locus-tag	class	description
ABE28_000020	COG0517	IMP dehydrogenase activity
ABE28_000020	COG0516	GMP reductase activity
ABE28_000040	COG1428	Deoxynucleoside kinase
ABE28_000045	COG1428	Deoxynucleoside kinase
ABE28_000050	COG1335	isochorismatase
ABE28_000055	COG0590	tRNA wobble adenosine to inosine editing
ABE28_000065	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ABE28_000070	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
ABE28_000075	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ABE28_000110	COG1982	Orn Lys Arg decarboxylase major
ABE28_000115	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
ABE28_000120	COG3870	Protein conserved in bacteria
ABE28_000125	COG1728	Protein conserved in bacteria
ABE28_000130	COG0470	DNA polymerase III
ABE28_000135	COG1774	PSP1 C-terminal conserved region
ABE28_000140	COG4467	Involved in initiation control of chromosome replication
ABE28_000145	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
ABE28_000155	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
ABE28_000160	COG2002	toxin-antitoxin pair type II binding
ABE28_000170	COG0084	hydrolase, TatD family'
ABE28_000175	COG3584	3D domain protein
ABE28_000175	COG3583	domain protein
ABE28_000195	COG4466	Protein conserved in bacteria
ABE28_000210	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ABE28_000215	COG0251	oxidation-reduction process
ABE28_000220	COG2088	sporulation resulting in formation of a cellular spore
ABE28_000225	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
ABE28_000230	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABE28_000240	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABE28_000245	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABE28_000250	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABE28_000255	COG1116	anion transmembrane transporter activity
ABE28_000260	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
ABE28_000275	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ABE28_000280	COG2002	toxin-antitoxin pair type II binding
ABE28_000285	COG2244	polysaccharide biosynthetic process
ABE28_000290	COG3956	TIGRFAM MazG family protein
ABE28_000295	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ABE28_000310	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ABE28_000315	COG1098	S1 RNA binding domain
ABE28_000330	COG2208	phosphoserine phosphatase activity
ABE28_000335	COG2304	oxidoreductase activity
ABE28_000340	COG0515	serine threonine protein kinase
ABE28_000360	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
ABE28_000365	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ABE28_000370	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABE28_000375	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ABE28_000380	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ABE28_000385	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ABE28_000390	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ABE28_000395	COG1396	sequence-specific DNA binding
ABE28_000400	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABE28_000405	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
ABE28_000430	COG3880	PFAM UvrB UvrC protein
ABE28_000435	COG3869	Catalyzes the specific phosphorylation of arginine residues in
ABE28_000440	COG0542	response to heat
ABE28_000445	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
ABE28_000455	COG4956	integral membrane protein (PIN domain superfamily)
ABE28_000460	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ABE28_000465	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ABE28_000470	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABE28_000475	COG1045	serine acetyltransferase
ABE28_000480	COG0215	cysteine-tRNA ligase activity
ABE28_000490	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABE28_000495	COG3688	RNA-binding protein containing a PIN domain
ABE28_000505	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ABE28_000510	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ABE28_000515	COG0250	Participates in transcription elongation, termination and antitermination
ABE28_000525	COG0081	regulation of translation
ABE28_000540	COG2813	Specifically methylates the guanine in position
ABE28_000545	COG0085	RNA polymerase activity
ABE28_000550	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ABE28_000555	COG1358	cellular component organization or biogenesis
ABE28_000560	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ABE28_000565	COG0049	tRNA binding
ABE28_000575	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ABE28_000580	COG0051	transcription antitermination factor activity, RNA binding
ABE28_000585	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
ABE28_000590	COG0088	Forms part of the polypeptide exit tunnel
ABE28_000600	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
ABE28_000605	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ABE28_000610	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
ABE28_000615	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
ABE28_000620	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ABE28_000625	COG0255	Belongs to the universal ribosomal protein uL29 family
ABE28_000630	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ABE28_000635	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
ABE28_000640	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ABE28_000650	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ABE28_000655	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
ABE28_000660	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
ABE28_000665	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ABE28_000670	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ABE28_000675	COG1841	ribosomal large subunit assembly
ABE28_000680	COG0200	Binds to the 23S rRNA
ABE28_000685	COG0201	protein transport
ABE28_000690	COG0563	adenylate kinase activity
ABE28_000695	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ABE28_000700	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ABE28_000705	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ABE28_000710	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
ABE28_000715	COG0202	RNA polymerase activity
ABE28_000720	COG0203	ribosomal protein L17
ABE28_000725	COG1122	ATPase activity
ABE28_000730	COG1122	ATPase activity
ABE28_000740	COG0101	tRNA pseudouridine synthase activity
ABE28_000750	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ABE28_000755	COG2814	Major facilitator Superfamily
ABE28_000775	COG0860	N-Acetylmuramoyl-L-alanine amidase
ABE28_000780	COG0489	protein tyrosine kinase activity
ABE28_000790	COG2194	sulfuric ester hydrolase activity
ABE28_000795	COG0726	polysaccharide deacetylase
ABE28_000875	COG1595	DNA-templated transcription, initiation
ABE28_000880	COG5662	AntiSigma factor
ABE28_000885	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
ABE28_000890	COG4856	YbbR-like protein
ABE28_000895	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABE28_000900	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ABE28_000930	COG3850	Histidine kinase
ABE28_000930	COG5002	protein histidine kinase activity
ABE28_000940	COG1132	(ABC) transporter
ABE28_000945	COG0372	Belongs to the citrate synthase family
ABE28_000950	COG2079	MmgE PrpD family protein
ABE28_000955	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
ABE28_000965	COG0840	transmembrane signaling receptor activity
ABE28_000970	COG1278	Cold shock
ABE28_000985	COG1595	DNA-templated transcription, initiation
ABE28_000995	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ABE28_001005	COG2801	Transposase and inactivated derivatives
ABE28_001010	COG0493	'glutamate synthase
ABE28_001015	COG0167	dihydroorotate dehydrogenase activity
ABE28_001035	COG3835	regulator
ABE28_001040	COG1597	lipid kinase activity
ABE28_001045	COG0025	NhaP-type Na H and K H
ABE28_001060	COG3842	ATPase activity
ABE28_001065	COG1176	ABC-type spermidine putrescine transport system, permease component I
ABE28_001075	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
ABE28_001080	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABE28_001095	COG1033	growth of symbiont in host cell
ABE28_001095	COG2409	Drug exporters of the RND superfamily
ABE28_001100	COG4821	SIS domain
ABE28_001110	COG0363	glucosamine-6-phosphate deaminase activity
ABE28_001115	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ABE28_001120	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_001120	COG1263	PTS System
ABE28_001120	COG2190	(PTS) system
ABE28_001125	COG1120	ATPase activity
ABE28_001130	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_001135	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_001140	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_001145	COG2819	hydrolase of the alpha beta superfamily
ABE28_001150	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_001155	COG1169	isochorismate synthase
ABE28_001160	COG1021	2,3-dihydroxybenzoate-AMP ligase
ABE28_001165	COG3433	isochorismatase activity
ABE28_001165	COG1535	isochorismatase
ABE28_001170	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABE28_001175	COG3251	PFAM MbtH domain protein
ABE28_001180	COG0477	Major facilitator Superfamily
ABE28_001190	COG2814	Major facilitator Superfamily
ABE28_001200	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABE28_001215	COG2814	Major facilitator Superfamily
ABE28_001220	COG1846	Transcriptional regulator
ABE28_001225	COG2822	iron ion transport
ABE28_001230	COG2837	iron assimilation
ABE28_001235	COG0672	)-iron permease
ABE28_001240	COG0789	Transcriptional regulator
ABE28_001245	COG1253	flavin adenine dinucleotide binding
ABE28_001255	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ABE28_001260	COG2208	phosphoserine phosphatase activity
ABE28_001300	COG4974	Belongs to the 'phage' integrase family
ABE28_001305	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABE28_001310	COG1309	transcriptional regulator
ABE28_001315	COG1597	lipid kinase activity
ABE28_001345	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ABE28_001355	COG0513	Belongs to the DEAD box helicase family
ABE28_001360	COG3402	PFAM membrane-flanked domain
ABE28_001365	COG3428	Bacterial PH domain
ABE28_001370	COG0705	Rhomboid family
ABE28_001375	COG0736	holo-[acyl-carrier-protein] synthase activity
ABE28_001380	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ABE28_001390	COG0864	Transcriptional regulator
ABE28_001395	COG2337	Toxic component of a toxin-antitoxin (TA) module
ABE28_001400	COG1366	Belongs to the anti-sigma-factor antagonist family
ABE28_001405	COG1366	Belongs to the anti-sigma-factor antagonist family
ABE28_001410	COG2172	sigma factor antagonist activity
ABE28_001415	COG2208	phosphoserine phosphatase activity
ABE28_001420	COG1366	Belongs to the anti-sigma-factor antagonist family
ABE28_001425	COG2172	sigma factor antagonist activity
ABE28_001430	COG1191	sigma factor activity
ABE28_001435	COG2208	phosphoserine phosphatase activity
ABE28_001440	COG2183	response to ionizing radiation
ABE28_001445	COG3091	SprT-like family
ABE28_001525	COG0802	atpase or kinase
ABE28_001530	COG1214	PFAM Peptidase M22, glycoprotease
ABE28_001535	COG0456	acetyltransferase
ABE28_001545	COG0488	(ABC) transporter
ABE28_001550	COG0315	cyclic pyranopterin monophosphate synthase activity
ABE28_001555	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
ABE28_001565	COG1266	CAAX protease self-immunity
ABE28_001600	COG4948	Mandelate Racemase Muconate Lactonizing
ABE28_001615	COG0693	protein deglycase activity
ABE28_001640	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ABE28_001645	COG3395	kinase activity
ABE28_001650	COG1349	DNA-binding transcription factor activity
ABE28_001655	COG1802	Transcriptional regulator
ABE28_001660	COG1070	Carbohydrate kinase
ABE28_001670	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
ABE28_001680	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ABE28_001685	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_001690	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_001695	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_001705	COG2986	histidine ammonia-lyase
ABE28_001710	COG0833	amino acid
ABE28_001720	COG0517	IMP dehydrogenase activity
ABE28_001720	COG4175	Glycine betaine
ABE28_001725	COG2113	Glycine betaine
ABE28_001740	COG4842	Belongs to the WXG100 family
ABE28_001750	COG4499	WXG100 protein secretion system (Wss), protein YukC
ABE28_001755	COG1674	ftsk spoiiie
ABE28_001760	COG1511	domain protein
ABE28_001770	COG3328	transposase activity
ABE28_001775	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_001785	COG0714	Associated with various cellular activities
ABE28_001790	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
ABE28_001795	COG1305	Transglutaminase-like
ABE28_001800	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABE28_001800	COG0519	Catalyzes the synthesis of GMP from XMP
ABE28_001805	COG2252	PERMEase
ABE28_001810	COG3711	transcriptional antiterminator
ABE28_001815	COG1263	PTS System
ABE28_001815	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_001815	COG2190	(PTS) system
ABE28_001835	COG2814	Major facilitator Superfamily
ABE28_001845	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
ABE28_001850	COG2814	Major facilitator Superfamily
ABE28_001860	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ABE28_001885	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
ABE28_001890	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ABE28_001895	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ABE28_001905	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ABE28_001910	COG0047	phosphoribosylformylglycinamidine synthase activity
ABE28_001920	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
ABE28_001930	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ABE28_001940	COG0151	Belongs to the GarS family
ABE28_001955	COG1470	cell adhesion involved in biofilm formation
ABE28_001960	COG4496	protein, YerC YecD
ABE28_001965	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
ABE28_001970	COG0210	DNA helicase
ABE28_001975	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ABE28_001980	COG4851	CamS sex pheromone cAM373 precursor
ABE28_001985	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABE28_001990	COG0154	amidase activity
ABE28_001995	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABE28_002000	COG1595	DNA-templated transcription, initiation
ABE28_002020	COG1597	lipid kinase activity
ABE28_002025	COG0454	-acetyltransferase
ABE28_002035	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ABE28_002040	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_002045	COG2323	membrane
ABE28_002055	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ABE28_002085	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
ABE28_002090	COG3853	Toxic anion resistance protein (TelA)
ABE28_002095	COG0778	Nitroreductase
ABE28_002100	COG0653	protein targeting
ABE28_002105	COG1404	Belongs to the peptidase S8 family
ABE28_002110	COG4549	nuclear export factor GLE1
ABE28_002115	COG1276	copper resistance
ABE28_002115	COG2372	response to copper ion
ABE28_002125	COG5002	protein histidine kinase activity
ABE28_002130	COG0398	Pfam SNARE associated Golgi protein
ABE28_002135	COG4708	membrane
ABE28_002140	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ABE28_002155	COG2234	aminopeptidase activity
ABE28_002170	COG5444	nuclease activity
ABE28_002185	COG2733	membrane
ABE28_002190	COG0385	Bile acid
ABE28_002195	COG0745	RESPONSE REGULATOR receiver
ABE28_002205	COG0577	efflux transmembrane transporter activity
ABE28_002210	COG1136	(ABC) transporter
ABE28_002215	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_002240	COG1609	Transcriptional regulator
ABE28_002250	COG0673	inositol 2-dehydrogenase activity
ABE28_002255	COG0673	inositol 2-dehydrogenase activity
ABE28_002265	COG1187	pseudouridine synthase activity
ABE28_002270	COG0667	Aldo Keto reductase
ABE28_002285	COG1129	ABC transporter
ABE28_002290	COG1172	Belongs to the binding-protein-dependent transport system permease family
ABE28_002305	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABE28_002315	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ABE28_002320	COG1845	cytochrome c oxidase, subunit III
ABE28_002325	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ABE28_002340	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
ABE28_002345	COG0527	aspartate kinase activity
ABE28_002350	COG4585	Histidine kinase
ABE28_002355	COG2197	response regulator
ABE28_002360	COG1131	(ABC) transporter
ABE28_002365	COG0842	Transport permease protein
ABE28_002365	COG1511	domain protein
ABE28_002370	COG0842	Transport permease protein
ABE28_002375	COG0778	Nitroreductase
ABE28_002380	COG1132	(ABC) transporter
ABE28_002385	COG1132	(ABC) transporter
ABE28_002390	COG1309	transcriptional regulator
ABE28_002395	COG2814	Major facilitator Superfamily
ABE28_002405	COG1966	Carbon starvation protein
ABE28_002415	COG0004	ammonium transporteR
ABE28_002420	COG0347	Belongs to the P(II) protein family
ABE28_002430	COG3279	Response regulator of the LytR AlgR family
ABE28_002435	COG0427	acetyl-CoA hydrolase
ABE28_002440	COG0628	permease
ABE28_002445	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_002450	COG1301	dicarboxylic acid transport
ABE28_002455	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ABE28_002460	COG3584	3D domain protein
ABE28_002460	COG1388	LysM domain
ABE28_002465	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABE28_002470	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
ABE28_002475	COG0840	transmembrane signaling receptor activity
ABE28_002490	COG2027	D-alanyl-D-alanine carboxypeptidase
ABE28_002495	COG0546	phosphoglycolate phosphatase activity
ABE28_002510	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
ABE28_002520	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_002530	COG0243	molybdopterin cofactor binding
ABE28_002535	COG4191	Histidine kinase
ABE28_002540	COG0513	Belongs to the DEAD box helicase family
ABE28_002545	COG2801	Transposase and inactivated derivatives
ABE28_002555	COG1846	Transcriptional regulator
ABE28_002560	COG2153	protein acetylation
ABE28_002565	COG2364	Membrane
ABE28_002570	COG0626	cystathionine gamma-synthase activity
ABE28_002580	COG0307	riboflavin synthase, alpha
ABE28_002595	COG2404	hydrolase activity, acting on ester bonds
ABE28_002600	COG1295	ribonuclease BN
ABE28_002615	COG1562	ergosterol biosynthetic process
ABE28_002650	COG0475	glutathione-regulated potassium exporter activity
ABE28_002655	COG0490	domain, Protein
ABE28_002660	COG0582	viral genome integration into host DNA
ABE28_002665	COG1077	Cell shape determining protein MreB Mrl
ABE28_002670	COG3180	Ammonia monooxygenase
ABE28_002675	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
ABE28_002680	COG1360	Flagellar Motor Protein
ABE28_002690	COG0693	protein deglycase activity
ABE28_002695	COG0024	Methionine aminopeptidase
ABE28_002700	COG1763	Mo-molybdopterin cofactor biosynthetic process
ABE28_002705	COG0303	'Molybdopterin
ABE28_002710	COG4840	Belongs to the UPF0435 family
ABE28_002720	COG1295	ribonuclease BN
ABE28_002725	COG2217	Heavy metal translocating P-type atpase
ABE28_002730	COG0477	Major facilitator Superfamily
ABE28_002735	COG0387	Pfam Sodium calcium exchanger
ABE28_002745	COG0535	radical SAM domain protein
ABE28_002775	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ABE28_002780	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ABE28_002785	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABE28_002790	COG4807	Protein conserved in bacteria
ABE28_002795	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABE28_002805	COG1288	antiporter activity
ABE28_002810	COG1473	amidohydrolase
ABE28_002815	COG0840	transmembrane signaling receptor activity
ABE28_002825	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABE28_002830	COG0765	amino acid transport
ABE28_002845	COG1940	carbohydrate kinase activity
ABE28_002850	COG1840	ABC-type Fe3 transport system, periplasmic component
ABE28_002855	COG3842	ATPase activity
ABE28_002865	COG0165	Argininosuccinate lyase
ABE28_002870	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABE28_002880	COG1113	amino acid transport
ABE28_002885	COG1113	amino acid transport
ABE28_002890	COG0489	protein tyrosine kinase activity
ABE28_002895	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
ABE28_002910	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ABE28_002915	COG0303	'Molybdopterin
ABE28_002920	COG0314	molybdopterin synthase activity
ABE28_002925	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ABE28_002930	COG3383	formate dehydrogenase (NAD+) activity
ABE28_002935	COG2427	Protein of unknown function (DUF1641)
ABE28_002940	COG3223	Belongs to the PsiE family
ABE28_002945	COG5609	conserved protein (DUF2294)
ABE28_002955	COG4149	molybdate abc transporter
ABE28_002965	COG3383	formate dehydrogenase (NAD+) activity
ABE28_002980	COG0583	DNA-binding transcription factor activity
ABE28_002985	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABE28_002990	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABE28_002995	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ABE28_003005	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABE28_003010	COG0765	amino acid transport
ABE28_003015	COG0765	amino acid transport
ABE28_003020	COG1126	abc transporter atp-binding protein
ABE28_003030	COG1473	amidohydrolase
ABE28_003035	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_003050	COG2271	Major facilitator Superfamily
ABE28_003055	COG0156	8-amino-7-oxononanoate synthase activity
ABE28_003060	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABE28_003065	COG1113	amino acid transport
ABE28_003115	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ABE28_003125	COG0305	Participates in initiation and elongation during chromosome replication
ABE28_003195	COG0740	serine-type endopeptidase activity
ABE28_003235	COG5412	phage tail tape measure protein
ABE28_003235	COG3953	SLT domain
ABE28_003330	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_003350	COG1136	(ABC) transporter
ABE28_003355	COG0577	efflux transmembrane transporter activity
ABE28_003365	COG2205	protein histidine kinase activity
ABE28_003370	COG0745	RESPONSE REGULATOR receiver
ABE28_003375	COG1126	abc transporter atp-binding protein
ABE28_003380	COG0765	amino acid transport
ABE28_003385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABE28_003415	COG2508	Transcriptional regulator
ABE28_003420	COG2508	Transcriptional regulator
ABE28_003425	COG3195	allantoin biosynthetic process
ABE28_003425	COG3648	Uricase
ABE28_003430	COG3648	Uricase
ABE28_003430	COG3195	allantoin biosynthetic process
ABE28_003435	COG2351	hydroxyisourate hydrolase activity
ABE28_003440	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
ABE28_003460	COG0791	NLP P60 protein
ABE28_003460	COG1388	LysM domain
ABE28_003475	COG1695	Transcriptional regulator
ABE28_003490	COG0385	Bile acid
ABE28_003495	COG2814	Major facilitator Superfamily
ABE28_003520	COG0166	Belongs to the GPI family
ABE28_003525	COG0628	permease
ABE28_003535	COG0765	amino acid transport
ABE28_003540	COG1126	abc transporter atp-binding protein
ABE28_003550	COG0583	DNA-binding transcription factor activity
ABE28_003570	COG1960	acyl-CoA dehydrogenase activity
ABE28_003575	COG0183	Belongs to the thiolase family
ABE28_003595	COG1090	epimerase
ABE28_003620	COG1988	membrane-bound metal-dependent
ABE28_003625	COG1194	a g-specific adenine glycosylase
ABE28_003640	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_003655	COG3557	Belongs to the UPF0374 family
ABE28_003660	COG1132	(ABC) transporter
ABE28_003665	COG0697	spore germination
ABE28_003675	COG0655	NAD(P)H dehydrogenase (quinone) activity
ABE28_003680	COG2814	Major facilitator Superfamily
ABE28_003685	COG1566	PFAM secretion protein HlyD family protein
ABE28_003690	COG1846	Transcriptional regulator
ABE28_003695	COG4129	membrane
ABE28_003700	COG0069	glutamate synthase activity
ABE28_003700	COG0070	glutamate synthase
ABE28_003700	COG0067	glutamate synthase
ABE28_003705	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ABE28_003735	COG0582	viral genome integration into host DNA
ABE28_003755	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABE28_003765	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABE28_003770	COG2205	protein histidine kinase activity
ABE28_003775	COG0584	glycerophosphoryl diester phosphodiesterase
ABE28_003780	COG1063	alcohol dehydrogenase
ABE28_003810	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
ABE28_003820	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ABE28_003855	COG1388	LysM domain
ABE28_003910	COG1904	glucuronate isomerase
ABE28_003915	COG3250	beta-galactosidase activity
ABE28_003930	COG0673	inositol 2-dehydrogenase activity
ABE28_003945	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_003950	COG0697	spore germination
ABE28_003965	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABE28_003970	COG2610	gluconate transmembrane transporter activity
ABE28_003985	COG2329	Antibiotic biosynthesis monooxygenase
ABE28_004005	COG1309	transcriptional regulator
ABE28_004010	COG0477	Major facilitator Superfamily
ABE28_004020	COG1902	pentaerythritol trinitrate reductase activity
ABE28_004055	COG0501	Belongs to the peptidase M48B family
ABE28_004060	COG2259	Doxx family
ABE28_004075	COG0579	oxidoreductase
ABE28_004095	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_004105	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABE28_004110	COG1802	Transcriptional regulator
ABE28_004115	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABE28_004125	COG2267	carboxylic ester hydrolase activity
ABE28_004130	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_004135	COG0431	NADPH-dependent FMN reductase
ABE28_004140	COG0196	riboflavin kinase activity
ABE28_004145	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_004155	COG1535	isochorismatase
ABE28_004155	COG3433	isochorismatase activity
ABE28_004160	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABE28_004165	COG0583	DNA-binding transcription factor activity
ABE28_004170	COG3180	Ammonia monooxygenase
ABE28_004180	COG2851	Citrate transporter
ABE28_004185	COG0583	DNA-binding transcription factor activity
ABE28_004190	COG2828	Protein conserved in bacteria
ABE28_004195	COG0028	Belongs to the TPP enzyme family
ABE28_004200	COG2223	nitrite transmembrane transporter activity
ABE28_004235	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABE28_004240	COG0601	transmembrane transport
ABE28_004255	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABE28_004265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABE28_004275	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ABE28_004285	COG0697	spore germination
ABE28_004310	COG0667	Aldo Keto reductase
ABE28_004315	COG1309	transcriptional regulator
ABE28_004320	COG2351	hydroxyisourate hydrolase activity
ABE28_004325	COG0745	RESPONSE REGULATOR receiver
ABE28_004330	COG5002	protein histidine kinase activity
ABE28_004355	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABE28_004385	COG2723	6-phospho-beta-galactosidase activity
ABE28_004390	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_004390	COG1263	PTS System
ABE28_004390	COG2190	(PTS) system
ABE28_004395	COG3711	transcriptional antiterminator
ABE28_004435	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABE28_004445	COG0124	histidyl-tRNA synthetase
ABE28_004450	COG1960	acyl-CoA dehydrogenase activity
ABE28_004455	COG2084	Dehydrogenase
ABE28_004460	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_004465	COG1024	Enoyl-CoA hydratase
ABE28_004470	COG1024	Enoyl-CoA hydratase
ABE28_004475	COG0346	lactoylglutathione lyase activity
ABE28_004485	COG0791	NLP P60 protein
ABE28_004485	COG3103	Sh3 type 3 domain protein
ABE28_004485	COG1388	LysM domain
ABE28_004490	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABE28_004500	COG0697	spore germination
ABE28_004510	COG3689	TIGRFAM TIGR03943 family protein
ABE28_004515	COG0701	Predicted permease
ABE28_004530	COG2130	NADP-dependent
ABE28_004545	COG3382	B3 4 domain protein
ABE28_004550	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ABE28_004560	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ABE28_004565	COG0778	Nitroreductase
ABE28_004570	COG1120	ATPase activity
ABE28_004575	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_004580	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_004585	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_004590	COG2766	serine protein kinase
ABE28_004630	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ABE28_004640	COG3944	biosynthesis protein
ABE28_004645	COG0489	protein tyrosine kinase activity
ABE28_004685	COG2807	transmembrane transport
ABE28_004690	COG2186	Transcriptional regulator
ABE28_004705	COG0531	amino acid
ABE28_004740	COG3961	Belongs to the TPP enzyme family
ABE28_004760	COG0586	Pfam SNARE associated Golgi protein
ABE28_004765	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
ABE28_004770	COG2094	Belongs to the DNA glycosylase MPG family
ABE28_004775	COG0477	Major facilitator Superfamily
ABE28_004780	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ABE28_004785	COG0277	FAD linked oxidase domain protein
ABE28_004790	COG0686	Belongs to the AlaDH PNT family
ABE28_004795	COG2217	Heavy metal translocating P-type atpase
ABE28_004800	COG2508	Transcriptional regulator
ABE28_004800	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
ABE28_004805	COG0306	phosphate transporter
ABE28_004810	COG1392	Phosphate transport regulator
ABE28_004815	COG0306	phosphate transporter
ABE28_004820	COG0656	L-ascorbic acid biosynthetic process
ABE28_004825	COG2261	transglycosylase associated protein
ABE28_004830	COG0277	FAD linked oxidase domain protein
ABE28_004835	COG0564	pseudouridine synthase activity
ABE28_004845	COG3118	belongs to the thioredoxin family
ABE28_004850	COG3153	acetyltransferase
ABE28_004850	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABE28_004855	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABE28_004880	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ABE28_004890	COG1473	amidohydrolase
ABE28_004900	COG2719	SpoVR family
ABE28_004905	COG2814	Major facilitator Superfamily
ABE28_004910	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABE28_004915	COG3437	response regulator, receiver
ABE28_004915	COG0784	Response regulator, receiver
ABE28_004925	COG0398	Pfam SNARE associated Golgi protein
ABE28_004930	COG0745	RESPONSE REGULATOR receiver
ABE28_004935	COG5002	protein histidine kinase activity
ABE28_004955	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ABE28_004960	COG2059	Chromate
ABE28_004965	COG2059	Chromate
ABE28_004975	COG2271	Major facilitator Superfamily
ABE28_004980	COG0191	fructose-bisphosphate aldolase activity
ABE28_004985	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
ABE28_004990	COG2186	Transcriptional regulator
ABE28_005005	COG1414	Transcriptional regulator
ABE28_005010	COG3959	Transketolase, thiamine diphosphate binding domain
ABE28_005015	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
ABE28_005025	COG3960	tartronate-semialdehyde synthase activity
ABE28_005040	COG2508	Transcriptional regulator
ABE28_005045	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ABE28_005050	COG3257	ureidoglycine aminohydrolase activity
ABE28_005060	COG2233	PERMEase
ABE28_005065	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ABE28_005080	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
ABE28_005090	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
ABE28_005095	COG3396	Phenylacetate-CoA oxygenase
ABE28_005120	COG1024	Enoyl-CoA hydratase
ABE28_005125	COG1024	Enoyl-CoA hydratase
ABE28_005130	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_005135	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABE28_005140	COG0183	Belongs to the thiolase family
ABE28_005145	COG1024	Enoyl-CoA hydratase
ABE28_005150	COG3327	negative regulation of DNA-templated transcription, initiation
ABE28_005165	COG0586	Pfam SNARE associated Golgi protein
ABE28_005180	COG0745	RESPONSE REGULATOR receiver
ABE28_005185	COG5002	protein histidine kinase activity
ABE28_005190	COG1393	Belongs to the ArsC family
ABE28_005195	COG4149	molybdate abc transporter
ABE28_005205	COG1278	Cold shock
ABE28_005210	COG0716	FMN binding
ABE28_005215	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABE28_005220	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABE28_005225	COG1227	inorganic diphosphatase activity
ABE28_005250	COG2814	Major facilitator Superfamily
ABE28_005255	COG2851	Citrate transporter
ABE28_005275	COG0456	acetyltransferase
ABE28_005280	COG0671	phosphoesterase, PA-phosphatase related
ABE28_005285	COG0772	Belongs to the SEDS family
ABE28_005290	COG3339	Conserved Protein
ABE28_005295	COG1316	TRANSCRIPTIONal
ABE28_005320	COG1253	flavin adenine dinucleotide binding
ABE28_005325	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_005335	COG0586	Pfam SNARE associated Golgi protein
ABE28_005340	COG1253	flavin adenine dinucleotide binding
ABE28_005345	COG3852	Histidine kinase
ABE28_005350	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ABE28_005355	COG0589	response to stress
ABE28_005360	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABE28_005370	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ABE28_005395	COG1113	amino acid transport
ABE28_005400	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ABE28_005405	COG1522	sequence-specific DNA binding
ABE28_005415	COG1522	sequence-specific DNA binding
ABE28_005420	COG1595	DNA-templated transcription, initiation
ABE28_005435	COG0393	Putative heavy-metal-binding
ABE28_005440	COG0386	Belongs to the glutathione peroxidase family
ABE28_005445	COG0753	catalase activity
ABE28_005450	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ABE28_005460	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_005475	COG0516	GMP reductase activity
ABE28_005475	COG0517	IMP dehydrogenase activity
ABE28_005495	COG1132	(ABC) transporter
ABE28_005500	COG1132	(ABC) transporter
ABE28_005505	COG0254	rRNA binding
ABE28_005510	COG0626	cystathionine gamma-synthase activity
ABE28_005515	COG0626	cystathionine gamma-synthase activity
ABE28_005520	COG0114	fumarate hydratase activity
ABE28_005530	COG3842	ATPase activity
ABE28_005535	COG2508	Transcriptional regulator
ABE28_005540	COG0371	Dehydrogenase
ABE28_005545	COG1464	Belongs to the NlpA lipoprotein family
ABE28_005550	COG2011	ABC-type metal ion transport system permease component
ABE28_005555	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABE28_005580	COG0189	ligase activity
ABE28_005585	COG0189	ligase activity
ABE28_005590	COG0189	ligase activity
ABE28_005600	COG3679	Belongs to the UPF0342 family
ABE28_005605	COG0561	phosphatase activity
ABE28_005625	COG1834	amidinotransferase
ABE28_005630	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_005635	COG1024	Enoyl-CoA hydratase
ABE28_005645	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ABE28_005650	COG0420	3'-5' exonuclease activity
ABE28_005655	COG4717	serine-type aminopeptidase activity
ABE28_005665	COG1120	ATPase activity
ABE28_005675	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
ABE28_005685	COG0069	glutamate synthase activity
ABE28_005700	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABE28_005725	COG1846	Transcriptional regulator
ABE28_005730	COG4980	gas vesicle protein
ABE28_005750	COG0537	adenosine 5'-monophosphoramidase activity
ABE28_005755	COG1131	(ABC) transporter
ABE28_005760	COG4473	ABC transporter
ABE28_005770	COG1473	amidohydrolase
ABE28_005780	COG2329	Antibiotic biosynthesis monooxygenase
ABE28_005785	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ABE28_005795	COG1309	transcriptional regulator
ABE28_005805	COG1234	tRNA 3'-trailer cleavage
ABE28_005810	COG0095	Lipoate-protein ligase
ABE28_005815	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_005820	COG1418	mRNA catabolic process
ABE28_005825	COG2197	response regulator
ABE28_005830	COG0501	Belongs to the peptidase M48B family
ABE28_005835	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_005845	COG4903	ComK protein
ABE28_005855	COG0398	Pfam SNARE associated Golgi protein
ABE28_005865	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
ABE28_005870	COG1074	ATP-dependent DNA helicase activity
ABE28_005905	COG2271	Major facilitator Superfamily
ABE28_005910	COG2311	Membrane
ABE28_005925	COG0367	asparagine synthase
ABE28_005935	COG2182	Extracellular solute-binding protein
ABE28_005945	COG0366	Alpha amylase catalytic
ABE28_005950	COG1609	Transcriptional regulator
ABE28_005955	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_005960	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_005965	COG1666	GTP binding
ABE28_005970	COG1307	EDD domain protein, DegV family
ABE28_005975	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_005980	COG3729	General stress protein
ABE28_005995	COG0561	phosphatase activity
ABE28_006000	COG1073	alpha beta
ABE28_006005	COG2151	metal-sulfur cluster biosynthetic enzyme
ABE28_006010	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ABE28_006015	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABE28_006020	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
ABE28_006025	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
ABE28_006030	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ABE28_006040	COG0505	Belongs to the CarA family
ABE28_006050	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ABE28_006060	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABE28_006075	COG2267	carboxylic ester hydrolase activity
ABE28_006095	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ABE28_006100	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ABE28_006105	COG5504	Zn-dependent protease
ABE28_006115	COG0180	Tryptophanyl-tRNA synthetase
ABE28_006130	COG0456	acetyltransferase
ABE28_006140	COG1393	Belongs to the ArsC family
ABE28_006145	COG4862	establishment of competence for transformation
ABE28_006150	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABE28_006155	COG4469	Competence protein
ABE28_006160	COG1164	Oligoendopeptidase f
ABE28_006180	COG2346	COG2346, Truncated hemoglobins
ABE28_006185	COG0741	lytic transglycosylase activity
ABE28_006190	COG4116	CYTH
ABE28_006195	COG2357	RelA SpoT domain protein
ABE28_006200	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ABE28_006205	COG0564	pseudouridine synthase activity
ABE28_006210	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ABE28_006215	COG2239	Acts as a magnesium transporter
ABE28_006220	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
ABE28_006225	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_006255	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ABE28_006270	COG0210	DNA helicase
ABE28_006290	COG2153	protein acetylation
ABE28_006295	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
ABE28_006300	COG2382	esterase
ABE28_006305	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ABE28_006325	COG3655	Transcriptional regulator
ABE28_006350	COG0693	protein deglycase activity
ABE28_006360	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
ABE28_006365	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ABE28_006370	COG1960	acyl-CoA dehydrogenase activity
ABE28_006385	COG5337	Spore coat protein CotH
ABE28_006395	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_006400	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ABE28_006405	COG2814	Major facilitator Superfamily
ABE28_006410	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_006415	COG0673	inositol 2-dehydrogenase activity
ABE28_006425	COG1902	pentaerythritol trinitrate reductase activity
ABE28_006430	COG1609	Transcriptional regulator
ABE28_006435	COG0366	Alpha amylase catalytic
ABE28_006440	COG1653	transport
ABE28_006445	COG1175	transmembrane transport
ABE28_006450	COG0395	ABC-type sugar transport system, permease component
ABE28_006455	COG1063	alcohol dehydrogenase
ABE28_006460	COG1082	Xylose isomerase domain protein TIM barrel
ABE28_006465	COG0673	inositol 2-dehydrogenase activity
ABE28_006470	COG1554	hydrolase, family 65, central catalytic
ABE28_006475	COG1929	Belongs to the glycerate kinase type-1 family
ABE28_006480	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ABE28_006485	COG0659	secondary active sulfate transmembrane transporter activity
ABE28_006490	COG0789	Transcriptional regulator
ABE28_006495	COG2272	Belongs to the type-B carboxylesterase lipase family
ABE28_006500	COG1113	amino acid transport
ABE28_006505	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ABE28_006510	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ABE28_006520	COG4208	sulfate ABC transporter
ABE28_006530	COG0791	NLP P60 protein
ABE28_006530	COG3883	PFAM NLP P60 protein
ABE28_006545	COG2017	converts alpha-aldose to the beta-anomer
ABE28_006550	COG0531	amino acid
ABE28_006555	COG5583	Uncharacterized small protein (DUF2292)
ABE28_006560	COG2367	Beta-lactamase
ABE28_006575	COG1278	Cold shock
ABE28_006585	COG2309	aminopeptidase activity
ABE28_006590	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_006595	COG0477	Major facilitator Superfamily
ABE28_006610	COG0351	phosphomethylpyrimidine kinase
ABE28_006610	COG0352	thiamine-phosphate diphosphorylase activity
ABE28_006620	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABE28_006635	COG1247	-acetyltransferase
ABE28_006645	COG1132	(ABC) transporter
ABE28_006650	COG2318	DinB family
ABE28_006655	COG1876	peptidase activity
ABE28_006660	COG1607	acyl-coa hydrolase
ABE28_006665	COG0670	Belongs to the BI1 family
ABE28_006675	COG4608	Belongs to the ABC transporter superfamily
ABE28_006680	COG0601	transmembrane transport
ABE28_006685	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABE28_006700	COG1363	Peptidase, m42
ABE28_006705	COG3871	stress protein (general stress protein 26)
ABE28_006720	COG0706	membrane insertase activity
ABE28_006735	COG0584	glycerophosphoryl diester phosphodiesterase
ABE28_006745	COG1764	response to oxidative stress
ABE28_006750	COG1725	Transcriptional regulator
ABE28_006755	COG1131	(ABC) transporter
ABE28_006770	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
ABE28_006780	COG0772	Belongs to the SEDS family
ABE28_006785	COG3320	Male sterility
ABE28_006785	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABE28_006795	COG0861	Integral membrane protein TerC family
ABE28_006800	COG1191	sigma factor activity
ABE28_006815	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABE28_006820	COG3852	Histidine kinase
ABE28_006825	COG1960	acyl-CoA dehydrogenase activity
ABE28_006830	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_006835	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_006845	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABE28_006850	COG1024	Enoyl-CoA hydratase
ABE28_006865	COG2045	Belongs to the ComB family
ABE28_006870	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_006875	COG1024	Enoyl-CoA hydratase
ABE28_006895	COG3594	Acyltransferase
ABE28_006900	COG5002	protein histidine kinase activity
ABE28_006915	COG2223	nitrite transmembrane transporter activity
ABE28_006920	COG3852	Histidine kinase
ABE28_006925	COG1846	Transcriptional regulator
ABE28_006930	COG1164	Oligoendopeptidase f
ABE28_006935	COG3949	Membrane
ABE28_006945	COG4873	Protein conserved in bacteria
ABE28_006965	COG1525	nuclease
ABE28_006975	COG0390	transport system, permease component
ABE28_006985	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ABE28_006995	COG2084	Dehydrogenase
ABE28_007005	COG0436	Aminotransferase
ABE28_007010	COG0598	Magnesium transport protein CorA
ABE28_007015	COG0835	chemotaxis
ABE28_007015	COG0784	Response regulator, receiver
ABE28_007030	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
ABE28_007035	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
ABE28_007040	COG1408	metallophosphoesterase
ABE28_007045	COG0490	domain, Protein
ABE28_007045	COG0471	metal ion transport
ABE28_007050	COG2200	EAL domain
ABE28_007075	COG4703	Protein of unknown function (DUF1797)
ABE28_007090	COG0517	IMP dehydrogenase activity
ABE28_007095	COG0477	Major facilitator Superfamily
ABE28_007100	COG0583	DNA-binding transcription factor activity
ABE28_007105	COG2171	N-acyltransferase activity
ABE28_007110	COG1473	amidohydrolase
ABE28_007115	COG0569	domain protein
ABE28_007120	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
ABE28_007130	COG0561	phosphatase activity
ABE28_007140	COG0497	DNA recombination
ABE28_007150	COG0022	dehydrogenase e1 component
ABE28_007155	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABE28_007170	COG0726	polysaccharide deacetylase
ABE28_007180	COG1982	Orn Lys Arg decarboxylase major
ABE28_007190	COG4476	Belongs to the UPF0223 family
ABE28_007200	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ABE28_007200	COG0512	Glutamine amidotransferase of anthranilate synthase
ABE28_007230	COG4493	Belongs to the UPF0637 family
ABE28_007240	COG0483	inositol monophosphate 1-phosphatase activity
ABE28_007270	COG4896	Protein conserved in bacteria
ABE28_007280	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ABE28_007285	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ABE28_007290	COG4838	Belongs to the UPF0358 family
ABE28_007295	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
ABE28_007300	COG1612	heme a metabolic process
ABE28_007305	COG0109	protoheme IX farnesyltransferase activity
ABE28_007330	COG3336	cytochrome c oxidase
ABE28_007345	COG2340	Cysteine-rich secretory protein family
ABE28_007370	COG3679	Belongs to the UPF0342 family
ABE28_007380	COG4471	UPF0298 protein
ABE28_007395	COG0742	ribosomal rna small subunit methyltransferase
ABE28_007400	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
ABE28_007405	COG3314	Sporulation integral membrane protein YlbJ
ABE28_007410	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABE28_007415	COG3480	Lon protease (S16) C-terminal proteolytic domain
ABE28_007420	COG2801	Transposase and inactivated derivatives
ABE28_007430	COG1323	Belongs to the UPF0348 family
ABE28_007435	COG1399	metal-binding, possibly nucleic acid-binding protein
ABE28_007445	COG1024	Enoyl-CoA hydratase
ABE28_007455	COG0454	-acetyltransferase
ABE28_007460	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ABE28_007470	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
ABE28_007475	COG2001	Belongs to the MraZ family
ABE28_007485	COG4839	cell division protein FtsL
ABE28_007495	COG0768	penicillin binding
ABE28_007500	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ABE28_007505	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABE28_007510	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
ABE28_007515	COG0772	Belongs to the SEDS family
ABE28_007520	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ABE28_007525	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ABE28_007530	COG0849	cell division
ABE28_007535	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ABE28_007545	COG1191	sigma factor activity
ABE28_007550	COG1191	sigma factor activity
ABE28_007555	COG1873	PFAM PRC-barrel domain
ABE28_007565	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ABE28_007570	COG1799	cell septum assembly
ABE28_007575	COG0762	integral membrane protein
ABE28_007580	COG2302	S4 RNA-binding domain
ABE28_007585	COG3599	regulation of cell shape
ABE28_007595	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
ABE28_007600	COG0564	pseudouridine synthase activity
ABE28_007605	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
ABE28_007615	COG0540	Belongs to the ATCase OTCase family
ABE28_007620	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ABE28_007625	COG0505	Belongs to the CarA family
ABE28_007630	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ABE28_007640	COG0167	dihydroorotate dehydrogenase activity
ABE28_007650	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
ABE28_007660	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ABE28_007665	COG1561	YicC-like family, N-terminal region
ABE28_007675	COG0194	GDP metabolic process
ABE28_007685	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ABE28_007690	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ABE28_007705	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ABE28_007705	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ABE28_007710	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ABE28_007715	COG0631	protein serine/threonine phosphatase activity
ABE28_007720	COG2815	serine threonine protein kinase
ABE28_007720	COG0515	serine threonine protein kinase
ABE28_007725	COG1162	GTPase activity
ABE28_007730	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABE28_007735	COG1564	THIamine pyrophosphokinase
ABE28_007745	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ABE28_007750	COG1302	Protein conserved in bacteria
ABE28_007755	COG1461	Dihydroxyacetone kinase
ABE28_007760	COG1760	l-serine dehydratase
ABE28_007765	COG1760	l-serine dehydratase
ABE28_007770	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ABE28_007775	COG1349	DNA-binding transcription factor activity
ABE28_007785	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ABE28_007790	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_007795	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABE28_007800	COG0571	ribonuclease III activity
ABE28_007805	COG1196	nuclear chromosome segregation
ABE28_007810	COG0552	protein localization to endoplasmic reticulum
ABE28_007825	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ABE28_007830	COG0228	four-way junction DNA binding
ABE28_007835	COG1837	Belongs to the UPF0109 family
ABE28_007845	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ABE28_007850	COG0336	Belongs to the RNA methyltransferase TrmD family
ABE28_007855	COG0335	large ribosomal subunit rRNA binding
ABE28_007870	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ABE28_007880	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABE28_007885	COG0045	succinate-CoA ligase (ADP-forming) activity
ABE28_007890	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ABE28_007895	COG0758	DNA mediated transformation
ABE28_007900	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ABE28_007905	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
ABE28_007910	COG4974	Belongs to the 'phage' integrase family
ABE28_007920	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
ABE28_007925	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
ABE28_007930	COG1815	bacterial-type flagellum-dependent cell motility
ABE28_007935	COG1558	bacterial-type flagellum-dependent cell motility
ABE28_007940	COG1677	Flagellar hook-basal body complex protein FliE
ABE28_007945	COG1766	The M ring may be actively involved in energy transduction
ABE28_007950	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABE28_007960	COG1157	protein secretion by the type III secretion system
ABE28_007965	COG2882	bacterial-type flagellum organization
ABE28_007980	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ABE28_007995	COG1582	Flagellar protein (FlbD)
ABE28_008000	COG1580	Controls the rotational direction of flagella during chemotaxis
ABE28_008005	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABE28_008010	COG1776	CheC inhibitor of MCP methylation
ABE28_008010	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ABE28_008015	COG2201	protein-glutamate methylesterase activity
ABE28_008020	COG3190	flagellar
ABE28_008025	COG1338	Plays a role in the flagellum-specific transport system
ABE28_008030	COG1987	bacterial-type flagellum assembly
ABE28_008035	COG1684	flagellar biosynthetic protein fliR
ABE28_008040	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABE28_008045	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
ABE28_008050	COG1419	protein localization to endoplasmic reticulum
ABE28_008055	COG0455	bacterial-type flagellum organization
ABE28_008060	COG2201	protein-glutamate methylesterase activity
ABE28_008065	COG2198	Histidine kinase
ABE28_008065	COG0643	Histidine kinase
ABE28_008075	COG1776	CheC inhibitor of MCP methylation
ABE28_008080	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
ABE28_008085	COG1191	sigma factor activity
ABE28_008105	COG0528	UMP kinase activity
ABE28_008120	COG4589	Belongs to the CDS family
ABE28_008125	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
ABE28_008130	COG0750	zinc metalloprotease
ABE28_008135	COG0442	prolyl-tRNA aminoacylation
ABE28_008140	COG2176	DNA-directed DNA polymerase activity
ABE28_008145	COG0779	Required for maturation of 30S ribosomal subunits
ABE28_008150	COG0195	Participates in both transcription termination and antitermination
ABE28_008155	COG2740	Nucleic-acid-binding protein implicated in transcription termination
ABE28_008160	COG1358	cellular component organization or biogenesis
ABE28_008165	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
ABE28_008170	COG1550	Protein conserved in bacteria
ABE28_008175	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
ABE28_008180	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ABE28_008185	COG0196	riboflavin kinase activity
ABE28_008195	COG1185	polyribonucleotide nucleotidyltransferase activity
ABE28_008200	COG0726	polysaccharide deacetylase
ABE28_008205	COG0612	Peptidase, M16
ABE28_008210	COG1873	PFAM PRC-barrel domain
ABE28_008215	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ABE28_008220	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ABE28_008225	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ABE28_008230	COG0527	aspartate kinase activity
ABE28_008235	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABE28_008240	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
ABE28_008245	COG0740	serine-type endopeptidase activity
ABE28_008255	COG1674	ftsk spoiiie
ABE28_008255	COG4980	gas vesicle protein
ABE28_008265	COG2188	Transcriptional regulator
ABE28_008290	COG0612	Peptidase, M16
ABE28_008295	COG0612	Peptidase, M16
ABE28_008300	COG0300	oxidoreductase activity
ABE28_008315	COG1426	Protein conserved in bacteria
ABE28_008320	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ABE28_008325	COG1546	Belongs to the CinA family
ABE28_008325	COG1058	Belongs to the CinA family
ABE28_008330	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
ABE28_008340	COG1692	metallophosphoesterase
ABE28_008345	COG2359	stage V sporulation protein S
ABE28_008355	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
ABE28_008355	COG0674	pyruvate-flavodoxin oxidoreductase activity
ABE28_008360	COG1013	pyruvate-flavodoxin oxidoreductase activity
ABE28_008370	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABE28_008375	COG4550	Control of competence regulator ComK, YlbF/YmcA
ABE28_008385	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ABE28_008395	COG1072	(Pantothenic acid kinase))
ABE28_008415	COG1473	amidohydrolase
ABE28_008420	COG1802	Transcriptional regulator
ABE28_008425	COG4948	Mandelate Racemase Muconate Lactonizing
ABE28_008430	COG2271	Major facilitator Superfamily
ABE28_008435	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABE28_008450	COG1959	2 iron, 2 sulfur cluster binding
ABE28_008455	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_008470	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABE28_008485	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABE28_008515	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_008525	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABE28_008535	COG2814	Major facilitator Superfamily
ABE28_008550	COG2271	Major facilitator Superfamily
ABE28_008555	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_008565	COG1473	amidohydrolase
ABE28_008570	COG2860	membrane
ABE28_008585	COG0716	FMN binding
ABE28_008615	COG1297	OPT oligopeptide transporter protein
ABE28_008625	COG3290	protein histidine kinase activity
ABE28_008625	COG3829	transcription factor binding
ABE28_008630	COG1288	antiporter activity
ABE28_008635	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
ABE28_008650	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_008660	COG0367	asparagine synthase
ABE28_008670	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ABE28_008675	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ABE28_008680	COG1447	Phosphotransferase system cellobiose-specific component IIA
ABE28_008685	COG1486	melibiose metabolic process
ABE28_008690	COG3394	polysaccharide catabolic process
ABE28_008695	COG1252	NADH dehydrogenase
ABE28_008715	COG3290	protein histidine kinase activity
ABE28_008720	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ABE28_008725	COG1923	regulation of RNA biosynthetic process
ABE28_008730	COG0464	growth
ABE28_008735	COG2860	membrane
ABE28_008740	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ABE28_008745	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
ABE28_008750	COG0789	Transcriptional regulator
ABE28_008755	COG0174	glutamine synthetase
ABE28_008830	COG3655	Transcriptional regulator
ABE28_008875	COG0629	single-stranded DNA binding
ABE28_009005	COG1705	Flagellar rod assembly protein muramidase FlgJ
ABE28_009005	COG1388	LysM domain
ABE28_009075	COG1876	peptidase activity
ABE28_009125	COG3935	DnaD domain protein
ABE28_009155	COG1595	DNA-templated transcription, initiation
ABE28_009185	COG2801	Transposase and inactivated derivatives
ABE28_009290	COG0658	competence protein
ABE28_009290	COG2333	competence protein COMEC
ABE28_009315	COG0305	Participates in initiation and elongation during chromosome replication
ABE28_009355	COG2801	Transposase and inactivated derivatives
ABE28_009395	COG0011	TIGRFAM Protein of
ABE28_009415	COG3655	Transcriptional regulator
ABE28_009420	COG3739	integral membrane protein
ABE28_009455	COG1473	amidohydrolase
ABE28_009465	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
ABE28_009485	COG2364	Membrane
ABE28_009540	COG0861	Integral membrane protein TerC family
ABE28_009555	COG0823	Involved in the tonB-independent uptake of proteins
ABE28_009560	COG0577	efflux transmembrane transporter activity
ABE28_009565	COG1136	(ABC) transporter
ABE28_009570	COG5002	protein histidine kinase activity
ABE28_009575	COG0745	RESPONSE REGULATOR receiver
ABE28_009595	COG2197	response regulator
ABE28_009635	COG0789	Transcriptional regulator
ABE28_009650	COG0346	lactoylglutathione lyase activity
ABE28_009655	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ABE28_009665	COG2329	Antibiotic biosynthesis monooxygenase
ABE28_009680	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ABE28_009690	COG1309	transcriptional regulator
ABE28_009700	COG0006	proline dipeptidase activity
ABE28_009730	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ABE28_009745	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ABE28_009750	COG1447	Phosphotransferase system cellobiose-specific component IIA
ABE28_009760	COG4493	Belongs to the UPF0637 family
ABE28_009765	COG1959	2 iron, 2 sulfur cluster binding
ABE28_009775	COG0022	dehydrogenase e1 component
ABE28_009780	COG1252	NADH dehydrogenase
ABE28_009790	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
ABE28_009795	COG2910	NAD(P)H-binding
ABE28_009800	COG1733	regulation of RNA biosynthetic process
ABE28_009820	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_009840	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ABE28_009855	COG4335	DNA alkylation repair
ABE28_009860	COG1263	PTS System
ABE28_009860	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_009865	COG0366	Alpha amylase catalytic
ABE28_009870	COG2188	Transcriptional regulator
ABE28_009875	COG2076	Multidrug Resistance protein
ABE28_009880	COG2076	Multidrug Resistance protein
ABE28_009885	COG0592	DNA-directed DNA polymerase activity
ABE28_009900	COG5002	protein histidine kinase activity
ABE28_009905	COG0860	N-Acetylmuramoyl-L-alanine amidase
ABE28_009940	COG1705	Flagellar rod assembly protein muramidase FlgJ
ABE28_009940	COG1388	LysM domain
ABE28_009945	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ABE28_009950	COG1388	LysM domain
ABE28_009955	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
ABE28_009980	COG1714	RDD family
ABE28_009995	COG3118	belongs to the thioredoxin family
ABE28_010000	COG1902	pentaerythritol trinitrate reductase activity
ABE28_010005	COG2259	Doxx family
ABE28_010010	COG0726	polysaccharide deacetylase
ABE28_010025	COG0785	Cytochrome C biogenesis protein
ABE28_010030	COG2201	protein-glutamate methylesterase activity
ABE28_010035	COG4846	Membrane protein involved in cytochrome C biogenesis
ABE28_010040	COG2391	methyltransferase activity
ABE28_010045	COG0425	Belongs to the sulfur carrier protein TusA family
ABE28_010065	COG0419	ATPase involved in DNA repair
ABE28_010080	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_010100	COG0183	Belongs to the thiolase family
ABE28_010110	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_010120	COG1609	Transcriptional regulator
ABE28_010125	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
ABE28_010130	COG0738	Major facilitator superfamily
ABE28_010140	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABE28_010150	COG2210	Belongs to the sulfur carrier protein TusA family
ABE28_010160	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ABE28_010160	COG0425	Belongs to the sulfur carrier protein TusA family
ABE28_010165	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ABE28_010165	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_010170	COG0425	Belongs to the sulfur carrier protein TusA family
ABE28_010175	COG0730	response to heat
ABE28_010180	COG1396	sequence-specific DNA binding
ABE28_010200	COG0778	Nitroreductase
ABE28_010210	COG0840	transmembrane signaling receptor activity
ABE28_010215	COG4152	abc transporter atp-binding protein
ABE28_010220	COG1668	transmembrane transport
ABE28_010235	COG3420	alginic acid biosynthetic process
ABE28_010255	COG1846	Transcriptional regulator
ABE28_010270	COG3706	GGDEF domain
ABE28_010290	COG0745	RESPONSE REGULATOR receiver
ABE28_010295	COG5002	protein histidine kinase activity
ABE28_010300	COG1705	Flagellar rod assembly protein muramidase FlgJ
ABE28_010305	COG1937	Protein conserved in bacteria
ABE28_010310	COG2608	mercury ion transmembrane transporter activity
ABE28_010315	COG2217	Heavy metal translocating P-type atpase
ABE28_010330	COG1131	(ABC) transporter
ABE28_010335	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
ABE28_010340	COG0772	Belongs to the SEDS family
ABE28_010345	COG1309	transcriptional regulator
ABE28_010365	COG3540	Alkaline phosphatase
ABE28_010370	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ABE28_010375	COG0805	protein transport
ABE28_010385	COG1113	amino acid transport
ABE28_010400	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
ABE28_010420	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_010425	COG1846	Transcriptional regulator
ABE28_010430	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ABE28_010435	COG0022	dehydrogenase e1 component
ABE28_010445	COG0346	lactoylglutathione lyase activity
ABE28_010480	COG0384	phenazine biosynthesis protein PhzF
ABE28_010485	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
ABE28_010490	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ABE28_010500	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
ABE28_010510	COG2271	Major facilitator Superfamily
ABE28_010515	COG0277	FAD linked oxidase domain protein
ABE28_010525	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ABE28_010530	COG1228	amidohydrolase
ABE28_010535	COG2271	Major facilitator Superfamily
ABE28_010540	COG0477	Major facilitator Superfamily
ABE28_010545	COG2986	histidine ammonia-lyase
ABE28_010555	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
ABE28_010560	COG1914	H( )-stimulated, divalent metal cation uptake system
ABE28_010565	COG4336	lyase activity
ABE28_010570	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
ABE28_010575	COG1984	allophanate hydrolase subunit 2
ABE28_010580	COG1414	Transcriptional regulator
ABE28_010595	COG0583	DNA-binding transcription factor activity
ABE28_010600	COG0010	Belongs to the arginase family
ABE28_010605	COG2135	peptidase activity
ABE28_010615	COG1115	amino acid carrier protein
ABE28_010625	COG1492	cobalamin metabolic process
ABE28_010635	COG0515	serine threonine protein kinase
ABE28_010640	COG3397	chitin binding
ABE28_010645	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABE28_010650	COG4721	ABC-type cobalt transport system, permease component
ABE28_010655	COG4172	Belongs to the ABC transporter superfamily
ABE28_010665	COG0352	thiamine-phosphate diphosphorylase activity
ABE28_010670	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABE28_010680	COG2022	thiamine diphosphate biosynthetic process
ABE28_010685	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ABE28_010705	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ABE28_010710	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABE28_010725	COG0824	Thioesterase
ABE28_010735	COG4841	protein insertion into membrane
ABE28_010745	COG3093	addiction module antidote protein HigA
ABE28_010755	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
ABE28_010760	COG1832	CoA-binding protein
ABE28_010765	COG0187	DNA topoisomerase II activity
ABE28_010770	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
ABE28_010775	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_010780	COG1960	acyl-CoA dehydrogenase activity
ABE28_010785	COG1960	acyl-CoA dehydrogenase activity
ABE28_010795	COG2030	dehydratase
ABE28_010810	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
ABE28_010815	COG1737	Transcriptional regulator
ABE28_010820	COG1263	PTS System
ABE28_010820	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_010830	COG1472	Belongs to the glycosyl hydrolase 3 family
ABE28_010835	COG3876	Protein conserved in bacteria
ABE28_010840	COG1263	PTS System
ABE28_010840	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_010850	COG0673	inositol 2-dehydrogenase activity
ABE28_010855	COG2814	Major facilitator Superfamily
ABE28_010865	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_010875	COG3964	amidohydrolase
ABE28_010895	COG2188	Transcriptional regulator
ABE28_010905	COG0583	DNA-binding transcription factor activity
ABE28_010910	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ABE28_010915	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABE28_010935	COG0697	spore germination
ABE28_010940	COG0814	amino acid
ABE28_010950	COG1231	oxidoreductase activity
ABE28_010955	COG1271	oxidase subunit
ABE28_010960	COG1294	oxidase, subunit
ABE28_010970	COG1309	transcriptional regulator
ABE28_010975	COG1960	acyl-CoA dehydrogenase activity
ABE28_010980	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_010985	COG0439	Biotin carboxylase
ABE28_010990	COG0511	ligase activity, forming carbon-carbon bonds
ABE28_010995	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABE28_011000	COG1024	Enoyl-CoA hydratase
ABE28_011005	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABE28_011015	COG1335	isochorismatase
ABE28_011020	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
ABE28_011065	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_011065	COG1263	PTS System
ABE28_011075	COG1525	nuclease
ABE28_011090	COG1876	peptidase activity
ABE28_011100	COG2814	Major facilitator Superfamily
ABE28_011105	COG2213	PTS system mannitol-specific
ABE28_011110	COG3711	transcriptional antiterminator
ABE28_011115	COG1070	Carbohydrate kinase
ABE28_011120	COG1063	alcohol dehydrogenase
ABE28_011145	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABE28_011150	COG0454	-acetyltransferase
ABE28_011160	COG0745	RESPONSE REGULATOR receiver
ABE28_011165	COG4607	ABC-type enterochelin transport system periplasmic component
ABE28_011220	COG0840	transmembrane signaling receptor activity
ABE28_011225	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ABE28_011235	COG2814	Major facilitator Superfamily
ABE28_011245	COG1742	UPF0060 membrane protein
ABE28_011250	COG0697	spore germination
ABE28_011280	COG0401	homolog of Blt101
ABE28_011310	COG2244	polysaccharide biosynthetic process
ABE28_011320	COG0833	amino acid
ABE28_011355	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABE28_011365	COG5609	conserved protein (DUF2294)
ABE28_011370	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ABE28_011375	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ABE28_011385	COG2205	protein histidine kinase activity
ABE28_011400	COG2226	methyltransferase
ABE28_011415	COG0741	lytic transglycosylase activity
ABE28_011460	COG0024	Methionine aminopeptidase
ABE28_011475	COG1160	GTP binding
ABE28_011480	COG1960	acyl-CoA dehydrogenase activity
ABE28_011490	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABE28_011515	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABE28_011520	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_011525	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_011535	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ABE28_011545	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
ABE28_011550	COG2721	sulfolactate sulfo-lyase activity
ABE28_011555	COG2721	sulfolactate sulfo-lyase activity
ABE28_011565	COG0753	catalase activity
ABE28_011570	COG1486	melibiose metabolic process
ABE28_011575	COG1447	Phosphotransferase system cellobiose-specific component IIA
ABE28_011590	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ABE28_011600	COG2723	6-phospho-beta-galactosidase activity
ABE28_011620	COG1621	beta-fructofuranosidase activity
ABE28_011625	COG1609	Transcriptional regulator
ABE28_011640	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABE28_011645	COG1621	beta-fructofuranosidase activity
ABE28_011655	COG1609	Transcriptional regulator
ABE28_011665	COG0247	lactate metabolic process
ABE28_011670	COG0277	FAD linked oxidase domain protein
ABE28_011680	COG1176	ABC-type spermidine putrescine transport system, permease component I
ABE28_011690	COG1840	ABC-type Fe3 transport system, periplasmic component
ABE28_011705	COG3852	Histidine kinase
ABE28_011725	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
ABE28_011740	COG2814	Major facilitator Superfamily
ABE28_011745	COG0668	transmembrane transport
ABE28_011780	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABE28_011805	COG0579	oxidoreductase
ABE28_011820	COG0582	viral genome integration into host DNA
ABE28_011825	COG0346	lactoylglutathione lyase activity
ABE28_011830	COG1473	amidohydrolase
ABE28_011835	COG0252	asparaginase activity
ABE28_011840	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABE28_011855	COG4294	response to UV
ABE28_011865	COG1523	belongs to the glycosyl hydrolase 13 family
ABE28_011870	COG0542	response to heat
ABE28_011885	COG1388	LysM domain
ABE28_011885	COG0791	NLP P60 protein
ABE28_011905	COG0583	DNA-binding transcription factor activity
ABE28_011915	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
ABE28_011920	COG1174	glycine betaine transport
ABE28_011925	COG1732	Glycine betaine
ABE28_011930	COG1174	glycine betaine transport
ABE28_011935	COG0517	IMP dehydrogenase activity
ABE28_011935	COG1125	glycine betaine transport
ABE28_011945	COG2271	Major facilitator Superfamily
ABE28_011965	COG0702	epimerase
ABE28_011970	COG0406	alpha-ribazole phosphatase activity
ABE28_011985	COG1403	HNH endonuclease
ABE28_011995	COG0708	Exodeoxyribonuclease III
ABE28_012000	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABE28_012005	COG0297	glycogen (starch) synthase activity
ABE28_012010	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
ABE28_012015	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
ABE28_012020	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ABE28_012030	COG3663	DNA glycosylase
ABE28_012050	COG0730	response to heat
ABE28_012075	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABE28_012080	COG0529	Catalyzes the synthesis of activated sulfate
ABE28_012090	COG0175	sulfate reduction
ABE28_012100	COG0431	NADPH-dependent FMN reductase
ABE28_012105	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
ABE28_012110	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
ABE28_012115	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABE28_012130	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABE28_012135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABE28_012145	COG1164	Oligoendopeptidase f
ABE28_012155	COG3403	YqcI/YcgG family
ABE28_012175	COG2197	response regulator
ABE28_012185	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ABE28_012190	COG0628	permease
ABE28_012200	COG1376	ErfK ybiS ycfS ynhG family protein
ABE28_012220	COG0765	amino acid transport
ABE28_012225	COG0765	amino acid transport
ABE28_012230	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABE28_012235	COG1126	abc transporter atp-binding protein
ABE28_012245	COG0679	Auxin Efflux Carrier
ABE28_012250	COG0590	tRNA wobble adenosine to inosine editing
ABE28_012260	COG2706	6-phosphogluconolactonase activity
ABE28_012275	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
ABE28_012280	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_012295	COG1278	Cold shock
ABE28_012300	COG1024	Enoyl-CoA hydratase
ABE28_012310	COG4608	Belongs to the ABC transporter superfamily
ABE28_012315	COG0444	Belongs to the ABC transporter superfamily
ABE28_012320	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABE28_012325	COG0601	transmembrane transport
ABE28_012330	COG4166	transmembrane transport
ABE28_012405	COG2340	Cysteine-rich secretory protein family
ABE28_012415	COG2176	DNA-directed DNA polymerase activity
ABE28_012420	COG1511	domain protein
ABE28_012430	COG0561	phosphatase activity
ABE28_012435	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ABE28_012445	COG1113	amino acid transport
ABE28_012450	COG3852	Histidine kinase
ABE28_012455	COG3541	Predicted nucleotidyltransferase
ABE28_012460	COG0861	Integral membrane protein TerC family
ABE28_012465	COG0246	Mannitol dehydrogenase
ABE28_012470	COG1063	alcohol dehydrogenase
ABE28_012475	COG2721	sulfolactate sulfo-lyase activity
ABE28_012480	COG2207	Transcriptional regulator
ABE28_012480	COG3708	Transcriptional regulator
ABE28_012485	COG2271	Major facilitator Superfamily
ABE28_012490	COG1609	Transcriptional regulator
ABE28_012495	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_012500	COG1312	Catalyzes the dehydration of D-mannonate
ABE28_012505	COG0800	Aldolase
ABE28_012510	COG1063	alcohol dehydrogenase
ABE28_012515	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
ABE28_012530	COG2046	Belongs to the sulfate adenylyltransferase family
ABE28_012535	COG0529	Catalyzes the synthesis of activated sulfate
ABE28_012540	COG0730	response to heat
ABE28_012545	COG1216	Glycosyl transferase, family 2
ABE28_012545	COG0463	Glycosyl transferase, family 2
ABE28_012550	COG0438	transferase activity, transferring glycosyl groups
ABE28_012560	COG1216	Glycosyl transferase, family 2
ABE28_012580	COG0438	transferase activity, transferring glycosyl groups
ABE28_012595	COG1086	Polysaccharide biosynthesis protein
ABE28_012605	COG2910	NAD(P)H-binding
ABE28_012610	COG1132	(ABC) transporter
ABE28_012620	COG3858	chitin binding
ABE28_012620	COG1388	LysM domain
ABE28_012625	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_012630	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABE28_012635	COG1937	Protein conserved in bacteria
ABE28_012650	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABE28_012655	COG0400	carboxylic ester hydrolase activity
ABE28_012660	COG0346	lactoylglutathione lyase activity
ABE28_012665	COG0346	lactoylglutathione lyase activity
ABE28_012685	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_012690	COG1764	response to oxidative stress
ABE28_012715	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
ABE28_012720	COG1733	regulation of RNA biosynthetic process
ABE28_012740	COG4946	Tricorn protease homolog
ABE28_012740	COG0823	Involved in the tonB-independent uptake of proteins
ABE28_012740	COG1506	peptidase
ABE28_012755	COG0768	penicillin binding
ABE28_012770	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
ABE28_012775	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_012780	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
ABE28_012785	COG1131	(ABC) transporter
ABE28_012795	COG2814	Major facilitator Superfamily
ABE28_012800	COG5002	protein histidine kinase activity
ABE28_012805	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_012820	COG0514	ATP-dependent DNA helicase (RecQ)
ABE28_012825	COG1388	LysM domain
ABE28_012825	COG3584	3D domain protein
ABE28_012840	COG3546	catalase activity
ABE28_012845	COG2996	Protein conserved in bacteria
ABE28_012850	COG5002	protein histidine kinase activity
ABE28_012855	COG0745	RESPONSE REGULATOR receiver
ABE28_012860	COG3706	GGDEF domain
ABE28_012860	COG0745	RESPONSE REGULATOR receiver
ABE28_012885	COG3973	AAA domain
ABE28_012895	COG0488	(ABC) transporter
ABE28_012905	COG2268	Band 7 protein
ABE28_012910	COG1585	Membrane protein implicated in regulation of membrane protease activity
ABE28_012915	COG1268	BioY protein
ABE28_012925	COG1272	protein, Hemolysin III
ABE28_012930	COG0640	Transcriptional regulator
ABE28_012935	COG3773	Cell wall hydrolase
ABE28_012945	COG0432	Pfam Uncharacterised protein family UPF0047
ABE28_012955	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABE28_012955	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ABE28_012955	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ABE28_012960	COG1105	Belongs to the carbohydrate kinase PfkB family
ABE28_012965	COG1349	DNA-binding transcription factor activity
ABE28_012970	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABE28_012975	COG0567	Dehydrogenase, E1 component
ABE28_012980	COG3384	dioxygenase
ABE28_012990	COG0646	methionine synthase
ABE28_012990	COG1410	methionine synthase
ABE28_012995	COG0646	methionine synthase
ABE28_012995	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ABE28_013000	COG2258	MOSC domain
ABE28_013005	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
ABE28_013010	COG1793	dna ligase
ABE28_013010	COG3285	dna ligase
ABE28_013015	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
ABE28_013025	COG0288	reversible hydration of carbon dioxide
ABE28_013055	COG1380	Effector of murein hydrolase LrgA
ABE28_013060	COG1346	cytolysis
ABE28_013070	COG0668	transmembrane transport
ABE28_013075	COG0534	Mate efflux family protein
ABE28_013080	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_013090	COG2340	Cysteine-rich secretory protein family
ABE28_013100	COG5002	protein histidine kinase activity
ABE28_013105	COG0745	RESPONSE REGULATOR receiver
ABE28_013125	COG0523	cobalamin synthesis protein
ABE28_013130	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
ABE28_013135	COG0235	Class ii aldolase
ABE28_013140	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
ABE28_013145	COG1850	ribulose-bisphosphate carboxylase activity
ABE28_013150	COG0436	Aminotransferase
ABE28_013155	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABE28_013160	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
ABE28_013165	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
ABE28_013175	COG3409	Peptidoglycan-binding domain 1 protein
ABE28_013175	COG0793	Belongs to the peptidase S41A family
ABE28_013230	COG2801	Transposase and inactivated derivatives
ABE28_013240	COG5002	protein histidine kinase activity
ABE28_013245	COG4479	Belongs to the UPF0346 family
ABE28_013255	COG1509	lysine 2,3-aminomutase activity
ABE28_013260	COG3829	transcription factor binding
ABE28_013265	COG0456	acetyltransferase
ABE28_013270	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABE28_013275	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABE28_013280	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABE28_013285	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
ABE28_013295	COG1619	proteins homologs of microcin C7 resistance protein MccF
ABE28_013310	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABE28_013315	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABE28_013325	COG4698	Protein conserved in bacteria
ABE28_013335	COG1999	signal sequence binding
ABE28_013340	COG1307	EDD domain protein, DegV family
ABE28_013350	COG0805	protein transport
ABE28_013355	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ABE28_013360	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ABE28_013365	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
ABE28_013385	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
ABE28_013390	COG0861	Integral membrane protein TerC family
ABE28_013400	COG0405	Gamma-glutamyltransferase
ABE28_013405	COG2136	Putative SAM-dependent methyltransferase
ABE28_013405	COG2521	methyltransferase
ABE28_013415	COG1388	LysM domain
ABE28_013425	COG0129	dihydroxy-acid dehydratase activity
ABE28_013430	COG1413	lyase activity
ABE28_013435	COG0488	(ABC) transporter
ABE28_013440	COG1418	mRNA catabolic process
ABE28_013445	COG1307	EDD domain protein, DegV family
ABE28_013450	COG0386	Belongs to the glutathione peroxidase family
ABE28_013460	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
ABE28_013480	COG1321	iron dependent repressor
ABE28_013495	COG2213	PTS system mannitol-specific
ABE28_013500	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABE28_013505	COG0246	Mannitol dehydrogenase
ABE28_013510	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
ABE28_013515	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABE28_013520	COG1349	DNA-binding transcription factor activity
ABE28_013530	COG2318	DinB family
ABE28_013555	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_013565	COG0395	ABC-type sugar transport system, permease component
ABE28_013570	COG1175	transmembrane transport
ABE28_013580	COG1609	Transcriptional regulator
ABE28_013585	COG3684	Belongs to the aldolase LacD family
ABE28_013595	COG2222	sugar isomerase
ABE28_013600	COG1940	carbohydrate kinase activity
ABE28_013605	COG0395	ABC-type sugar transport system, permease component
ABE28_013625	COG1609	Transcriptional regulator
ABE28_013640	COG1940	carbohydrate kinase activity
ABE28_013650	COG0778	Nitroreductase
ABE28_013660	COG1737	Transcriptional regulator
ABE28_013665	COG2971	BadF BadG BcrA BcrD
ABE28_013675	COG1447	Phosphotransferase system cellobiose-specific component IIA
ABE28_013680	COG1486	melibiose metabolic process
ABE28_013690	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ABE28_013705	COG1649	PFAM Uncharacterised BCR, COG1649
ABE28_013715	COG0833	amino acid
ABE28_013725	COG1288	antiporter activity
ABE28_013730	COG4187	Peptidase family M20/M25/M40
ABE28_013745	COG1414	Transcriptional regulator
ABE28_013755	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABE28_013760	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
ABE28_013765	COG3716	PTS system mannose fructose sorbose family IID component
ABE28_013770	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_013780	COG1737	Transcriptional regulator
ABE28_013785	COG0531	amino acid
ABE28_013795	COG0666	response to abiotic stimulus
ABE28_013800	COG0745	RESPONSE REGULATOR receiver
ABE28_013805	COG5002	protein histidine kinase activity
ABE28_013810	COG1233	COG1233 Phytoene dehydrogenase and related
ABE28_013815	COG1562	ergosterol biosynthetic process
ABE28_013820	COG1233	COG1233 Phytoene dehydrogenase and related
ABE28_013850	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
ABE28_013855	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
ABE28_013870	COG1959	2 iron, 2 sulfur cluster binding
ABE28_013875	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ABE28_013885	COG0328	RNA-DNA hybrid ribonuclease activity
ABE28_013890	COG0328	RNA-DNA hybrid ribonuclease activity
ABE28_013905	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ABE28_013920	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
ABE28_013925	COG1755	Isoprenylcysteine carboxyl methyltransferase
ABE28_013930	COG3424	synthase
ABE28_013940	COG2233	PERMEase
ABE28_013945	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ABE28_013950	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
ABE28_013955	COG1199	ATP-dependent helicase activity
ABE28_013965	COG1278	Cold shock
ABE28_013970	COG0116	Belongs to the methyltransferase superfamily
ABE28_013985	COG3599	regulation of cell shape
ABE28_014000	COG3359	exonuclease
ABE28_014005	COG1205	dead DEAH box helicase
ABE28_014005	COG1111	helicase
ABE28_014010	COG2267	carboxylic ester hydrolase activity
ABE28_014040	COG3331	DNA recombination
ABE28_014045	COG4499	WXG100 protein secretion system (Wss), protein YukC
ABE28_014045	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABE28_014055	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ABE28_014060	COG3935	DnaD domain protein
ABE28_014065	COG0017	Asparaginyl-tRNA synthetase
ABE28_014095	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_014100	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABE28_014110	COG0436	Aminotransferase
ABE28_014115	COG5353	protein conserved in bacteria
ABE28_014125	COG1199	ATP-dependent helicase activity
ABE28_014125	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABE28_014130	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
ABE28_014135	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ABE28_014140	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
ABE28_014150	COG0617	tRNA 3'-terminal CCA addition
ABE28_014155	COG0438	transferase activity, transferring glycosyl groups
ABE28_014160	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
ABE28_014165	COG1803	Methylglyoxal synthase
ABE28_014175	COG1694	Mazg nucleotide pyrophosphohydrolase
ABE28_014180	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_014185	COG2738	Putative neutral zinc metallopeptidase
ABE28_014195	COG4347	Protein of unknown function (DUF1405)
ABE28_014200	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ABE28_014200	COG2010	Cytochrome c
ABE28_014220	COG5582	Belongs to the UPF0302 family
ABE28_014225	COG0457	Tetratricopeptide repeat
ABE28_014230	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ABE28_014235	COG0287	Prephenate dehydrogenase
ABE28_014240	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ABE28_014245	COG4401	Chorismate mutase type I
ABE28_014250	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
ABE28_014255	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
ABE28_014260	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ABE28_014265	COG0105	UTP biosynthetic process
ABE28_014270	COG0142	geranyltranstransferase activity
ABE28_014275	COG2226	methyltransferase
ABE28_014280	COG0142	geranyltranstransferase activity
ABE28_014290	COG0302	gtp cyclohydrolase
ABE28_014295	COG0776	regulation of translation
ABE28_014300	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
ABE28_014320	COG3829	transcription factor binding
ABE28_014320	COG3290	protein histidine kinase activity
ABE28_014325	COG0531	amino acid
ABE28_014350	COG1304	FMN binding
ABE28_014355	COG0539	negative regulation of cytoplasmic translation
ABE28_014365	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
ABE28_014380	COG2959	enzyme of heme biosynthesis
ABE28_014385	COG3773	Cell wall hydrolase
ABE28_014385	COG3409	Peptidoglycan-binding domain 1 protein
ABE28_014390	COG2339	peptidase activity
ABE28_014400	COG0492	ferredoxin-NADP+ reductase activity
ABE28_014405	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABE28_014410	COG4862	establishment of competence for transformation
ABE28_014420	COG1408	metallophosphoesterase
ABE28_014430	COG1388	LysM domain
ABE28_014435	COG1266	CAAX protease self-immunity
ABE28_014440	COG0514	ATP-dependent DNA helicase (RecQ)
ABE28_014445	COG4955	Helix-turn-helix domain
ABE28_014455	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
ABE28_014460	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABE28_014470	COG1595	DNA-templated transcription, initiation
ABE28_014475	COG5002	protein histidine kinase activity
ABE28_014480	COG0745	RESPONSE REGULATOR receiver
ABE28_014485	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ABE28_014490	COG1333	cytochrome c biogenesis protein
ABE28_014495	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABE28_014500	COG1187	pseudouridine synthase activity
ABE28_014505	COG0700	Nucleoside recognition
ABE28_014510	COG2715	membrane protein required for spore maturation
ABE28_014515	COG1686	Belongs to the peptidase S11 family
ABE28_014525	COG0450	alkyl hydroperoxide reductase
ABE28_014530	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ABE28_014545	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ABE28_014555	COG1547	Domain of unknown function (DUF309)
ABE28_014565	COG4086	secreted protein
ABE28_014575	COG0697	spore germination
ABE28_014595	COG2252	PERMEase
ABE28_014605	COG2172	sigma factor antagonist activity
ABE28_014615	COG1686	Belongs to the peptidase S11 family
ABE28_014635	COG4974	Belongs to the 'phage' integrase family
ABE28_014645	COG0735	belongs to the Fur family
ABE28_014650	COG1300	Membrane
ABE28_014660	COG1379	DNA repair
ABE28_014670	COG0667	Aldo Keto reductase
ABE28_014675	COG1764	response to oxidative stress
ABE28_014680	COG1846	Transcriptional regulator
ABE28_014690	COG1073	alpha beta
ABE28_014695	COG4918	Iron-sulphur cluster biosynthesis
ABE28_014705	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ABE28_014710	COG0791	NLP P60 protein
ABE28_014710	COG1388	LysM domain
ABE28_014725	COG0300	oxidoreductase activity
ABE28_014730	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_014735	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ABE28_014745	COG0789	Transcriptional regulator
ABE28_014750	COG1122	ATPase activity
ABE28_014775	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ABE28_014785	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
ABE28_014790	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ABE28_014795	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABE28_014800	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABE28_014810	COG1376	ErfK ybiS ycfS ynhG family protein
ABE28_014815	COG4129	membrane
ABE28_014820	COG1126	abc transporter atp-binding protein
ABE28_014825	COG0765	amino acid transport
ABE28_014830	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABE28_014840	COG1703	isobutyryl-CoA mutase activity
ABE28_014845	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
ABE28_014845	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
ABE28_014855	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABE28_014860	COG0022	dehydrogenase e1 component
ABE28_014865	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ABE28_014870	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABE28_014880	COG3290	protein histidine kinase activity
ABE28_014880	COG3829	transcription factor binding
ABE28_014890	COG0584	glycerophosphoryl diester phosphodiesterase
ABE28_014900	COG0745	RESPONSE REGULATOR receiver
ABE28_014905	COG0750	zinc metalloprotease
ABE28_014910	COG0497	DNA recombination
ABE28_014915	COG1438	arginine binding
ABE28_014920	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
ABE28_014925	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
ABE28_014935	COG1722	exodeoxyribonuclease VII activity
ABE28_014950	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ABE28_014955	COG1302	Protein conserved in bacteria
ABE28_014960	COG0439	Biotin carboxylase
ABE28_014965	COG0511	ligase activity, forming carbon-carbon bonds
ABE28_015005	COG3854	ATPases associated with a variety of cellular activities
ABE28_015010	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ABE28_015015	COG0006	proline dipeptidase activity
ABE28_015030	COG3872	metal-dependent enzyme
ABE28_015040	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABE28_015055	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABE28_015060	COG0095	Lipoate-protein ligase
ABE28_015065	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ABE28_015070	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
ABE28_015075	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
ABE28_015085	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ABE28_015120	COG4537	Required for transformation and DNA binding
ABE28_015125	COG1459	type II secretion system
ABE28_015130	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ABE28_015135	COG1393	Belongs to the ArsC family
ABE28_015155	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_015170	COG1404	Belongs to the peptidase S8 family
ABE28_015185	COG1940	carbohydrate kinase activity
ABE28_015200	COG0457	Tetratricopeptide repeat
ABE28_015200	COG0705	Rhomboid family
ABE28_015210	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ABE28_015230	COG0704	Plays a role in the regulation of phosphate uptake
ABE28_015240	COG0581	inorganic phosphate transmembrane transporter activity
ABE28_015245	COG0573	inorganic phosphate transmembrane transporter activity
ABE28_015250	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ABE28_015260	COG0477	Major facilitator Superfamily
ABE28_015270	COG2839	Protein conserved in bacteria
ABE28_015275	COG5521	maltodextrose utilization protein MalA
ABE28_015285	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
ABE28_015290	COG4709	membrane
ABE28_015295	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
ABE28_015300	COG0735	belongs to the Fur family
ABE28_015305	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABE28_015310	COG1121	(ABC) transporter
ABE28_015320	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
ABE28_015325	COG0513	Belongs to the DEAD box helicase family
ABE28_015345	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ABE28_015350	COG2384	SAM-dependent methyltransferase
ABE28_015355	COG2010	Cytochrome c
ABE28_015365	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ABE28_015370	COG0358	DNA primase activity
ABE28_015375	COG1671	Belongs to the UPF0178 family
ABE28_015380	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
ABE28_015385	COG0517	IMP dehydrogenase activity
ABE28_015390	COG0751	glycine-tRNA ligase activity
ABE28_015395	COG0752	glycyl-tRNA synthetase alpha subunit
ABE28_015400	COG1381	Involved in DNA repair and RecF pathway recombination
ABE28_015410	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ABE28_015415	COG0295	cytidine deaminase activity
ABE28_015420	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ABE28_015430	COG1480	7TM receptor with intracellular HD hydrolase
ABE28_015435	COG1702	phosphate starvation-inducible protein PhoH
ABE28_015455	COG4864	UPF0365 protein
ABE28_015460	COG1030	water channel activity
ABE28_015465	COG1610	YqeY-like protein
ABE28_015470	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ABE28_015475	COG1283	sodium-dependent phosphate transmembrane transporter activity
ABE28_015485	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
ABE28_015490	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ABE28_015495	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABE28_015500	COG2264	protein methyltransferase activity
ABE28_015505	COG0484	heat shock protein binding
ABE28_015510	COG0443	Heat shock 70 kDa protein
ABE28_015525	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABE28_015540	COG0860	N-Acetylmuramoyl-L-alanine amidase
ABE28_015550	COG0268	Binds directly to 16S ribosomal RNA
ABE28_015555	COG1466	dna polymerase III delta subunit
ABE28_015565	COG2333	competence protein COMEC
ABE28_015565	COG0658	competence protein
ABE28_015570	COG2131	deaminase
ABE28_015575	COG1555	photosystem II stabilization
ABE28_015575	COG1596	polysaccharide export
ABE28_015580	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ABE28_015585	COG2226	methyltransferase
ABE28_015590	COG0799	negative regulation of ribosome biogenesis
ABE28_015595	COG1713	HD superfamily hydrolase involved in NAD metabolism
ABE28_015600	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ABE28_015605	COG1534	Rna-binding protein
ABE28_015615	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
ABE28_015620	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
ABE28_015630	COG0688	phosphatidylethanolamine metabolic process
ABE28_015635	COG1183	phosphatidylcholine synthase activity
ABE28_015650	COG1191	sigma factor activity
ABE28_015665	COG0626	cystathionine gamma-synthase activity
ABE28_015670	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ABE28_015680	COG2226	methyltransferase
ABE28_015695	COG0768	penicillin binding
ABE28_015700	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ABE28_015705	COG0572	uridine kinase
ABE28_015725	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ABE28_015730	COG3906	Belongs to the UPF0473 family
ABE28_015735	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ABE28_015750	COG0628	permease
ABE28_015760	COG3881	PFAM PRC-barrel domain
ABE28_015770	COG1704	LemA family
ABE28_015775	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ABE28_015785	COG0482	sulfurtransferase activity
ABE28_015790	COG1104	cysteine desulfurase activity
ABE28_015795	COG1959	2 iron, 2 sulfur cluster binding
ABE28_015810	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ABE28_015825	COG1131	(ABC) transporter
ABE28_015830	COG1725	Transcriptional regulator
ABE28_015840	COG1316	TRANSCRIPTIONal
ABE28_015855	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ABE28_015860	COG0438	transferase activity, transferring glycosyl groups
ABE28_015875	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ABE28_015880	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ABE28_015900	COG0489	protein tyrosine kinase activity
ABE28_015905	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ABE28_015910	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABE28_015925	COG1215	transferase activity, transferring glycosyl groups
ABE28_016000	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ABE28_016010	COG1086	Polysaccharide biosynthesis protein
ABE28_016020	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ABE28_016030	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ABE28_016035	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
ABE28_016045	COG4464	protein tyrosine phosphatase activity
ABE28_016050	COG0489	protein tyrosine kinase activity
ABE28_016055	COG3944	biosynthesis protein
ABE28_016085	COG3328	transposase activity
ABE28_016095	COG0411	ABC transporter
ABE28_016105	COG0559	Belongs to the binding-protein-dependent transport system permease family
ABE28_016120	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ABE28_016140	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ABE28_016145	COG0124	histidyl-tRNA synthetase
ABE28_016150	COG3103	Sh3 type 3 domain protein
ABE28_016150	COG0860	N-Acetylmuramoyl-L-alanine amidase
ABE28_016150	COG4991	sh3 domain protein
ABE28_016155	COG1490	D-aminoacyl-tRNA deacylase activity
ABE28_016160	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABE28_016165	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ABE28_016170	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ABE28_016170	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
ABE28_016175	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABE28_016175	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABE28_016185	COG2244	polysaccharide biosynthetic process
ABE28_016190	COG2323	membrane
ABE28_016200	COG1862	Preprotein translocase
ABE28_016210	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
ABE28_016265	COG2321	neutral zinc metallopeptidase
ABE28_016275	COG0157	Belongs to the NadC ModD family
ABE28_016280	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
ABE28_016285	COG1104	cysteine desulfurase activity
ABE28_016290	COG1827	regulation of RNA biosynthetic process
ABE28_016305	COG2801	Transposase and inactivated derivatives
ABE28_016310	COG0077	Prephenate dehydratase
ABE28_016315	COG4492	Belongs to the UPF0735 family
ABE28_016320	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
ABE28_016325	COG3290	protein histidine kinase activity
ABE28_016335	COG2868	ribosomal protein
ABE28_016340	COG0261	This protein binds to 23S rRNA in the presence of protein L20
ABE28_016345	COG1530	ribonuclease E activity
ABE28_016350	COG1994	Peptidase M50
ABE28_016355	COG0739	heme binding
ABE28_016360	COG1098	S1 RNA binding domain
ABE28_016365	COG2894	cell division
ABE28_016380	COG1792	Involved in formation and maintenance of cell shape
ABE28_016385	COG1077	Cell shape determining protein MreB Mrl
ABE28_016390	COG2003	Belongs to the UPF0758 family
ABE28_016405	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
ABE28_016410	COG0285	dihydrofolate synthase activity
ABE28_016415	COG0189	ligase activity
ABE28_016420	COG0189	ligase activity
ABE28_016425	COG0525	valine-tRNA ligase activity
ABE28_016435	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ABE28_016440	COG1388	LysM domain
ABE28_016445	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ABE28_016450	COG0113	porphobilinogen synthase activity
ABE28_016460	COG0181	hydroxymethylbilane synthase activity
ABE28_016465	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ABE28_016480	COG0218	Necessary for normal cell division and for the maintenance of normal septation
ABE28_016485	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ABE28_016490	COG0470	DNA polymerase III
ABE28_016490	COG1067	ATP-dependent peptidase activity
ABE28_016505	COG0544	peptidyl-prolyl cis-trans isomerase activity
ABE28_016515	COG0066	3-isopropylmalate dehydratase activity
ABE28_016520	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ABE28_016525	COG0473	3-isopropylmalate dehydrogenase activity
ABE28_016530	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABE28_016535	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
ABE28_016540	COG0440	acetolactate synthase activity
ABE28_016545	COG0028	Belongs to the TPP enzyme family
ABE28_016605	COG1131	(ABC) transporter
ABE28_016625	COG0622	Phosphoesterase
ABE28_016630	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ABE28_016635	COG5401	PFAM Sporulation and spore germination
ABE28_016645	COG1846	Transcriptional regulator
ABE28_016650	COG2197	response regulator
ABE28_016655	COG0824	Thioesterase
ABE28_016660	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ABE28_016665	COG1053	succinate dehydrogenase
ABE28_016670	COG2009	succinate dehydrogenase
ABE28_016675	COG1719	4-vinyl reductase, 4VR
ABE28_016690	COG3118	belongs to the thioredoxin family
ABE28_016695	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
ABE28_016700	COG2086	electron transfer activity
ABE28_016705	COG1024	Enoyl-CoA hydratase
ABE28_016710	COG1309	transcriptional regulator
ABE28_016715	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_016720	COG3766	membrane
ABE28_016725	COG1193	negative regulation of DNA recombination
ABE28_016730	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
ABE28_016730	COG1796	DNA polymerase
ABE28_016735	COG1286	toxin biosynthetic process
ABE28_016740	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
ABE28_016745	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ABE28_016750	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABE28_016750	COG0072	phenylalanine-tRNA ligase activity
ABE28_016755	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
ABE28_016760	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABE28_016785	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
ABE28_016790	COG0247	lactate metabolic process
ABE28_016795	COG0277	FAD linked oxidase domain protein
ABE28_016800	COG3835	regulator
ABE28_016805	COG1620	l-lactate permease
ABE28_016810	COG2186	Transcriptional regulator
ABE28_016815	COG0247	lactate metabolic process
ABE28_016820	COG1139	Iron-sulfur cluster binding protein
ABE28_016825	COG1556	Lactate utilization protein
ABE28_016830	COG1363	Peptidase, m42
ABE28_016850	COG3326	Membrane
ABE28_016855	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ABE28_016865	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ABE28_016870	COG1247	-acetyltransferase
ABE28_016875	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
ABE28_016885	COG1484	DNA-dependent DNA replication
ABE28_016890	COG3611	Membrane attachment protein
ABE28_016895	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ABE28_016900	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
ABE28_016905	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ABE28_016910	COG0237	dephospho-CoA kinase activity
ABE28_016915	COG1971	Probably functions as a manganese efflux pump
ABE28_016920	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
ABE28_016925	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ABE28_016925	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ABE28_016930	COG0330	HflC and HflK could
ABE28_016935	COG0330	HflC and HflK could
ABE28_016940	COG5002	protein histidine kinase activity
ABE28_016945	COG0745	RESPONSE REGULATOR receiver
ABE28_016950	COG0039	L-malate dehydrogenase activity
ABE28_016955	COG0538	isocitrate dehydrogenase activity
ABE28_016960	COG0372	Belongs to the citrate synthase family
ABE28_016965	COG2707	UPF0756 membrane protein
ABE28_016970	COG0628	permease
ABE28_016975	COG2224	Isocitrate lyase
ABE28_016980	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ABE28_016995	COG0205	6-phosphofructokinase activity
ABE28_017000	COG0825	malonyl-CoA metabolic process
ABE28_017005	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
ABE28_017010	COG2186	Transcriptional regulator
ABE28_017015	COG0281	malic enzyme
ABE28_017020	COG0587	DNA-directed DNA polymerase activity
ABE28_017035	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
ABE28_017045	COG4109	DRTGG domain
ABE28_017065	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
ABE28_017070	COG0006	proline dipeptidase activity
ABE28_017080	COG0589	response to stress
ABE28_017085	COG0165	Argininosuccinate lyase
ABE28_017090	COG0137	argininosuccinate synthase activity
ABE28_017100	COG0521	Mo-molybdopterin cofactor biosynthetic process
ABE28_017105	COG2217	Heavy metal translocating P-type atpase
ABE28_017110	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ABE28_017115	COG0827	DNA restriction-modification system
ABE28_017120	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
ABE28_017130	COG3874	Sporulation protein YtfJ
ABE28_017140	COG1714	RDD family
ABE28_017145	COG0616	signal peptide processing
ABE28_017150	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ABE28_017170	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ABE28_017185	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABE28_017195	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABE28_017205	COG2962	Rard protein
ABE28_017210	COG1574	metal-dependent hydrolase with the TIM-barrel fold
ABE28_017215	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABE28_017225	COG0301	tRNA thio-modification
ABE28_017230	COG1104	cysteine desulfurase activity
ABE28_017240	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
ABE28_017245	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
ABE28_017250	COG1309	transcriptional regulator
ABE28_017255	COG1956	GAF domain-containing protein
ABE28_017260	COG2203	Gaf domain
ABE28_017260	COG2199	diguanylate cyclase activity
ABE28_017265	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
ABE28_017300	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABE28_017305	COG0454	-acetyltransferase
ABE28_017310	COG0517	IMP dehydrogenase activity
ABE28_017315	COG0123	including yeast histone deacetylase and acetoin utilization protein
ABE28_017325	COG1609	Transcriptional regulator
ABE28_017330	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
ABE28_017330	COG1605	Chorismate mutase
ABE28_017335	COG0849	cell division
ABE28_017345	COG3118	belongs to the thioredoxin family
ABE28_017350	COG4980	gas vesicle protein
ABE28_017355	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
ABE28_017360	COG2309	aminopeptidase activity
ABE28_017370	COG1674	ftsk spoiiie
ABE28_017375	COG1473	amidohydrolase
ABE28_017380	COG4848	Belongs to the UPF0354 family
ABE28_017385	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABE28_017400	COG3708	Transcriptional regulator
ABE28_017400	COG2207	Transcriptional regulator
ABE28_017405	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
ABE28_017410	COG1363	Peptidase, m42
ABE28_017420	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_017425	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ABE28_017435	COG0510	thiamine kinase activity
ABE28_017445	COG1597	lipid kinase activity
ABE28_017460	COG1914	H( )-stimulated, divalent metal cation uptake system
ABE28_017475	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABE28_017485	COG0586	Pfam SNARE associated Golgi protein
ABE28_017510	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ABE28_017510	COG1587	Uroporphyrinogen-III synthase
ABE28_017515	COG1587	Uroporphyrinogen-III synthase
ABE28_017530	COG0039	L-malate dehydrogenase activity
ABE28_017535	COG1620	l-lactate permease
ABE28_017540	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ABE28_017550	COG1309	transcriptional regulator
ABE28_017555	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_017565	COG0701	Predicted permease
ABE28_017580	COG2824	Alkylphosphonate utilization operon protein PhnA
ABE28_017585	COG0745	RESPONSE REGULATOR receiver
ABE28_017590	COG0642	Histidine kinase
ABE28_017595	COG1136	(ABC) transporter
ABE28_017600	COG0577	efflux transmembrane transporter activity
ABE28_017645	COG3842	ATPase activity
ABE28_017650	COG1349	DNA-binding transcription factor activity
ABE28_017655	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABE28_017660	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABE28_017660	COG2169	Transcriptional regulator
ABE28_017670	COG1349	DNA-binding transcription factor activity
ABE28_017675	COG1187	pseudouridine synthase activity
ABE28_017680	COG2244	polysaccharide biosynthetic process
ABE28_017685	COG2081	HI0933 family
ABE28_017700	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_017715	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ABE28_017720	COG2814	Major facilitator Superfamily
ABE28_017725	COG3848	Pyruvate phosphate dikinase
ABE28_017725	COG0574	Belongs to the PEP-utilizing enzyme family
ABE28_017740	COG0656	L-ascorbic acid biosynthetic process
ABE28_017745	COG2814	Major facilitator Superfamily
ABE28_017750	COG1733	regulation of RNA biosynthetic process
ABE28_017765	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ABE28_017770	COG1647	Serine aminopeptidase, S33
ABE28_017790	COG1309	transcriptional regulator
ABE28_017805	COG0720	synthase
ABE28_017815	COG0840	transmembrane signaling receptor activity
ABE28_017845	COG4195	phage-related replication protein
ABE28_017850	COG0791	NLP P60 protein
ABE28_017860	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
ABE28_017865	COG0840	transmembrane signaling receptor activity
ABE28_017875	COG2318	DinB family
ABE28_017895	COG3328	transposase activity
ABE28_017900	COG0456	acetyltransferase
ABE28_017905	COG2002	toxin-antitoxin pair type II binding
ABE28_017910	COG0697	spore germination
ABE28_017915	COG2076	Multidrug Resistance protein
ABE28_017920	COG2076	Multidrug Resistance protein
ABE28_017930	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ABE28_017940	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABE28_017950	COG0697	spore germination
ABE28_017955	COG0586	Pfam SNARE associated Golgi protein
ABE28_017960	COG0671	phosphoesterase, PA-phosphatase related
ABE28_017980	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABE28_017985	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABE28_017990	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_018000	COG3829	transcription factor binding
ABE28_018010	COG2514	catechol 2,3-dioxygenase activity
ABE28_018015	COG2259	Doxx family
ABE28_018025	COG0534	Mate efflux family protein
ABE28_018035	COG0444	Belongs to the ABC transporter superfamily
ABE28_018040	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABE28_018060	COG1126	abc transporter atp-binding protein
ABE28_018075	COG1309	transcriptional regulator
ABE28_018080	COG0246	Mannitol dehydrogenase
ABE28_018085	COG3711	transcriptional antiterminator
ABE28_018090	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABE28_018090	COG2213	PTS system mannitol-specific
ABE28_018095	COG2851	Citrate transporter
ABE28_018100	COG0024	Methionine aminopeptidase
ABE28_018105	COG4565	transcriptional regulatory protein
ABE28_018110	COG3290	protein histidine kinase activity
ABE28_018115	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
ABE28_018120	COG2169	Transcriptional regulator
ABE28_018125	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABE28_018145	COG3142	Participates in the control of copper homeostasis
ABE28_018150	COG1959	2 iron, 2 sulfur cluster binding
ABE28_018160	COG0789	Transcriptional regulator
ABE28_018165	COG1357	PFAM Pentapeptide repeats (8 copies)
ABE28_018175	COG2746	aminoglycoside 3-N-acetyltransferase activity
ABE28_018185	COG1823	symporter activity
ABE28_018205	COG1113	amino acid transport
ABE28_018215	COG0785	Cytochrome C biogenesis protein
ABE28_018230	COG2197	response regulator
ABE28_018235	COG4585	Histidine kinase
ABE28_018245	COG1842	Phage shock protein A
ABE28_018255	COG1309	transcriptional regulator
ABE28_018260	COG3844	kynureninase activity
ABE28_018265	COG1113	amino acid transport
ABE28_018270	COG3483	tryptophan 2,3-dioxygenase activity
ABE28_018275	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
ABE28_018285	COG1280	lysine exporter protein (LysE YggA)
ABE28_018295	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABE28_018310	COG0716	FMN binding
ABE28_018315	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABE28_018330	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ABE28_018340	COG0577	efflux transmembrane transporter activity
ABE28_018340	COG1136	(ABC) transporter
ABE28_018365	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_018375	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ABE28_018380	COG0583	DNA-binding transcription factor activity
ABE28_018385	COG1511	domain protein
ABE28_018390	COG2258	MOSC domain
ABE28_018395	COG2814	Major facilitator Superfamily
ABE28_018400	COG1309	transcriptional regulator
ABE28_018405	COG1113	amino acid transport
ABE28_018410	COG2814	Major facilitator Superfamily
ABE28_018415	COG1280	lysine exporter protein (LysE YggA)
ABE28_018420	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
ABE28_018440	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ABE28_018445	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABE28_018450	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABE28_018455	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
ABE28_018470	COG1509	lysine 2,3-aminomutase activity
ABE28_018475	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ABE28_018480	COG3829	transcription factor binding
ABE28_018490	COG1876	peptidase activity
ABE28_018495	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABE28_018500	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABE28_018505	COG2610	gluconate transmembrane transporter activity
ABE28_018510	COG3290	protein histidine kinase activity
ABE28_018510	COG3829	transcription factor binding
ABE28_018520	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABE28_018525	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_018550	COG3011	Protein conserved in bacteria
ABE28_018590	COG2610	gluconate transmembrane transporter activity
ABE28_018595	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_018600	COG2610	gluconate transmembrane transporter activity
ABE28_018605	COG0583	DNA-binding transcription factor activity
ABE28_018615	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ABE28_018635	COG1376	ErfK ybiS ycfS ynhG family protein
ABE28_018660	COG4989	oxidoreductase activity
ABE28_018665	COG0840	transmembrane signaling receptor activity
ABE28_018665	COG5278	phosphoserine phosphatase activity
ABE28_018670	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABE28_018675	COG0697	spore germination
ABE28_018690	COG0494	nUDIX hydrolase
ABE28_018705	COG5444	nuclease activity
ABE28_018715	COG0477	Major facilitator Superfamily
ABE28_018745	COG5444	nuclease activity
ABE28_018755	COG0477	Major facilitator Superfamily
ABE28_018785	COG5444	nuclease activity
ABE28_018790	COG2814	Major facilitator Superfamily
ABE28_018800	COG1132	(ABC) transporter
ABE28_018810	COG1120	ATPase activity
ABE28_018815	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_018820	COG1464	Belongs to the NlpA lipoprotein family
ABE28_018830	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABE28_018835	COG2819	hydrolase of the alpha beta superfamily
ABE28_018845	COG0156	8-amino-7-oxononanoate synthase activity
ABE28_018855	COG2205	protein histidine kinase activity
ABE28_018860	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ABE28_018870	COG3973	AAA domain
ABE28_018905	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABE28_018920	COG2721	sulfolactate sulfo-lyase activity
ABE28_018930	COG2721	sulfolactate sulfo-lyase activity
ABE28_018945	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABE28_018950	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_018955	COG1414	Transcriptional regulator
ABE28_018985	COG2190	(PTS) system
ABE28_019000	COG5577	PFAM Coat F domain
ABE28_019015	COG2602	Beta-lactamase
ABE28_019055	COG1051	belongs to the nudix hydrolase family
ABE28_019090	COG2814	Major facilitator Superfamily
ABE28_019105	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_019110	COG1605	Chorismate mutase
ABE28_019110	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
ABE28_019115	COG0077	Prephenate dehydratase
ABE28_019120	COG1917	Cupin 2, conserved barrel domain protein
ABE28_019135	COG2814	Major facilitator Superfamily
ABE28_019140	COG0436	Aminotransferase
ABE28_019160	COG1464	Belongs to the NlpA lipoprotein family
ABE28_019165	COG2011	ABC-type metal ion transport system permease component
ABE28_019170	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABE28_019195	COG0154	amidase activity
ABE28_019230	COG0596	Alpha beta hydrolase
ABE28_019240	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_019245	COG1454	alcohol dehydrogenase
ABE28_019250	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_019255	COG1609	Transcriptional regulator
ABE28_019280	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABE28_019285	COG0477	Major facilitator Superfamily
ABE28_019295	COG1966	Carbon starvation protein
ABE28_019300	COG3279	Response regulator of the LytR AlgR family
ABE28_019305	COG3275	phosphorelay sensor kinase activity
ABE28_019310	COG1193	negative regulation of DNA recombination
ABE28_019320	COG2271	Major facilitator Superfamily
ABE28_019325	COG1473	amidohydrolase
ABE28_019330	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
ABE28_019335	COG3842	ATPase activity
ABE28_019340	COG1176	ABC-type spermidine putrescine transport system, permease component I
ABE28_019345	COG1176	ABC-type spermidine putrescine transport system, permease component I
ABE28_019365	COG2190	(PTS) system
ABE28_019365	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_019365	COG1263	PTS System
ABE28_019370	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
ABE28_019375	COG1027	Aspartate ammonia-lyase
ABE28_019405	COG2233	PERMEase
ABE28_019410	COG0402	S-adenosylhomocysteine deaminase activity
ABE28_019415	COG0402	S-adenosylhomocysteine deaminase activity
ABE28_019420	COG0402	S-adenosylhomocysteine deaminase activity
ABE28_019425	COG0747	negative chemotaxis
ABE28_019430	COG0402	S-adenosylhomocysteine deaminase activity
ABE28_019435	COG0402	S-adenosylhomocysteine deaminase activity
ABE28_019440	COG0747	negative chemotaxis
ABE28_019455	COG0444	Belongs to the ABC transporter superfamily
ABE28_019460	COG4608	Belongs to the ABC transporter superfamily
ABE28_019465	COG3275	phosphorelay sensor kinase activity
ABE28_019470	COG2207	Transcriptional regulator
ABE28_019480	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ABE28_019500	COG2385	sporulation resulting in formation of a cellular spore
ABE28_019515	COG0655	NAD(P)H dehydrogenase (quinone) activity
ABE28_019520	COG1289	transmembrane transporter activity
ABE28_019525	COG0583	DNA-binding transcription factor activity
ABE28_019625	COG0583	DNA-binding transcription factor activity
ABE28_019635	COG0697	spore germination
ABE28_019640	COG0697	spore germination
ABE28_019645	COG1053	succinate dehydrogenase
ABE28_019650	COG0583	DNA-binding transcription factor activity
ABE28_019660	COG2851	Citrate transporter
ABE28_019665	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_019675	COG0662	Cupin 2, conserved barrel domain protein
ABE28_019705	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ABE28_019710	COG3773	Cell wall hydrolase
ABE28_019720	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ABE28_019725	COG1845	cytochrome c oxidase, subunit III
ABE28_019735	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ABE28_019795	COG4319	ketosteroid isomerase
ABE28_019870	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ABE28_019880	COG1522	sequence-specific DNA binding
ABE28_019895	COG1252	NADH dehydrogenase
ABE28_019905	COG0018	arginyl-trna synthetase
ABE28_019910	COG2197	response regulator
ABE28_019915	COG3239	Fatty acid desaturase
ABE28_019920	COG3858	chitin binding
ABE28_019925	COG0697	spore germination
ABE28_019930	COG3478	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
ABE28_019945	COG1309	transcriptional regulator
ABE28_019975	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
ABE28_019980	COG1131	(ABC) transporter
ABE28_019990	COG3583	domain protein
ABE28_019990	COG3584	3D domain protein
ABE28_020000	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ABE28_020020	COG2017	converts alpha-aldose to the beta-anomer
ABE28_020035	COG3250	beta-galactosidase activity
ABE28_020040	COG1609	Transcriptional regulator
ABE28_020045	COG0395	ABC-type sugar transport system, permease component
ABE28_020055	COG2182	Extracellular solute-binding protein
ABE28_020060	COG2368	4-hydroxyphenylacetate
ABE28_020065	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_020075	COG1114	Component of the transport system for branched-chain amino acids
ABE28_020090	COG1760	l-serine dehydratase
ABE28_020095	COG1760	l-serine dehydratase
ABE28_020100	COG2311	Membrane
ABE28_020105	COG2356	endonuclease I
ABE28_020110	COG0737	Belongs to the 5'-nucleotidase family
ABE28_020120	COG1119	ATPase activity
ABE28_020125	COG0697	spore germination
ABE28_020130	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABE28_020140	COG0789	Transcriptional regulator
ABE28_020140	COG4978	Transcriptional regulator
ABE28_020145	COG0456	acetyltransferase
ABE28_020160	COG1309	transcriptional regulator
ABE28_020175	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABE28_020180	COG0569	domain protein
ABE28_020185	COG1366	Belongs to the anti-sigma-factor antagonist family
ABE28_020200	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABE28_020205	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
ABE28_020205	COG0463	Glycosyl transferase, family 2
ABE28_020210	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ABE28_020215	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABE28_020220	COG2910	NAD(P)H-binding
ABE28_020225	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
ABE28_020235	COG1959	2 iron, 2 sulfur cluster binding
ABE28_020240	COG4193	domain, Protein
ABE28_020245	COG2112	serine threonine protein kinase
ABE28_020255	COG3832	glyoxalase III activity
ABE28_020260	COG0640	Transcriptional regulator
ABE28_020265	COG1511	domain protein
ABE28_020270	COG1959	2 iron, 2 sulfur cluster binding
ABE28_020275	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABE28_020290	COG4122	O-methyltransferase activity
ABE28_020320	COG0346	lactoylglutathione lyase activity
ABE28_020330	COG1846	Transcriptional regulator
ABE28_020335	COG2814	Major facilitator Superfamily
ABE28_020350	COG1131	(ABC) transporter
ABE28_020360	COG0702	epimerase
ABE28_020370	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
ABE28_020370	COG0456	acetyltransferase
ABE28_020400	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
ABE28_020405	COG0725	ABC transporter, periplasmic molybdate-binding protein
ABE28_020410	COG1910	domain protein
ABE28_020430	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
ABE28_020435	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
ABE28_020445	COG0612	Peptidase, M16
ABE28_020485	COG3104	oligopeptide transport
ABE28_020500	COG1595	DNA-templated transcription, initiation
ABE28_020505	COG0726	polysaccharide deacetylase
ABE28_020530	COG4548	von Willebrand factor, type A
ABE28_020535	COG0714	Associated with various cellular activities
ABE28_020540	COG0702	epimerase
ABE28_020545	COG5566	PFAM Mor transcription activator
ABE28_020555	COG1741	Belongs to the pirin family
ABE28_020570	COG0493	'glutamate synthase
ABE28_020575	COG0070	glutamate synthase
ABE28_020575	COG0069	glutamate synthase activity
ABE28_020575	COG0067	glutamate synthase
ABE28_020580	COG0583	DNA-binding transcription factor activity
ABE28_020610	COG1404	Belongs to the peptidase S8 family
ABE28_020615	COG0495	leucyl-tRNA aminoacylation
ABE28_020625	COG4282	regulation of fungal-type cell wall biogenesis
ABE28_020630	COG1242	4 iron, 4 sulfur cluster binding
ABE28_020635	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
ABE28_020645	COG2267	carboxylic ester hydrolase activity
ABE28_020650	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ABE28_020680	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ABE28_020685	COG5278	phosphoserine phosphatase activity
ABE28_020685	COG0840	transmembrane signaling receptor activity
ABE28_020705	COG1506	peptidase
ABE28_020710	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABE28_020715	COG0438	transferase activity, transferring glycosyl groups
ABE28_020730	COG1116	anion transmembrane transporter activity
ABE28_020735	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABE28_020740	COG0494	nUDIX hydrolase
ABE28_020755	COG0783	Belongs to the Dps family
ABE28_020760	COG1854	S-ribosylhomocysteine lyase activity
ABE28_020765	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
ABE28_020770	COG3443	Belongs to the bacterial solute-binding protein 9 family
ABE28_020770	COG0803	Belongs to the bacterial solute-binding protein 9 family
ABE28_020775	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
ABE28_020780	COG3290	protein histidine kinase activity
ABE28_020790	COG4948	Mandelate Racemase Muconate Lactonizing
ABE28_020795	COG0318	PFAM AMP-dependent synthetase and ligase
ABE28_020800	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
ABE28_020805	COG0596	Alpha beta hydrolase
ABE28_020810	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
ABE28_020815	COG1169	isochorismate synthase
ABE28_020820	COG1575	Belongs to the MenA family. Type 1 subfamily
ABE28_020825	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ABE28_020965	COG1285	pathogenesis
ABE28_020975	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABE28_020990	COG0506	proline dehydrogenase activity
ABE28_020995	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_021005	COG2508	Transcriptional regulator
ABE28_021010	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABE28_021015	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
ABE28_021020	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ABE28_021025	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
ABE28_021030	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
ABE28_021040	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
ABE28_021055	COG1994	Peptidase M50
ABE28_021060	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ABE28_021065	COG0833	amino acid
ABE28_021090	COG1472	Belongs to the glycosyl hydrolase 3 family
ABE28_021100	COG1378	Sugar-specific transcriptional regulator TrmB
ABE28_021115	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABE28_021120	COG0604	alcohol dehydrogenase
ABE28_021125	COG3773	Cell wall hydrolase
ABE28_021130	COG3906	Belongs to the UPF0473 family
ABE28_021135	COG0346	lactoylglutathione lyase activity
ABE28_021140	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ABE28_021145	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ABE28_021150	COG0523	cobalamin synthesis protein
ABE28_021155	COG0322	excinuclease ABC activity
ABE28_021165	COG1785	Belongs to the alkaline phosphatase family
ABE28_021170	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
ABE28_021185	COG0753	catalase activity
ABE28_021200	COG1950	PFAM Membrane protein of
ABE28_021205	COG2356	endonuclease I
ABE28_021210	COG1113	amino acid transport
ABE28_021220	COG0737	Belongs to the 5'-nucleotidase family
ABE28_021225	COG2318	DinB family
ABE28_021235	COG1191	sigma factor activity
ABE28_021250	COG3328	transposase activity
ABE28_021270	COG2814	Major facilitator Superfamily
ABE28_021275	COG0531	amino acid
ABE28_021280	COG1968	undecaprenyl-diphosphatase activity
ABE28_021285	COG0584	glycerophosphoryl diester phosphodiesterase
ABE28_021295	COG3858	chitin binding
ABE28_021295	COG1388	LysM domain
ABE28_021300	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABE28_021315	COG0166	Belongs to the GPI family
ABE28_021320	COG1979	alcohol dehydrogenase
ABE28_021325	COG2155	Conserved Protein
ABE28_021330	COG1098	S1 RNA binding domain
ABE28_021340	COG0436	Aminotransferase
ABE28_021345	COG1522	sequence-specific DNA binding
ABE28_021350	COG2267	carboxylic ester hydrolase activity
ABE28_021360	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
ABE28_021375	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_021380	COG1120	ATPase activity
ABE28_021385	COG0748	coenzyme F420 binding
ABE28_021410	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ABE28_021425	COG0456	acetyltransferase
ABE28_021435	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABE28_021445	COG5018	Exonuclease
ABE28_021450	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABE28_021465	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABE28_021465	COG2111	Na H antiporter
ABE28_021470	COG2111	Na H antiporter
ABE28_021475	COG1006	Multisubunit Na H antiporter MnhC subunit
ABE28_021480	COG0651	ATP synthesis coupled electron transport
ABE28_021485	COG1863	multisubunit Na H antiporter MnhE subunit
ABE28_021490	COG2212	antiporter activity
ABE28_021505	COG2050	protein possibly involved in aromatic compounds catabolism
ABE28_021520	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABE28_021520	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABE28_021525	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ABE28_021525	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ABE28_021535	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ABE28_021540	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
ABE28_021550	COG3584	3D domain protein
ABE28_021565	COG1252	NADH dehydrogenase
ABE28_021570	COG0492	ferredoxin-NADP+ reductase activity
ABE28_021580	COG0316	Belongs to the HesB IscA family
ABE28_021590	COG4844	belongs to the
ABE28_021595	COG1252	NADH dehydrogenase
ABE28_021600	COG4837	Protein of unknown function (DUF1462)
ABE28_021605	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
ABE28_021610	COG0083	homoserine kinase activity
ABE28_021615	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ABE28_021620	COG0460	homoserine dehydrogenase
ABE28_021630	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ABE28_021635	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ABE28_021640	COG2801	Transposase and inactivated derivatives
ABE28_021650	COG0647	UMP catabolic process
ABE28_021655	COG2445	Protein of unknown function DUF86
ABE28_021670	COG4470	Protein conserved in bacteria
ABE28_021680	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ABE28_021685	COG0739	heme binding
ABE28_021700	COG3377	Domain of unknown function (DUF1805)
ABE28_021705	COG0737	Belongs to the 5'-nucleotidase family
ABE28_021710	COG0730	response to heat
ABE28_021715	COG1801	Protein of unknown function DUF72
ABE28_021725	COG0719	Fe-S assembly protein
ABE28_021730	COG0822	iron-sulfur transferase activity
ABE28_021735	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ABE28_021740	COG0719	Fe-S assembly protein
ABE28_021745	COG0396	ATPase activity
ABE28_021760	COG2801	Transposase and inactivated derivatives
ABE28_021765	COG1464	Belongs to the NlpA lipoprotein family
ABE28_021770	COG2011	ABC-type metal ion transport system permease component
ABE28_021775	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABE28_021785	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ABE28_021790	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
ABE28_021795	COG0509	glycine decarboxylation via glycine cleavage system
ABE28_021800	COG1393	Belongs to the ArsC family
ABE28_021805	COG1960	acyl-CoA dehydrogenase activity
ABE28_021810	COG0183	Belongs to the thiolase family
ABE28_021815	COG1024	Enoyl-CoA hydratase
ABE28_021815	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABE28_021835	COG5577	PFAM Coat F domain
ABE28_021845	COG0772	Belongs to the SEDS family
ABE28_021850	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABE28_021855	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABE28_021855	COG1321	iron dependent repressor
ABE28_021860	COG1121	(ABC) transporter
ABE28_021865	COG0803	Belongs to the bacterial solute-binding protein 9 family
ABE28_021870	COG1609	Transcriptional regulator
ABE28_021875	COG0833	amino acid
ABE28_021925	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABE28_021930	COG1368	sulfuric ester hydrolase activity
ABE28_021935	COG4607	ABC-type enterochelin transport system periplasmic component
ABE28_021940	COG4604	ABC transporter, ATP-binding protein
ABE28_021945	COG4605	iron ion homeostasis
ABE28_021950	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_021965	COG1657	PFAM Prenyltransferase squalene oxidase
ABE28_021990	COG3850	Histidine kinase
ABE28_021990	COG5002	protein histidine kinase activity
ABE28_021995	COG0745	RESPONSE REGULATOR receiver
ABE28_022000	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABE28_022005	COG2197	response regulator
ABE28_022010	COG4585	Histidine kinase
ABE28_022020	COG0583	DNA-binding transcription factor activity
ABE28_022025	COG5609	conserved protein (DUF2294)
ABE28_022030	COG3383	formate dehydrogenase (NAD+) activity
ABE28_022035	COG2427	Protein of unknown function (DUF1641)
ABE28_022075	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ABE28_022080	COG0557	exoribonuclease II activity
ABE28_022085	COG1647	Serine aminopeptidase, S33
ABE28_022090	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ABE28_022100	COG1876	peptidase activity
ABE28_022130	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
ABE28_022140	COG0126	phosphoglycerate kinase activity
ABE28_022145	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ABE28_022160	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
ABE28_022170	COG0740	serine-type endopeptidase activity
ABE28_022175	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABE28_022185	COG0391	Required for morphogenesis under gluconeogenic growth conditions
ABE28_022190	COG1660	Displays ATPase and GTPase activities
ABE28_022195	COG1051	belongs to the nudix hydrolase family
ABE28_022200	COG0492	ferredoxin-NADP+ reductase activity
ABE28_022205	COG0457	Tetratricopeptide repeat
ABE28_022210	COG1012	belongs to the aldehyde dehydrogenase family
ABE28_022215	COG0140	phosphoribosyl-ATP diphosphatase activity
ABE28_022215	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ABE28_022220	COG0107	imidazoleglycerol-phosphate synthase activity
ABE28_022225	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
ABE28_022230	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ABE28_022235	COG0131	Imidazoleglycerol-phosphate dehydratase
ABE28_022240	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ABE28_022245	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ABE28_022250	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
ABE28_022260	COG3764	Sortase (surface protein transpeptidase)
ABE28_022265	COG0110	maltose O-acetyltransferase activity
ABE28_022270	COG0546	phosphoglycolate phosphatase activity
ABE28_022275	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
ABE28_022280	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ABE28_022290	COG5646	InterPro IPR014922
ABE28_022295	COG3595	metallopeptidase activity
ABE28_022300	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ABE28_022305	COG0556	nucleotide-excision repair
ABE28_022310	COG4897	Protein conserved in bacteria
ABE28_022315	COG0753	catalase activity
ABE28_022325	COG2353	YceI-like domain
ABE28_022330	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_022335	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_022340	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_022345	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABE28_022350	COG3409	Peptidoglycan-binding domain 1 protein
ABE28_022350	COG0793	Belongs to the peptidase S41A family
ABE28_022355	COG0791	NLP P60 protein
ABE28_022355	COG3883	PFAM NLP P60 protein
ABE28_022360	COG2177	Part of the ABC transporter FtsEX involved in
ABE28_022365	COG2884	Cell division ATP-binding protein ftsE
ABE28_022375	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ABE28_022380	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ABE28_022385	COG0653	protein targeting
ABE28_022390	COG1396	sequence-specific DNA binding
ABE28_022400	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
ABE28_022410	COG1516	flagellar protein fliS
ABE28_022415	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
ABE28_022420	COG1334	flagellar protein FlaG
ABE28_022435	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
ABE28_022440	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
ABE28_022450	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ABE28_022455	COG4786	Flagellar basal body rod
ABE28_022455	COG1256	bacterial-type flagellum assembly
ABE28_022465	COG2747	anti-sigma28 factor FlgM
ABE28_022475	COG1040	competence protein
ABE28_022485	COG1307	EDD domain protein, DegV family
ABE28_022490	COG2197	response regulator
ABE28_022495	COG4585	Histidine kinase
ABE28_022500	COG1739	Uncharacterized protein family UPF0029
ABE28_022505	COG1316	TRANSCRIPTIONal
ABE28_022510	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABE28_022515	COG0438	transferase activity, transferring glycosyl groups
ABE28_022530	COG0728	peptidoglycan biosynthetic process
ABE28_022535	COG0438	transferase activity, transferring glycosyl groups
ABE28_022540	COG1134	teichoic acid transport
ABE28_022545	COG1682	transport, permease protein
ABE28_022550	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
ABE28_022555	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
ABE28_022560	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
ABE28_022565	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
ABE28_022570	COG1388	LysM domain
ABE28_022570	COG0791	NLP P60 protein
ABE28_022580	COG1368	sulfuric ester hydrolase activity
ABE28_022590	COG0653	protein targeting
ABE28_022595	COG1511	domain protein
ABE28_022595	COG1511	domain protein
ABE28_022600	COG1785	Belongs to the alkaline phosphatase family
ABE28_022605	COG2247	cell wall binding repeat
ABE28_022605	COG2385	sporulation resulting in formation of a cellular spore
ABE28_022610	COG0768	penicillin binding
ABE28_022630	COG4715	Zinc finger, swim domain protein
ABE28_022635	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ABE28_022640	COG1279	arginine transmembrane transporter activity
ABE28_022645	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABE28_022675	COG0747	negative chemotaxis
ABE28_022680	COG4608	Belongs to the ABC transporter superfamily
ABE28_022685	COG0444	Belongs to the ABC transporter superfamily
ABE28_022695	COG0629	single-stranded DNA binding
ABE28_022720	COG4786	Flagellar basal body rod
ABE28_022725	COG4786	Flagellar basal body rod
ABE28_022730	COG1077	Cell shape determining protein MreB Mrl
ABE28_022735	COG1609	Transcriptional regulator
ABE28_022740	COG0739	heme binding
ABE28_022750	COG2385	sporulation resulting in formation of a cellular spore
ABE28_022765	COG4836	Membrane
ABE28_022770	COG1007	ATP synthesis coupled electron transport
ABE28_022775	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABE28_022780	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABE28_022785	COG0713	ATP synthesis coupled electron transport
ABE28_022795	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABE28_022805	COG0649	NAD binding
ABE28_022810	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABE28_022815	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABE28_022820	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABE28_022830	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
ABE28_022835	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
ABE28_022845	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ABE28_022855	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ABE28_022860	COG0356	it plays a direct role in the translocation of protons across the membrane
ABE28_022870	COG1404	Belongs to the peptidase S8 family
ABE28_022875	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ABE28_022880	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
ABE28_022895	COG0698	ribose 5-phosphate isomerase
ABE28_022900	COG0840	transmembrane signaling receptor activity
ABE28_022910	COG1971	Probably functions as a manganese efflux pump
ABE28_022915	COG0009	L-threonylcarbamoyladenylate synthase
ABE28_022925	COG2890	protein-(glutamine-N5) methyltransferase activity
ABE28_022930	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
ABE28_022940	COG1435	thymidine kinase activity
ABE28_022950	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ABE28_022955	COG1494	fructose-1,6-bisphosphatase
ABE28_022960	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ABE28_022965	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ABE28_022975	COG2204	response regulator
ABE28_022980	COG4821	SIS domain
ABE28_022985	COG0504	CTP synthase activity
ABE28_022990	COG3343	RNA polymerase activity
ABE28_022995	COG1703	isobutyryl-CoA mutase activity
ABE28_022995	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
ABE28_022995	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
ABE28_023005	COG1960	acyl-CoA dehydrogenase activity
ABE28_023010	COG1960	acyl-CoA dehydrogenase activity
ABE28_023015	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABE28_023020	COG0183	Belongs to the thiolase family
ABE28_023025	COG0247	lactate metabolic process
ABE28_023025	COG2181	nitrate reductase activity
ABE28_023030	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABE28_023035	COG4294	response to UV
ABE28_023040	COG0018	arginyl-trna synthetase
ABE28_023045	COG4506	Protein conserved in bacteria
ABE28_023050	COG0010	Belongs to the arginase family
ABE28_023055	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
ABE28_023060	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABE28_023070	COG1994	Peptidase M50
ABE28_023080	COG3465	dGTPase activity
ABE28_023085	COG1078	dGTPase activity
ABE28_023100	COG0095	Lipoate-protein ligase
ABE28_023105	COG0280	phosphate acetyltransferase
ABE28_023120	COG2363	Small membrane protein
ABE28_023130	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
ABE28_023145	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ABE28_023150	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
ABE28_023155	COG0314	molybdopterin synthase activity
ABE28_023160	COG0746	molybdenum cofactor guanylyltransferase activity
ABE28_023165	COG0351	phosphomethylpyrimidine kinase
ABE28_023170	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
ABE28_023180	COG2814	Major facilitator Superfamily
ABE28_023185	COG1846	Transcriptional regulator
ABE28_023195	COG0561	phosphatase activity
ABE28_023205	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ABE28_023225	COG2096	Adenosyltransferase
ABE28_023240	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
ABE28_023250	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ABE28_023255	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ABE28_023260	COG1120	ATPase activity
ABE28_023265	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABE28_023270	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ABE28_023275	COG0726	polysaccharide deacetylase
ABE28_023300	COG1131	(ABC) transporter
ABE28_023325	COG0488	(ABC) transporter
ABE28_023350	COG2252	PERMEase
ABE28_023365	COG0723	plastoquinol--plastocyanin reductase activity
ABE28_023365	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABE28_023370	COG4895	conserved protein (DUF2196)
ABE28_023380	COG0788	formyltetrahydrofolate deformylase activity
ABE28_023400	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABE28_023415	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABE28_023420	COG1366	Belongs to the anti-sigma-factor antagonist family
ABE28_023425	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABE28_023425	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ABE28_023430	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
ABE28_023440	COG5002	protein histidine kinase activity
ABE28_023445	COG0745	RESPONSE REGULATOR receiver
ABE28_023450	COG0577	efflux transmembrane transporter activity
ABE28_023450	COG1136	(ABC) transporter
ABE28_023455	COG1136	(ABC) transporter
ABE28_023470	COG3162	membrane
ABE28_023475	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABE28_023500	COG2267	carboxylic ester hydrolase activity
ABE28_023505	COG1301	dicarboxylic acid transport
ABE28_023515	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ABE28_023525	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABE28_023530	COG1879	ABC-type sugar transport system periplasmic component
ABE28_023535	COG1172	Belongs to the binding-protein-dependent transport system permease family
ABE28_023540	COG1129	ABC transporter
ABE28_023545	COG1869	D-ribose catabolic process
ABE28_023550	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABE28_023555	COG1609	Transcriptional regulator
ABE28_023575	COG4264	IucA IucC family
ABE28_023580	COG0076	glutamate decarboxylase activity
ABE28_023600	COG5337	Spore coat protein CotH
ABE28_023610	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABE28_023615	COG0753	catalase activity
ABE28_023615	COG0693	protein deglycase activity
ABE28_023630	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ABE28_023635	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
ABE28_023640	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABE28_023645	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
ABE28_023650	COG4853	Protein conserved in bacteria
ABE28_023660	COG5002	protein histidine kinase activity
ABE28_023665	COG0745	RESPONSE REGULATOR receiver
ABE28_023670	COG0741	lytic transglycosylase activity
ABE28_023670	COG1196	nuclear chromosome segregation
ABE28_023670	COG0739	heme binding
ABE28_023700	COG0305	Participates in initiation and elongation during chromosome replication
ABE28_023705	COG0359	binds to the 23S rRNA
ABE28_023710	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
ABE28_023720	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
ABE28_023725	COG0629	single-stranded DNA binding
ABE28_023730	COG0360	Binds together with S18 to 16S ribosomal RNA
ABE28_023735	COG0012	GTP binding
ABE28_023740	COG4481	Protein conserved in bacteria
ABE28_023745	COG0668	transmembrane transport
ABE28_023760	COG1475	DNA binding
ABE28_023765	COG1192	Involved in chromosome partitioning
ABE28_023770	COG1475	DNA binding
ABE28_023775	COG0357	Ribosomal RNA small subunit methyltransferase G
ABE28_023780	COG0445	tRNA wobble uridine modification
ABE28_023790	COG1847	R3H domain protein
ABE28_023795	COG0706	membrane insertase activity
ABE28_023800	COG0594	ribonuclease P activity
ABE28_023805	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ABE28_023810	COG0592	DNA-directed DNA polymerase activity
ABE28_023815	COG2501	S4 domain
ABE28_023820	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ABE28_023830	COG0187	DNA topoisomerase II activity
ABE28_023835	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
ABE28_023840	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ABE28_023870	COG1028	Short-chain dehydrogenase reductase Sdr
ABE28_023890	COG4221	oxidoreductase activity
ABE28_023910	COG2814	Major facilitator Superfamily
ABE28_023915	COG2723	6-phospho-beta-galactosidase activity
ABE28_023920	COG2190	(PTS) system
ABE28_023920	COG1263	PTS System
ABE28_023920	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ABE28_023925	COG0583	DNA-binding transcription factor activity
ABE28_023930	COG2268	Band 7 protein
ABE28_023935	COG1585	Membrane protein implicated in regulation of membrane protease activity
ABE28_023940	COG1268	BioY protein
ABE28_023950	COG1272	protein, Hemolysin III
ABE28_023955	COG0640	Transcriptional regulator
ABE28_023970	COG1137	ATPase activity
ABE28_023990	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
ABE28_023990	COG0456	acetyltransferase
ABE28_024015	COG1396	sequence-specific DNA binding
ABE28_024020	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABE28_024020	COG2169	Transcriptional regulator
ABE28_024025	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
ABE28_024035	COG2226	methyltransferase
ABE28_024050	COG2312	Erythromycin esterase
ABE28_024065	COG0519	Catalyzes the synthesis of GMP from XMP
ABE28_024110	COG2814	Major facilitator Superfamily
ABE28_024130	COG1733	regulation of RNA biosynthetic process
ABE28_024140	COG0431	NADPH-dependent FMN reductase
ABE28_024150	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABE28_024165	COG1181	Belongs to the D-alanine--D-alanine ligase family
ABE28_024170	COG0500	methyltransferase
ABE28_024210	COG2318	DinB family
ABE28_024240	COG2890	protein-(glutamine-N5) methyltransferase activity