locus-tag	class	description
SIOphi_00030	COG1388	LysM domain
SIOphi_00030	COG3584	3D domain protein
SIOphi_00190	COG5632	N-Acetylmuramoyl-L-alanine amidase
SIOphi_00190	COG3409	Peptidoglycan-binding domain 1 protein
SIOphi_00195	COG1702	phosphate starvation-inducible protein PhoH
SIOphi_00215	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
SIOphi_00245	COG3420	alginic acid biosynthetic process
SIOphi_00245	COG5434	Belongs to the glycosyl hydrolase 28 family
SIOphi_00250	COG4195	phage-related replication protein
SIOphi_00610	COG1674	ftsk spoiiie
SIOphi_00625	COG0739	heme binding
SIOphi_00805	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
SIOphi_00830	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SIOphi_00830	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SIOphi_00835	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SIOphi_00835	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SIOphi_00880	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
SIOphi_00885	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SIOphi_00895	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SIOphi_00900	COG1780	Probably involved in ribonucleotide reductase function
SIOphi_00935	COG0419	ATPase involved in DNA repair
SIOphi_00940	COG0420	3'-5' exonuclease activity
SIOphi_00955	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
SIOphi_01025	COG0791	NLP P60 protein
SIOphi_01025	COG3883	PFAM NLP P60 protein