locus_tag old_locus_tag gene Name start end strand product note type ID NCBI XO29_0001 XO29_0001 terS terS 1 915 + terminase small subunit identified by match to protein family HMM PF03592 gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0001 XO29_0002 XO29_0002 terL terL 905 2179 + PBSX family terminase large subunit identified by match to protein family HMM PF03237%3B match to protein family HMM TIGR01547 gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0002 XO29_0003 XO29_0003 XO29_0003 2192 3625 + portal protein identified by match to protein family HMM PF05133%3B match to protein family HMM TIGR01538%3B phage portal protein%2C SPP1 family gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0003 XO29_0004 XO29_0004 XO29_0004 3549 4466 + hypothetical protein identified by match to protein family HMM PF04233%3B phage Mu protein F-like protein gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0004 XO29_0005 XO29_0005 XO29_0005 4445 4738 + hypothetical protein gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0005 XO29_0006 XO29_0006 XO29_0006 4818 5498 + scaffold protein gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0006 XO29_0007 XO29_0007 XO29_0007 5516 6358 + major capsid protein gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0007 XO29_0008 XO29_0008 XO29_0008 6409 6717 + hypothetical protein identified by glimmer%3B putative gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0008 XO29_0009 XO29_0009 XO29_0009 6714 7058 + head-tail adaptor identified by match to protein family HMM TIGR01563 gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0009 XO29_0010 XO29_0010 XO29_0010 7033 7440 + protein of unknown function DUF646 gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0010 XO29_0011 XO29_0011 XO29_0011 7446 7808 + hypothetical protein gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0011 XO29_0012 XO29_0012 XO29_0012 7823 8416 + hypothetical protein gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0012 XO29_0013 XO29_0013 XO29_0013 8463 8891 + hypothetical protein identified by glimmer%3B putative gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0013 XO29_0014 XO29_0014 XO29_0014 8927 9202 + hypothetical protein gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0014 XO29_0015 XO29_0015 tmp tmp 9203 12142 + tail tape measure protein identified by match to protein family HMM TIGR01760%3B tail tape measure protein%2C TP901 family%2C core region gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0015 XO29_0016 XO29_0016 dit dit 12155 13633 + distal tail protein identified by match to protein family HMM TIGR01633%2C which contains the dit protein (orf49) of Lactococcus phage Tuc2009 as part of the seed of this model gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0016 XO29_0017 XO29_0017 tal tal 13630 18339 + tail fiber predicted antireceptor%3B identified by match to protein family HMM TIGR01665 gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0017 XO29_0018 XO29_0018 XO29_0018 18430 19398 + site-specific recombinase identified by match to protein family HMM PF00589%3B site-specific recombinase%2C phage integrase family protein gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0018 XO29_0019 XO29_0019 XO29_0019 19414 19653 + hypothetical protein gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0019 XO29_0020 XO29_0020 hol hol 19696 19926 + holin identified by match to protein family HMM TIGR01592%3B holin%2C SPP1 family gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0020 XO29_0021 XO29_0021 lys lys 19943 20878 + N-acetylmuramoyl-L-alanine amidase identified by match to protein family HMM PF01510%3B match to protein family HMM PF08239 gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0021 XO29_0022 XO29_0022 XO29_0022 20962 21141 + hypothetical protein gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0022 XO29_0023 XO29_0023 XO29_0023 21173 21457 - hypothetical protein identified by glimmer%3B putative gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0023 XO29_0024 XO29_0024 XO29_0024 21529 21663 - hypothetical protein identified by glimmer%3B putative gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0024 XO29_0025 XO29_0025 XO29_0025 21892 22125 - DNA-binding helix-turn-helix protein identified by match to protein family HMM PF01381 gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0025 XO29_0026 XO29_0026 XO29_0026 22211 22816 - hypothetical protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0026 XO29_0027 XO29_0027 XO29_0027 22753 23157 - hypothetical protein gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0027 XO29_0028 XO29_0028 XO29_0028 23251 23577 - hypothetical protein gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0028 XO29_0029 XO29_0029 XO29_0029 23543 24574 - StbA protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0029 XO29_0030 XO29_0030 XO29_0030 24857 25519 - hypothetical protein identified by glimmer%3B putative gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0030 XO29_0031 XO29_0031 XO29_0031 25543 26754 - replication initiator protein A identified by match to protein family HMM PF06970%3B match to protein family HMM TIGR01446%3B replication initiator protein A%2C N-terminal gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0031 XO29_0032 XO29_0032 XO29_0032 26876 27076 - hypothetical protein gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0032 XO29_0033 XO29_0033 XO29_0033 27246 27590 - hypothetical protein gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0033 XO29_0034 XO29_0034 XO29_0034 27610 28137 - telomeric repeat-binding factor 2 gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0034 XO29_0035 XO29_0035 XO29_0035 28198 28332 - hypothetical protein identified by glimmer%3B putative gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0035 XO29_0036 XO29_0036 XO29_0036 28352 28477 - hypothetical protein identified by glimmer%3B putative gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0036 XO29_0037 XO29_0037 XO29_0037 28748 29065 - DNA-binding helix-turn-helix protein identified by match to protein family HMM PF01381 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0037 XO29_0038 XO29_0038 XO29_0038 29269 29547 + hypothetical protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0038 XO29_0039 XO29_0039 XO29_0039 29630 30817 + DNA-binding helix-turn-helix protein gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0039 XO29_0040 XO29_0040 XO29_0040 30864 31010 + hypothetical protein gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0040 XO29_0041 XO29_0041 XO29_0041 31117 31299 + hypothetical protein gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0041 XO29_0042 XO29_0042 XO29_0042 31305 31655 - DNA-binding helix-turn-helix protein identified by match to protein family HMM PF01381 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0042 XO29_0043 XO29_0043 XO29_0043 31869 32066 + DNA-binding helix-turn-helix protein identified by match to protein family HMM PF01381 gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0043 XO29_0044 XO29_0044 XO29_0044 32133 32861 + Rha family regulatory protein identified by match to protein family HMM TIGR02681%3B phage regulatory protein%2C Rha family gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0044 XO29_0045 XO29_0045 XO29_0045 32873 33247 + hypothetical protein gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0045 XO29_0046 XO29_0046 XO29_0046 33271 33978 + hypothetical protein gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0046 XO29_0047 XO29_0047 XO29_0047 33978 34157 + hypothetical protein identified by glimmer%3B putative gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0047 XO29_0048 XO29_0048 XO29_0048 34147 34476 + hypothetical protein gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0048 XO29_0049 XO29_0049 XO29_0049 34622 35125 + hypothetical protein gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0049 XO29_0050 XO29_0050 XO29_0050 35085 35477 + hypothetical protein gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0050 XO29_0051 XO29_0051 XO29_0051 35497 35853 + hypothetical protein gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0051 XO29_0052 XO29_0052 XO29_0052 35877 36344 + hypothetical protein gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0052 XO29_0053 XO29_0053 XO29_0053 36458 36895 + hypothetical protein gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0053 XO29_0054 XO29_0054 XO29_0054 36895 37347 + hypothetical protein gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0054 XO29_0055 XO29_0055 XO29_0055 37344 37925 + dUTPase identified by match to protein family HMM PF08761 gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0055 XO29_0056 XO29_0056 XO29_0056 37947 38429 + hypothetical protein gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0056 XO29_0057 XO29_0057 XO29_0057 38467 38559 + hypothetical protein identified by glimmer%3B putative gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0057 XO29_0058 XO29_0058 XO29_0058 38563 38862 + hypothetical protein gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0058 XO29_0059 XO29_0059 XO29_0059 38900 39097 + hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0059 XO29_0060 XO29_0060 XO29_0060 39091 39498 + hypothetical protein gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0060 XO29_0061 XO29_0061 XO29_0061 39508 39696 + hypothetical protein identified by glimmer%3B putative gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0061 XO29_0062 XO29_0062 XO29_0062 39770 39934 + hypothetical protein identified by glimmer%3B putative gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0062 XO29_0063 XO29_0063 XO29_0063 40100 40270 + hypothetical protein identified by glimmer%3B putative gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0063 XO29_0064 XO29_0064 XO29_0064 40396 40620 + hypothetical protein gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0064 XO29_0065 XO29_0065 XO29_0065 40662 41039 + hypothetical protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0065 XO29_0066 XO29_0066 XO29_0066 41164 41346 + hypothetical protein gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0066 XO29_0067 XO29_0067 XO29_0067 41377 41907 + recombination protein U identified by match to protein family HMM PF03838 gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0067 XO29_0068 XO29_0068 XO29_0068 41927 42250 + hypothetical protein gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0068 XO29_0069 XO29_0069 XO29_0069 42395 42895 + positive control sigma-like factor identified by match to protein family HMM PF08281%3B match to protein family HMM TIGR02937 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0069 XO29_0070 XO29_0070 XO29_0070 43080 43280 - hypothetical protein identified by glimmer%3B putative gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0070 XO29_0071 XO29_0071 XO29_0071 43482 43658 + hypothetical protein identified by glimmer%3B putative gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0071 XO29_0072 XO29_0072 XO29_0072 43788 44030 + hypothetical protein gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0072 XO29_0073 XO29_0073 XO29_0073 44023 44289 + hypothetical protein gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0073 XO29_0074 XO29_0074 XO29_0074 44428 44670 + hypothetical protein gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0074 XO29_0075 XO29_0075 XO29_0075 44670 44933 + hypothetical protein gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0075 XO29_0076 XO29_0076 XO29_0076 45193 45513 + hypothetical protein gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0076 XO29_0077 XO29_0077 XO29_0077 45547 45924 + hypothetical protein identified by glimmer%3B putative gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0077 XO29_0078 XO29_0078 XO29_0078 45957 46286 + hypothetical protein gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0078 XO29_0079 XO29_0079 XO29_0079 46273 46485 + hypothetical protein identified by glimmer%3B putative gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=XO29_0079