferase 4-like ABE28_015970 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) ABE28_015970 PF08548 Peptidase M10 serralysin C terminal ABE28_015970 PF12708 Pectate lyase superfamily protein ABE28_016000 PF02350 UDP-N-acetylglucosamine 2-epimerase ABE28_016005 PF01370 NAD dependent epimerase/dehydratase family ABE28_016010 PF02719 Polysaccharide biosynthesis protein ABE28_016010 PF08485 Polysaccharide biosynthesis protein C-terminal ABE28_016020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABE28_016030 PF02397 Bacterial sugar transferase ABE28_016035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABE28_016035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABE28_016035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABE28_016040 PF02719 Polysaccharide biosynthesis protein ABE28_016050 PF13614 AAA domain ABE28_016055 PF02706 Chain length determinant protein ABE28_016055 PF13807 G-rich domain on putative tyrosine kinase ABE28_016060 PF08671 Anti-repressor SinI ABE28_016060 PF01381 Helix-turn-helix ABE28_016080 PF00082 Subtilase family ABE28_016085 PF00872 Transposase, Mutator family ABE28_016090 PF00005 ABC transporter ABE28_016095 PF00005 ABC transporter ABE28_016095 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABE28_016100 PF02653 Branched-chain amino acid transport system / permease component ABE28_016100 PF11862 Domain of unknown function (DUF3382) ABE28_016105 PF02653 Branched-chain amino acid transport system / permease component ABE28_016110 PF13458 Periplasmic binding protein ABE28_016115 PF13458 Periplasmic binding protein ABE28_016120 PF00899 ThiF family ABE28_016125 PF01546 Peptidase family M20/M25/M40 ABE28_016125 PF07687 Peptidase dimerisation domain ABE28_016140 PF01336 OB-fold nucleic acid binding domain ABE28_016140 PF00152 tRNA synthetases class II (D, K and N) ABE28_016140 PF02938 GAD domain ABE28_016145 PF13393 Histidyl-tRNA synthetase ABE28_016145 PF03129 Anticodon binding domain ABE28_016150 PF08239 Bacterial SH3 domain ABE28_016150 PF01520 N-acetylmuramoyl-L-alanine amidase ABE28_016155 PF02580 D-Tyr-tRNA(Tyr) deacylase ABE28_016160 PF04607 Region found in RelA / SpoT proteins ABE28_016160 PF13291 ACT domain ABE28_016160 PF02824 TGS domain ABE28_016165 PF00156 Phosphoribosyl transferase domain ABE28_016170 PF01368 DHH family ABE28_016170 PF17768 RecJ OB domain ABE28_016170 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ABE28_016170 PF02272 DHHA1 domain ABE28_016175 PF07549 SecD/SecF GG Motif ABE28_016175 PF02355 Protein export membrane protein ABE28_016185 PF14667 Polysaccharide biosynthesis C-terminal domain ABE28_016185 PF01943 Polysaccharide biosynthesis protein ABE28_016190 PF04239 Protein of unknown function (DUF421) ABE28_016195 PF12670 Protein of unknown function (DUF3792) ABE28_016200 PF02699 Preprotein translocase subunit ABE28_016205 PF01702 Queuine tRNA-ribosyltransferase ABE28_016210 PF02547 Queuosine biosynthesis protein ABE28_016215 PF11146 Protein of unknown function (DUF2905) ABE28_016220 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABE28_016220 PF05491 RuvB C-terminal winged helix domain ABE28_016220 PF17864 RuvB AAA lid domain ABE28_016240 PF08955 BofC C-terminal domain ABE28_016240 PF08977 Bypass of Forespore C, N terminal ABE28_016255 PF01476 LysM domain ABE28_016265 PF04228 Putative neutral zinc metallopeptidase ABE28_016270 PF02445 Quinolinate synthetase A protein ABE28_016275 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABE28_016275 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABE28_016280 PF00890 FAD binding domain ABE28_016280 PF02910 Fumarate reductase flavoprotein C-term ABE28_016285 PF00266 Aminotransferase class-V ABE28_016290 PF08279 HTH domain ABE28_016290 PF02829 3H domain ABE28_016305 PF13276 HTH-like domain ABE28_016305 PF00665 Integrase core domain ABE28_016305 PF13333 Integrase core domain ABE28_016310 PF01842 ACT domain ABE28_016310 PF00800 Prephenate dehydratase ABE28_016315 PF01842 ACT domain ABE28_016320 PF01926 50S ribosome-binding GTPase ABE28_016320 PF09269 Domain of unknown function (DUF1967) ABE28_016320 PF01018 GTP1/OBG ABE28_016325 PF14682 Sporulation initiation phospho-transferase B, C-terminal ABE28_016325 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ABE28_016330 PF01016 Ribosomal L27 protein ABE28_016335 PF04327 Cysteine protease Prp ABE28_016340 PF00829 Ribosomal prokaryotic L21 protein ABE28_016345 PF00575 S1 RNA binding domain ABE28_016345 PF10150 Ribonuclease E/G family ABE28_016350 PF02163 Peptidase family M50 ABE28_016355 PF01551 Peptidase family M23 ABE28_016360 PF00575 S1 RNA binding domain ABE28_016365 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ABE28_016380 PF04085 rod shape-determining protein MreC ABE28_016390 PF04002 RadC-like JAB domain ABE28_016395 PF02545 Maf-like protein ABE28_016405 PF01478 Type IV leader peptidase family ABE28_016405 PF06750 Bacterial Peptidase A24 N-terminal domain ABE28_016410 PF02875 Mur ligase family, glutamate ligase domain ABE28_016410 PF08245 Mur ligase middle domain ABE28_016415 PF18030 RimK PreATP-grasp domain ABE28_016415 PF08443 RimK-like ATP-grasp domain ABE28_016420 PF18030 RimK PreATP-grasp domain ABE28_016420 PF08443 RimK-like ATP-grasp domain ABE28_016425 PF00133 tRNA synthetases class I (I, L, M and V) ABE28_016425 PF10458 Valyl tRNA synthetase tRNA binding arm ABE28_016425 PF08264 Anticodon-binding domain of tRNA ABE28_016440 PF01476 LysM domain ABE28_016445 PF00202 Aminotransferase class-III ABE28_016450 PF00490 Delta-aminolevulinic acid dehydratase ABE28_016460 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABE28_016460 PF03900 Porphobilinogen deaminase, C-terminal domain ABE28_016465 PF01578 Cytochrome C assembly protein ABE28_016470 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABE28_016470 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABE28_016470 PF01488 Shikimate / quinate 5-dehydrogenase ABE28_016480 PF01926 50S ribosome-binding GTPase ABE28_016485 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_016485 PF05362 Lon protease (S16) C-terminal proteolytic domain ABE28_016485 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABE28_016490 PF00004 ATPase family associated with various cellular activities (AAA) ABE28_016490 PF05362 Lon protease (S16) C-terminal proteolytic domain ABE28_016500 PF06689 ClpX C4-type zinc finger ABE28_016500 PF10431 C-terminal, D2-small domain, of ClpB protein ABE28_016500 PF07724 AAA domain (Cdc48 subfamily) ABE28_016505 PF05698 Bacterial trigger factor protein (TF) C-terminus ABE28_016505 PF05697 Bacterial trigger factor protein (TF) ABE28_016505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABE28_016515 PF00694 Aconitase C-terminal domain ABE28_016520 PF00330 Aconitase family (aconitate hydratase) ABE28_016525 PF00180 Isocitrate/isopropylmalate dehydrogenase ABE28_016530 PF08502 LeuA allosteric (dimerisation) domain ABE28_016530 PF00682 HMGL-like ABE28_016535 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABE28_016535 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABE28_016540 PF10369 Small subunit of acetolactate synthase ABE28_016540 PF01842 ACT domain ABE28_016545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABE28_016545 PF00205 Thiamine pyrophosphate enzyme, central domain ABE28_016545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABE28_016605 PF00005 ABC transporter ABE28_016625 PF12850 Calcineurin-like phosphoesterase superfamily domain ABE28_016630 PF01725 Ham1 family ABE28_016635 PF10646 Sporulation and spore germination ABE28_016640 PF01177 Asp/Glu/Hydantoin racemase ABE28_016645 PF01047 MarR family ABE28_016650 PF00196 Bacterial regulatory proteins, luxR family ABE28_016655 PF03061 Thioesterase superfamily ABE28_016660 PF13085 2Fe-2S iron-sulfur cluster binding domain ABE28_016660 PF13183 4Fe-4S dicluster domain ABE28_016665 PF00890 FAD binding domain ABE28_016665 PF02910 Fumarate reductase flavoprotein C-term ABE28_016670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABE28_016675 PF10702 Protein of unknown function (DUF2507) ABE28_016680 PF13840 ACT domain ABE28_016680 PF00696 Amino acid kinase family ABE28_016685 PF01541 GIY-YIG catalytic domain ABE28_016685 PF02151 UvrB/uvrC motif ABE28_016685 PF08459 UvrC Helix-hairpin-helix N-terminal ABE28_016690 PF00085 Thioredoxin ABE28_016695 PF00766 Electron transfer flavoprotein FAD-binding domain ABE28_016695 PF01012 Electron transfer flavoprotein domain ABE28_016700 PF01012 Electron transfer flavoprotein domain ABE28_016705 PF00378 Enoyl-CoA hydratase/isomerase ABE28_016710 PF00440 Bacterial regulatory proteins, tetR family ABE28_016710 PF08359 YsiA-like protein, C-terminal region ABE28_016715 PF00501 AMP-binding enzyme ABE28_016715 PF13193 AMP-binding enzyme C-terminal domain ABE28_016720 PF03994 Domain of Unknown Function (DUF350) ABE28_016725 PF01713 Smr domain ABE28_016725 PF00488 MutS domain V ABE28_016730 PF14716 Helix-hairpin-helix domain ABE28_016730 PF14791 DNA polymerase beta thumb ABE28_016730 PF02811 PHP domain ABE28_016735 PF02674 Colicin V production protein ABE28_016740 PF05164 Cell division protein ZapA ABE28_016745 PF01351 Ribonuclease HII ABE28_016745 PF11858 Domain of unknown function (DUF3378) ABE28_016750 PF01588 Putative tRNA binding domain ABE28_016750 PF03484 tRNA synthetase B5 domain ABE28_016750 PF03483 B3/4 domain ABE28_016750 PF03147 Ferredoxin-fold anticodon binding domain ABE28_016750 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABE28_016755 PF01409 tRNA synthetases class II core domain (F) ABE28_016755 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABE28_016760 PF00588 SpoU rRNA Methylase family ABE28_016760 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABE28_016765 PF14098 Small, acid-soluble spore protein I ABE28_016785 PF11181 Heat induced stress protein YflT ABE28_016785 PF09557 Domain of unknown function (DUF2382) ABE28_016790 PF02754 Cysteine-rich domain ABE28_016790 PF13183 4Fe-4S dicluster domain ABE28_016795 PF01565 FAD binding domain ABE28_016795 PF02913 FAD linked oxidases, C-terminal domain ABE28_016800 PF13556 PucR C-terminal helix-turn-helix domain ABE28_016800 PF05651 Putative sugar diacid recognition ABE28_016800 PF17853 GGDEF-like domain ABE28_016805 PF02652 L-lactate permease ABE28_016810 PF07729 FCD domain ABE28_016810 PF00392 Bacterial regulatory proteins, gntR family ABE28_016815 PF02754 Cysteine-rich domain ABE28_016820 PF02589 LUD domain ABE28_016820 PF13183 4Fe-4S dicluster domain ABE28_016820 PF11870 Domain of unknown function (DUF3390) ABE28_016825 PF02589 LUD domain ABE28_016830 PF05343 M42 glutamyl aminopeptidase ABE28_016850 PF06961 Protein of unknown function (DUF1294) ABE28_016855 PF00453 Ribosomal protein L20 ABE28_016860 PF01632 Ribosomal protein L35 ABE28_016865 PF00707 Translation initiation factor IF-3, C-terminal domain ABE28_016865 PF05198 Translation initiation factor IF-3, N-terminal domain ABE28_016870 PF00583 Acetyltransferase (GNAT) family ABE28_016875 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABE28_016875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABE28_016875 PF02824 TGS domain ABE28_016875 PF03129 Anticodon binding domain ABE28_016880 PF08812 YtxC-like family ABE28_016885 PF07319 Primosomal protein DnaI N-terminus ABE28_016885 PF01695 IstB-like ATP binding protein ABE28_016890 PF07261 Replication initiation and membrane attachment ABE28_016895 PF03477 ATP cone domain ABE28_016900 PF02675 S-adenosylmethionine decarboxylase ABE28_016905 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABE28_016905 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABE28_016910 PF01121 Dephospho-CoA kinase ABE28_016915 PF02659 Putative manganese efflux pump ABE28_016920 PF06827 Zinc finger found in FPG and IleRS ABE28_016920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ABE28_016920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ABE28_016925 PF00476 DNA polymerase family A ABE28_016925 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABE28_016925 PF01367 5'-3' exonuclease, C-terminal SAM fold ABE28_016930 PF01145 SPFH domain / Band 7 family ABE28_016935 PF12221 Bacterial membrane protein N terminal ABE28_016935 PF01145 SPFH domain / Band 7 family ABE28_016940 PF16736 Single Cache-like ABE28_016940 PF00512 His Kinase A (phospho-acceptor) domain ABE28_016940 PF00989 PAS fold ABE28_016940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_016945 PF00486 Transcriptional regulatory protein, C terminal ABE28_016945 PF00072 Response regulator receiver domain ABE28_016950 PF00056 lactate/malate dehydrogenase, NAD binding domain ABE28_016950 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABE28_016955 PF00180 Isocitrate/isopropylmalate dehydrogenase ABE28_016960 PF00285 Citrate synthase, C-terminal domain ABE28_016965 PF04284 Protein of unknown function (DUF441) ABE28_016970 PF01594 AI-2E family transporter ABE28_016975 PF00463 Isocitrate lyase family ABE28_016980 PF01274 Malate synthase ABE28_016990 PF00224 Pyruvate kinase, barrel domain ABE28_016990 PF00391 PEP-utilising enzyme, mobile domain ABE28_016990 PF02887 Pyruvate kinase, alpha/beta domain ABE28_016995 PF00365 Phosphofructokinase ABE28_017000 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABE28_017005 PF01039 Carboxyl transferase domain ABE28_017005 PF17848 Acetyl-coA carboxylase zinc finger domain ABE28_017010 PF00392 Bacterial regulatory proteins, gntR family ABE28_017010 PF07729 FCD domain ABE28_017015 PF00390 Malic enzyme, N-terminal domain ABE28_017015 PF03949 Malic enzyme, NAD binding domain ABE28_017020 PF02811 PHP domain ABE28_017020 PF14579 Helix-hairpin-helix motif ABE28_017020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABE28_017020 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABE28_017020 PF01336 OB-fold nucleic acid binding domain ABE28_017025 PF14034 Sporulation protein YtrH ABE28_017035 PF02272 DHHA1 domain ABE28_017035 PF01368 DHH family ABE28_017045 PF03061 Thioesterase superfamily ABE28_017045 PF00571 CBS domain ABE28_017045 PF07085 DRTGG domain ABE28_017045 PF00392 Bacterial regulatory proteins, gntR family ABE28_017070 PF00557 Metallopeptidase family M24 ABE28_017070 PF01321 Creatinase/Prolidase N-terminal domain ABE28_017080 PF00582 Universal stress protein family ABE28_017085 PF00206 Lyase ABE28_017085 PF14698 Argininosuccinate lyase C-terminal ABE28_017090 PF00764 Arginosuccinate synthase ABE28_017100 PF00994 Probable molybdopterin binding domain ABE28_017105 PF12787 EcsC protein family ABE28_017110 PF00871 Acetokinase family ABE28_017115 PF02384 N-6 DNA Methylase ABE28_017120 PF08534 Redoxin ABE28_017130 PF09579 Sporulation protein YtfJ (Spore_YtfJ) ABE28_017140 PF06271 RDD family ABE28_017145 PF01343 Peptidase family S49 ABE28_017150 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABE28_017155 PF07005 Sugar-binding N-terminal domain ABE28_017155 PF17042 Nucleotide-binding C-terminal domain ABE28_017160 PF03812 2-keto-3-deoxygluconate permease ABE28_017165 PF00072 Response regulator receiver domain ABE28_017165 PF02954 Bacterial regulatory protein, Fis family ABE28_017165 PF00158 Sigma-54 interaction domain ABE28_017170 PF01513 ATP-NAD kinase ABE28_017180 PF00005 ABC transporter ABE28_017185 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_017190 PF01910 Thiamine-binding protein ABE28_017195 PF09084 NMT1/THI5 like ABE28_017205 PF00892 EamA-like transporter family ABE28_017210 PF07969 Amidohydrolase family ABE28_017215 PF00501 AMP-binding enzyme ABE28_017215 PF13193 AMP-binding enzyme C-terminal domain ABE28_017220 PF00269 Small, acid-soluble spore proteins, alpha/beta type ABE28_017225 PF02568 Thiamine biosynthesis protein (ThiI) ABE28_017225 PF02926 THUMP domain ABE28_017230 PF00266 Aminotransferase class-V ABE28_017240 PF06160 Septation ring formation regulator, EzrA ABE28_017245 PF02811 PHP domain ABE28_017250 PF16295 Tetracyclin repressor-like, C-terminal domain ABE28_017250 PF00440 Bacterial regulatory proteins, tetR family ABE28_017255 PF13185 GAF domain ABE28_017260 PF00990 Diguanylate cyclase, GGDEF domain ABE28_017265 PF00163 Ribosomal protein S4/S9 N-terminal domain ABE28_017265 PF01479 S4 domain ABE28_017290 PF01479 S4 domain ABE28_017290 PF00579 tRNA synthetases class I (W and Y) ABE28_017295 PF00912 Transglycosylase ABE28_017295 PF00905 Penicillin binding protein transpeptidase domain ABE28_017300 PF13193 AMP-binding enzyme C-terminal domain ABE28_017300 PF00501 AMP-binding enzyme ABE28_017305 PF00583 Acetyltransferase (GNAT) family ABE28_017310 PF00571 CBS domain ABE28_017315 PF00850 Histone deacetylase domain ABE28_017325 PF00356 Bacterial regulatory proteins, lacI family ABE28_017330 PF01817 Chorismate mutase type II ABE28_017330 PF00793 DAHP synthetase I family ABE28_017335 PF02491 SHS2 domain inserted in FTSA ABE28_017345 PF11009 Protein of unknown function (DUF2847) ABE28_017350 PF12732 YtxH-like protein ABE28_017355 PF06103 Bacterial protein of unknown function (DUF948) ABE28_017360 PF02073 Thermophilic metalloprotease (M29) ABE28_017370 PF09397 Ftsk gamma domain ABE28_017370 PF17854 FtsK alpha domain ABE28_017370 PF01580 FtsK/SpoIIIE family ABE28_017375 PF07687 Peptidase dimerisation domain ABE28_017375 PF01546 Peptidase family M20/M25/M40 ABE28_017380 PF07285 Protein of unknown function (DUF1444) ABE28_017385 PF00085 Thioredoxin ABE28_017395 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ ABE28_017400 PF12833 Helix-turn-helix domain ABE28_017400 PF06445 GyrI-like small molecule binding domain ABE28_017405 PF01931 Protein of unknown function DUF84 ABE28_017410 PF05343 M42 glutamyl aminopeptidase ABE28_017420 PF00753 Metallo-beta-lactamase superfamily ABE28_017425 PF02390 Putative methyltransferase ABE28_017430 PF14165 YtzH-like protein ABE28_017435 PF01636 Phosphotransferase enzyme family ABE28_017445 PF00781 Diacylglycerol kinase catalytic domain ABE28_017455 PF02834 LigT like Phosphoesterase ABE28_017460 PF01566 Natural resistance-associated macrophage protein ABE28_017470 PF01063 Amino-transferase class IV ABE28_017475 PF01546 Peptidase family M20/M25/M40 ABE28_017485 PF09335 SNARE associated Golgi protein ABE28_017490 PF10502 Signal peptidase, peptidase S26 ABE28_017510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABE28_017515 PF02602 Uroporphyrinogen-III synthase HemD ABE28_017530 PF00056 lactate/malate dehydrogenase, NAD binding domain ABE28_017530 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABE28_017535 PF02652 L-lactate permease ABE28_017540 PF01323 DSBA-like thioredoxin domain ABE28_017550 PF00440 Bacterial regulatory proteins, tetR family ABE28_017555 PF00171 Aldehyde dehydrogenase family ABE28_017565 PF03773 Predicted permease ABE28_017575 PF00478 IMP dehydrogenase / GMP reductase domain ABE28_017580 PF03831 PhnA domain ABE28_017580 PF08274 PhnA Zinc-Ribbon ABE28_017585 PF00486 Transcriptional regulatory protein, C terminal ABE28_017585 PF00072 Response regulator receiver domain ABE28_017590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_017595 PF00005 ABC transporter ABE28_017625 PF13419 Haloacid dehalogenase-like hydrolase ABE28_017630 PF00266 Aminotransferase class-V ABE28_017640 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_017645 PF08402 TOBE domain ABE28_017645 PF00005 ABC transporter ABE28_017650 PF08220 DeoR-like helix-turn-helix domain ABE28_017650 PF00455 DeoR C terminal sensor domain ABE28_017655 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABE28_017655 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABE28_017660 PF02805 Metal binding domain of Ada ABE28_017660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABE28_017660 PF12833 Helix-turn-helix domain ABE28_017660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABE28_017670 PF08220 DeoR-like helix-turn-helix domain ABE28_017675 PF00849 RNA pseudouridylate synthase ABE28_017675 PF01479 S4 domain ABE28_017680 PF01943 Polysaccharide biosynthesis protein ABE28_017680 PF14667 Polysaccharide biosynthesis C-terminal domain ABE28_017705 PF10957 Sporulation protein Cse60 ABE28_017715 PF00581 Rhodanese-like domain ABE28_017720 PF07690 Major Facilitator Superfamily ABE28_017725 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABE28_017725 PF00391 PEP-utilising enzyme, mobile domain ABE28_017730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABE28_017740 PF00248 Aldo/keto reductase family ABE28_017745 PF07690 Major Facilitator Superfamily ABE28_017750 PF01638 HxlR-like helix-turn-helix ABE28_017765 PF01773 Na+ dependent nucleoside transporter N-terminus ABE28_017765 PF07662 Na+ dependent nucleoside transporter C-terminus ABE28_017770 PF12146 Serine aminopeptidase, S33 ABE28_017790 PF00440 Bacterial regulatory proteins, tetR family ABE28_017790 PF08361 MAATS-type transcriptional repressor, C-terminal region ABE28_017800 PF04055 Radical SAM superfamily ABE28_017805 PF01242 6-pyruvoyl tetrahydropterin synthase ABE28_017810 PF06508 Queuosine biosynthesis protein QueC ABE28_017815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_017815 PF02743 Cache domain ABE28_017815 PF00672 HAMP domain ABE28_017825 PF08245 Mur ligase middle domain ABE28_017830 PF14102 Capsule biosynthesis CapC ABE28_017835 PF09587 Bacterial capsule synthesis protein PGA_cap ABE28_017845 PF05908 Poly-gamma-glutamate hydrolase ABE28_017850 PF00877 NlpC/P60 family ABE28_017860 PF02040 Arsenical pump membrane protein ABE28_017865 PF02743 Cache domain ABE28_017865 PF00672 HAMP domain ABE28_017865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_017875 PF12867 DinB superfamily ABE28_017880 PF03845 Spore germination protein ABE28_017885 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_017895 PF00872 Transposase, Mutator family ABE28_017900 PF00583 Acetyltransferase (GNAT) family ABE28_017905 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ABE28_017905 PF18277 AbrB C-terminal domain ABE28_017910 PF13536 Putative multidrug resistance efflux transporter ABE28_017915 PF00893 Small Multidrug Resistance protein ABE28_017920 PF00893 Small Multidrug Resistance protein ABE28_017930 PF04434 SWIM zinc finger ABE28_017930 PF00271 Helicase conserved C-terminal domain ABE28_017930 PF00176 SNF2 family N-terminal domain ABE28_017940 PF03845 Spore germination protein ABE28_017945 PF05504 Spore germination B3/ GerAC like, C-terminal ABE28_017950 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_017955 PF09335 SNARE associated Golgi protein ABE28_017960 PF01569 PAP2 superfamily ABE28_017965 PF00067 Cytochrome P450 ABE28_017980 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABE28_017980 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABE28_017985 PF00202 Aminotransferase class-III ABE28_017990 PF00171 Aldehyde dehydrogenase family ABE28_018000 PF00158 Sigma-54 interaction domain ABE28_018000 PF02954 Bacterial regulatory protein, Fis family ABE28_018000 PF13426 PAS domain ABE28_018005 PF02525 Flavodoxin-like fold ABE28_018010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_018015 PF07681 DoxX ABE28_018025 PF01554 MatE ABE28_018030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_018030 PF00005 ABC transporter ABE28_018035 PF00005 ABC transporter ABE28_018040 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_018045 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_018060 PF00005 ABC transporter ABE28_018075 PF00440 Bacterial regulatory proteins, tetR family ABE28_018075 PF17934 Tetracyclin repressor-like, C-terminal domain ABE28_018080 PF08125 Mannitol dehydrogenase C-terminal domain ABE28_018080 PF01232 Mannitol dehydrogenase Rossmann domain ABE28_018085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_018085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABE28_018085 PF00874 PRD domain ABE28_018085 PF08279 HTH domain ABE28_018085 PF05043 Mga helix-turn-helix domain ABE28_018090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABE28_018090 PF02378 Phosphotransferase system, EIIC ABE28_018090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABE28_018095 PF03600 Citrate transporter ABE28_018100 PF00557 Metallopeptidase family M24 ABE28_018105 PF12431 Transcriptional regulator ABE28_018105 PF00072 Response regulator receiver domain ABE28_018105 PF08279 HTH domain ABE28_018110 PF17203 Single cache domain 3 ABE28_018110 PF00989 PAS fold ABE28_018110 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ABE28_018110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_018115 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain ABE28_018115 PF00730 HhH-GPD superfamily base excision DNA repair protein ABE28_018120 PF12833 Helix-turn-helix domain ABE28_018120 PF02805 Metal binding domain of Ada ABE28_018125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABE28_018125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABE28_018130 PF10901 Protein of unknown function (DUF2690) ABE28_018135 PF10901 Protein of unknown function (DUF2690) ABE28_018145 PF03932 CutC family ABE28_018150 PF02082 Transcriptional regulator ABE28_018155 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_018160 PF13411 MerR HTH family regulatory protein ABE28_018160 PF07739 TipAS antibiotic-recognition domain ABE28_018165 PF00805 Pentapeptide repeats (8 copies) ABE28_018175 PF02522 Aminoglycoside 3-N-acetyltransferase ABE28_018185 PF00375 Sodium:dicarboxylate symporter family ABE28_018205 PF00324 Amino acid permease ABE28_018215 PF02683 Cytochrome C biogenesis protein transmembrane region ABE28_018230 PF00072 Response regulator receiver domain ABE28_018230 PF00196 Bacterial regulatory proteins, luxR family ABE28_018235 PF07730 Histidine kinase ABE28_018235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_018235 PF00672 HAMP domain ABE28_018245 PF04012 PspA/IM30 family ABE28_018255 PF00440 Bacterial regulatory proteins, tetR family ABE28_018260 PF00266 Aminotransferase class-V ABE28_018265 PF00324 Amino acid permease ABE28_018270 PF03301 Tryptophan 2,3-dioxygenase ABE28_018275 PF04199 Putative cyclase ABE28_018285 PF01810 LysE type translocator ABE28_018295 PF13091 PLD-like domain ABE28_018310 PF00258 Flavodoxin ABE28_018315 PF00873 AcrB/AcrD/AcrF family ABE28_018330 PF00149 Calcineurin-like phosphoesterase ABE28_018340 PF00005 ABC transporter ABE28_018340 PF02687 FtsX-like permease family ABE28_018340 PF12704 MacB-like periplasmic core domain ABE28_018375 PF12746 GNAT acetyltransferase ABE28_018380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_018380 PF03466 LysR substrate binding domain ABE28_018390 PF03473 MOSC domain ABE28_018390 PF03475 3-alpha domain ABE28_018395 PF07690 Major Facilitator Superfamily ABE28_018400 PF00440 Bacterial regulatory proteins, tetR family ABE28_018405 PF00324 Amino acid permease ABE28_018410 PF07690 Major Facilitator Superfamily ABE28_018415 PF01810 LysE type translocator ABE28_018420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABE28_018420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABE28_018420 PF02824 TGS domain ABE28_018420 PF03129 Anticodon binding domain ABE28_018440 PF07687 Peptidase dimerisation domain ABE28_018440 PF01546 Peptidase family M20/M25/M40 ABE28_018445 PF01144 Coenzyme A transferase ABE28_018450 PF01144 Coenzyme A transferase ABE28_018455 PF00202 Aminotransferase class-III ABE28_018470 PF12544 Lysine-2,3-aminomutase ABE28_018475 PF13302 Acetyltransferase (GNAT) domain ABE28_018480 PF02954 Bacterial regulatory protein, Fis family ABE28_018480 PF13426 PAS domain ABE28_018480 PF00158 Sigma-54 interaction domain ABE28_018490 PF13539 D-alanyl-D-alanine carboxypeptidase ABE28_018495 PF01144 Coenzyme A transferase ABE28_018500 PF01144 Coenzyme A transferase ABE28_018510 PF02954 Bacterial regulatory protein, Fis family ABE28_018510 PF00158 Sigma-54 interaction domain ABE28_018510 PF00989 PAS fold ABE28_018520 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABE28_018520 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABE28_018530 PF00561 alpha/beta hydrolase fold ABE28_018550 PF04134 Protein of unknown function, DUF393 ABE28_018580 PF02810 SEC-C motif ABE28_018580 PF07517 SecA DEAD-like domain ABE28_018580 PF01043 SecA preprotein cross-linking domain ABE28_018580 PF07516 SecA Wing and Scaffold domain ABE28_018605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_018605 PF03466 LysR substrate binding domain ABE28_018615 PF01048 Phosphorylase superfamily ABE28_018635 PF03734 L,D-transpeptidase catalytic domain ABE28_018635 PF01476 LysM domain ABE28_018660 PF00248 Aldo/keto reductase family ABE28_018665 PF00672 HAMP domain ABE28_018665 PF05227 CHASE3 domain ABE28_018665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_018670 PF00392 Bacterial regulatory proteins, gntR family ABE28_018670 PF00155 Aminotransferase class I and II ABE28_018675 PF00892 EamA-like transporter family ABE28_018690 PF00293 NUDIX domain ABE28_018705 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH ABE28_018705 PF04740 LXG domain of WXG superfamily ABE28_018715 PF07690 Major Facilitator Superfamily ABE28_018715 PF00083 Sugar (and other) transporter ABE28_018720 PF02423 Ornithine cyclodeaminase/mu-crystallin family ABE28_018745 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH ABE28_018745 PF04740 LXG domain of WXG superfamily ABE28_018755 PF00083 Sugar (and other) transporter ABE28_018755 PF07690 Major Facilitator Superfamily ABE28_018760 PF02423 Ornithine cyclodeaminase/mu-crystallin family ABE28_018785 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH ABE28_018785 PF04740 LXG domain of WXG superfamily ABE28_018790 PF07690 Major Facilitator Superfamily ABE28_018800 PF00005 ABC transporter ABE28_018800 PF00664 ABC transporter transmembrane region ABE28_018810 PF00005 ABC transporter ABE28_018815 PF01032 FecCD transport family ABE28_018820 PF03180 NLPA lipoprotein ABE28_018825 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_018830 PF09383 NIL domain ABE28_018830 PF00005 ABC transporter ABE28_018835 PF00756 Putative esterase ABE28_018845 PF00155 Aminotransferase class I and II ABE28_018855 PF00512 His Kinase A (phospho-acceptor) domain ABE28_018855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_018860 PF17755 UvrA DNA-binding domain ABE28_018860 PF17760 UvrA interaction domain ABE28_018870 PF13538 UvrD-like helicase C-terminal domain ABE28_018875 PF05901 Excalibur calcium-binding domain ABE28_018900 PF02868 Thermolysin metallopeptidase, alpha-helical domain ABE28_018900 PF01447 Thermolysin metallopeptidase, catalytic domain ABE28_018900 PF16485 Protealysin propeptide ABE28_018905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABE28_018905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABE28_018905 PF01842 ACT domain ABE28_018920 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ABE28_018920 PF08666 SAF domain ABE28_018930 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ABE28_018930 PF08666 SAF domain ABE28_018935 PF03812 2-keto-3-deoxygluconate permease ABE28_018945 PF00701 Dihydrodipicolinate synthetase family ABE28_018950 PF00171 Aldehyde dehydrogenase family ABE28_018955 PF01614 Bacterial transcriptional regulator ABE28_018955 PF09339 IclR helix-turn-helix domain ABE28_018970 PF05593 RHS Repeat ABE28_018985 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ABE28_019000 PF07875 Coat F domain ABE28_019015 PF00905 Penicillin binding protein transpeptidase domain ABE28_019040 PF00106 short chain dehydrogenase ABE28_019055 PF00293 NUDIX domain ABE28_019065 PF00667 FAD binding domain ABE28_019065 PF00258 Flavodoxin ABE28_019065 PF00175 Oxidoreductase NAD-binding domain ABE28_019065 PF00067 Cytochrome P450 ABE28_019070 PF00440 Bacterial regulatory proteins, tetR family ABE28_019070 PF16295 Tetracyclin repressor-like, C-terminal domain ABE28_019075 PF03641 Possible lysine decarboxylase ABE28_019085 PF01569 PAP2 superfamily ABE28_019090 PF07690 Major Facilitator Superfamily ABE28_019110 PF01817 Chorismate mutase type II ABE28_019110 PF00793 DAHP synthetase I family ABE28_019120 PF07883 Cupin domain ABE28_019135 PF07690 Major Facilitator Superfamily ABE28_019140 PF00155 Aminotransferase class I and II ABE28_019155 PF07687 Peptidase dimerisation domain ABE28_019155 PF01546 Peptidase family M20/M25/M40 ABE28_019160 PF03180 NLPA lipoprotein ABE28_019165 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_019170 PF00005 ABC transporter ABE28_019170 PF09383 NIL domain ABE28_019180 PF01979 Amidohydrolase family ABE28_019185 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_019185 PF00107 Zinc-binding dehydrogenase ABE28_019195 PF01425 Amidase ABE28_019225 PF03328 HpcH/HpaI aldolase/citrate lyase family ABE28_019230 PF12697 Alpha/beta hydrolase family ABE28_019240 PF00171 Aldehyde dehydrogenase family ABE28_019245 PF00465 Iron-containing alcohol dehydrogenase ABE28_019255 PF00356 Bacterial regulatory proteins, lacI family ABE28_019265 PF03611 PTS system sugar-specific permease component ABE28_019280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABE28_019285 PF07690 Major Facilitator Superfamily ABE28_019290 PF07561 Domain of Unknown Function (DUF1540) ABE28_019295 PF02554 Carbon starvation protein CstA ABE28_019295 PF13722 5TM C-terminal transporter carbon starvation CstA ABE28_019300 PF04397 LytTr DNA-binding domain ABE28_019300 PF00072 Response regulator receiver domain ABE28_019305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_019305 PF06580 Histidine kinase ABE28_019305 PF07694 5TMR of 5TMR-LYT ABE28_019310 PF01713 Smr domain ABE28_019310 PF00488 MutS domain V ABE28_019320 PF07690 Major Facilitator Superfamily ABE28_019325 PF01546 Peptidase family M20/M25/M40 ABE28_019330 PF01979 Amidohydrolase family ABE28_019330 PF13382 Adenine deaminase C-terminal domain ABE28_019335 PF00005 ABC transporter ABE28_019335 PF08402 TOBE domain ABE28_019340 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_019345 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_019350 PF01156 Inosine-uridine preferring nucleoside hydrolase ABE28_019365 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ABE28_019365 PF02378 Phosphotransferase system, EIIC ABE28_019365 PF00367 phosphotransferase system, EIIB ABE28_019370 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ABE28_019375 PF00206 Lyase ABE28_019375 PF10415 Fumarase C C-terminus ABE28_019380 PF01418 Helix-turn-helix domain, rpiR family ABE28_019380 PF01380 SIS domain ABE28_019385 PF00881 Nitroreductase family ABE28_019405 PF00860 Permease family ABE28_019410 PF07969 Amidohydrolase family ABE28_019415 PF07969 Amidohydrolase family ABE28_019420 PF07969 Amidohydrolase family ABE28_019425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABE28_019430 PF01979 Amidohydrolase family ABE28_019435 PF01979 Amidohydrolase family ABE28_019440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABE28_019450 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_019455 PF00005 ABC transporter ABE28_019455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_019460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_019460 PF00005 ABC transporter ABE28_019465 PF07694 5TMR of 5TMR-LYT ABE28_019465 PF06580 Histidine kinase ABE28_019465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_019465 PF13492 GAF domain ABE28_019470 PF17853 GGDEF-like domain ABE28_019470 PF12833 Helix-turn-helix domain ABE28_019480 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABE28_019500 PF08486 Stage II sporulation protein ABE28_019505 PF03845 Spore germination protein ABE28_019515 PF03358 NADPH-dependent FMN reductase ABE28_019525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_019525 PF03466 LysR substrate binding domain ABE28_019565 PF00561 alpha/beta hydrolase fold ABE28_019595 PF08281 Sigma-70, region 4 ABE28_019595 PF04542 Sigma-70 region 2 ABE28_019625 PF03466 LysR substrate binding domain ABE28_019625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_019635 PF00892 EamA-like transporter family ABE28_019640 PF00892 EamA-like transporter family ABE28_019645 PF00890 FAD binding domain ABE28_019645 PF14537 Cytochrome c3 ABE28_019650 PF03466 LysR substrate binding domain ABE28_019650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_019660 PF03600 Citrate transporter ABE28_019675 PF07883 Cupin domain ABE28_019680 PF00535 Glycosyl transferase family 2 ABE28_019680 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ABE28_019705 PF00144 Beta-lactamase ABE28_019710 PF07486 Cell Wall Hydrolase ABE28_019715 PF09671 Spore coat protein (Spore_GerQ) ABE28_019720 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABE28_019725 PF00510 Cytochrome c oxidase subunit III ABE28_019730 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABE28_019735 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ABE28_019795 PF13474 SnoaL-like domain ABE28_019850 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_019850 PF00107 Zinc-binding dehydrogenase ABE28_019860 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_019865 PF03845 Spore germination protein ABE28_019870 PF13302 Acetyltransferase (GNAT) domain ABE28_019880 PF01037 Lrp/AsnC ligand binding domain ABE28_019885 PF01965 DJ-1/PfpI family ABE28_019890 PF07849 Protein of unknown function (DUF1641) ABE28_019895 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_019900 PF01380 SIS domain ABE28_019905 PF03485 Arginyl tRNA synthetase N terminal domain ABE28_019905 PF05746 DALR anticodon binding domain ABE28_019905 PF00750 tRNA synthetases class I (R) ABE28_019910 PF00196 Bacterial regulatory proteins, luxR family ABE28_019910 PF00072 Response regulator receiver domain ABE28_019915 PF00487 Fatty acid desaturase ABE28_019920 PF00704 Glycosyl hydrolases family 18 ABE28_019925 PF00892 EamA-like transporter family ABE28_019930 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) ABE28_019945 PF00440 Bacterial regulatory proteins, tetR family ABE28_019970 PF18416 N-acetylglucosamine binding protein domain 2 ABE28_019970 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading ABE28_019975 PF12679 ABC-2 family transporter protein ABE28_019980 PF00005 ABC transporter ABE28_019985 PF13419 Haloacid dehalogenase-like hydrolase ABE28_019990 PF07501 G5 domain ABE28_019990 PF06725 3D domain ABE28_019990 PF03990 G5-linked-Ubiquitin-like domain ABE28_020000 PF01636 Phosphotransferase enzyme family ABE28_020005 PF10787 Uncharacterised protein from bacillus cereus group ABE28_020020 PF01263 Aldose 1-epimerase ABE28_020025 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ABE28_020025 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ABE28_020030 PF00288 GHMP kinases N terminal domain ABE28_020030 PF08544 GHMP kinases C terminal ABE28_020030 PF10509 Galactokinase galactose-binding signature ABE28_020035 PF02837 Glycosyl hydrolases family 2, sugar binding domain ABE28_020035 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ABE28_020035 PF16353 Domain of unknown function(DUF4981) ABE28_020035 PF00703 Glycosyl hydrolases family 2 ABE28_020035 PF02929 Beta galactosidase small chain ABE28_020040 PF00356 Bacterial regulatory proteins, lacI family ABE28_020045 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_020050 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_020055 PF13416 Bacterial extracellular solute-binding protein ABE28_020060 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal ABE28_020060 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal ABE28_020075 PF05525 Branched-chain amino acid transport protein ABE28_020090 PF03313 Serine dehydratase alpha chain ABE28_020095 PF03315 Serine dehydratase beta chain ABE28_020095 PF01842 ACT domain ABE28_020100 PF04235 Protein of unknown function (DUF418) ABE28_020105 PF04231 Endonuclease I ABE28_020110 PF02872 5'-nucleotidase, C-terminal domain ABE28_020110 PF00149 Calcineurin-like phosphoesterase ABE28_020120 PF00005 ABC transporter ABE28_020125 PF00892 EamA-like transporter family ABE28_020130 PF01546 Peptidase family M20/M25/M40 ABE28_020130 PF07687 Peptidase dimerisation domain ABE28_020140 PF13411 MerR HTH family regulatory protein ABE28_020140 PF06445 GyrI-like small molecule binding domain ABE28_020145 PF00583 Acetyltransferase (GNAT) family ABE28_020155 PF00005 ABC transporter ABE28_020160 PF00440 Bacterial regulatory proteins, tetR family ABE28_020175 PF02386 Cation transport protein ABE28_020180 PF02080 TrkA-C domain ABE28_020180 PF02254 TrkA-N domain ABE28_020185 PF01740 STAS domain ABE28_020190 PF03551 Transcriptional regulator PadR-like family ABE28_020200 PF16363 GDP-mannose 4,6 dehydratase ABE28_020205 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ABE28_020205 PF00535 Glycosyl transferase family 2 ABE28_020210 PF00483 Nucleotidyl transferase ABE28_020215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABE28_020215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABE28_020215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABE28_020215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABE28_020220 PF13460 NAD(P)H-binding ABE28_020225 PF02600 Disulfide bond formation protein DsbB ABE28_020230 PF13462 Thioredoxin ABE28_020235 PF02082 Transcriptional regulator ABE28_020240 PF08239 Bacterial SH3 domain ABE28_020240 PF05036 Sporulation related domain ABE28_020240 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ABE28_020255 PF08327 Activator of Hsp90 ATPase homolog 1-like protein ABE28_020260 PF01022 Bacterial regulatory protein, arsR family ABE28_020270 PF02082 Transcriptional regulator ABE28_020275 PF00085 Thioredoxin ABE28_020285 PF01270 Glycosyl hydrolases family 8 ABE28_020290 PF01596 O-methyltransferase ABE28_020330 PF01047 MarR family ABE28_020335 PF07690 Major Facilitator Superfamily ABE28_020350 PF00005 ABC transporter ABE28_020360 PF01370 NAD dependent epimerase/dehydratase family ABE28_020370 PF13673 Acetyltransferase (GNAT) domain ABE28_020370 PF04229 GrpB protein ABE28_020400 PF01872 RibD C-terminal domain ABE28_020410 PF12727 PBP superfamily domain ABE28_020410 PF12728 Helix-turn-helix domain ABE28_020420 PF00155 Aminotransferase class I and II ABE28_020425 PF02632 BioY family ABE28_020435 PF00202 Aminotransferase class-III ABE28_020445 PF00675 Insulinase (Peptidase family M16) ABE28_020470 PF13537 Glutamine amidotransferase domain ABE28_020470 PF00733 Asparagine synthase ABE28_020485 PF00854 POT family ABE28_020495 PF11738 Protein of unknown function (DUF3298) ABE28_020495 PF13739 Deacetylase PdaC ABE28_020500 PF08281 Sigma-70, region 4 ABE28_020500 PF04542 Sigma-70 region 2 ABE28_020505 PF11738 Protein of unknown function (DUF3298) ABE28_020505 PF01522 Polysaccharide deacetylase ABE28_020505 PF13739 Deacetylase PdaC ABE28_020510 PF01709 Transcriptional regulator ABE28_020530 PF00092 von Willebrand factor type A domain ABE28_020535 PF07728 AAA domain (dynein-related subfamily) ABE28_020540 PF13460 NAD(P)H-binding ABE28_020555 PF05726 Pirin C-terminal cupin domain ABE28_020555 PF02678 Pirin ABE28_020570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABE28_020570 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_020575 PF00310 Glutamine amidotransferases class-II ABE28_020575 PF01493 GXGXG motif ABE28_020575 PF04898 Glutamate synthase central domain ABE28_020575 PF01645 Conserved region in glutamate synthase ABE28_020580 PF03466 LysR substrate binding domain ABE28_020580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_020610 PF17936 Bacterial Ig domain ABE28_020610 PF00082 Subtilase family ABE28_020615 PF09334 tRNA synthetases class I (M) ABE28_020615 PF13603 Leucyl-tRNA synthetase, Domain 2 ABE28_020615 PF08264 Anticodon-binding domain of tRNA ABE28_020615 PF00133 tRNA synthetases class I (I, L, M and V) ABE28_020620 PF10732 Protein of unknown function (DUF2524) ABE28_020625 PF09346 SMI1 / KNR4 family (SUKH-1) ABE28_020630 PF04055 Radical SAM superfamily ABE28_020630 PF16199 Radical_SAM C-terminal domain ABE28_020635 PF06962 Putative rRNA methylase ABE28_020645 PF12146 Serine aminopeptidase, S33 ABE28_020650 PF00132 Bacterial transferase hexapeptide (six repeats) ABE28_020660 PF01293 Phosphoenolpyruvate carboxykinase ABE28_020665 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABE28_020665 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABE28_020665 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABE28_020680 PF02350 UDP-N-acetylglucosamine 2-epimerase ABE28_020685 PF05227 CHASE3 domain ABE28_020685 PF00672 HAMP domain ABE28_020685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_020700 PF10763 Protein of unknown function (DUF2584) ABE28_020705 PF00326 Prolyl oligopeptidase family ABE28_020715 PF09318 Glycosyl transferase 1 domain A ABE28_020715 PF00534 Glycosyl transferases group 1 ABE28_020720 PF00239 Resolvase, N terminal domain ABE28_020720 PF02796 Helix-turn-helix domain of resolvase ABE28_020730 PF00005 ABC transporter ABE28_020735 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_020740 PF00293 NUDIX domain ABE28_020755 PF00210 Ferritin-like domain ABE28_020760 PF02664 S-Ribosylhomocysteinase (LuxS) ABE28_020765 PF01809 Putative membrane protein insertion efficiency factor ABE28_020770 PF01297 Zinc-uptake complex component A periplasmic ABE28_020770 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment ABE28_020775 PF03480 Bacterial extracellular solute-binding protein, family 7 ABE28_020780 PF17203 Single cache domain 3 ABE28_020780 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ABE28_020780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_020785 PF00072 Response regulator receiver domain ABE28_020785 PF04703 FaeA-like protein ABE28_020790 PF13378 Enolase C-terminal domain-like ABE28_020790 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABE28_020795 PF00501 AMP-binding enzyme ABE28_020795 PF13193 AMP-binding enzyme C-terminal domain ABE28_020800 PF00378 Enoyl-CoA hydratase/isomerase ABE28_020805 PF00561 alpha/beta hydrolase fold ABE28_020810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABE28_020810 PF16582 Middle domain of thiamine pyrophosphate ABE28_020810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABE28_020815 PF00425 chorismate binding enzyme ABE28_020820 PF01040 UbiA prenyltransferase family ABE28_020825 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABE28_020965 PF02308 MgtC family ABE28_020975 PF00155 Aminotransferase class I and II ABE28_020990 PF01619 Proline dehydrogenase ABE28_020995 PF00171 Aldehyde dehydrogenase family ABE28_021005 PF13556 PucR C-terminal helix-turn-helix domain ABE28_021005 PF17853 GGDEF-like domain ABE28_021010 PF00753 Metallo-beta-lactamase superfamily ABE28_021015 PF01266 FAD dependent oxidoreductase ABE28_021015 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ABE28_021020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABE28_021020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABE28_021025 PF00230 Major intrinsic protein ABE28_021030 PF04309 Glycerol-3-phosphate responsive antiterminator ABE28_021040 PF01717 Cobalamin-independent synthase, Catalytic domain ABE28_021060 PF02515 CoA-transferase family III ABE28_021065 PF00324 Amino acid permease ABE28_021070 PF01447 Thermolysin metallopeptidase, catalytic domain ABE28_021070 PF03413 Peptidase propeptide and YPEB domain ABE28_021070 PF02868 Thermolysin metallopeptidase, alpha-helical domain ABE28_021070 PF07504 Fungalysin/Thermolysin Propeptide Motif ABE28_021090 PF00933 Glycosyl hydrolase family 3 N terminal domain ABE28_021090 PF01915 Glycosyl hydrolase family 3 C-terminal domain ABE28_021100 PF11495 Archaeal transcriptional regulator TrmB ABE28_021100 PF01978 Sugar-specific transcriptional regulator TrmB ABE28_021105 PF01925 Sulfite exporter TauE/SafE ABE28_021115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABE28_021120 PF08240 Alcohol dehydrogenase GroES-like domain ABE28_021120 PF00107 Zinc-binding dehydrogenase ABE28_021125 PF07486 Cell Wall Hydrolase ABE28_021130 PF06949 Protein of unknown function (DUF1292) ABE28_021135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABE28_021140 PF00253 Ribosomal protein S14p/S29e ABE28_021145 PF00471 Ribosomal protein L33 ABE28_021150 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABE28_021150 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABE28_021155 PF01541 GIY-YIG catalytic domain ABE28_021160 PF11611 Domain of unknown function (DUF4352) ABE28_021160 PF08139 Prokaryotic membrane lipoprotein lipid attachment site ABE28_021165 PF00245 Alkaline phosphatase ABE28_021170 PF02222 ATP-grasp domain ABE28_021180 PF01476 LysM domain ABE28_021180 PF00246 Zinc carboxypeptidase ABE28_021185 PF06628 Catalase-related immune-responsive ABE28_021185 PF00199 Catalase ABE28_021195 PF00440 Bacterial regulatory proteins, tetR family ABE28_021200 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ABE28_021205 PF04231 Endonuclease I ABE28_021210 PF00324 Amino acid permease ABE28_021220 PF02872 5'-nucleotidase, C-terminal domain ABE28_021220 PF00149 Calcineurin-like phosphoesterase ABE28_021225 PF05163 DinB family ABE28_021235 PF04545 Sigma-70, region 4 ABE28_021245 PF01804 Penicillin amidase ABE28_021250 PF00872 Transposase, Mutator family ABE28_021270 PF07690 Major Facilitator Superfamily ABE28_021275 PF13520 Amino acid permease ABE28_021280 PF02673 Bacitracin resistance protein BacA ABE28_021285 PF03009 Glycerophosphoryl diester phosphodiesterase family ABE28_021290 PF00269 Small, acid-soluble spore proteins, alpha/beta type ABE28_021295 PF00704 Glycosyl hydrolases family 18 ABE28_021295 PF01476 LysM domain ABE28_021300 PF07885 Ion channel ABE28_021300 PF02254 TrkA-N domain ABE28_021305 PF08868 YugN-like family ABE28_021315 PF00342 Phosphoglucose isomerase ABE28_021320 PF00465 Iron-containing alcohol dehydrogenase ABE28_021325 PF04070 Domain of unknown function (DUF378) ABE28_021330 PF00575 S1 RNA binding domain ABE28_021340 PF00155 Aminotransferase class I and II ABE28_021345 PF01037 Lrp/AsnC ligand binding domain ABE28_021350 PF00561 alpha/beta hydrolase fold ABE28_021350 PF08386 TAP-like protein ABE28_021360 PF00155 Aminotransferase class I and II ABE28_021370 PF01497 Periplasmic binding protein ABE28_021375 PF01032 FecCD transport family ABE28_021380 PF00005 ABC transporter ABE28_021385 PF10615 Protein of unknown function (DUF2470) ABE28_021385 PF01243 Pyridoxamine 5'-phosphate oxidase ABE28_021400 PF00005 ABC transporter ABE28_021410 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABE28_021420 PF08000 Bacterial PH domain ABE28_021420 PF11724 YvbH-like oligomerisation region ABE28_021425 PF00583 Acetyltransferase (GNAT) family ABE28_021435 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABE28_021440 PF08810 Kinase associated protein B ABE28_021445 PF00929 Exonuclease ABE28_021450 PF00905 Penicillin binding protein transpeptidase domain ABE28_021450 PF00912 Transglycosylase ABE28_021460 PF17328 Family of unknown function (DUF5366) ABE28_021465 PF13244 Domain of unknown function (DUF4040) ABE28_021465 PF00361 Proton-conducting membrane transporter ABE28_021465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABE28_021470 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ABE28_021475 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABE28_021480 PF00361 Proton-conducting membrane transporter ABE28_021485 PF01899 Na+/H+ ion antiporter subunit ABE28_021490 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ABE28_021505 PF03061 Thioesterase superfamily ABE28_021510 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) ABE28_021515 PF01494 FAD binding domain ABE28_021520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABE28_021520 PF01872 RibD C-terminal domain ABE28_021525 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABE28_021525 PF00925 GTP cyclohydrolase II ABE28_021535 PF02789 Cytosol aminopeptidase family, N-terminal domain ABE28_021535 PF00883 Cytosol aminopeptidase family, catalytic domain ABE28_021540 PF02681 Divergent PAP2 family ABE28_021550 PF06725 3D domain ABE28_021555 PF14068 Putative membrane protein ABE28_021560 PF13344 Haloacid dehalogenase-like hydrolase ABE28_021560 PF00293 NUDIX domain ABE28_021565 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_021570 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_021580 PF01521 Iron-sulphur cluster biosynthesis ABE28_021590 PF07293 Protein of unknown function (DUF1450) ABE28_021595 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_021600 PF07315 Protein of unknown function (DUF1462) ABE28_021605 PF01106 NifU-like domain ABE28_021610 PF00288 GHMP kinases N terminal domain ABE28_021610 PF08544 GHMP kinases C terminal ABE28_021615 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_021620 PF00742 Homoserine dehydrogenase ABE28_021620 PF03447 Homoserine dehydrogenase, NAD binding domain ABE28_021620 PF01842 ACT domain ABE28_021635 PF04608 Phosphatidylglycerophosphatase A ABE28_021640 PF13276 HTH-like domain ABE28_021640 PF00665 Integrase core domain ABE28_021640 PF13333 Integrase core domain ABE28_021650 PF13344 Haloacid dehalogenase-like hydrolase ABE28_021655 PF01934 Protein of unknown function DUF86 ABE28_021670 PF06265 Protein of unknown function (DUF1027) ABE28_021675 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) ABE28_021680 PF04055 Radical SAM superfamily ABE28_021680 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ABE28_021685 PF01551 Peptidase family M23 ABE28_021690 PF09560 Sporulation protein YunB (Spo_YunB) ABE28_021695 PF11871 Domain of unknown function (DUF3391) ABE28_021695 PF01966 HD domain ABE28_021700 PF08827 Domain of unknown function (DUF1805) ABE28_021705 PF02872 5'-nucleotidase, C-terminal domain ABE28_021710 PF01925 Sulfite exporter TauE/SafE ABE28_021715 PF01904 Protein of unknown function DUF72 ABE28_021725 PF01458 Uncharacterized protein family (UPF0051) ABE28_021730 PF01592 NifU-like N terminal domain ABE28_021735 PF00266 Aminotransferase class-V ABE28_021740 PF01458 Uncharacterized protein family (UPF0051) ABE28_021745 PF00005 ABC transporter ABE28_021760 PF13333 Integrase core domain ABE28_021760 PF00665 Integrase core domain ABE28_021760 PF13276 HTH-like domain ABE28_021765 PF03180 NLPA lipoprotein ABE28_021770 PF00528 Binding-protein-dependent transport system inner membrane component ABE28_021775 PF09383 NIL domain ABE28_021775 PF00005 ABC transporter ABE28_021780 PF01053 Cys/Met metabolism PLP-dependent enzyme ABE28_021785 PF00085 Thioredoxin ABE28_021790 PF01751 Toprim domain ABE28_021795 PF01597 Glycine cleavage H-protein ABE28_021800 PF03960 ArsC family ABE28_021805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_021805 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_021805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_021810 PF00108 Thiolase, N-terminal domain ABE28_021810 PF02803 Thiolase, C-terminal domain ABE28_021815 PF00378 Enoyl-CoA hydratase/isomerase ABE28_021815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABE28_021815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABE28_021820 PF14115 YuzL-like protein ABE28_021825 PF01619 Proline dehydrogenase ABE28_021835 PF07875 Coat F domain ABE28_021845 PF01098 Cell cycle protein ABE28_021850 PF00950 ABC 3 transport family ABE28_021855 PF00950 ABC 3 transport family ABE28_021860 PF00005 ABC transporter ABE28_021865 PF01297 Zinc-uptake complex component A periplasmic ABE28_021870 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ABE28_021870 PF00356 Bacterial regulatory proteins, lacI family ABE28_021875 PF00324 Amino acid permease ABE28_021885 PF05504 Spore germination B3/ GerAC like, C-terminal ABE28_021890 PF03845 Spore germination protein ABE28_021895 PF03323 Bacillus/Clostridium GerA spore germination protein ABE28_021925 PF03737 Aldolase/RraA ABE28_021930 PF00884 Sulfatase ABE28_021935 PF01497 Periplasmic binding protein ABE28_021940 PF00005 ABC transporter ABE28_021945 PF01032 FecCD transport family ABE28_021950 PF01032 FecCD transport family ABE28_021965 PF13249 Squalene-hopene cyclase N-terminal domain ABE28_021965 PF13243 Squalene-hopene cyclase C-terminal domain ABE28_021990 PF00512 His Kinase A (phospho-acceptor) domain ABE28_021990 PF00672 HAMP domain ABE28_021990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_021995 PF00486 Transcriptional regulatory protein, C terminal ABE28_021995 PF00072 Response regulator receiver domain ABE28_022000 PF01625 Peptide methionine sulfoxide reductase ABE28_022005 PF00072 Response regulator receiver domain ABE28_022005 PF00196 Bacterial regulatory proteins, luxR family ABE28_022010 PF07730 Histidine kinase ABE28_022020 PF03466 LysR substrate binding domain ABE28_022020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_022025 PF10057 Uncharacterized conserved protein (DUF2294) ABE28_022030 PF01568 Molydopterin dinucleotide binding domain ABE28_022030 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABE28_022030 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABE28_022030 PF00037 4Fe-4S binding domain ABE28_022030 PF00384 Molybdopterin oxidoreductase ABE28_022035 PF07849 Protein of unknown function (DUF1641) ABE28_022045 PF00890 FAD binding domain ABE28_022050 PF01061 ABC-2 type transporter ABE28_022055 PF00005 ABC transporter ABE28_022055 PF13732 Domain of unknown function (DUF4162) ABE28_022075 PF01668 SmpB protein ABE28_022080 PF17876 Cold shock domain ABE28_022080 PF00773 RNB domain ABE28_022080 PF00575 S1 RNA binding domain ABE28_022080 PF08206 Ribonuclease B OB domain ABE28_022085 PF12146 Serine aminopeptidase, S33 ABE28_022090 PF03840 Preprotein translocase SecG subunit ABE28_022100 PF02557 D-alanyl-D-alanine carboxypeptidase ABE28_022125 PF03952 Enolase, N-terminal domain ABE28_022125 PF00113 Enolase, C-terminal TIM barrel domain ABE28_022130 PF01676 Metalloenzyme superfamily ABE28_022130 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABE28_022135 PF00121 Triosephosphate isomerase ABE28_022140 PF00162 Phosphoglycerate kinase ABE28_022145 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABE28_022145 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABE28_022150 PF04198 Putative sugar-binding domain ABE28_022160 PF04552 Sigma-54, DNA binding domain ABE28_022160 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABE28_022160 PF04963 Sigma-54 factor, core binding domain ABE28_022170 PF00574 Clp protease ABE28_022175 PF00381 PTS HPr component phosphorylation site ABE28_022180 PF02650 WhiA C-terminal HTH domain ABE28_022180 PF10298 WhiA N-terminal LAGLIDADG-like domain ABE28_022180 PF14527 WhiA LAGLIDADG-like domain ABE28_022185 PF01933 Uncharacterised protein family UPF0052 ABE28_022190 PF03668 P-loop ATPase protein family ABE28_022195 PF00293 NUDIX domain ABE28_022200 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_022210 PF00171 Aldehyde dehydrogenase family ABE28_022215 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ABE28_022215 PF01502 Phosphoribosyl-AMP cyclohydrolase ABE28_022220 PF00977 Histidine biosynthesis protein ABE28_022225 PF00977 Histidine biosynthesis protein ABE28_022230 PF00117 Glutamine amidotransferase class-I ABE28_022235 PF00475 Imidazoleglycerol-phosphate dehydratase ABE28_022240 PF00815 Histidinol dehydrogenase ABE28_022245 PF01634 ATP phosphoribosyltransferase ABE28_022250 PF13393 Histidyl-tRNA synthetase ABE28_022260 PF04203 Sortase domain ABE28_022265 PF14602 Hexapeptide repeat of succinyl-transferase ABE28_022270 PF13419 Haloacid dehalogenase-like hydrolase ABE28_022275 PF07670 Nucleoside recognition ABE28_022280 PF01790 Prolipoprotein diacylglyceryl transferase ABE28_022285 PF07475 HPr Serine kinase C-terminal domain ABE28_022285 PF02603 HPr Serine kinase N terminus ABE28_022290 PF08818 Domain of unknown function (DU1801) ABE28_022295 PF13349 Putative adhesin ABE28_022300 PF17760 UvrA interaction domain ABE28_022300 PF00005 ABC transporter ABE28_022300 PF17755 UvrA DNA-binding domain ABE28_022305 PF17757 UvrB interaction domain ABE28_022305 PF12344 Ultra-violet resistance protein B ABE28_022305 PF02151 UvrB/uvrC motif ABE28_022305 PF04851 Type III restriction enzyme, res subunit ABE28_022305 PF00271 Helicase conserved C-terminal domain ABE28_022310 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) ABE28_022315 PF00199 Catalase ABE28_022315 PF06628 Catalase-related immune-responsive ABE28_022320 PF03176 MMPL family ABE28_022325 PF04264 YceI-like domain ABE28_022330 PF01032 FecCD transport family ABE28_022335 PF01032 FecCD transport family ABE28_022340 PF01497 Periplasmic binding protein ABE28_022345 PF17820 PDZ domain ABE28_022350 PF01471 Putative peptidoglycan binding domain ABE28_022350 PF03572 Peptidase family S41 ABE28_022350 PF17820 PDZ domain ABE28_022355 PF00877 NlpC/P60 family ABE28_022360 PF18075 FtsX extracellular domain ABE28_022360 PF02687 FtsX-like permease family ABE28_022365 PF00005 ABC transporter ABE28_022375 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ABE28_022375 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ABE28_022380 PF03462 PCRF domain ABE28_022380 PF00472 RF-1 domain ABE28_022385 PF02810 SEC-C motif ABE28_022385 PF01043 SecA preprotein cross-linking domain ABE28_022385 PF07516 SecA Wing and Scaffold domain ABE28_022385 PF07517 SecA DEAD-like domain ABE28_022390 PF08671 Anti-repressor SinI ABE28_022390 PF01381 Helix-turn-helix ABE28_022400 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABE28_022400 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ABE28_022410 PF02561 Flagellar protein FliS ABE28_022415 PF07195 Flagellar hook-associated protein 2 C-terminus ABE28_022415 PF02465 Flagellar hook-associated protein 2 N-terminus ABE28_022415 PF07196 Flagellin hook IN motif ABE28_022420 PF03646 FlaG protein ABE28_022430 PF00669 Bacterial flagellin N-terminal helical region ABE28_022430 PF00700 Bacterial flagellin C-terminal helical region ABE28_022435 PF02599 Global regulator protein family ABE28_022440 PF02623 FliW protein ABE28_022450 PF00700 Bacterial flagellin C-terminal helical region ABE28_022450 PF00669 Bacterial flagellin N-terminal helical region ABE28_022455 PF00460 Flagella basal body rod protein ABE28_022455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABE28_022465 PF04316 Anti-sigma-28 factor, FlgM ABE28_022475 PF00156 Phosphoribosyl transferase domain ABE28_022485 PF02645 Uncharacterised protein, DegV family COG1307 ABE28_022490 PF00196 Bacterial regulatory proteins, luxR family ABE28_022490 PF00072 Response regulator receiver domain ABE28_022495 PF07730 Histidine kinase ABE28_022495 PF05384 Sensor protein DegS ABE28_022495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_022500 PF01205 Uncharacterized protein family UPF0029 ABE28_022500 PF09186 Domain of unknown function (DUF1949) ABE28_022505 PF03816 Cell envelope-related transcriptional attenuator domain ABE28_022510 PF00953 Glycosyl transferase family 4 ABE28_022515 PF13439 Glycosyltransferase Family 4 ABE28_022515 PF00534 Glycosyl transferases group 1 ABE28_022520 PF03808 Glycosyl transferase WecB/TagA/CpsF family ABE28_022530 PF03023 Lipid II flippase MurJ ABE28_022535 PF00534 Glycosyl transferases group 1 ABE28_022535 PF13579 Glycosyl transferase 4-like domain ABE28_022540 PF08239 Bacterial SH3 domain ABE28_022540 PF00005 ABC transporter ABE28_022545 PF01061 ABC-2 type transporter ABE28_022550 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ABE28_022555 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ABE28_022560 PF01467 Cytidylyltransferase-like ABE28_022565 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ABE28_022570 PF00877 NlpC/P60 family ABE28_022570 PF01476 LysM domain ABE28_022580 PF00884 Sulfatase ABE28_022590 PF07516 SecA Wing and Scaffold domain ABE28_022590 PF01043 SecA preprotein cross-linking domain ABE28_022590 PF07517 SecA DEAD-like domain ABE28_022600 PF00245 Alkaline phosphatase ABE28_022605 PF08486 Stage II sporulation protein ABE28_022605 PF04122 Putative cell wall binding repeat 2 ABE28_022610 PF00905 Penicillin binding protein transpeptidase domain ABE28_022610 PF05223 NTF2-like N-terminal transpeptidase domain ABE28_022610 PF03717 Penicillin-binding Protein dimerisation domain ABE28_022630 PF04434 SWIM zinc finger ABE28_022635 PF00176 SNF2 family N-terminal domain ABE28_022635 PF12419 SNF2 Helicase protein ABE28_022635 PF00271 Helicase conserved C-terminal domain ABE28_022640 PF01810 LysE type translocator ABE28_022645 PF00392 Bacterial regulatory proteins, gntR family ABE28_022645 PF00155 Aminotransferase class I and II ABE28_022660 PF06280 Fn3-like domain ABE28_022660 PF00082 Subtilase family ABE28_022660 PF02225 PA domain ABE28_022660 PF00746 LPXTG cell wall anchor motif ABE28_022675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABE28_022680 PF00005 ABC transporter ABE28_022680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_022685 PF00005 ABC transporter ABE28_022685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABE28_022695 PF00436 Single-strand binding protein family ABE28_022710 PF07977 FabA-like domain ABE28_022720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABE28_022720 PF00460 Flagella basal body rod protein ABE28_022725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ABE28_022725 PF00460 Flagella basal body rod protein ABE28_022735 PF12116 Stage III sporulation protein D ABE28_022740 PF01551 Peptidase family M23 ABE28_022750 PF08486 Stage II sporulation protein ABE28_022755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABE28_022765 PF06612 Protein of unknown function (DUF1146) ABE28_022770 PF00361 Proton-conducting membrane transporter ABE28_022775 PF00361 Proton-conducting membrane transporter ABE28_022780 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus ABE28_022780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABE28_022780 PF00361 Proton-conducting membrane transporter ABE28_022785 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABE28_022790 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABE28_022795 PF00037 4Fe-4S binding domain ABE28_022800 PF00146 NADH dehydrogenase ABE28_022805 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABE28_022810 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABE28_022815 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABE28_022820 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABE28_022825 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABE28_022825 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ABE28_022830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABE28_022830 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABE28_022835 PF00231 ATP synthase ABE28_022840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABE28_022840 PF00306 ATP synthase alpha/beta chain, C terminal domain ABE28_022840 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABE28_022845 PF00213 ATP synthase delta (OSCP) subunit ABE28_022850 PF00430 ATP synthase B/B' CF(0) ABE28_022855 PF00137 ATP synthase subunit C ABE28_022860 PF00119 ATP synthase A chain ABE28_022865 PF03899 ATP synthase I chain ABE28_022870 PF00082 Subtilase family ABE28_022870 PF13860 FlgD Ig-like domain ABE28_022870 PF02225 PA domain ABE28_022870 PF05922 Peptidase inhibitor I9 ABE28_022875 PF02350 UDP-N-acetylglucosamine 2-epimerase ABE28_022885 PF00464 Serine hydroxymethyltransferase ABE28_022890 PF04260 Protein of unknown function (DUF436) ABE28_022895 PF02502 Ribose/Galactose Isomerase ABE28_022900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABE28_022900 PF02743 Cache domain ABE28_022900 PF00672 HAMP domain ABE28_022905 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABE28_022910 PF02659 Putative manganese efflux pump ABE28_022915 PF03481 Putative GTP-binding controlling metal-binding ABE28_022915 PF01300 Telomere recombination ABE28_022920 PF09551 Stage II sporulation protein R (spore_II_R) ABE28_022925 PF13847 Methyltransferase domain ABE28_022925 PF17827 PrmC N-terminal domain ABE28_022930 PF03462 PCRF domain ABE28_022930 PF00472 RF-1 domain ABE28_022940 PF00265 Thymidine kinase ABE28_022950 PF07497 Rho termination factor, RNA-binding domain ABE28_022950 PF07498 Rho termination factor, N-terminal domain ABE28_022950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABE28_022955 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ABE28_022960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABE28_022965 PF00923 Transaldolase/Fructose-6-phosphate aldolase ABE28_022970 PF01116 Fructose-bisphosphate aldolase class-II ABE28_022975 PF00072 Response regulator receiver domain ABE28_022980 PF10740 Domain of unknown function (DUF2529) ABE28_022985 PF06418 CTP synthase N-terminus ABE28_022985 PF00117 Glutamine amidotransferase class-I ABE28_022990 PF05066 HB1, ASXL, restriction endonuclease HTH domain ABE28_022995 PF02310 B12 binding domain ABE28_022995 PF01642 Methylmalonyl-CoA mutase ABE28_023005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_023005 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_023005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_023010 PF02770 Acyl-CoA dehydrogenase, middle domain ABE28_023010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABE28_023010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABE28_023015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABE28_023015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABE28_023020 PF02803 Thiolase, C-terminal domain ABE28_023020 PF00108 Thiolase, N-terminal domain ABE28_023025 PF13183 4Fe-4S dicluster domain ABE28_023025 PF02754 Cysteine-rich domain ABE28_023030 PF13091 PLD-like domain ABE28_023035 PF03851 UV-endonuclease UvdE ABE28_023040 PF00750 tRNA synthetases class I (R) ABE28_023040 PF05746 DALR anticodon binding domain ABE28_023040 PF03485 Arginyl tRNA synthetase N terminal domain ABE28_023045 PF09148 Domain of unknown function (DUF1934) ABE28_023050 PF00491 Arginase family ABE28_023055 PF17284 Spermidine synthase tetramerisation domain ABE28_023060 PF00912 Transglycosylase ABE28_023060 PF00905 Penicillin binding protein transpeptidase domain ABE28_023065 PF08741 YwhD family ABE28_023070 PF02163 Peptidase family M50 ABE28_023075 PF01361 Tautomerase enzyme ABE28_023085 PF01966 HD domain ABE28_023090 PF07293 Protein of unknown function (DUF1450) ABE28_023100 PF03099 Biotin/lipoate A/B protein ligase family ABE28_023105 PF01515 Phosphate acetyl/butaryl transferase ABE28_023115 PF09671 Spore coat protein (Spore_GerQ) ABE28_023120 PF04241 Protein of unknown function (DUF423) ABE28_023130 PF03167 Uracil DNA glycosylase superfamily ABE28_023140 PF11181 Heat induced stress protein YflT ABE28_023145 PF00899 ThiF family ABE28_023150 PF02597 ThiS family ABE28_023155 PF02391 MoaE protein ABE28_023160 PF12804 MobA-like NTP transferase domain ABE28_023165 PF08543 Phosphomethylpyrimidine kinase ABE28_023170 PF08830 Protein of unknown function (DUF1806) ABE28_023175 PF02585 GlcNAc-PI de-N-acetylase ABE28_023180 PF07690 Major Facilitator Superfamily ABE28_023185 PF01047 MarR family ABE28_023190 PF07995 Glucose / Sorbosone dehydrogenase ABE28_023205 PF04073 Aminoacyl-tRNA editing domain ABE28_023210 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABE28_023210 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABE28_023225 PF01923 Cobalamin adenosyltransferase ABE28_023240 PF02654 Cobalamin-5-phosphate synthase ABE28_023250 PF00155 Aminotransferase class I and II ABE28_023255 PF03186 CobD/Cbib protein ABE28_023260 PF00005 ABC transporter ABE28_023265 PF01032 FecCD transport family ABE28_023270 PF01497 Periplasmic binding protein ABE28_023275 PF01522 Polysaccharide deacetylase ABE28_023290 PF01751 Toprim domain ABE28_023290 PF01131 DNA topoisomerase ABE28_023300 PF00005 ABC transporter ABE28_023315 PF10920 Protein of unknown function (DUF2705) ABE28_023325 PF00005 ABC transporter ABE28_023325 PF12848 ABC transporter ABE28_023345 PF00271 Helicase conserved C-terminal domain ABE28_023345 PF00270 DEAD/DEAH box helicase ABE28_023350 PF00860 Permease family ABE28_023365 PF00355 Rieske [2Fe-2S] domain ABE28_023365 PF01266 FAD dependent oxidoreductase ABE28_023370 PF09962 Uncharacterized conserved protein (DUF2196) ABE28_023375 PF04402 Protein of unknown function (DUF541) ABE28_023380 PF01842 ACT domain ABE28_023380 PF00551 Formyl transferase ABE28_023400 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABE28_023410 PF00005 ABC transporter ABE28_023415 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ABE28_023415 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABE28_023420 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain ABE28_023420 PF01740 STAS domain ABE28_023425 PF01641 SelR domain ABE28_023425 PF01625 Peptide methionine sulfoxide reductase ABE28_023430 PF07662 Na+ dependent nucleoside transporter C-terminus ABE28_023430 PF01773 Na+ dependent nucleoside transporter N-terminus ABE28_023440 PF00512 His Kinase A (phospho-acceptor) domain ABE28_023440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_023440 PF18719 ArlS sensor domain ABE28_023445 PF00486 Transcriptional regulatory protein, C terminal ABE28_023445 PF00072 Response regulator receiver domain ABE28_023450 PF12704 MacB-like periplasmic core domain ABE28_023450 PF02687 FtsX-like permease family ABE28_023450 PF00005 ABC transporter ABE28_023455 PF00005 ABC transporter ABE28_023470 PF04341 Protein of unknown function, DUF485 ABE28_023475 PF00474 Sodium:solute symporter family ABE28_023500 PF12697 Alpha/beta hydrolase family ABE28_023505 PF00375 Sodium:dicarboxylate symporter family ABE28_023515 PF17785 PUA-like domain ABE28_023515 PF10672 S-adenosylmethionine-dependent methyltransferase ABE28_023525 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABE28_023525 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABE28_023530 PF13407 Periplasmic binding protein domain ABE28_023535 PF02653 Branched-chain amino acid transport system / permease component ABE28_023540 PF00005 ABC transporter ABE28_023545 PF05025 RbsD / FucU transport protein family ABE28_023550 PF00294 pfkB family carbohydrate kinase ABE28_023555 PF00356 Bacterial regulatory proteins, lacI family ABE28_023560 PF04183 IucA / IucC family ABE28_023560 PF06276 Ferric iron reductase FhuF-like transporter ABE28_023565 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABE28_023575 PF06276 Ferric iron reductase FhuF-like transporter ABE28_023575 PF04183 IucA / IucC family ABE28_023580 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABE28_023585 PF00202 Aminotransferase class-III ABE28_023600 PF08757 CotH kinase protein ABE28_023605 PF00128 Alpha amylase, catalytic domain ABE28_023605 PF09154 Domain of unknown function (DUF1939) ABE28_023610 PF07687 Peptidase dimerisation domain ABE28_023610 PF01546 Peptidase family M20/M25/M40 ABE28_023615 PF00199 Catalase ABE28_023615 PF18011 C-terminal domain found in long catalases ABE28_023615 PF06628 Catalase-related immune-responsive ABE28_023620 PF00271 Helicase conserved C-terminal domain ABE28_023620 PF03880 DbpA RNA binding domain ABE28_023620 PF00270 DEAD/DEAH box helicase ABE28_023625 PF03992 Antibiotic biosynthesis monooxygenase ABE28_023630 PF04055 Radical SAM superfamily ABE28_023635 PF02590 Predicted SPOUT methyltransferase ABE28_023640 PF13180 PDZ domain ABE28_023645 PF00753 Metallo-beta-lactamase superfamily ABE28_023650 PF09648 YycH protein ABE28_023660 PF00512 His Kinase A (phospho-acceptor) domain ABE28_023660 PF13426 PAS domain ABE28_023660 PF00672 HAMP domain ABE28_023660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_023665 PF00486 Transcriptional regulatory protein, C terminal ABE28_023665 PF00072 Response regulator receiver domain ABE28_023670 PF01551 Peptidase family M23 ABE28_023670 PF10145 Phage-related minor tail protein ABE28_023670 PF01464 Transglycosylase SLT domain ABE28_023695 PF00709 Adenylosuccinate synthetase ABE28_023700 PF03796 DnaB-like helicase C terminal domain ABE28_023700 PF00772 DnaB-like helicase N terminal domain ABE28_023705 PF01281 Ribosomal protein L9, N-terminal domain ABE28_023705 PF03948 Ribosomal protein L9, C-terminal domain ABE28_023710 PF01368 DHH family ABE28_023710 PF02272 DHHA1 domain ABE28_023720 PF01084 Ribosomal protein S18 ABE28_023725 PF00436 Single-strand binding protein family ABE28_023730 PF01250 Ribosomal protein S6 ABE28_023735 PF01926 50S ribosome-binding GTPase ABE28_023735 PF06071 Protein of unknown function (DUF933) ABE28_023740 PF06107 Bacterial protein of unknown function (DUF951) ABE28_023745 PF00924 Mechanosensitive ion channel ABE28_023750 PF06866 Protein of unknown function (DUF1256) ABE28_023760 PF02195 ParB-like nuclease domain ABE28_023760 PF17762 HTH domain found in ParB protein ABE28_023765 PF13614 AAA domain ABE28_023770 PF17762 HTH domain found in ParB protein ABE28_023770 PF02195 ParB-like nuclease domain ABE28_023775 PF02527 rRNA small subunit methyltransferase G ABE28_023780 PF01134 Glucose inhibited division protein A ABE28_023780 PF13932 GidA associated domain ABE28_023785 PF12631 MnmE helical domain ABE28_023785 PF10396 GTP-binding protein TrmE N-terminus ABE28_023785 PF01926 50S ribosome-binding GTPase ABE28_023790 PF14804 Jag N-terminus ABE28_023790 PF01424 R3H domain ABE28_023795 PF02096 60Kd inner membrane protein ABE28_023800 PF00825 Ribonuclease P ABE28_023805 PF11638 DnaA N-terminal domain ABE28_023805 PF08299 Bacterial dnaA protein helix-turn-helix ABE28_023805 PF00308 Bacterial dnaA protein ABE28_023810 PF02768 DNA polymerase III beta subunit, C-terminal domain ABE28_023810 PF02767 DNA polymerase III beta subunit, central domain ABE28_023810 PF00712 DNA polymerase III beta subunit, N-terminal domain ABE28_023820 PF02463 RecF/RecN/SMC N terminal domain ABE28_023825 PF04025 Domain of unknown function (DUF370) ABE28_023830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABE28_023830 PF00986 DNA gyrase B subunit, carboxyl terminus ABE28_023830 PF00204 DNA gyrase B ABE28_023830 PF01751 Toprim domain ABE28_023835 PF03989 DNA gyrase C-terminal domain, beta-propeller ABE28_023835 PF00521 DNA gyrase/topoisomerase IV, subunit A ABE28_023840 PF01966 HD domain ABE28_023865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABE28_023865 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABE28_023890 PF00106 short chain dehydrogenase ABE28_023905 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ABE28_023910 PF07690 Major Facilitator Superfamily ABE28_023915 PF00232 Glycosyl hydrolase family 1 ABE28_023920 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ABE28_023920 PF00367 phosphotransferase system, EIIB ABE28_023920 PF02378 Phosphotransferase system, EIIC ABE28_023925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABE28_023925 PF03466 LysR substrate binding domain ABE28_023930 PF01145 SPFH domain / Band 7 family ABE28_023930 PF15975 Flotillin ABE28_023940 PF02632 BioY family ABE28_023950 PF03006 Haemolysin-III related ABE28_023955 PF01022 Bacterial regulatory protein, arsR family ABE28_023970 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABE28_023970 PF00005 ABC transporter ABE28_023990 PF04229 GrpB protein ABE28_023990 PF13673 Acetyltransferase (GNAT) domain ABE28_024010 PF00291 Pyridoxal-phosphate dependent enzyme ABE28_024015 PF01381 Helix-turn-helix ABE28_024015 PF07883 Cupin domain ABE28_024020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABE28_024020 PF12833 Helix-turn-helix domain ABE28_024020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABE28_024020 PF02805 Metal binding domain of Ada ABE28_024035 PF01209 ubiE/COQ5 methyltransferase family ABE28_024050 PF05139 Erythromycin esterase ABE28_024065 PF00958 GMP synthase C terminal domain ABE28_024065 PF03352 Methyladenine glycosylase ABE28_024065 PF00117 Glutamine amidotransferase class-I ABE28_024065 PF13302 Acetyltransferase (GNAT) domain ABE28_024065 PF13673 Acetyltransferase (GNAT) domain ABE28_024110 PF07690 Major Facilitator Superfamily ABE28_024130 PF01638 HxlR-like helix-turn-helix ABE28_024140 PF03358 NADPH-dependent FMN reductase ABE28_024150 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ABE28_024165 PF01820 D-ala D-ala ligase N-terminus ABE28_024165 PF07478 D-ala D-ala ligase C-terminus ABE28_024170 PF03848 Tellurite resistance protein TehB ABE28_024195 PF07690 Major Facilitator Superfamily ABE28_024205 PF10898 Protein of unknown function (DUF2716) ABE28_024210 PF05163 DinB family ABE28_024240 PF17827 PrmC N-terminal domain ABE28_024240 PF05175 Methyltransferase small domain