locus-tag class description LMD38_00005 PF04542 Sigma-70 region 2 LMD38_00005 PF08281 Sigma-70, region 4 LMD38_00025 PF04389 Peptidase family M28 LMD38_00025 PF02225 PA domain LMD38_00035 PF00557 Metallopeptidase family M24 LMD38_00040 PF00005 ABC transporter LMD38_00050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_00050 PF07730 Histidine kinase LMD38_00055 PF00196 Bacterial regulatory proteins, luxR family LMD38_00055 PF00072 Response regulator receiver domain LMD38_00075 PF00563 EAL domain LMD38_00075 PF00990 Diguanylate cyclase, GGDEF domain LMD38_00075 PF03707 Bacterial signalling protein N terminal repeat LMD38_00080 PF03851 UV-endonuclease UvdE LMD38_00085 PF13091 PLD-like domain LMD38_00090 PF13183 4Fe-4S dicluster domain LMD38_00090 PF02754 Cysteine-rich domain LMD38_00100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LMD38_00100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LMD38_00105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LMD38_00105 PF02770 Acyl-CoA dehydrogenase, middle domain LMD38_00105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LMD38_00110 PF02770 Acyl-CoA dehydrogenase, middle domain LMD38_00110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LMD38_00110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LMD38_00120 PF05066 HB1, ASXL, restriction endonuclease HTH domain LMD38_00125 PF06418 CTP synthase N-terminus LMD38_00125 PF00117 Glutamine amidotransferase class-I LMD38_00130 PF00226 DnaJ domain LMD38_00130 PF01556 DnaJ C terminal domain LMD38_00130 PF00684 DnaJ central domain LMD38_00135 PF10740 Domain of unknown function (DUF2529) LMD38_00140 PF00072 Response regulator receiver domain LMD38_00145 PF01116 Fructose-bisphosphate aldolase class-II LMD38_00150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LMD38_00155 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LMD38_00160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LMD38_00160 PF07498 Rho termination factor, N-terminal domain LMD38_00160 PF07497 Rho termination factor, RNA-binding domain LMD38_00170 PF01197 Ribosomal protein L31 LMD38_00175 PF00265 Thymidine kinase LMD38_00180 PF00472 RF-1 domain LMD38_00180 PF03462 PCRF domain LMD38_00185 PF17827 PrmC N-terminal domain LMD38_00185 PF13847 Methyltransferase domain LMD38_00190 PF09551 Stage II sporulation protein R (spore_II_R) LMD38_00200 PF03481 Putative GTP-binding controlling metal-binding LMD38_00200 PF01300 Telomere recombination LMD38_00205 PF02659 Putative manganese efflux pump LMD38_00220 PF01613 Flavin reductase like domain LMD38_00225 PF07681 DoxX LMD38_00230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LMD38_00235 PF01451 Low molecular weight phosphotyrosine protein phosphatase LMD38_00240 PF02502 Ribose/Galactose Isomerase LMD38_00245 PF04260 Protein of unknown function (DUF436) LMD38_00250 PF00464 Serine hydroxymethyltransferase LMD38_00270 PF03899 ATP synthase I chain LMD38_00275 PF00119 ATP synthase A chain LMD38_00280 PF00137 ATP synthase subunit C LMD38_00285 PF00430 ATP synthase B/B' CF(0) LMD38_00290 PF00213 ATP synthase delta (OSCP) subunit LMD38_00295 PF02874 ATP synthase alpha/beta family, beta-barrel domain LMD38_00295 PF00306 ATP synthase alpha/beta chain, C terminal domain LMD38_00295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LMD38_00300 PF00231 ATP synthase LMD38_00305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LMD38_00305 PF02874 ATP synthase alpha/beta family, beta-barrel domain LMD38_00310 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LMD38_00310 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LMD38_00325 PF00990 Diguanylate cyclase, GGDEF domain LMD38_00325 PF03707 Bacterial signalling protein N terminal repeat LMD38_00325 PF00563 EAL domain LMD38_00330 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LMD38_00335 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LMD38_00340 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LMD38_00345 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LMD38_00350 PF00146 NADH dehydrogenase LMD38_00360 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LMD38_00365 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LMD38_00370 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LMD38_00370 PF00361 Proton-conducting membrane transporter LMD38_00370 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus LMD38_00375 PF00361 Proton-conducting membrane transporter LMD38_00380 PF00361 Proton-conducting membrane transporter LMD38_00385 PF06612 Protein of unknown function (DUF1146) LMD38_00395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LMD38_00400 PF08486 Stage II sporulation protein LMD38_00405 PF00072 Response regulator receiver domain LMD38_00405 PF04397 LytTr DNA-binding domain LMD38_00410 PF00005 ABC transporter LMD38_00420 PF01551 Peptidase family M23 LMD38_00430 PF12116 Stage III sporulation protein D LMD38_00440 PF07977 FabA-like domain LMD38_00445 PF13614 AAA domain LMD38_00450 PF02706 Chain length determinant protein LMD38_00450 PF13807 G-rich domain on putative tyrosine kinase LMD38_00455 PF13614 AAA domain LMD38_00465 PF00483 Nucleotidyl transferase LMD38_00470 PF02397 Bacterial sugar transferase LMD38_00475 PF00535 Glycosyl transferase family 2 LMD38_00485 PF00534 Glycosyl transferases group 1 LMD38_00485 PF13439 Glycosyltransferase Family 4 LMD38_00495 PF00483 Nucleotidyl transferase LMD38_00495 PF01050 Mannose-6-phosphate isomerase LMD38_00500 PF01238 Phosphomannose isomerase type I LMD38_00505 PF03816 Cell envelope-related transcriptional attenuator domain LMD38_00515 PF04991 LicD family LMD38_00535 PF00892 EamA-like transporter family LMD38_00540 PF12804 MobA-like NTP transferase domain LMD38_00545 PF16363 GDP-mannose 4,6 dehydratase LMD38_00550 PF16363 GDP-mannose 4,6 dehydratase LMD38_00555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LMD38_00555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LMD38_00555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LMD38_00555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LMD38_00560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LMD38_00560 PF05043 Mga helix-turn-helix domain LMD38_00560 PF08279 HTH domain LMD38_00560 PF00874 PRD domain LMD38_00565 PF02378 Phosphotransferase system, EIIC LMD38_00565 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LMD38_00565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LMD38_00570 PF01238 Phosphomannose isomerase type I LMD38_00575 PF00486 Transcriptional regulatory protein, C terminal LMD38_00575 PF00072 Response regulator receiver domain LMD38_00580 PF00512 His Kinase A (phospho-acceptor) domain LMD38_00580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_00580 PF00672 HAMP domain LMD38_00595 PF07690 Major Facilitator Superfamily LMD38_00605 PF00005 ABC transporter LMD38_00610 PF02687 FtsX-like permease family LMD38_00610 PF12704 MacB-like periplasmic core domain LMD38_00615 PF04893 Yip1 domain LMD38_00620 PF04893 Yip1 domain LMD38_00625 PF04542 Sigma-70 region 2 LMD38_00625 PF04545 Sigma-70, region 4 LMD38_00655 PF12419 SNF2 Helicase protein LMD38_00655 PF00271 Helicase conserved C-terminal domain LMD38_00655 PF00176 SNF2 family N-terminal domain LMD38_00660 PF04434 SWIM zinc finger LMD38_00685 PF01476 LysM domain LMD38_00685 PF06725 3D domain LMD38_00690 PF02028 BCCT, betaine/carnitine/choline family transporter LMD38_00705 PF07662 Na+ dependent nucleoside transporter C-terminus LMD38_00705 PF01773 Na+ dependent nucleoside transporter N-terminus LMD38_00710 PF01476 LysM domain LMD38_00710 PF00877 NlpC/P60 family LMD38_00715 PF01063 Amino-transferase class IV LMD38_00720 PF00884 Sulfatase LMD38_00730 PF09988 Uncharacterized metal-binding protein (DUF2227) LMD38_00740 PF02652 L-lactate permease LMD38_00750 PF13667 ThiC-associated domain LMD38_00750 PF01964 Radical SAM ThiC family LMD38_00755 PF02040 Arsenical pump membrane protein LMD38_00760 PF02322 Cytochrome bd terminal oxidase subunit II LMD38_00765 PF01654 Cytochrome bd terminal oxidase subunit I LMD38_00780 PF03466 LysR substrate binding domain LMD38_00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_00805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_00815 PF00375 Sodium:dicarboxylate symporter family LMD38_00820 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LMD38_00825 PF02378 Phosphotransferase system, EIIC LMD38_00830 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LMD38_00845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LMD38_00850 PF02378 Phosphotransferase system, EIIC LMD38_00855 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LMD38_00860 PF11975 Family 4 glycosyl hydrolase C-terminal domain LMD38_00860 PF02056 Family 4 glycosyl hydrolase LMD38_00865 PF04794 YdjC-like protein LMD38_00870 PF02417 Chromate transporter LMD38_00880 PF00158 Sigma-54 interaction domain LMD38_00880 PF03610 PTS system fructose IIA component LMD38_00880 PF00874 PRD domain LMD38_00885 PF01522 Polysaccharide deacetylase LMD38_00890 PF00953 Glycosyl transferase family 4 LMD38_00895 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LMD38_00895 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LMD38_00895 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LMD38_00900 PF02350 UDP-N-acetylglucosamine 2-epimerase LMD38_00905 PF03816 Cell envelope-related transcriptional attenuator domain LMD38_00910 PF01205 Uncharacterized protein family UPF0029 LMD38_00910 PF09186 Domain of unknown function (DUF1949) LMD38_00915 PF02645 Uncharacterised protein, DegV family COG1307 LMD38_00920 PF01638 HxlR-like helix-turn-helix LMD38_00925 PF00877 NlpC/P60 family LMD38_00925 PF01476 LysM domain LMD38_00930 PF00271 Helicase conserved C-terminal domain LMD38_00930 PF04851 Type III restriction enzyme, res subunit LMD38_00940 PF00313 'Cold-shock' DNA-binding domain LMD38_00945 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LMD38_00945 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LMD38_00975 PF00005 ABC transporter LMD38_00985 PF02810 SEC-C motif LMD38_00985 PF07517 SecA DEAD-like domain LMD38_00985 PF01043 SecA preprotein cross-linking domain LMD38_00985 PF07516 SecA Wing and Scaffold domain LMD38_00995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LMD38_01000 PF00005 ABC transporter LMD38_01005 PF02687 FtsX-like permease family LMD38_01005 PF18075 FtsX extracellular domain LMD38_01010 PF01471 Putative peptidoglycan binding domain LMD38_01010 PF03572 Peptidase family S41 LMD38_01010 PF17820 PDZ domain LMD38_01015 PF17820 PDZ domain LMD38_01025 PF01906 Putative heavy-metal-binding LMD38_01030 PF00005 ABC transporter LMD38_01030 PF12848 ABC transporter LMD38_01035 PF03358 NADPH-dependent FMN reductase LMD38_01040 PF00376 MerR family regulatory protein LMD38_01040 PF09278 MerR, DNA binding LMD38_01045 PF03466 LysR substrate binding domain LMD38_01045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_01050 PF03601 Conserved hypothetical protein 698 LMD38_01075 PF07739 TipAS antibiotic-recognition domain LMD38_01075 PF13411 MerR HTH family regulatory protein LMD38_01100 PF02151 UvrB/uvrC motif LMD38_01100 PF00271 Helicase conserved C-terminal domain LMD38_01100 PF12344 Ultra-violet resistance protein B LMD38_01100 PF17757 UvrB interaction domain LMD38_01100 PF04851 Type III restriction enzyme, res subunit LMD38_01105 PF17760 UvrA interaction domain LMD38_01105 PF00005 ABC transporter LMD38_01105 PF17755 UvrA DNA-binding domain LMD38_01120 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV LMD38_01125 PF07475 HPr Serine kinase C-terminal domain LMD38_01125 PF02603 HPr Serine kinase N terminus LMD38_01130 PF01790 Prolipoprotein diacylglyceryl transferase LMD38_01135 PF13419 Haloacid dehalogenase-like hydrolase LMD38_01140 PF14602 Hexapeptide repeat of succinyl-transferase LMD38_01150 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_01160 PF00293 NUDIX domain LMD38_01165 PF03668 P-loop ATPase protein family LMD38_01170 PF01933 Uncharacterised protein family UPF0052 LMD38_01175 PF10298 WhiA N-terminal LAGLIDADG-like domain LMD38_01175 PF02650 WhiA C-terminal HTH domain LMD38_01175 PF14527 WhiA LAGLIDADG-like domain LMD38_01180 PF00381 PTS HPr component phosphorylation site LMD38_01185 PF00574 Clp protease LMD38_01190 PF04239 Protein of unknown function (DUF421) LMD38_01200 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LMD38_01205 PF07451 Stage V sporulation protein AD (SpoVAD) LMD38_01210 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LMD38_01240 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_01240 PF00589 Phage integrase family LMD38_01290 PF00309 Sigma-54 factor, Activator interacting domain (AID) LMD38_01290 PF04552 Sigma-54, DNA binding domain LMD38_01290 PF04963 Sigma-54 factor, core binding domain LMD38_01300 PF04198 Putative sugar-binding domain LMD38_01305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LMD38_01305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LMD38_01310 PF00162 Phosphoglycerate kinase LMD38_01315 PF00121 Triosephosphate isomerase LMD38_01320 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LMD38_01320 PF01676 Metalloenzyme superfamily LMD38_01325 PF00113 Enolase, C-terminal TIM barrel domain LMD38_01325 PF03952 Enolase, N-terminal domain LMD38_01330 PF01156 Inosine-uridine preferring nucleoside hydrolase LMD38_01335 PF03788 LrgA family LMD38_01340 PF04172 LrgB-like family LMD38_01345 PF03840 Preprotein translocase SecG subunit LMD38_01350 PF12146 Serine aminopeptidase, S33 LMD38_01355 PF00575 S1 RNA binding domain LMD38_01355 PF00773 RNB domain LMD38_01355 PF08206 Ribonuclease B OB domain LMD38_01355 PF17876 Cold shock domain LMD38_01360 PF01668 SmpB protein LMD38_01370 PF00486 Transcriptional regulatory protein, C terminal LMD38_01370 PF00072 Response regulator receiver domain LMD38_01380 PF01032 FecCD transport family LMD38_01385 PF01032 FecCD transport family LMD38_01390 PF00005 ABC transporter LMD38_01400 PF06146 Phosphate-starvation-inducible E LMD38_01405 PF07457 Protein of unknown function (DUF1516) LMD38_01410 PF07690 Major Facilitator Superfamily LMD38_01420 PF13302 Acetyltransferase (GNAT) domain LMD38_01435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LMD38_01440 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LMD38_01450 PF00672 HAMP domain LMD38_01450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_01450 PF17202 Single cache domain 3 LMD38_01460 PF01565 FAD binding domain LMD38_01460 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LMD38_01465 PF00579 tRNA synthetases class I (W and Y) LMD38_01465 PF01479 S4 domain LMD38_01470 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_01475 PF07849 Protein of unknown function (DUF1641) LMD38_01480 PF01638 HxlR-like helix-turn-helix LMD38_01485 PF07690 Major Facilitator Superfamily LMD38_01490 PF00248 Aldo/keto reductase family LMD38_01505 PF13460 NAD(P)H-binding LMD38_01510 PF01235 Sodium:alanine symporter family LMD38_01515 PF01235 Sodium:alanine symporter family LMD38_01520 PF01773 Na+ dependent nucleoside transporter N-terminus LMD38_01520 PF07662 Na+ dependent nucleoside transporter C-terminus LMD38_01525 PF07662 Na+ dependent nucleoside transporter C-terminus LMD38_01525 PF01773 Na+ dependent nucleoside transporter N-terminus LMD38_01535 PF00210 Ferritin-like domain LMD38_01545 PF03641 Possible lysine decarboxylase LMD38_01560 PF00210 Ferritin-like domain LMD38_01565 PF01235 Sodium:alanine symporter family LMD38_01570 PF02080 TrkA-C domain LMD38_01575 PF00999 Sodium/hydrogen exchanger family LMD38_01585 PF01047 MarR family LMD38_01590 PF17954 Quercetinase C-terminal cupin domain LMD38_01590 PF02678 Pirin LMD38_01595 PF07504 Fungalysin/Thermolysin Propeptide Motif LMD38_01595 PF03413 Peptidase propeptide and YPEB domain LMD38_01595 PF01447 Thermolysin metallopeptidase, catalytic domain LMD38_01595 PF02868 Thermolysin metallopeptidase, alpha-helical domain LMD38_01600 PF01883 Iron-sulfur cluster assembly protein LMD38_01605 PF02743 Cache domain LMD38_01605 PF00672 HAMP domain LMD38_01605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_01610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_01610 PF02743 Cache domain LMD38_01610 PF00672 HAMP domain LMD38_01620 PF08264 Anticodon-binding domain of tRNA LMD38_01620 PF09334 tRNA synthetases class I (M) LMD38_01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_01635 PF00512 His Kinase A (phospho-acceptor) domain LMD38_01635 PF00989 PAS fold LMD38_01635 PF16736 Single Cache-like LMD38_01640 PF00072 Response regulator receiver domain LMD38_01640 PF00486 Transcriptional regulatory protein, C terminal LMD38_01645 PF03734 L,D-transpeptidase catalytic domain LMD38_01645 PF17969 L,D-transpeptidase C-terminal domain LMD38_01655 PF09335 SNARE associated Golgi protein LMD38_01680 PF00005 ABC transporter LMD38_01690 PF12679 ABC-2 family transporter protein LMD38_01695 PF00486 Transcriptional regulatory protein, C terminal LMD38_01695 PF00072 Response regulator receiver domain LMD38_01700 PF13426 PAS domain LMD38_01700 PF00512 His Kinase A (phospho-acceptor) domain LMD38_01700 PF00672 HAMP domain LMD38_01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_01710 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_01710 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_01720 PF02096 60Kd inner membrane protein LMD38_01735 PF13520 Amino acid permease LMD38_01740 PF07690 Major Facilitator Superfamily LMD38_01755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_01755 PF02743 Cache domain LMD38_01755 PF00672 HAMP domain LMD38_01760 PF01910 Thiamine-binding protein LMD38_01765 PF10835 Protein of unknown function (DUF2573) LMD38_01770 PF01619 Proline dehydrogenase LMD38_01775 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_01775 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_01780 PF14115 YuzL-like protein LMD38_01785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LMD38_01785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LMD38_01785 PF00378 Enoyl-CoA hydratase/isomerase LMD38_01790 PF02803 Thiolase, C-terminal domain LMD38_01790 PF00108 Thiolase, N-terminal domain LMD38_01795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LMD38_01795 PF02770 Acyl-CoA dehydrogenase, middle domain LMD38_01795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LMD38_01800 PF00753 Metallo-beta-lactamase superfamily LMD38_01805 PF13305 Tetracyclin repressor-like, C-terminal domain LMD38_01805 PF00440 Bacterial regulatory proteins, tetR family LMD38_01815 PF01381 Helix-turn-helix LMD38_01815 PF08671 Anti-repressor SinI LMD38_01835 PF00056 lactate/malate dehydrogenase, NAD binding domain LMD38_01835 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LMD38_01860 PF03960 ArsC family LMD38_01865 PF01597 Glycine cleavage H-protein LMD38_01870 PF01751 Toprim domain LMD38_01875 PF00085 Thioredoxin LMD38_01885 PF00005 ABC transporter LMD38_01885 PF09383 NIL domain LMD38_01890 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_01895 PF03180 NLPA lipoprotein LMD38_01900 PF03180 NLPA lipoprotein LMD38_01905 PF00005 ABC transporter LMD38_01910 PF01458 Uncharacterized protein family (UPF0051) LMD38_01915 PF00266 Aminotransferase class-V LMD38_01920 PF01592 NifU-like N terminal domain LMD38_01925 PF01458 Uncharacterized protein family (UPF0051) LMD38_01930 PF04892 VanZ like family LMD38_01935 PF03551 Transcriptional regulator PadR-like family LMD38_01940 PF02872 5'-nucleotidase, C-terminal domain LMD38_01945 PF08827 Domain of unknown function (DUF1805) LMD38_01955 PF01551 Peptidase family M23 LMD38_01960 PF04055 Radical SAM superfamily LMD38_01960 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LMD38_01980 PF10086 YhfC intramembrane metalloprotease LMD38_01985 PF13411 MerR HTH family regulatory protein LMD38_01985 PF07739 TipAS antibiotic-recognition domain LMD38_01990 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LMD38_01995 PF06265 Protein of unknown function (DUF1027) LMD38_02010 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LMD38_02015 PF01934 Protein of unknown function DUF86 LMD38_02025 PF13344 Haloacid dehalogenase-like hydrolase LMD38_02030 PF02525 Flavodoxin-like fold LMD38_02040 PF15608 PELOTA RNA binding domain LMD38_02040 PF11202 Phosphoribosyl transferase (PRTase) LMD38_02060 PF04608 Phosphatidylglycerophosphatase A LMD38_02075 PF01106 NifU-like domain LMD38_02080 PF07315 Protein of unknown function (DUF1462) LMD38_02085 PF13427 Domain of unknown function (DUF4111) LMD38_02085 PF01909 Nucleotidyltransferase domain LMD38_02130 PF08274 PhnA Zinc-Ribbon LMD38_02130 PF03831 PhnA domain LMD38_02135 PF03649 Uncharacterised protein family (UPF0014) LMD38_02140 PF09383 NIL domain LMD38_02140 PF00005 ABC transporter LMD38_02150 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_02155 PF07293 Protein of unknown function (DUF1450) LMD38_02160 PF01678 Diaminopimelate epimerase LMD38_02165 PF01521 Iron-sulphur cluster biosynthesis LMD38_02180 PF01596 O-methyltransferase LMD38_02190 PF04463 Protein of unknown function (DUF523) LMD38_02205 PF06445 GyrI-like small molecule binding domain LMD38_02210 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_02220 PF13344 Haloacid dehalogenase-like hydrolase LMD38_02220 PF00293 NUDIX domain LMD38_02230 PF06725 3D domain LMD38_02235 PF02789 Cytosol aminopeptidase family, N-terminal domain LMD38_02235 PF00883 Cytosol aminopeptidase family, catalytic domain LMD38_02240 PF02457 DisA bacterial checkpoint controller nucleotide-binding LMD38_02240 PF10372 Bacterial membrane-spanning protein N-terminus LMD38_02245 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LMD38_02245 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LMD38_02245 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LMD38_02245 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LMD38_02250 PF00483 Nucleotidyl transferase LMD38_02255 PF02632 BioY family LMD38_02265 PF03061 Thioesterase superfamily LMD38_02270 PF03129 Anticodon binding domain LMD38_02270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LMD38_02285 PF03600 Citrate transporter LMD38_02290 PF00929 Exonuclease LMD38_02295 PF08810 Kinase associated protein B LMD38_02310 PF00155 Aminotransferase class I and II LMD38_02320 PF00561 alpha/beta hydrolase fold LMD38_02320 PF08386 TAP-like protein LMD38_02325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LMD38_02325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LMD38_02330 PF01037 Lrp/AsnC ligand binding domain LMD38_02335 PF00155 Aminotransferase class I and II LMD38_02340 PF00575 S1 RNA binding domain LMD38_02345 PF04070 Domain of unknown function (DUF378) LMD38_02350 PF00342 Phosphoglucose isomerase LMD38_02355 PF08868 YugN-like family LMD38_02360 PF02254 TrkA-N domain LMD38_02360 PF07885 Ion channel LMD38_02365 PF02308 MgtC family LMD38_02400 PF05698 Bacterial trigger factor protein (TF) C-terminus LMD38_02400 PF05697 Bacterial trigger factor protein (TF) LMD38_02500 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LMD38_02500 PF00056 lactate/malate dehydrogenase, NAD binding domain LMD38_02505 PF13860 FlgD Ig-like domain LMD38_02505 PF05922 Peptidase inhibitor I9 LMD38_02505 PF02225 PA domain LMD38_02505 PF00082 Subtilase family LMD38_02515 PF02806 Alpha amylase, C-terminal all-beta domain LMD38_02515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LMD38_02515 PF00128 Alpha amylase, catalytic domain LMD38_02520 PF00483 Nucleotidyl transferase LMD38_02525 PF00483 Nucleotidyl transferase LMD38_02530 PF08323 Starch synthase catalytic domain LMD38_02530 PF00534 Glycosyl transferases group 1 LMD38_02535 PF00343 Carbohydrate phosphorylase LMD38_02555 PF00313 'Cold-shock' DNA-binding domain LMD38_02560 PF01258 Prokaryotic dksA/traR C4-type zinc finger LMD38_02565 PF01040 UbiA prenyltransferase family LMD38_02570 PF00425 chorismate binding enzyme LMD38_02575 PF16582 Middle domain of thiamine pyrophosphate LMD38_02575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LMD38_02575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LMD38_02580 PF12697 Alpha/beta hydrolase family LMD38_02585 PF00378 Enoyl-CoA hydratase/isomerase LMD38_02590 PF00501 AMP-binding enzyme LMD38_02590 PF13193 AMP-binding enzyme C-terminal domain LMD38_02595 PF13378 Enolase C-terminal domain-like LMD38_02595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LMD38_02600 PF00072 Response regulator receiver domain LMD38_02600 PF00486 Transcriptional regulatory protein, C terminal LMD38_02605 PF00512 His Kinase A (phospho-acceptor) domain LMD38_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_02610 PF02557 D-alanyl-D-alanine carboxypeptidase LMD38_02625 PF01979 Amidohydrolase family LMD38_02630 PF03841 L-seryl-tRNA selenium transferase LMD38_02635 PF07071 KDGP aldolase LMD38_02645 PF00392 Bacterial regulatory proteins, gntR family LMD38_02645 PF07702 UTRA domain LMD38_02650 PF02447 GntP family permease LMD38_02660 PF13977 BetI-type transcriptional repressor, C-terminal LMD38_02660 PF00440 Bacterial regulatory proteins, tetR family LMD38_02670 PF02687 FtsX-like permease family LMD38_02675 PF00005 ABC transporter LMD38_02680 PF02687 FtsX-like permease family LMD38_02685 PF02687 FtsX-like permease family LMD38_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_02695 PF00072 Response regulator receiver domain LMD38_02695 PF00486 Transcriptional regulatory protein, C terminal LMD38_02700 PF01022 Bacterial regulatory protein, arsR family LMD38_02705 PF13630 SdpI/YhfL protein family LMD38_02705 PF07853 Protein of unknown function (DUF1648) LMD38_02710 PF06445 GyrI-like small molecule binding domain LMD38_02710 PF12833 Helix-turn-helix domain LMD38_02715 PF00005 ABC transporter LMD38_02720 PF02687 FtsX-like permease family LMD38_02725 PF00398 Ribosomal RNA adenine dimethylase LMD38_02730 PF09335 SNARE associated Golgi protein LMD38_02745 PF00005 ABC transporter LMD38_02750 PF02687 FtsX-like permease family LMD38_02770 PF00781 Diacylglycerol kinase catalytic domain LMD38_02775 PF00156 Phosphoribosyl transferase domain LMD38_02790 PF01520 N-acetylmuramoyl-L-alanine amidase LMD38_02790 PF00395 S-layer homology domain LMD38_02805 PF00486 Transcriptional regulatory protein, C terminal LMD38_02805 PF00072 Response regulator receiver domain LMD38_02810 PF00512 His Kinase A (phospho-acceptor) domain LMD38_02810 PF00672 HAMP domain LMD38_02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_02815 PF09515 Thiamine transporter protein (Thia_YuaJ) LMD38_02825 PF07664 Ferrous iron transport protein B C terminus LMD38_02825 PF17910 FeoB cytosolic helical domain LMD38_02825 PF02421 Ferrous iron transport protein B LMD38_02825 PF07670 Nucleoside recognition LMD38_02840 PF04012 PspA/IM30 family LMD38_02865 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_02865 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_02880 PF10676 Spore germination protein gerPA/gerPF LMD38_02885 PF02322 Cytochrome bd terminal oxidase subunit II LMD38_02890 PF01654 Cytochrome bd terminal oxidase subunit I LMD38_02895 PF00484 Carbonic anhydrase LMD38_02900 PF01809 Putative membrane protein insertion efficiency factor LMD38_02905 PF02664 S-Ribosylhomocysteinase (LuxS) LMD38_02930 PF00293 NUDIX domain LMD38_02940 PF13419 Haloacid dehalogenase-like hydrolase LMD38_02955 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_02960 PF00005 ABC transporter LMD38_02990 PF00884 Sulfatase LMD38_02995 PF00561 alpha/beta hydrolase fold LMD38_02995 PF08386 TAP-like protein LMD38_03000 PF00989 PAS fold LMD38_03000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_03000 PF00512 His Kinase A (phospho-acceptor) domain LMD38_03000 PF08447 PAS fold LMD38_03005 PF13426 PAS domain LMD38_03005 PF13188 PAS domain LMD38_03005 PF00989 PAS fold LMD38_03005 PF00512 His Kinase A (phospho-acceptor) domain LMD38_03005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_03030 PF01784 NIF3 (NGG1p interacting factor 3) LMD38_03065 PF01293 Phosphoenolpyruvate carboxykinase LMD38_03070 PF02772 S-adenosylmethionine synthetase, central domain LMD38_03070 PF02773 S-adenosylmethionine synthetase, C-terminal domain LMD38_03070 PF00438 S-adenosylmethionine synthetase, N-terminal domain LMD38_03075 PF13302 Acetyltransferase (GNAT) domain LMD38_03090 PF00994 Probable molybdopterin binding domain LMD38_03095 PF12804 MobA-like NTP transferase domain LMD38_03100 PF13439 Glycosyltransferase Family 4 LMD38_03100 PF00534 Glycosyl transferases group 1 LMD38_03105 PF01569 PAP2 superfamily LMD38_03110 PF00132 Bacterial transferase hexapeptide (six repeats) LMD38_03115 PF12146 Serine aminopeptidase, S33 LMD38_03120 PF10776 Protein of unknown function (DUF2600) LMD38_03140 PF01177 Asp/Glu/Hydantoin racemase LMD38_03150 PF00005 ABC transporter LMD38_03155 PF06962 Putative rRNA methylase LMD38_03160 PF04055 Radical SAM superfamily LMD38_03160 PF16199 Radical_SAM C-terminal domain LMD38_03165 PF10732 Protein of unknown function (DUF2524) LMD38_03175 PF07786 Protein of unknown function (DUF1624) LMD38_03175 PF04235 Protein of unknown function (DUF418) LMD38_03180 PF00005 ABC transporter LMD38_03190 PF00589 Phage integrase family LMD38_03195 PF02080 TrkA-C domain LMD38_03200 PF00999 Sodium/hydrogen exchanger family LMD38_03205 PF07690 Major Facilitator Superfamily LMD38_03210 PF08264 Anticodon-binding domain of tRNA LMD38_03210 PF00133 tRNA synthetases class I (I, L, M and V) LMD38_03210 PF13603 Leucyl-tRNA synthetase, Domain 2 LMD38_03210 PF09334 tRNA synthetases class I (M) LMD38_03240 PF03845 Spore germination protein LMD38_03245 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_03245 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_03250 PF00561 alpha/beta hydrolase fold LMD38_03260 PF00581 Rhodanese-like domain LMD38_03280 PF04055 Radical SAM superfamily LMD38_03280 PF06463 Molybdenum Cofactor Synthesis C LMD38_03285 PF00899 ThiF family LMD38_03290 PF01967 MoaC family LMD38_03295 PF03454 MoeA C-terminal region (domain IV) LMD38_03295 PF00994 Probable molybdopterin binding domain LMD38_03295 PF03453 MoeA N-terminal region (domain I and II) LMD38_03300 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LMD38_03305 PF12323 Helix-turn-helix domain LMD38_03305 PF01385 Probable transposase LMD38_03305 PF07282 Putative transposase DNA-binding domain LMD38_03310 PF02391 MoaE protein LMD38_03325 PF06800 Sugar transport protein LMD38_03335 PF02559 CarD-like/TRCF domain LMD38_03345 PF10957 Sporulation protein Cse60 LMD38_03355 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LMD38_03360 PF01022 Bacterial regulatory protein, arsR family LMD38_03365 PF07690 Major Facilitator Superfamily LMD38_03375 PF01943 Polysaccharide biosynthesis protein LMD38_03375 PF14667 Polysaccharide biosynthesis C-terminal domain LMD38_03380 PF00849 RNA pseudouridylate synthase LMD38_03380 PF01479 S4 domain LMD38_03385 PF08220 DeoR-like helix-turn-helix domain LMD38_03390 PF01546 Peptidase family M20/M25/M40 LMD38_03395 PF02834 LigT like Phosphoesterase LMD38_03400 PF00128 Alpha amylase, catalytic domain LMD38_03400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LMD38_03400 PF17999 Pullulanase N1-terminal domain LMD38_03405 PF01636 Phosphotransferase enzyme family LMD38_03410 PF14165 YtzH-like protein LMD38_03415 PF02390 Putative methyltransferase LMD38_03420 PF00753 Metallo-beta-lactamase superfamily LMD38_03430 PF05343 M42 glutamyl aminopeptidase LMD38_03435 PF01931 Protein of unknown function DUF84 LMD38_03440 PF00085 Thioredoxin LMD38_03445 PF07285 Protein of unknown function (DUF1444) LMD38_03450 PF01588 Putative tRNA binding domain LMD38_03450 PF14794 Domain of unknown function (DUF4479) LMD38_03460 PF08239 Bacterial SH3 domain LMD38_03460 PF01520 N-acetylmuramoyl-L-alanine amidase LMD38_03465 PF17854 FtsK alpha domain LMD38_03465 PF09397 Ftsk gamma domain LMD38_03465 PF01580 FtsK/SpoIIIE family LMD38_03475 PF02875 Mur ligase family, glutamate ligase domain LMD38_03475 PF08245 Mur ligase middle domain LMD38_03475 PF01225 Mur ligase family, catalytic domain LMD38_03480 PF13302 Acetyltransferase (GNAT) domain LMD38_03505 PF02073 Thermophilic metalloprotease (M29) LMD38_03515 PF11009 Protein of unknown function (DUF2847) LMD38_03520 PF07537 CamS sex pheromone cAM373 precursor LMD38_03525 PF00356 Bacterial regulatory proteins, lacI family LMD38_03550 PF01741 Large-conductance mechanosensitive channel, MscL LMD38_03555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LMD38_03575 PF00850 Histone deacetylase domain LMD38_03580 PF00571 CBS domain LMD38_03585 PF00583 Acetyltransferase (GNAT) family LMD38_03590 PF13193 AMP-binding enzyme C-terminal domain LMD38_03590 PF00501 AMP-binding enzyme LMD38_03600 PF00579 tRNA synthetases class I (W and Y) LMD38_03600 PF01479 S4 domain LMD38_03625 PF04740 LXG domain of WXG superfamily LMD38_03625 PF14436 Bacterial EndoU nuclease LMD38_03630 PF01479 S4 domain LMD38_03630 PF00163 Ribosomal protein S4/S9 N-terminal domain LMD38_03635 PF01053 Cys/Met metabolism PLP-dependent enzyme LMD38_03640 PF13185 GAF domain LMD38_03645 PF00440 Bacterial regulatory proteins, tetR family LMD38_03650 PF00892 EamA-like transporter family LMD38_03655 PF03466 LysR substrate binding domain LMD38_03655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_03660 PF06160 Septation ring formation regulator, EzrA LMD38_03665 PF00266 Aminotransferase class-V LMD38_03670 PF02568 Thiamine biosynthesis protein (ThiI) LMD38_03670 PF02926 THUMP domain LMD38_03675 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_03680 PF00501 AMP-binding enzyme LMD38_03680 PF13193 AMP-binding enzyme C-terminal domain LMD38_03690 PF07969 Amidohydrolase family LMD38_03695 PF01513 ATP-NAD kinase LMD38_03705 PF09579 Sporulation protein YtfJ (Spore_YtfJ) LMD38_03710 PF08534 Redoxin LMD38_03715 PF02384 N-6 DNA Methylase LMD38_03720 PF00871 Acetokinase family LMD38_03735 PF12787 EcsC protein family LMD38_03740 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_03740 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_03755 PF00764 Arginosuccinate synthase LMD38_03760 PF00206 Lyase LMD38_03760 PF14698 Argininosuccinate lyase C-terminal LMD38_03780 PF00582 Universal stress protein family LMD38_03790 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LMD38_03790 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LMD38_03800 PF01381 Helix-turn-helix LMD38_03810 PF07883 Cupin domain LMD38_03850 PF01321 Creatinase/Prolidase N-terminal domain LMD38_03850 PF00557 Metallopeptidase family M24 LMD38_03865 PF03061 Thioesterase superfamily LMD38_03865 PF00571 CBS domain LMD38_03865 PF07085 DRTGG domain LMD38_03865 PF00392 Bacterial regulatory proteins, gntR family LMD38_03875 PF01636 Phosphotransferase enzyme family LMD38_03885 PF14007 YtpI-like protein LMD38_03890 PF01368 DHH family LMD38_03890 PF02272 DHHA1 domain LMD38_03900 PF14034 Sporulation protein YtrH LMD38_03905 PF07733 Bacterial DNA polymerase III alpha NTPase domain LMD38_03905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LMD38_03905 PF14579 Helix-hairpin-helix motif LMD38_03905 PF02811 PHP domain LMD38_03905 PF01336 OB-fold nucleic acid binding domain LMD38_03910 PF00390 Malic enzyme, N-terminal domain LMD38_03910 PF03949 Malic enzyme, NAD binding domain LMD38_03915 PF00392 Bacterial regulatory proteins, gntR family LMD38_03920 PF17848 Acetyl-coA carboxylase zinc finger domain LMD38_03920 PF01039 Carboxyl transferase domain LMD38_03925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LMD38_03930 PF00365 Phosphofructokinase LMD38_03935 PF00391 PEP-utilising enzyme, mobile domain LMD38_03935 PF00224 Pyruvate kinase, barrel domain LMD38_03935 PF02887 Pyruvate kinase, alpha/beta domain LMD38_03940 PF04186 FxsA cytoplasmic membrane protein LMD38_03945 PF01594 AI-2E family transporter LMD38_03950 PF04284 Protein of unknown function (DUF441) LMD38_03955 PF00285 Citrate synthase, C-terminal domain LMD38_03960 PF00180 Isocitrate/isopropylmalate dehydrogenase LMD38_03965 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LMD38_03965 PF00056 lactate/malate dehydrogenase, NAD binding domain LMD38_03980 PF00072 Response regulator receiver domain LMD38_03980 PF00486 Transcriptional regulatory protein, C terminal LMD38_03985 PF00989 PAS fold LMD38_03985 PF00512 His Kinase A (phospho-acceptor) domain LMD38_03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_03985 PF16736 Single Cache-like LMD38_03990 PF01367 5'-3' exonuclease, C-terminal SAM fold LMD38_03990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LMD38_03990 PF00476 DNA polymerase family A LMD38_03995 PF06827 Zinc finger found in FPG and IleRS LMD38_03995 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LMD38_03995 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LMD38_04000 PF02659 Putative manganese efflux pump LMD38_04005 PF01121 Dephospho-CoA kinase LMD38_04010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LMD38_04010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LMD38_04015 PF02675 S-adenosylmethionine decarboxylase LMD38_04020 PF03477 ATP cone domain LMD38_04025 PF07261 Replication initiation and membrane attachment LMD38_04030 PF07319 Primosomal protein DnaI N-terminus LMD38_04030 PF01695 IstB-like ATP binding protein LMD38_04035 PF08812 YtxC-like family LMD38_04040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LMD38_04040 PF03129 Anticodon binding domain LMD38_04040 PF02824 TGS domain LMD38_04040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LMD38_04045 PF00707 Translation initiation factor IF-3, C-terminal domain LMD38_04045 PF05198 Translation initiation factor IF-3, N-terminal domain LMD38_04050 PF01632 Ribosomal protein L35 LMD38_04055 PF00453 Ribosomal protein L20 LMD38_04065 PF05343 M42 glutamyl aminopeptidase LMD38_04070 PF16859 Tetracyclin repressor-like, C-terminal domain LMD38_04070 PF00440 Bacterial regulatory proteins, tetR family LMD38_04080 PF07690 Major Facilitator Superfamily LMD38_04100 PF01966 HD domain LMD38_04105 PF14098 Small, acid-soluble spore protein I LMD38_04110 PF08032 RNA 2'-O ribose methyltransferase substrate binding LMD38_04110 PF00588 SpoU rRNA Methylase family LMD38_04115 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LMD38_04115 PF01409 tRNA synthetases class II core domain (F) LMD38_04120 PF03147 Ferredoxin-fold anticodon binding domain LMD38_04120 PF03484 tRNA synthetase B5 domain LMD38_04120 PF01588 Putative tRNA binding domain LMD38_04120 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LMD38_04120 PF03483 B3/4 domain LMD38_04125 PF01336 OB-fold nucleic acid binding domain LMD38_04125 PF00152 tRNA synthetases class II (D, K and N) LMD38_04145 PF01351 Ribonuclease HII LMD38_04145 PF11858 Domain of unknown function (DUF3378) LMD38_04150 PF05164 Cell division protein ZapA LMD38_04155 PF02674 Colicin V production protein LMD38_04160 PF14791 DNA polymerase beta thumb LMD38_04160 PF14716 Helix-hairpin-helix domain LMD38_04160 PF02811 PHP domain LMD38_04165 PF00488 MutS domain V LMD38_04165 PF01713 Smr domain LMD38_04170 PF00849 RNA pseudouridylate synthase LMD38_04170 PF01479 S4 domain LMD38_04175 PF05525 Branched-chain amino acid transport protein LMD38_04180 PF05031 Iron Transport-associated domain LMD38_04185 PF05031 Iron Transport-associated domain LMD38_04190 PF01497 Periplasmic binding protein LMD38_04195 PF01032 FecCD transport family LMD38_04200 PF00005 ABC transporter LMD38_04205 PF04203 Sortase domain LMD38_04210 PF03992 Antibiotic biosynthesis monooxygenase LMD38_04215 PF17785 PUA-like domain LMD38_04215 PF10672 S-adenosylmethionine-dependent methyltransferase LMD38_04220 PF09962 Uncharacterized conserved protein (DUF2196) LMD38_04230 PF00486 Transcriptional regulatory protein, C terminal LMD38_04230 PF00072 Response regulator receiver domain LMD38_04235 PF00512 His Kinase A (phospho-acceptor) domain LMD38_04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_04240 PF00005 ABC transporter LMD38_04265 PF05163 DinB family LMD38_04280 PF00501 AMP-binding enzyme LMD38_04280 PF13193 AMP-binding enzyme C-terminal domain LMD38_04285 PF08359 YsiA-like protein, C-terminal region LMD38_04285 PF00440 Bacterial regulatory proteins, tetR family LMD38_04290 PF00378 Enoyl-CoA hydratase/isomerase LMD38_04295 PF01012 Electron transfer flavoprotein domain LMD38_04300 PF01012 Electron transfer flavoprotein domain LMD38_04300 PF00766 Electron transfer flavoprotein FAD-binding domain LMD38_04305 PF00085 Thioredoxin LMD38_04310 PF01541 GIY-YIG catalytic domain LMD38_04310 PF02151 UvrB/uvrC motif LMD38_04310 PF08459 UvrC Helix-hairpin-helix N-terminal LMD38_04315 PF10702 Protein of unknown function (DUF2507) LMD38_04320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LMD38_04325 PF02910 Fumarate reductase flavoprotein C-term LMD38_04325 PF00890 FAD binding domain LMD38_04330 PF13085 2Fe-2S iron-sulfur cluster binding domain LMD38_04330 PF13183 4Fe-4S dicluster domain LMD38_04335 PF03061 Thioesterase superfamily LMD38_04340 PF02557 D-alanyl-D-alanine carboxypeptidase LMD38_04345 PF01618 MotA/TolQ/ExbB proton channel family LMD38_04350 PF13677 Membrane MotB of proton-channel complex MotA/MotB LMD38_04350 PF00691 OmpA family LMD38_04355 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LMD38_04360 PF13732 Domain of unknown function (DUF4162) LMD38_04360 PF00005 ABC transporter LMD38_04370 PF02082 Transcriptional regulator LMD38_04375 PF00230 Major intrinsic protein LMD38_04380 PF13536 Putative multidrug resistance efflux transporter LMD38_04385 PF07883 Cupin domain LMD38_04385 PF01381 Helix-turn-helix LMD38_04390 PF04024 PspC domain LMD38_04395 PF07969 Amidohydrolase family LMD38_04400 PF00860 Permease family LMD38_04405 PF00196 Bacterial regulatory proteins, luxR family LMD38_04445 PF01368 DHH family LMD38_04445 PF02272 DHHA1 domain LMD38_04445 PF17768 RecJ OB domain LMD38_04445 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LMD38_04470 PF00145 C-5 cytosine-specific DNA methylase LMD38_04470 PF12728 Helix-turn-helix domain LMD38_04490 PF02463 RecF/RecN/SMC N terminal domain LMD38_04560 PF00440 Bacterial regulatory proteins, tetR family LMD38_04570 PF07690 Major Facilitator Superfamily LMD38_04575 PF01177 Asp/Glu/Hydantoin racemase LMD38_04580 PF10646 Sporulation and spore germination LMD38_04585 PF01138 3' exoribonuclease family, domain 1 LMD38_04585 PF03725 3' exoribonuclease family, domain 2 LMD38_04590 PF01725 Ham1 family LMD38_04595 PF12850 Calcineurin-like phosphoesterase superfamily domain LMD38_04610 PF18801 response regulator aspartate phosphatase H, N terminal LMD38_04625 PF08000 Bacterial PH domain LMD38_04625 PF11724 YvbH-like oligomerisation region LMD38_04645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LMD38_04645 PF05698 Bacterial trigger factor protein (TF) C-terminus LMD38_04645 PF05697 Bacterial trigger factor protein (TF) LMD38_04650 PF07724 AAA domain (Cdc48 subfamily) LMD38_04650 PF06689 ClpX C4-type zinc finger LMD38_04650 PF10431 C-terminal, D2-small domain, of ClpB protein LMD38_04655 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_04655 PF05362 Lon protease (S16) C-terminal proteolytic domain LMD38_04660 PF05362 Lon protease (S16) C-terminal proteolytic domain LMD38_04660 PF02190 ATP-dependent protease La (LON) substrate-binding domain LMD38_04660 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_04665 PF01926 50S ribosome-binding GTPase LMD38_04670 PF02566 OsmC-like protein LMD38_04675 PF01047 MarR family LMD38_04680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LMD38_04680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LMD38_04680 PF01488 Shikimate / quinate 5-dehydrogenase LMD38_04685 PF01578 Cytochrome C assembly protein LMD38_04690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LMD38_04690 PF03900 Porphobilinogen deaminase, C-terminal domain LMD38_04695 PF02602 Uroporphyrinogen-III synthase HemD LMD38_04700 PF00490 Delta-aminolevulinic acid dehydratase LMD38_04705 PF00202 Aminotransferase class-III LMD38_04710 PF01476 LysM domain LMD38_04720 PF08264 Anticodon-binding domain of tRNA LMD38_04720 PF00133 tRNA synthetases class I (I, L, M and V) LMD38_04720 PF10458 Valyl tRNA synthetase tRNA binding arm LMD38_04725 PF02875 Mur ligase family, glutamate ligase domain LMD38_04725 PF08245 Mur ligase middle domain LMD38_04735 PF02545 Maf-like protein LMD38_04740 PF04002 RadC-like JAB domain LMD38_04750 PF04085 rod shape-determining protein MreC LMD38_04760 PF03775 Septum formation inhibitor MinC, C-terminal domain LMD38_04765 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LMD38_04770 PF01551 Peptidase family M23 LMD38_04775 PF02163 Peptidase family M50 LMD38_04780 PF00575 S1 RNA binding domain LMD38_04780 PF10150 Ribonuclease E/G family LMD38_04785 PF00829 Ribosomal prokaryotic L21 protein LMD38_04790 PF04327 Cysteine protease Prp LMD38_04795 PF01016 Ribosomal L27 protein LMD38_04800 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LMD38_04800 PF14682 Sporulation initiation phospho-transferase B, C-terminal LMD38_04805 PF01926 50S ribosome-binding GTPase LMD38_04805 PF01018 GTP1/OBG LMD38_04805 PF09269 Domain of unknown function (DUF1967) LMD38_04810 PF00486 Transcriptional regulatory protein, C terminal LMD38_04810 PF00072 Response regulator receiver domain LMD38_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_04820 PF00005 ABC transporter LMD38_04825 PF02687 FtsX-like permease family LMD38_04830 PF02687 FtsX-like permease family LMD38_04835 PF01842 ACT domain LMD38_04835 PF00800 Prephenate dehydratase LMD38_04845 PF03475 3-alpha domain LMD38_04845 PF03473 MOSC domain LMD38_04850 PF02829 3H domain LMD38_04850 PF08279 HTH domain LMD38_04855 PF00266 Aminotransferase class-V LMD38_04860 PF00890 FAD binding domain LMD38_04860 PF02910 Fumarate reductase flavoprotein C-term LMD38_04865 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LMD38_04865 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LMD38_04870 PF02445 Quinolinate synthetase A protein LMD38_04875 PF01476 LysM domain LMD38_04895 PF01330 RuvA N terminal domain LMD38_04895 PF07499 RuvA, C-terminal domain LMD38_04900 PF17864 RuvB AAA lid domain LMD38_04900 PF05491 RuvB C-terminal winged helix domain LMD38_04900 PF05496 Holliday junction DNA helicase RuvB P-loop domain LMD38_04905 PF11146 Protein of unknown function (DUF2905) LMD38_04910 PF02547 Queuosine biosynthesis protein LMD38_04915 PF01702 Queuine tRNA-ribosyltransferase LMD38_04920 PF02699 Preprotein translocase subunit LMD38_04930 PF04239 Protein of unknown function (DUF421) LMD38_04935 PF01943 Polysaccharide biosynthesis protein LMD38_04935 PF14667 Polysaccharide biosynthesis C-terminal domain LMD38_04940 PF13797 Post-transcriptional regulator LMD38_04945 PF02355 Protein export membrane protein LMD38_04945 PF07549 SecD/SecF GG Motif LMD38_04950 PF01545 Cation efflux family LMD38_04950 PF16916 Dimerisation domain of Zinc Transporter LMD38_04955 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LMD38_04955 PF17768 RecJ OB domain LMD38_04955 PF02272 DHHA1 domain LMD38_04955 PF01368 DHH family LMD38_04960 PF00156 Phosphoribosyl transferase domain LMD38_04965 PF13291 ACT domain LMD38_04965 PF04607 Region found in RelA / SpoT proteins LMD38_04965 PF02824 TGS domain LMD38_04970 PF02580 D-Tyr-tRNA(Tyr) deacylase LMD38_04990 PF13393 Histidyl-tRNA synthetase LMD38_04990 PF03129 Anticodon binding domain LMD38_04995 PF02938 GAD domain LMD38_04995 PF01336 OB-fold nucleic acid binding domain LMD38_04995 PF00152 tRNA synthetases class II (D, K and N) LMD38_05000 PF00899 ThiF family LMD38_05010 PF16193 AAA C-terminal domain LMD38_05010 PF12002 MgsA AAA+ ATPase C terminal LMD38_05010 PF05496 Holliday junction DNA helicase RuvB P-loop domain LMD38_05015 PF02082 Transcriptional regulator LMD38_05020 PF00266 Aminotransferase class-V LMD38_05035 PF14490 Helix-hairpin-helix containing domain LMD38_05035 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LMD38_05035 PF13538 UvrD-like helicase C-terminal domain LMD38_05055 PF01594 AI-2E family transporter LMD38_05065 PF01411 tRNA synthetases class II (A) LMD38_05065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LMD38_05065 PF02272 DHHA1 domain LMD38_05070 PF06135 IreB regulatory phosphoprotein LMD38_05075 PF03652 Holliday junction resolvase LMD38_05080 PF06949 Protein of unknown function (DUF1292) LMD38_05085 PF02618 YceG-like family LMD38_05090 PF01596 O-methyltransferase LMD38_05095 PF01136 Peptidase family U32 LMD38_05100 PF16325 Peptidase family U32 C-terminal domain LMD38_05100 PF01136 Peptidase family U32 LMD38_05105 PF00485 Phosphoribulokinase / Uridine kinase family LMD38_05110 PF01272 Transcription elongation factor, GreA/GreB, C-term LMD38_05110 PF03449 Transcription elongation factor, N-terminal LMD38_05115 PF03717 Penicillin-binding Protein dimerisation domain LMD38_05115 PF00905 Penicillin binding protein transpeptidase domain LMD38_05130 PF08241 Methyltransferase domain LMD38_05135 PF01048 Phosphorylase superfamily LMD38_05140 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_05145 PF01053 Cys/Met metabolism PLP-dependent enzyme LMD38_05150 PF00171 Aldehyde dehydrogenase family LMD38_05150 PF00465 Iron-containing alcohol dehydrogenase LMD38_05160 PF01497 Periplasmic binding protein LMD38_05165 PF01032 FecCD transport family LMD38_05170 PF00005 ABC transporter LMD38_05200 PF07681 DoxX LMD38_05205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_05215 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LMD38_05220 PF05922 Peptidase inhibitor I9 LMD38_05220 PF02225 PA domain LMD38_05220 PF13860 FlgD Ig-like domain LMD38_05220 PF00082 Subtilase family LMD38_05255 PF00561 alpha/beta hydrolase fold LMD38_05255 PF08386 TAP-like protein LMD38_05265 PF00245 Alkaline phosphatase LMD38_05275 PF04607 Region found in RelA / SpoT proteins LMD38_05280 PF00471 Ribosomal protein L33 LMD38_05295 PF04542 Sigma-70 region 2 LMD38_05295 PF04545 Sigma-70, region 4 LMD38_05300 PF02666 Phosphatidylserine decarboxylase LMD38_05315 PF01926 50S ribosome-binding GTPase LMD38_05320 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LMD38_05320 PF01488 Shikimate / quinate 5-dehydrogenase LMD38_05320 PF08501 Shikimate dehydrogenase substrate binding domain LMD38_05325 PF01985 CRS1 / YhbY (CRM) domain LMD38_05330 PF01467 Cytidylyltransferase-like LMD38_05335 PF01966 HD domain LMD38_05345 PF13649 Methyltransferase domain LMD38_05350 PF14748 Pyrroline-5-carboxylate reductase dimerisation LMD38_05350 PF03807 NADP oxidoreductase coenzyme F420-dependent LMD38_05355 PF10531 SLBB domain LMD38_05360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LMD38_05365 PF13567 Domain of unknown function (DUF4131) LMD38_05365 PF00753 Metallo-beta-lactamase superfamily LMD38_05365 PF03772 Competence protein LMD38_05370 PF14141 YqzM-like protein LMD38_05375 PF06144 DNA polymerase III, delta subunit LMD38_05380 PF01649 Ribosomal protein S20 LMD38_05385 PF03418 Germination protease LMD38_05395 PF00679 Elongation factor G C-terminus LMD38_05395 PF03144 Elongation factor Tu domain 2 LMD38_05395 PF06421 GTP-binding protein LepA C-terminus LMD38_05395 PF00009 Elongation factor Tu GTP binding domain LMD38_05400 PF01638 HxlR-like helix-turn-helix LMD38_05405 PF06969 HemN C-terminal domain LMD38_05405 PF04055 Radical SAM superfamily LMD38_05410 PF01628 HrcA protein C terminal domain LMD38_05415 PF01025 GrpE LMD38_05420 PF00012 Hsp70 protein LMD38_05425 PF00684 DnaJ central domain LMD38_05425 PF00226 DnaJ domain LMD38_05425 PF01556 DnaJ C terminal domain LMD38_05435 PF04452 RNA methyltransferase LMD38_05440 PF04055 Radical SAM superfamily LMD38_05440 PF00919 Uncharacterized protein family UPF0004 LMD38_05440 PF01938 TRAM domain LMD38_05445 PF01165 Ribosomal protein S21 LMD38_05450 PF09424 Yqey-like protein LMD38_05455 PF07873 YabP family LMD38_05460 PF06898 Putative stage IV sporulation protein YqfD LMD38_05465 PF02562 PhoH-like protein LMD38_05470 PF01966 HD domain LMD38_05470 PF07697 7TM-HD extracellular LMD38_05470 PF07698 7TM receptor with intracellular HD hydrolase LMD38_05475 PF02130 Uncharacterized protein family UPF0054 LMD38_05480 PF01219 Prokaryotic diacylglycerol kinase LMD38_05485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LMD38_05490 PF01926 50S ribosome-binding GTPase LMD38_05490 PF07650 KH domain LMD38_05500 PF11967 Recombination protein O N terminal LMD38_05500 PF02565 Recombination protein O C terminal LMD38_05505 PF00571 CBS domain LMD38_05505 PF08279 HTH domain LMD38_05510 PF03618 Kinase/pyrophosphorylase LMD38_05515 PF10410 DnaB-helicase binding domain of primase LMD38_05515 PF08275 DNA primase catalytic core, N-terminal domain LMD38_05515 PF01807 CHC2 zinc finger LMD38_05520 PF03979 Sigma-70 factor, region 1.1 LMD38_05520 PF04545 Sigma-70, region 4 LMD38_05520 PF00140 Sigma-70 factor, region 1.2 LMD38_05520 PF04542 Sigma-70 region 2 LMD38_05520 PF04539 Sigma-70 region 3 LMD38_05525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LMD38_05530 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LMD38_05535 PF01784 NIF3 (NGG1p interacting factor 3) LMD38_05540 PF02401 LytB protein LMD38_05550 PF00270 DEAD/DEAH box helicase LMD38_05550 PF00271 Helicase conserved C-terminal domain LMD38_05555 PF01261 Xylose isomerase-like TIM barrel LMD38_05560 PF11116 Protein of unknown function (DUF2624) LMD38_05565 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_05565 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_05570 PF00005 ABC transporter LMD38_05575 PF00950 ABC 3 transport family LMD38_05580 PF01475 Ferric uptake regulator family LMD38_05585 PF04551 GcpE protein LMD38_05605 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LMD38_05605 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LMD38_05610 PF07690 Major Facilitator Superfamily LMD38_05615 PF03717 Penicillin-binding Protein dimerisation domain LMD38_05615 PF00905 Penicillin binding protein transpeptidase domain LMD38_05620 PF12849 PBP superfamily domain LMD38_05625 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_05630 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_05635 PF00005 ABC transporter LMD38_05640 PF01895 PhoU domain LMD38_05645 PF00483 Nucleotidyl transferase LMD38_05650 PF00471 Ribosomal protein L33 LMD38_05655 PF01812 5-formyltetrahydrofolate cyclo-ligase family LMD38_05660 PF06014 Bacterial protein of unknown function (DUF910) LMD38_05665 PF00480 ROK family LMD38_05670 PF10958 Protein of unknown function (DUF2759) LMD38_05675 PF00753 Metallo-beta-lactamase superfamily LMD38_05685 PF01022 Bacterial regulatory protein, arsR family LMD38_05695 PF01053 Cys/Met metabolism PLP-dependent enzyme LMD38_05700 PF01053 Cys/Met metabolism PLP-dependent enzyme LMD38_05705 PF02219 Methylenetetrahydrofolate reductase LMD38_05705 PF02574 Homocysteine S-methyltransferase LMD38_05710 PF02310 B12 binding domain LMD38_05710 PF02607 B12 binding domain LMD38_05710 PF02965 Vitamin B12 dependent methionine synthase, activation domain LMD38_05710 PF00809 Pterin binding enzyme LMD38_05710 PF02574 Homocysteine S-methyltransferase LMD38_05715 PF04101 Glycosyltransferase family 28 C-terminal domain LMD38_05715 PF03033 Glycosyltransferase family 28 N-terminal domain LMD38_05750 PF00375 Sodium:dicarboxylate symporter family LMD38_05755 PF11117 Protein of unknown function (DUF2626) LMD38_05765 PF00437 Type II/IV secretion system protein LMD38_05770 PF00482 Type II secretion system (T2SS), protein F LMD38_05780 PF07963 Prokaryotic N-terminal methylation motif LMD38_05805 PF01202 Shikimate kinase LMD38_05810 PF14038 YqzE-like protein LMD38_05840 PF11079 Bacterial protein YqhG of unknown function LMD38_05845 PF00271 Helicase conserved C-terminal domain LMD38_05845 PF00176 SNF2 family N-terminal domain LMD38_05850 PF08669 Glycine cleavage T-protein C-terminal barrel domain LMD38_05850 PF01571 Aminomethyltransferase folate-binding domain LMD38_05855 PF02347 Glycine cleavage system P-protein LMD38_05860 PF02347 Glycine cleavage system P-protein LMD38_05875 PF00392 Bacterial regulatory proteins, gntR family LMD38_05880 PF00005 ABC transporter LMD38_05920 PF00893 Small Multidrug Resistance protein LMD38_05925 PF00893 Small Multidrug Resistance protein LMD38_05935 PF00356 Bacterial regulatory proteins, lacI family LMD38_05935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LMD38_05940 PF00581 Rhodanese-like domain LMD38_05945 PF03099 Biotin/lipoate A/B protein ligase family LMD38_05960 PF02742 Iron dependent repressor, metal binding and dimerisation domain LMD38_05960 PF01325 Iron dependent repressor, N-terminal DNA binding domain LMD38_05965 PF13419 Haloacid dehalogenase-like hydrolase LMD38_05975 PF07136 Protein of unknown function (DUF1385) LMD38_05980 PF11085 Conserved membrane protein YqhR LMD38_05985 PF01220 Dehydroquinase class II LMD38_05990 PF01321 Creatinase/Prolidase N-terminal domain LMD38_05990 PF00557 Metallopeptidase family M24 LMD38_05995 PF01132 Elongation factor P (EF-P) OB domain LMD38_05995 PF08207 Elongation factor P (EF-P) KOW-like domain LMD38_05995 PF09285 Elongation factor P, C-terminal LMD38_06020 PF09548 Stage III sporulation protein AB (spore_III_AB) LMD38_06025 PF06686 Stage III sporulation protein AC/AD protein family LMD38_06030 PF06686 Stage III sporulation protein AC/AD protein family LMD38_06035 PF09546 Stage III sporulation protein AE (spore_III_AE) LMD38_06040 PF09581 Stage III sporulation protein AF (Spore_III_AF) LMD38_06050 PF12685 SpoIIIAH-like protein LMD38_06060 PF00364 Biotin-requiring enzyme LMD38_06065 PF02785 Biotin carboxylase C-terminal domain LMD38_06065 PF00289 Biotin carboxylase, N-terminal domain LMD38_06065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LMD38_06070 PF03780 Asp23 family, cell envelope-related function LMD38_06075 PF01029 NusB family LMD38_06080 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LMD38_06080 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LMD38_06085 PF13742 OB-fold nucleic acid binding domain LMD38_06085 PF02601 Exonuclease VII, large subunit LMD38_06090 PF02609 Exonuclease VII small subunit LMD38_06095 PF00348 Polyprenyl synthetase LMD38_06100 PF02780 Transketolase, C-terminal domain LMD38_06100 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LMD38_06100 PF02779 Transketolase, pyrimidine binding domain LMD38_06105 PF01479 S4 domain LMD38_06105 PF01728 FtsJ-like methyltransferase LMD38_06110 PF02863 Arginine repressor, C-terminal domain LMD38_06110 PF01316 Arginine repressor, DNA binding domain LMD38_06115 PF13476 AAA domain LMD38_06120 PF05580 SpoIVB peptidase S55 LMD38_06120 PF17820 PDZ domain LMD38_06125 PF08769 Sporulation initiation factor Spo0A C terminal LMD38_06125 PF00072 Response regulator receiver domain LMD38_06140 PF01541 GIY-YIG catalytic domain LMD38_06140 PF08459 UvrC Helix-hairpin-helix N-terminal LMD38_06205 PF02796 Helix-turn-helix domain of resolvase LMD38_06205 PF00239 Resolvase, N terminal domain LMD38_06225 PF14174 YycC-like protein LMD38_06230 PF03009 Glycerophosphoryl diester phosphodiesterase family LMD38_06235 PF11118 Protein of unknown function (DUF2627) LMD38_06240 PF00989 PAS fold LMD38_06240 PF02954 Bacterial regulatory protein, Fis family LMD38_06240 PF00158 Sigma-54 interaction domain LMD38_06245 PF01515 Phosphate acetyl/butaryl transferase LMD38_06250 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LMD38_06250 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LMD38_06255 PF00871 Acetokinase family LMD38_06260 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_06260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LMD38_06265 PF00676 Dehydrogenase E1 component LMD38_06270 PF02780 Transketolase, C-terminal domain LMD38_06270 PF02779 Transketolase, pyrimidine binding domain LMD38_06275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LMD38_06275 PF00364 Biotin-requiring enzyme LMD38_06275 PF02817 e3 binding domain LMD38_06280 PF01098 Cell cycle protein LMD38_06285 PF04239 Protein of unknown function (DUF421) LMD38_06290 PF00293 NUDIX domain LMD38_06290 PF09297 NADH pyrophosphatase zinc ribbon domain LMD38_06295 PF11208 Protein of unknown function (DUF2992) LMD38_06300 PF06491 Disulphide isomerase LMD38_06305 PF00497 Bacterial extracellular solute-binding proteins, family 3 LMD38_06310 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_06315 PF00005 ABC transporter LMD38_06320 PF06081 Aromatic acid exporter family member 1 LMD38_06320 PF11728 Putative aromatic acid exporter C-terminal domain LMD38_06325 PF03734 L,D-transpeptidase catalytic domain LMD38_06340 PF13302 Acetyltransferase (GNAT) domain LMD38_06345 PF07687 Peptidase dimerisation domain LMD38_06345 PF01546 Peptidase family M20/M25/M40 LMD38_06355 PF11799 impB/mucB/samB family C-terminal domain LMD38_06355 PF11798 IMS family HHH motif LMD38_06355 PF00817 impB/mucB/samB family LMD38_06360 PF02308 MgtC family LMD38_06365 PF00689 Cation transporting ATPase, C-terminus LMD38_06365 PF00690 Cation transporter/ATPase, N-terminus LMD38_06375 PF00753 Metallo-beta-lactamase superfamily LMD38_06375 PF12706 Beta-lactamase superfamily domain LMD38_06385 PF03315 Serine dehydratase beta chain LMD38_06385 PF01842 ACT domain LMD38_06390 PF03313 Serine dehydratase alpha chain LMD38_06395 PF14748 Pyrroline-5-carboxylate reductase dimerisation LMD38_06395 PF03807 NADP oxidoreductase coenzyme F420-dependent LMD38_06400 PF00753 Metallo-beta-lactamase superfamily LMD38_06405 PF00106 short chain dehydrogenase LMD38_06415 PF01118 Semialdehyde dehydrogenase, NAD binding domain LMD38_06415 PF02774 Semialdehyde dehydrogenase, dimerisation domain LMD38_06420 PF01960 ArgJ family LMD38_06425 PF00696 Amino acid kinase family LMD38_06430 PF00202 Aminotransferase class-III LMD38_06435 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LMD38_06435 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LMD38_06450 PF01037 Lrp/AsnC ligand binding domain LMD38_06450 PF13404 AsnC-type helix-turn-helix domain LMD38_06460 PF02872 5'-nucleotidase, C-terminal domain LMD38_06460 PF00149 Calcineurin-like phosphoesterase LMD38_06465 PF03553 Na+/H+ antiporter family LMD38_06475 PF00202 Aminotransferase class-III LMD38_06485 PF00155 Aminotransferase class I and II LMD38_06490 PF12697 Alpha/beta hydrolase family LMD38_06490 PF08241 Methyltransferase domain LMD38_06495 PF13847 Methyltransferase domain LMD38_06500 PF04055 Radical SAM superfamily LMD38_06500 PF06968 Biotin and Thiamin Synthesis associated domain LMD38_06510 PF00885 6,7-dimethyl-8-ribityllumazine synthase LMD38_06515 PF00925 GTP cyclohydrolase II LMD38_06515 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LMD38_06520 PF00677 Lumazine binding domain LMD38_06525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LMD38_06525 PF01872 RibD C-terminal domain LMD38_06535 PF10827 Protein of unknown function (DUF2552) LMD38_06540 PF12146 Serine aminopeptidase, S33 LMD38_06545 PF00583 Acetyltransferase (GNAT) family LMD38_06550 PF00356 Bacterial regulatory proteins, lacI family LMD38_06555 PF03553 Na+/H+ antiporter family LMD38_06555 PF13726 Na+-H+ antiporter family LMD38_06560 PF12146 Serine aminopeptidase, S33 LMD38_06570 PF02872 5'-nucleotidase, C-terminal domain LMD38_06570 PF00746 LPXTG cell wall anchor motif LMD38_06570 PF00149 Calcineurin-like phosphoesterase LMD38_06570 PF00565 Staphylococcal nuclease homologue LMD38_06580 PF13673 Acetyltransferase (GNAT) domain LMD38_06580 PF04229 GrpB protein LMD38_06585 PF00248 Aldo/keto reductase family LMD38_06590 PF00248 Aldo/keto reductase family LMD38_06595 PF13072 Mother cell inhibitor of FtsZ LMD38_06600 PF00293 NUDIX domain LMD38_06610 PF01944 Stage II sporulation protein M LMD38_06615 PF01475 Ferric uptake regulator family LMD38_06620 PF14004 Protein of unknown function (DUF4227) LMD38_06625 PF00589 Phage integrase family LMD38_06625 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_06635 PF01676 Metalloenzyme superfamily LMD38_06640 PF01048 Phosphorylase superfamily LMD38_06645 PF00591 Glycosyl transferase family, a/b domain LMD38_06645 PF02885 Glycosyl transferase family, helical bundle domain LMD38_06645 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LMD38_06650 PF01544 CorA-like Mg2+ transporter protein LMD38_06655 PF00860 Permease family LMD38_06665 PF01047 MarR family LMD38_06680 PF00005 ABC transporter LMD38_06685 PF00392 Bacterial regulatory proteins, gntR family LMD38_06690 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_06690 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_06695 PF01740 STAS domain LMD38_06700 PF13581 Histidine kinase-like ATPase domain LMD38_06705 PF04545 Sigma-70, region 4 LMD38_06705 PF04539 Sigma-70 region 3 LMD38_06705 PF04542 Sigma-70 region 2 LMD38_06710 PF00209 Sodium:neurotransmitter symporter family LMD38_06720 PF12164 Stage V sporulation protein AA LMD38_06725 PF13782 Stage V sporulation protein AB LMD38_06730 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LMD38_06735 PF07451 Stage V sporulation protein AD (SpoVAD) LMD38_06740 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LMD38_06745 PF14097 Stage V sporulation protein AE1 LMD38_06750 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_06765 PF06207 Protein of unknown function (DUF1002) LMD38_06770 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LMD38_06780 PF00583 Acetyltransferase (GNAT) family LMD38_06785 PF03745 Domain of unknown function (DUF309) LMD38_06795 PF02616 Segregation and condensation protein ScpA LMD38_06800 PF04079 Segregation and condensation complex subunit ScpB LMD38_06810 PF01979 Amidohydrolase family LMD38_06815 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LMD38_06820 PF00392 Bacterial regulatory proteins, gntR family LMD38_06820 PF07702 UTRA domain LMD38_06830 PF03123 CAT RNA binding domain LMD38_06830 PF00874 PRD domain LMD38_06835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LMD38_06835 PF00367 phosphotransferase system, EIIB LMD38_06835 PF02378 Phosphotransferase system, EIIC LMD38_06840 PF00381 PTS HPr component phosphorylation site LMD38_06845 PF05524 PEP-utilising enzyme, N-terminal LMD38_06845 PF00391 PEP-utilising enzyme, mobile domain LMD38_06845 PF02896 PEP-utilising enzyme, TIM barrel domain LMD38_06860 PF00881 Nitroreductase family LMD38_06865 PF00990 Diguanylate cyclase, GGDEF domain LMD38_06865 PF08448 PAS fold LMD38_06870 PF00144 Beta-lactamase LMD38_06875 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LMD38_06875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LMD38_06890 PF03079 ARD/ARD' family LMD38_06895 PF00596 Class II Aldolase and Adducin N-terminal domain LMD38_06905 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LMD38_06905 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain LMD38_06910 PF00155 Aminotransferase class I and II LMD38_06915 PF00795 Carbon-nitrogen hydrolase LMD38_06920 PF01636 Phosphotransferase enzyme family LMD38_06925 PF01008 Initiation factor 2 subunit family LMD38_06945 PF03551 Transcriptional regulator PadR-like family LMD38_06975 PF00293 NUDIX domain LMD38_06980 PF02803 Thiolase, C-terminal domain LMD38_06980 PF00108 Thiolase, N-terminal domain LMD38_06985 PF02463 RecF/RecN/SMC N terminal domain LMD38_07025 PF00005 ABC transporter LMD38_07025 PF17912 MalK OB fold domain LMD38_07025 PF03459 TOBE domain LMD38_07030 PF00128 Alpha amylase, catalytic domain LMD38_07030 PF16657 Maltogenic Amylase, C-terminal domain LMD38_07035 PF02903 Alpha amylase, N-terminal ig-like domain LMD38_07035 PF16657 Maltogenic Amylase, C-terminal domain LMD38_07035 PF00128 Alpha amylase, catalytic domain LMD38_07040 PF13416 Bacterial extracellular solute-binding protein LMD38_07045 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_07050 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_07055 PF00356 Bacterial regulatory proteins, lacI family LMD38_07055 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LMD38_07060 PF00155 Aminotransferase class I and II LMD38_07070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_07070 PF00512 His Kinase A (phospho-acceptor) domain LMD38_07080 PF14040 Deoxyribonuclease NucA/NucB LMD38_07090 PF08267 Cobalamin-independent synthase, N-terminal domain LMD38_07090 PF01717 Cobalamin-independent synthase, Catalytic domain LMD38_07100 PF01609 Transposase DDE domain LMD38_07105 PF07690 Major Facilitator Superfamily LMD38_07130 PF14177 YkyB-like protein LMD38_07135 PF02541 Ppx/GppA phosphatase family LMD38_07140 PF13090 Polyphosphate kinase C-terminal domain 2 LMD38_07140 PF17941 Polyphosphate kinase C-terminal domain 1 LMD38_07140 PF13089 Polyphosphate kinase N-terminal domain LMD38_07140 PF02503 Polyphosphate kinase middle domain LMD38_07150 PF00149 Calcineurin-like phosphoesterase LMD38_07150 PF10518 TAT (twin-arginine translocation) pathway signal sequence LMD38_07160 PF00563 EAL domain LMD38_07160 PF10388 EAL-domain associated signalling protein domain LMD38_07175 PF08796 Protein of unknown function (DUF1797) LMD38_07185 PF04308 Ribonuclease H-like LMD38_07200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_07200 PF03466 LysR substrate binding domain LMD38_07205 PF14602 Hexapeptide repeat of succinyl-transferase LMD38_07205 PF00132 Bacterial transferase hexapeptide (six repeats) LMD38_07205 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LMD38_07210 PF07687 Peptidase dimerisation domain LMD38_07210 PF01546 Peptidase family M20/M25/M40 LMD38_07220 PF02080 TrkA-C domain LMD38_07220 PF02254 TrkA-N domain LMD38_07225 PF00753 Metallo-beta-lactamase superfamily LMD38_07225 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LMD38_07225 PF17770 Ribonuclease J C-terminal domain LMD38_07230 PF07288 Protein of unknown function (DUF1447) LMD38_07240 PF01327 Polypeptide deformylase LMD38_07250 PF00676 Dehydrogenase E1 component LMD38_07255 PF02780 Transketolase, C-terminal domain LMD38_07255 PF02779 Transketolase, pyrimidine binding domain LMD38_07260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LMD38_07260 PF00364 Biotin-requiring enzyme LMD38_07260 PF02817 e3 binding domain LMD38_07265 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_07265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LMD38_07305 PF01276 Orn/Lys/Arg decarboxylase, major domain LMD38_07305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LMD38_07310 PF05256 Uncharacterised protein family (UPF0223) LMD38_07315 PF06335 Protein of unknown function (DUF1054) LMD38_07325 PF00459 Inositol monophosphatase family LMD38_07335 PF00009 Elongation factor Tu GTP binding domain LMD38_07335 PF03144 Elongation factor Tu domain 2 LMD38_07335 PF00679 Elongation factor G C-terminus LMD38_07335 PF14492 Elongation Factor G, domain II LMD38_07340 PF14036 YlaH-like protein LMD38_07350 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) LMD38_07360 PF02562 PhoH-like protein LMD38_07360 PF13638 PIN domain LMD38_07370 PF07408 Protein of unknown function (DUF1507) LMD38_07375 PF01098 Cell cycle protein LMD38_07380 PF02785 Biotin carboxylase C-terminal domain LMD38_07380 PF00289 Biotin carboxylase, N-terminal domain LMD38_07380 PF00364 Biotin-requiring enzyme LMD38_07380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LMD38_07380 PF00682 HMGL-like LMD38_07380 PF02436 Conserved carboxylase domain LMD38_07385 PF02628 Cytochrome oxidase assembly protein LMD38_07390 PF01040 UbiA prenyltransferase family LMD38_07395 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LMD38_07395 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LMD38_07395 PF00034 Cytochrome c LMD38_07400 PF00115 Cytochrome C and Quinol oxidase polypeptide I LMD38_07405 PF00510 Cytochrome c oxidase subunit III LMD38_07410 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LMD38_07415 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) LMD38_07425 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_07435 PF08868 YugN-like family LMD38_07440 PF00188 Cysteine-rich secretory protein family LMD38_07440 PF14504 CAP-associated N-terminal LMD38_07445 PF14071 Putative coat protein LMD38_07450 PF14003 YlbE-like protein LMD38_07455 PF00300 Histidine phosphatase superfamily (branch 1) LMD38_07460 PF06133 Control of competence regulator ComK, YlbF/YmcA LMD38_07465 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) LMD38_07480 PF01467 Cytidylyltransferase-like LMD38_07485 PF07670 Nucleoside recognition LMD38_07490 PF01734 Patatin-like phospholipase LMD38_07495 PF05362 Lon protease (S16) C-terminal proteolytic domain LMD38_07495 PF13180 PDZ domain LMD38_07500 PF05636 HIGH Nucleotidyl Transferase LMD38_07505 PF02620 Large ribosomal RNA subunit accumulation protein YceD LMD38_07510 PF01783 Ribosomal L32p protein family LMD38_07520 PF00583 Acetyltransferase (GNAT) family LMD38_07525 PF02558 Ketopantoate reductase PanE/ApbA LMD38_07525 PF08546 Ketopantoate reductase PanE/ApbA C terminal LMD38_07530 PF10079 Bacillithiol biosynthesis BshC LMD38_07535 PF01795 MraW methylase family LMD38_07540 PF04977 Septum formation initiator LMD38_07545 PF03793 PASTA domain LMD38_07545 PF03717 Penicillin-binding Protein dimerisation domain LMD38_07545 PF00905 Penicillin binding protein transpeptidase domain LMD38_07550 PF03717 Penicillin-binding Protein dimerisation domain LMD38_07550 PF03793 PASTA domain LMD38_07550 PF00905 Penicillin binding protein transpeptidase domain LMD38_07555 PF08245 Mur ligase middle domain LMD38_07555 PF02875 Mur ligase family, glutamate ligase domain LMD38_07555 PF01225 Mur ligase family, catalytic domain LMD38_07560 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LMD38_07560 PF00953 Glycosyl transferase family 4 LMD38_07565 PF08245 Mur ligase middle domain LMD38_07565 PF02875 Mur ligase family, glutamate ligase domain LMD38_07570 PF01098 Cell cycle protein LMD38_07575 PF04101 Glycosyltransferase family 28 C-terminal domain LMD38_07575 PF03033 Glycosyltransferase family 28 N-terminal domain LMD38_07580 PF01565 FAD binding domain LMD38_07580 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LMD38_07585 PF03799 Cell division protein FtsQ LMD38_07585 PF08478 POTRA domain, FtsQ-type LMD38_07590 PF02491 SHS2 domain inserted in FTSA LMD38_07595 PF00091 Tubulin/FtsZ family, GTPase domain LMD38_07595 PF12327 FtsZ family, C-terminal domain LMD38_07600 PF03419 Sporulation factor SpoIIGA LMD38_07605 PF04545 Sigma-70, region 4 LMD38_07605 PF04542 Sigma-70 region 2 LMD38_07610 PF04539 Sigma-70 region 3 LMD38_07610 PF04545 Sigma-70, region 4 LMD38_07610 PF04542 Sigma-70 region 2 LMD38_07615 PF05239 PRC-barrel domain LMD38_07620 PF02578 Multi-copper polyphenol oxidoreductase laccase LMD38_07625 PF01168 Alanine racemase, N-terminal domain LMD38_07630 PF04472 Cell division protein SepF LMD38_07635 PF02325 YGGT family LMD38_07640 PF01479 S4 domain LMD38_07640 PF17774 Putative RNA-binding domain in YlmH LMD38_07645 PF05103 DivIVA protein LMD38_07650 PF08264 Anticodon-binding domain of tRNA LMD38_07650 PF00133 tRNA synthetases class I (I, L, M and V) LMD38_07650 PF06827 Zinc finger found in FPG and IleRS LMD38_07660 PF01252 Signal peptidase (SPase) II LMD38_07665 PF01479 S4 domain LMD38_07665 PF00849 RNA pseudouridylate synthase LMD38_07670 PF00156 Phosphoribosyl transferase domain LMD38_07675 PF00860 Permease family LMD38_07680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LMD38_07680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LMD38_07685 PF01979 Amidohydrolase family LMD38_07690 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LMD38_07690 PF00117 Glutamine amidotransferase class-I LMD38_07695 PF02142 MGS-like domain LMD38_07695 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LMD38_07695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LMD38_07700 PF00175 Oxidoreductase NAD-binding domain LMD38_07700 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LMD38_07705 PF01180 Dihydroorotate dehydrogenase LMD38_07710 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LMD38_07715 PF00156 Phosphoribosyl transferase domain LMD38_07740 PF00557 Metallopeptidase family M24 LMD38_07740 PF01321 Creatinase/Prolidase N-terminal domain LMD38_07750 PF05670 NFACT protein RNA binding domain LMD38_07755 PF00689 Cation transporting ATPase, C-terminus LMD38_07755 PF00690 Cation transporter/ATPase, N-terminus LMD38_07760 PF08340 Domain of unknown function (DUF1732) LMD38_07760 PF03755 YicC-like family, N-terminal region LMD38_07765 PF04025 Domain of unknown function (DUF370) LMD38_07770 PF00625 Guanylate kinase LMD38_07775 PF01192 RNA polymerase Rpb6 LMD38_07780 PF02441 Flavoprotein LMD38_07780 PF04127 DNA / pantothenate metabolism flavoprotein LMD38_07785 PF04851 Type III restriction enzyme, res subunit LMD38_07785 PF00271 Helicase conserved C-terminal domain LMD38_07785 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LMD38_07785 PF18074 Primosomal protein N C-terminal domain LMD38_07785 PF17764 3′ DNA-binding domain (3′BD) LMD38_07790 PF01327 Polypeptide deformylase LMD38_07795 PF02911 Formyl transferase, C-terminal domain LMD38_07795 PF00551 Formyl transferase LMD38_07800 PF01029 NusB family LMD38_07800 PF01189 16S rRNA methyltransferase RsmB/F LMD38_07805 PF04055 Radical SAM superfamily LMD38_07815 PF00069 Protein kinase domain LMD38_07815 PF03793 PASTA domain LMD38_07820 PF03193 RsgA GTPase LMD38_07820 PF16745 RsgA N-terminal domain LMD38_07825 PF00834 Ribulose-phosphate 3 epimerase family LMD38_07830 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain LMD38_07830 PF04263 Thiamin pyrophosphokinase, catalytic domain LMD38_07835 PF08183 Stage V sporulation protein family LMD38_07840 PF00830 Ribosomal L28 family LMD38_07845 PF03780 Asp23 family, cell envelope-related function LMD38_07850 PF13684 Dihydroxyacetone kinase family LMD38_07850 PF02734 DAK2 domain LMD38_07855 PF00271 Helicase conserved C-terminal domain LMD38_07855 PF17191 RecG wedge domain LMD38_07855 PF00270 DEAD/DEAH box helicase LMD38_07860 PF03061 Thioesterase superfamily LMD38_07865 PF02504 Fatty acid synthesis protein LMD38_07870 PF00698 Acyl transferase domain LMD38_07880 PF00550 Phosphopantetheine attachment site LMD38_07885 PF00035 Double-stranded RNA binding motif LMD38_07885 PF14622 Ribonuclease-III-like LMD38_07890 PF06470 SMC proteins Flexible Hinge Domain LMD38_07890 PF02463 RecF/RecN/SMC N terminal domain LMD38_07895 PF00448 SRP54-type protein, GTPase domain LMD38_07895 PF02881 SRP54-type protein, helical bundle domain LMD38_07900 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LMD38_07905 PF00448 SRP54-type protein, GTPase domain LMD38_07905 PF02881 SRP54-type protein, helical bundle domain LMD38_07905 PF02978 Signal peptide binding domain LMD38_07910 PF00886 Ribosomal protein S16 LMD38_07920 PF05239 PRC-barrel domain LMD38_07920 PF01782 RimM N-terminal domain LMD38_07925 PF01746 tRNA (Guanine-1)-methyltransferase LMD38_07930 PF01245 Ribosomal protein L19 LMD38_07935 PF10502 Signal peptidase, peptidase S26 LMD38_07940 PF01926 50S ribosome-binding GTPase LMD38_07945 PF01351 Ribonuclease HII LMD38_07950 PF08442 ATP-grasp domain LMD38_07950 PF00549 CoA-ligase LMD38_07955 PF02629 CoA binding domain LMD38_07955 PF00549 CoA-ligase LMD38_07960 PF02481 DNA recombination-mediator protein A LMD38_07965 PF01131 DNA topoisomerase LMD38_07965 PF01396 Topoisomerase DNA binding C4 zinc finger LMD38_07965 PF01751 Toprim domain LMD38_07970 PF01134 Glucose inhibited division protein A LMD38_07975 PF00589 Phage integrase family LMD38_07975 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_07980 PF00227 Proteasome subunit LMD38_07985 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_07985 PF07724 AAA domain (Cdc48 subfamily) LMD38_07985 PF10431 C-terminal, D2-small domain, of ClpB protein LMD38_07990 PF06018 CodY GAF-like domain LMD38_07990 PF08222 CodY helix-turn-helix domain LMD38_07995 PF00318 Ribosomal protein S2 LMD38_08000 PF00889 Elongation factor TS LMD38_08005 PF00696 Amino acid kinase family LMD38_08010 PF01765 Ribosome recycling factor LMD38_08015 PF01255 Putative undecaprenyl diphosphate synthase LMD38_08025 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LMD38_08025 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LMD38_08025 PF13288 DXP reductoisomerase C-terminal domain LMD38_08030 PF17820 PDZ domain LMD38_08030 PF02163 Peptidase family M50 LMD38_08035 PF04073 Aminoacyl-tRNA editing domain LMD38_08035 PF03129 Anticodon binding domain LMD38_08035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LMD38_08040 PF14480 DNA polymerase III polC-type N-terminus I LMD38_08040 PF11490 DNA polymerase III polC-type N-terminus II LMD38_08040 PF14579 Helix-hairpin-helix motif LMD38_08040 PF07733 Bacterial DNA polymerase III alpha NTPase domain LMD38_08040 PF00929 Exonuclease LMD38_08040 PF02811 PHP domain LMD38_08040 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LMD38_08045 PF17384 RimP C-terminal SH3 domain LMD38_08045 PF02576 RimP N-terminal domain LMD38_08050 PF08529 NusA N-terminal domain LMD38_08050 PF00575 S1 RNA binding domain LMD38_08050 PF13184 NusA-like KH domain LMD38_08055 PF04296 Protein of unknown function (DUF448) LMD38_08060 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LMD38_08065 PF11987 Translation-initiation factor 2 LMD38_08065 PF04760 Translation initiation factor IF-2, N-terminal region LMD38_08065 PF00009 Elongation factor Tu GTP binding domain LMD38_08070 PF04456 Protein of unknown function (DUF503) LMD38_08075 PF02033 Ribosome-binding factor A LMD38_08080 PF16198 tRNA pseudouridylate synthase B C-terminal domain LMD38_08080 PF01509 TruB family pseudouridylate synthase (N terminal domain) LMD38_08085 PF06574 FAD synthetase LMD38_08085 PF01687 Riboflavin kinase LMD38_08090 PF00312 Ribosomal protein S15 LMD38_08095 PF03725 3' exoribonuclease family, domain 2 LMD38_08095 PF01138 3' exoribonuclease family, domain 1 LMD38_08095 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LMD38_08095 PF00575 S1 RNA binding domain LMD38_08095 PF00013 KH domain LMD38_08100 PF01522 Polysaccharide deacetylase LMD38_08105 PF00675 Insulinase (Peptidase family M16) LMD38_08105 PF05193 Peptidase M16 inactive domain LMD38_08110 PF05239 PRC-barrel domain LMD38_08115 PF16924 Dipicolinate synthase subunit A N-terminal domain LMD38_08115 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LMD38_08120 PF02441 Flavoprotein LMD38_08125 PF02774 Semialdehyde dehydrogenase, dimerisation domain LMD38_08125 PF01118 Semialdehyde dehydrogenase, NAD binding domain LMD38_08130 PF00696 Amino acid kinase family LMD38_08130 PF13840 ACT domain LMD38_08135 PF00701 Dihydrodipicolinate synthetase family LMD38_08140 PF17770 Ribonuclease J C-terminal domain LMD38_08140 PF00753 Metallo-beta-lactamase superfamily LMD38_08140 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LMD38_08145 PF00574 Clp protease LMD38_08150 PF14035 YlzJ-like protein LMD38_08155 PF17854 FtsK alpha domain LMD38_08155 PF09397 Ftsk gamma domain LMD38_08155 PF01580 FtsK/SpoIIIE family LMD38_08160 PF00392 Bacterial regulatory proteins, gntR family LMD38_08160 PF07702 UTRA domain LMD38_08165 PF02608 ABC transporter substrate-binding protein PnrA-like LMD38_08170 PF00005 ABC transporter LMD38_08175 PF02653 Branched-chain amino acid transport system / permease component LMD38_08180 PF02653 Branched-chain amino acid transport system / permease component LMD38_08185 PF05193 Peptidase M16 inactive domain LMD38_08190 PF05193 Peptidase M16 inactive domain LMD38_08190 PF00675 Insulinase (Peptidase family M16) LMD38_08200 PF11588 Protein of unknown function (DUF3243) LMD38_08205 PF11868 Protein of unknown function (DUF3388) LMD38_08210 PF13464 Domain of unknown function (DUF4115) LMD38_08215 PF01066 CDP-alcohol phosphatidyltransferase LMD38_08220 PF02464 Competence-damaged protein LMD38_08220 PF18146 Damage-inducible protein CinA KH domain LMD38_08220 PF00994 Probable molybdopterin binding domain LMD38_08235 PF01966 HD domain LMD38_08235 PF00013 KH domain LMD38_08235 PF12072 Domain of unknown function (DUF3552) LMD38_08240 PF13277 YmdB-like protein LMD38_08245 PF04232 Stage V sporulation protein S (SpoVS) LMD38_08250 PF01244 Membrane dipeptidase (Peptidase family M19) LMD38_08255 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LMD38_08255 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LMD38_08255 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LMD38_08260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LMD38_08265 PF04055 Radical SAM superfamily LMD38_08265 PF00919 Uncharacterized protein family UPF0004 LMD38_08265 PF01938 TRAM domain LMD38_08270 PF06133 Control of competence regulator ComK, YlbF/YmcA LMD38_08275 PF10628 Outer spore coat protein E (CotE) LMD38_08280 PF05188 MutS domain II LMD38_08280 PF01624 MutS domain I LMD38_08280 PF05190 MutS family domain IV LMD38_08280 PF00488 MutS domain V LMD38_08280 PF05192 MutS domain III LMD38_08285 PF08676 MutL C terminal dimerisation domain LMD38_08285 PF01119 DNA mismatch repair protein, C-terminal domain LMD38_08290 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LMD38_08300 PF00350 Dynamin family LMD38_08305 PF00884 Sulfatase LMD38_08315 PF07486 Cell Wall Hydrolase LMD38_08320 PF00388 Phosphatidylinositol-specific phospholipase C, X domain LMD38_08335 PF00392 Bacterial regulatory proteins, gntR family LMD38_08335 PF00155 Aminotransferase class I and II LMD38_08350 PF10787 Uncharacterised protein from bacillus cereus group LMD38_08375 PF00990 Diguanylate cyclase, GGDEF domain LMD38_08375 PF00563 EAL domain LMD38_08375 PF03707 Bacterial signalling protein N terminal repeat LMD38_08380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_08405 PF07687 Peptidase dimerisation domain LMD38_08405 PF01546 Peptidase family M20/M25/M40 LMD38_08410 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain LMD38_08410 PF00730 HhH-GPD superfamily base excision DNA repair protein LMD38_08415 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LMD38_08415 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LMD38_08420 PF12833 Helix-turn-helix domain LMD38_08420 PF02805 Metal binding domain of Ada LMD38_08430 PF01497 Periplasmic binding protein LMD38_08435 PF01032 FecCD transport family LMD38_08440 PF01032 FecCD transport family LMD38_08445 PF00005 ABC transporter LMD38_08450 PF00756 Putative esterase LMD38_08455 PF01022 Bacterial regulatory protein, arsR family LMD38_08460 PF00300 Histidine phosphatase superfamily (branch 1) LMD38_08470 PF01545 Cation efflux family LMD38_08470 PF16916 Dimerisation domain of Zinc Transporter LMD38_08480 PF02583 Metal-sensitive transcriptional repressor LMD38_08485 PF00403 Heavy-metal-associated domain LMD38_08490 PF00403 Heavy-metal-associated domain LMD38_08500 PF00216 Bacterial DNA-binding protein LMD38_08505 PF01226 Formate/nitrite transporter LMD38_08510 PF00149 Calcineurin-like phosphoesterase LMD38_08510 PF10518 TAT (twin-arginine translocation) pathway signal sequence LMD38_08515 PF00041 Fibronectin type III domain LMD38_08515 PF00704 Glycosyl hydrolases family 18 LMD38_08520 PF00324 Amino acid permease LMD38_08530 PF04238 Protein of unknown function (DUF420) LMD38_08535 PF00465 Iron-containing alcohol dehydrogenase LMD38_08540 PF00455 DeoR C terminal sensor domain LMD38_08540 PF08220 DeoR-like helix-turn-helix domain LMD38_08545 PF00294 pfkB family carbohydrate kinase LMD38_08550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LMD38_08550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LMD38_08555 PF01476 LysM domain LMD38_08555 PF06725 3D domain LMD38_08570 PF17209 Hfq protein LMD38_08585 PF17866 AAA lid domain LMD38_08585 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_08590 PF03458 UPF0126 domain LMD38_08595 PF01926 50S ribosome-binding GTPase LMD38_08595 PF16360 GTP-binding GTPase Middle Region LMD38_08595 PF13167 GTP-binding GTPase N-terminal LMD38_08600 PF06838 Methionine gamma-lyase LMD38_08605 PF13411 MerR HTH family regulatory protein LMD38_08610 PF03951 Glutamine synthetase, beta-Grasp domain LMD38_08610 PF00120 Glutamine synthetase, catalytic domain LMD38_08615 PF03551 Transcriptional regulator PadR-like family LMD38_08630 PF01726 LexA DNA binding domain LMD38_08630 PF00717 Peptidase S24-like LMD38_08635 PF00239 Resolvase, N terminal domain LMD38_08640 PF05979 Bacterial protein of unknown function (DUF896) LMD38_08645 PF02872 5'-nucleotidase, C-terminal domain LMD38_08645 PF00149 Calcineurin-like phosphoesterase LMD38_08655 PF00005 ABC transporter LMD38_08660 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_08665 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_08670 PF02780 Transketolase, C-terminal domain LMD38_08670 PF00456 Transketolase, thiamine diphosphate binding domain LMD38_08670 PF02779 Transketolase, pyrimidine binding domain LMD38_08675 PF10747 Sporulation inhibitor of replication protein SirA LMD38_08680 PF03672 Uncharacterised protein family (UPF0154) LMD38_08685 PF00664 ABC transporter transmembrane region LMD38_08685 PF00005 ABC transporter LMD38_08690 PF00664 ABC transporter transmembrane region LMD38_08690 PF00005 ABC transporter LMD38_08695 PF01183 Glycosyl hydrolases family 25 LMD38_08695 PF08239 Bacterial SH3 domain LMD38_08710 PF01925 Sulfite exporter TauE/SafE LMD38_08720 PF00293 NUDIX domain LMD38_08720 PF13344 Haloacid dehalogenase-like hydrolase LMD38_08725 PF04172 LrgB-like family LMD38_08730 PF03788 LrgA family LMD38_08735 PF03466 LysR substrate binding domain LMD38_08735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_08745 PF00005 ABC transporter LMD38_08755 PF01546 Peptidase family M20/M25/M40 LMD38_08755 PF07687 Peptidase dimerisation domain LMD38_08765 PF02683 Cytochrome C biogenesis protein transmembrane region LMD38_08770 PF07301 Protein of unknown function (DUF1453) LMD38_08780 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_08800 PF11084 Protein of unknown function (DUF2621) LMD38_08815 PF01209 ubiE/COQ5 methyltransferase family LMD38_08820 PF09021 HutP LMD38_08825 PF00221 Aromatic amino acid lyase LMD38_08830 PF01175 Urocanase Rossmann-like domain LMD38_08830 PF17392 Urocanase C-terminal domain LMD38_08830 PF17391 Urocanase N-terminal domain LMD38_08835 PF01979 Amidohydrolase family LMD38_08840 PF00491 Arginase family LMD38_08845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LMD38_08850 PF01645 Conserved region in glutamate synthase LMD38_08860 PF00474 Sodium:solute symporter family LMD38_08865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_08870 PF01738 Dienelactone hydrolase family LMD38_08875 PF13188 PAS domain LMD38_08875 PF00512 His Kinase A (phospho-acceptor) domain LMD38_08875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_08875 PF13426 PAS domain LMD38_08875 PF00989 PAS fold LMD38_08885 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_08885 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_08905 PF05532 CsbD-like LMD38_08925 PF01381 Helix-turn-helix LMD38_08930 PF00005 ABC transporter LMD38_08940 PF00501 AMP-binding enzyme LMD38_08940 PF13193 AMP-binding enzyme C-terminal domain LMD38_08945 PF02632 BioY family LMD38_08950 PF13193 AMP-binding enzyme C-terminal domain LMD38_08950 PF00501 AMP-binding enzyme LMD38_08955 PF00108 Thiolase, N-terminal domain LMD38_08955 PF02803 Thiolase, C-terminal domain LMD38_08960 PF18801 response regulator aspartate phosphatase H, N terminal LMD38_08975 PF00293 NUDIX domain LMD38_08975 PF13344 Haloacid dehalogenase-like hydrolase LMD38_08980 PF01411 tRNA synthetases class II (A) LMD38_08980 PF02272 DHHA1 domain LMD38_08980 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LMD38_08995 PF07690 Major Facilitator Superfamily LMD38_09005 PF08179 Small acid-soluble spore protein P family LMD38_09015 PF01522 Polysaccharide deacetylase LMD38_09025 PF00330 Aconitase family (aconitate hydratase) LMD38_09025 PF00694 Aconitase C-terminal domain LMD38_09030 PF00005 ABC transporter LMD38_09030 PF00664 ABC transporter transmembrane region LMD38_09040 PF00578 AhpC/TSA family LMD38_09045 PF11490 DNA polymerase III polC-type N-terminus II LMD38_09045 PF07733 Bacterial DNA polymerase III alpha NTPase domain LMD38_09045 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LMD38_09045 PF14579 Helix-hairpin-helix motif LMD38_09045 PF02811 PHP domain LMD38_09045 PF00929 Exonuclease LMD38_09045 PF01336 OB-fold nucleic acid binding domain LMD38_09050 PF13040 Fur-regulated basic protein B LMD38_09055 PF08177 Small acid-soluble spore protein N family LMD38_09065 PF00704 Glycosyl hydrolases family 18 LMD38_09065 PF01476 LysM domain LMD38_09070 PF03061 Thioesterase superfamily LMD38_09075 PF01521 Iron-sulphur cluster biosynthesis LMD38_09080 PF02660 Glycerol-3-phosphate acyltransferase LMD38_09085 PF13597 Anaerobic ribonucleoside-triphosphate reductase LMD38_09085 PF03477 ATP cone domain LMD38_09090 PF04055 Radical SAM superfamily LMD38_09095 PF00486 Transcriptional regulatory protein, C terminal LMD38_09095 PF00072 Response regulator receiver domain LMD38_09100 PF13180 PDZ domain LMD38_09105 PF13380 CoA binding domain LMD38_09110 PF00986 DNA gyrase B subunit, carboxyl terminus LMD38_09110 PF00204 DNA gyrase B LMD38_09110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_09110 PF01751 Toprim domain LMD38_09115 PF00521 DNA gyrase/topoisomerase IV, subunit A LMD38_09115 PF03989 DNA gyrase C-terminal domain, beta-propeller LMD38_09120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LMD38_09120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LMD38_09140 PF00005 ABC transporter LMD38_09140 PF13732 Domain of unknown function (DUF4162) LMD38_09150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_09155 PF04542 Sigma-70 region 2 LMD38_09155 PF08281 Sigma-70, region 4 LMD38_09165 PF03816 Cell envelope-related transcriptional attenuator domain LMD38_09170 PF00375 Sodium:dicarboxylate symporter family LMD38_09175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_09180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_09185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_09190 PF08241 Methyltransferase domain LMD38_09230 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_09235 PF00037 4Fe-4S binding domain LMD38_09235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LMD38_09235 PF00384 Molybdopterin oxidoreductase LMD38_09235 PF01568 Molydopterin dinucleotide binding domain LMD38_09235 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LMD38_09240 PF07849 Protein of unknown function (DUF1641) LMD38_09245 PF10057 Uncharacterized conserved protein (DUF2294) LMD38_09250 PF02634 FdhD/NarQ family LMD38_09255 PF06463 Molybdenum Cofactor Synthesis C LMD38_09255 PF04055 Radical SAM superfamily LMD38_09260 PF01226 Formate/nitrite transporter LMD38_09265 PF00899 ThiF family LMD38_09270 PF00994 Probable molybdopterin binding domain LMD38_09270 PF03454 MoeA C-terminal region (domain IV) LMD38_09270 PF03453 MoeA N-terminal region (domain I and II) LMD38_09275 PF02391 MoaE protein LMD38_09285 PF10609 NUBPL iron-transfer P-loop NTPase LMD38_09300 PF06961 Protein of unknown function (DUF1294) LMD38_09305 PF00892 EamA-like transporter family LMD38_09310 PF02681 Divergent PAP2 family LMD38_09315 PF13243 Squalene-hopene cyclase C-terminal domain LMD38_09315 PF13249 Squalene-hopene cyclase N-terminal domain LMD38_09320 PF14151 YfhD-like protein LMD38_09370 PF00474 Sodium:solute symporter family LMD38_09375 PF01156 Inosine-uridine preferring nucleoside hydrolase LMD38_09385 PF14698 Argininosuccinate lyase C-terminal LMD38_09385 PF00206 Lyase LMD38_09395 PF00106 short chain dehydrogenase LMD38_09405 PF00132 Bacterial transferase hexapeptide (six repeats) LMD38_09415 PF00293 NUDIX domain LMD38_09425 PF00258 Flavodoxin LMD38_09435 PF00313 'Cold-shock' DNA-binding domain LMD38_09455 PF13039 Protein of unknown function (DUF3900) LMD38_09455 PF13037 Domain of unknown function (DUF3898) LMD38_09465 PF04294 VanW like protein LMD38_09470 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_09475 PF00005 ABC transporter LMD38_09480 PF00497 Bacterial extracellular solute-binding proteins, family 3 LMD38_09485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_09500 PF02308 MgtC family LMD38_09505 PF08453 Peptidase family M9 N-terminal LMD38_09505 PF18496 Collagenase G catalytic helper subdomain LMD38_09505 PF01752 Collagenase LMD38_09540 PF01565 FAD binding domain LMD38_09540 PF02913 FAD linked oxidases, C-terminal domain LMD38_09545 PF01758 Sodium Bile acid symporter family LMD38_09555 PF04229 GrpB protein LMD38_09560 PF04299 Putative FMN-binding domain LMD38_09575 PF18801 response regulator aspartate phosphatase H, N terminal LMD38_09580 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LMD38_09585 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_09585 PF00107 Zinc-binding dehydrogenase LMD38_09590 PF01022 Bacterial regulatory protein, arsR family LMD38_09595 PF01494 FAD binding domain LMD38_09600 PF03009 Glycerophosphoryl diester phosphodiesterase family LMD38_09615 PF03466 LysR substrate binding domain LMD38_09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_09620 PF07690 Major Facilitator Superfamily LMD38_09630 PF00144 Beta-lactamase LMD38_09635 PF04371 Porphyromonas-type peptidyl-arginine deiminase LMD38_09650 PF01432 Peptidase family M3 LMD38_09650 PF08439 Oligopeptidase F LMD38_09655 PF00797 N-acetyltransferase LMD38_09660 PF00488 MutS domain V LMD38_09660 PF01713 Smr domain LMD38_09680 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_09680 PF00107 Zinc-binding dehydrogenase LMD38_09685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_09685 PF03466 LysR substrate binding domain LMD38_09695 PF10901 Protein of unknown function (DUF2690) LMD38_09700 PF01609 Transposase DDE domain LMD38_09710 PF01381 Helix-turn-helix LMD38_09715 PF01381 Helix-turn-helix LMD38_09730 PF00005 ABC transporter LMD38_09765 PF05675 Protein of unknown function (DUF817) LMD38_09770 PF01032 FecCD transport family LMD38_09775 PF01032 FecCD transport family LMD38_09780 PF01497 Periplasmic binding protein LMD38_09795 PF03600 Citrate transporter LMD38_09800 PF08830 Protein of unknown function (DUF1806) LMD38_09805 PF02585 GlcNAc-PI de-N-acetylase LMD38_09825 PF07690 Major Facilitator Superfamily LMD38_09830 PF00324 Amino acid permease LMD38_09835 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_09835 PF00107 Zinc-binding dehydrogenase LMD38_09840 PF00753 Metallo-beta-lactamase superfamily LMD38_09890 PF12650 Domain of unknown function (DUF3784) LMD38_09900 PF00753 Metallo-beta-lactamase superfamily LMD38_09925 PF13732 Domain of unknown function (DUF4162) LMD38_09925 PF00005 ABC transporter LMD38_09930 PF01061 ABC-2 type transporter LMD38_09935 PF05656 Protein of unknown function (DUF805) LMD38_09950 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 LMD38_09950 PF00535 Glycosyl transferase family 2 LMD38_09955 PF04542 Sigma-70 region 2 LMD38_09960 PF12791 Anti-sigma factor N-terminus LMD38_09965 PF01022 Bacterial regulatory protein, arsR family LMD38_09970 PF01638 HxlR-like helix-turn-helix LMD38_09975 PF02525 Flavodoxin-like fold LMD38_09980 PF00501 AMP-binding enzyme LMD38_09980 PF13193 AMP-binding enzyme C-terminal domain LMD38_09990 PF00106 short chain dehydrogenase LMD38_10000 PF02567 Phenazine biosynthesis-like protein LMD38_10030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LMD38_10030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LMD38_10035 PF07702 UTRA domain LMD38_10035 PF00392 Bacterial regulatory proteins, gntR family LMD38_10040 PF03960 ArsC family LMD38_10075 PF03928 Haem-degrading LMD38_10080 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LMD38_10080 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LMD38_10085 PF02780 Transketolase, C-terminal domain LMD38_10085 PF02779 Transketolase, pyrimidine binding domain LMD38_10085 PF00456 Transketolase, thiamine diphosphate binding domain LMD38_10090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LMD38_10090 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LMD38_10095 PF00923 Transaldolase/Fructose-6-phosphate aldolase LMD38_10100 PF02447 GntP family permease LMD38_10105 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LMD38_10105 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LMD38_10110 PF10282 Lactonase, 7-bladed beta-propeller LMD38_10115 PF06906 Protein of unknown function (DUF1272) LMD38_10120 PF00857 Isochorismatase family LMD38_10125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_10125 PF03466 LysR substrate binding domain LMD38_10130 PF00805 Pentapeptide repeats (8 copies) LMD38_10140 PF00892 EamA-like transporter family LMD38_10155 PF01370 NAD dependent epimerase/dehydratase family LMD38_10160 PF08484 C-methyltransferase C-terminal domain LMD38_10160 PF08421 Putative zinc binding domain LMD38_10165 PF16363 GDP-mannose 4,6 dehydratase LMD38_10170 PF00483 Nucleotidyl transferase LMD38_10180 PF13411 MerR HTH family regulatory protein LMD38_10185 PF00571 CBS domain LMD38_10185 PF03471 Transporter associated domain LMD38_10185 PF01595 Cyclin M transmembrane N-terminal domain LMD38_10195 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_10210 PF07690 Major Facilitator Superfamily LMD38_10225 PF08241 Methyltransferase domain LMD38_10255 PF01594 AI-2E family transporter LMD38_10265 PF00579 tRNA synthetases class I (W and Y) LMD38_10270 PF14602 Hexapeptide repeat of succinyl-transferase LMD38_10270 PF12464 Maltose acetyltransferase LMD38_10280 PF00480 ROK family LMD38_10285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_10290 PF00293 NUDIX domain LMD38_10290 PF13344 Haloacid dehalogenase-like hydrolase LMD38_10310 PF13350 Tyrosine phosphatase family LMD38_10320 PF13419 Haloacid dehalogenase-like hydrolase LMD38_10345 PF00005 ABC transporter LMD38_10365 PF00391 PEP-utilising enzyme, mobile domain LMD38_10365 PF00224 Pyruvate kinase, barrel domain LMD38_10365 PF02887 Pyruvate kinase, alpha/beta domain LMD38_10385 PF03129 Anticodon binding domain LMD38_10385 PF13393 Histidyl-tRNA synthetase LMD38_10390 PF04073 Aminoacyl-tRNA editing domain LMD38_10400 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_10415 PF01510 N-acetylmuramoyl-L-alanine amidase LMD38_10415 PF01476 LysM domain LMD38_10415 PF01471 Putative peptidoglycan binding domain LMD38_10425 PF03606 C4-dicarboxylate anaerobic carrier LMD38_10430 PF03737 Aldolase/RraA LMD38_10445 PF02361 Cobalt transport protein LMD38_10450 PF00005 ABC transporter LMD38_10475 PF02525 Flavodoxin-like fold LMD38_10485 PF02667 Short chain fatty acid transporter LMD38_10500 PF07690 Major Facilitator Superfamily LMD38_10505 PF01047 MarR family LMD38_10510 PF12697 Alpha/beta hydrolase family LMD38_10520 PF07690 Major Facilitator Superfamily LMD38_10525 PF14044 NETI protein LMD38_10570 PF04740 LXG domain of WXG superfamily LMD38_10795 PF01510 N-acetylmuramoyl-L-alanine amidase LMD38_10795 PF01471 Putative peptidoglycan binding domain LMD38_10795 PF01476 LysM domain LMD38_10810 PF01804 Penicillin amidase LMD38_10815 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_10815 PF17862 AAA+ lid domain LMD38_10815 PF06480 FtsH Extracellular LMD38_10815 PF01434 Peptidase family M41 LMD38_10845 PF00266 Aminotransferase class-V LMD38_10850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LMD38_10850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LMD38_10850 PF01842 ACT domain LMD38_10895 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_10895 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_10900 PF04299 Putative FMN-binding domain LMD38_10905 PF00583 Acetyltransferase (GNAT) family LMD38_10910 PF01047 MarR family LMD38_10920 PF00072 Response regulator receiver domain LMD38_10920 PF00486 Transcriptional regulatory protein, C terminal LMD38_10925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_10925 PF00512 His Kinase A (phospho-acceptor) domain LMD38_10925 PF00672 HAMP domain LMD38_10940 PF02687 FtsX-like permease family LMD38_10945 PF00005 ABC transporter LMD38_10960 PF04072 Leucine carboxyl methyltransferase LMD38_10975 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_11045 PF09962 Uncharacterized conserved protein (DUF2196) LMD38_11055 PF07690 Major Facilitator Superfamily LMD38_11060 PF00667 FAD binding domain LMD38_11060 PF00258 Flavodoxin LMD38_11060 PF00175 Oxidoreductase NAD-binding domain LMD38_11060 PF00067 Cytochrome P450 LMD38_11065 PF12802 MarR family LMD38_11075 PF08803 Putative mono-oxygenase ydhR LMD38_11090 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_11120 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_11125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_11150 PF00440 Bacterial regulatory proteins, tetR family LMD38_11155 PF07690 Major Facilitator Superfamily LMD38_11160 PF18665 Tetracyclin repressor-like, C-terminal domain LMD38_11160 PF00440 Bacterial regulatory proteins, tetR family LMD38_11165 PF07993 Male sterility protein LMD38_11165 PF00550 Phosphopantetheine attachment site LMD38_11210 PF00005 ABC transporter LMD38_11230 PF01872 RibD C-terminal domain LMD38_11240 PF01022 Bacterial regulatory protein, arsR family LMD38_11245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_11250 PF01758 Sodium Bile acid symporter family LMD38_11255 PF01451 Low molecular weight phosphotyrosine protein phosphatase LMD38_11260 PF00356 Bacterial regulatory proteins, lacI family LMD38_11265 PF05025 RbsD / FucU transport protein family LMD38_11270 PF00005 ABC transporter LMD38_11275 PF02653 Branched-chain amino acid transport system / permease component LMD38_11285 PF00596 Class II Aldolase and Adducin N-terminal domain LMD38_11290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LMD38_11290 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LMD38_11295 PF07882 L-fucose isomerase, second N-terminal domain LMD38_11295 PF02952 L-fucose isomerase, C-terminal domain LMD38_11295 PF07881 L-fucose isomerase, first N-terminal domain LMD38_11300 PF00596 Class II Aldolase and Adducin N-terminal domain LMD38_11325 PF12996 DUF based on E. rectale Gene description (DUF3880) LMD38_11330 PF00561 alpha/beta hydrolase fold LMD38_11335 PF07282 Putative transposase DNA-binding domain LMD38_11335 PF01385 Probable transposase LMD38_11335 PF12323 Helix-turn-helix domain LMD38_11340 PF01040 UbiA prenyltransferase family LMD38_11355 PF10057 Uncharacterized conserved protein (DUF2294) LMD38_11360 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LMD38_11360 PF00361 Proton-conducting membrane transporter LMD38_11365 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) LMD38_11375 PF07859 alpha/beta hydrolase fold LMD38_11385 PF07690 Major Facilitator Superfamily LMD38_11395 PF00875 DNA photolyase LMD38_11395 PF03441 FAD binding domain of DNA photolyase LMD38_11400 PF03073 TspO/MBR family LMD38_11415 PF13529 Peptidase_C39 like family LMD38_11420 PF00072 Response regulator receiver domain LMD38_11420 PF00486 Transcriptional regulatory protein, C terminal LMD38_11425 PF00672 HAMP domain LMD38_11425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_11425 PF18698 Histidine kinase sensor domain LMD38_11425 PF00512 His Kinase A (phospho-acceptor) domain LMD38_11425 PF00989 PAS fold LMD38_11435 PF00107 Zinc-binding dehydrogenase LMD38_11435 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_11435 PF13823 Alcohol dehydrogenase GroES-associated LMD38_11440 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_11445 PF11553 Protein of unknown function (DUF3231) LMD38_11450 PF00753 Metallo-beta-lactamase superfamily LMD38_11455 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LMD38_11460 PF00391 PEP-utilising enzyme, mobile domain LMD38_11460 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LMD38_11465 PF00440 Bacterial regulatory proteins, tetR family LMD38_11475 PF02915 Rubrerythrin LMD38_11485 PF10903 Protein of unknown function (DUF2691) LMD38_11500 PF07670 Nucleoside recognition LMD38_11515 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LMD38_11515 PF02770 Acyl-CoA dehydrogenase, middle domain LMD38_11515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LMD38_11520 PF07454 Stage II sporulation protein P (SpoIIP) LMD38_11525 PF03932 CutC family LMD38_11530 PF10502 Signal peptidase, peptidase S26 LMD38_11535 PF09339 IclR helix-turn-helix domain LMD38_11535 PF01614 Bacterial transcriptional regulator LMD38_11540 PF02682 Carboxyltransferase domain, subdomain C and D LMD38_11545 PF02626 Carboxyltransferase domain, subdomain A and B LMD38_11550 PF03746 LamB/YcsF family LMD38_11565 PF01470 Pyroglutamyl peptidase LMD38_11570 PF02146 Sir2 family LMD38_11580 PF00905 Penicillin binding protein transpeptidase domain LMD38_11580 PF03717 Penicillin-binding Protein dimerisation domain LMD38_11585 PF10502 Signal peptidase, peptidase S26 LMD38_11595 PF00293 NUDIX domain LMD38_11610 PF02567 Phenazine biosynthesis-like protein LMD38_11620 PF13411 MerR HTH family regulatory protein LMD38_11620 PF06445 GyrI-like small molecule binding domain LMD38_11630 PF00324 Amino acid permease LMD38_11640 PF01925 Sulfite exporter TauE/SafE LMD38_11670 PF13031 Protein of unknown function (DUF3892) LMD38_11675 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LMD38_11685 PF00155 Aminotransferase class I and II LMD38_11685 PF00392 Bacterial regulatory proteins, gntR family LMD38_11690 PF00892 EamA-like transporter family LMD38_11705 PF00583 Acetyltransferase (GNAT) family LMD38_11710 PF12833 Helix-turn-helix domain LMD38_11730 PF00005 ABC transporter LMD38_11755 PF00005 ABC transporter LMD38_11760 PF16363 GDP-mannose 4,6 dehydratase LMD38_11770 PF00293 NUDIX domain LMD38_11780 PF00679 Elongation factor G C-terminus LMD38_11780 PF03764 Elongation factor G, domain IV LMD38_11780 PF00009 Elongation factor Tu GTP binding domain LMD38_11780 PF14492 Elongation Factor G, domain II LMD38_11785 PF01047 MarR family LMD38_11790 PF00881 Nitroreductase family LMD38_11810 PF14436 Bacterial EndoU nuclease LMD38_11810 PF04740 LXG domain of WXG superfamily LMD38_11840 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family LMD38_11860 PF09346 SMI1 / KNR4 family (SUKH-1) LMD38_11950 PF07726 ATPase family associated with various cellular activities (AAA) LMD38_11950 PF17863 AAA lid domain LMD38_11970 PF00144 Beta-lactamase LMD38_11980 PF14602 Hexapeptide repeat of succinyl-transferase LMD38_11980 PF12464 Maltose acetyltransferase LMD38_11985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_11985 PF03466 LysR substrate binding domain LMD38_11990 PF01979 Amidohydrolase family LMD38_11990 PF13382 Adenine deaminase C-terminal domain LMD38_12010 PF06628 Catalase-related immune-responsive LMD38_12010 PF00199 Catalase LMD38_12015 PF00202 Aminotransferase class-III LMD38_12020 PF07690 Major Facilitator Superfamily LMD38_12035 PF07726 ATPase family associated with various cellular activities (AAA) LMD38_12035 PF17863 AAA lid domain LMD38_12060 PF12681 Glyoxalase-like domain LMD38_12065 PF13302 Acetyltransferase (GNAT) domain LMD38_12075 PF04397 LytTr DNA-binding domain LMD38_12075 PF00072 Response regulator receiver domain LMD38_12085 PF10086 YhfC intramembrane metalloprotease LMD38_12095 PF13443 Cro/C1-type HTH DNA-binding domain LMD38_12100 PF11188 Protein of unknown function (DUF2975) LMD38_12105 PF00245 Alkaline phosphatase LMD38_12110 PF05547 Immune inhibitor A peptidase M6 LMD38_12115 PF00487 Fatty acid desaturase LMD38_12135 PF00324 Amino acid permease LMD38_12140 PF09339 IclR helix-turn-helix domain LMD38_12140 PF01614 Bacterial transcriptional regulator LMD38_12145 PF01546 Peptidase family M20/M25/M40 LMD38_12150 PF14748 Pyrroline-5-carboxylate reductase dimerisation LMD38_12150 PF03807 NADP oxidoreductase coenzyme F420-dependent LMD38_12155 PF00696 Amino acid kinase family LMD38_12155 PF01472 PUA domain LMD38_12160 PF00171 Aldehyde dehydrogenase family LMD38_12165 PF07662 Na+ dependent nucleoside transporter C-terminus LMD38_12165 PF01773 Na+ dependent nucleoside transporter N-terminus LMD38_12180 PF03992 Antibiotic biosynthesis monooxygenase LMD38_12200 PF13302 Acetyltransferase (GNAT) domain LMD38_12205 PF01791 DeoC/LacD family aldolase LMD38_12215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LMD38_12215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LMD38_12220 PF04198 Putative sugar-binding domain LMD38_12220 PF00325 Bacterial regulatory proteins, crp family LMD38_12225 PF00005 ABC transporter LMD38_12230 PF02653 Branched-chain amino acid transport system / permease component LMD38_12235 PF02653 Branched-chain amino acid transport system / permease component LMD38_12240 PF13407 Periplasmic binding protein domain LMD38_12245 PF06039 Malate:quinone oxidoreductase (Mqo) LMD38_12255 PF00440 Bacterial regulatory proteins, tetR family LMD38_12260 PF07690 Major Facilitator Superfamily LMD38_12265 PF08031 Berberine and berberine like LMD38_12265 PF01565 FAD binding domain LMD38_12280 PF06725 3D domain LMD38_12280 PF01476 LysM domain LMD38_12295 PF01636 Phosphotransferase enzyme family LMD38_12320 PF01817 Chorismate mutase type II LMD38_12320 PF00793 DAHP synthetase I family LMD38_12325 PF01264 Chorismate synthase LMD38_12330 PF00155 Aminotransferase class I and II LMD38_12335 PF01842 ACT domain LMD38_12335 PF02153 Prephenate dehydrogenase LMD38_12340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LMD38_12350 PF16295 Tetracyclin repressor-like, C-terminal domain LMD38_12350 PF00440 Bacterial regulatory proteins, tetR family LMD38_12355 PF03176 MMPL family LMD38_12370 PF00005 ABC transporter LMD38_12370 PF12848 ABC transporter LMD38_12375 PF00884 Sulfatase LMD38_12380 PF03741 Integral membrane protein TerC family LMD38_12385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LMD38_12395 PF03611 PTS system sugar-specific permease component LMD38_12405 PF01522 Polysaccharide deacetylase LMD38_12410 PF08713 DNA alkylation repair enzyme LMD38_12430 PF12867 DinB superfamily LMD38_12435 PF13536 Putative multidrug resistance efflux transporter LMD38_12455 PF02522 Aminoglycoside 3-N-acetyltransferase LMD38_12475 PF13344 Haloacid dehalogenase-like hydrolase LMD38_12475 PF00293 NUDIX domain LMD38_12495 PF00005 ABC transporter LMD38_12500 PF09084 NMT1/THI5 like LMD38_12505 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_12510 PF00296 Luciferase-like monooxygenase LMD38_12525 PF01594 AI-2E family transporter LMD38_12580 PF00005 ABC transporter LMD38_12600 PF03630 Fumble LMD38_12605 PF07977 FabA-like domain LMD38_12610 PF00155 Aminotransferase class I and II LMD38_12645 PF08241 Methyltransferase domain LMD38_12655 PF01156 Inosine-uridine preferring nucleoside hydrolase LMD38_12660 PF04226 Transglycosylase associated protein LMD38_12680 PF07690 Major Facilitator Superfamily LMD38_12685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_12685 PF12793 Sugar transport-related sRNA regulator N-term LMD38_12690 PF13171 Protein of unknown function (DUF4004) LMD38_12695 PF04519 Polymer-forming cytoskeletal LMD38_12705 PF07690 Major Facilitator Superfamily LMD38_12730 PF02645 Uncharacterised protein, DegV family COG1307 LMD38_12740 PF08439 Oligopeptidase F LMD38_12740 PF01432 Peptidase family M3 LMD38_12745 PF03808 Glycosyl transferase WecB/TagA/CpsF family LMD38_12755 PF01048 Phosphorylase superfamily LMD38_12775 PF00072 Response regulator receiver domain LMD38_12775 PF00486 Transcriptional regulatory protein, C terminal LMD38_12780 PF16736 Single Cache-like LMD38_12780 PF00989 PAS fold LMD38_12780 PF00512 His Kinase A (phospho-acceptor) domain LMD38_12780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_12785 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LMD38_12785 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LMD38_12810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LMD38_12820 PF01965 DJ-1/PfpI family LMD38_12835 PF13378 Enolase C-terminal domain-like LMD38_12835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LMD38_12840 PF00877 NlpC/P60 family LMD38_12840 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain LMD38_12845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_12850 PF00117 Glutamine amidotransferase class-I LMD38_12850 PF13302 Acetyltransferase (GNAT) domain LMD38_12850 PF13673 Acetyltransferase (GNAT) domain LMD38_12850 PF03352 Methyladenine glycosylase LMD38_12850 PF00958 GMP synthase C terminal domain LMD38_12855 PF04914 DltD protein LMD38_12870 PF09335 SNARE associated Golgi protein LMD38_12875 PF08876 Domain of unknown function (DUF1836) LMD38_12890 PF04324 BFD-like [2Fe-2S] binding domain LMD38_12890 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_12900 PF04324 BFD-like [2Fe-2S] binding domain LMD38_12900 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_12905 PF02954 Bacterial regulatory protein, Fis family LMD38_12905 PF13188 PAS domain LMD38_12905 PF00158 Sigma-54 interaction domain LMD38_12910 PF01266 FAD dependent oxidoreductase LMD38_12915 PF05544 Proline racemase LMD38_12920 PF05544 Proline racemase LMD38_12925 PF00701 Dihydrodipicolinate synthetase family LMD38_12930 PF00171 Aldehyde dehydrogenase family LMD38_12935 PF01235 Sodium:alanine symporter family LMD38_12940 PF02627 Carboxymuconolactone decarboxylase family LMD38_12945 PF03193 RsgA GTPase LMD38_12955 PF18416 N-acetylglucosamine binding protein domain 2 LMD38_12955 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LMD38_12960 PF02833 DHHA2 domain LMD38_12960 PF01368 DHH family LMD38_12985 PF01510 N-acetylmuramoyl-L-alanine amidase LMD38_12985 PF12123 N-acetylmuramoyl-l-alanine amidase LMD38_13005 PF00270 DEAD/DEAH box helicase LMD38_13005 PF00271 Helicase conserved C-terminal domain LMD38_13005 PF16124 RecQ zinc-binding LMD38_13005 PF00570 HRDC domain LMD38_13005 PF09382 RQC domain LMD38_13025 PF13538 UvrD-like helicase C-terminal domain LMD38_13065 PF04237 YjbR LMD38_13070 PF08241 Methyltransferase domain LMD38_13075 PF10990 Protein of unknown function (DUF2809) LMD38_13090 PF03781 Sulfatase-modifying factor enzyme 1 LMD38_13095 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LMD38_13100 PF13673 Acetyltransferase (GNAT) domain LMD38_13105 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LMD38_13120 PF00574 Clp protease LMD38_13125 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LMD38_13130 PF00005 ABC transporter LMD38_13130 PF00571 CBS domain LMD38_13135 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_13160 PF00293 NUDIX domain LMD38_13160 PF09297 NADH pyrophosphatase zinc ribbon domain LMD38_13170 PF00485 Phosphoribulokinase / Uridine kinase family LMD38_13180 PF00106 short chain dehydrogenase LMD38_13190 PF00676 Dehydrogenase E1 component LMD38_13195 PF02779 Transketolase, pyrimidine binding domain LMD38_13195 PF02780 Transketolase, C-terminal domain LMD38_13200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LMD38_13200 PF00364 Biotin-requiring enzyme LMD38_13200 PF02817 e3 binding domain LMD38_13205 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_13205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LMD38_13220 PF00455 DeoR C terminal sensor domain LMD38_13220 PF08220 DeoR-like helix-turn-helix domain LMD38_13225 PF13302 Acetyltransferase (GNAT) domain LMD38_13235 PF02954 Bacterial regulatory protein, Fis family LMD38_13235 PF01590 GAF domain LMD38_13235 PF00158 Sigma-54 interaction domain LMD38_13260 PF00293 NUDIX domain LMD38_13260 PF13344 Haloacid dehalogenase-like hydrolase LMD38_13270 PF00266 Aminotransferase class-V LMD38_13275 PF04199 Putative cyclase LMD38_13280 PF03301 Tryptophan 2,3-dioxygenase LMD38_13300 PF07486 Cell Wall Hydrolase LMD38_13300 PF01471 Putative peptidoglycan binding domain LMD38_13305 PF14620 YpeB sporulation LMD38_13305 PF03413 Peptidase propeptide and YPEB domain LMD38_13310 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LMD38_13325 PF06081 Aromatic acid exporter family member 1 LMD38_13350 PF00561 alpha/beta hydrolase fold LMD38_13355 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_13355 PF00107 Zinc-binding dehydrogenase LMD38_13360 PF00155 Aminotransferase class I and II LMD38_13360 PF00392 Bacterial regulatory proteins, gntR family LMD38_13365 PF00892 EamA-like transporter family LMD38_13370 PF08299 Bacterial dnaA protein helix-turn-helix LMD38_13370 PF11638 DnaA N-terminal domain LMD38_13370 PF00308 Bacterial dnaA protein LMD38_13375 PF00344 SecY translocase LMD38_13390 PF02868 Thermolysin metallopeptidase, alpha-helical domain LMD38_13390 PF07504 Fungalysin/Thermolysin Propeptide Motif LMD38_13390 PF01447 Thermolysin metallopeptidase, catalytic domain LMD38_13390 PF03413 Peptidase propeptide and YPEB domain LMD38_13395 PF00128 Alpha amylase, catalytic domain LMD38_13395 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LMD38_13395 PF03714 Bacterial pullanase-associated domain LMD38_13400 PF01569 PAP2 superfamily LMD38_13410 PF13419 Haloacid dehalogenase-like hydrolase LMD38_13435 PF01266 FAD dependent oxidoreductase LMD38_13475 PF01541 GIY-YIG catalytic domain LMD38_13485 PF02673 Bacitracin resistance protein BacA LMD38_13500 PF12867 DinB superfamily LMD38_13510 PF08000 Bacterial PH domain LMD38_13515 PF01734 Patatin-like phospholipase LMD38_13540 PF09234 Domain of unknown function (DUF1963) LMD38_13550 PF12706 Beta-lactamase superfamily domain LMD38_13560 PF00293 NUDIX domain LMD38_13565 PF02768 DNA polymerase III beta subunit, C-terminal domain LMD38_13565 PF02767 DNA polymerase III beta subunit, central domain LMD38_13565 PF00712 DNA polymerase III beta subunit, N-terminal domain LMD38_13570 PF09297 NADH pyrophosphatase zinc ribbon domain LMD38_13570 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LMD38_13570 PF00293 NUDIX domain LMD38_13575 PF07690 Major Facilitator Superfamily LMD38_13585 PF00144 Beta-lactamase LMD38_13595 PF00293 NUDIX domain LMD38_13610 PF01156 Inosine-uridine preferring nucleoside hydrolase LMD38_13620 PF00892 EamA-like transporter family LMD38_13625 PF00155 Aminotransferase class I and II LMD38_13625 PF00392 Bacterial regulatory proteins, gntR family LMD38_13645 PF03009 Glycerophosphoryl diester phosphodiesterase family LMD38_13660 PF07690 Major Facilitator Superfamily LMD38_13705 PF08361 MAATS-type transcriptional repressor, C-terminal region LMD38_13705 PF00440 Bacterial regulatory proteins, tetR family LMD38_13710 PF00905 Penicillin binding protein transpeptidase domain LMD38_13710 PF03717 Penicillin-binding Protein dimerisation domain LMD38_13710 PF03793 PASTA domain LMD38_13715 PF01569 PAP2 superfamily LMD38_13720 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_13720 PF00107 Zinc-binding dehydrogenase LMD38_13725 PF00512 His Kinase A (phospho-acceptor) domain LMD38_13725 PF18719 ArlS sensor domain LMD38_13725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_13730 PF00486 Transcriptional regulatory protein, C terminal LMD38_13730 PF00072 Response regulator receiver domain LMD38_13740 PF04229 GrpB protein LMD38_13750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_13750 PF00512 His Kinase A (phospho-acceptor) domain LMD38_13765 PF12558 ATP-binding cassette cobalt transporter LMD38_13765 PF00005 ABC transporter LMD38_13770 PF07155 ECF-type riboflavin transporter, S component LMD38_13775 PF01177 Asp/Glu/Hydantoin racemase LMD38_13780 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LMD38_13785 PF03717 Penicillin-binding Protein dimerisation domain LMD38_13785 PF00905 Penicillin binding protein transpeptidase domain LMD38_13790 PF13188 PAS domain LMD38_13790 PF00512 His Kinase A (phospho-acceptor) domain LMD38_13790 PF00989 PAS fold LMD38_13790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_13790 PF13426 PAS domain LMD38_13795 PF07690 Major Facilitator Superfamily LMD38_13830 PF00067 Cytochrome P450 LMD38_13840 PF07561 Domain of Unknown Function (DUF1540) LMD38_13845 PF00132 Bacterial transferase hexapeptide (six repeats) LMD38_13855 PF00067 Cytochrome P450 LMD38_13905 PF01695 IstB-like ATP binding protein LMD38_13910 PF02796 Helix-turn-helix domain of resolvase LMD38_13910 PF00665 Integrase core domain LMD38_14035 PF03070 TENA/THI-4/PQQC family LMD38_14040 PF07478 D-ala D-ala ligase C-terminus LMD38_14040 PF01820 D-ala D-ala ligase N-terminus LMD38_14045 PF00155 Aminotransferase class I and II LMD38_14045 PF00392 Bacterial regulatory proteins, gntR family LMD38_14050 PF01842 ACT domain LMD38_14050 PF00742 Homoserine dehydrogenase LMD38_14050 PF03447 Homoserine dehydrogenase, NAD binding domain LMD38_14070 PF02687 FtsX-like permease family LMD38_14075 PF00005 ABC transporter LMD38_14080 PF00005 ABC transporter LMD38_14080 PF12848 ABC transporter LMD38_14100 PF01609 Transposase DDE domain LMD38_14105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_14110 PF00072 Response regulator receiver domain LMD38_14110 PF00486 Transcriptional regulatory protein, C terminal LMD38_14115 PF03069 Acetamidase/Formamidase family LMD38_14120 PF07486 Cell Wall Hydrolase LMD38_14125 PF01921 tRNA synthetases class I (K) LMD38_14135 PF08450 SMP-30/Gluconolactonase/LRE-like region LMD38_14155 PF04239 Protein of unknown function (DUF421) LMD38_14180 PF00392 Bacterial regulatory proteins, gntR family LMD38_14180 PF00155 Aminotransferase class I and II LMD38_14195 PF12833 Helix-turn-helix domain LMD38_14210 PF00005 ABC transporter LMD38_14210 PF13732 Domain of unknown function (DUF4162) LMD38_14235 PF07690 Major Facilitator Superfamily LMD38_14240 PF17755 UvrA DNA-binding domain LMD38_14240 PF17760 UvrA interaction domain LMD38_14240 PF00005 ABC transporter LMD38_14260 PF01447 Thermolysin metallopeptidase, catalytic domain LMD38_14260 PF03413 Peptidase propeptide and YPEB domain LMD38_14260 PF07504 Fungalysin/Thermolysin Propeptide Motif LMD38_14260 PF02868 Thermolysin metallopeptidase, alpha-helical domain LMD38_14280 PF01048 Phosphorylase superfamily LMD38_14290 PF01966 HD domain LMD38_14295 PF00072 Response regulator receiver domain LMD38_14295 PF00486 Transcriptional regulatory protein, C terminal LMD38_14300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_14300 PF00512 His Kinase A (phospho-acceptor) domain LMD38_14305 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_14305 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_14310 PF05163 DinB family LMD38_14320 PF00485 Phosphoribulokinase / Uridine kinase family LMD38_14335 PF16177 Acetyl-coenzyme A synthetase N-terminus LMD38_14335 PF13193 AMP-binding enzyme C-terminal domain LMD38_14335 PF00501 AMP-binding enzyme LMD38_14340 PF01039 Carboxyl transferase domain LMD38_14345 PF00378 Enoyl-CoA hydratase/isomerase LMD38_14350 PF00682 HMGL-like LMD38_14355 PF00364 Biotin-requiring enzyme LMD38_14360 PF02785 Biotin carboxylase C-terminal domain LMD38_14360 PF00289 Biotin carboxylase, N-terminal domain LMD38_14360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LMD38_14365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LMD38_14365 PF02770 Acyl-CoA dehydrogenase, middle domain LMD38_14365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LMD38_14380 PF00440 Bacterial regulatory proteins, tetR family LMD38_14380 PF08359 YsiA-like protein, C-terminal region LMD38_14390 PF00005 ABC transporter LMD38_14400 PF00149 Calcineurin-like phosphoesterase LMD38_14410 PF00905 Penicillin binding protein transpeptidase domain LMD38_14410 PF03717 Penicillin-binding Protein dimerisation domain LMD38_14415 PF00905 Penicillin binding protein transpeptidase domain LMD38_14415 PF03717 Penicillin-binding Protein dimerisation domain LMD38_14425 PF08281 Sigma-70, region 4 LMD38_14425 PF04542 Sigma-70 region 2 LMD38_14430 PF05223 NTF2-like N-terminal transpeptidase domain LMD38_14430 PF03717 Penicillin-binding Protein dimerisation domain LMD38_14430 PF00905 Penicillin binding protein transpeptidase domain LMD38_14440 PF07687 Peptidase dimerisation domain LMD38_14440 PF01546 Peptidase family M20/M25/M40 LMD38_14460 PF14171 Toxin SpoIISA, type II toxin-antitoxin system LMD38_14465 PF00300 Histidine phosphatase superfamily (branch 1) LMD38_14470 PF01047 MarR family LMD38_14475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LMD38_14475 PF00205 Thiamine pyrophosphate enzyme, central domain LMD38_14475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LMD38_14480 PF08241 Methyltransferase domain LMD38_14490 PF03848 Tellurite resistance protein TehB LMD38_14490 PF09313 Domain of unknown function (DUF1971) LMD38_14495 PF00005 ABC transporter LMD38_14495 PF02687 FtsX-like permease family LMD38_14495 PF12704 MacB-like periplasmic core domain LMD38_14510 PF00440 Bacterial regulatory proteins, tetR family LMD38_14510 PF17932 Tetracyclin repressor-like, C-terminal domain LMD38_14515 PF00271 Helicase conserved C-terminal domain LMD38_14515 PF00270 DEAD/DEAH box helicase LMD38_14540 PF07690 Major Facilitator Superfamily LMD38_14545 PF01047 MarR family LMD38_14550 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_14555 PF00266 Aminotransferase class-V LMD38_14560 PF02660 Glycerol-3-phosphate acyltransferase LMD38_14565 PF01869 BadF/BadG/BcrA/BcrD ATPase family LMD38_14570 PF03702 Anhydro-N-acetylmuramic acid kinase LMD38_14580 PF02378 Phosphotransferase system, EIIC LMD38_14590 PF02638 Glycosyl hydrolase-like 10 LMD38_14650 PF07883 Cupin domain LMD38_14650 PF01381 Helix-turn-helix LMD38_14670 PF00664 ABC transporter transmembrane region LMD38_14670 PF00005 ABC transporter LMD38_14675 PF00664 ABC transporter transmembrane region LMD38_14675 PF00005 ABC transporter LMD38_14695 PF02774 Semialdehyde dehydrogenase, dimerisation domain LMD38_14695 PF01118 Semialdehyde dehydrogenase, NAD binding domain LMD38_14700 PF03466 LysR substrate binding domain LMD38_14700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_14725 PF00313 'Cold-shock' DNA-binding domain LMD38_14735 PF13302 Acetyltransferase (GNAT) domain LMD38_14740 PF08241 Methyltransferase domain LMD38_14750 PF01593 Flavin containing amine oxidoreductase LMD38_14755 PF00561 alpha/beta hydrolase fold LMD38_14775 PF00583 Acetyltransferase (GNAT) family LMD38_14800 PF03176 MMPL family LMD38_14815 PF01047 MarR family LMD38_14865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LMD38_14865 PF00205 Thiamine pyrophosphate enzyme, central domain LMD38_14865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LMD38_14875 PF07690 Major Facilitator Superfamily LMD38_14880 PF12146 Serine aminopeptidase, S33 LMD38_14890 PF00005 ABC transporter LMD38_14895 PF02824 TGS domain LMD38_14895 PF03129 Anticodon binding domain LMD38_14895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LMD38_14895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LMD38_14900 PF00849 RNA pseudouridylate synthase LMD38_14900 PF01479 S4 domain LMD38_14905 PF16291 Domain of unknown function (DUF4937 LMD38_14915 PF01235 Sodium:alanine symporter family LMD38_14920 PF00082 Subtilase family LMD38_14925 PF05163 DinB family LMD38_14935 PF00216 Bacterial DNA-binding protein LMD38_14950 PF07690 Major Facilitator Superfamily LMD38_14955 PF03621 MbtH-like protein LMD38_14960 PF13193 AMP-binding enzyme C-terminal domain LMD38_14960 PF00668 Condensation domain LMD38_14960 PF00550 Phosphopantetheine attachment site LMD38_14960 PF00501 AMP-binding enzyme LMD38_14960 PF00975 Thioesterase domain LMD38_14965 PF00857 Isochorismatase family LMD38_14965 PF00550 Phosphopantetheine attachment site LMD38_14970 PF00501 AMP-binding enzyme LMD38_14970 PF13193 AMP-binding enzyme C-terminal domain LMD38_14975 PF00425 chorismate binding enzyme LMD38_14980 PF00106 short chain dehydrogenase LMD38_14985 PF07690 Major Facilitator Superfamily LMD38_14995 PF01022 Bacterial regulatory protein, arsR family LMD38_15005 PF13476 AAA domain LMD38_15010 PF12320 Type 5 capsule protein repressor C-terminal domain LMD38_15010 PF00149 Calcineurin-like phosphoesterase LMD38_15015 PF10763 Protein of unknown function (DUF2584) LMD38_15025 PF00378 Enoyl-CoA hydratase/isomerase LMD38_15030 PF01810 LysE type translocator LMD38_15035 PF00171 Aldehyde dehydrogenase family LMD38_15040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LMD38_15040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LMD38_15045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LMD38_15045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LMD38_15045 PF02770 Acyl-CoA dehydrogenase, middle domain LMD38_15055 PF03972 MmgE/PrpD family LMD38_15060 PF00285 Citrate synthase, C-terminal domain LMD38_15065 PF01521 Iron-sulphur cluster biosynthesis LMD38_15070 PF07690 Major Facilitator Superfamily LMD38_15080 PF00912 Transglycosylase LMD38_15080 PF00905 Penicillin binding protein transpeptidase domain LMD38_15110 PF10676 Spore germination protein gerPA/gerPF LMD38_15155 PF08281 Sigma-70, region 4 LMD38_15155 PF04542 Sigma-70 region 2 LMD38_15190 PF03592 Terminase small subunit LMD38_15190 PF10668 Phage terminase small subunit LMD38_15200 PF00085 Thioredoxin LMD38_15205 PF01545 Cation efflux family LMD38_15205 PF16916 Dimerisation domain of Zinc Transporter LMD38_15210 PF01569 PAP2 superfamily LMD38_15220 PF08239 Bacterial SH3 domain LMD38_15220 PF00069 Protein kinase domain LMD38_15230 PF14162 YozD-like protein LMD38_15245 PF06855 YozE SAM-like fold LMD38_15250 PF14122 YokU-like protein, putative antitoxin LMD38_15255 PF12544 Lysine-2,3-aminomutase LMD38_15260 PF00158 Sigma-54 interaction domain LMD38_15260 PF13426 PAS domain LMD38_15260 PF02954 Bacterial regulatory protein, Fis family LMD38_15265 PF00583 Acetyltransferase (GNAT) family LMD38_15270 PF01546 Peptidase family M20/M25/M40 LMD38_15270 PF07687 Peptidase dimerisation domain LMD38_15275 PF01144 Coenzyme A transferase LMD38_15280 PF01144 Coenzyme A transferase LMD38_15285 PF00202 Aminotransferase class-III LMD38_15295 PF09385 Histidine kinase N terminal LMD38_15300 PF07997 Protein of unknown function (DUF1694) LMD38_15305 PF00171 Aldehyde dehydrogenase family LMD38_15310 PF00571 CBS domain LMD38_15310 PF03471 Transporter associated domain LMD38_15310 PF01595 Cyclin M transmembrane N-terminal domain LMD38_15340 PF13520 Amino acid permease LMD38_15345 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_15350 PF00571 CBS domain LMD38_15350 PF00005 ABC transporter LMD38_15365 PF03358 NADPH-dependent FMN reductase LMD38_15385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LMD38_15385 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LMD38_15390 PF02447 GntP family permease LMD38_15395 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LMD38_15395 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LMD38_15400 PF01037 Lrp/AsnC ligand binding domain LMD38_15425 PF00107 Zinc-binding dehydrogenase LMD38_15425 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_15430 PF01418 Helix-turn-helix domain, rpiR family LMD38_15430 PF01380 SIS domain LMD38_15435 PF11954 Domain of unknown function (DUF3471) LMD38_15435 PF00144 Beta-lactamase LMD38_15440 PF00072 Response regulator receiver domain LMD38_15440 PF00196 Bacterial regulatory proteins, luxR family LMD38_15445 PF13185 GAF domain LMD38_15445 PF07730 Histidine kinase LMD38_15450 PF00924 Mechanosensitive ion channel LMD38_15455 PF00011 Hsp20/alpha crystallin family LMD38_15460 PF00293 NUDIX domain LMD38_15465 PF00857 Isochorismatase family LMD38_15475 PF00881 Nitroreductase family LMD38_15480 PF01063 Amino-transferase class IV LMD38_15485 PF01497 Periplasmic binding protein LMD38_15500 PF00733 Asparagine synthase LMD38_15500 PF13537 Glutamine amidotransferase domain LMD38_15505 PF00011 Hsp20/alpha crystallin family LMD38_15510 PF02630 SCO1/SenC LMD38_15520 PF02645 Uncharacterised protein, DegV family COG1307 LMD38_15530 PF00902 Sec-independent protein translocase protein (TatC) LMD38_15535 PF02416 mttA/Hcf106 family LMD38_15540 PF03006 Haemolysin-III related LMD38_15545 PF01553 Acyltransferase LMD38_15550 PF02525 Flavodoxin-like fold LMD38_15555 PF05223 NTF2-like N-terminal transpeptidase domain LMD38_15555 PF00905 Penicillin binding protein transpeptidase domain LMD38_15555 PF03717 Penicillin-binding Protein dimerisation domain LMD38_15560 PF00186 Dihydrofolate reductase LMD38_15565 PF00303 Thymidylate synthase LMD38_15570 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain LMD38_15570 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain LMD38_15570 PF08531 Alpha-L-rhamnosidase N-terminal domain LMD38_15570 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain LMD38_15575 PF00144 Beta-lactamase LMD38_15575 PF07930 D-aminopeptidase, domain B LMD38_15585 PF13419 Haloacid dehalogenase-like hydrolase LMD38_15590 PF14005 YpjP-like protein LMD38_15595 PF05975 Bacterial ABC transporter protein EcsB LMD38_15600 PF00005 ABC transporter LMD38_15615 PF00583 Acetyltransferase (GNAT) family LMD38_15620 PF01980 tRNA-methyltransferase O LMD38_15625 PF01177 Asp/Glu/Hydantoin racemase LMD38_15630 PF00465 Iron-containing alcohol dehydrogenase LMD38_15640 PF13419 Haloacid dehalogenase-like hydrolase LMD38_15645 PF10997 Alternate to MurJ LMD38_15660 PF00209 Sodium:neurotransmitter symporter family LMD38_15665 PF00152 tRNA synthetases class II (D, K and N) LMD38_15665 PF01336 OB-fold nucleic acid binding domain LMD38_15675 PF01609 Transposase DDE domain LMD38_15695 PF00133 tRNA synthetases class I (I, L, M and V) LMD38_15695 PF08264 Anticodon-binding domain of tRNA LMD38_15720 PF00750 tRNA synthetases class I (R) LMD38_15720 PF03485 Arginyl tRNA synthetase N terminal domain LMD38_15720 PF05746 DALR anticodon binding domain LMD38_15725 PF04445 Putative SAM-dependent methyltransferase LMD38_15730 PF06491 Disulphide isomerase LMD38_15740 PF13769 Virulence factor LMD38_15740 PF08712 Scaffold protein Nfu/NifU N terminal LMD38_15745 PF01494 FAD binding domain LMD38_15755 PF00436 Single-strand binding protein family LMD38_15770 PF00005 ABC transporter LMD38_15770 PF16326 ABC transporter C-terminal domain LMD38_15770 PF12848 ABC transporter LMD38_15775 PF01966 HD domain LMD38_15785 PF04232 Stage V sporulation protein S (SpoVS) LMD38_15830 PF17863 AAA lid domain LMD38_15830 PF07726 ATPase family associated with various cellular activities (AAA) LMD38_15835 PF01882 Protein of unknown function DUF58 LMD38_15840 PF13559 Domain of unknown function (DUF4129) LMD38_15840 PF01841 Transglutaminase-like superfamily LMD38_15840 PF11992 Domain of unknown function (DUF3488) LMD38_15845 PF00255 Glutathione peroxidase LMD38_15855 PF00258 Flavodoxin LMD38_15855 PF01613 Flavin reductase like domain LMD38_15870 PF04542 Sigma-70 region 2 LMD38_15870 PF08281 Sigma-70, region 4 LMD38_15875 PF00107 Zinc-binding dehydrogenase LMD38_15875 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_15885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_15890 PF01261 Xylose isomerase-like TIM barrel LMD38_15895 PF00271 Helicase conserved C-terminal domain LMD38_15895 PF00270 DEAD/DEAH box helicase LMD38_15905 PF01268 Formate--tetrahydrofolate ligase LMD38_15910 PF01209 ubiE/COQ5 methyltransferase family LMD38_15935 PF09579 Sporulation protein YtfJ (Spore_YtfJ) LMD38_16025 PF01580 FtsK/SpoIIIE family LMD38_16025 PF12538 DNA transporter LMD38_16030 PF10140 WXG100 protein secretion system (Wss), protein YukC LMD38_16035 PF08817 WXG100 protein secretion system (Wss), protein YukD LMD38_16050 PF06013 Proteins of 100 residues with WXG LMD38_16065 PF00583 Acetyltransferase (GNAT) family LMD38_16095 PF00392 Bacterial regulatory proteins, gntR family LMD38_16095 PF00155 Aminotransferase class I and II LMD38_16100 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_16100 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_16105 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LMD38_16120 PF13847 Methyltransferase domain LMD38_16125 PF01168 Alanine racemase, N-terminal domain LMD38_16125 PF00842 Alanine racemase, C-terminal domain LMD38_16140 PF00300 Histidine phosphatase superfamily (branch 1) LMD38_16180 PF02374 Anion-transporting ATPase LMD38_16185 PF06953 Arsenical resistance operon trans-acting repressor ArsD LMD38_16190 PF01451 Low molecular weight phosphotyrosine protein phosphatase LMD38_16195 PF01022 Bacterial regulatory protein, arsR family LMD38_16205 PF01758 Sodium Bile acid symporter family LMD38_16250 PF07690 Major Facilitator Superfamily LMD38_16255 PF01425 Amidase LMD38_16265 PF02557 D-alanyl-D-alanine carboxypeptidase LMD38_16275 PF07454 Stage II sporulation protein P (SpoIIP) LMD38_16295 PF01588 Putative tRNA binding domain LMD38_16300 PF05525 Branched-chain amino acid transport protein LMD38_16315 PF00571 CBS domain LMD38_16315 PF03471 Transporter associated domain LMD38_16315 PF01595 Cyclin M transmembrane N-terminal domain LMD38_16320 PF04306 Protein of unknown function (DUF456) LMD38_16325 PF13460 NAD(P)H-binding LMD38_16340 PF13091 PLD-like domain LMD38_16350 PF03061 Thioesterase superfamily LMD38_16355 PF09323 Domain of unknown function (DUF1980) LMD38_16360 PF03773 Predicted permease LMD38_16370 PF14667 Polysaccharide biosynthesis C-terminal domain LMD38_16370 PF01943 Polysaccharide biosynthesis protein LMD38_16375 PF09335 SNARE associated Golgi protein LMD38_16380 PF00293 NUDIX domain LMD38_16385 PF08757 CotH kinase protein LMD38_16395 PF00300 Histidine phosphatase superfamily (branch 1) LMD38_16405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_16410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_16420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LMD38_16420 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LMD38_16425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LMD38_16430 PF13460 NAD(P)H-binding LMD38_16440 PF01297 Zinc-uptake complex component A periplasmic LMD38_16440 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LMD38_16445 PF00583 Acetyltransferase (GNAT) family LMD38_16450 PF02492 CobW/HypB/UreG, nucleotide-binding domain LMD38_16450 PF07683 Cobalamin synthesis protein cobW C-terminal domain LMD38_16455 PF00248 Aldo/keto reductase family LMD38_16460 PF13302 Acetyltransferase (GNAT) domain LMD38_16465 PF01593 Flavin containing amine oxidoreductase LMD38_16475 PF00296 Luciferase-like monooxygenase LMD38_16485 PF00210 Ferritin-like domain LMD38_16505 PF02743 Cache domain LMD38_16505 PF00672 HAMP domain LMD38_16505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_16510 PF03193 RsgA GTPase LMD38_16530 PF07690 Major Facilitator Superfamily LMD38_16535 PF00248 Aldo/keto reductase family LMD38_16540 PF01022 Bacterial regulatory protein, arsR family LMD38_16545 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LMD38_16545 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LMD38_16550 PF00754 F5/8 type C domain LMD38_16550 PF18080 Galactose mutarotase-like fold domain LMD38_16550 PF17974 Galactose-binding domain-like LMD38_16550 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal LMD38_16550 PF17451 Glycosyl hydrolase 101 beta sandwich domain LMD38_16550 PF04650 YSIRK type signal peptide LMD38_16550 PF12905 Endo-alpha-N-acetylgalactosaminidase LMD38_16555 PF01791 DeoC/LacD family aldolase LMD38_16560 PF00294 pfkB family carbohydrate kinase LMD38_16565 PF01979 Amidohydrolase family LMD38_16570 PF01380 SIS domain LMD38_16575 PF00480 ROK family LMD38_16585 PF17385 Lacto-N-biose phosphorylase central domain LMD38_16585 PF17386 Lacto-N-biose phosphorylase C-terminal domain LMD38_16585 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain LMD38_16590 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_16595 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_16600 PF01547 Bacterial extracellular solute-binding protein LMD38_16605 PF12833 Helix-turn-helix domain LMD38_16610 PF13556 PucR C-terminal helix-turn-helix domain LMD38_16615 PF00005 ABC transporter LMD38_16615 PF17912 MalK OB fold domain LMD38_16615 PF03459 TOBE domain LMD38_16620 PF00082 Subtilase family LMD38_16625 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LMD38_16625 PF18277 AbrB C-terminal domain LMD38_16630 PF02687 FtsX-like permease family LMD38_16635 PF02540 NAD synthase LMD38_16640 PF00293 NUDIX domain LMD38_16640 PF13344 Haloacid dehalogenase-like hydrolase LMD38_16665 PF01734 Patatin-like phospholipase LMD38_16675 PF00155 Aminotransferase class I and II LMD38_16675 PF00392 Bacterial regulatory proteins, gntR family LMD38_16680 PF01810 LysE type translocator LMD38_16685 PF07690 Major Facilitator Superfamily LMD38_16690 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_16695 PF00583 Acetyltransferase (GNAT) family LMD38_16700 PF02308 MgtC family LMD38_16710 PF01522 Polysaccharide deacetylase LMD38_16720 PF03816 Cell envelope-related transcriptional attenuator domain LMD38_16735 PF00288 GHMP kinases N terminal domain LMD38_16735 PF08544 GHMP kinases C terminal LMD38_16740 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_16745 PF01842 ACT domain LMD38_16745 PF03447 Homoserine dehydrogenase, NAD binding domain LMD38_16745 PF00742 Homoserine dehydrogenase LMD38_16765 PF00293 NUDIX domain LMD38_16775 PF01522 Polysaccharide deacetylase LMD38_16780 PF04439 Streptomycin adenylyltransferase LMD38_16785 PF01596 O-methyltransferase LMD38_16790 PF00106 short chain dehydrogenase LMD38_16800 PF00989 PAS fold LMD38_16800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_16800 PF16736 Single Cache-like LMD38_16800 PF00512 His Kinase A (phospho-acceptor) domain LMD38_16805 PF00072 Response regulator receiver domain LMD38_16805 PF00486 Transcriptional regulatory protein, C terminal LMD38_16810 PF00664 ABC transporter transmembrane region LMD38_16810 PF00005 ABC transporter LMD38_16820 PF01476 LysM domain LMD38_16820 PF00877 NlpC/P60 family LMD38_16835 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_16835 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_16865 PF00132 Bacterial transferase hexapeptide (six repeats) LMD38_16870 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LMD38_16875 PF00535 Glycosyl transferase family 2 LMD38_16885 PF00664 ABC transporter transmembrane region LMD38_16885 PF00005 ABC transporter LMD38_16890 PF00664 ABC transporter transmembrane region LMD38_16890 PF00005 ABC transporter LMD38_16895 PF02322 Cytochrome bd terminal oxidase subunit II LMD38_16900 PF01654 Cytochrome bd terminal oxidase subunit I LMD38_16910 PF01047 MarR family LMD38_16920 PF14552 Tautomerase enzyme LMD38_16930 PF03466 LysR substrate binding domain LMD38_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_16940 PF02653 Branched-chain amino acid transport system / permease component LMD38_16945 PF00005 ABC transporter LMD38_16950 PF00005 ABC transporter LMD38_16950 PF12399 Branched-chain amino acid ATP-binding cassette transporter LMD38_16965 PF01436 NHL repeat LMD38_16965 PF08450 SMP-30/Gluconolactonase/LRE-like region LMD38_16965 PF00069 Protein kinase domain LMD38_16970 PF01609 Transposase DDE domain LMD38_16975 PF00072 Response regulator receiver domain LMD38_16975 PF00486 Transcriptional regulatory protein, C terminal LMD38_16980 PF00672 HAMP domain LMD38_16980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_16980 PF00512 His Kinase A (phospho-acceptor) domain LMD38_16990 PF02557 D-alanyl-D-alanine carboxypeptidase LMD38_17010 PF01609 Transposase DDE domain LMD38_17020 PF00580 UvrD/REP helicase N-terminal domain LMD38_17020 PF13361 UvrD-like helicase C-terminal domain LMD38_17025 PF02463 RecF/RecN/SMC N terminal domain LMD38_17035 PF02492 CobW/HypB/UreG, nucleotide-binding domain LMD38_17035 PF07683 Cobalamin synthesis protein cobW C-terminal domain LMD38_17040 PF01593 Flavin containing amine oxidoreductase LMD38_17045 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LMD38_17045 PF00056 lactate/malate dehydrogenase, NAD binding domain LMD38_17050 PF01594 AI-2E family transporter LMD38_17055 PF01425 Amidase LMD38_17060 PF00881 Nitroreductase family LMD38_17065 PF01323 DSBA-like thioredoxin domain LMD38_17070 PF02082 Transcriptional regulator LMD38_17075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_17075 PF03466 LysR substrate binding domain LMD38_17080 PF00892 EamA-like transporter family LMD38_17085 PF07987 Domain of unkown function (DUF1775) LMD38_17090 PF04234 CopC domain LMD38_17090 PF05425 Copper resistance protein D LMD38_17090 PF13115 YtkA-like LMD38_17100 PF05525 Branched-chain amino acid transport protein LMD38_17105 PF02525 Flavodoxin-like fold LMD38_17115 PF07690 Major Facilitator Superfamily LMD38_17125 PF01131 DNA topoisomerase LMD38_17125 PF01751 Toprim domain LMD38_17125 PF01396 Topoisomerase DNA binding C4 zinc finger LMD38_17125 PF13342 C-terminal repeat of topoisomerase LMD38_17135 PF00394 Multicopper oxidase LMD38_17135 PF07731 Multicopper oxidase LMD38_17135 PF07732 Multicopper oxidase LMD38_17140 PF00557 Metallopeptidase family M24 LMD38_17140 PF05195 Aminopeptidase P, N-terminal domain LMD38_17145 PF05979 Bacterial protein of unknown function (DUF896) LMD38_17150 PF07301 Protein of unknown function (DUF1453) LMD38_17160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LMD38_17165 PF02885 Glycosyl transferase family, helical bundle domain LMD38_17165 PF00591 Glycosyl transferase family, a/b domain LMD38_17165 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LMD38_17170 PF01773 Na+ dependent nucleoside transporter N-terminus LMD38_17170 PF07662 Na+ dependent nucleoside transporter C-terminus LMD38_17175 PF01791 DeoC/LacD family aldolase LMD38_17180 PF04198 Putative sugar-binding domain LMD38_17195 PF05791 Bacillus haemolytic enterotoxin (HBL) LMD38_17200 PF05791 Bacillus haemolytic enterotoxin (HBL) LMD38_17210 PF13520 Amino acid permease LMD38_17220 PF08546 Ketopantoate reductase PanE/ApbA C terminal LMD38_17220 PF02558 Ketopantoate reductase PanE/ApbA LMD38_17230 PF17773 UPF0176 acylphosphatase like domain LMD38_17230 PF00581 Rhodanese-like domain LMD38_17230 PF12368 Rhodanase C-terminal LMD38_17235 PF01566 Natural resistance-associated macrophage protein LMD38_17250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_17250 PF00512 His Kinase A (phospho-acceptor) domain LMD38_17255 PF00072 Response regulator receiver domain LMD38_17255 PF00486 Transcriptional regulatory protein, C terminal LMD38_17260 PF13302 Acetyltransferase (GNAT) domain LMD38_17265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_17275 PF01979 Amidohydrolase family LMD38_17290 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LMD38_17290 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LMD38_17295 PF04397 LytTr DNA-binding domain LMD38_17295 PF00072 Response regulator receiver domain LMD38_17310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LMD38_17320 PF07690 Major Facilitator Superfamily LMD38_17335 PF09587 Bacterial capsule synthesis protein PGA_cap LMD38_17345 PF00585 C-terminal regulatory domain of Threonine dehydratase LMD38_17345 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_17350 PF00920 Dehydratase family LMD38_17355 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LMD38_17355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LMD38_17365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LMD38_17365 PF00205 Thiamine pyrophosphate enzyme, central domain LMD38_17365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LMD38_17370 PF01063 Amino-transferase class IV LMD38_17380 PF01625 Peptide methionine sulfoxide reductase LMD38_17395 PF04239 Protein of unknown function (DUF421) LMD38_17405 PF01522 Polysaccharide deacetylase LMD38_17405 PF03422 Carbohydrate binding module (family 6) LMD38_17405 PF00457 Glycosyl hydrolases family 11 LMD38_17410 PF00209 Sodium:neurotransmitter symporter family LMD38_17415 PF01943 Polysaccharide biosynthesis protein LMD38_17415 PF14667 Polysaccharide biosynthesis C-terminal domain LMD38_17430 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_17435 PF07690 Major Facilitator Superfamily LMD38_17440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_17445 PF13167 GTP-binding GTPase N-terminal LMD38_17445 PF16360 GTP-binding GTPase Middle Region LMD38_17445 PF01926 50S ribosome-binding GTPase LMD38_17455 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LMD38_17455 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LMD38_17460 PF07690 Major Facilitator Superfamily LMD38_17470 PF07690 Major Facilitator Superfamily LMD38_17475 PF03551 Transcriptional regulator PadR-like family LMD38_17475 PF10400 Virulence activator alpha C-term LMD38_17480 PF03976 Polyphosphate kinase 2 (PPK2) LMD38_17485 PF00480 ROK family LMD38_17490 PF00294 pfkB family carbohydrate kinase LMD38_17495 PF01116 Fructose-bisphosphate aldolase class-II LMD38_17500 PF01979 Amidohydrolase family LMD38_17505 PF01380 SIS domain LMD38_17510 PF00392 Bacterial regulatory proteins, gntR family LMD38_17510 PF07702 UTRA domain LMD38_17520 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_17525 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_17530 PF01547 Bacterial extracellular solute-binding protein LMD38_17535 PF13556 PucR C-terminal helix-turn-helix domain LMD38_17540 PF00005 ABC transporter LMD38_17540 PF17912 MalK OB fold domain LMD38_17540 PF03459 TOBE domain LMD38_17555 PF07690 Major Facilitator Superfamily LMD38_17560 PF00293 NUDIX domain LMD38_17565 PF14158 YndJ-like protein LMD38_17580 PF00696 Amino acid kinase family LMD38_17580 PF13840 ACT domain LMD38_17590 PF01381 Helix-turn-helix LMD38_17595 PF03590 Aspartate-ammonia ligase LMD38_17605 PF00176 SNF2 family N-terminal domain LMD38_17605 PF00271 Helicase conserved C-terminal domain LMD38_17605 PF12419 SNF2 Helicase protein LMD38_17610 PF00963 Cohesin domain LMD38_17610 PF00395 S-layer homology domain LMD38_17620 PF08664 YcbB domain LMD38_17620 PF00072 Response regulator receiver domain LMD38_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_17630 PF00390 Malic enzyme, N-terminal domain LMD38_17630 PF03949 Malic enzyme, NAD binding domain LMD38_17635 PF10415 Fumarase C C-terminus LMD38_17635 PF00206 Lyase LMD38_17640 PF00375 Sodium:dicarboxylate symporter family LMD38_17645 PF00696 Amino acid kinase family LMD38_17650 PF13091 PLD-like domain LMD38_17670 PF00005 ABC transporter LMD38_17675 PF07730 Histidine kinase LMD38_17675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_17675 PF13185 GAF domain LMD38_17675 PF13492 GAF domain LMD38_17680 PF00072 Response regulator receiver domain LMD38_17680 PF00196 Bacterial regulatory proteins, luxR family LMD38_17705 PF04286 Protein of unknown function (DUF445) LMD38_17715 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_17735 PF00578 AhpC/TSA family LMD38_17755 PF03575 Peptidase family S51 LMD38_17760 PF01554 MatE LMD38_17775 PF00206 Lyase LMD38_17775 PF10415 Fumarase C C-terminus LMD38_17780 PF03553 Na+/H+ antiporter family LMD38_17785 PF00535 Glycosyl transferase family 2 LMD38_17800 PF02492 CobW/HypB/UreG, nucleotide-binding domain LMD38_17800 PF07683 Cobalamin synthesis protein cobW C-terminal domain LMD38_17805 PF00892 EamA-like transporter family LMD38_17810 PF00392 Bacterial regulatory proteins, gntR family LMD38_17810 PF07729 FCD domain LMD38_17820 PF16916 Dimerisation domain of Zinc Transporter LMD38_17820 PF01545 Cation efflux family LMD38_17840 PF13537 Glutamine amidotransferase domain LMD38_17840 PF00733 Asparagine synthase LMD38_17850 PF01047 MarR family LMD38_17860 PF00561 alpha/beta hydrolase fold LMD38_17870 PF00300 Histidine phosphatase superfamily (branch 1) LMD38_17875 PF13021 Domain of unknown function (DUF3885) LMD38_17900 PF10787 Uncharacterised protein from bacillus cereus group LMD38_17910 PF00753 Metallo-beta-lactamase superfamily LMD38_17910 PF12706 Beta-lactamase superfamily domain LMD38_17915 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_17925 PF08402 TOBE domain LMD38_17925 PF00005 ABC transporter LMD38_17930 PF03466 LysR substrate binding domain LMD38_17930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_17950 PF08141 Small acid-soluble spore protein H family LMD38_17955 PF04203 Sortase domain LMD38_17960 PF04203 Sortase domain LMD38_17975 PF03992 Antibiotic biosynthesis monooxygenase LMD38_17990 PF17329 Family of unknown function (DUF5367) LMD38_17995 PF00440 Bacterial regulatory proteins, tetR family LMD38_17995 PF17932 Tetracyclin repressor-like, C-terminal domain LMD38_18020 PF02272 DHHA1 domain LMD38_18020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LMD38_18020 PF01411 tRNA synthetases class II (A) LMD38_18025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LMD38_18025 PF00460 Flagella basal body rod protein LMD38_18030 PF00448 SRP54-type protein, GTPase domain LMD38_18035 PF00771 FHIPEP family LMD38_18040 PF01312 FlhB HrpN YscU SpaS Family LMD38_18050 PF01313 Bacterial export proteins, family 3 LMD38_18055 PF00813 FliP family LMD38_18065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LMD38_18065 PF04509 CheC-like family LMD38_18070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LMD38_18070 PF02154 Flagellar motor switch protein FliM LMD38_18080 PF01464 Transglycosylase SLT domain LMD38_18085 PF00669 Bacterial flagellin N-terminal helical region LMD38_18085 PF00700 Bacterial flagellin C-terminal helical region LMD38_18095 PF12181 DNA binding domain of the motility gene repressor (MogR) LMD38_18100 PF00072 Response regulator receiver domain LMD38_18100 PF01584 CheW-like domain LMD38_18115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LMD38_18115 PF00460 Flagella basal body rod protein LMD38_18115 PF07559 Flagellar basal body protein FlaE LMD38_18135 PF18269 T3SS EscN ATPase C-terminal domain LMD38_18135 PF02874 ATP synthase alpha/beta family, beta-barrel domain LMD38_18135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LMD38_18145 PF14842 FliG N-terminal domain LMD38_18145 PF01706 FliG C-terminal domain LMD38_18145 PF14841 FliG middle domain LMD38_18150 PF08345 Flagellar M-ring protein C-terminal LMD38_18150 PF01514 Secretory protein of YscJ/FliF family LMD38_18155 PF02049 Flagellar hook-basal body complex protein FliE LMD38_18160 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LMD38_18160 PF00460 Flagella basal body rod protein LMD38_18165 PF00460 Flagella basal body rod protein LMD38_18190 PF00460 Flagella basal body rod protein LMD38_18190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LMD38_18210 PF01739 CheR methyltransferase, SAM binding domain LMD38_18210 PF03705 CheR methyltransferase, all-alpha domain LMD38_18225 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LMD38_18225 PF04509 CheC-like family LMD38_18230 PF01584 CheW-like domain LMD38_18230 PF01627 Hpt domain LMD38_18230 PF07194 P2 response regulator binding domain LMD38_18230 PF02895 Signal transducing histidine kinase, homodimeric domain LMD38_18230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_18235 PF00072 Response regulator receiver domain LMD38_18240 PF13677 Membrane MotB of proton-channel complex MotA/MotB LMD38_18240 PF00691 OmpA family LMD38_18245 PF01618 MotA/TolQ/ExbB proton channel family LMD38_18255 PF17209 Hfq protein LMD38_18275 PF07690 Major Facilitator Superfamily LMD38_18305 PF00881 Nitroreductase family LMD38_18315 PF02698 DUF218 domain LMD38_18320 PF04239 Protein of unknown function (DUF421) LMD38_18330 PF06445 GyrI-like small molecule binding domain LMD38_18330 PF13411 MerR HTH family regulatory protein LMD38_18335 PF00753 Metallo-beta-lactamase superfamily LMD38_18335 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LMD38_18335 PF17770 Ribonuclease J C-terminal domain LMD38_18340 PF00999 Sodium/hydrogen exchanger family LMD38_18350 PF00202 Aminotransferase class-III LMD38_18355 PF00474 Sodium:solute symporter family LMD38_18360 PF04341 Protein of unknown function, DUF485 LMD38_18375 PF01810 LysE type translocator LMD38_18380 PF08892 YqcI/YcgG family LMD38_18385 PF00313 'Cold-shock' DNA-binding domain LMD38_18410 PF01263 Aldose 1-epimerase LMD38_18415 PF13456 Reverse transcriptase-like LMD38_18435 PF13673 Acetyltransferase (GNAT) domain LMD38_18435 PF18014 Acetyltransferase (GNAT) domain LMD38_18450 PF01367 5'-3' exonuclease, C-terminal SAM fold LMD38_18450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LMD38_18455 PF00689 Cation transporting ATPase, C-terminus LMD38_18455 PF00690 Cation transporter/ATPase, N-terminus LMD38_18480 PF00581 Rhodanese-like domain LMD38_18485 PF10752 Protein of unknown function (DUF2533) LMD38_18490 PF00583 Acetyltransferase (GNAT) family LMD38_18500 PF00350 Dynamin family LMD38_18505 PF04235 Protein of unknown function (DUF418) LMD38_18510 PF00860 Permease family LMD38_18515 PF00156 Phosphoribosyl transferase domain LMD38_18520 PF00557 Metallopeptidase family M24 LMD38_18530 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LMD38_18535 PF13307 Helicase C-terminal domain LMD38_18545 PF01170 Putative RNA methylase family UPF0020 LMD38_18545 PF02926 THUMP domain LMD38_18555 PF05103 DivIVA protein LMD38_18560 PF06908 YspA SLOG family LMD38_18595 PF10720 Protein of unknown function (DUF2515) LMD38_18600 PF03838 Recombination protein U LMD38_18605 PF00905 Penicillin binding protein transpeptidase domain LMD38_18605 PF00912 Transglycosylase LMD38_18615 PF10576 Iron-sulfur binding domain of endonuclease III LMD38_18615 PF00633 Helix-hairpin-helix motif LMD38_18615 PF00730 HhH-GPD superfamily base excision DNA repair protein LMD38_18620 PF07261 Replication initiation and membrane attachment LMD38_18625 PF00155 Aminotransferase class I and II LMD38_18635 PF14084 Protein of unknown function (DUF4264) LMD38_18640 PF00929 Exonuclease LMD38_18640 PF04851 Type III restriction enzyme, res subunit LMD38_18640 PF13307 Helicase C-terminal domain LMD38_18645 PF02261 Aspartate decarboxylase LMD38_18650 PF02569 Pantoate-beta-alanine ligase LMD38_18655 PF02548 Ketopantoate hydroxymethyltransferase LMD38_18665 PF02237 Biotin protein ligase C terminal domain LMD38_18665 PF03099 Biotin/lipoate A/B protein ligase family LMD38_18665 PF08279 HTH domain LMD38_18670 PF01743 Poly A polymerase head domain LMD38_18670 PF12627 Probable RNA and SrmB- binding site of polymerase A LMD38_18670 PF13735 tRNA nucleotidyltransferase domain 2 putative LMD38_18675 PF00534 Glycosyl transferases group 1 LMD38_18675 PF13439 Glycosyltransferase Family 4 LMD38_18680 PF02585 GlcNAc-PI de-N-acetylase LMD38_18685 PF02142 MGS-like domain LMD38_18690 PF05173 Dihydrodipicolinate reductase, C-terminus LMD38_18690 PF01113 Dihydrodipicolinate reductase, N-terminus LMD38_18695 PF03819 MazG nucleotide pyrophosphohydrolase domain LMD38_18700 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_18700 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_18710 PF04298 Putative neutral zinc metallopeptidase LMD38_18715 PF09577 Sporulation protein YpjB (SpoYpjB) LMD38_18725 PF07187 Protein of unknown function (DUF1405) LMD38_18730 PF00032 Cytochrome b(C-terminal)/b6/petD LMD38_18730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LMD38_18735 PF00033 Cytochrome b/b6/petB LMD38_18740 PF00355 Rieske [2Fe-2S] domain LMD38_18745 PF10673 Protein of unknown function (DUF2487) LMD38_18750 PF08858 IDEAL domain LMD38_18750 PF08864 UPF0302 domain LMD38_18760 PF00155 Aminotransferase class I and II LMD38_18765 PF01761 3-dehydroquinate synthase LMD38_18770 PF01264 Chorismate synthase LMD38_18775 PF00334 Nucleoside diphosphate kinase LMD38_18780 PF00348 Polyprenyl synthetase LMD38_18785 PF01209 ubiE/COQ5 methyltransferase family LMD38_18790 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 LMD38_18795 PF01227 GTP cyclohydrolase I LMD38_18800 PF00216 Bacterial DNA-binding protein LMD38_18805 PF09547 Stage IV sporulation protein A (spore_IV_A) LMD38_18815 PF10966 Protein of unknown function (DUF2768) LMD38_18825 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LMD38_18825 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LMD38_18830 PF01926 50S ribosome-binding GTPase LMD38_18830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LMD38_18840 PF14045 YIEGIA protein LMD38_18850 PF14140 YpzI-like protein LMD38_18855 PF01070 FMN-dependent dehydrogenase LMD38_18860 PF00575 S1 RNA binding domain LMD38_18865 PF02224 Cytidylate kinase LMD38_18875 PF00710 Asparaginase, N-terminal LMD38_18875 PF17763 Glutaminase/Asparaginase C-terminal domain LMD38_18900 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LMD38_18900 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LMD38_18905 PF05389 Negative regulator of genetic competence (MecA) LMD38_18910 PF02310 B12 binding domain LMD38_18910 PF02607 B12 binding domain LMD38_18910 PF13411 MerR HTH family regulatory protein LMD38_18915 PF00149 Calcineurin-like phosphoesterase LMD38_18925 PF02517 CPBP intramembrane metalloprotease LMD38_18930 PF00271 Helicase conserved C-terminal domain LMD38_18930 PF00270 DEAD/DEAH box helicase LMD38_18945 PF12822 ECF transporter, substrate-specific component LMD38_18955 PF01551 Peptidase family M23 LMD38_18960 PF01923 Cobalamin adenosyltransferase LMD38_18965 PF00672 HAMP domain LMD38_18965 PF18698 Histidine kinase sensor domain LMD38_18965 PF00989 PAS fold LMD38_18965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_18965 PF00512 His Kinase A (phospho-acceptor) domain LMD38_18970 PF00072 Response regulator receiver domain LMD38_18970 PF00486 Transcriptional regulatory protein, C terminal LMD38_18975 PF01578 Cytochrome C assembly protein LMD38_18980 PF05140 ResB-like family LMD38_18985 PF00578 AhpC/TSA family LMD38_18990 PF00849 RNA pseudouridylate synthase LMD38_18990 PF01479 S4 domain LMD38_18995 PF07670 Nucleoside recognition LMD38_19000 PF07670 Nucleoside recognition LMD38_19005 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_19005 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_19010 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LMD38_19010 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LMD38_19025 PF03706 Lysylphosphatidylglycerol synthase TM region LMD38_19025 PF09924 Uncharacterised conserved protein (DUF2156) LMD38_19040 PF01048 Phosphorylase superfamily LMD38_19045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_19045 PF00989 PAS fold LMD38_19045 PF16736 Single Cache-like LMD38_19045 PF00512 His Kinase A (phospho-acceptor) domain LMD38_19050 PF00589 Phage integrase family LMD38_19060 PF01904 Protein of unknown function DUF72 LMD38_19065 PF00512 His Kinase A (phospho-acceptor) domain LMD38_19065 PF00989 PAS fold LMD38_19065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_19080 PF00912 Transglycosylase LMD38_19080 PF00905 Penicillin binding protein transpeptidase domain LMD38_19085 PF01865 Protein of unknown function DUF47 LMD38_19090 PF01384 Phosphate transporter family LMD38_19095 PF01925 Sulfite exporter TauE/SafE LMD38_19110 PF00970 Oxidoreductase FAD-binding domain LMD38_19110 PF00042 Globin LMD38_19110 PF00175 Oxidoreductase NAD-binding domain LMD38_19130 PF08241 Methyltransferase domain LMD38_19140 PF05525 Branched-chain amino acid transport protein LMD38_19150 PF00072 Response regulator receiver domain LMD38_19150 PF00196 Bacterial regulatory proteins, luxR family LMD38_19155 PF07730 Histidine kinase LMD38_19155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_19155 PF00672 HAMP domain LMD38_19160 PF09922 Cell wall-active antibiotics response 4TMS YvqF LMD38_19175 PF03553 Na+/H+ antiporter family LMD38_19185 PF00375 Sodium:dicarboxylate symporter family LMD38_19200 PF00209 Sodium:neurotransmitter symporter family LMD38_19210 PF01903 CbiX LMD38_19215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LMD38_19225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LMD38_19225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LMD38_19235 PF14306 PUA-like domain LMD38_19235 PF01747 ATP-sulfurylase LMD38_19240 PF01507 Phosphoadenosine phosphosulfate reductase family LMD38_19250 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LMD38_19250 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LMD38_19260 PF00884 Sulfatase LMD38_19265 PF01066 CDP-alcohol phosphatidyltransferase LMD38_19270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LMD38_19270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LMD38_19280 PF02811 PHP domain LMD38_19285 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LMD38_19290 PF01502 Phosphoribosyl-AMP cyclohydrolase LMD38_19295 PF00977 Histidine biosynthesis protein LMD38_19300 PF00977 Histidine biosynthesis protein LMD38_19305 PF00117 Glutamine amidotransferase class-I LMD38_19310 PF00475 Imidazoleglycerol-phosphate dehydratase LMD38_19315 PF00815 Histidinol dehydrogenase LMD38_19320 PF01634 ATP phosphoribosyltransferase LMD38_19325 PF13393 Histidyl-tRNA synthetase LMD38_19330 PF00694 Aconitase C-terminal domain LMD38_19335 PF00330 Aconitase family (aconitate hydratase) LMD38_19340 PF00180 Isocitrate/isopropylmalate dehydrogenase LMD38_19345 PF00682 HMGL-like LMD38_19345 PF08502 LeuA allosteric (dimerisation) domain LMD38_19350 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LMD38_19350 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LMD38_19355 PF01842 ACT domain LMD38_19355 PF10369 Small subunit of acetolactate synthase LMD38_19360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LMD38_19360 PF00205 Thiamine pyrophosphate enzyme, central domain LMD38_19360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LMD38_19365 PF01063 Amino-transferase class IV LMD38_19375 PF03698 Uncharacterised protein family (UPF0180) LMD38_19385 PF09579 Sporulation protein YtfJ (Spore_YtfJ) LMD38_19395 PF02386 Cation transport protein LMD38_19400 PF00375 Sodium:dicarboxylate symporter family LMD38_19410 PF01047 MarR family LMD38_19425 PF02673 Bacitracin resistance protein BacA LMD38_19430 PF01554 MatE LMD38_19450 PF01636 Phosphotransferase enzyme family LMD38_19465 PF00258 Flavodoxin LMD38_19475 PF07687 Peptidase dimerisation domain LMD38_19475 PF01546 Peptidase family M20/M25/M40 LMD38_19485 PF00501 AMP-binding enzyme LMD38_19485 PF13193 AMP-binding enzyme C-terminal domain LMD38_19490 PF03062 MBOAT, membrane-bound O-acyltransferase family LMD38_19495 PF00550 Phosphopantetheine attachment site LMD38_19500 PF04914 DltD protein LMD38_19505 PF03060 Nitronate monooxygenase LMD38_19510 PF02016 LD-carboxypeptidase N-terminal domain LMD38_19510 PF17676 LD-carboxypeptidase C-terminal domain LMD38_19525 PF01037 Lrp/AsnC ligand binding domain LMD38_19545 PF00005 ABC transporter LMD38_19555 PF00005 ABC transporter LMD38_19560 PF00392 Bacterial regulatory proteins, gntR family LMD38_19600 PF07972 NrdI Flavodoxin like LMD38_19630 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) LMD38_19635 PF14489 QueF-like protein LMD38_19640 PF04055 Radical SAM superfamily LMD38_19645 PF01242 6-pyruvoyl tetrahydropterin synthase LMD38_19650 PF06508 Queuosine biosynthesis protein QueC LMD38_19655 PF00989 PAS fold LMD38_19655 PF00512 His Kinase A (phospho-acceptor) domain LMD38_19655 PF13426 PAS domain LMD38_19655 PF13188 PAS domain LMD38_19655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_19665 PF12867 DinB superfamily LMD38_19675 PF01047 MarR family LMD38_19680 PF00512 His Kinase A (phospho-acceptor) domain LMD38_19680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_19680 PF02743 Cache domain LMD38_19685 PF09388 Spo0E like sporulation regulatory protein LMD38_19690 PF04748 Divergent polysaccharide deacetylase LMD38_19700 PF00596 Class II Aldolase and Adducin N-terminal domain LMD38_19705 PF00395 S-layer homology domain LMD38_19705 PF01520 N-acetylmuramoyl-L-alanine amidase LMD38_19710 PF08220 DeoR-like helix-turn-helix domain LMD38_19710 PF00455 DeoR C terminal sensor domain LMD38_19720 PF00266 Aminotransferase class-V LMD38_19725 PF13419 Haloacid dehalogenase-like hydrolase LMD38_19730 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_19735 PF08402 TOBE domain LMD38_19735 PF00005 ABC transporter LMD38_19755 PF02386 Cation transport protein LMD38_19765 PF00561 alpha/beta hydrolase fold LMD38_19790 PF01575 MaoC like domain LMD38_19795 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_19800 PF02386 Cation transport protein LMD38_19805 PF03741 Integral membrane protein TerC family LMD38_19810 PF01226 Formate/nitrite transporter LMD38_19820 PF06750 Bacterial Peptidase A24 N-terminal domain LMD38_19820 PF01478 Type IV leader peptidase family LMD38_19825 PF02589 LUD domain LMD38_19830 PF02589 LUD domain LMD38_19830 PF13183 4Fe-4S dicluster domain LMD38_19830 PF11870 Domain of unknown function (DUF3390) LMD38_19835 PF02754 Cysteine-rich domain LMD38_19840 PF07729 FCD domain LMD38_19840 PF00392 Bacterial regulatory proteins, gntR family LMD38_19845 PF00989 PAS fold LMD38_19845 PF00512 His Kinase A (phospho-acceptor) domain LMD38_19845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_19845 PF00672 HAMP domain LMD38_19845 PF18698 Histidine kinase sensor domain LMD38_19850 PF00072 Response regulator receiver domain LMD38_19850 PF00486 Transcriptional regulatory protein, C terminal LMD38_19860 PF13556 PucR C-terminal helix-turn-helix domain LMD38_19860 PF17853 GGDEF-like domain LMD38_19860 PF05651 Putative sugar diacid recognition LMD38_19865 PF01565 FAD binding domain LMD38_19865 PF02913 FAD linked oxidases, C-terminal domain LMD38_19870 PF13183 4Fe-4S dicluster domain LMD38_19870 PF02754 Cysteine-rich domain LMD38_19875 PF00188 Cysteine-rich secretory protein family LMD38_19885 PF01479 S4 domain LMD38_19885 PF00849 RNA pseudouridylate synthase LMD38_19895 PF03176 MMPL family LMD38_19905 PF13416 Bacterial extracellular solute-binding protein LMD38_19910 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_19915 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_19920 PF08402 TOBE domain LMD38_19920 PF00005 ABC transporter LMD38_19925 PF00171 Aldehyde dehydrogenase family LMD38_19935 PF01609 Transposase DDE domain LMD38_19950 PF08671 Anti-repressor SinI LMD38_19950 PF01381 Helix-turn-helix LMD38_19955 PF12389 Camelysin metallo-endopeptidase LMD38_19965 PF12389 Camelysin metallo-endopeptidase LMD38_19975 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_19975 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_19995 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_19995 PF00589 Phage integrase family LMD38_20105 PF01381 Helix-turn-helix LMD38_20110 PF02779 Transketolase, pyrimidine binding domain LMD38_20110 PF00676 Dehydrogenase E1 component LMD38_20110 PF16870 2-oxoglutarate dehydrogenase C-terminal LMD38_20115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LMD38_20115 PF00364 Biotin-requiring enzyme LMD38_20115 PF02817 e3 binding domain LMD38_20135 PF01209 ubiE/COQ5 methyltransferase family LMD38_20150 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_20150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LMD38_20170 PF10042 Uncharacterized conserved protein (DUF2278) LMD38_20180 PF02652 L-lactate permease LMD38_20190 PF00290 Tryptophan synthase alpha chain LMD38_20195 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_20200 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LMD38_20205 PF00218 Indole-3-glycerol phosphate synthase LMD38_20210 PF00591 Glycosyl transferase family, a/b domain LMD38_20210 PF02885 Glycosyl transferase family, helical bundle domain LMD38_20215 PF00591 Glycosyl transferase family, a/b domain LMD38_20215 PF02885 Glycosyl transferase family, helical bundle domain LMD38_20215 PF00117 Glutamine amidotransferase class-I LMD38_20220 PF00425 chorismate binding enzyme LMD38_20220 PF04715 Anthranilate synthase component I, N terminal region LMD38_20225 PF00474 Sodium:solute symporter family LMD38_20230 PF02368 Bacterial Ig-like domain (group 2) LMD38_20245 PF00756 Putative esterase LMD38_20255 PF13673 Acetyltransferase (GNAT) domain LMD38_20260 PF13361 UvrD-like helicase C-terminal domain LMD38_20260 PF00580 UvrD/REP helicase N-terminal domain LMD38_20285 PF07098 Protein of unknown function (DUF1360) LMD38_20305 PF04321 RmlD substrate binding domain LMD38_20310 PF16363 GDP-mannose 4,6 dehydratase LMD38_20315 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LMD38_20320 PF00483 Nucleotidyl transferase LMD38_20340 PF00535 Glycosyl transferase family 2 LMD38_20340 PF13181 Tetratricopeptide repeat LMD38_20350 PF05711 Macrocin-O-methyltransferase (TylF) LMD38_20355 PF08241 Methyltransferase domain LMD38_20360 PF00535 Glycosyl transferase family 2 LMD38_20365 PF01098 Cell cycle protein LMD38_20370 PF00149 Calcineurin-like phosphoesterase LMD38_20380 PF00849 RNA pseudouridylate synthase LMD38_20385 PF01513 ATP-NAD kinase LMD38_20390 PF04607 Region found in RelA / SpoT proteins LMD38_20400 PF01928 CYTH domain LMD38_20405 PF01152 Bacterial-like globin LMD38_20420 PF01432 Peptidase family M3 LMD38_20420 PF08439 Oligopeptidase F LMD38_20430 PF13396 Phospholipase_D-nuclease N-terminal LMD38_20430 PF13091 PLD-like domain LMD38_20435 PF05389 Negative regulator of genetic competence (MecA) LMD38_20440 PF03741 Integral membrane protein TerC family LMD38_20445 PF03960 ArsC family LMD38_20455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_20460 PF01554 MatE LMD38_20480 PF00005 ABC transporter LMD38_20480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_20485 PF00005 ABC transporter LMD38_20485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_20490 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_20490 PF12911 N-terminal TM domain of oligopeptide transport permease C LMD38_20495 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_20500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_20510 PF00579 tRNA synthetases class I (W and Y) LMD38_20515 PF12227 Protein of unknown function (DUF3603) LMD38_20520 PF10026 Predicted Zn-dependent protease (DUF2268) LMD38_20525 PF02801 Beta-ketoacyl synthase, C-terminal domain LMD38_20525 PF00109 Beta-ketoacyl synthase, N-terminal domain LMD38_20530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LMD38_20530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LMD38_20535 PF10815 ComZ LMD38_20560 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_20560 PF07724 AAA domain (Cdc48 subfamily) LMD38_20560 PF17871 AAA lid domain LMD38_20560 PF02861 Clp amino terminal domain, pathogenicity island component LMD38_20560 PF10431 C-terminal, D2-small domain, of ClpB protein LMD38_20565 PF14168 YjzC-like protein LMD38_20580 PF12758 Protein of unknown function (DUF3813) LMD38_20585 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_20585 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_20595 PF00639 PPIC-type PPIASE domain LMD38_20600 PF13509 S1 domain LMD38_20600 PF17783 CvfB-like winged helix domain LMD38_20605 PF04461 Protein of unknown function (DUF520) LMD38_20615 PF00128 Alpha amylase, catalytic domain LMD38_20620 PF00909 Ammonium Transporter Family LMD38_20625 PF06803 Protein of unknown function (DUF1232) LMD38_20645 PF00690 Cation transporter/ATPase, N-terminus LMD38_20645 PF00689 Cation transporting ATPase, C-terminus LMD38_20660 PF00199 Catalase LMD38_20660 PF06628 Catalase-related immune-responsive LMD38_20665 PF00762 Ferrochelatase LMD38_20670 PF13537 Glutamine amidotransferase domain LMD38_20670 PF00733 Asparagine synthase LMD38_20680 PF07457 Protein of unknown function (DUF1516) LMD38_20685 PF00202 Aminotransferase class-III LMD38_20695 PF01557 Fumarylacetoacetate (FAA) hydrolase family LMD38_20700 PF09388 Spo0E like sporulation regulatory protein LMD38_20705 PF10676 Spore germination protein gerPA/gerPF LMD38_20710 PF10803 Spore germination GerPB LMD38_20715 PF10737 Spore germination protein GerPC LMD38_20725 PF10970 Spore germination protein GerPE LMD38_20730 PF10676 Spore germination protein gerPA/gerPF LMD38_20740 PF00580 UvrD/REP helicase N-terminal domain LMD38_20740 PF12705 PD-(D/E)XK nuclease superfamily LMD38_20740 PF13361 UvrD-like helicase C-terminal domain LMD38_20745 PF12705 PD-(D/E)XK nuclease superfamily LMD38_20745 PF13361 UvrD-like helicase C-terminal domain LMD38_20750 PF10502 Signal peptidase, peptidase S26 LMD38_20755 PF09335 SNARE associated Golgi protein LMD38_20765 PF06338 ComK protein LMD38_20780 PF00313 'Cold-shock' DNA-binding domain LMD38_20790 PF00463 Isocitrate lyase family LMD38_20795 PF01274 Malate synthase LMD38_20810 PF00892 EamA-like transporter family LMD38_20815 PF16491 CAAX prenyl protease N-terminal, five membrane helices LMD38_20815 PF01435 Peptidase family M48 LMD38_20840 PF00486 Transcriptional regulatory protein, C terminal LMD38_20840 PF00072 Response regulator receiver domain LMD38_20845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_20845 PF00512 His Kinase A (phospho-acceptor) domain LMD38_20850 PF06445 GyrI-like small molecule binding domain LMD38_20850 PF12833 Helix-turn-helix domain LMD38_20855 PF08281 Sigma-70, region 4 LMD38_20855 PF04542 Sigma-70 region 2 LMD38_20865 PF01966 HD domain LMD38_20870 PF00149 Calcineurin-like phosphoesterase LMD38_20875 PF12146 Serine aminopeptidase, S33 LMD38_20935 PF05593 RHS Repeat LMD38_20960 PF05593 RHS Repeat LMD38_20965 PF00005 ABC transporter LMD38_20965 PF17850 CysA C-terminal regulatory domain LMD38_20965 PF12857 TOBE-like domain LMD38_20970 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_20975 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_20985 PF01520 N-acetylmuramoyl-L-alanine amidase LMD38_20985 PF00395 S-layer homology domain LMD38_20995 PF13193 AMP-binding enzyme C-terminal domain LMD38_20995 PF00501 AMP-binding enzyme LMD38_21005 PF10437 Bacterial lipoate protein ligase C-terminus LMD38_21005 PF03099 Biotin/lipoate A/B protein ligase family LMD38_21010 PF12706 Beta-lactamase superfamily domain LMD38_21015 PF14149 YhfH-like protein LMD38_21020 PF00356 Bacterial regulatory proteins, lacI family LMD38_21025 PF13280 WYL domain LMD38_21025 PF08279 HTH domain LMD38_21065 PF17932 Tetracyclin repressor-like, C-terminal domain LMD38_21065 PF00440 Bacterial regulatory proteins, tetR family LMD38_21075 PF03965 Penicillinase repressor LMD38_21105 PF01593 Flavin containing amine oxidoreductase LMD38_21110 PF00762 Ferrochelatase LMD38_21115 PF01208 Uroporphyrinogen decarboxylase (URO-D) LMD38_21120 PF00912 Transglycosylase LMD38_21120 PF00905 Penicillin binding protein transpeptidase domain LMD38_21125 PF03992 Antibiotic biosynthesis monooxygenase LMD38_21130 PF03703 Bacterial PH domain LMD38_21135 PF03703 Bacterial PH domain LMD38_21165 PF03703 Bacterial PH domain LMD38_21170 PF03703 Bacterial PH domain LMD38_21180 PF17934 Tetracyclin repressor-like, C-terminal domain LMD38_21180 PF00440 Bacterial regulatory proteins, tetR family LMD38_21190 PF12787 EcsC protein family LMD38_21195 PF05975 Bacterial ABC transporter protein EcsB LMD38_21200 PF00005 ABC transporter LMD38_21205 PF01230 HIT domain LMD38_21210 PF12732 YtxH-like protein LMD38_21215 PF01047 MarR family LMD38_21235 PF13538 UvrD-like helicase C-terminal domain LMD38_21250 PF01098 Cell cycle protein LMD38_21260 PF04542 Sigma-70 region 2 LMD38_21260 PF08281 Sigma-70, region 4 LMD38_21275 PF01266 FAD dependent oxidoreductase LMD38_21275 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LMD38_21280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LMD38_21280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LMD38_21285 PF00230 Major intrinsic protein LMD38_21290 PF04309 Glycerol-3-phosphate responsive antiterminator LMD38_21300 PF08386 TAP-like protein LMD38_21300 PF00561 alpha/beta hydrolase fold LMD38_21310 PF18801 response regulator aspartate phosphatase H, N terminal LMD38_21320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_21325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_21335 PF01966 HD domain LMD38_21335 PF01336 OB-fold nucleic acid binding domain LMD38_21340 PF13514 AAA domain LMD38_21345 PF00149 Calcineurin-like phosphoesterase LMD38_21360 PF11121 Protein of unknown function (DUF2639) LMD38_21375 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_21375 PF00107 Zinc-binding dehydrogenase LMD38_21390 PF01906 Putative heavy-metal-binding LMD38_21415 PF00072 Response regulator receiver domain LMD38_21415 PF00672 HAMP domain LMD38_21415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_21415 PF00512 His Kinase A (phospho-acceptor) domain LMD38_21415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LMD38_21415 PF01627 Hpt domain LMD38_21420 PF03705 CheR methyltransferase, all-alpha domain LMD38_21420 PF01739 CheR methyltransferase, SAM binding domain LMD38_21425 PF07228 Stage II sporulation protein E (SpoIIE) LMD38_21425 PF13426 PAS domain LMD38_21460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_21460 PF00005 ABC transporter LMD38_21465 PF00005 ABC transporter LMD38_21465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_21470 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_21470 PF12911 N-terminal TM domain of oligopeptide transport permease C LMD38_21475 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_21480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_21495 PF02423 Ornithine cyclodeaminase/mu-crystallin family LMD38_21500 PF05544 Proline racemase LMD38_21505 PF11121 Protein of unknown function (DUF2639) LMD38_21510 PF01522 Polysaccharide deacetylase LMD38_21515 PF01695 IstB-like ATP binding protein LMD38_21520 PF02796 Helix-turn-helix domain of resolvase LMD38_21520 PF00665 Integrase core domain LMD38_21525 PF12833 Helix-turn-helix domain LMD38_21525 PF06445 GyrI-like small molecule binding domain LMD38_21530 PF11208 Protein of unknown function (DUF2992) LMD38_21540 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_21540 PF00589 Phage integrase family LMD38_21545 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_21545 PF00589 Phage integrase family LMD38_21555 PF00395 S-layer homology domain LMD38_21555 PF01520 N-acetylmuramoyl-L-alanine amidase LMD38_21560 PF05343 M42 glutamyl aminopeptidase LMD38_21580 PF00378 Enoyl-CoA hydratase/isomerase LMD38_21590 PF00395 S-layer homology domain LMD38_21595 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain LMD38_21595 PF17890 Peptidoglycan hydrolase LytB WW-like domain LMD38_21595 PF01473 Putative cell wall binding repeat LMD38_21595 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LMD38_21610 PF01943 Polysaccharide biosynthesis protein LMD38_21610 PF14667 Polysaccharide biosynthesis C-terminal domain LMD38_21615 PF07516 SecA Wing and Scaffold domain LMD38_21615 PF01043 SecA preprotein cross-linking domain LMD38_21615 PF07517 SecA DEAD-like domain LMD38_21630 PF00916 Sulfate permease family LMD38_21630 PF01740 STAS domain LMD38_21640 PF05738 Cna protein B-type domain LMD38_21640 PF17802 Prealbumin-like fold domain LMD38_21640 PF05737 Collagen binding domain LMD38_21645 PF00501 AMP-binding enzyme LMD38_21645 PF13193 AMP-binding enzyme C-terminal domain LMD38_21650 PF04055 Radical SAM superfamily LMD38_21660 PF02245 Methylpurine-DNA glycosylase (MPG) LMD38_21665 PF03306 Alpha-acetolactate decarboxylase LMD38_21670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LMD38_21670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LMD38_21670 PF00205 Thiamine pyrophosphate enzyme, central domain LMD38_21685 PF06133 Control of competence regulator ComK, YlbF/YmcA LMD38_21690 PF04286 Protein of unknown function (DUF445) LMD38_21700 PF14398 YheC/D like ATP-grasp LMD38_21710 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_21715 PF00005 ABC transporter LMD38_21720 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_21725 PF00497 Bacterial extracellular solute-binding proteins, family 3 LMD38_21730 PF00005 ABC transporter LMD38_21730 PF00664 ABC transporter transmembrane region LMD38_21735 PF00005 ABC transporter LMD38_21735 PF00664 ABC transporter transmembrane region LMD38_21740 PF00171 Aldehyde dehydrogenase family LMD38_21745 PF01177 Asp/Glu/Hydantoin racemase LMD38_21750 PF13520 Amino acid permease LMD38_21760 PF01965 DJ-1/PfpI family LMD38_21770 PF07690 Major Facilitator Superfamily LMD38_21775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_21775 PF12793 Sugar transport-related sRNA regulator N-term LMD38_21780 PF02525 Flavodoxin-like fold LMD38_21790 PF01638 HxlR-like helix-turn-helix LMD38_21795 PF07690 Major Facilitator Superfamily LMD38_21800 PF17934 Tetracyclin repressor-like, C-terminal domain LMD38_21800 PF00440 Bacterial regulatory proteins, tetR family LMD38_21805 PF00893 Small Multidrug Resistance protein LMD38_21810 PF00893 Small Multidrug Resistance protein LMD38_21825 PF01037 Lrp/AsnC ligand binding domain LMD38_21830 PF00892 EamA-like transporter family LMD38_21845 PF07681 DoxX LMD38_21855 PF00367 phosphotransferase system, EIIB LMD38_21855 PF02378 Phosphotransferase system, EIIC LMD38_21860 PF01380 SIS domain LMD38_21865 PF01418 Helix-turn-helix domain, rpiR family LMD38_21865 PF01380 SIS domain LMD38_21875 PF00999 Sodium/hydrogen exchanger family LMD38_21880 PF13520 Amino acid permease LMD38_21915 PF09335 SNARE associated Golgi protein LMD38_21925 PF02735 Ku70/Ku80 beta-barrel domain LMD38_21940 PF11007 Spore coat associated protein JA (CotJA) LMD38_21945 PF12652 CotJB protein LMD38_21950 PF05067 Manganese containing catalase LMD38_21955 PF05525 Branched-chain amino acid transport protein LMD38_21970 PF09529 Integral membrane protein (intg_mem_TP0381) LMD38_21980 PF00005 ABC transporter LMD38_21985 PF12704 MacB-like periplasmic core domain LMD38_21985 PF02687 FtsX-like permease family LMD38_21990 PF01476 LysM domain LMD38_21990 PF06725 3D domain LMD38_22005 PF02378 Phosphotransferase system, EIIC LMD38_22010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LMD38_22015 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LMD38_22020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LMD38_22020 PF00874 PRD domain LMD38_22020 PF08279 HTH domain LMD38_22020 PF05043 Mga helix-turn-helix domain LMD38_22030 PF07690 Major Facilitator Superfamily LMD38_22035 PF02690 Na+/Pi-cotransporter LMD38_22040 PF00107 Zinc-binding dehydrogenase LMD38_22040 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_22045 PF03816 Cell envelope-related transcriptional attenuator domain LMD38_22055 PF01925 Sulfite exporter TauE/SafE LMD38_22060 PF13686 DsrE/DsrF/DrsH-like family LMD38_22065 PF00581 Rhodanese-like domain LMD38_22065 PF01206 Sulfurtransferase TusA LMD38_22070 PF00581 Rhodanese-like domain LMD38_22075 PF01206 Sulfurtransferase TusA LMD38_22080 PF00753 Metallo-beta-lactamase superfamily LMD38_22080 PF00581 Rhodanese-like domain LMD38_22085 PF01206 Sulfurtransferase TusA LMD38_22085 PF00581 Rhodanese-like domain LMD38_22090 PF02583 Metal-sensitive transcriptional repressor LMD38_22115 PF00089 Trypsin LMD38_22130 PF04293 SpoVR like protein LMD38_22135 PF00881 Nitroreductase family LMD38_22155 PF03845 Spore germination protein LMD38_22165 PF14148 YhdB-like protein LMD38_22170 PF02600 Disulfide bond formation protein DsbB LMD38_22175 PF00085 Thioredoxin LMD38_22190 PF17969 L,D-transpeptidase C-terminal domain LMD38_22190 PF03734 L,D-transpeptidase catalytic domain LMD38_22200 PF00860 Permease family LMD38_22215 PF01047 MarR family LMD38_22220 PF07690 Major Facilitator Superfamily LMD38_22225 PF02702 Osmosensitive K+ channel His kinase sensor domain LMD38_22230 PF02669 K+-transporting ATPase, c chain LMD38_22240 PF03814 Potassium-transporting ATPase A subunit LMD38_22265 PF08543 Phosphomethylpyrimidine kinase LMD38_22270 PF00899 ThiF family LMD38_22275 PF05690 Thiazole biosynthesis protein ThiG LMD38_22280 PF02597 ThiS family LMD38_22285 PF01266 FAD dependent oxidoreductase LMD38_22290 PF02581 Thiamine monophosphate synthase LMD38_22295 PF09084 NMT1/THI5 like LMD38_22300 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_22305 PF00005 ABC transporter LMD38_22310 PF03070 TENA/THI-4/PQQC family LMD38_22315 PF00246 Zinc carboxypeptidase LMD38_22315 PF08239 Bacterial SH3 domain LMD38_22330 PF00571 CBS domain LMD38_22450 PF00873 AcrB/AcrD/AcrF family LMD38_22465 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_22470 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_22475 PF12849 PBP superfamily domain LMD38_22480 PF04023 FeoA domain LMD38_22480 PF07664 Ferrous iron transport protein B C terminus LMD38_22480 PF17910 FeoB cytosolic helical domain LMD38_22480 PF02421 Ferrous iron transport protein B LMD38_22480 PF07670 Nucleoside recognition LMD38_22485 PF07664 Ferrous iron transport protein B C terminus LMD38_22485 PF17910 FeoB cytosolic helical domain LMD38_22485 PF07670 Nucleoside recognition LMD38_22485 PF02421 Ferrous iron transport protein B LMD38_22490 PF07664 Ferrous iron transport protein B C terminus LMD38_22490 PF17910 FeoB cytosolic helical domain LMD38_22490 PF02421 Ferrous iron transport protein B LMD38_22490 PF07670 Nucleoside recognition LMD38_22500 PF05504 Spore germination B3/ GerAC like, C-terminal LMD38_22505 PF03845 Spore germination protein LMD38_22510 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_22515 PF00474 Sodium:solute symporter family LMD38_22520 PF11755 Protein of unknown function (DUF3311) LMD38_22525 PF01546 Peptidase family M20/M25/M40 LMD38_22525 PF07687 Peptidase dimerisation domain LMD38_22530 PF13529 Peptidase_C39 like family LMD38_22535 PF00324 Amino acid permease LMD38_22540 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LMD38_22545 PF00115 Cytochrome C and Quinol oxidase polypeptide I LMD38_22550 PF00510 Cytochrome c oxidase subunit III LMD38_22560 PF02254 TrkA-N domain LMD38_22560 PF02080 TrkA-C domain LMD38_22560 PF00999 Sodium/hydrogen exchanger family LMD38_22570 PF13673 Acetyltransferase (GNAT) domain LMD38_22585 PF00860 Permease family LMD38_22590 PF00324 Amino acid permease LMD38_22605 PF05525 Branched-chain amino acid transport protein LMD38_22610 PF00854 POT family LMD38_22620 PF04203 Sortase domain LMD38_22630 PF01381 Helix-turn-helix LMD38_22635 PF06725 3D domain LMD38_22635 PF01476 LysM domain LMD38_22640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_22640 PF00672 HAMP domain LMD38_22640 PF02743 Cache domain LMD38_22645 PF02673 Bacitracin resistance protein BacA LMD38_22670 PF03372 Endonuclease/Exonuclease/phosphatase family LMD38_22675 PF00882 Zinc dependent phospholipase C LMD38_22685 PF00107 Zinc-binding dehydrogenase LMD38_22685 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_22700 PF05547 Immune inhibitor A peptidase M6 LMD38_22705 PF00923 Transaldolase/Fructose-6-phosphate aldolase LMD38_22710 PF13407 Periplasmic binding protein domain LMD38_22715 PF02653 Branched-chain amino acid transport system / permease component LMD38_22725 PF01609 Transposase DDE domain LMD38_22735 PF05025 RbsD / FucU transport protein family LMD38_22740 PF00294 pfkB family carbohydrate kinase LMD38_22745 PF00356 Bacterial regulatory proteins, lacI family LMD38_22750 PF07690 Major Facilitator Superfamily LMD38_22755 PF01047 MarR family LMD38_22760 PF07690 Major Facilitator Superfamily LMD38_22765 PF00005 ABC transporter LMD38_22765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_22770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_22770 PF00005 ABC transporter LMD38_22775 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_22780 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_22785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_22795 PF00582 Universal stress protein family LMD38_22800 PF01740 STAS domain LMD38_22800 PF00916 Sulfate permease family LMD38_22810 PF00072 Response regulator receiver domain LMD38_22810 PF00486 Transcriptional regulatory protein, C terminal LMD38_22815 PF18698 Histidine kinase sensor domain LMD38_22815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_22815 PF00672 HAMP domain LMD38_22815 PF00989 PAS fold LMD38_22815 PF00512 His Kinase A (phospho-acceptor) domain LMD38_22820 PF01872 RibD C-terminal domain LMD38_22825 PF13280 WYL domain LMD38_22825 PF08279 HTH domain LMD38_22850 PF00324 Amino acid permease LMD38_22855 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_22860 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_22865 PF00497 Bacterial extracellular solute-binding proteins, family 3 LMD38_22870 PF00005 ABC transporter LMD38_22875 PF01235 Sodium:alanine symporter family LMD38_22880 PF01636 Phosphotransferase enzyme family LMD38_22890 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_22905 PF16657 Maltogenic Amylase, C-terminal domain LMD38_22905 PF00128 Alpha amylase, catalytic domain LMD38_22910 PF00367 phosphotransferase system, EIIB LMD38_22910 PF02378 Phosphotransferase system, EIIC LMD38_22915 PF00392 Bacterial regulatory proteins, gntR family LMD38_22915 PF07702 UTRA domain LMD38_22920 PF13520 Amino acid permease LMD38_22925 PF00563 EAL domain LMD38_22925 PF00990 Diguanylate cyclase, GGDEF domain LMD38_22925 PF03707 Bacterial signalling protein N terminal repeat LMD38_22940 PF13091 PLD-like domain LMD38_22940 PF13396 Phospholipase_D-nuclease N-terminal LMD38_22945 PF07728 AAA domain (dynein-related subfamily) LMD38_22950 PF00092 von Willebrand factor type A domain LMD38_22960 PF13344 Haloacid dehalogenase-like hydrolase LMD38_22960 PF00293 NUDIX domain LMD38_22965 PF00156 Phosphoribosyl transferase domain LMD38_22970 PF01370 NAD dependent epimerase/dehydratase family LMD38_22975 PF00155 Aminotransferase class I and II LMD38_22980 PF08241 Methyltransferase domain LMD38_22985 PF00005 ABC transporter LMD38_22990 PF01032 FecCD transport family LMD38_22995 PF01032 FecCD transport family LMD38_23000 PF01497 Periplasmic binding protein LMD38_23005 PF00854 POT family LMD38_23010 PF08141 Small acid-soluble spore protein H family LMD38_23015 PF01022 Bacterial regulatory protein, arsR family LMD38_23020 PF02652 L-lactate permease LMD38_23025 PF11337 Protein of unknown function (DUF3139) LMD38_23030 PF10415 Fumarase C C-terminus LMD38_23030 PF00206 Lyase LMD38_23035 PF00571 CBS domain LMD38_23035 PF03471 Transporter associated domain LMD38_23035 PF01595 Cyclin M transmembrane N-terminal domain LMD38_23040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_23045 PF07662 Na+ dependent nucleoside transporter C-terminus LMD38_23045 PF01773 Na+ dependent nucleoside transporter N-terminus LMD38_23050 PF03816 Cell envelope-related transcriptional attenuator domain LMD38_23055 PF04294 VanW like protein LMD38_23075 PF03413 Peptidase propeptide and YPEB domain LMD38_23075 PF01447 Thermolysin metallopeptidase, catalytic domain LMD38_23075 PF07504 Fungalysin/Thermolysin Propeptide Motif LMD38_23075 PF02868 Thermolysin metallopeptidase, alpha-helical domain LMD38_23090 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LMD38_23090 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LMD38_23090 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LMD38_23095 PF00403 Heavy-metal-associated domain LMD38_23100 PF01022 Bacterial regulatory protein, arsR family LMD38_23105 PF13520 Amino acid permease LMD38_23110 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LMD38_23110 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LMD38_23120 PF07849 Protein of unknown function (DUF1641) LMD38_23125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LMD38_23125 PF00037 4Fe-4S binding domain LMD38_23125 PF00384 Molybdopterin oxidoreductase LMD38_23125 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LMD38_23125 PF01568 Molydopterin dinucleotide binding domain LMD38_23135 PF02634 FdhD/NarQ family LMD38_23140 PF13508 Acetyltransferase (GNAT) domain LMD38_23140 PF00583 Acetyltransferase (GNAT) family LMD38_23145 PF00486 Transcriptional regulatory protein, C terminal LMD38_23145 PF00072 Response regulator receiver domain LMD38_23150 PF00672 HAMP domain LMD38_23150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_23150 PF18698 Histidine kinase sensor domain LMD38_23150 PF00512 His Kinase A (phospho-acceptor) domain LMD38_23150 PF00989 PAS fold LMD38_23160 PF00155 Aminotransferase class I and II LMD38_23160 PF00392 Bacterial regulatory proteins, gntR family LMD38_23165 PF00892 EamA-like transporter family LMD38_23175 PF13529 Peptidase_C39 like family LMD38_23190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_23190 PF00512 His Kinase A (phospho-acceptor) domain LMD38_23195 PF00486 Transcriptional regulatory protein, C terminal LMD38_23195 PF00072 Response regulator receiver domain LMD38_23200 PF00149 Calcineurin-like phosphoesterase LMD38_23205 PF13416 Bacterial extracellular solute-binding protein LMD38_23210 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_23215 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_23220 PF17912 MalK OB fold domain LMD38_23220 PF00005 ABC transporter LMD38_23225 PF04309 Glycerol-3-phosphate responsive antiterminator LMD38_23250 PF03600 Citrate transporter LMD38_23255 PF12431 Transcriptional regulator LMD38_23255 PF00072 Response regulator receiver domain LMD38_23260 PF00989 PAS fold LMD38_23260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_23260 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LMD38_23260 PF17203 Single cache domain 3 LMD38_23265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_23265 PF00672 HAMP domain LMD38_23265 PF02743 Cache domain LMD38_23270 PF15975 Flotillin LMD38_23270 PF01145 SPFH domain / Band 7 family LMD38_23280 PF08453 Peptidase family M9 N-terminal LMD38_23280 PF18496 Collagenase G catalytic helper subdomain LMD38_23280 PF01752 Collagenase LMD38_23285 PF02028 BCCT, betaine/carnitine/choline family transporter LMD38_23290 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_23295 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_23300 PF00005 ABC transporter LMD38_23305 PF00497 Bacterial extracellular solute-binding proteins, family 3 LMD38_23320 PF04285 Protein of unknown function (DUF444) LMD38_23325 PF08298 PrkA AAA domain LMD38_23325 PF06798 PrkA serine protein kinase C-terminal domain LMD38_23330 PF03707 Bacterial signalling protein N terminal repeat LMD38_23330 PF00990 Diguanylate cyclase, GGDEF domain LMD38_23330 PF00563 EAL domain LMD38_23335 PF00588 SpoU rRNA Methylase family LMD38_23340 PF12671 Putative amidase domain LMD38_23345 PF08331 Domain of unknown function (DUF1730) LMD38_23355 PF13462 Thioredoxin LMD38_23360 PF00905 Penicillin binding protein transpeptidase domain LMD38_23360 PF00912 Transglycosylase LMD38_23365 PF13344 Haloacid dehalogenase-like hydrolase LMD38_23365 PF00293 NUDIX domain LMD38_23370 PF01709 Transcriptional regulator LMD38_23465 PF11023 Zinc-ribbon containing domain LMD38_23470 PF01475 Ferric uptake regulator family LMD38_23475 PF00578 AhpC/TSA family LMD38_23480 PF07885 Ion channel LMD38_23495 PF00005 ABC transporter LMD38_23500 PF00202 Aminotransferase class-III LMD38_23505 PF01645 Conserved region in glutamate synthase LMD38_23505 PF00310 Glutamine amidotransferases class-II LMD38_23505 PF04898 Glutamate synthase central domain LMD38_23505 PF01493 GXGXG motif LMD38_23510 PF06081 Aromatic acid exporter family member 1 LMD38_23515 PF00005 ABC transporter LMD38_23515 PF00664 ABC transporter transmembrane region LMD38_23520 PF04167 Protein of unknown function (DUF402) LMD38_23525 PF14182 YgaB-like protein LMD38_23530 PF04259 Small, acid-soluble spore protein, gamma-type LMD38_23540 PF14815 NUDIX domain LMD38_23540 PF00730 HhH-GPD superfamily base excision DNA repair protein LMD38_23545 PF04307 LexA-binding, inner membrane-associated putative hydrolase LMD38_23550 PF14043 WVELL protein LMD38_23555 PF08176 Small acid-soluble spore protein K family LMD38_23570 PF02631 RecX family LMD38_23575 PF01370 NAD dependent epimerase/dehydratase family LMD38_23575 PF08338 Domain of unknown function (DUF1731) LMD38_23580 PF01979 Amidohydrolase family LMD38_23595 PF04101 Glycosyltransferase family 28 C-terminal domain LMD38_23595 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase LMD38_23600 PF04055 Radical SAM superfamily LMD38_23605 PF02901 Pyruvate formate lyase-like LMD38_23605 PF01228 Glycine radical LMD38_23610 PF00535 Glycosyl transferase family 2 LMD38_23615 PF01370 NAD dependent epimerase/dehydratase family LMD38_23615 PF02911 Formyl transferase, C-terminal domain LMD38_23615 PF00551 Formyl transferase LMD38_23620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LMD38_23620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LMD38_23620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LMD38_23625 PF00535 Glycosyl transferase family 2 LMD38_23640 PF00144 Beta-lactamase LMD38_23645 PF00367 phosphotransferase system, EIIB LMD38_23645 PF02378 Phosphotransferase system, EIIC LMD38_23650 PF04960 Glutaminase LMD38_23675 PF07687 Peptidase dimerisation domain LMD38_23675 PF01546 Peptidase family M20/M25/M40 LMD38_23680 PF00324 Amino acid permease LMD38_23690 PF13426 PAS domain LMD38_23690 PF00158 Sigma-54 interaction domain LMD38_23690 PF02954 Bacterial regulatory protein, Fis family LMD38_23700 PF01416 tRNA pseudouridine synthase LMD38_23705 PF01938 TRAM domain LMD38_23705 PF05958 tRNA (Uracil-5-)-methyltransferase LMD38_23710 PF00730 HhH-GPD superfamily base excision DNA repair protein LMD38_23715 PF01522 Polysaccharide deacetylase LMD38_23720 PF05681 Fumarate hydratase (Fumerase) LMD38_23720 PF05683 Fumarase C-terminus LMD38_23730 PF08756 YfkB-like domain LMD38_23730 PF04055 Radical SAM superfamily LMD38_23735 PF14167 YfkD-like protein LMD38_23740 PF01699 Sodium/calcium exchanger protein LMD38_23745 PF16242 Pyridoxamine 5'-phosphate oxidase like LMD38_23760 PF09335 SNARE associated Golgi protein LMD38_23770 PF10502 Signal peptidase, peptidase S26 LMD38_23785 PF00892 EamA-like transporter family LMD38_23795 PF03631 Virulence factor BrkB LMD38_23805 PF01451 Low molecular weight phosphotyrosine protein phosphatase LMD38_23810 PF06569 Protein of unknown function (DUF1128) LMD38_23815 PF00689 Cation transporting ATPase, C-terminus LMD38_23815 PF00690 Cation transporter/ATPase, N-terminus LMD38_23820 PF05816 Toxic anion resistance protein (TelA) LMD38_23825 PF14266 Putative component of 'biosynthetic module' LMD38_23830 PF03741 Integral membrane protein TerC family LMD38_23835 PF02342 TerD domain LMD38_23840 PF02342 TerD domain LMD38_23845 PF02342 TerD domain LMD38_23850 PF00480 ROK family LMD38_23860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LMD38_23860 PF09180 Prolyl-tRNA synthetase, C-terminal LMD38_23860 PF03129 Anticodon binding domain LMD38_23875 PF11700 Vacuole effluxer Atg22 like LMD38_23895 PF08360 QacR-like protein, C-terminal region LMD38_23895 PF00440 Bacterial regulatory proteins, tetR family LMD38_23915 PF01385 Probable transposase LMD38_23915 PF12323 Helix-turn-helix domain LMD38_23915 PF07282 Putative transposase DNA-binding domain LMD38_23925 PF00041 Fibronectin type III domain LMD38_23925 PF00704 Glycosyl hydrolases family 18 LMD38_23930 PF00005 ABC transporter LMD38_23930 PF12848 ABC transporter LMD38_23940 PF00005 ABC transporter LMD38_23950 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_23955 PF01910 Thiamine-binding protein LMD38_23960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_23960 PF00672 HAMP domain LMD38_23965 PF03605 Anaerobic c4-dicarboxylate membrane transporter LMD38_23970 PF02581 Thiamine monophosphate synthase LMD38_23975 PF02110 Hydroxyethylthiazole kinase family LMD38_23980 PF01131 DNA topoisomerase LMD38_23980 PF01751 Toprim domain LMD38_23985 PF01061 ABC-2 type transporter LMD38_23990 PF03372 Endonuclease/Exonuclease/phosphatase family LMD38_23995 PF02378 Phosphotransferase system, EIIC LMD38_23995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LMD38_23995 PF00367 phosphotransferase system, EIIB LMD38_24000 PF00128 Alpha amylase, catalytic domain LMD38_24000 PF16657 Maltogenic Amylase, C-terminal domain LMD38_24005 PF01565 FAD binding domain LMD38_24005 PF08031 Berberine and berberine like LMD38_24010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_24010 PF12729 Four helix bundle sensory module for signal transduction LMD38_24010 PF00672 HAMP domain LMD38_24015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_24015 PF12729 Four helix bundle sensory module for signal transduction LMD38_24015 PF00672 HAMP domain LMD38_24020 PF00005 ABC transporter LMD38_24025 PF00497 Bacterial extracellular solute-binding proteins, family 3 LMD38_24030 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_24035 PF00072 Response regulator receiver domain LMD38_24045 PF00535 Glycosyl transferase family 2 LMD38_24055 PF00355 Rieske [2Fe-2S] domain LMD38_24055 PF01266 FAD dependent oxidoreductase LMD38_24060 PF07690 Major Facilitator Superfamily LMD38_24065 PF10127 RNA repair pathway DNA polymerase beta family LMD38_24105 PF12728 Helix-turn-helix domain LMD38_24115 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_24120 PF01497 Periplasmic binding protein LMD38_24125 PF01032 FecCD transport family LMD38_24130 PF01032 FecCD transport family LMD38_24150 PF00596 Class II Aldolase and Adducin N-terminal domain LMD38_24165 PF01636 Phosphotransferase enzyme family LMD38_24170 PF00578 AhpC/TSA family LMD38_24175 PF07992 Pyridine nucleotide-disulphide oxidoreductase LMD38_24175 PF13192 Thioredoxin domain LMD38_24190 PF01546 Peptidase family M20/M25/M40 LMD38_24190 PF07687 Peptidase dimerisation domain LMD38_24195 PF03553 Na+/H+ antiporter family LMD38_24205 PF13378 Enolase C-terminal domain-like LMD38_24205 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LMD38_24215 PF00145 C-5 cytosine-specific DNA methylase LMD38_24230 PF07308 Protein of unknown function (DUF1456) LMD38_24235 PF00512 His Kinase A (phospho-acceptor) domain LMD38_24235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_24235 PF00989 PAS fold LMD38_24235 PF13426 PAS domain LMD38_24235 PF13188 PAS domain LMD38_24240 PF01207 Dihydrouridine synthase (Dus) LMD38_24245 PF05958 tRNA (Uracil-5-)-methyltransferase LMD38_24245 PF01938 TRAM domain LMD38_24245 PF02475 Met-10+ like-protein LMD38_24250 PF01773 Na+ dependent nucleoside transporter N-terminus LMD38_24250 PF07662 Na+ dependent nucleoside transporter C-terminus LMD38_24250 PF07670 Nucleoside recognition LMD38_24260 PF02073 Thermophilic metalloprotease (M29) LMD38_24265 PF00893 Small Multidrug Resistance protein LMD38_24270 PF00171 Aldehyde dehydrogenase family LMD38_24275 PF00158 Sigma-54 interaction domain LMD38_24280 PF00202 Aminotransferase class-III LMD38_24285 PF13419 Haloacid dehalogenase-like hydrolase LMD38_24290 PF00781 Diacylglycerol kinase catalytic domain LMD38_24295 PF02934 GatB/GatE catalytic domain LMD38_24295 PF02637 GatB domain LMD38_24300 PF01425 Amidase LMD38_24305 PF02686 Glu-tRNAGln amidotransferase C subunit LMD38_24310 PF05360 yiaA/B two helix domain LMD38_24315 PF01047 MarR family LMD38_24320 PF02374 Anion-transporting ATPase LMD38_24320 PF17886 HSP20-like domain found in ArsA LMD38_24335 PF03180 NLPA lipoprotein LMD38_24340 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_24345 PF09383 NIL domain LMD38_24345 PF00005 ABC transporter LMD38_24350 PF00857 Isochorismatase family LMD38_24360 PF00171 Aldehyde dehydrogenase family LMD38_24365 PF01925 Sulfite exporter TauE/SafE LMD38_24370 PF07537 CamS sex pheromone cAM373 precursor LMD38_24375 PF12826 Helix-hairpin-helix motif LMD38_24375 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LMD38_24375 PF03120 NAD-dependent DNA ligase OB-fold domain LMD38_24375 PF01653 NAD-dependent DNA ligase adenylation domain LMD38_24375 PF00533 BRCA1 C Terminus (BRCT) domain LMD38_24380 PF13361 UvrD-like helicase C-terminal domain LMD38_24380 PF00580 UvrD/REP helicase N-terminal domain LMD38_24385 PF01884 PcrB family LMD38_24405 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LMD38_24405 PF02843 Phosphoribosylglycinamide synthetase, C domain LMD38_24405 PF02844 Phosphoribosylglycinamide synthetase, N domain LMD38_24410 PF02142 MGS-like domain LMD38_24410 PF01808 AICARFT/IMPCHase bienzyme LMD38_24415 PF00551 Formyl transferase LMD38_24420 PF00586 AIR synthase related protein, N-terminal domain LMD38_24420 PF02769 AIR synthase related protein, C-terminal domain LMD38_24425 PF00156 Phosphoribosyl transferase domain LMD38_24430 PF00586 AIR synthase related protein, N-terminal domain LMD38_24430 PF02769 AIR synthase related protein, C-terminal domain LMD38_24430 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LMD38_24440 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase LMD38_24445 PF01259 SAICAR synthetase LMD38_24450 PF00206 Lyase LMD38_24450 PF10397 Adenylosuccinate lyase C-terminus LMD38_24455 PF02222 ATP-grasp domain LMD38_24455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LMD38_24460 PF00731 AIR carboxylase LMD38_24485 PF00892 EamA-like transporter family LMD38_24515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_24515 PF03466 LysR substrate binding domain LMD38_24520 PF01177 Asp/Glu/Hydantoin racemase LMD38_24540 PF00535 Glycosyl transferase family 2 LMD38_24560 PF08241 Methyltransferase domain LMD38_24570 PF14307 Glycosyltransferase WbsX LMD38_24570 PF05045 Rhamnan synthesis protein F LMD38_24590 PF01323 DSBA-like thioredoxin domain LMD38_24615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_24615 PF00512 His Kinase A (phospho-acceptor) domain LMD38_24615 PF00989 PAS fold LMD38_24615 PF16736 Single Cache-like LMD38_24620 PF00486 Transcriptional regulatory protein, C terminal LMD38_24620 PF00072 Response regulator receiver domain LMD38_24625 PF00860 Permease family LMD38_24630 PF00117 Glutamine amidotransferase class-I LMD38_24630 PF00958 GMP synthase C terminal domain LMD38_24630 PF02540 NAD synthase LMD38_24635 PF00118 TCP-1/cpn60 chaperonin family LMD38_24640 PF00166 Chaperonin 10 Kd subunit LMD38_24645 PF02517 CPBP intramembrane metalloprotease LMD38_24655 PF02629 CoA binding domain LMD38_24655 PF06971 Putative DNA-binding protein N-terminus LMD38_24660 PF12848 ABC transporter LMD38_24660 PF00005 ABC transporter LMD38_24660 PF16326 ABC transporter C-terminal domain LMD38_24665 PF00814 Glycoprotease family LMD38_24670 PF00583 Acetyltransferase (GNAT) family LMD38_24675 PF00814 Glycoprotease family LMD38_24680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LMD38_24765 PF10263 SprT-like family LMD38_24765 PF17283 SprT-like zinc ribbon domain LMD38_24775 PF00575 S1 RNA binding domain LMD38_24775 PF16921 Tex protein YqgF-like domain LMD38_24775 PF09371 Tex-like protein N-terminal domain LMD38_24775 PF17674 HHH domain LMD38_24780 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LMD38_24785 PF01402 Ribbon-helix-helix protein, copG family LMD38_24790 PF00842 Alanine racemase, C-terminal domain LMD38_24790 PF01168 Alanine racemase, N-terminal domain LMD38_24800 PF01648 4'-phosphopantetheinyl transferase superfamily LMD38_24805 PF01694 Rhomboid family LMD38_24810 PF03851 UV-endonuclease UvdE LMD38_24815 PF00270 DEAD/DEAH box helicase LMD38_24815 PF00271 Helicase conserved C-terminal domain LMD38_24820 PF08245 Mur ligase middle domain LMD38_24820 PF02875 Mur ligase family, glutamate ligase domain LMD38_24820 PF01225 Mur ligase family, catalytic domain LMD38_24825 PF01820 D-ala D-ala ligase N-terminus LMD38_24825 PF07478 D-ala D-ala ligase C-terminus LMD38_24830 PF07690 Major Facilitator Superfamily LMD38_24835 PF13520 Amino acid permease LMD38_24845 PF01557 Fumarylacetoacetate (FAA) hydrolase family LMD38_24850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LMD38_24885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_24885 PF00005 ABC transporter LMD38_24890 PF00005 ABC transporter LMD38_24890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_24895 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_24895 PF12911 N-terminal TM domain of oligopeptide transport permease C LMD38_24900 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_24905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_24910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_24920 PF12848 ABC transporter LMD38_24920 PF00005 ABC transporter LMD38_24920 PF16326 ABC transporter C-terminal domain LMD38_24945 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) LMD38_24955 PF01026 TatD related DNase LMD38_24965 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LMD38_24965 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LMD38_24975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LMD38_24975 PF00356 Bacterial regulatory proteins, lacI family LMD38_24985 PF01553 Acyltransferase LMD38_24995 PF14142 YrzO-like protein LMD38_25000 PF00892 EamA-like transporter family LMD38_25005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_25005 PF03466 LysR substrate binding domain LMD38_25015 PF12728 Helix-turn-helix domain LMD38_25015 PF12727 PBP superfamily domain LMD38_25025 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_25030 PF06800 Sugar transport protein LMD38_25035 PF04973 Nicotinamide mononucleotide transporter LMD38_25040 PF14748 Pyrroline-5-carboxylate reductase dimerisation LMD38_25040 PF03807 NADP oxidoreductase coenzyme F420-dependent LMD38_25045 PF00248 Aldo/keto reductase family LMD38_25050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_25055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_25065 PF00440 Bacterial regulatory proteins, tetR family LMD38_25080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LMD38_25085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_25085 PF00005 ABC transporter LMD38_25090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LMD38_25090 PF00005 ABC transporter LMD38_25095 PF12911 N-terminal TM domain of oligopeptide transport permease C LMD38_25095 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_25100 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_25115 PF07690 Major Facilitator Superfamily LMD38_25125 PF07690 Major Facilitator Superfamily LMD38_25130 PF01565 FAD binding domain LMD38_25140 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_25140 PF00107 Zinc-binding dehydrogenase LMD38_25145 PF03180 NLPA lipoprotein LMD38_25150 PF09383 NIL domain LMD38_25150 PF00005 ABC transporter LMD38_25155 PF00528 Binding-protein-dependent transport system inner membrane component LMD38_25220 PF15978 Tn7-like transposition protein D LMD38_25220 PF06527 TniQ LMD38_25225 PF11426 Tn7 transposition regulator TnsC LMD38_25225 PF13401 AAA domain LMD38_25230 PF00665 Integrase core domain LMD38_25240 PF01695 IstB-like ATP binding protein LMD38_25245 PF02796 Helix-turn-helix domain of resolvase LMD38_25245 PF00665 Integrase core domain LMD38_25265 PF00664 ABC transporter transmembrane region LMD38_25265 PF00005 ABC transporter LMD38_25265 PF03412 Peptidase C39 family LMD38_25290 PF01381 Helix-turn-helix LMD38_25295 PF13307 Helicase C-terminal domain LMD38_25305 PF01380 SIS domain LMD38_25315 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LMD38_25315 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LMD38_25315 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LMD38_25315 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LMD38_25320 PF07949 YbbR-like protein LMD38_25325 PF02457 DisA bacterial checkpoint controller nucleotide-binding LMD38_25330 PF00491 Arginase family LMD38_25335 PF02595 Glycerate kinase family LMD38_25405 PF01522 Polysaccharide deacetylase LMD38_25410 PF14089 KinB-signalling pathway activation in sporulation LMD38_25415 PF17898 Spore germination GerD central core domain LMD38_25420 PF10609 NUBPL iron-transfer P-loop NTPase LMD38_25425 PF01520 N-acetylmuramoyl-L-alanine amidase LMD38_25435 PF00380 Ribosomal protein S9/S16 LMD38_25440 PF00572 Ribosomal protein L13 LMD38_25445 PF01416 tRNA pseudouridine synthase LMD38_25450 PF02361 Cobalt transport protein LMD38_25455 PF00005 ABC transporter LMD38_25460 PF00005 ABC transporter LMD38_25465 PF01196 Ribosomal protein L17 LMD38_25470 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LMD38_25470 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LMD38_25470 PF01000 RNA polymerase Rpb3/RpoA insert domain LMD38_25475 PF00411 Ribosomal protein S11 LMD38_25480 PF00416 Ribosomal protein S13/S18 LMD38_25485 PF00444 Ribosomal protein L36 LMD38_25490 PF01176 Translation initiation factor 1A / IF-1 LMD38_25495 PF00557 Metallopeptidase family M24 LMD38_25500 PF05191 Adenylate kinase, active site lid LMD38_25505 PF00344 SecY translocase LMD38_25510 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LMD38_25515 PF00327 Ribosomal protein L30p/L7e LMD38_25520 PF00333 Ribosomal protein S5, N-terminal domain LMD38_25520 PF03719 Ribosomal protein S5, C-terminal domain LMD38_25525 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LMD38_25530 PF00347 Ribosomal protein L6 LMD38_25535 PF00410 Ribosomal protein S8 LMD38_25540 PF00253 Ribosomal protein S14p/S29e LMD38_25545 PF00281 Ribosomal protein L5 LMD38_25545 PF00673 ribosomal L5P family C-terminus LMD38_25550 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LMD38_25550 PF00467 KOW motif LMD38_25555 PF00238 Ribosomal protein L14p/L23e LMD38_25560 PF00366 Ribosomal protein S17 LMD38_25565 PF00831 Ribosomal L29 protein LMD38_25570 PF00252 Ribosomal protein L16p/L10e LMD38_25575 PF07650 KH domain LMD38_25575 PF00189 Ribosomal protein S3, C-terminal domain LMD38_25580 PF00237 Ribosomal protein L22p/L17e LMD38_25585 PF00203 Ribosomal protein S19 LMD38_25590 PF03947 Ribosomal Proteins L2, C-terminal domain LMD38_25590 PF00181 Ribosomal Proteins L2, RNA binding domain LMD38_25595 PF00276 Ribosomal protein L23 LMD38_25600 PF00573 Ribosomal protein L4/L1 family LMD38_25605 PF00297 Ribosomal protein L3 LMD38_25610 PF00338 Ribosomal protein S10p/S20e LMD38_25615 PF00009 Elongation factor Tu GTP binding domain LMD38_25615 PF03144 Elongation factor Tu domain 2 LMD38_25615 PF03143 Elongation factor Tu C-terminal domain LMD38_25620 PF14492 Elongation Factor G, domain II LMD38_25620 PF00679 Elongation factor G C-terminus LMD38_25620 PF03144 Elongation factor Tu domain 2 LMD38_25620 PF03764 Elongation factor G, domain IV LMD38_25620 PF00009 Elongation factor Tu GTP binding domain LMD38_25625 PF00177 Ribosomal protein S7p/S5e LMD38_25630 PF00164 Ribosomal protein S12/S23 LMD38_25635 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LMD38_25640 PF05000 RNA polymerase Rpb1, domain 4 LMD38_25640 PF04998 RNA polymerase Rpb1, domain 5 LMD38_25640 PF04997 RNA polymerase Rpb1, domain 1 LMD38_25640 PF04983 RNA polymerase Rpb1, domain 3 LMD38_25640 PF00623 RNA polymerase Rpb1, domain 2 LMD38_25645 PF10385 RNA polymerase beta subunit external 1 domain LMD38_25645 PF04560 RNA polymerase Rpb2, domain 7 LMD38_25645 PF04563 RNA polymerase beta subunit LMD38_25645 PF04561 RNA polymerase Rpb2, domain 2 LMD38_25645 PF00562 RNA polymerase Rpb2, domain 6 LMD38_25645 PF04565 RNA polymerase Rpb2, domain 3 LMD38_25650 PF05175 Methyltransferase small domain LMD38_25655 PF00542 Ribosomal protein L7/L12 C-terminal domain LMD38_25655 PF16320 Ribosomal protein L7/L12 dimerisation domain LMD38_25660 PF00466 Ribosomal protein L10 LMD38_25665 PF00687 Ribosomal protein L1p/L10e family LMD38_25670 PF00298 Ribosomal protein L11, RNA binding domain LMD38_25670 PF03946 Ribosomal protein L11, N-terminal domain LMD38_25675 PF00467 KOW motif LMD38_25675 PF02357 Transcription termination factor nusG LMD38_25680 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LMD38_25685 PF00471 Ribosomal protein L33 LMD38_25690 PF04542 Sigma-70 region 2 LMD38_25690 PF08281 Sigma-70, region 4 LMD38_25695 PF05991 YacP-like NYN domain LMD38_25700 PF00588 SpoU rRNA Methylase family LMD38_25700 PF08032 RNA 2'-O ribose methyltransferase substrate binding LMD38_25705 PF00636 Ribonuclease III domain LMD38_25710 PF09190 DALR domain LMD38_25710 PF01406 tRNA synthetases class I (C) catalytic domain LMD38_25715 PF00132 Bacterial transferase hexapeptide (six repeats) LMD38_25715 PF06426 Serine acetyltransferase, N-terminal LMD38_25720 PF00749 tRNA synthetases class I (E and Q), catalytic domain LMD38_25725 PF02542 YgbB family LMD38_25730 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LMD38_25740 PF02457 DisA bacterial checkpoint controller nucleotide-binding LMD38_25740 PF10635 DisA bacterial checkpoint controller linker region LMD38_25745 PF18073 Rubredoxin metal binding domain LMD38_25750 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_25750 PF07724 AAA domain (Cdc48 subfamily) LMD38_25750 PF17871 AAA lid domain LMD38_25750 PF02861 Clp amino terminal domain, pathogenicity island component LMD38_25750 PF10431 C-terminal, D2-small domain, of ClpB protein LMD38_25755 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain LMD38_25760 PF02151 UvrB/uvrC motif LMD38_25765 PF05848 CtsR N-terminal HTH domain LMD38_25765 PF17727 CtsR C-terminal dimerization domain LMD38_25845 PF01336 OB-fold nucleic acid binding domain LMD38_25845 PF00152 tRNA synthetases class II (D, K and N) LMD38_25850 PF01207 Dihydrouridine synthase (Dus) LMD38_25855 PF01381 Helix-turn-helix LMD38_25860 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LMD38_25865 PF02152 Dihydroneopterin aldolase LMD38_25870 PF00809 Pterin binding enzyme LMD38_25875 PF01063 Amino-transferase class IV LMD38_25880 PF00117 Glutamine amidotransferase class-I LMD38_25885 PF04715 Anthranilate synthase component I, N terminal region LMD38_25885 PF00425 chorismate binding enzyme LMD38_25890 PF00291 Pyridoxal-phosphate dependent enzyme LMD38_25895 PF01430 Hsp33 protein LMD38_25900 PF03309 Type III pantothenate kinase LMD38_25905 PF01434 Peptidase family M41 LMD38_25905 PF17862 AAA+ lid domain LMD38_25905 PF00004 ATPase family associated with various cellular activities (AAA) LMD38_25905 PF06480 FtsH Extracellular LMD38_25910 PF00156 Phosphoribosyl transferase domain LMD38_25915 PF01171 PP-loop family LMD38_25915 PF09179 TilS substrate binding domain LMD38_25915 PF11734 TilS substrate C-terminal domain LMD38_25920 PF07228 Stage II sporulation protein E (SpoIIE) LMD38_25935 PF00575 S1 RNA binding domain LMD38_25945 PF09578 Spore cortex protein YabQ (Spore_YabQ) LMD38_25950 PF07873 YabP family LMD38_25955 PF01479 S4 domain LMD38_25960 PF03819 MazG nucleotide pyrophosphohydrolase domain LMD38_25960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LMD38_25965 PF14667 Polysaccharide biosynthesis C-terminal domain LMD38_25965 PF01943 Polysaccharide biosynthesis protein LMD38_25970 PF15714 Stage V sporulation protein T C-terminal, transcription factor LMD38_25970 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LMD38_25975 PF02559 CarD-like/TRCF domain LMD38_25975 PF00270 DEAD/DEAH box helicase LMD38_25975 PF00271 Helicase conserved C-terminal domain LMD38_25975 PF03461 TRCF domain LMD38_25975 PF17757 UvrB interaction domain LMD38_25985 PF01195 Peptidyl-tRNA hydrolase LMD38_25990 PF14572 Phosphoribosyl synthetase-associated domain LMD38_25990 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LMD38_25995 PF00132 Bacterial transferase hexapeptide (six repeats) LMD38_25995 PF00483 Nucleotidyl transferase LMD38_26000 PF04026 SpoVG LMD38_26005 PF01042 Endoribonuclease L-PSP LMD38_26010 PF00156 Phosphoribosyl transferase domain LMD38_26010 PF09182 Bacterial purine repressor, N-terminal LMD38_26015 PF08544 GHMP kinases C terminal LMD38_26015 PF00288 GHMP kinases N terminal domain LMD38_26020 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_26025 PF06257 Biofilm formation stimulator VEG LMD38_26030 PF05582 YabG peptidase U57 LMD38_26035 PF00398 Ribosomal RNA adenine dimethylase LMD38_26040 PF13331 Domain of unknown function (DUF4093) LMD38_26040 PF13662 Toprim domain LMD38_26045 PF01026 TatD related DNase LMD38_26050 PF08264 Anticodon-binding domain of tRNA LMD38_26050 PF09334 tRNA synthetases class I (M) LMD38_26050 PF01588 Putative tRNA binding domain LMD38_26055 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LMD38_26055 PF18277 AbrB C-terminal domain LMD38_26060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LMD38_26065 PF01541 GIY-YIG catalytic domain LMD38_26070 PF05175 Methyltransferase small domain LMD38_26075 PF06156 Initiation control protein YabA LMD38_26080 PF04468 PSP1 C-terminal conserved region LMD38_26085 PF09115 DNA polymerase III, delta subunit, C terminal LMD38_26090 PF02223 Thymidylate kinase LMD38_26095 PF01276 Orn/Lys/Arg decarboxylase, major domain LMD38_26095 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LMD38_26130 PF07441 SigmaK-factor processing regulatory protein BofA LMD38_26135 PF10704 Protein of unknown function (DUF2508) LMD38_26140 PF02132 RecR protein LMD38_26140 PF13662 Toprim domain LMD38_26145 PF02575 YbaB/EbfC DNA-binding family LMD38_26150 PF12169 DNA polymerase III subunits gamma and tau domain III LMD38_26160 PF14437 MafB19-like deaminase LMD38_26165 PF00857 Isochorismatase family LMD38_26170 PF01712 Deoxynucleoside kinase LMD38_26175 PF01712 Deoxynucleoside kinase LMD38_26190 PF02403 Seryl-tRNA synthetase N-terminal domain LMD38_26190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LMD38_26195 PF01174 SNO glutamine amidotransferase family LMD38_26200 PF01680 SOR/SNZ family LMD38_26205 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_26205 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_26210 PF00478 IMP dehydrogenase / GMP reductase domain LMD38_26210 PF00571 CBS domain LMD38_26215 PF14175 YaaC-like Protein LMD38_26245 PF03989 DNA gyrase C-terminal domain, beta-propeller LMD38_26245 PF00521 DNA gyrase/topoisomerase IV, subunit A LMD38_26250 PF00204 DNA gyrase B LMD38_26250 PF00986 DNA gyrase B subunit, carboxyl terminus LMD38_26250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_26250 PF01751 Toprim domain LMD38_26255 PF02463 RecF/RecN/SMC N terminal domain LMD38_26265 PF00712 DNA polymerase III beta subunit, N-terminal domain LMD38_26265 PF02767 DNA polymerase III beta subunit, central domain LMD38_26265 PF02768 DNA polymerase III beta subunit, C-terminal domain LMD38_26270 PF00308 Bacterial dnaA protein LMD38_26270 PF08299 Bacterial dnaA protein helix-turn-helix LMD38_26270 PF11638 DnaA N-terminal domain LMD38_26275 PF00468 Ribosomal protein L34 LMD38_26280 PF00825 Ribonuclease P LMD38_26285 PF02096 60Kd inner membrane protein LMD38_26290 PF14804 Jag N-terminus LMD38_26290 PF01424 R3H domain LMD38_26295 PF01926 50S ribosome-binding GTPase LMD38_26295 PF12631 MnmE helical domain LMD38_26295 PF10396 GTP-binding protein TrmE N-terminus LMD38_26300 PF01134 Glucose inhibited division protein A LMD38_26300 PF13932 GidA associated domain LMD38_26305 PF02527 rRNA small subunit methyltransferase G LMD38_26310 PF02195 ParB-like nuclease domain LMD38_26310 PF17762 HTH domain found in ParB protein LMD38_26315 PF13614 AAA domain LMD38_26320 PF02195 ParB-like nuclease domain LMD38_26320 PF17762 HTH domain found in ParB protein LMD38_26325 PF06866 Protein of unknown function (DUF1256) LMD38_26330 PF00924 Mechanosensitive ion channel LMD38_26335 PF06107 Bacterial protein of unknown function (DUF951) LMD38_26340 PF01926 50S ribosome-binding GTPase LMD38_26340 PF06071 Protein of unknown function (DUF933) LMD38_26345 PF01250 Ribosomal protein S6 LMD38_26350 PF00436 Single-strand binding protein family LMD38_26355 PF01084 Ribosomal protein S18 LMD38_26360 PF09991 Predicted membrane protein (DUF2232) LMD38_26365 PF01368 DHH family LMD38_26365 PF02272 DHHA1 domain LMD38_26370 PF03948 Ribosomal protein L9, C-terminal domain LMD38_26370 PF01281 Ribosomal protein L9, N-terminal domain LMD38_26375 PF00772 DnaB-like helicase N terminal domain LMD38_26375 PF03796 DnaB-like helicase C terminal domain LMD38_26380 PF00709 Adenylosuccinate synthetase LMD38_26405 PF00486 Transcriptional regulatory protein, C terminal LMD38_26405 PF00072 Response regulator receiver domain LMD38_26410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_26410 PF00672 HAMP domain LMD38_26410 PF13426 PAS domain LMD38_26410 PF00512 His Kinase A (phospho-acceptor) domain LMD38_26415 PF07435 YycH protein LMD38_26420 PF09648 YycH protein LMD38_26425 PF00753 Metallo-beta-lactamase superfamily LMD38_26430 PF13180 PDZ domain LMD38_26440 PF02590 Predicted SPOUT methyltransferase LMD38_26450 PF13614 AAA domain LMD38_26470 PF01381 Helix-turn-helix LMD38_26485 PF07508 Recombinase LMD38_26485 PF00239 Resolvase, N terminal domain LMD38_26520 PF01432 Peptidase family M3 LMD38_26520 PF08439 Oligopeptidase F LMD38_26525 PF00478 IMP dehydrogenase / GMP reductase domain LMD38_26530 PF03880 DbpA RNA binding domain LMD38_26530 PF00270 DEAD/DEAH box helicase LMD38_26530 PF00271 Helicase conserved C-terminal domain LMD38_26540 PF03006 Haemolysin-III related LMD38_26545 PF01695 IstB-like ATP binding protein LMD38_26550 PF02796 Helix-turn-helix domain of resolvase LMD38_26550 PF00665 Integrase core domain LMD38_26555 PF16363 GDP-mannose 4,6 dehydratase LMD38_26590 PF02293 AmiS/UreI family transporter LMD38_26600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LMD38_26600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LMD38_26605 PF02898 Nitric oxide synthase, oxygenase domain LMD38_26610 PF02028 BCCT, betaine/carnitine/choline family transporter LMD38_26615 PF07690 Major Facilitator Superfamily LMD38_26620 PF06580 Histidine kinase LMD38_26620 PF13492 GAF domain LMD38_26620 PF07694 5TMR of 5TMR-LYT LMD38_26620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_26625 PF00072 Response regulator receiver domain LMD38_26625 PF04397 LytTr DNA-binding domain LMD38_26630 PF03788 LrgA family LMD38_26635 PF04172 LrgB-like family LMD38_26640 PF01594 AI-2E family transporter LMD38_26645 PF01625 Peptide methionine sulfoxide reductase LMD38_26645 PF01641 SelR domain LMD38_26650 PF00873 AcrB/AcrD/AcrF family LMD38_26655 PF00440 Bacterial regulatory proteins, tetR family LMD38_26660 PF00535 Glycosyl transferase family 2 LMD38_26675 PF12848 ABC transporter LMD38_26675 PF00005 ABC transporter LMD38_26690 PF00535 Glycosyl transferase family 2 LMD38_26700 PF00535 Glycosyl transferase family 2 LMD38_26705 PF03061 Thioesterase superfamily LMD38_26735 PF07690 Major Facilitator Superfamily LMD38_26740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_26745 PF03458 UPF0126 domain LMD38_26755 PF00534 Glycosyl transferases group 1 LMD38_26755 PF13439 Glycosyltransferase Family 4 LMD38_26760 PF03808 Glycosyl transferase WecB/TagA/CpsF family LMD38_26765 PF07690 Major Facilitator Superfamily LMD38_26770 PF00072 Response regulator receiver domain LMD38_26770 PF04397 LytTr DNA-binding domain LMD38_26775 PF13722 5TM C-terminal transporter carbon starvation CstA LMD38_26775 PF02554 Carbon starvation protein CstA LMD38_26780 PF04328 Selenoprotein, putative LMD38_26785 PF07694 5TMR of 5TMR-LYT LMD38_26785 PF00990 Diguanylate cyclase, GGDEF domain LMD38_26790 PF08543 Phosphomethylpyrimidine kinase LMD38_26795 PF13185 GAF domain LMD38_26795 PF07730 Histidine kinase LMD38_26800 PF00072 Response regulator receiver domain LMD38_26800 PF00196 Bacterial regulatory proteins, luxR family LMD38_26805 PF02525 Flavodoxin-like fold LMD38_26810 PF00027 Cyclic nucleotide-binding domain LMD38_26815 PF13419 Haloacid dehalogenase-like hydrolase LMD38_26820 PF01053 Cys/Met metabolism PLP-dependent enzyme LMD38_26825 PF04204 Homoserine O-succinyltransferase LMD38_26830 PF03447 Homoserine dehydrogenase, NAD binding domain LMD38_26830 PF00742 Homoserine dehydrogenase LMD38_26830 PF01842 ACT domain LMD38_26840 PF00356 Bacterial regulatory proteins, lacI family LMD38_26840 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LMD38_26845 PF13472 GDSL-like Lipase/Acylhydrolase family LMD38_26850 PF00005 ABC transporter LMD38_26855 PF12679 ABC-2 family transporter protein LMD38_26860 PF03167 Uracil DNA glycosylase superfamily LMD38_26865 PF12823 Domain of unknown function (DUF3817) LMD38_26875 PF00860 Permease family LMD38_26890 PF04241 Protein of unknown function (DUF423) LMD38_26895 PF09671 Spore coat protein (Spore_GerQ) LMD38_26900 PF07486 Cell Wall Hydrolase LMD38_26905 PF00768 D-alanyl-D-alanine carboxypeptidase LMD38_26905 PF07943 Penicillin-binding protein 5, C-terminal domain LMD38_26910 PF06778 Chlorite dismutase LMD38_26915 PF01515 Phosphate acetyl/butaryl transferase LMD38_26920 PF03099 Biotin/lipoate A/B protein ligase family LMD38_26930 PF07293 Protein of unknown function (DUF1450) LMD38_26935 PF01032 FecCD transport family LMD38_26940 PF01032 FecCD transport family LMD38_26945 PF00005 ABC transporter LMD38_26950 PF01497 Periplasmic binding protein LMD38_26955 PF01966 HD domain LMD38_26960 PF01361 Tautomerase enzyme LMD38_26965 PF02163 Peptidase family M50 LMD38_26970 PF08741 YwhD family LMD38_26975 PF00912 Transglycosylase LMD38_26975 PF00905 Penicillin binding protein transpeptidase domain LMD38_26980 PF03009 Glycerophosphoryl diester phosphodiesterase family LMD38_26985 PF13411 MerR HTH family regulatory protein LMD38_26990 PF07690 Major Facilitator Superfamily LMD38_26995 PF17284 Spermidine synthase tetramerisation domain LMD38_27000 PF00491 Arginase family LMD38_27015 PF17676 LD-carboxypeptidase C-terminal domain LMD38_27015 PF02016 LD-carboxypeptidase N-terminal domain LMD38_27020 PF09148 Domain of unknown function (DUF1934) LMD38_27025 PF00750 tRNA synthetases class I (R) LMD38_27025 PF03485 Arginyl tRNA synthetase N terminal domain LMD38_27025 PF05746 DALR anticodon binding domain LMD38_27035 PF00733 Asparagine synthase LMD38_27035 PF13537 Glutamine amidotransferase domain LMD38_27040 PF03466 LysR substrate binding domain LMD38_27040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_27060 PF00583 Acetyltransferase (GNAT) family LMD38_27065 PF01047 MarR family LMD38_27075 PF00392 Bacterial regulatory proteins, gntR family LMD38_27075 PF00155 Aminotransferase class I and II LMD38_27080 PF04299 Putative FMN-binding domain LMD38_27085 PF00701 Dihydrodipicolinate synthetase family LMD38_27095 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_27095 PF00589 Phage integrase family LMD38_27100 PF00589 Phage integrase family LMD38_27100 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_27110 PF18277 AbrB C-terminal domain LMD38_27110 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LMD38_27130 PF07282 Putative transposase DNA-binding domain LMD38_27130 PF01385 Probable transposase LMD38_27130 PF12323 Helix-turn-helix domain LMD38_27135 PF00216 Bacterial DNA-binding protein LMD38_27140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_27155 PF04235 Protein of unknown function (DUF418) LMD38_27175 PF03466 LysR substrate binding domain LMD38_27175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LMD38_27180 PF01810 LysE type translocator LMD38_27230 PF10087 Uncharacterized protein conserved in bacteria (DUF2325) LMD38_27430 PF07282 Putative transposase DNA-binding domain LMD38_27430 PF01385 Probable transposase LMD38_27430 PF12323 Helix-turn-helix domain LMD38_27445 PF00091 Tubulin/FtsZ family, GTPase domain LMD38_27460 PF09397 Ftsk gamma domain LMD38_27460 PF01580 FtsK/SpoIIIE family LMD38_27460 PF17854 FtsK alpha domain LMD38_27465 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_27525 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_27525 PF01348 Type II intron maturase LMD38_27580 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_27580 PF01348 Type II intron maturase LMD38_27610 PF03515 Colicin-like bacteriocin tRNase domain LMD38_27610 PF09000 Cytotoxic LMD38_27610 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 LMD38_27615 PF05922 Peptidase inhibitor I9 LMD38_27615 PF00082 Subtilase family LMD38_27645 PF00082 Subtilase family LMD38_27670 PF02796 Helix-turn-helix domain of resolvase LMD38_27670 PF00239 Resolvase, N terminal domain LMD38_27690 PF01022 Bacterial regulatory protein, arsR family LMD38_27710 PF10899 Putative abortive phage resistance protein AbiGi, antitoxin LMD38_27720 PF08239 Bacterial SH3 domain LMD38_27720 PF00877 NlpC/P60 family LMD38_27720 PF01476 LysM domain LMD38_27735 PF02868 Thermolysin metallopeptidase, alpha-helical domain LMD38_27735 PF01447 Thermolysin metallopeptidase, catalytic domain LMD38_27735 PF03413 Peptidase propeptide and YPEB domain LMD38_27735 PF07504 Fungalysin/Thermolysin Propeptide Motif LMD38_27740 PF13426 PAS domain LMD38_27740 PF08447 PAS fold LMD38_27740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LMD38_27745 PF00269 Small, acid-soluble spore proteins, alpha/beta type LMD38_27755 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LMD38_27755 PF18416 N-acetylglucosamine binding protein domain 2 LMD38_27785 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_27790 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LMD38_27830 PF08378 Nuclease-related domain LMD38_27860 PF00005 ABC transporter LMD38_27860 PF00664 ABC transporter transmembrane region LMD38_27890 PF13342 C-terminal repeat of topoisomerase LMD38_27890 PF01751 Toprim domain LMD38_27890 PF01131 DNA topoisomerase LMD38_27895 PF00565 Staphylococcal nuclease homologue LMD38_27910 PF02600 Disulfide bond formation protein DsbB LMD38_27915 PF01022 Bacterial regulatory protein, arsR family LMD38_27920 PF17209 Hfq protein LMD38_27935 PF18801 response regulator aspartate phosphatase H, N terminal LMD38_27980 PF00589 Phage integrase family LMD38_27990 PF00356 Bacterial regulatory proteins, lacI family LMD38_27990 PF13407 Periplasmic binding protein domain LMD38_27995 PF00367 phosphotransferase system, EIIB LMD38_27995 PF02378 Phosphotransferase system, EIIC LMD38_28000 PF00251 Glycosyl hydrolases family 32 N-terminal domain LMD38_28000 PF08244 Glycosyl hydrolases family 32 C terminal LMD38_28005 PF00294 pfkB family carbohydrate kinase LMD38_28025 PF00665 Integrase core domain LMD38_28025 PF02796 Helix-turn-helix domain of resolvase LMD38_28030 PF01695 IstB-like ATP binding protein LMD38_28045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LMD38_28045 PF00989 PAS fold LMD38_28045 PF16736 Single Cache-like LMD38_28045 PF00512 His Kinase A (phospho-acceptor) domain LMD38_28050 PF00072 Response regulator receiver domain LMD38_28050 PF00486 Transcriptional regulatory protein, C terminal LMD38_28055 PF13529 Peptidase_C39 like family LMD38_28060 PF00857 Isochorismatase family LMD38_28070 PF05504 Spore germination B3/ GerAC like, C-terminal LMD38_28080 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_28095 PF18419 ATP-grasp-like domain LMD38_28095 PF04262 Glutamate-cysteine ligase LMD38_28095 PF02655 ATP-grasp domain LMD38_28105 PF00756 Putative esterase LMD38_28110 PF08240 Alcohol dehydrogenase GroES-like domain LMD38_28110 PF00107 Zinc-binding dehydrogenase LMD38_28115 PF01638 HxlR-like helix-turn-helix LMD38_28120 PF01609 Transposase DDE domain LMD38_28135 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_28140 PF03845 Spore germination protein LMD38_28150 PF02796 Helix-turn-helix domain of resolvase LMD38_28150 PF00239 Resolvase, N terminal domain LMD38_28155 PF00574 Clp protease LMD38_28160 PF04239 Protein of unknown function (DUF421) LMD38_28170 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LMD38_28175 PF07451 Stage V sporulation protein AD (SpoVAD) LMD38_28180 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LMD38_28200 PF04239 Protein of unknown function (DUF421) LMD38_28205 PF13091 PLD-like domain LMD38_28205 PF13396 Phospholipase_D-nuclease N-terminal LMD38_28220 PF13443 Cro/C1-type HTH DNA-binding domain LMD38_28225 PF11188 Protein of unknown function (DUF2975) LMD38_28230 PF00239 Resolvase, N terminal domain LMD38_28230 PF02796 Helix-turn-helix domain of resolvase LMD38_28235 PF13700 Domain of unknown function (DUF4158) LMD38_28235 PF01526 Tn3 transposase DDE domain LMD38_28260 PF01695 IstB-like ATP binding protein LMD38_28280 PF05036 Sporulation related domain LMD38_28280 PF01520 N-acetylmuramoyl-L-alanine amidase LMD38_28290 PF00239 Resolvase, N terminal domain LMD38_28290 PF02796 Helix-turn-helix domain of resolvase LMD38_28295 PF12833 Helix-turn-helix domain LMD38_28295 PF06445 GyrI-like small molecule binding domain LMD38_28300 PF00239 Resolvase, N terminal domain LMD38_28300 PF02796 Helix-turn-helix domain of resolvase LMD38_28310 PF02600 Disulfide bond formation protein DsbB LMD38_28315 PF00535 Glycosyl transferase family 2 LMD38_28320 PF00085 Thioredoxin LMD38_28325 PF03412 Peptidase C39 family LMD38_28325 PF00005 ABC transporter LMD38_28325 PF00664 ABC transporter transmembrane region LMD38_28340 PF00239 Resolvase, N terminal domain LMD38_28340 PF18010 Cry35Ab1 HTH C-terminal domain LMD38_28355 PF01022 Bacterial regulatory protein, arsR family LMD38_28375 PF14436 Bacterial EndoU nuclease LMD38_28375 PF04740 LXG domain of WXG superfamily LMD38_28405 PF02899 Phage integrase, N-terminal SAM-like domain LMD38_28405 PF00589 Phage integrase family LMD38_28420 PF01526 Tn3 transposase DDE domain LMD38_28420 PF13700 Domain of unknown function (DUF4158) LMD38_28425 PF00239 Resolvase, N terminal domain LMD38_28425 PF02796 Helix-turn-helix domain of resolvase LMD38_28430 PF00455 DeoR C terminal sensor domain LMD38_28430 PF08220 DeoR-like helix-turn-helix domain LMD38_28435 PF13419 Haloacid dehalogenase-like hydrolase LMD38_28440 PF01609 Transposase DDE domain LMD38_28450 PF01037 Lrp/AsnC ligand binding domain LMD38_28460 PF03831 PhnA domain LMD38_28460 PF08274 PhnA Zinc-Ribbon LMD38_28465 PF00550 Phosphopantetheine attachment site LMD38_28475 PF00916 Sulfate permease family LMD38_28475 PF01740 STAS domain LMD38_28485 PF01022 Bacterial regulatory protein, arsR family LMD38_28490 PF13529 Peptidase_C39 like family LMD38_28495 PF02796 Helix-turn-helix domain of resolvase LMD38_28495 PF00239 Resolvase, N terminal domain LMD38_28505 PF01526 Tn3 transposase DDE domain LMD38_28505 PF13700 Domain of unknown function (DUF4158) LMD38_28510 PF00239 Resolvase, N terminal domain LMD38_28510 PF02796 Helix-turn-helix domain of resolvase LMD38_28515 PF00011 Hsp20/alpha crystallin family LMD38_28520 PF06445 GyrI-like small molecule binding domain LMD38_28520 PF12833 Helix-turn-helix domain LMD38_28530 PF03323 Bacillus/Clostridium GerA spore germination protein LMD38_28535 PF03845 Spore germination protein LMD38_28555 PF12008 Type I restriction and modification enzyme - subunit R C terminal LMD38_28555 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LMD38_28555 PF18766 SWI2/SNF2 ATPase LMD38_28565 PF12161 HsdM N-terminal domain LMD38_28565 PF02384 N-6 DNA Methylase