locus-tag	class	description
phi3T_109	COG3646	Phage regulatory protein
phi3T_109	COG3645	SOS response
phi3T_113	COG4474	Belongs to the UPF0398 family
phi3T_12	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
phi3T_123	COG1793	dna ligase
phi3T_124	COG2135	peptidase activity
phi3T_136	COG2887	Belongs to the helicase family. UvrD subfamily
phi3T_138	COG0305	Participates in initiation and elongation during chromosome replication
phi3T_139	COG0358	DNA primase activity
phi3T_14	COG0457	Tetratricopeptide repeat
phi3T_140	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
phi3T_141	COG0587	DNA-directed DNA polymerase activity
phi3T_142	COG3584	3D domain protein
phi3T_147	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
phi3T_148	COG4502	5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
phi3T_150	COG0270	DNA (cytosine-5-)-methyltransferase activity
phi3T_166	COG1780	Probably involved in ribonucleotide reductase function
phi3T_167	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
phi3T_167	COG1372	Participates in initiation and elongation during chromosome replication
phi3T_169	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
phi3T_17	COG5632	N-Acetylmuramoyl-L-alanine amidase
phi3T_171	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
phi3T_172	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
phi3T_173	COG0756	dUTP diphosphatase activity
phi3T_174	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
phi3T_199	COG3331	DNA recombination
phi3T_20	COG4632	Exopolysaccharide biosynthesis protein
phi3T_20	COG5434	Belongs to the glycosyl hydrolase 28 family
phi3T_22	COG2433	Pfam Transposase IS66
phi3T_24	COG1196	nuclear chromosome segregation
phi3T_24	COG0741	lytic transglycosylase activity
phi3T_24	COG0739	heme binding
phi3T_26	COG2801	Transposase and inactivated derivatives
phi3T_29	COG0582	viral genome integration into host DNA
phi3T_3	COG1525	nuclease
phi3T_49	COG4373	Mu-like prophage FluMu protein gp28
phi3T_5	COG5444	nuclease activity
phi3T_58	COG0776	regulation of translation
phi3T_73	COG0210	DNA helicase
phi3T_79	COG3655	Transcriptional regulator
phi3T_95	COG0582	viral genome integration into host DNA
phi3T_98	COG3655	Transcriptional regulator