locus_tag old_locus_tag gene Name start end strand product note type ID NCBI VIOLETTEMAD_1 VIOLETTEMAD_1 VIOLETTEMAD_1 205 345 - hypothetical protein AJ added.~SD 189 is poor%2C but has some coding potential (covers all) and six 1:1 blast matches%2C plus a 1:1 to a bacterial sequence.~NKF gene gene-VIOLETTEMAD_1 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_1 VIOLETTEMAD_10 VIOLETTEMAD_10 VIOLETTEMAD_10 3922 4062 - hypothetical protein SSC: 3922 - 4062~Predicted by: G%26G~Length: 141~SD Score: 481%2C not highest~CP: covers all CP~gap/overlap: gap of 4~Longest ORF?: yes~Blast: 3 1:1 matches%2C top match Claudi%2C 97%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_10 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_10 VIOLETTEMAD_11 VIOLETTEMAD_11 VIOLETTEMAD_11 4066 4392 - hypothetical protein SSC: 4066 - 4392~Predicted by: G%26G~Length: 327~SD Score: 588~CP: covers all CP~gap/overlap: overlap of 3~Longest ORF?: yes~Blast: 1:1 matches with all hits%2C top match Claudi%2C 99%25 query %26 100%25 identical coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_11 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_11 VIOLETTEMAD_12 VIOLETTEMAD_12 VIOLETTEMAD_12 4389 4511 - hypothetical protein SSC: 4389 - 4511~Predicted by: G%26G~Length: 123~SD Score: 441%2C not highest~CP: covers all CP~gap/overlap: overlap of 3~Longest ORF?: yes~Blast: 1:1 match with Claudi%2C 97%25 query %26 100%25 identical coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_12 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_12 VIOLETTEMAD_13 VIOLETTEMAD_13 VIOLETTEMAD_13 4508 4636 - hypothetical protein SSC: 4508 - 4636~Predicted by: G%26G~Length: 129~SD Score: 588%2C not highest~CP: covers all CP~gap/overlap: gap of 16~Longest ORF?: yes~Blast: 3 1:1 matches%2C top hit KonjoTrouble%2C 97%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_13 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_13 VIOLETTEMAD_14 VIOLETTEMAD_14 VIOLETTEMAD_14 4652 6724 - DNA polymerase SSC: 4652 - 6724~Predicted by: G%26G~Length: 2073~SD Score: 714%2C highest~CP: covers all CP~gap/overlap:~Longest ORF?: no~Blast: gap of 16~Function: DNA polymerase~Function Source: HHpred%2C multiple hits with e-value less than 10^-05%2C top hit has 100 probability and 3.2e-54 evalue gene gene-VIOLETTEMAD_14 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_14 VIOLETTEMAD_15 VIOLETTEMAD_15 VIOLETTEMAD_15 6740 7657 - terminal protein SSC: 6740 - 7657~Predicted by: G%26G~Length: 918~SD Score: 714%2C highest~CP: covers all CP~gap/overlap: gap of 40~Longest ORF?: yes~Blast: 3 1:1 hits%2C top match with KonjoTrouble%2C 99%25 query %26 100%25 identical coverage~Function: terminal protein~Function Source: blastp detects conserved domain%2C top hit evalue: 2.73e-17 gene gene-VIOLETTEMAD_15 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_15 VIOLETTEMAD_16 VIOLETTEMAD_16 VIOLETTEMAD_16 7697 7945 - hypothetical protein SSC: 7697 - 7945~Predicted by: G%26G~Length: 249~SD Score: 462%2C highest~CP: covers all CP~gap/overlap: gap of 86~Longest ORF?: no~Blast: 5 1:1 matches%2C top hit with Claudi%2C 98%25 query %26 100%25 identical coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_16 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_16 VIOLETTEMAD_17 VIOLETTEMAD_17 VIOLETTEMAD_17 8031 8387 - hypothetical protein SSC: 8031 - 8387~Predicted by: G%26G~Length: 357~SD Score: 441. not highest~CP: covers all CP~gap/overlap: gap of 13~Longest ORF?: yes~Blast: 3 1:1 matches%2C top hit with KonjoTrouble%2C 99%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_17 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_17 VIOLETTEMAD_18 VIOLETTEMAD_18 VIOLETTEMAD_18 8400 8549 - hypothetical protein SSC: 8400 - 8549~Predicted by: G%26G~Length: 150~SD Score: 609%2C highest~CP: covers all CP~gap/overlap: gap of 12~Longest ORF?: yes~Blast:1 1:1 match with Claudi%2C 98%25 query %26 100%25 identical coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_18 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_18 VIOLETTEMAD_19 VIOLETTEMAD_19 VIOLETTEMAD_19 8561 8722 - hypothetical protein SSC: 8561 - 8722~Predicted by: G%26G~Length: 162~SD Score: 588~CP: covers all CP~gap/overlap: gpa of 58~Longest ORF?: yes~Blast: 1 1:1 match with Claudi%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_19 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_19 VIOLETTEMAD_2 VIOLETTEMAD_2 VIOLETTEMAD_2 414 674 - hypothetical protein SSC: 414 - 674~Predicted by: G%26G~Length: 261~Longest ORF?: yes~Gap/Overlap: none~SD score: 588%2C highest~Blast: 7 1:1 matches%2C top hit with Claudi%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function source: N/A gene gene-VIOLETTEMAD_2 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_2 VIOLETTEMAD_20 VIOLETTEMAD_20 VIOLETTEMAD_20 8780 9151 - ssDNA binding protein SSC: 8780 - 9151~Predicted by: G%26G~Length: 372~SD Score: 286~CP: covers all CP~gap/overlap: gap of 866~Longest ORF?: yes~Blast: 3 1:1 matches%2C top match with KonjoTrouble%2C 99%25 query %26 100%25 identity coverage~Function: ssDNA-binding Protein~Function Source: HHpred%2C multiple hits with evalue less than 10^-05%2C top hit has 99.88 probability and 1.2e-23 evalue gene gene-VIOLETTEMAD_20 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_20 VIOLETTEMAD_21 VIOLETTEMAD_21 VIOLETTEMAD_21 10017 10232 - hypothetical protein SSC: 10017 - 10232~Predicted by: NI%2C original start was at 10223 but there were no 1:1 blast matches so I changed it to 10232~Length: 216~SD Score: 336%2C not highest~CP: covers all CP~gap/overlap: gap of 6~Longest ORF?: yes~Blast: 1:1 match with KonjoTrouble%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_21 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_21 VIOLETTEMAD_22 VIOLETTEMAD_22 VIOLETTEMAD_22 10238 10468 - hypothetical protein SSC: 10238 - 10468~Predicted by: G%26G~Length: 231~SD Score: 567%2C highest~CP: covers all CP~gap/overlap: gap of 13~Longest ORF?: yes~Blast: 1:1 match with KonjoTrouble only%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_22 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_22 VIOLETTEMAD_23 VIOLETTEMAD_23 VIOLETTEMAD_23 10481 10669 - hypothetical protein SSC: 10481 - 10669~Predicted by: NI%2C start was originally at 10639%2C but it didn't have any 1:1 blast matches so I changed it to 10669~Length: 189~SD Score: 357%2C not highest~gap/overlap: overlap of 7~CP: covers almost all CP~Longest ORF?: no~Blast: 1:1 match with KonjoTrouble%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_23 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_23 VIOLETTEMAD_24 VIOLETTEMAD_24 VIOLETTEMAD_24 10662 10808 - hypothetical protein SSC: 10662 - 10808~Predicted by: G%26G~Length: 147~SD Score: 567%2C highest~CP: covers all CP~gap/overlap: gap of 312~Longest ORF?: yes~Blast: 1:1 match with KonjoTrouble only%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_24 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_24 VIOLETTEMAD_25 VIOLETTEMAD_25 VIOLETTEMAD_25 11120 11200 - hypothetical protein TMHMM predicts this to be a transmembrane protein~No blastp results%2C HHpred has few orange hits (not significant) - but it is called by GeneMark~SSC: 11120 - 11200~Length: 81~SD score: 336~CP - covers most CP~longest ORF?: yes~gap/overlap: gap of 308 gene gene-VIOLETTEMAD_25 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_25 VIOLETTEMAD_26 VIOLETTEMAD_26 VIOLETTEMAD_26 11212 11292 - hypothetical protein Predicted by genemark~SD 609~No coding potential~No sig sim in Blastp gene gene-VIOLETTEMAD_26 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_26 VIOLETTEMAD_27 VIOLETTEMAD_27 VIOLETTEMAD_27 11308 11418 - hypothetical protein Predicted by genemark~SD 609~Covers coding potential~No sig sim in Blastp gene gene-VIOLETTEMAD_27 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_27 VIOLETTEMAD_28 VIOLETTEMAD_28 VIOLETTEMAD_28 11508 11615 - hypothetical protein NI inserted this bc it was predicted by GeneMark and has one blast match to Claudi~SSC: 11508 - 11615~Predicted by: G%26G~Length: 108~SD Score: 399%2C not highest~gap/overlap: 26~CP: covers all CP~Longest ORF?: yes~Blast: no 1:1 matches%2C only existing match with Claudi%2C 97%25 query %26 100%25 identity match~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_28 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_28 VIOLETTEMAD_29 VIOLETTEMAD_29 VIOLETTEMAD_29 11641 11778 - hypothetical protein SSC: 11641 - 11778~Predicted by: G%26G~Length: 138~SD Score: 609%2C highest~CP: covers all CP~gap/overlap: gap of 89~Longest ORF?: yes~Blast: 1:1 match with Claudi and 2 others%2C 98%25 query %26 100%25 identical coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_29 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_29 VIOLETTEMAD_3 VIOLETTEMAD_3 VIOLETTEMAD_3 671 1021 - hypothetical protein SSC: 671 - 1021~Predicted by: G%26G~Length: 351~Longest ORF?: no~gap/overlap: none~SD score: 399. not highest~Blast: 1 1:1 match%2C top hit with Claudi%2C 99%25 query %26 100%25 identity coverage~Function: N/A~Function source: N/A~Note: blastp does detect a conserved domain but it is a 'protein of unknown function' gene gene-VIOLETTEMAD_3 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_3 VIOLETTEMAD_30 VIOLETTEMAD_30 VIOLETTEMAD_30 11867 12175 - dsDNA binding protein SSC: 11867 - 12175~Predicted by: G%26G~Length: 309~SD Score: 588~CP: covers all CP~Longest ORF?: yes~gap/overlap: gap of 574~Blast: 8 1:1 matches%2C top hit with KonjoTrouble%2C 98%25 query %26 100%25 identity coverage~Function: ds-DNA binding protein~Function Source: blastp detected conserved domain%2C e-value: 2.36e-05 gene gene-VIOLETTEMAD_30 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_30 VIOLETTEMAD_31 VIOLETTEMAD_31 VIOLETTEMAD_31 12749 13051 + scaffold protein SSC: 12749 - 13051~Predicted by: G%26G~Length: 303~SD Score: 399~CP: covers all CP~gap/overlap: gap of 574~Longest ORF?: no~Blast: 1:1 match with KonjoTrouble and 7 others%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A~*originally had 'scaffold protein' as function but I didn't see any signficant HHpred %26 blastp results so I changed it to hypothetical gene gene-VIOLETTEMAD_31 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_31 VIOLETTEMAD_32 VIOLETTEMAD_32 VIOLETTEMAD_32 13110 14438 + major capsid protein SSC: 13110 - 14438~Predicted by: G%26G~Length: 1329~SD Score: 441%2C not highest~CP: covers all CP~gap/overlap: gap of 51~Longest ORF?: yes~Blast: 1:1 match with Stitch and 4 others%2C 99%25 query %26 100%25 identity coverage~Function: major head protein~Function Source: blastp detected a conserved domain%2C evalue: 1.83e-140 gene gene-VIOLETTEMAD_32 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_32 VIOLETTEMAD_33 VIOLETTEMAD_33 VIOLETTEMAD_33 14728 16497 + major tail protein SSC: 14728 - 16497~Predicted by: G%26G~Length: 1770~SD Score: 546~CP: covers all CP~Longest ORF?: yes~gap/overlap: gap of 290~Blast: 1:1 match with KonjoTrouble and 8 others%2C 99%25 query %26 100%25 identity coverage~Function: tail protein~Function Source: blastp detects conserved domain%2C e-value: 0~S. Caruso knows this functional annotation%2C so AJ added 'knob'. gene gene-VIOLETTEMAD_33 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_33 VIOLETTEMAD_34 VIOLETTEMAD_34 VIOLETTEMAD_34 16500 17453 + upper collar protein SSC: 16500 - 17453~Predicted by: G%26G~Length: 954~SD Score: 798%2C highest~CP: covers all CP~Longest ORF?: yes~gap/overlap: gap of 3~Blast: 1:1 match with KonjoTrouble and one other%2C 99%25 query %26 100%25 identity coverage~Function: upper collar protein~Function Source: blastp detects a conserved domain%2C evalue: 5.16e-88 gene gene-VIOLETTEMAD_34 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_34 VIOLETTEMAD_35 VIOLETTEMAD_35 VIOLETTEMAD_35 17440 18507 + lower collar protein SSC: 17440 - 18507~Predicted by: G%26G~Length: 1068~SD Score: 525~CP: covers all CP~Longest ORF?: yes~gap/overlap: overlap of 13~Blast: 1:1 match with KonjoTrouble and 6 others%2C 99%25 query %26 100%25 identity coverage~Function: lower collar protein~Function Source: blastp detects a conserved domain%2C e-value: 3.65e-42 gene gene-VIOLETTEMAD_35 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_35 VIOLETTEMAD_36 VIOLETTEMAD_36 VIOLETTEMAD_36 18522 20675 + pre-neck appendage protein SSC: 18522 - 20675~Predicted by: NI%2C original start was at 18600 but the blast matches weren't 1:1%2C changed start to 18522~Length: 2154~SD Score: 567~CP: covers almost all CP~gap/overlap: none~Longest ORF?: yes~Blast: 1:1 match with KonjoTrouble only%2C 99%25 query %26 100%25 identical coverage~Function: pre-neck appendage protein~Function Source: HHpred - multiple hits with evalue under 10^-05%2C top hit has 99.91 probablity %26 evalue 5.3e-24 gene gene-VIOLETTEMAD_36 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_36 VIOLETTEMAD_37 VIOLETTEMAD_37 VIOLETTEMAD_37 20675 21913 + morphogenesis protein SSC: 20675 - 21913~Predicted by: G%26G~Length: 1239~SD Score: 525%2C not highest~CP: covers all CP~Longest ORF?: yes~gap/overlap: none~Blast: 1:1 match with KonjoTrouble and 4 others%2C 99%25 query %26 100%25 identity coverage~Function: lytic transglycosylace~Function Source: blastp detects conserved domain%2C e-value: 4.43e-60 gene gene-VIOLETTEMAD_37 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_37 VIOLETTEMAD_38 VIOLETTEMAD_38 VIOLETTEMAD_38 21948 22097 + holin SSC: 21948 - 22097~Predicted by: G%26G~Length: 150~SD Score: 504~CP: covers all CP~gap/overlap: gap of 2~Longest ORF?: yes~Blast: 1:1 match with Claudi only%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A~Contains one predicted transmembrane helix%2C amino acids 7-29.~CDD 10^-3 hit to YvrJ family protein from Bacillus sp.~93%25 probability match to Holin BhlA in pfam.~The Phage_holin_BhlA family is a family of holin-like proteins from both bacteriophages and bacterial chromosomes. In bacteriophage%2C holins are small membrane proteins that accumulate and oligomerise to form non-specific lesions in the cytoplasmic membrane allowing the release of the second protein%2C endolysins%2C to access the peptidoglycan. Most holins share common structural features: two or three transmembrane domains separated by a beta-turn%2C a short hydrophilic N-terminus%2C a highly charged C-terminus and a dual translational start motif. The BhlA holin of Bacillus is found to be toxic to the host cell where the site of action of is on the cell membrane and causes bacterial death by cell membrane disruption gene gene-VIOLETTEMAD_38 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_38 VIOLETTEMAD_39 VIOLETTEMAD_39 VIOLETTEMAD_39 22099 22896 + endolysin SSC: 22099 - 22896~Predicted by: G%26G~Length: 798~SD Score: 714~CP: covers all CP~gap/overlap: gap of 2~Longest ORF?: yes~Blast: 1:1 match with KonjoTrouble %26 8 others - 99%25 query %26 100%25 identity coverage~Function: endolysin~Function Source: HHpred - multiple hits with e-value less than 10^-05%2C top hit has probability 100%25 %26 1.3e-37 evalue gene gene-VIOLETTEMAD_39 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_39 VIOLETTEMAD_4 VIOLETTEMAD_4 VIOLETTEMAD_4 1021 1518 - dUTPase SSC: 1021 - 1518~Predicted by: G%26G~Length: 498~Longest ORF?: yes~gap/overlap: overlap of 3~SD score: 777%2C highest~Blast: 3 1:1 matches%2C top hit with Claudi%2C 99%25 query %26 100%25 identity coverage~Function: dUTPase~Function source: HHpred%2C multiple hits with value less than 10^-05%2C top hit has 99.92 probability and evalue of 2.7e-27 gene gene-VIOLETTEMAD_4 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_4 VIOLETTEMAD_40 VIOLETTEMAD_40 VIOLETTEMAD_40 23107 24207 + ATPase encapsidation protein SSC: 23107 - 24207~Predicted by: G%26G~Length: 1101~SD Score: 567~CP: covers all CP~gap/overlap: gap of 80~Longest ORF?: no~Blast: 1:1 match with KonjoTrouble and 7 others%2C 99%25 query %26 100%25 identity coverage~Function: ATPase encapsidation protein~Function Source: blastp detects conserved domain%2C evalue - 9.4e-135 gene gene-VIOLETTEMAD_40 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_40 VIOLETTEMAD_41 VIOLETTEMAD_41 VIOLETTEMAD_41 24272 24418 - hypothetical protein SSC: 24272 - 24418~Predicted by: G%26G~Length: 147~SD Score: 756~CP: covers all CP~gap/overlap: overlap of 3~Longest ORF?: yes~Blast: 1:1 match with KonjoTrouble and 1 other%2C 97%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_41 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_41 VIOLETTEMAD_42 VIOLETTEMAD_42 VIOLETTEMAD_42 24415 24600 - hypothetical protein SSC: 24415 - 24600~Predicted by: G%26G~Length: 186~SD Score: 546~CP: covers almost all CP~gap/overlap: gap of 2~Longest ORF?: no~Blast: 1:1 match with QCM11 and one other%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_42 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_42 VIOLETTEMAD_43 VIOLETTEMAD_43 VIOLETTEMAD_43 24602 24895 - hypothetical protein SSC: 24602 - 24895~Predicted by: G%26G~Length: 294~SD Score: 609~CP: covers all CP~gap/overlap: none~Longest ORF?: no~Blast: 1:1 match with KonjoTrouble %26 6 others%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_43 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_43 VIOLETTEMAD_44 VIOLETTEMAD_44 VIOLETTEMAD_44 24895 25038 - hypothetical protein SSC: 24895 - 25038~Predicted by: G%26G~Length: 144~SD Score: 483~CP: covers all CP~gap/overlap: gap of 3~Longest ORF?: no~Blast: 1:1 match with KonjoTrouble %26 one other%2C 97%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_44 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_44 VIOLETTEMAD_45 VIOLETTEMAD_45 VIOLETTEMAD_45 25041 25328 - hypothetical protein SSC: 25041 - 25328~Predicted by: G%26G~Length: 288~SD Score: 504~CP: covers all CP~gap/overlap: gap of 1~Longest ORF?:yes~Blast: 1:1 match with KonjoTrouble %26 6 others%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_45 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_45 VIOLETTEMAD_46 VIOLETTEMAD_46 VIOLETTEMAD_46 25329 25763 - early protein SSC: 25329 - 25763~Predicted by: G%26G~Length: 435~SD Score: 504~CP: covers all CP~gap/overlap: N/A~Longest ORF?: yes~Blast: 1:1 match with KonjoTrouble %26 4 others%2C 99%25 query %26 100%25 identical coverage~Function: early protein~Function Source: HHpred%2C one significant hit%2C probability 100 %26 7.7e-35 gene gene-VIOLETTEMAD_46 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_46 VIOLETTEMAD_5 VIOLETTEMAD_5 VIOLETTEMAD_5 1515 1793 - glutaredoxin SSC: 1515 - 1793~Length: 279~Predicted by: G%26G~Longest ORF?: no~Gap/Overlap: gap of 2~SD score: 546%2C highest~Blast: 2 1:1 matches%2C 98%25 query and 100%25 identity coverage%2C top match with Claudi~Function: glutaredoxin~Function Source: HHpred%2C multiple hits with evalue less than 10^-05%2C top hit having 99.18 probability and 2.7e-13 evalue gene gene-VIOLETTEMAD_5 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_5 VIOLETTEMAD_6 VIOLETTEMAD_6 VIOLETTEMAD_6 1795 2265 - hypothetical protein SSC: 1795 - 2265~Length: 471~Predicted by: G%26G~Gap/Overlap: gap of 12~Longest ORF?: yes~SD score: 399%2C not highest~Blast: 3 1:1 matches%2C top match with KonjoTrouble%2C 99%25 query and 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_6 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_6 VIOLETTEMAD_7 VIOLETTEMAD_7 VIOLETTEMAD_7 2277 2948 - hypothetical protein SSC: 2277 - 2948~Predicted by: G%26G~Length: 672~SD Score: 819%2C highest~gap/overlap: 135~CP: covers all CP~Longest ORF?: yes~Blast: 1 1:1 match with KonjoTrouble%2C 99%25 query %26 100%25 identical coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_7 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_7 VIOLETTEMAD_8 VIOLETTEMAD_8 VIOLETTEMAD_8 3083 3679 - hypothetical protein SSC: 3083 - 3679~Predicted by: G%26G~Length: 597~SD Score: 882%2C highest~gap/overlap: 97~CP: covers all CP~Longest ORF?: yes~Blast: 7 1:1 matches%2C top match with KonjoTrouble%2C 99%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_8 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_8 VIOLETTEMAD_9 VIOLETTEMAD_9 VIOLETTEMAD_9 3776 3925 - hypothetical protein SSC: 3776 - 3925~Predicted by: G%26G~Length: 150~SD Score: 357%2C not highest~CP: covers all CP~gap/overlap: overlap of 3~Longest ORF?: yes~Blast: 3 1:1 matches%2C top hit with KonjoTrouble%2C 98%25 query %26 100%25 identity coverage~Function: N/A~Function Source: N/A gene gene-VIOLETTEMAD_9 http://www.ncbi.nlm.nih.gov/gene/?term=VIOLETTEMAD_9