ID12_00010 PF09515 Thiamine transporter protein (Thia_YuaJ) ID12_00015 PF00583 Acetyltransferase (GNAT) family ID12_00020 PF01381 Helix-turn-helix ID12_00020 PF06803 ID12_00020 ID12_00025 PF01098 ID12_00025 ID12_00030 PF01098 ID12_00030 ID12_00035 PF01145 SPFH domain / Band 7 family ID12_00035 PF15975 ID12_00035 ID12_00045 PF12867 DinB superfamily ID12_00050 PF00465 Iron-containing alcohol dehydrogenase ID12_00055 PF00171 Aldehyde dehydrogenase family ID12_00075 PF01471 Putative peptidoglycan binding domain ID12_00075 PF01510 N-acetylmuramoyl-L-alanine amidase ID12_00080 PF04688 ID12_00080 ID12_00085 PF10960 ID12_00085 ID12_00115 PF09636 XkdW protein ID12_00125 PF12571 ID12_00125 ID12_00130 PF10076 ID12_00130 ID12_00135 PF04865 ID12_00135 ID12_00140 PF10934 ID12_00140 ID12_00145 PF10844 ID12_00145 ID12_00155 PF01476 LysM domain ID12_00160 PF01464 Transglycosylase SLT domain ID12_00170 PF08890 Phage XkdN-like protein ID12_00180 PF09393 Protein of unknown function (DUF2001) ID12_00185 PF04984 Phage tail sheath protein ID12_00185 PF17481 ID12_00185 ID12_00185 PF17482 ID12_00185 ID12_00200 PF04883 ID12_00200 ID12_00205 PF12206 Domain of unknown function (DUF3599) ID12_00210 PF11436 Protein of unknown function (DUF3199) ID12_00215 PF05065 Phage capsid family ID12_00220 PF14550 ID12_00220 ID12_00225 PF04860 Phage portal protein ID12_00230 PF04466 Phage terminase large subunit ID12_00230 PF17288 ID12_00230 ID12_00235 PF13384 Homeodomain-like domain ID12_00240 PF08281 Sigma-70, region 4 ID12_00245 PF17356 ID12_00245 ID12_00270 PF01381 Helix-turn-helix ID12_00275 PF01381 Helix-turn-helix ID12_00290 PF04055 Radical SAM superfamily ID12_00290 PF06968 Biotin and Thiamin Synthesis associated domain ID12_00300 PF02673 ID12_00300 ID12_00305 PF01594 ID12_00305 ID12_00310 PF13564 ID12_00310 ID12_00315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ID12_00320 PF01965 DJ-1/PfpI family ID12_00325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_00325 PF00672 HAMP domain ID12_00325 PF02743 Cache domain ID12_00330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_00330 PF00672 HAMP domain ID12_00330 PF02743 Cache domain ID12_00335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_00335 PF00672 HAMP domain ID12_00335 PF02743 Cache domain ID12_00340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_00340 PF00672 HAMP domain ID12_00340 PF02743 Cache domain ID12_00355 PF03060 Nitronate monooxygenase ID12_00360 PF01894 Uncharacterised protein family UPF0047 ID12_00365 PF00571 CBS domain ID12_00365 PF01595 ID12_00365 ID12_00365 PF03471 Transporter associated domain ID12_00370 PF04298 ID12_00370 ID12_00380 PF02254 TrkA-N domain ID12_00380 PF07885 Ion channel ID12_00385 PF08868 YugN-like family ID12_00390 PF10676 ID12_00390 ID12_00395 PF00342 Phosphoglucose isomerase ID12_00400 PF00465 Iron-containing alcohol dehydrogenase ID12_00405 PF00465 Iron-containing alcohol dehydrogenase ID12_00410 PF04070 ID12_00410 ID12_00415 PF00575 S1 RNA binding domain ID12_00420 PF00155 Aminotransferase class I and II ID12_00425 PF01037 AsnC family ID12_00430 PF00561 alpha/beta hydrolase fold ID12_00435 PF08958 Domain of unknown function (DUF1871) ID12_00440 PF00155 Aminotransferase class I and II ID12_00445 PF00512 His Kinase A (phospho-acceptor) domain ID12_00445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_00445 PF07694 5TMR of 5TMR-LYT ID12_00455 PF08810 Kinase associated protein B ID12_00460 PF00929 Exonuclease ID12_00465 PF00083 Sugar (and other) transporter ID12_00465 PF07690 Major Facilitator Superfamily ID12_00470 PF00905 Penicillin binding protein transpeptidase domain ID12_00470 PF00912 Transglycosylase ID12_00475 PF04134 ID12_00475 ID12_00480 PF17328 ID12_00480 ID12_00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_00485 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ID12_00485 PF17203 ID12_00485 ID12_00490 PF00072 Response regulator receiver domain ID12_00495 PF02608 Basic membrane protein ID12_00500 PF00005 ABC transporter ID12_00505 PF02653 ID12_00505 ID12_00510 PF02653 ID12_00510 ID12_00515 PF03390 ID12_00515 ID12_00530 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ID12_00530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ID12_00530 PF13244 ID12_00530 ID12_00535 PF04039 ID12_00535 ID12_00540 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ID12_00545 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains ID12_00550 PF01899 ID12_00550 ID12_00555 PF04066 ID12_00555 ID12_00560 PF03334 ID12_00560 ID12_00565 PF03061 Thioesterase superfamily ID12_00570 PF00072 Response regulator receiver domain ID12_00570 PF00196 Bacterial regulatory proteins, luxR family ID12_00575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_00575 PF07730 Histidine kinase ID12_00580 PF05952 ID12_00580 ID12_00585 PF00348 Polyprenyl synthetase ID12_00590 PF08181 ID12_00590 ID12_00600 PF00563 EAL domain ID12_00600 PF08668 HDOD domain ID12_00605 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ID12_00610 PF00857 Isochorismatase family ID12_00615 PF07997 Protein of unknown function (DUF1694) ID12_00620 PF14166 ID12_00620 ID12_00625 PF10676 ID12_00625 ID12_00630 PF10676 ID12_00630 ID12_00635 PF01594 ID12_00635 ID12_00640 PF10842 ID12_00640 ID12_00645 PF07819 PGAP1-like protein ID12_00650 PF01966 HD domain ID12_00655 PF00106 short chain dehydrogenase ID12_00660 PF17355 ID12_00660 ID12_00665 PF12698 ABC-2 family transporter protein ID12_00670 PF01580 FtsK/SpoIIIE family ID12_00670 PF12538 DNA transporter ID12_00675 PF10140 WXG100 protein secretion system (Wss), protein YukC ID12_00680 PF08817 WXG100 protein secretion system (Wss), protein YukD ID12_00685 PF06013 Proteins of 100 residues with WXG ID12_00690 PF13556 PucR C-terminal helix-turn-helix domain ID12_00695 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ID12_00695 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ID12_00700 PF02632 BioY family ID12_00705 PF03553 ID12_00705 ID12_00705 PF13726 ID12_00705 ID12_00710 PF00883 Cytosol aminopeptidase family, catalytic domain ID12_00710 PF02789 Cytosol aminopeptidase family, N-terminal domain ID12_00715 PF02681 ID12_00715 ID12_00720 PF06725 3D domain ID12_00725 PF14068 ID12_00725 ID12_00735 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_00740 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_00755 PF01521 Iron-sulphur cluster biosynthesis ID12_00760 PF01678 Diaminopimelate epimerase ID12_00765 PF07293 ID12_00765 ID12_00770 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_00780 PF07315 Protein of unknown function (DUF1462) ID12_00785 PF01106 NifU-like domain ID12_00790 PF00326 Prolyl oligopeptidase family ID12_00790 PF07676 WD40-like Beta Propeller Repeat ID12_00795 PF00288 GHMP kinases N terminal domain ID12_00795 PF08544 GHMP kinases C terminal ID12_00800 PF00291 Pyridoxal-phosphate dependent enzyme ID12_00805 PF00742 Homoserine dehydrogenase ID12_00805 PF01842 ACT domain ID12_00805 PF03447 Homoserine dehydrogenase, NAD binding domain ID12_00810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ID12_00810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ID12_00820 PF04608 Phosphatidylglycerophosphatase A ID12_00825 PF13242 HAD-hyrolase-like ID12_00825 PF13344 Haloacid dehalogenase-like hydrolase ID12_00830 PF01934 Protein of unknown function DUF86 ID12_00835 PF06265 Protein of unknown function (DUF1027) ID12_00840 PF09580 ID12_00840 ID12_00845 PF04055 Radical SAM superfamily ID12_00845 PF16881 ID12_00845 ID12_00850 PF01551 Peptidase family M23 ID12_00860 PF10903 ID12_00860 ID12_00865 PF09560 ID12_00865 ID12_00870 PF08827 Domain of unknown function (DUF1805) ID12_00875 PF00149 Calcineurin-like phosphoesterase ID12_00875 PF02872 5'-nucleotidase, C-terminal domain ID12_00880 PF01904 Protein of unknown function DUF72 ID12_00885 PF13556 PucR C-terminal helix-turn-helix domain ID12_00890 PF00190 Cupin ID12_00895 PF07690 Major Facilitator Superfamily ID12_00900 PF00266 Aminotransferase class-V ID12_00905 PF04231 Endonuclease I ID12_00915 PF06276 Ferric iron reductase FhuF-like transporter ID12_00915 PF11575 ID12_00915 ID12_00920 PF01032 FecCD transport family ID12_00925 PF01032 FecCD transport family ID12_00930 PF01497 Periplasmic binding protein ID12_00935 PF12146 Putative lysophospholipase ID12_00940 PF07859 alpha/beta hydrolase fold ID12_00945 PF06146 ID12_00945 ID12_00950 PF00512 His Kinase A (phospho-acceptor) domain ID12_00955 PF00072 Response regulator receiver domain ID12_00955 PF00486 Transcriptional regulatory protein, C terminal ID12_00960 PF04235 ID12_00960 ID12_00965 PF08279 HTH domain ID12_00965 PF13280 ID12_00965 ID12_00970 PF02525 Flavodoxin-like fold ID12_00975 PF02384 N-6 DNA Methylase ID12_00975 PF12161 HsdM N-terminal domain ID12_00980 PF01420 Type I restriction modification DNA specificity domain ID12_00990 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ID12_00990 PF04851 Type III restriction enzyme, res subunit ID12_00990 PF12008 Type I restriction and modification enzyme - subunit R C terminal ID12_00995 PF01420 Type I restriction modification DNA specificity domain ID12_01000 PF01458 Uncharacterized protein family (UPF0051) ID12_01005 PF01592 NifU-like N terminal domain ID12_01010 PF00266 Aminotransferase class-V ID12_01015 PF01458 Uncharacterized protein family (UPF0051) ID12_01020 PF00005 ABC transporter ID12_01030 PF02627 Carboxymuconolactone decarboxylase family ID12_01035 PF03180 NLPA lipoprotein ID12_01040 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01045 PF00005 ABC transporter ID12_01045 PF09383 NIL domain ID12_01050 PF02036 SCP-2 sterol transfer family ID12_01055 PF00085 Thioredoxin ID12_01065 PF10830 ID12_01065 ID12_01070 PF01597 Glycine cleavage H-protein ID12_01075 PF03960 ArsC family ID12_01080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ID12_01080 PF02770 Acyl-CoA dehydrogenase, middle domain ID12_01080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ID12_01085 PF00108 Thiolase, N-terminal domain ID12_01085 PF02803 Thiolase, C-terminal domain ID12_01090 PF00378 Enoyl-CoA hydratase/isomerase family ID12_01090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ID12_01090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ID12_01105 PF07875 ID12_01105 ID12_01110 PF10835 ID12_01110 ID12_01115 PF00005 ABC transporter ID12_01120 PF14039 ID12_01120 ID12_01125 PF00106 short chain dehydrogenase ID12_01130 PF13180 PDZ domain ID12_01130 PF13365 Trypsin-like peptidase domain ID12_01135 PF00072 Response regulator receiver domain ID12_01135 PF00486 Transcriptional regulatory protein, C terminal ID12_01140 PF00512 His Kinase A (phospho-acceptor) domain ID12_01140 PF00672 HAMP domain ID12_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_01150 PF00440 Bacterial regulatory proteins, tetR family ID12_01155 PF00206 Lyase ID12_01155 PF10415 Fumarase C C-terminus ID12_01165 PF03323 ID12_01165 ID12_01170 PF03845 ID12_01170 ID12_01175 PF05504 Spore germination B3/ GerAC like, C-terminal ID12_01185 PF00072 Response regulator receiver domain ID12_01185 PF00196 Bacterial regulatory proteins, luxR family ID12_01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_01190 PF07730 Histidine kinase ID12_01195 PF09922 Cell wall-active antibiotics response protein (DUF2154) ID12_01200 PF13349 ID12_01200 ID12_01205 PF04012 ID12_01205 ID12_01215 PF01923 Cobalamin adenosyltransferase ID12_01220 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_01225 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ID12_01230 PF07005 Protein of unknown function, DUF1537 ID12_01230 PF17042 ID12_01230 ID12_01235 PF02954 Bacterial regulatory protein, Fis family ID12_01235 PF06506 Propionate catabolism activator ID12_01235 PF14532 Sigma-54 interaction domain ID12_01240 PF13088 BNR repeat-like domain ID12_01245 PF00474 Sodium:solute symporter family ID12_01250 PF00465 Iron-containing alcohol dehydrogenase ID12_01255 PF00701 Dihydrodipicolinate synthetase family ID12_01260 PF00005 ABC transporter ID12_01265 PF01032 FecCD transport family ID12_01270 PF01497 Periplasmic binding protein ID12_01275 PF00295 Glycosyl hydrolases family 28 ID12_01275 PF12708 Pectate lyase superfamily protein ID12_01280 PF04295 ID12_01280 ID12_01280 PF08666 SAF domain ID12_01285 PF01232 Mannitol dehydrogenase Rossmann domain ID12_01285 PF08125 Mannitol dehydrogenase C-terminal domain ID12_01290 PF00356 Bacterial regulatory proteins, lacI family ID12_01290 PF13377 Periplasmic binding protein-like domain ID12_01295 PF02614 Glucuronate isomerase ID12_01300 PF00512 His Kinase A (phospho-acceptor) domain ID12_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_01305 PF00072 Response regulator receiver domain ID12_01305 PF00486 Transcriptional regulatory protein, C terminal ID12_01310 PF00005 ABC transporter ID12_01315 PF01032 FecCD transport family ID12_01320 PF01032 FecCD transport family ID12_01325 PF01497 Periplasmic binding protein ID12_01330 PF13520 Amino acid permease ID12_01335 PF09575 ID12_01335 ID12_01340 PF13463 Winged helix DNA-binding domain ID12_01345 PF04307 ID12_01345 ID12_01350 PF00884 Sulfatase ID12_01355 PF13531 Bacterial extracellular solute-binding protein ID12_01360 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01365 PF00248 Aldo/keto reductase family ID12_01370 PF00480 ROK family ID12_01375 PF00999 Sodium/hydrogen exchanger family ID12_01380 PF03458 ID12_01380 ID12_01385 PF02600 Disulfide bond formation protein DsbB ID12_01390 PF13462 Thioredoxin ID12_01395 PF00122 E1-E2 ATPase ID12_01395 PF00403 Heavy-metal-associated domain ID12_01395 PF00702 haloacid dehalogenase-like hydrolase ID12_01400 PF00005 ABC transporter ID12_01405 PF00950 ID12_01405 ID12_01410 PF01297 Periplasmic solute binding protein family ID12_01420 PF00440 Bacterial regulatory proteins, tetR family ID12_01420 PF13977 Bacterial transcriptional repressor ID12_01425 PF00072 Response regulator receiver domain ID12_01425 PF08664 ID12_01425 ID12_01430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_01435 PF00206 Lyase ID12_01435 PF10415 Fumarase C C-terminus ID12_01440 PF00375 Sodium:dicarboxylate symporter family ID12_01450 PF00122 E1-E2 ATPase ID12_01450 PF00403 Heavy-metal-associated domain ID12_01450 PF00702 haloacid dehalogenase-like hydrolase ID12_01455 PF00403 Heavy-metal-associated domain ID12_01460 PF02583 Metal-sensitive transcriptional repressor ID12_01470 PF00990 GGDEF domain ID12_01470 PF13188 PAS domain ID12_01470 PF16927 ID12_01470 ID12_01495 PF01668 SmpB protein ID12_01500 PF00575 S1 RNA binding domain ID12_01500 PF00773 RNB domain ID12_01500 PF08206 Ribonuclease B OB domain ID12_01505 PF12146 Putative lysophospholipase ID12_01510 PF03840 Preprotein translocase SecG subunit ID12_01515 PF04014 Antidote-toxin recognition MazE ID12_01520 PF01381 Helix-turn-helix ID12_01525 PF13560 Helix-turn-helix domain ID12_01530 PF13560 Helix-turn-helix domain ID12_01535 PF01638 HxlR-like helix-turn-helix ID12_01540 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01545 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ID12_01550 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01555 PF00005 ABC transporter ID12_01555 PF00571 CBS domain ID12_01565 PF01914 ID12_01565 ID12_01575 PF00583 Acetyltransferase (GNAT) family ID12_01595 PF00005 ABC transporter ID12_01605 PF00113 Enolase, C-terminal TIM barrel domain ID12_01605 PF03952 Enolase, N-terminal domain ID12_01610 PF01676 Metalloenzyme superfamily ID12_01610 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ID12_01615 PF00121 Triosephosphate isomerase ID12_01620 PF00162 Phosphoglycerate kinase ID12_01625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ID12_01625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ID12_01630 PF04198 Putative sugar-binding domain ID12_01635 PF00324 Amino acid permease ID12_01640 PF00202 Aminotransferase class-III ID12_01645 PF00158 Sigma-54 interaction domain ID12_01645 PF00989 PAS fold ID12_01645 PF02954 Bacterial regulatory protein, Fis family ID12_01650 PF00392 Bacterial regulatory proteins, gntR family ID12_01650 PF07729 FCD domain ID12_01660 PF00309 ID12_01660 ID12_01660 PF04552 Sigma-54, DNA binding domain ID12_01660 PF04963 Sigma-54 factor, core binding domain ID12_01665 PF09628 YvfG protein ID12_01670 PF01554 MatE ID12_01675 PF00005 ABC transporter ID12_01680 PF00005 ABC transporter ID12_01685 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01690 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ID12_01700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ID12_01705 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_01710 PF02397 ID12_01710 ID12_01715 PF01943 ID12_01715 ID12_01715 PF14667 Polysaccharide biosynthesis C-terminal domain ID12_01720 PF04230 ID12_01720 ID12_01725 PF00535 Glycosyl transferase family 2 ID12_01730 PF14897 ID12_01730 ID12_01735 PF13439 Glycosyltransferase Family 4 ID12_01735 PF13692 Glycosyl transferases group 1 ID12_01740 PF00535 Glycosyl transferase family 2 ID12_01745 PF00534 Glycosyl transferases group 1 ID12_01745 PF13439 Glycosyltransferase Family 4 ID12_01750 PF02719 Polysaccharide biosynthesis protein ID12_01750 PF13727 CoA-binding domain ID12_01755 PF13614 AAA domain ID12_01760 PF02706 Chain length determinant protein ID12_01765 PF01381 Helix-turn-helix ID12_01765 PF08671 Anti-repressor SinI ID12_01770 PF04688 ID12_01770 ID12_01775 PF01497 Periplasmic binding protein ID12_01780 PF01032 FecCD transport family ID12_01785 PF01032 FecCD transport family ID12_01790 PF01522 Polysaccharide deacetylase ID12_01790 PF11738 Protein of unknown function (DUF3298) ID12_01795 PF00005 ABC transporter ID12_01795 PF12848 ABC transporter ID12_01800 PF00005 ABC transporter ID12_01805 PF00005 ABC transporter ID12_01810 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01810 PF12911 ID12_01810 ID12_01815 PF00528 Binding-protein-dependent transport system inner membrane component ID12_01820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ID12_01825 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase ID12_01830 PF01497 Periplasmic binding protein ID12_01835 PF05163 DinB family ID12_01840 PF13676 TIR domain ID12_01850 PF02661 Fic/DOC family ID12_01865 PF00574 Clp protease ID12_01870 PF03641 Possible lysine decarboxylase ID12_01875 PF03819 MazG nucleotide pyrophosphohydrolase domain ID12_01880 PF00916 ID12_01880 ID12_01880 PF01740 STAS domain ID12_01885 PF00484 Carbonic anhydrase ID12_01895 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ID12_01895 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ID12_01900 PF00545 ribonuclease ID12_01905 PF00797 N-acetyltransferase ID12_01910 PF00381 PTS HPr component phosphorylation site ID12_01915 PF02650 WhiA C-terminal HTH domain ID12_01915 PF10298 WhiA N-terminal LAGLIDADG-like domain ID12_01915 PF14527 WhiA LAGLIDADG-like domain ID12_01920 PF01933 Uncharacterised protein family UPF0052 ID12_01925 PF03668 ID12_01925 ID12_01930 PF00293 NUDIX domain ID12_01935 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_01940 PF00877 NlpC/P60 family ID12_01945 PF14559 Tetratricopeptide repeat ID12_01950 PF01502 Phosphoribosyl-AMP cyclohydrolase ID12_01950 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ID12_01955 PF00977 Histidine biosynthesis protein ID12_01960 PF00977 Histidine biosynthesis protein ID12_01965 PF00117 Glutamine amidotransferase class-I ID12_01970 PF00475 Imidazoleglycerol-phosphate dehydratase ID12_01975 PF00815 Histidinol dehydrogenase ID12_01980 PF01634 ATP phosphoribosyltransferase ID12_01985 PF13393 Histidyl-tRNA synthetase ID12_01990 PF13529 Peptidase_C39 like family ID12_01995 PF01323 DSBA-like thioredoxin domain ID12_02005 PF13460 NADH(P)-binding ID12_02010 PF02082 Transcriptional regulator ID12_02015 PF14602 Hexapeptide repeat of succinyl-transferase ID12_02020 PF13419 Haloacid dehalogenase-like hydrolase ID12_02025 PF07670 Nucleoside recognition ID12_02030 PF01790 ID12_02030 ID12_02035 PF02603 HPr Serine kinase N terminus ID12_02035 PF07475 HPr Serine kinase C-terminal domain ID12_02040 PF01979 Amidohydrolase family ID12_02045 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ID12_02050 PF00392 Bacterial regulatory proteins, gntR family ID12_02050 PF07702 UTRA domain ID12_02055 PF00149 Calcineurin-like phosphoesterase ID12_02055 PF00932 Lamin Tail Domain ID12_02060 PF04020 ID12_02060 ID12_02065 PF04024 ID12_02065 ID12_02070 PF13349 ID12_02070 ID12_02085 PF00005 ABC transporter ID12_02090 PF00271 Helicase conserved C-terminal domain ID12_02090 PF02151 UvrB/uvrC motif ID12_02090 PF04851 Type III restriction enzyme, res subunit ID12_02090 PF12344 Ultra-violet resistance protein B ID12_02095 PF09964 ID12_02095 ID12_02100 PF00391 PEP-utilising enzyme, mobile domain ID12_02100 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ID12_02105 PF00440 Bacterial regulatory proteins, tetR family ID12_02110 PF07690 Major Facilitator Superfamily ID12_02120 PF00072 Response regulator receiver domain ID12_02120 PF00486 Transcriptional regulatory protein, C terminal ID12_02125 PF00512 His Kinase A (phospho-acceptor) domain ID12_02125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_02130 PF13231 ID12_02130 ID12_02135 PF00535 Glycosyl transferase family 2 ID12_02140 PF00324 Amino acid permease ID12_02145 PF00881 Nitroreductase family ID12_02150 PF01638 HxlR-like helix-turn-helix ID12_02160 PF17423 ID12_02160 ID12_02165 PF01471 Putative peptidoglycan binding domain ID12_02165 PF03572 Peptidase family S41 ID12_02165 PF13180 PDZ domain ID12_02170 PF01925 ID12_02170 ID12_02175 PF01551 Peptidase family M23 ID12_02180 PF02687 ID12_02180 ID12_02185 PF00005 ABC transporter ID12_02190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ID12_02195 PF02588 ID12_02195 ID12_02195 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ID12_02200 PF12695 Alpha/beta hydrolase family ID12_02205 PF01432 Peptidase family M3 ID12_02205 PF08439 Oligopeptidase F ID12_02210 PF00472 RF-1 domain ID12_02210 PF03462 PCRF domain ID12_02215 PF01043 SecA preprotein cross-linking domain ID12_02215 PF02810 SEC-C motif ID12_02215 PF07516 SecA Wing and Scaffold domain ID12_02215 PF07517 SecA DEAD-like domain ID12_02220 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ID12_02220 PF16321 ID12_02220 ID12_02225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_02225 PF00672 HAMP domain ID12_02240 PF02561 Flagellar protein FliS ID12_02245 PF02465 ID12_02245 ID12_02245 PF07195 ID12_02245 ID12_02245 PF07196 Flagellin hook IN motif ID12_02250 PF03646 FlaG protein ID12_02255 PF02599 Global regulator protein family ID12_02260 PF02623 FliW protein ID12_02270 PF00669 Bacterial flagellin N-terminal helical region ID12_02270 PF00700 Bacterial flagellin C-terminal helical region ID12_02275 PF00460 Flagella basal body rod protein ID12_02275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ID12_02280 PF05130 FlgN protein ID12_02285 PF04316 Anti-sigma-28 factor, FlgM ID12_02295 PF00156 Phosphoribosyl transferase domain ID12_02300 PF10719 ID12_02300 ID12_02305 PF00271 Helicase conserved C-terminal domain ID12_02305 PF04851 Type III restriction enzyme, res subunit ID12_02310 PF02645 Uncharacterised protein, DegV family COG1307 ID12_02315 PF00072 Response regulator receiver domain ID12_02315 PF00196 Bacterial regulatory proteins, luxR family ID12_02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_02320 PF05384 ID12_02320 ID12_02320 PF07730 Histidine kinase ID12_02325 PF01205 Uncharacterized protein family UPF0029 ID12_02325 PF09186 Domain of unknown function (DUF1949) ID12_02330 PF03816 Cell envelope-related transcriptional attenuator domain ID12_02335 PF00953 Glycosyl transferase family 4 ID12_02340 PF13692 Glycosyl transferases group 1 ID12_02345 PF00535 Glycosyl transferase family 2 ID12_02355 PF04932 ID12_02355 ID12_02360 PF01370 NAD dependent epimerase/dehydratase family ID12_02365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ID12_02365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ID12_02365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ID12_02370 PF00534 Glycosyl transferases group 1 ID12_02370 PF13579 Glycosyl transferase 4-like domain ID12_02375 PF13440 ID12_02375 ID12_02380 PF02397 ID12_02380 ID12_02390 PF01520 N-acetylmuramoyl-L-alanine amidase ID12_02390 PF04122 ID12_02390 ID12_02395 PF01520 N-acetylmuramoyl-L-alanine amidase ID12_02395 PF04122 ID12_02395 ID12_02400 PF04122 ID12_02400 ID12_02400 PF08486 ID12_02400 ID12_02410 PF03816 Cell envelope-related transcriptional attenuator domain ID12_02415 PF02350 UDP-N-acetylglucosamine 2-epimerase ID12_02420 PF00483 Nucleotidyl transferase ID12_02425 PF00005 ABC transporter ID12_02430 PF01061 ID12_02430 ID12_02435 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ID12_02440 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ID12_02445 PF09318 Domain of unknown function (DUF1975) ID12_02450 PF01467 Cytidylyltransferase ID12_02455 PF03808 ID12_02455 ID12_02460 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ID12_02465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ID12_02465 PF08239 Bacterial SH3 domain ID12_02470 PF01238 Phosphomannose isomerase type I ID12_02475 PF00528 Binding-protein-dependent transport system inner membrane component ID12_02480 PF00528 Binding-protein-dependent transport system inner membrane component ID12_02485 PF01547 Bacterial extracellular solute-binding protein ID12_02490 PF00072 Response regulator receiver domain ID12_02490 PF12833 Helix-turn-helix domain ID12_02495 PF00672 HAMP domain ID12_02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_02495 PF06580 ID12_02495 ID12_02500 PF13407 Periplasmic binding protein domain ID12_02505 PF00583 Acetyltransferase (GNAT) family ID12_02510 PF01081 KDPG and KHG aldolase ID12_02515 PF00294 pfkB family carbohydrate kinase ID12_02520 PF00356 Bacterial regulatory proteins, lacI family ID12_02520 PF13377 Periplasmic binding protein-like domain ID12_02525 PF04962 KduI/IolB family ID12_02530 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_02535 PF03323 ID12_02535 ID12_02540 PF03845 ID12_02540 ID12_02545 PF05504 Spore germination B3/ GerAC like, C-terminal ID12_02550 PF00535 Glycosyl transferase family 2 ID12_02550 PF13489 Methyltransferase domain ID12_02560 PF00083 Sugar (and other) transporter ID12_02565 PF03816 Cell envelope-related transcriptional attenuator domain ID12_02570 PF08282 haloacid dehalogenase-like hydrolase ID12_02575 PF00877 NlpC/P60 family ID12_02585 PF09587 Bacterial capsule synthesis protein PGA_cap ID12_02590 PF14102 ID12_02590 ID12_02595 PF08245 Mur ligase middle domain ID12_02600 PF03323 ID12_02600 ID12_02605 PF03845 ID12_02605 ID12_02610 PF05504 Spore germination B3/ GerAC like, C-terminal ID12_02615 PF00356 Bacterial regulatory proteins, lacI family ID12_02615 PF13377 Periplasmic binding protein-like domain ID12_02620 PF00294 pfkB family carbohydrate kinase ID12_02625 PF05025 RbsD / FucU transport protein family ID12_02630 PF00005 ABC transporter ID12_02635 PF02653 ID12_02635 ID12_02640 PF13407 Periplasmic binding protein domain ID12_02645 PF01613 Flavin reductase like domain ID12_02650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_02650 PF03466 LysR substrate binding domain ID12_02655 PF00205 Thiamine pyrophosphate enzyme, central domain ID12_02655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ID12_02655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ID12_02660 PF03306 Alpha-acetolactate decarboxylase ID12_02665 PF01037 AsnC family ID12_02665 PF13404 AsnC-type helix-turn-helix domain ID12_02670 PF02417 ID12_02670 ID12_02675 PF02417 ID12_02675 ID12_02680 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ID12_02680 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ID12_02680 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ID12_02690 PF04434 ID12_02690 ID12_02695 PF00176 SNF2 family N-terminal domain ID12_02695 PF00271 Helicase conserved C-terminal domain ID12_02695 PF12419 ID12_02695 ID12_02700 PF01740 STAS domain ID12_02700 PF13426 PAS domain ID12_02705 PF08282 haloacid dehalogenase-like hydrolase ID12_02715 PF14183 ID12_02715 ID12_02720 PF01741 Large-conductance mechanosensitive channel, MscL ID12_02725 PF07977 FabA-like domain ID12_02730 PF13424 Tetratricopeptide repeat ID12_02735 PF00460 Flagella basal body rod protein ID12_02735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ID12_02740 PF00460 Flagella basal body rod protein ID12_02740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ID12_02750 PF06723 MreB/Mbl protein ID12_02755 PF12116 Stage III sporulation protein D ID12_02760 PF01047 MarR family ID12_02765 PF07690 Major Facilitator Superfamily ID12_02770 PF01569 PAP2 superfamily ID12_02775 PF07690 Major Facilitator Superfamily ID12_02780 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_02785 PF00528 Binding-protein-dependent transport system inner membrane component ID12_02790 PF00005 ABC transporter ID12_02795 PF00909 Ammonium Transporter Family ID12_02800 PF00543 Nitrogen regulatory protein P-II ID12_02805 PF01551 Peptidase family M23 ID12_02810 PF13420 Acetyltransferase (GNAT) domain ID12_02815 PF00578 AhpC/TSA family ID12_02820 PF07291 ID12_02820 ID12_02825 PF00005 ABC transporter ID12_02840 PF17319 ID12_02840 ID12_02845 PF00471 Ribosomal protein L33 ID12_02850 PF02492 CobW/HypB/UreG, nucleotide-binding domain ID12_02850 PF07683 Cobalamin synthesis protein cobW C-terminal domain ID12_02855 PF00253 Ribosomal protein S14p/S29e ID12_02860 PF04055 Radical SAM superfamily ID12_02860 PF06463 Molybdenum Cofactor Synthesis C ID12_02860 PF13353 4Fe-4S single cluster domain ID12_02865 PF02634 FdhD/NarQ family ID12_02870 PF07690 Major Facilitator Superfamily ID12_02875 PF00384 Molybdopterin oxidoreductase ID12_02875 PF01568 Molydopterin dinucleotide binding domain ID12_02880 PF00092 von Willebrand factor type A domain ID12_02885 PF00092 von Willebrand factor type A domain ID12_02890 PF08486 ID12_02890 ID12_02895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ID12_02900 PF08680 Protein of unknown function (DUF1779) ID12_02905 PF06612 ID12_02905 ID12_02915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ID12_02915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ID12_02920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ID12_02920 PF02874 ATP synthase alpha/beta family, beta-barrel domain ID12_02925 PF00231 ATP synthase ID12_02930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ID12_02930 PF00306 ATP synthase alpha/beta chain, C terminal domain ID12_02930 PF02874 ATP synthase alpha/beta family, beta-barrel domain ID12_02935 PF00213 ATP synthase delta (OSCP) subunit ID12_02940 PF00430 ATP synthase B/B' CF(0) ID12_02945 PF00137 ATP synthase subunit C ID12_02950 PF00119 ATP synthase A chain ID12_02955 PF03899 ID12_02955 ID12_02965 PF14681 Uracil phosphoribosyltransferase ID12_02970 PF00464 Serine hydroxymethyltransferase ID12_02975 PF04260 Protein of unknown function (DUF436) ID12_02980 PF02502 Ribose/Galactose Isomerase ID12_02985 PF01451 Low molecular weight phosphotyrosine protein phosphatase ID12_02990 PF02659 ID12_02990 ID12_02995 PF01300 Telomere recombination ID12_02995 PF03481 Putative GTP-binding controlling metal-binding ID12_03005 PF09551 ID12_03005 ID12_03015 PF05175 Methyltransferase small domain ID12_03020 PF00472 RF-1 domain ID12_03020 PF03462 PCRF domain ID12_03025 PF13411 MerR HTH family regulatory protein ID12_03030 PF03547 ID12_03030 ID12_03035 PF00390 Malic enzyme, N-terminal domain ID12_03035 PF03949 Malic enzyme, NAD binding domain ID12_03040 PF00265 Thymidine kinase ID12_03045 PF01197 Ribosomal protein L31 ID12_03050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ID12_03050 PF07497 Rho termination factor, RNA-binding domain ID12_03050 PF07498 Rho termination factor, N-terminal domain ID12_03055 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ID12_03060 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ID12_03065 PF00923 Transaldolase ID12_03070 PF01116 Fructose-bisphosphate aldolase class-II ID12_03075 PF00072 Response regulator receiver domain ID12_03080 PF10740 Protein of unknown function (DUF2529) ID12_03085 PF00117 Glutamine amidotransferase class-I ID12_03085 PF06418 CTP synthase N-terminus ID12_03090 PF05066 HB1, ASXL, restriction endonuclease HTH domain ID12_03105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ID12_03105 PF02770 Acyl-CoA dehydrogenase, middle domain ID12_03105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ID12_03110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ID12_03110 PF02770 Acyl-CoA dehydrogenase, middle domain ID12_03110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ID12_03115 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ID12_03115 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ID12_03120 PF00108 Thiolase, N-terminal domain ID12_03120 PF02803 Thiolase, C-terminal domain ID12_03125 PF02754 ID12_03125 ID12_03125 PF13183 4Fe-4S dicluster domain ID12_03130 PF13091 PLD-like domain ID12_03135 PF03851 UV-endonuclease UvdE ID12_03145 PF02016 LD-carboxypeptidase ID12_03155 PF00005 ABC transporter ID12_03155 PF00664 ABC transporter transmembrane region ID12_03160 PF13091 PLD-like domain ID12_03160 PF13396 ID12_03160 ID12_03165 PF02016 LD-carboxypeptidase ID12_03175 PF00750 tRNA synthetases class I (R) ID12_03175 PF03485 Arginyl tRNA synthetase N terminal domain ID12_03175 PF05746 DALR anticodon binding domain ID12_03180 PF09148 Domain of unknown function (DUF1934) ID12_03190 PF00491 Arginase family ID12_03195 PF01564 Spermine/spermidine synthase ID12_03195 PF17284 ID12_03195 ID12_03200 PF00905 Penicillin binding protein transpeptidase domain ID12_03200 PF00912 Transglycosylase ID12_03205 PF08741 ID12_03205 ID12_03210 PF02163 Peptidase family M50 ID12_03215 PF01361 Tautomerase enzyme ID12_03220 PF13688 Metallo-peptidase family M12 ID12_03225 PF00296 Luciferase-like monooxygenase ID12_03230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_03230 PF03466 LysR substrate binding domain ID12_03235 PF03358 NADPH-dependent FMN reductase ID12_03240 PF00296 Luciferase-like monooxygenase ID12_03245 PF00462 Glutaredoxin ID12_03250 PF00583 Acetyltransferase (GNAT) family ID12_03255 PF00528 Binding-protein-dependent transport system inner membrane component ID12_03260 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_03265 PF00528 Binding-protein-dependent transport system inner membrane component ID12_03270 PF00005 ABC transporter ID12_03280 PF01966 HD domain ID12_03285 PF07293 ID12_03285 ID12_03300 PF00535 Glycosyl transferase family 2 ID12_03300 PF07238 PilZ domain ID12_03305 PF12688 Tetratrico peptide repeat ID12_03310 PF03099 Biotin/lipoate A/B protein ligase family ID12_03350 PF17279 ID12_03350 ID12_03355 PF16888 ID12_03355 ID12_03365 PF06808 ID12_03365 ID12_03370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ID12_03370 PF09130 Domain of unknown function (DUF1932) ID12_03375 PF03737 Demethylmenaquinone methyltransferase ID12_03380 PF01380 SIS domain ID12_03380 PF01418 Helix-turn-helix domain, rpiR family ID12_03385 PF01515 Phosphate acetyl/butaryl transferase ID12_03390 PF06778 Chlorite dismutase ID12_03395 PF07690 Major Facilitator Superfamily ID12_03400 PF01037 AsnC family ID12_03400 PF13412 Winged helix-turn-helix DNA-binding ID12_03405 PF07690 Major Facilitator Superfamily ID12_03415 PF07883 Cupin domain ID12_03420 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_03425 PF13535 ATP-grasp domain ID12_03430 PF00155 Aminotransferase class I and II ID12_03435 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_03440 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ID12_03445 PF04321 RmlD substrate binding domain ID12_03450 PF16363 ID12_03450 ID12_03455 PF00483 Nucleotidyl transferase ID12_03460 PF04101 Glycosyltransferase family 28 C-terminal domain ID12_03465 PF02348 Cytidylyltransferase ID12_03470 PF03102 NeuB family ID12_03470 PF08666 SAF domain ID12_03475 PF13673 Acetyltransferase (GNAT) domain ID12_03480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ID12_03485 PF05159 ID12_03485 ID12_03490 PF00535 Glycosyl transferase family 2 ID12_03500 PF09671 ID12_03500 ID12_03505 PF00190 Cupin ID12_03510 PF04241 ID12_03510 ID12_03515 PF00860 Permease family ID12_03520 PF17261 ID12_03520 ID12_03525 PF00171 Aldehyde dehydrogenase family ID12_03530 PF03167 Uracil DNA glycosylase superfamily ID12_03535 PF00535 Glycosyl transferase family 2 ID12_03540 PF11181 ID12_03540 ID12_03545 PF08543 Phosphomethylpyrimidine kinase ID12_03550 PF00756 Putative esterase ID12_03550 PF13290 ID12_03550 ID12_03560 PF00251 Glycosyl hydrolases family 32 N-terminal domain ID12_03560 PF08244 Glycosyl hydrolases family 32 C terminal ID12_03565 PF00367 phosphotransferase system, EIIB ID12_03565 PF02378 Phosphotransferase system, EIIC ID12_03570 PF00874 PRD domain ID12_03570 PF03123 CAT RNA binding domain ID12_03580 PF00082 Subtilase family ID12_03580 PF02225 PA domain ID12_03580 PF05922 Peptidase inhibitor I9 ID12_03580 PF13860 FlgD Ig-like domain ID12_03590 PF00296 Luciferase-like monooxygenase ID12_03595 PF00881 Nitroreductase family ID12_03600 PF01098 ID12_03600 ID12_03605 PF17368 ID12_03605 ID12_03610 PF03626 ID12_03610 ID12_03615 PF00510 Cytochrome c oxidase subunit III ID12_03620 PF00115 Cytochrome C and Quinol oxidase polypeptide I ID12_03625 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ID12_03630 PF00557 Metallopeptidase family M24 ID12_03630 PF01321 Creatinase/Prolidase N-terminal domain ID12_03635 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ID12_03635 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ID12_03640 PF01370 NAD dependent epimerase/dehydratase family ID12_03645 PF00288 GHMP kinases N terminal domain ID12_03645 PF08544 GHMP kinases C terminal ID12_03645 PF10509 Galactokinase galactose-binding signature ID12_03650 PF02311 AraC-like ligand binding domain ID12_03650 PF12833 Helix-turn-helix domain ID12_03660 PF04138 ID12_03660 ID12_03670 PF13489 Methyltransferase domain ID12_03675 PF13712 Glycosyltransferase like family ID12_03680 PF04341 ID12_03680 ID12_03685 PF00474 Sodium:solute symporter family ID12_03695 PF14119 ID12_03695 ID12_03705 PF12680 SnoaL-like domain ID12_03710 PF02581 Thiamine monophosphate synthase/TENI ID12_03715 PF02110 Hydroxyethylthiazole kinase family ID12_03720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_03720 PF03466 LysR substrate binding domain ID12_03725 PF03788 ID12_03725 ID12_03730 PF04172 ID12_03730 ID12_03735 PF10672 S-adenosylmethionine-dependent methyltransferase ID12_03740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_03745 PF00005 ABC transporter ID12_03750 PF00528 Binding-protein-dependent transport system inner membrane component ID12_03755 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_03765 PF13374 Tetratricopeptide repeat ID12_03775 PF04607 Region found in RelA / SpoT proteins ID12_03780 PF02653 ID12_03780 ID12_03785 PF00005 ABC transporter ID12_03790 PF13407 Periplasmic binding protein domain ID12_03795 PF07602 ID12_03795 ID12_03800 PF01063 Aminotransferase class IV ID12_03815 PF02056 Family 4 glycosyl hydrolase ID12_03815 PF11975 Family 4 glycosyl hydrolase C-terminal domain ID12_03820 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ID12_03825 PF02378 Phosphotransferase system, EIIC ID12_03830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_03835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_03835 PF00874 PRD domain ID12_03835 PF05043 Mga helix-turn-helix domain ID12_03835 PF08279 HTH domain ID12_03840 PF04203 Sortase family ID12_03855 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ID12_03855 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ID12_03865 PF17280 ID12_03865 ID12_03870 PF04542 Sigma-70 region 2 ID12_03870 PF08281 Sigma-70, region 4 ID12_03875 PF00544 Pectate lyase ID12_03880 PF00005 ABC transporter ID12_03880 PF00664 ABC transporter transmembrane region ID12_03885 PF00005 ABC transporter ID12_03885 PF00664 ABC transporter transmembrane region ID12_03890 PF02322 ID12_03890 ID12_03895 PF01654 ID12_03895 ID12_03900 PF00005 ABC transporter ID12_03900 PF03992 Antibiotic biosynthesis monooxygenase ID12_03905 PF01032 FecCD transport family ID12_03910 PF01497 Periplasmic binding protein ID12_03915 PF04203 Sortase family ID12_03920 PF00005 ABC transporter ID12_03925 PF01032 FecCD transport family ID12_03930 PF01497 Periplasmic binding protein ID12_03935 PF05031 Iron Transport-associated domain ID12_03940 PF05031 Iron Transport-associated domain ID12_03945 PF05031 Iron Transport-associated domain ID12_03955 PF01638 HxlR-like helix-turn-helix ID12_03960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_03965 PF00925 GTP cyclohydrolase II ID12_03970 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ID12_03970 PF01872 RibD C-terminal domain ID12_03975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_03985 PF01522 Polysaccharide deacetylase ID12_03990 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ID12_03995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_04000 PF00232 Glycosyl hydrolase family 1 ID12_04005 PF03786 D-mannonate dehydratase (UxuA) ID12_04010 PF03786 D-mannonate dehydratase (UxuA) ID12_04015 PF02378 Phosphotransferase system, EIIC ID12_04020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_04020 PF00874 PRD domain ID12_04020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_04020 PF05043 Mga helix-turn-helix domain ID12_04020 PF08279 HTH domain ID12_04030 PF16888 ID12_04030 ID12_04035 PF17279 ID12_04035 ID12_04040 PF16888 ID12_04040 ID12_04045 PF03553 ID12_04045 ID12_04050 PF00206 Lyase ID12_04050 PF10415 Fumarase C C-terminus ID12_04055 PF00710 Asparaginase ID12_04060 PF01381 Helix-turn-helix ID12_04065 PF01381 Helix-turn-helix ID12_04070 PF17353 ID12_04070 ID12_04085 PF06013 Proteins of 100 residues with WXG ID12_04090 PF01546 Peptidase family M20/M25/M40 ID12_04090 PF07687 Peptidase dimerisation domain ID12_04100 PF11738 Protein of unknown function (DUF3298) ID12_04100 PF13739 Domain of unknown function (DUF4163) ID12_04105 PF01380 SIS domain ID12_04105 PF01418 Helix-turn-helix domain, rpiR family ID12_04110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ID12_04110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ID12_04115 PF07005 Protein of unknown function, DUF1537 ID12_04115 PF17042 ID12_04115 ID12_04120 PF02447 ID12_04120 ID12_04125 PF01717 Cobalamin-independent synthase, Catalytic domain ID12_04135 PF00005 ABC transporter ID12_04140 PF00232 Glycosyl hydrolase family 1 ID12_04145 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ID12_04145 PF00367 phosphotransferase system, EIIB ID12_04145 PF02378 Phosphotransferase system, EIIC ID12_04150 PF00874 PRD domain ID12_04150 PF03123 CAT RNA binding domain ID12_04155 PF09234 Domain of unknown function (DUF1963) ID12_04160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_04165 PF02361 Cobalt transport protein ID12_04170 PF00005 ABC transporter ID12_04175 PF09819 ID12_04175 ID12_04180 PF03070 TENA/THI-4/PQQC family ID12_04190 PF01965 DJ-1/PfpI family ID12_04200 PF06993 ID12_04200 ID12_04205 PF10552 ID12_04205 ID12_04210 PF05547 ID12_04210 ID12_04215 PF03992 Antibiotic biosynthesis monooxygenase ID12_04220 PF00881 Nitroreductase family ID12_04225 PF01047 MarR family ID12_04235 PF00591 Glycosyl transferase family, a/b domain ID12_04235 PF02885 Glycosyl transferase family, helical bundle domain ID12_04235 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ID12_04240 PF01773 Na+ dependent nucleoside transporter N-terminus ID12_04240 PF07662 Na+ dependent nucleoside transporter C-terminus ID12_04240 PF07670 Nucleoside recognition ID12_04245 PF01791 DeoC/LacD family aldolase ID12_04250 PF04198 Putative sugar-binding domain ID12_04250 PF04545 Sigma-70, region 4 ID12_04255 PF01263 Aldose 1-epimerase ID12_04260 PF01757 ID12_04260 ID12_04265 PF07690 Major Facilitator Superfamily ID12_04270 PF03435 Saccharopine dehydrogenase ID12_04275 PF08241 Methyltransferase domain ID12_04280 PF00196 Bacterial regulatory proteins, luxR family ID12_04280 PF01590 GAF domain ID12_04285 PF08282 haloacid dehalogenase-like hydrolase ID12_04290 PF13411 MerR HTH family regulatory protein ID12_04295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ID12_04300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_04300 PF08447 PAS fold ID12_04310 PF00324 Amino acid permease ID12_04315 PF08713 DNA alkylation repair enzyme ID12_04320 PF02447 ID12_04320 ID12_04325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ID12_04325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ID12_04330 PF01380 SIS domain ID12_04330 PF01418 Helix-turn-helix domain, rpiR family ID12_04335 PF01156 Inosine-uridine preferring nucleoside hydrolase ID12_04340 PF07252 Protein of unknown function (DUF1433) ID12_04345 PF07252 Protein of unknown function (DUF1433) ID12_04355 PF01764 Lipase (class 3) ID12_04370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_04370 PF03466 LysR substrate binding domain ID12_04375 PF00356 Bacterial regulatory proteins, lacI family ID12_04375 PF13377 Periplasmic binding protein-like domain ID12_04380 PF13416 Bacterial extracellular solute-binding protein ID12_04385 PF00528 Binding-protein-dependent transport system inner membrane component ID12_04390 PF00528 Binding-protein-dependent transport system inner membrane component ID12_04395 PF07745 Glycosyl hydrolase family 53 ID12_04400 PF02449 Beta-galactosidase ID12_04400 PF08532 Beta-galactosidase trimerisation domain ID12_04400 PF08533 Beta-galactosidase C-terminal domain ID12_04405 PF03600 Citrate transporter ID12_04410 PF13273 ID12_04410 ID12_04415 PF12679 ID12_04415 ID12_04420 PF00005 ABC transporter ID12_04425 PF03831 PhnA protein ID12_04425 PF08274 PhnA Zinc-Ribbon ID12_04430 PF02595 Glycerate kinase family ID12_04435 PF02447 ID12_04435 ID12_04440 PF05651 ID12_04440 ID12_04440 PF13556 PucR C-terminal helix-turn-helix domain ID12_04445 PF00440 Bacterial regulatory proteins, tetR family ID12_04450 PF07690 Major Facilitator Superfamily ID12_04455 PF02687 ID12_04455 ID12_04460 PF00005 ABC transporter ID12_04475 PF00874 PRD domain ID12_04475 PF03123 CAT RNA binding domain ID12_04480 PF00232 Glycosyl hydrolase family 1 ID12_04485 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ID12_04485 PF00367 phosphotransferase system, EIIB ID12_04485 PF02378 Phosphotransferase system, EIIC ID12_04500 PF03551 Transcriptional regulator PadR-like family ID12_04500 PF10400 Virulence activator alpha C-term ID12_04505 PF13826 ID12_04505 ID12_04510 PF00293 NUDIX domain ID12_04515 PF01381 Helix-turn-helix ID12_04520 PF11368 ID12_04520 ID12_04525 PF00324 Amino acid permease ID12_04530 PF00356 Bacterial regulatory proteins, lacI family ID12_04530 PF13377 Periplasmic binding protein-like domain ID12_04535 PF07690 Major Facilitator Superfamily ID12_04540 PF08501 Shikimate dehydrogenase substrate binding domain ID12_04545 PF07690 Major Facilitator Superfamily ID12_04575 PF02342 TerD domain ID12_04585 PF00232 Glycosyl hydrolase family 1 ID12_04590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ID12_04590 PF00367 phosphotransferase system, EIIB ID12_04590 PF02378 Phosphotransferase system, EIIC ID12_04595 PF00392 Bacterial regulatory proteins, gntR family ID12_04595 PF07702 UTRA domain ID12_04610 PF02567 Phenazine biosynthesis-like protein ID12_04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_04615 PF03466 LysR substrate binding domain ID12_04625 PF04525 Tubby C 2 ID12_04630 PF17074 ID12_04630 ID12_04635 PF00027 Cyclic nucleotide-binding domain ID12_04650 PF00753 Metallo-beta-lactamase superfamily ID12_04660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ID12_04675 PF02590 Predicted SPOUT methyltransferase ID12_04685 PF02361 Cobalt transport protein ID12_04690 PF00005 ABC transporter ID12_04690 PF12558 ID12_04690 ID12_04695 PF07155 ECF-type riboflavin transporter, S component ID12_04700 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase ID12_04705 PF12679 ID12_04705 ID12_04710 PF00005 ABC transporter ID12_04715 PF00583 Acetyltransferase (GNAT) family ID12_04720 PF13180 PDZ domain ID12_04720 PF13365 Trypsin-like peptidase domain ID12_04725 PF00753 Metallo-beta-lactamase superfamily ID12_04730 PF09648 YycH protein ID12_04735 PF07435 YycH protein ID12_04740 PF00512 His Kinase A (phospho-acceptor) domain ID12_04740 PF00672 HAMP domain ID12_04740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_04740 PF13426 PAS domain ID12_04745 PF00072 Response regulator receiver domain ID12_04745 PF00486 Transcriptional regulatory protein, C terminal ID12_04770 PF00578 AhpC/TSA family ID12_04780 PF04235 ID12_04780 ID12_04785 PF00709 Adenylosuccinate synthetase ID12_04790 PF00440 Bacterial regulatory proteins, tetR family ID12_04790 PF14278 ID12_04790 ID12_04795 PF00067 Cytochrome P450 ID12_04800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_04805 PF00772 DnaB-like helicase N terminal domain ID12_04805 PF03796 DnaB-like helicase C terminal domain ID12_04810 PF16226 ID12_04810 ID12_04825 PF00756 Putative esterase ID12_04830 PF01497 Periplasmic binding protein ID12_04830 PF12833 Helix-turn-helix domain ID12_04835 PF01497 Periplasmic binding protein ID12_04840 PF00756 Putative esterase ID12_04850 PF07690 Major Facilitator Superfamily ID12_04855 PF01281 Ribosomal protein L9, N-terminal domain ID12_04855 PF03948 Ribosomal protein L9, C-terminal domain ID12_04860 PF01368 DHH family ID12_04860 PF02272 DHHA1 domain ID12_04865 PF09991 ID12_04865 ID12_04870 PF01368 DHH family ID12_04870 PF02833 DHHA2 domain ID12_04875 PF11738 Protein of unknown function (DUF3298) ID12_04875 PF13739 Domain of unknown function (DUF4163) ID12_04880 PF04542 Sigma-70 region 2 ID12_04880 PF08281 Sigma-70, region 4 ID12_04890 PF00199 Catalase ID12_04890 PF06628 Catalase-related immune-responsive ID12_04895 PF03358 NADPH-dependent FMN reductase ID12_04900 PF01738 Dienelactone hydrolase family ID12_04905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_04910 PF00528 Binding-protein-dependent transport system inner membrane component ID12_04910 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ID12_04915 PF00005 ABC transporter ID12_04920 PF01084 Ribosomal protein S18 ID12_04925 PF00436 Single-strand binding protein family ID12_04930 PF01250 Ribosomal protein S6 ID12_04935 PF01926 50S ribosome-binding GTPase ID12_04935 PF06071 Protein of unknown function (DUF933) ID12_04940 PF06107 ID12_04940 ID12_04960 PF06866 ID12_04960 ID12_04965 PF02195 ParB-like nuclease domain ID12_04965 PF08535 KorB domain ID12_04970 PF13614 AAA domain ID12_04975 PF05708 Orthopoxvirus protein of unknown function (DUF830) ID12_04980 PF02195 ParB-like nuclease domain ID12_04985 PF02527 rRNA small subunit methyltransferase G ID12_04990 PF01134 Glucose inhibited division protein A ID12_04990 PF13932 GidA associated domain 3 ID12_04995 PF01926 50S ribosome-binding GTPase ID12_04995 PF10396 GTP-binding protein TrmE N-terminus ID12_04995 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE ID12_05000 PF01424 R3H domain ID12_05000 PF13083 KH domain ID12_05000 PF14804 Jag N-terminus ID12_05005 PF02096 60Kd inner membrane protein ID12_05010 PF00825 Ribonuclease P ID12_05020 PF00308 Bacterial dnaA protein ID12_05020 PF08299 Bacterial dnaA protein helix-turn-helix ID12_05020 PF11638 DnaA N-terminal domain ID12_05025 PF00712 DNA polymerase III beta subunit, N-terminal domain ID12_05025 PF02767 DNA polymerase III beta subunit, central domain ID12_05025 PF02768 DNA polymerase III beta subunit, C-terminal domain ID12_05030 PF13275 S4 domain ID12_05035 PF02463 RecF/RecN/SMC N terminal domain ID12_05040 PF04025 ID12_05040 ID12_05045 PF00204 DNA gyrase B ID12_05045 PF00986 DNA gyrase B subunit, carboxyl terminus ID12_05045 PF01751 Toprim domain ID12_05045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_05050 PF00521 DNA gyrase/topoisomerase IV, subunit A ID12_05050 PF03989 DNA gyrase C-terminal domain, beta-propeller ID12_05085 PF14175 ID12_05085 ID12_05090 PF00478 IMP dehydrogenase / GMP reductase domain ID12_05090 PF00571 CBS domain ID12_05095 PF00768 D-alanyl-D-alanine carboxypeptidase ID12_05095 PF07943 Penicillin-binding protein 5, C-terminal domain ID12_05100 PF00155 Aminotransferase class I and II ID12_05100 PF00392 Bacterial regulatory proteins, gntR family ID12_05105 PF01680 SOR/SNZ family ID12_05110 PF01174 SNO glutamine amidotransferase family ID12_05115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ID12_05115 PF02403 Seryl-tRNA synthetase N-terminal domain ID12_05120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_05130 PF01712 Deoxynucleoside kinase ID12_05135 PF01712 Deoxynucleoside kinase ID12_05140 PF00704 Glycosyl hydrolases family 18 ID12_05140 PF01476 LysM domain ID12_05145 PF00857 Isochorismatase family ID12_05150 PF14437 ID12_05150 ID12_05155 PF12169 DNA polymerase III subunits gamma and tau domain III ID12_05155 PF13177 DNA polymerase III, delta subunit ID12_05160 PF02575 YbaB/EbfC DNA-binding family ID12_05165 PF02132 RecR protein ID12_05165 PF13662 Toprim domain ID12_05170 PF10704 ID12_05170 ID12_05175 PF07441 ID12_05175 ID12_05205 PF10764 ID12_05205 ID12_05210 PF10112 ID12_05210 ID12_05215 PF05816 ID12_05215 ID12_05220 PF01276 Orn/Lys/Arg decarboxylase, major domain ID12_05220 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ID12_05225 PF02223 Thymidylate kinase ID12_05230 PF06153 Protein of unknown function (DUF970) ID12_05235 PF03885 Protein of unknown function (DUF327) ID12_05240 PF09115 DNA polymerase III, delta subunit, C terminal ID12_05240 PF13177 DNA polymerase III, delta subunit ID12_05245 PF04468 ID12_05245 ID12_05250 PF06156 ID12_05250 ID12_05255 PF05175 Methyltransferase small domain ID12_05260 PF01541 GIY-YIG catalytic domain ID12_05265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ID12_05270 PF04014 Antidote-toxin recognition MazE ID12_05275 PF01588 Putative tRNA binding domain ID12_05275 PF08264 Anticodon-binding domain of tRNA ID12_05275 PF09334 tRNA synthetases class I (M) ID12_05280 PF01026 TatD related DNase ID12_05285 PF03990 ID12_05285 ID12_05285 PF06725 3D domain ID12_05285 PF07501 G5 domain ID12_05290 PF13331 ID12_05290 ID12_05290 PF13662 Toprim domain ID12_05295 PF00398 Ribosomal RNA adenine dimethylase ID12_05300 PF05582 ID12_05300 ID12_05305 PF06257 Protein of unknown function (DUF1021) ID12_05310 PF00269 Small, acid-soluble spore proteins, alpha/beta type ID12_05315 PF00288 GHMP kinases N terminal domain ID12_05315 PF08544 GHMP kinases C terminal ID12_05320 PF00156 Phosphoribosyl transferase domain ID12_05320 PF09182 Bacterial purine repressor, N-terminal ID12_05325 PF01042 Endoribonuclease L-PSP ID12_05330 PF04026 SpoVG ID12_05335 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_05335 PF00483 Nucleotidyl transferase ID12_05340 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ID12_05340 PF14572 Phosphoribosyl synthetase-associated domain ID12_05345 PF01386 Ribosomal L25p family ID12_05345 PF14693 Ribosomal protein TL5, C-terminal domain ID12_05350 PF01195 Peptidyl-tRNA hydrolase ID12_05355 PF10955 ID12_05355 ID12_05360 PF00270 DEAD/DEAH box helicase ID12_05360 PF00271 Helicase conserved C-terminal domain ID12_05360 PF02559 CarD-like/TRCF domain ID12_05360 PF03461 TRCF domain ID12_05365 PF04014 Antidote-toxin recognition MazE ID12_05365 PF15714 ID12_05365 ID12_05370 PF01943 ID12_05370 ID12_05370 PF14667 Polysaccharide biosynthesis C-terminal domain ID12_05375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ID12_05375 PF03819 MazG nucleotide pyrophosphohydrolase domain ID12_05380 PF01479 S4 domain ID12_05385 PF07873 YabP family ID12_05390 PF09578 ID12_05390 ID12_05395 PF04977 Septum formation initiator ID12_05400 PF00575 S1 RNA binding domain ID12_05420 PF07228 Stage II sporulation protein E (SpoIIE) ID12_05425 PF00092 von Willebrand factor type A domain ID12_05425 PF13519 von Willebrand factor type A domain ID12_05430 PF00069 Protein kinase domain ID12_05435 PF01171 PP-loop family ID12_05435 PF11734 TilS substrate C-terminal domain ID12_05440 PF00156 Phosphoribosyl transferase domain ID12_05445 PF00004 ATPase family associated with various cellular activities (AAA) ID12_05445 PF01434 Peptidase family M41 ID12_05445 PF06480 FtsH Extracellular ID12_05450 PF03309 Type III pantothenate kinase ID12_05455 PF01430 Hsp33 protein ID12_05460 PF13145 PPIC-type PPIASE domain ID12_05460 PF13624 SurA N-terminal domain ID12_05465 PF00291 Pyridoxal-phosphate dependent enzyme ID12_05470 PF00425 chorismate binding enzyme ID12_05470 PF04715 Anthranilate synthase component I, N terminal region ID12_05475 PF00117 Glutamine amidotransferase class-I ID12_05480 PF01063 Aminotransferase class IV ID12_05485 PF00809 Pterin binding enzyme ID12_05490 PF02152 Dihydroneopterin aldolase ID12_05495 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ID12_05500 PF01381 Helix-turn-helix ID12_05505 PF01207 Dihydrouridine synthase (Dus) ID12_05510 PF00152 tRNA synthetases class II (D, K and N) ID12_05510 PF01336 OB-fold nucleic acid binding domain ID12_05590 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) ID12_05595 PF02151 UvrB/uvrC motif ID12_05600 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain ID12_05605 PF00004 ATPase family associated with various cellular activities (AAA) ID12_05605 PF02151 UvrB/uvrC motif ID12_05605 PF02861 Clp amino terminal domain ID12_05605 PF07724 AAA domain (Cdc48 subfamily) ID12_05605 PF10431 C-terminal, D2-small domain, of ClpB protein ID12_05610 PF13481 AAA domain ID12_05610 PF13541 Subunit ChlI of Mg-chelatase ID12_05615 PF02457 DisA bacterial checkpoint controller nucleotide-binding ID12_05615 PF10635 DisA bacterial checkpoint controller linker region ID12_05625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ID12_05630 PF02542 YgbB family ID12_05635 PF00749 tRNA synthetases class I (E and Q), catalytic domain ID12_05640 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_05640 PF06426 Serine acetyltransferase, N-terminal ID12_05645 PF01406 tRNA synthetases class I (C) catalytic domain ID12_05645 PF09190 DALR domain ID12_05650 PF00636 Ribonuclease III domain ID12_05655 PF00588 SpoU rRNA Methylase family ID12_05655 PF08032 RNA 2'-O ribose methyltransferase substrate binding ID12_05660 PF05991 ID12_05660 ID12_05665 PF04542 Sigma-70 region 2 ID12_05665 PF08281 Sigma-70, region 4 ID12_05670 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ID12_05675 PF00467 KOW motif ID12_05675 PF02357 Transcription termination factor nusG ID12_05680 PF00298 Ribosomal protein L11, RNA binding domain ID12_05680 PF03946 Ribosomal protein L11, N-terminal domain ID12_05685 PF00687 Ribosomal protein L1p/L10e family ID12_05690 PF00466 Ribosomal protein L10 ID12_05695 PF00542 Ribosomal protein L7/L12 C-terminal domain ID12_05695 PF16320 ID12_05695 ID12_05700 PF05175 Methyltransferase small domain ID12_05705 PF00562 RNA polymerase Rpb2, domain 6 ID12_05705 PF04560 RNA polymerase Rpb2, domain 7 ID12_05705 PF04561 RNA polymerase Rpb2, domain 2 ID12_05705 PF04563 RNA polymerase beta subunit ID12_05705 PF04565 RNA polymerase Rpb2, domain 3 ID12_05705 PF10385 RNA polymerase beta subunit external 1 domain ID12_05710 PF00623 RNA polymerase Rpb1, domain 2 ID12_05710 PF04983 RNA polymerase Rpb1, domain 3 ID12_05710 PF04997 RNA polymerase Rpb1, domain 1 ID12_05710 PF04998 RNA polymerase Rpb1, domain 5 ID12_05710 PF05000 RNA polymerase Rpb1, domain 4 ID12_05715 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ID12_05720 PF00164 Ribosomal protein S12/S23 ID12_05725 PF00177 Ribosomal protein S7p/S5e ID12_05730 PF00009 Elongation factor Tu GTP binding domain ID12_05730 PF00679 Elongation factor G C-terminus ID12_05730 PF03144 Elongation factor Tu domain 2 ID12_05730 PF03764 Elongation factor G, domain IV ID12_05730 PF14492 Elongation Factor G, domain II ID12_05735 PF00009 Elongation factor Tu GTP binding domain ID12_05735 PF03143 Elongation factor Tu C-terminal domain ID12_05735 PF03144 Elongation factor Tu domain 2 ID12_05740 PF00561 alpha/beta hydrolase fold ID12_05745 PF00338 Ribosomal protein S10p/S20e ID12_05750 PF00297 Ribosomal protein L3 ID12_05755 PF00573 Ribosomal protein L4/L1 family ID12_05760 PF00276 Ribosomal protein L23 ID12_05765 PF00181 Ribosomal Proteins L2, RNA binding domain ID12_05765 PF03947 Ribosomal Proteins L2, C-terminal domain ID12_05770 PF00203 Ribosomal protein S19 ID12_05775 PF00237 Ribosomal protein L22p/L17e ID12_05780 PF00189 Ribosomal protein S3, C-terminal domain ID12_05780 PF07650 KH domain ID12_05785 PF00252 Ribosomal protein L16p/L10e ID12_05790 PF00831 Ribosomal L29 protein ID12_05795 PF00366 Ribosomal protein S17 ID12_05800 PF00238 Ribosomal protein L14p/L23e ID12_05805 PF00467 KOW motif ID12_05805 PF17136 ID12_05805 ID12_05810 PF00281 Ribosomal protein L5 ID12_05810 PF00673 ribosomal L5P family C-terminus ID12_05815 PF00253 Ribosomal protein S14p/S29e ID12_05820 PF00410 Ribosomal protein S8 ID12_05825 PF00347 Ribosomal protein L6 ID12_05830 PF00861 Ribosomal L18p/L5e family ID12_05835 PF00333 Ribosomal protein S5, N-terminal domain ID12_05835 PF03719 Ribosomal protein S5, C-terminal domain ID12_05840 PF00327 Ribosomal protein L30p/L7e ID12_05845 PF00828 Ribosomal protein L18e/L15 ID12_05850 PF00344 SecY translocase ID12_05855 PF00406 Adenylate kinase ID12_05855 PF05191 Adenylate kinase, active site lid ID12_05860 PF00557 Metallopeptidase family M24 ID12_05865 PF01176 Translation initiation factor 1A / IF-1 ID12_05870 PF00444 Ribosomal protein L36 ID12_05875 PF00416 Ribosomal protein S13/S18 ID12_05880 PF00411 Ribosomal protein S11 ID12_05885 PF01000 RNA polymerase Rpb3/RpoA insert domain ID12_05885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ID12_05885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ID12_05890 PF01196 Ribosomal protein L17 ID12_05895 PF00005 ABC transporter ID12_05900 PF00005 ABC transporter ID12_05905 PF02361 Cobalt transport protein ID12_05910 PF01416 tRNA pseudouridine synthase ID12_05915 PF00572 Ribosomal protein L13 ID12_05920 PF00380 Ribosomal protein S9/S16 ID12_05925 PF13302 Acetyltransferase (GNAT) domain ID12_05930 PF04909 Amidohydrolase ID12_05935 PF00583 Acetyltransferase (GNAT) family ID12_05940 PF16107 ID12_05940 ID12_05945 PF10730 ID12_05945 ID12_05950 PF01520 N-acetylmuramoyl-L-alanine amidase ID12_05955 PF10609 ParA/MinD ATPase like ID12_05965 PF14089 ID12_05965 ID12_05970 PF01522 Polysaccharide deacetylase ID12_06000 PF00916 ID12_06000 ID12_06000 PF01740 STAS domain ID12_06005 PF01758 Sodium Bile acid symporter family ID12_06010 PF07075 Protein of unknown function (DUF1343) ID12_06015 PF00933 Glycosyl hydrolase family 3 N terminal domain ID12_06015 PF01915 Glycosyl hydrolase family 3 C-terminal domain ID12_06020 PF00144 Beta-lactamase ID12_06025 PF00367 phosphotransferase system, EIIB ID12_06025 PF02378 Phosphotransferase system, EIIC ID12_06030 PF01380 SIS domain ID12_06030 PF01418 Helix-turn-helix domain, rpiR family ID12_06035 PF13580 SIS domain ID12_06065 PF00491 Arginase family ID12_06070 PF04542 Sigma-70 region 2 ID12_06070 PF08281 Sigma-70, region 4 ID12_06075 PF13490 Putative zinc-finger ID12_06080 PF02457 DisA bacterial checkpoint controller nucleotide-binding ID12_06085 PF07949 YbbR-like protein ID12_06090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ID12_06090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ID12_06090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ID12_06090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ID12_06095 PF01380 SIS domain ID12_06095 PF13522 Glutamine amidotransferase domain ID12_06105 PF09966 Uncharacterized protein conserved in bacteria (DUF2200) ID12_06110 PF13396 ID12_06110 ID12_06115 PF00005 ABC transporter ID12_06115 PF13732 ID12_06115 ID12_06120 PF12679 ID12_06120 ID12_06125 PF00005 ABC transporter ID12_06135 PF03551 Transcriptional regulator PadR-like family ID12_06140 PF01042 Endoribonuclease L-PSP ID12_06155 PF03703 ID12_06155 ID12_06160 PF00005 ABC transporter ID12_06160 PF13732 ID12_06160 ID12_06165 PF12679 ID12_06165 ID12_06170 PF13273 ID12_06170 ID12_06175 PF09862 ID12_06175 ID12_06185 PF11758 ID12_06185 ID12_06190 PF11758 ID12_06190 ID12_06195 PF11758 ID12_06195 ID12_06200 PF11758 ID12_06200 ID12_06205 PF11758 ID12_06205 ID12_06210 PF04235 ID12_06210 ID12_06215 PF00392 Bacterial regulatory proteins, gntR family ID12_06220 PF00005 ABC transporter ID12_06225 PF13346 ID12_06225 ID12_06230 PF01381 Helix-turn-helix ID12_06240 PF00561 alpha/beta hydrolase fold ID12_06245 PF12833 Helix-turn-helix domain ID12_06250 PF00440 Bacterial regulatory proteins, tetR family ID12_06260 PF13349 ID12_06260 ID12_06270 PF00324 Amino acid permease ID12_06275 PF03009 Glycerophosphoryl diester phosphodiesterase family ID12_06280 PF07690 Major Facilitator Superfamily ID12_06285 PF13624 SurA N-terminal domain ID12_06290 PF03190 Protein of unknown function, DUF255 ID12_06290 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) ID12_06295 PF00109 Beta-ketoacyl synthase, N-terminal domain ID12_06295 PF02801 Beta-ketoacyl synthase, C-terminal domain ID12_06300 PF13560 Helix-turn-helix domain ID12_06310 PF12840 Helix-turn-helix domain ID12_06315 PF04657 ID12_06315 ID12_06320 PF04657 ID12_06320 ID12_06325 PF02583 Metal-sensitive transcriptional repressor ID12_06330 PF13686 DsrE/DsrF/DrsH-like family ID12_06335 PF00581 Rhodanese-like domain ID12_06340 PF00581 Rhodanese-like domain ID12_06340 PF01206 Sulfurtransferase TusA ID12_06345 PF00581 Rhodanese-like domain ID12_06345 PF00753 Metallo-beta-lactamase superfamily ID12_06350 PF01206 Sulfurtransferase TusA ID12_06355 PF01925 ID12_06355 ID12_06365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ID12_06365 PF03129 Anticodon binding domain ID12_06365 PF09180 Prolyl-tRNA synthetase, C-terminal ID12_06370 PF07690 Major Facilitator Superfamily ID12_06375 PF01575 MaoC like domain ID12_06380 PF13673 Acetyltransferase (GNAT) domain ID12_06385 PF01047 MarR family ID12_06395 PF04463 ID12_06395 ID12_06400 PF00248 Aldo/keto reductase family ID12_06405 PF00465 Iron-containing alcohol dehydrogenase ID12_06410 PF00581 Rhodanese-like domain ID12_06410 PF12368 ID12_06410 ID12_06415 PF13520 Amino acid permease ID12_06425 PF00874 PRD domain ID12_06425 PF03123 CAT RNA binding domain ID12_06430 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ID12_06430 PF00367 phosphotransferase system, EIIB ID12_06430 PF02378 Phosphotransferase system, EIIC ID12_06435 PF00232 Glycosyl hydrolase family 1 ID12_06450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_06450 PF00874 PRD domain ID12_06450 PF05043 Mga helix-turn-helix domain ID12_06450 PF08279 HTH domain ID12_06455 PF00480 ROK family ID12_06460 PF01074 Glycosyl hydrolases family 38 N-terminal domain ID12_06460 PF07748 Glycosyl hydrolases family 38 C-terminal domain ID12_06460 PF09261 Alpha mannosidase, middle domain ID12_06465 PF02378 Phosphotransferase system, EIIC ID12_06470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_06475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_06480 PF00082 Subtilase family ID12_06495 PF00324 Amino acid permease ID12_06500 PF02574 Homocysteine S-methyltransferase ID12_06505 PF02588 ID12_06505 ID12_06505 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ID12_06510 PF03551 Transcriptional regulator PadR-like family ID12_06515 PF08006 ID12_06515 ID12_06525 PF07690 Major Facilitator Superfamily ID12_06530 PF00583 Acetyltransferase (GNAT) family ID12_06540 PF04167 Protein of unknown function (DUF402) ID12_06545 PF00082 Subtilase family ID12_06550 PF01425 Amidase ID12_06555 PF00440 Bacterial regulatory proteins, tetR family ID12_06560 PF07883 Cupin domain ID12_06565 PF00107 Zinc-binding dehydrogenase ID12_06565 PF08240 Alcohol dehydrogenase GroES-like domain ID12_06570 PF01047 MarR family ID12_06575 PF00501 AMP-binding enzyme ID12_06575 PF13193 AMP-binding enzyme C-terminal domain ID12_06580 PF13520 Amino acid permease ID12_06585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_06590 PF00561 alpha/beta hydrolase fold ID12_06595 PF01235 ID12_06595 ID12_06600 PF04960 Glutaminase ID12_06605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_06610 PF00072 Response regulator receiver domain ID12_06610 PF08664 ID12_06610 ID12_06615 PF02810 SEC-C motif ID12_06615 PF05225 helix-turn-helix, Psq domain ID12_06620 PF11611 Domain of unknown function (DUF4352) ID12_06620 PF17118 ID12_06620 ID12_06625 PF00248 Aldo/keto reductase family ID12_06630 PF14501 GHKL domain ID12_06635 PF00072 Response regulator receiver domain ID12_06635 PF04397 LytTr DNA-binding domain ID12_06640 PF00005 ABC transporter ID12_06645 PF12679 ID12_06645 ID12_06660 PF11611 Domain of unknown function (DUF4352) ID12_06660 PF17118 ID12_06660 ID12_06665 PF07486 Cell Wall Hydrolase ID12_06670 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_06675 PF01757 ID12_06675 ID12_06680 PF00296 Luciferase-like monooxygenase ID12_06685 PF02342 TerD domain ID12_06690 PF02342 TerD domain ID12_06695 PF02342 TerD domain ID12_06700 PF03741 ID12_06700 ID12_06705 PF15617 ID12_06705 ID12_06710 PF12500 ID12_06710 ID12_06710 PF15609 ID12_06710 ID12_06715 PF11202 ID12_06715 ID12_06715 PF15608 ID12_06715 ID12_06720 PF05116 Sucrose-6F-phosphate phosphohydrolase ID12_06725 PF14266 ID12_06725 ID12_06730 PF05816 ID12_06730 ID12_06735 PF00005 ABC transporter ID12_06740 PF00528 Binding-protein-dependent transport system inner membrane component ID12_06745 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ID12_06750 PF12697 Alpha/beta hydrolase family ID12_06755 PF00106 short chain dehydrogenase ID12_06760 PF01546 Peptidase family M20/M25/M40 ID12_06760 PF07687 Peptidase dimerisation domain ID12_06765 PF03606 ID12_06765 ID12_06770 PF00056 lactate/malate dehydrogenase, NAD binding domain ID12_06770 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ID12_06775 PF02652 ID12_06775 ID12_06780 PF00356 Bacterial regulatory proteins, lacI family ID12_06780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ID12_06785 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ID12_06790 PF05116 Sucrose-6F-phosphate phosphohydrolase ID12_06795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ID12_06795 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ID12_06800 PF07690 Major Facilitator Superfamily ID12_06805 PF01810 ID12_06805 ID12_06810 PF17094 ID12_06810 ID12_06815 PF10852 ID12_06815 ID12_06825 PF08892 ID12_06825 ID12_06830 PF00324 Amino acid permease ID12_06835 PF09347 Domain of unknown function (DUF1989) ID12_06840 PF02540 NAD synthase ID12_06865 PF00285 Citrate synthase ID12_06870 PF00171 Aldehyde dehydrogenase family ID12_06875 PF01487 Type I 3-dehydroquinase ID12_06880 PF00205 Thiamine pyrophosphate enzyme, central domain ID12_06880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ID12_06880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ID12_06885 PF07883 Cupin domain ID12_06890 PF02515 CoA-transferase family III ID12_06895 PF07690 Major Facilitator Superfamily ID12_06905 PF01614 Bacterial transcriptional regulator ID12_06905 PF09339 IclR helix-turn-helix domain ID12_06910 PF01202 Shikimate kinase ID12_06915 PF13847 Methyltransferase domain ID12_06920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_06920 PF03466 LysR substrate binding domain ID12_06925 PF00795 Carbon-nitrogen hydrolase ID12_06930 PF05448 Acetyl xylan esterase (AXE1) ID12_06940 PF10127 ID12_06940 ID12_06945 PF01619 Proline dehydrogenase ID12_06950 PF00171 Aldehyde dehydrogenase family ID12_06955 PF13556 PucR C-terminal helix-turn-helix domain ID12_06960 PF02040 ID12_06960 ID12_06965 PF00528 Binding-protein-dependent transport system inner membrane component ID12_06970 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_06975 PF10925 ID12_06975 ID12_06980 PF13483 Beta-lactamase superfamily domain ID12_06985 PF01037 AsnC family ID12_06985 PF13412 Winged helix-turn-helix DNA-binding ID12_06990 PF02522 Aminoglycoside 3-N-acetyltransferase ID12_06995 PF11033 Competence protein J (ComJ) ID12_07000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_07000 PF00672 HAMP domain ID12_07000 PF17202 ID12_07000 ID12_07005 PF14040 ID12_07005 ID12_07015 PF01968 Hydantoinase/oxoprolinase ID12_07015 PF05378 ID12_07015 ID12_07020 PF02538 ID12_07020 ID12_07025 PF13416 Bacterial extracellular solute-binding protein ID12_07030 PF00005 ABC transporter ID12_07030 PF08402 TOBE domain ID12_07035 PF00528 Binding-protein-dependent transport system inner membrane component ID12_07040 PF00528 Binding-protein-dependent transport system inner membrane component ID12_07045 PF00501 AMP-binding enzyme ID12_07045 PF00550 Phosphopantetheine attachment site ID12_07045 PF00668 Condensation domain ID12_07045 PF13193 AMP-binding enzyme C-terminal domain ID12_07050 PF00501 AMP-binding enzyme ID12_07050 PF00550 Phosphopantetheine attachment site ID12_07050 PF00668 Condensation domain ID12_07050 PF13193 AMP-binding enzyme C-terminal domain ID12_07055 PF00501 AMP-binding enzyme ID12_07055 PF00550 Phosphopantetheine attachment site ID12_07055 PF00668 Condensation domain ID12_07055 PF00975 Thioesterase domain ID12_07055 PF13193 AMP-binding enzyme C-terminal domain ID12_07060 PF00501 AMP-binding enzyme ID12_07060 PF00550 Phosphopantetheine attachment site ID12_07060 PF00668 Condensation domain ID12_07060 PF08659 KR domain ID12_07060 PF13193 AMP-binding enzyme C-terminal domain ID12_07065 PF00501 AMP-binding enzyme ID12_07065 PF00550 Phosphopantetheine attachment site ID12_07065 PF00668 Condensation domain ID12_07065 PF00975 Thioesterase domain ID12_07065 PF08659 KR domain ID12_07065 PF13193 AMP-binding enzyme C-terminal domain ID12_07070 PF00975 Thioesterase domain ID12_07080 PF01944 ID12_07080 ID12_07085 PF00005 ABC transporter ID12_07100 PF00892 EamA-like transporter family ID12_07105 PF00155 Aminotransferase class I and II ID12_07105 PF00392 Bacterial regulatory proteins, gntR family ID12_07110 PF01648 4'-phosphopantetheinyl transferase superfamily ID12_07115 PF06445 GyrI-like small molecule binding domain ID12_07115 PF12833 Helix-turn-helix domain ID12_07125 PF02588 ID12_07125 ID12_07130 PF00005 ABC transporter ID12_07135 PF00528 Binding-protein-dependent transport system inner membrane component ID12_07140 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_07145 PF01738 Dienelactone hydrolase family ID12_07150 PF00324 Amino acid permease ID12_07155 PF00854 POT family ID12_07160 PF12708 Pectate lyase superfamily protein ID12_07160 PF13229 Right handed beta helix region ID12_07165 PF00296 Luciferase-like monooxygenase ID12_07170 PF00583 Acetyltransferase (GNAT) family ID12_07175 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_07180 PF00528 Binding-protein-dependent transport system inner membrane component ID12_07185 PF00005 ABC transporter ID12_07190 PF01546 Peptidase family M20/M25/M40 ID12_07190 PF07687 Peptidase dimerisation domain ID12_07195 PF03972 MmgE/PrpD family ID12_07200 PF00072 Response regulator receiver domain ID12_07200 PF00486 Transcriptional regulatory protein, C terminal ID12_07205 PF00512 His Kinase A (phospho-acceptor) domain ID12_07205 PF00672 HAMP domain ID12_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_07210 PF01740 STAS domain ID12_07210 PF13185 GAF domain ID12_07215 PF00696 Amino acid kinase family ID12_07215 PF13840 ACT domain ID12_07220 PF07690 Major Facilitator Superfamily ID12_07225 PF00440 Bacterial regulatory proteins, tetR family ID12_07235 PF12840 Helix-turn-helix domain ID12_07240 PF16157 ID12_07240 ID12_07245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_07250 PF00155 Aminotransferase class I and II ID12_07250 PF00392 Bacterial regulatory proteins, gntR family ID12_07255 PF00202 Aminotransferase class-III ID12_07260 PF13520 Amino acid permease ID12_07265 PF00171 Aldehyde dehydrogenase family ID12_07270 PF02525 Flavodoxin-like fold ID12_07275 PF07987 Domain of unkown function (DUF1775) ID12_07280 PF04234 CopC domain ID12_07280 PF05425 ID12_07280 ID12_07285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_07285 PF02378 Phosphotransferase system, EIIC ID12_07290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_07295 PF01232 Mannitol dehydrogenase Rossmann domain ID12_07295 PF08125 Mannitol dehydrogenase C-terminal domain ID12_07300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_07300 PF00672 HAMP domain ID12_07300 PF17200 ID12_07300 ID12_07305 PF03116 ID12_07305 ID12_07310 PF02424 ApbE family ID12_07315 PF04205 FMN-binding domain ID12_07320 PF01042 Endoribonuclease L-PSP ID12_07325 PF10852 ID12_07325 ID12_07330 PF17247 ID12_07330 ID12_07335 PF12681 Glyoxalase-like domain ID12_07340 PF05901 ID12_07340 ID12_07345 PF08282 haloacid dehalogenase-like hydrolase ID12_07350 PF03746 LamB/YcsF family ID12_07355 PF01566 ID12_07355 ID12_07360 PF07286 Protein of unknown function (DUF1445) ID12_07365 PF02682 Allophanate hydrolase subunit 1 ID12_07370 PF02626 Allophanate hydrolase subunit 2 ID12_07375 PF01614 Bacterial transcriptional regulator ID12_07375 PF09339 IclR helix-turn-helix domain ID12_07380 PF02525 Flavodoxin-like fold ID12_07390 PF13472 GDSL-like Lipase/Acylhydrolase family ID12_07395 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase ID12_07400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_07400 PF00874 PRD domain ID12_07400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_07400 PF08279 HTH domain ID12_07405 PF13649 Methyltransferase domain ID12_07410 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_07420 PF16242 ID12_07420 ID12_07440 PF12823 ID12_07440 ID12_07445 PF00392 Bacterial regulatory proteins, gntR family ID12_07445 PF07729 FCD domain ID12_07460 PF00180 Isocitrate/isopropylmalate dehydrogenase ID12_07465 PF01131 DNA topoisomerase ID12_07465 PF01751 Toprim domain ID12_07470 PF01270 Glycosyl hydrolases family 8 ID12_07475 PF00990 GGDEF domain ID12_07480 PF10096 ID12_07480 ID12_07485 PF13641 Glycosyltransferase like family 2 ID12_07490 PF03170 Bacterial cellulose synthase subunit ID12_07495 PF13520 Amino acid permease ID12_07500 PF00205 Thiamine pyrophosphate enzyme, central domain ID12_07500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ID12_07500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ID12_07545 PF13302 Acetyltransferase (GNAT) domain ID12_07550 PF01566 ID12_07550 ID12_07555 PF04226 ID12_07555 ID12_07560 PF12787 ID12_07560 ID12_07565 PF03480 Bacterial extracellular solute-binding protein, family 7 ID12_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_07570 PF13426 PAS domain ID12_07570 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ID12_07570 PF17203 ID12_07570 ID12_07575 PF00072 Response regulator receiver domain ID12_07580 PF00375 Sodium:dicarboxylate symporter family ID12_07585 PF01594 ID12_07585 ID12_07590 PF00375 Sodium:dicarboxylate symporter family ID12_07595 PF00005 ABC transporter ID12_07600 PF12730 ID12_07600 ID12_07615 PF00085 Thioredoxin ID12_07620 PF01820 D-ala D-ala ligase N-terminus ID12_07620 PF07478 D-ala D-ala ligase C-terminus ID12_07625 PF01225 Mur ligase family, catalytic domain ID12_07625 PF02875 Mur ligase family, glutamate ligase domain ID12_07625 PF08245 Mur ligase middle domain ID12_07630 PF12146 Putative lysophospholipase ID12_07640 PF00270 DEAD/DEAH box helicase ID12_07640 PF00271 Helicase conserved C-terminal domain ID12_07645 PF03703 ID12_07645 ID12_07650 PF03703 ID12_07650 ID12_07655 PF01694 Rhomboid family ID12_07660 PF01648 4'-phosphopantetheinyl transferase superfamily ID12_07665 PF14285 ID12_07665 ID12_07670 PF00842 Alanine racemase, C-terminal domain ID12_07670 PF01168 Alanine racemase, N-terminal domain ID12_07680 PF02452 PemK-like protein ID12_07685 PF01740 STAS domain ID12_07685 PF08678 Rsbr N terminal ID12_07690 PF01740 STAS domain ID12_07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_07700 PF07228 Stage II sporulation protein E (SpoIIE) ID12_07700 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain ID12_07705 PF01740 STAS domain ID12_07710 PF13581 Histidine kinase-like ATPase domain ID12_07715 PF04539 Sigma-70 region 3 ID12_07715 PF04542 Sigma-70 region 2 ID12_07715 PF04545 Sigma-70, region 4 ID12_07720 PF07228 Stage II sporulation protein E (SpoIIE) ID12_07725 PF00575 S1 RNA binding domain ID12_07725 PF09371 Tex-like protein N-terminal domain ID12_07725 PF12836 Helix-hairpin-helix motif ID12_07725 PF16921 ID12_07725 ID12_07735 PF10263 ID12_07735 ID12_07735 PF17283 ID12_07735 ID12_07775 PF13242 HAD-hyrolase-like ID12_07785 PF13302 Acetyltransferase (GNAT) domain ID12_07790 PF00561 alpha/beta hydrolase fold ID12_07800 PF00313 'Cold-shock' DNA-binding domain ID12_07805 PF02559 CarD-like/TRCF domain ID12_07810 PF00107 Zinc-binding dehydrogenase ID12_07810 PF08240 Alcohol dehydrogenase GroES-like domain ID12_07815 PF13411 MerR HTH family regulatory protein ID12_07820 PF00722 Glycosyl hydrolases family 16 ID12_07825 PF00440 Bacterial regulatory proteins, tetR family ID12_07830 PF07690 Major Facilitator Superfamily ID12_07840 PF07859 alpha/beta hydrolase fold ID12_07845 PF04237 YjbR ID12_07850 PF00106 short chain dehydrogenase ID12_07855 PF17094 ID12_07855 ID12_07860 PF00710 Asparaginase ID12_07865 PF00561 alpha/beta hydrolase fold ID12_07870 PF01047 MarR family ID12_07875 PF00440 Bacterial regulatory proteins, tetR family ID12_07875 PF08360 QacR-like protein, C-terminal region ID12_07880 PF07690 Major Facilitator Superfamily ID12_07890 PF04397 LytTr DNA-binding domain ID12_07895 PF12746 GNAT acetyltransferase ID12_07900 PF00583 Acetyltransferase (GNAT) family ID12_07905 PF14150 ID12_07905 ID12_07910 PF13302 Acetyltransferase (GNAT) domain ID12_07915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_07920 PF00583 Acetyltransferase (GNAT) family ID12_07925 PF14278 ID12_07925 ID12_07930 PF01872 RibD C-terminal domain ID12_07935 PF01047 MarR family ID12_07940 PF00881 Nitroreductase family ID12_07945 PF00296 Luciferase-like monooxygenase ID12_07960 PF01381 Helix-turn-helix ID12_07960 PF07883 Cupin domain ID12_07965 PF01810 ID12_07965 ID12_07970 PF13420 Acetyltransferase (GNAT) domain ID12_07975 PF05532 CsbD-like ID12_07980 PF01596 O-methyltransferase ID12_07985 PF05437 ID12_07985 ID12_07990 PF03591 ID12_07990 ID12_07995 PF00892 EamA-like transporter family ID12_08000 PF02016 LD-carboxypeptidase ID12_08005 PF00375 Sodium:dicarboxylate symporter family ID12_08050 PF00586 AIR synthase related protein, N-terminal domain ID12_08050 PF02769 AIR synthase related protein, C-terminal domain ID12_08055 PF02367 Uncharacterised P-loop hydrolase UPF0079 ID12_08060 PF00814 Glycoprotease family ID12_08065 PF00583 Acetyltransferase (GNAT) family ID12_08070 PF00814 Glycoprotease family ID12_08075 PF00005 ABC transporter ID12_08075 PF12848 ABC transporter ID12_08075 PF16326 ID12_08075 ID12_08080 PF01967 MoaC family ID12_08085 PF02629 CoA binding domain ID12_08085 PF06971 Putative DNA-binding protein N-terminus ID12_08090 PF02416 mttA/Hcf106 family ID12_08095 PF00902 Sec-independent protein translocase protein (TatC) ID12_08100 PF00293 NUDIX domain ID12_08105 PF14146 ID12_08105 ID12_08110 PF02517 CAAX protease self-immunity ID12_08115 PF00166 Chaperonin 10 Kd subunit ID12_08120 PF00118 TCP-1/cpn60 chaperonin family ID12_08125 PF01047 MarR family ID12_08130 PF04299 Putative FMN-binding domain ID12_08135 PF02557 D-alanyl-D-alanine carboxypeptidase ID12_08135 PF08239 Bacterial SH3 domain ID12_08145 PF13273 ID12_08145 ID12_08160 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel ID12_08170 PF02627 Carboxymuconolactone decarboxylase family ID12_08175 PF00394 Multicopper oxidase ID12_08175 PF07731 Multicopper oxidase ID12_08175 PF07732 Multicopper oxidase ID12_08180 PF00324 Amino acid permease ID12_08185 PF01545 Cation efflux family ID12_08185 PF16916 ID12_08185 ID12_08190 PF07726 ATPase family associated with various cellular activities (AAA) ID12_08195 PF01882 ID12_08195 ID12_08200 PF01841 Transglutaminase-like superfamily ID12_08200 PF13559 ID12_08200 ID12_08205 PF00117 Glutamine amidotransferase class-I ID12_08205 PF00958 GMP synthase C terminal domain ID12_08205 PF02540 NAD synthase ID12_08220 PF13302 Acetyltransferase (GNAT) domain ID12_08235 PF04542 Sigma-70 region 2 ID12_08235 PF08281 Sigma-70, region 4 ID12_08240 PF13786 Domain of unknown function (DUF4179) ID12_08245 PF07690 Major Facilitator Superfamily ID12_08250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_08250 PF03466 LysR substrate binding domain ID12_08255 PF00860 Permease family ID12_08265 PF10055 ID12_08265 ID12_08275 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ID12_08280 PF14044 ID12_08280 ID12_08285 PF00731 AIR carboxylase ID12_08290 PF02222 ATP-grasp domain ID12_08295 PF00206 Lyase ID12_08295 PF10397 Adenylosuccinate lyase C-terminus ID12_08300 PF01259 SAICAR synthetase ID12_08305 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase ID12_08310 PF13507 CobB/CobQ-like glutamine amidotransferase domain ID12_08315 PF00586 AIR synthase related protein, N-terminal domain ID12_08315 PF02769 AIR synthase related protein, C-terminal domain ID12_08320 PF00156 Phosphoribosyl transferase domain ID12_08320 PF13522 Glutamine amidotransferase domain ID12_08325 PF00586 AIR synthase related protein, N-terminal domain ID12_08325 PF02769 AIR synthase related protein, C-terminal domain ID12_08330 PF00551 Formyl transferase ID12_08335 PF01808 AICARFT/IMPCHase bienzyme ID12_08335 PF02142 MGS-like domain ID12_08340 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ID12_08340 PF02843 Phosphoribosylglycinamide synthetase, C domain ID12_08340 PF02844 Phosphoribosylglycinamide synthetase, N domain ID12_08350 PF13527 Acetyltransferase (GNAT) domain ID12_08355 PF07905 ID12_08355 ID12_08355 PF13556 PucR C-terminal helix-turn-helix domain ID12_08360 PF00202 Aminotransferase class-III ID12_08365 PF01144 Coenzyme A transferase ID12_08370 PF01144 Coenzyme A transferase ID12_08375 PF01546 Peptidase family M20/M25/M40 ID12_08375 PF07687 Peptidase dimerisation domain ID12_08380 PF11127 Protein of unknown function (DUF2892) ID12_08385 PF01979 Amidohydrolase family ID12_08385 PF13382 Adenine deaminase C-terminal domain ID12_08390 PF01371 Trp repressor protein ID12_08395 PF13079 ID12_08395 ID12_08400 PF01645 Conserved region in glutamate synthase ID12_08410 PF10049 ID12_08410 ID12_08415 PF01884 PcrB family ID12_08420 PF00580 UvrD/REP helicase N-terminal domain ID12_08420 PF13361 UvrD-like helicase C-terminal domain ID12_08425 PF00533 BRCA1 C Terminus (BRCT) domain ID12_08425 PF01653 NAD-dependent DNA ligase adenylation domain ID12_08425 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ID12_08425 PF03120 NAD-dependent DNA ligase OB-fold domain ID12_08425 PF12826 Helix-hairpin-helix motif ID12_08425 PF14520 Helix-hairpin-helix domain ID12_08430 PF07537 CamS sex pheromone cAM373 precursor ID12_08440 PF01636 Phosphotransferase enzyme family ID12_08445 PF02308 ID12_08445 ID12_08450 PF00474 Sodium:solute symporter family ID12_08455 PF02686 Glu-tRNAGln amidotransferase C subunit ID12_08460 PF01425 Amidase ID12_08465 PF02637 GatB domain ID12_08465 PF02934 GatB/GatE catalytic domain ID12_08470 PF00440 Bacterial regulatory proteins, tetR family ID12_08475 PF00873 AcrB/AcrD/AcrF family ID12_08480 PF01156 Inosine-uridine preferring nucleoside hydrolase ID12_08485 PF00781 Diacylglycerol kinase catalytic domain ID12_08490 PF01938 TRAM domain ID12_08490 PF05958 tRNA (Uracil-5-)-methyltransferase ID12_08495 PF13304 AAA domain ID12_08495 PF14491 ID12_08495 ID12_08505 PF01207 Dihydrouridine synthase (Dus) ID12_08520 PF02082 Transcriptional regulator ID12_08525 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_08535 PF13021 ID12_08535 ID12_08540 PF02056 Family 4 glycosyl hydrolase ID12_08540 PF11975 Family 4 glycosyl hydrolase C-terminal domain ID12_08545 PF01380 SIS domain ID12_08545 PF01418 Helix-turn-helix domain, rpiR family ID12_08550 PF07690 Major Facilitator Superfamily ID12_08555 PF04073 Aminoacyl-tRNA editing domain ID12_08560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_08560 PF03466 LysR substrate binding domain ID12_08565 PF07690 Major Facilitator Superfamily ID12_08570 PF13037 ID12_08570 ID12_08570 PF13039 ID12_08570 ID12_08580 PF00483 Nucleotidyl transferase ID12_08585 PF16363 ID12_08585 ID12_08590 PF03407 ID12_08590 ID12_08595 PF00535 Glycosyl transferase family 2 ID12_08600 PF03407 ID12_08600 ID12_08605 PF07690 Major Facilitator Superfamily ID12_08615 PF00905 Penicillin binding protein transpeptidase domain ID12_08615 PF03717 Penicillin-binding Protein dimerisation domain ID12_08615 PF05223 NTF2-like N-terminal transpeptidase domain ID12_08620 PF00939 Sodium:sulfate symporter transmembrane region ID12_08635 PF00011 Hsp20/alpha crystallin family ID12_08650 PF13520 Amino acid permease ID12_08655 PF00535 Glycosyl transferase family 2 ID12_08660 PF00005 ABC transporter ID12_08660 PF12848 ABC transporter ID12_08660 PF16326 ID12_08660 ID12_08665 PF02649 Type I GTP cyclohydrolase folE2 ID12_08670 PF13411 MerR HTH family regulatory protein ID12_08675 PF07690 Major Facilitator Superfamily ID12_08680 PF00005 ABC transporter ID12_08680 PF12848 ABC transporter ID12_08685 PF00270 DEAD/DEAH box helicase ID12_08685 PF00271 Helicase conserved C-terminal domain ID12_08690 PF00107 Zinc-binding dehydrogenase ID12_08690 PF16884 ID12_08690 ID12_08695 PF11486 Protein of unknown function (DUF3212) ID12_08700 PF11181 ID12_08700 ID12_08705 PF13489 Methyltransferase domain ID12_08715 PF00925 GTP cyclohydrolase II ID12_08720 PF03781 Sulfatase-modifying factor enzyme 1 ID12_08725 PF00400 WD domain, G-beta repeat ID12_08730 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ID12_08730 PF01872 RibD C-terminal domain ID12_08740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_08740 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ID12_08740 PF17203 ID12_08740 ID12_08745 PF00072 Response regulator receiver domain ID12_08745 PF08279 HTH domain ID12_08750 PF03401 Tripartite tricarboxylate transporter family receptor ID12_08760 PF03600 Citrate transporter ID12_08765 PF00246 Zinc carboxypeptidase ID12_08770 PF05870 Phenolic acid decarboxylase (PAD) ID12_08775 PF03551 Transcriptional regulator PadR-like family ID12_08775 PF10400 Virulence activator alpha C-term ID12_08780 PF02898 Nitric oxide synthase, oxygenase domain ID12_08790 PF00708 Acylphosphatase ID12_08795 PF03473 MOSC domain ID12_08810 PF00557 Metallopeptidase family M24 ID12_08815 PF00367 phosphotransferase system, EIIB ID12_08815 PF02378 Phosphotransferase system, EIIC ID12_08820 PF05675 ID12_08820 ID12_08825 PF07681 ID12_08825 ID12_08830 PF14172 ID12_08830 ID12_08835 PF00884 Sulfatase ID12_08840 PF00282 Pyridoxal-dependent decarboxylase conserved domain ID12_08845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_08845 PF00672 HAMP domain ID12_08850 PF09350 ID12_08850 ID12_08855 PF00367 phosphotransferase system, EIIB ID12_08855 PF02378 Phosphotransferase system, EIIC ID12_08860 PF00128 Alpha amylase, catalytic domain ID12_08860 PF16657 ID12_08860 ID12_08865 PF00392 Bacterial regulatory proteins, gntR family ID12_08865 PF07702 UTRA domain ID12_08875 PF00149 Calcineurin-like phosphoesterase ID12_08875 PF00746 ID12_08875 ID12_08875 PF02872 5'-nucleotidase, C-terminal domain ID12_08880 PF01965 DJ-1/PfpI family ID12_08885 PF06569 ID12_08885 ID12_08890 PF01235 ID12_08890 ID12_08895 PF01451 Low molecular weight phosphotyrosine protein phosphatase ID12_08905 PF03631 ID12_08905 ID12_08915 PF07690 Major Facilitator Superfamily ID12_08920 PF02566 OsmC-like protein ID12_08925 PF01699 Sodium/calcium exchanger protein ID12_08930 PF14167 ID12_08930 ID12_08935 PF01709 Transcriptional regulator ID12_08945 PF00924 Mechanosensitive ion channel ID12_08950 PF04055 Radical SAM superfamily ID12_08950 PF08756 ID12_08950 ID12_08950 PF13353 4Fe-4S single cluster domain ID12_08960 PF01522 Polysaccharide deacetylase ID12_08965 PF10898 ID12_08965 ID12_08970 PF01544 CorA-like Mg2+ transporter protein ID12_08980 PF00730 HhH-GPD superfamily base excision DNA repair protein ID12_08985 PF01938 TRAM domain ID12_08985 PF05958 tRNA (Uracil-5-)-methyltransferase ID12_08995 PF07252 Protein of unknown function (DUF1433) ID12_09020 PF13411 MerR HTH family regulatory protein ID12_09025 PF07690 Major Facilitator Superfamily ID12_09030 PF08713 DNA alkylation repair enzyme ID12_09035 PF08874 ID12_09035 ID12_09035 PF12395 ID12_09035 ID12_09040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ID12_09040 PF02824 TGS domain ID12_09040 PF03129 Anticodon binding domain ID12_09040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ID12_09065 PF05043 Mga helix-turn-helix domain ID12_09075 PF00746 ID12_09075 ID12_09075 PF05737 Collagen binding domain ID12_09080 PF04203 Sortase family ID12_09100 PF00893 Small Multidrug Resistance protein ID12_09105 PF00893 Small Multidrug Resistance protein ID12_09110 PF00440 Bacterial regulatory proteins, tetR family ID12_09115 PF04892 ID12_09115 ID12_09125 PF13472 GDSL-like Lipase/Acylhydrolase family ID12_09130 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_09135 PF01497 Periplasmic binding protein ID12_09135 PF12833 Helix-turn-helix domain ID12_09140 PF01497 Periplasmic binding protein ID12_09145 PF00005 ABC transporter ID12_09145 PF00664 ABC transporter transmembrane region ID12_09150 PF02694 ID12_09150 ID12_09155 PF04542 Sigma-70 region 2 ID12_09155 PF08281 Sigma-70, region 4 ID12_09160 PF10099 ID12_09160 ID12_09160 PF13490 Putative zinc-finger ID12_09175 PF08240 Alcohol dehydrogenase GroES-like domain ID12_09175 PF13602 Zinc-binding dehydrogenase ID12_09180 PF12867 DinB superfamily ID12_09190 PF01047 MarR family ID12_09195 PF03706 ID12_09195 ID12_09195 PF09924 Uncharacterized conserved protein (DUF2156) ID12_09200 PF14595 Thioredoxin ID12_09205 PF04134 ID12_09205 ID12_09210 PF01381 Helix-turn-helix ID12_09215 PF00881 Nitroreductase family ID12_09220 PF14151 ID12_09220 ID12_09230 PF01370 NAD dependent epimerase/dehydratase family ID12_09230 PF08338 Domain of unknown function (DUF1731) ID12_09235 PF02631 RecX family ID12_09240 PF08838 Protein of unknown function (DUF1811) ID12_09250 PF08176 ID12_09250 ID12_09255 PF14043 ID12_09255 ID12_09260 PF00535 Glycosyl transferase family 2 ID12_09265 PF09586 ID12_09265 ID12_09270 PF01494 FAD binding domain ID12_09275 PF12867 DinB superfamily ID12_09280 PF14184 ID12_09280 ID12_09285 PF00190 Cupin ID12_09295 PF04545 Sigma-70, region 4 ID12_09300 PF12645 ID12_09300 ID12_09305 PF04307 ID12_09305 ID12_09310 PF00633 Helix-hairpin-helix motif ID12_09310 PF00730 HhH-GPD superfamily base excision DNA repair protein ID12_09310 PF14815 NUDIX domain ID12_09320 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_09325 PF04259 ID12_09325 ID12_09330 PF14182 ID12_09330 ID12_09335 PF04167 Protein of unknown function (DUF402) ID12_09340 PF00005 ABC transporter ID12_09340 PF00664 ABC transporter transmembrane region ID12_09345 PF00005 ABC transporter ID12_09345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_09350 PF00005 ABC transporter ID12_09350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_09355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ID12_09360 PF00528 Binding-protein-dependent transport system inner membrane component ID12_09365 PF00528 Binding-protein-dependent transport system inner membrane component ID12_09365 PF12911 ID12_09365 ID12_09370 PF06081 ID12_09370 ID12_09375 PF00202 Aminotransferase class-III ID12_09380 PF00578 AhpC/TSA family ID12_09385 PF01475 Ferric uptake regulator family ID12_09390 PF11023 ID12_09390 ID12_09395 PF14540 Nucleotidyltransferase-like ID12_09500 PF01636 Phosphotransferase enzyme family ID12_09510 PF00300 Histidine phosphatase superfamily (branch 1) ID12_09525 PF09234 Domain of unknown function (DUF1963) ID12_09530 PF10020 ID12_09530 ID12_09535 PF00884 Sulfatase ID12_09540 PF00717 Peptidase S24-like ID12_09545 PF01053 Cys/Met metabolism PLP-dependent enzyme ID12_09550 PF13040 ID12_09550 ID12_09555 PF00005 ABC transporter ID12_09560 PF09084 NMT1/THI5 like ID12_09565 PF00528 Binding-protein-dependent transport system inner membrane component ID12_09570 PF00296 Luciferase-like monooxygenase ID12_09585 PF00005 ABC transporter ID12_09595 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ID12_09620 PF08331 ID12_09620 ID12_09620 PF13484 ID12_09620 ID12_09620 PF13646 HEAT repeats ID12_09625 PF12671 ID12_09625 ID12_09630 PF00588 SpoU rRNA Methylase family ID12_09650 PF06798 ID12_09650 ID12_09650 PF08298 PrkA AAA domain ID12_09655 PF04285 ID12_09655 ID12_09660 PF13437 HlyD family secretion protein ID12_09665 PF07690 Major Facilitator Superfamily ID12_09670 PF03358 NADPH-dependent FMN reductase ID12_09680 PF00313 'Cold-shock' DNA-binding domain ID12_09685 PF00990 GGDEF domain ID12_09685 PF07694 5TMR of 5TMR-LYT ID12_09700 PF09580 ID12_09700 ID12_09710 PF07875 ID12_09710 ID12_09715 PF00512 His Kinase A (phospho-acceptor) domain ID12_09715 PF01339 CheB methylesterase ID12_09715 PF01739 CheR methyltransferase, SAM binding domain ID12_09715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_09715 PF08448 PAS fold ID12_09715 PF13596 PAS domain ID12_09720 PF00149 Calcineurin-like phosphoesterase ID12_09720 PF00565 Staphylococcal nuclease homologue ID12_09720 PF02872 5'-nucleotidase, C-terminal domain ID12_09725 PF04203 Sortase family ID12_09730 PF00849 RNA pseudouridylate synthase ID12_09735 PF17326 ID12_09735 ID12_09745 PF13419 Haloacid dehalogenase-like hydrolase ID12_09750 PF00583 Acetyltransferase (GNAT) family ID12_09750 PF00795 Carbon-nitrogen hydrolase ID12_09760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_09765 PF03547 ID12_09765 ID12_09770 PF07905 ID12_09770 ID12_09770 PF13556 PucR C-terminal helix-turn-helix domain ID12_09775 PF00202 Aminotransferase class-III ID12_09780 PF04309 Glycerol-3-phosphate responsive antiterminator ID12_09785 PF00230 Major intrinsic protein ID12_09790 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ID12_09790 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ID12_09795 PF01266 FAD dependent oxidoreductase ID12_09795 PF16901 ID12_09795 ID12_09800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ID12_09800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ID12_09800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ID12_09800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ID12_09805 PF07730 Histidine kinase ID12_09805 PF13185 GAF domain ID12_09810 PF00072 Response regulator receiver domain ID12_09810 PF00196 Bacterial regulatory proteins, luxR family ID12_09815 PF14148 ID12_09815 ID12_09820 PF13028 Protein of unknown function (DUF3889) ID12_09825 PF00199 Catalase ID12_09825 PF06628 Catalase-related immune-responsive ID12_09830 PF02082 Transcriptional regulator ID12_09835 PF00042 Globin ID12_09835 PF00175 Oxidoreductase NAD-binding domain ID12_09835 PF00970 Oxidoreductase FAD-binding domain ID12_09840 PF04293 ID12_09840 ID12_09845 PF00245 Alkaline phosphatase ID12_09850 PF00877 NlpC/P60 family ID12_09850 PF01476 LysM domain ID12_09855 PF13520 Amino acid permease ID12_09860 PF17453 ID12_09860 ID12_09865 PF13791 ID12_09865 ID12_09865 PF13800 ID12_09865 ID12_09870 PF04542 Sigma-70 region 2 ID12_09870 PF08281 Sigma-70, region 4 ID12_09875 PF01553 Acyltransferase ID12_09880 PF00571 CBS domain ID12_09880 PF01595 ID12_09880 ID12_09880 PF03471 Transporter associated domain ID12_09890 PF00571 CBS domain ID12_09890 PF01595 ID12_09890 ID12_09890 PF03471 Transporter associated domain ID12_09900 PF02537 ID12_09900 ID12_09905 PF02537 ID12_09905 ID12_09910 PF03009 Glycerophosphoryl diester phosphodiesterase family ID12_09920 PF00924 Mechanosensitive ion channel ID12_09925 PF02146 Sir2 family ID12_09930 PF01522 Polysaccharide deacetylase ID12_09935 PF01063 Aminotransferase class IV ID12_09940 PF00582 Universal stress protein family ID12_09955 PF00005 ABC transporter ID12_09955 PF00664 ABC transporter transmembrane region ID12_09960 PF00005 ABC transporter ID12_09960 PF00664 ABC transporter transmembrane region ID12_09975 PF13460 NADH(P)-binding ID12_09985 PF00269 Small, acid-soluble spore proteins, alpha/beta type ID12_09990 PF00005 ABC transporter ID12_09990 PF08402 TOBE domain ID12_09995 PF13556 PucR C-terminal helix-turn-helix domain ID12_10000 PF17277 ID12_10000 ID12_10005 PF14398 ID12_10005 ID12_10015 PF04286 ID12_10015 ID12_10020 PF06133 Protein of unknown function (DUF964) ID12_10025 PF08282 haloacid dehalogenase-like hydrolase ID12_10030 PF04055 Radical SAM superfamily ID12_10035 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ID12_10040 PF00999 Sodium/hydrogen exchanger family ID12_10045 PF02080 TrkA-C domain ID12_10055 PF00378 Enoyl-CoA hydratase/isomerase family ID12_10060 PF14120 ID12_10060 ID12_10065 PF00149 Calcineurin-like phosphoesterase ID12_10070 PF13514 AAA domain ID12_10075 PF01966 HD domain ID12_10080 PF14147 ID12_10080 ID12_10085 PF13616 PPIC-type PPIASE domain ID12_10100 PF11667 ID12_10100 ID12_10105 PF08963 Protein of unknown function (DUF1878) ID12_10110 PF01047 MarR family ID12_10115 PF12732 ID12_10115 ID12_10125 PF17099 ID12_10125 ID12_10130 PF00266 Aminotransferase class-V ID12_10135 PF01230 HIT domain ID12_10145 PF00005 ABC transporter ID12_10150 PF05975 ID12_10150 ID12_10155 PF12787 ID12_10155 ID12_10160 PF01546 Peptidase family M20/M25/M40 ID12_10160 PF07687 Peptidase dimerisation domain ID12_10170 PF03992 Antibiotic biosynthesis monooxygenase ID12_10175 PF00905 Penicillin binding protein transpeptidase domain ID12_10175 PF00912 Transglycosylase ID12_10180 PF01208 Uroporphyrinogen decarboxylase (URO-D) ID12_10185 PF00762 Ferrochelatase ID12_10190 PF01593 Flavin containing amine oxidoreductase ID12_10195 PF00440 Bacterial regulatory proteins, tetR family ID12_10200 PF12698 ABC-2 family transporter protein ID12_10205 PF05343 M42 glutamyl aminopeptidase ID12_10210 PF00375 Sodium:dicarboxylate symporter family ID12_10220 PF12706 Beta-lactamase superfamily domain ID12_10225 PF03099 Biotin/lipoate A/B protein ligase family ID12_10225 PF10437 Bacterial lipoate protein ligase C-terminus ID12_10230 PF00501 AMP-binding enzyme ID12_10230 PF13193 AMP-binding enzyme C-terminal domain ID12_10240 PF01435 Peptidase family M48 ID12_10240 PF16491 ID12_10240 ID12_10245 PF00082 Subtilase family ID12_10245 PF05922 Peptidase inhibitor I9 ID12_10250 PF00300 Histidine phosphatase superfamily (branch 1) ID12_10255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_10255 PF11563 Protoglobin ID12_10260 PF00355 Rieske [2Fe-2S] domain ID12_10260 PF01266 FAD dependent oxidoreductase ID12_10265 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_10270 PF08858 IDEAL domain ID12_10275 PF06338 ID12_10275 ID12_10280 PF01168 Alanine racemase, N-terminal domain ID12_10280 PF14031 Putative serine dehydratase domain ID12_10290 PF00155 Aminotransferase class I and II ID12_10290 PF00392 Bacterial regulatory proteins, gntR family ID12_10295 PF07690 Major Facilitator Superfamily ID12_10300 PF01337 Barstar (barnase inhibitor) ID12_10305 PF01032 FecCD transport family ID12_10310 PF01032 FecCD transport family ID12_10315 PF00005 ABC transporter ID12_10320 PF01497 Periplasmic binding protein ID12_10325 PF03816 Cell envelope-related transcriptional attenuator domain ID12_10340 PF09335 ID12_10340 ID12_10345 PF00717 Peptidase S24-like ID12_10350 PF05145 ID12_10350 ID12_10355 PF03965 Penicillinase repressor ID12_10360 PF05569 BlaR1 peptidase M56 ID12_10365 PF07681 ID12_10365 ID12_10370 PF02915 Rubrerythrin ID12_10375 PF12705 PD-(D/E)XK nuclease superfamily ID12_10380 PF00580 UvrD/REP helicase N-terminal domain ID12_10380 PF12705 PD-(D/E)XK nuclease superfamily ID12_10380 PF13361 UvrD-like helicase C-terminal domain ID12_10385 PF00149 Calcineurin-like phosphoesterase ID12_10385 PF12320 Type 5 capsule protein repressor C-terminal domain ID12_10390 PF13555 P-loop containing region of AAA domain ID12_10390 PF13558 Putative exonuclease SbcCD, C subunit ID12_10400 PF10676 ID12_10400 ID12_10405 PF10970 ID12_10405 ID12_10415 PF10737 ID12_10415 ID12_10420 PF10803 ID12_10420 ID12_10425 PF10676 ID12_10425 ID12_10430 PF09388 Spo0E like sporulation regulatory protein ID12_10435 PF08757 ID12_10435 ID12_10450 PF01557 Fumarylacetoacetate (FAA) hydrolase family ID12_10455 PF07457 ID12_10455 ID12_10460 PF10949 ID12_10460 ID12_10465 PF00733 Asparagine synthase ID12_10465 PF13537 Glutamine amidotransferase domain ID12_10470 PF01593 Flavin containing amine oxidoreductase ID12_10475 PF01593 Flavin containing amine oxidoreductase ID12_10480 PF00494 Squalene/phytoene synthase ID12_10485 PF01554 MatE ID12_10490 PF02311 AraC-like ligand binding domain ID12_10490 PF12833 Helix-turn-helix domain ID12_10495 PF13302 Acetyltransferase (GNAT) domain ID12_10505 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_10510 PF00202 Aminotransferase class-III ID12_10515 PF00282 Pyridoxal-dependent decarboxylase conserved domain ID12_10520 PF04183 IucA / IucC family ID12_10520 PF06276 Ferric iron reductase FhuF-like transporter ID12_10525 PF13523 Acetyltransferase (GNAT) domain ID12_10530 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ID12_10535 PF04183 IucA / IucC family ID12_10535 PF06276 Ferric iron reductase FhuF-like transporter ID12_10540 PF13673 Acetyltransferase (GNAT) domain ID12_10550 PF00809 Pterin binding enzyme ID12_10550 PF02310 B12 binding domain ID12_10550 PF02574 Homocysteine S-methyltransferase ID12_10550 PF02607 B12 binding domain ID12_10550 PF02965 Vitamin B12 dependent methionine synthase, activation domain ID12_10555 PF02219 Methylenetetrahydrofolate reductase ID12_10555 PF02574 Homocysteine S-methyltransferase ID12_10560 PF04461 Protein of unknown function (DUF520) ID12_10565 PF13509 S1 domain ID12_10570 PF02608 Basic membrane protein ID12_10575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_10575 PF00672 HAMP domain ID12_10580 PF02645 Uncharacterised protein, DegV family COG1307 ID12_10585 PF02588 ID12_10585 ID12_10585 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ID12_10590 PF12690 Intracellular proteinase inhibitor ID12_10595 PF12758 ID12_10595 ID12_10605 PF08282 haloacid dehalogenase-like hydrolase ID12_10610 PF00326 Prolyl oligopeptidase family ID12_10615 PF01883 Domain of unknown function DUF59 ID12_10620 PF01565 FAD binding domain ID12_10620 PF04030 D-arabinono-1,4-lactone oxidase ID12_10625 PF07690 Major Facilitator Superfamily ID12_10630 PF01118 Semialdehyde dehydrogenase, NAD binding domain ID12_10630 PF02774 Semialdehyde dehydrogenase, dimerisation domain ID12_10635 PF01960 ArgJ family ID12_10640 PF00696 Amino acid kinase family ID12_10645 PF00202 Aminotransferase class-III ID12_10650 PF00117 Glutamine amidotransferase class-I ID12_10650 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ID12_10655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ID12_10655 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ID12_10660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ID12_10660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ID12_10665 PF14168 ID12_10665 ID12_10670 PF07690 Major Facilitator Superfamily ID12_10680 PF11151 ID12_10680 ID12_10695 PF02608 Basic membrane protein ID12_10700 PF10815 ID12_10700 ID12_10710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ID12_10710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ID12_10715 PF00109 Beta-ketoacyl synthase, N-terminal domain ID12_10715 PF02801 Beta-ketoacyl synthase, C-terminal domain ID12_10720 PF10026 ID12_10720 ID12_10725 PF00005 ABC transporter ID12_10725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_10730 PF00005 ABC transporter ID12_10730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_10735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ID12_10740 PF00528 Binding-protein-dependent transport system inner membrane component ID12_10745 PF00528 Binding-protein-dependent transport system inner membrane component ID12_10745 PF12911 ID12_10745 ID12_10755 PF03781 Sulfatase-modifying factor enzyme 1 ID12_10760 PF00925 GTP cyclohydrolase II ID12_10765 PF00400 WD domain, G-beta repeat ID12_10775 PF07690 Major Facilitator Superfamily ID12_10785 PF12227 ID12_10785 ID12_10790 PF00579 tRNA synthetases class I (W and Y) ID12_10795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ID12_10800 PF00528 Binding-protein-dependent transport system inner membrane component ID12_10805 PF00528 Binding-protein-dependent transport system inner membrane component ID12_10805 PF12911 ID12_10805 ID12_10810 PF00005 ABC transporter ID12_10810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_10815 PF00005 ABC transporter ID12_10815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_10825 PF13508 Acetyltransferase (GNAT) domain ID12_10830 PF03960 ArsC family ID12_10835 PF03741 ID12_10835 ID12_10840 PF05389 Negative regulator of genetic competence (MecA) ID12_10845 PF13091 PLD-like domain ID12_10845 PF13396 ID12_10845 ID12_10850 PF06054 ID12_10850 ID12_10855 PF01432 Peptidase family M3 ID12_10855 PF08439 Oligopeptidase F ID12_10865 PF13743 Thioredoxin ID12_10870 PF01152 Bacterial-like globin ID12_10875 PF01464 Transglycosylase SLT domain ID12_10880 PF01928 CYTH domain ID12_10890 PF04607 Region found in RelA / SpoT proteins ID12_10895 PF01513 ATP-NAD kinase ID12_10900 PF00849 RNA pseudouridylate synthase ID12_10905 PF00149 Calcineurin-like phosphoesterase ID12_10910 PF00999 Sodium/hydrogen exchanger family ID12_10910 PF02080 TrkA-C domain ID12_10910 PF02254 TrkA-N domain ID12_10915 PF03070 TENA/THI-4/PQQC family ID12_10920 PF02581 Thiamine monophosphate synthase/TENI ID12_10925 PF01266 FAD dependent oxidoreductase ID12_10930 PF02597 ThiS family ID12_10935 PF05690 Thiazole biosynthesis protein ThiG ID12_10940 PF00899 ThiF family ID12_10945 PF08543 Phosphomethylpyrimidine kinase ID12_10950 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_10955 PF14153 ID12_10955 ID12_10960 PF10612 ID12_10960 ID12_10965 PF10612 ID12_10965 ID12_10970 PF07552 ID12_10970 ID12_10980 PF07552 ID12_10980 ID12_10985 PF07098 ID12_10985 ID12_11000 PF09680 ID12_11000 ID12_11005 PF14069 ID12_11005 ID12_11010 PF00580 UvrD/REP helicase N-terminal domain ID12_11010 PF13361 UvrD-like helicase C-terminal domain ID12_11020 PF13673 Acetyltransferase (GNAT) domain ID12_11025 PF13563 2'-5' RNA ligase superfamily ID12_11030 PF00756 Putative esterase ID12_11035 PF01053 Cys/Met metabolism PLP-dependent enzyme ID12_11040 PF01053 Cys/Met metabolism PLP-dependent enzyme ID12_11050 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ID12_11055 PF01047 MarR family ID12_11065 PF00669 Bacterial flagellin N-terminal helical region ID12_11065 PF00700 Bacterial flagellin C-terminal helical region ID12_11070 PF05598 ID12_11070 ID12_11070 PF13751 ID12_11070 ID12_11080 PF00302 Chloramphenicol acetyltransferase ID12_11085 PF00440 Bacterial regulatory proteins, tetR family ID12_11090 PF00106 short chain dehydrogenase ID12_11095 PF14568 SMI1-KNR4 cell-wall ID12_11100 PF10852 ID12_11100 ID12_11105 PF01636 Phosphotransferase enzyme family ID12_11110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_11110 PF03466 LysR substrate binding domain ID12_11115 PF01177 Asp/Glu/Hydantoin racemase ID12_11120 PF12867 DinB superfamily ID12_11125 PF13302 Acetyltransferase (GNAT) domain ID12_11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_11130 PF03466 LysR substrate binding domain ID12_11135 PF07690 Major Facilitator Superfamily ID12_11140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ID12_11140 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_11145 PF00440 Bacterial regulatory proteins, tetR family ID12_11150 PF13673 Acetyltransferase (GNAT) domain ID12_11160 PF00842 Alanine racemase, C-terminal domain ID12_11160 PF01168 Alanine racemase, N-terminal domain ID12_11165 PF00107 Zinc-binding dehydrogenase ID12_11165 PF08240 Alcohol dehydrogenase GroES-like domain ID12_11170 PF00440 Bacterial regulatory proteins, tetR family ID12_11170 PF14278 ID12_11170 ID12_11175 PF01344 Kelch motif ID12_11180 PF00669 Bacterial flagellin N-terminal helical region ID12_11180 PF00700 Bacterial flagellin C-terminal helical region ID12_11185 PF00669 Bacterial flagellin N-terminal helical region ID12_11185 PF00700 Bacterial flagellin C-terminal helical region ID12_11190 PF01494 FAD binding domain ID12_11195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_11205 PF17428 ID12_11205 ID12_11210 PF05908 Protein of unknown function (DUF867) ID12_11215 PF06114 Domain of unknown function (DUF955) ID12_11225 PF01471 Putative peptidoglycan binding domain ID12_11225 PF01476 LysM domain ID12_11225 PF01510 N-acetylmuramoyl-L-alanine amidase ID12_11235 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system ID12_11240 PF14171 Toxin SpoIISA, type II toxin-antitoxin system ID12_11245 PF01384 ID12_11245 ID12_11250 PF01865 Protein of unknown function DUF47 ID12_11255 PF04266 ASCH domain ID12_11260 PF01019 Gamma-glutamyltranspeptidase ID12_11265 PF13531 Bacterial extracellular solute-binding protein ID12_11270 PF00528 Binding-protein-dependent transport system inner membrane component ID12_11275 PF00528 Binding-protein-dependent transport system inner membrane component ID12_11285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_11290 PF03611 ID12_11290 ID12_11295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_11305 PF00107 Zinc-binding dehydrogenase ID12_11305 PF08240 Alcohol dehydrogenase GroES-like domain ID12_11310 PF00676 Dehydrogenase E1 component ID12_11315 PF02779 Transketolase, pyrimidine binding domain ID12_11315 PF02780 Transketolase, C-terminal domain ID12_11320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ID12_11320 PF00364 Biotin-requiring enzyme ID12_11320 PF02817 e3 binding domain ID12_11325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ID12_11325 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_11330 PF00106 short chain dehydrogenase ID12_11335 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_11340 PF04198 Putative sugar-binding domain ID12_11350 PF13520 Amino acid permease ID12_11355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_11360 PF13180 PDZ domain ID12_11360 PF13365 Trypsin-like peptidase domain ID12_11365 PF03807 NADP oxidoreductase coenzyme F420-dependent ID12_11365 PF14748 Pyrroline-5-carboxylate reductase dimerisation ID12_11370 PF04951 D-aminopeptidase ID12_11375 PF00528 Binding-protein-dependent transport system inner membrane component ID12_11380 PF00528 Binding-protein-dependent transport system inner membrane component ID12_11380 PF12911 ID12_11380 ID12_11385 PF00005 ABC transporter ID12_11385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_11390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ID12_11400 PF02016 LD-carboxypeptidase ID12_11405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ID12_11405 PF13378 Enolase C-terminal domain-like ID12_11410 PF00877 NlpC/P60 family ID12_11415 PF00005 ABC transporter ID12_11415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ID12_11420 PF02274 Amidinotransferase ID12_11425 PF03061 Thioesterase superfamily ID12_11430 PF03551 Transcriptional regulator PadR-like family ID12_11440 PF06695 ID12_11440 ID12_11445 PF13302 Acetyltransferase (GNAT) domain ID12_11450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ID12_11450 PF02805 Metal binding domain of Ada ID12_11450 PF12833 Helix-turn-helix domain ID12_11455 PF00893 Small Multidrug Resistance protein ID12_11460 PF00893 Small Multidrug Resistance protein ID12_11470 PF00551 Formyl transferase ID12_11470 PF01842 ACT domain ID12_11475 PF00696 Amino acid kinase family ID12_11475 PF01472 PUA domain ID12_11480 PF00171 Aldehyde dehydrogenase family ID12_11485 PF13424 Tetratricopeptide repeat ID12_11495 PF02566 OsmC-like protein ID12_11500 PF01047 MarR family ID12_11505 PF02566 OsmC-like protein ID12_11510 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ID12_11515 PF01717 Cobalamin-independent synthase, Catalytic domain ID12_11515 PF08267 Cobalamin-independent synthase, N-terminal domain ID12_11520 PF00082 Subtilase family ID12_11530 PF01381 Helix-turn-helix ID12_11535 PF00072 Response regulator receiver domain ID12_11535 PF00486 Transcriptional regulatory protein, C terminal ID12_11540 PF00512 His Kinase A (phospho-acceptor) domain ID12_11540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_11545 PF03413 Peptidase propeptide and YPEB domain ID12_11550 PF03413 Peptidase propeptide and YPEB domain ID12_11570 PF00571 CBS domain ID12_11570 PF01769 Divalent cation transporter ID12_11570 PF03448 MgtE intracellular N domain ID12_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_11580 PF03466 LysR substrate binding domain ID12_11585 PF07883 Cupin domain ID12_11590 PF13411 MerR HTH family regulatory protein ID12_11605 PF01047 MarR family ID12_11610 PF00563 EAL domain ID12_11610 PF00990 GGDEF domain ID12_11610 PF03707 ID12_11610 ID12_11615 PF09335 ID12_11615 ID12_11620 PF03741 ID12_11620 ID12_11625 PF04542 Sigma-70 region 2 ID12_11630 PF12791 ID12_11630 ID12_11635 PF00269 Small, acid-soluble spore proteins, alpha/beta type ID12_11640 PF08876 ID12_11640 ID12_11645 PF01435 Peptidase family M48 ID12_11650 PF02386 Cation transport protein ID12_11655 PF04239 Protein of unknown function (DUF421) ID12_11670 PF01757 ID12_11670 ID12_11675 PF00512 His Kinase A (phospho-acceptor) domain ID12_11675 PF00989 PAS fold ID12_11675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_11675 PF13188 PAS domain ID12_11675 PF13426 PAS domain ID12_11680 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ID12_11680 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ID12_11690 PF01008 Initiation factor 2 subunit family ID12_11695 PF01636 Phosphotransferase enzyme family ID12_11700 PF00155 Aminotransferase class I and II ID12_11705 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ID12_11705 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ID12_11710 PF12710 haloacid dehalogenase-like hydrolase ID12_11715 PF00596 Class II Aldolase and Adducin N-terminal domain ID12_11720 PF03079 ARD/ARD' family ID12_11725 PF09388 Spo0E like sporulation regulatory protein ID12_11730 PF00512 His Kinase A (phospho-acceptor) domain ID12_11730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_11730 PF02743 Cache domain ID12_11735 PF01047 MarR family ID12_11740 PF00691 OmpA family ID12_11740 PF13677 ID12_11740 ID12_11745 PF01618 ID12_11745 ID12_11755 PF00004 ATPase family associated with various cellular activities (AAA) ID12_11755 PF02151 UvrB/uvrC motif ID12_11755 PF07724 AAA domain (Cdc48 subfamily) ID12_11755 PF10431 C-terminal, D2-small domain, of ClpB protein ID12_11770 PF06508 Queuosine biosynthesis protein QueC ID12_11775 PF01242 6-pyruvoyl tetrahydropterin synthase ID12_11780 PF04055 Radical SAM superfamily ID12_11780 PF13394 4Fe-4S single cluster domain ID12_11785 PF14489 QueF-like protein ID12_11795 PF00583 Acetyltransferase (GNAT) family ID12_11800 PF09953 ID12_11800 ID12_11810 PF07486 Cell Wall Hydrolase ID12_11815 PF01943 ID12_11815 ID12_11820 PF00578 AhpC/TSA family ID12_11825 PF00122 E1-E2 ATPase ID12_11825 PF00702 haloacid dehalogenase-like hydrolase ID12_11830 PF00557 Metallopeptidase family M24 ID12_11830 PF01321 Creatinase/Prolidase N-terminal domain ID12_11840 PF00356 Bacterial regulatory proteins, lacI family ID12_11840 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ID12_11845 PF00874 PRD domain ID12_11845 PF03123 CAT RNA binding domain ID12_11850 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ID12_11850 PF00367 phosphotransferase system, EIIB ID12_11850 PF02378 Phosphotransferase system, EIIC ID12_11855 PF00381 PTS HPr component phosphorylation site ID12_11860 PF00391 PEP-utilising enzyme, mobile domain ID12_11860 PF02896 PEP-utilising enzyme, TIM barrel domain ID12_11860 PF05524 PEP-utilising enzyme, N-terminal ID12_11865 PF11132 ID12_11865 ID12_11875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_11875 PF00672 HAMP domain ID12_11875 PF02743 Cache domain ID12_11880 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_11885 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ID12_11885 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ID12_11890 PF00188 Cysteine-rich secretory protein family ID12_11895 PF00905 Penicillin binding protein transpeptidase domain ID12_11895 PF03717 Penicillin-binding Protein dimerisation domain ID12_11900 PF00512 His Kinase A (phospho-acceptor) domain ID12_11900 PF00989 PAS fold ID12_11900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_11900 PF13426 PAS domain ID12_11905 PF00155 Aminotransferase class I and II ID12_11910 PF01545 Cation efflux family ID12_11910 PF16916 ID12_11910 ID12_11920 PF06271 ID12_11920 ID12_11925 PF11700 ID12_11925 ID12_11930 PF00072 Response regulator receiver domain ID12_11930 PF01584 CheW-like domain ID12_11935 PF14177 ID12_11935 ID12_11955 PF07690 Major Facilitator Superfamily ID12_11960 PF01476 LysM domain ID12_11960 PF03734 L,D-transpeptidase catalytic domain ID12_11965 PF00149 Calcineurin-like phosphoesterase ID12_11965 PF10518 TAT (twin-arginine translocation) pathway signal sequence ID12_11970 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_11975 PF00563 EAL domain ID12_11975 PF10388 EAL-domain associated signalling protein domain ID12_11980 PF05067 Manganese containing catalase ID12_11985 PF08796 Protein of unknown function (DUF1797) ID12_11990 PF04308 ID12_11990 ID12_11995 PF14156 Antirepressor AbbA ID12_12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_12005 PF03466 LysR substrate binding domain ID12_12010 PF14101 ID12_12010 ID12_12015 PF00258 Flavodoxin ID12_12025 PF00258 Flavodoxin ID12_12030 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_12030 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal ID12_12030 PF14602 Hexapeptide repeat of succinyl-transferase ID12_12035 PF01546 Peptidase family M20/M25/M40 ID12_12035 PF07687 Peptidase dimerisation domain ID12_12040 PF03698 ID12_12040 ID12_12045 PF00924 Mechanosensitive ion channel ID12_12050 PF00578 AhpC/TSA family ID12_12050 PF10417 C-terminal domain of 1-Cys peroxiredoxin ID12_12055 PF00578 AhpC/TSA family ID12_12070 PF12804 MobA-like NTP transferase domain ID12_12075 PF00899 ThiF family ID12_12080 PF00994 Probable molybdopterin binding domain ID12_12080 PF03453 MoeA N-terminal region (domain I and II) ID12_12080 PF03454 MoeA C-terminal region (domain IV) ID12_12085 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ID12_12090 PF02391 MoaE protein ID12_12095 PF02597 ThiS family ID12_12105 PF04893 ID12_12105 ID12_12110 PF16576 ID12_12110 ID12_12115 PF00005 ABC transporter ID12_12120 PF02687 ID12_12120 ID12_12120 PF12704 MacB-like periplasmic core domain ID12_12125 PF00455 ID12_12125 ID12_12125 PF08220 DeoR-like helix-turn-helix domain ID12_12130 PF00294 pfkB family carbohydrate kinase ID12_12135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_12135 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_12135 PF02378 Phosphotransferase system, EIIC ID12_12140 PF00717 Peptidase S24-like ID12_12150 PF00005 ABC transporter ID12_12150 PF12848 ABC transporter ID12_12160 PF08808 ID12_12160 ID12_12165 PF02073 Thermophilic metalloprotease (M29) ID12_12175 PF06723 MreB/Mbl protein ID12_12180 PF04014 Antidote-toxin recognition MazE ID12_12185 PF00512 His Kinase A (phospho-acceptor) domain ID12_12185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_12185 PF13426 PAS domain ID12_12190 PF06094 AIG2-like family ID12_12190 PF13772 AIG2-like family ID12_12195 PF02080 TrkA-C domain ID12_12195 PF02254 TrkA-N domain ID12_12200 PF01979 Amidohydrolase family ID12_12200 PF13382 Adenine deaminase C-terminal domain ID12_12205 PF00753 Metallo-beta-lactamase superfamily ID12_12205 PF07521 RNA-metabolising metallo-beta-lactamase ID12_12210 PF07288 Protein of unknown function (DUF1447) ID12_12215 PF08282 haloacid dehalogenase-like hydrolase ID12_12220 PF01327 Polypeptide deformylase ID12_12225 PF09680 ID12_12225 ID12_12230 PF10368 Putative cell-wall binding lipoprotein ID12_12235 PF00676 Dehydrogenase E1 component ID12_12240 PF02779 Transketolase, pyrimidine binding domain ID12_12240 PF02780 Transketolase, C-terminal domain ID12_12245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ID12_12245 PF00364 Biotin-requiring enzyme ID12_12245 PF02817 e3 binding domain ID12_12250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ID12_12250 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_12265 PF01276 Orn/Lys/Arg decarboxylase, major domain ID12_12265 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ID12_12270 PF05256 Uncharacterised protein family (UPF0223) ID12_12275 PF06335 Protein of unknown function (DUF1054) ID12_12285 PF00459 Inositol monophosphatase family ID12_12300 PF04542 Sigma-70 region 2 ID12_12300 PF08281 Sigma-70, region 4 ID12_12305 PF13490 Putative zinc-finger ID12_12315 PF17259 ID12_12315 ID12_12320 PF00009 Elongation factor Tu GTP binding domain ID12_12320 PF00679 Elongation factor G C-terminus ID12_12320 PF03144 Elongation factor Tu domain 2 ID12_12320 PF14492 Elongation Factor G, domain II ID12_12325 PF14036 ID12_12325 ID12_12330 PF09963 ID12_12330 ID12_12335 PF09580 ID12_12335 ID12_12340 PF02562 PhoH-like protein ID12_12340 PF13638 PIN domain ID12_12350 PF04960 Glutaminase ID12_12355 PF07408 Protein of unknown function (DUF1507) ID12_12360 PF01098 ID12_12360 ID12_12365 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ID12_12365 PF00364 Biotin-requiring enzyme ID12_12365 PF00682 HMGL-like ID12_12365 PF02436 Conserved carboxylase domain ID12_12365 PF02785 Biotin carboxylase C-terminal domain ID12_12365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ID12_12370 PF00875 DNA photolyase ID12_12370 PF03441 FAD binding domain of DNA photolyase ID12_12375 PF02628 ID12_12375 ID12_12380 PF01040 UbiA prenyltransferase family ID12_12385 PF00034 Cytochrome c ID12_12385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ID12_12385 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ID12_12390 PF00115 Cytochrome C and Quinol oxidase polypeptide I ID12_12395 PF00510 Cytochrome c oxidase subunit III ID12_12400 PF03626 ID12_12400 ID12_12405 PF09678 ID12_12405 ID12_12410 PF08868 YugN-like family ID12_12415 PF00571 CBS domain ID12_12420 PF00188 Cysteine-rich secretory protein family ID12_12420 PF14504 CAP-associated N-terminal ID12_12425 PF14071 ID12_12425 ID12_12430 PF14003 ID12_12430 ID12_12440 PF06133 Protein of unknown function (DUF964) ID12_12445 PF09902 ID12_12445 ID12_12450 PF03602 Conserved hypothetical protein 95 ID12_12455 PF01467 Cytidylyltransferase ID12_12460 PF07670 Nucleoside recognition ID12_12465 PF01734 Patatin-like phospholipase ID12_12470 PF05362 Lon protease (S16) C-terminal proteolytic domain ID12_12470 PF13180 PDZ domain ID12_12475 PF05636 HIGH Nucleotidyl Transferase ID12_12480 PF02620 ID12_12480 ID12_12485 PF01783 Ribosomal L32p protein family ID12_12490 PF13921 Myb-like DNA-binding domain ID12_12495 PF13508 Acetyltransferase (GNAT) domain ID12_12500 PF02558 Ketopantoate reductase PanE/ApbA ID12_12500 PF08546 Ketopantoate reductase PanE/ApbA C terminal ID12_12505 PF10079 ID12_12505 ID12_12510 PF02381 MraZ protein ID12_12515 PF01795 MraW methylase family ID12_12525 PF00905 Penicillin binding protein transpeptidase domain ID12_12525 PF03717 Penicillin-binding Protein dimerisation domain ID12_12525 PF03793 PASTA domain ID12_12530 PF00905 Penicillin binding protein transpeptidase domain ID12_12530 PF03717 Penicillin-binding Protein dimerisation domain ID12_12530 PF03793 PASTA domain ID12_12535 PF01225 Mur ligase family, catalytic domain ID12_12535 PF02875 Mur ligase family, glutamate ligase domain ID12_12535 PF08245 Mur ligase middle domain ID12_12545 PF00953 Glycosyl transferase family 4 ID12_12545 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ID12_12550 PF02875 Mur ligase family, glutamate ligase domain ID12_12550 PF08245 Mur ligase middle domain ID12_12555 PF01098 ID12_12555 ID12_12560 PF03033 Glycosyltransferase family 28 N-terminal domain ID12_12560 PF04101 Glycosyltransferase family 28 C-terminal domain ID12_12565 PF01565 FAD binding domain ID12_12565 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ID12_12570 PF03799 Cell division protein FtsQ ID12_12570 PF08478 POTRA domain, FtsQ-type ID12_12575 PF05949 Bacterial protein of unknown function (DUF881) ID12_12580 PF05949 Bacterial protein of unknown function (DUF881) ID12_12585 PF06947 ID12_12585 ID12_12590 PF02491 SHS2 domain inserted in FTSA ID12_12590 PF14450 Cell division protein FtsA ID12_12595 PF00091 Tubulin/FtsZ family, GTPase domain ID12_12595 PF12327 FtsZ family, C-terminal domain ID12_12600 PF00082 Subtilase family ID12_12600 PF05547 ID12_12600 ID12_12600 PF05922 Peptidase inhibitor I9 ID12_12600 PF13620 Carboxypeptidase regulatory-like domain ID12_12610 PF03419 ID12_12610 ID12_12615 PF04542 Sigma-70 region 2 ID12_12615 PF04545 Sigma-70, region 4 ID12_12620 PF04539 Sigma-70 region 3 ID12_12620 PF04542 Sigma-70 region 2 ID12_12620 PF04545 Sigma-70, region 4 ID12_12625 PF04198 Putative sugar-binding domain ID12_12625 PF13384 Homeodomain-like domain ID12_12630 PF01113 Dihydrodipicolinate reductase, N-terminus ID12_12630 PF08666 SAF domain ID12_12635 PF06923 ID12_12635 ID12_12640 PF03608 ID12_12640 ID12_12645 PF03612 ID12_12645 ID12_12645 PF07663 ID12_12645 ID12_12650 PF03829 PTS system glucitol/sorbitol-specific IIA component ID12_12655 PF00005 ABC transporter ID12_12660 PF05239 PRC-barrel domain ID12_12665 PF02578 Multi-copper polyphenol oxidoreductase laccase ID12_12670 PF01168 Alanine racemase, N-terminal domain ID12_12675 PF04472 Protein of unknown function (DUF552) ID12_12680 PF02325 ID12_12680 ID12_12685 PF01479 S4 domain ID12_12690 PF05103 DivIVA protein ID12_12695 PF00133 tRNA synthetases class I (I, L, M and V) ID12_12695 PF08264 Anticodon-binding domain of tRNA ID12_12705 PF01252 ID12_12705 ID12_12710 PF00849 RNA pseudouridylate synthase ID12_12710 PF01479 S4 domain ID12_12715 PF00156 Phosphoribosyl transferase domain ID12_12720 PF00860 Permease family ID12_12725 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ID12_12725 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ID12_12730 PF01979 Amidohydrolase family ID12_12735 PF00117 Glutamine amidotransferase class-I ID12_12735 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ID12_12740 PF02142 MGS-like domain ID12_12740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ID12_12740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ID12_12745 PF00175 Oxidoreductase NAD-binding domain ID12_12745 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ID12_12750 PF01180 Dihydroorotate dehydrogenase ID12_12755 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ID12_12760 PF00156 Phosphoribosyl transferase domain ID12_12770 PF01507 Phosphoadenosine phosphosulfate reductase family ID12_12775 PF01384 ID12_12775 ID12_12780 PF01747 ATP-sulfurylase ID12_12780 PF14306 PUA-like domain ID12_12785 PF01583 Adenylylsulphate kinase ID12_12790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ID12_12795 PF01903 CbiX ID12_12800 PF13241 Putative NAD(P)-binding ID12_12805 PF05670 ID12_12805 ID12_12805 PF05833 Fibronectin-binding protein A N-terminus (FbpA) ID12_12810 PF00122 E1-E2 ATPase ID12_12810 PF00689 Cation transporting ATPase, C-terminus ID12_12810 PF00690 Cation transporter/ATPase, N-terminus ID12_12810 PF00702 haloacid dehalogenase-like hydrolase ID12_12815 PF03755 ID12_12815 ID12_12815 PF08340 ID12_12815 ID12_12820 PF04025 ID12_12820 ID12_12825 PF00625 Guanylate kinase ID12_12830 PF01192 RNA polymerase Rpb6 ID12_12835 PF02441 Flavoprotein ID12_12835 PF04127 DNA / pantothenate metabolism flavoprotein ID12_12840 PF00271 Helicase conserved C-terminal domain ID12_12840 PF04851 Type III restriction enzyme, res subunit ID12_12845 PF01327 Polypeptide deformylase ID12_12850 PF00551 Formyl transferase ID12_12850 PF02911 Formyl transferase, C-terminal domain ID12_12855 PF01029 NusB family ID12_12855 PF01189 NOL1/NOP2/sun family ID12_12860 PF04055 Radical SAM superfamily ID12_12860 PF13394 4Fe-4S single cluster domain ID12_12865 PF13672 Protein phosphatase 2C ID12_12870 PF00069 Protein kinase domain ID12_12870 PF03793 PASTA domain ID12_12875 PF03193 Protein of unknown function, DUF258 ID12_12875 PF16745 ID12_12875 ID12_12880 PF00834 Ribulose-phosphate 3 epimerase family ID12_12885 PF04263 Thiamin pyrophosphokinase, catalytic domain ID12_12885 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain ID12_12895 PF00830 Ribosomal L28 family ID12_12900 PF03780 ID12_12900 ID12_12905 PF02734 DAK2 domain ID12_12905 PF13684 Dihydroxyacetone kinase family ID12_12910 PF01842 ACT domain ID12_12910 PF03315 Serine dehydratase beta chain ID12_12915 PF03313 ID12_12915 ID12_12920 PF00270 DEAD/DEAH box helicase ID12_12920 PF00271 Helicase conserved C-terminal domain ID12_12920 PF17191 ID12_12920 ID12_12930 PF02504 Fatty acid synthesis protein ID12_12935 PF00698 Acyl transferase domain ID12_12940 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_12945 PF00550 Phosphopantetheine attachment site ID12_12950 PF00035 Double-stranded RNA binding motif ID12_12950 PF14622 Ribonuclease-III-like ID12_12955 PF02463 RecF/RecN/SMC N terminal domain ID12_12955 PF06470 SMC proteins Flexible Hinge Domain ID12_12960 PF00448 SRP54-type protein, GTPase domain ID12_12960 PF02881 SRP54-type protein, helical bundle domain ID12_12965 PF04297 Putative helix-turn-helix protein, YlxM / p13 like ID12_12970 PF00448 SRP54-type protein, GTPase domain ID12_12970 PF02881 SRP54-type protein, helical bundle domain ID12_12970 PF02978 Signal peptide binding domain ID12_12975 PF00886 Ribosomal protein S16 ID12_12980 PF13083 KH domain ID12_12985 PF11068 YlqD protein ID12_12990 PF01782 RimM N-terminal domain ID12_12990 PF05239 PRC-barrel domain ID12_12995 PF01746 tRNA (Guanine-1)-methyltransferase ID12_13000 PF01245 Ribosomal protein L19 ID12_13005 PF01926 50S ribosome-binding GTPase ID12_13010 PF01351 Ribonuclease HII ID12_13020 PF01312 FlhB HrpN YscU SpaS Family ID12_13025 PF00549 CoA-ligase ID12_13025 PF08442 ATP-grasp domain ID12_13030 PF00549 CoA-ligase ID12_13030 PF02629 CoA binding domain ID12_13035 PF02481 DNA recombination-mediator protein A ID12_13040 PF01131 DNA topoisomerase ID12_13040 PF01396 ID12_13040 ID12_13040 PF01751 Toprim domain ID12_13045 PF01134 Glucose inhibited division protein A ID12_13050 PF00589 Phage integrase family ID12_13050 PF02899 Phage integrase, N-terminal SAM-like domain ID12_13055 PF00227 Proteasome subunit ID12_13060 PF00004 ATPase family associated with various cellular activities (AAA) ID12_13060 PF07724 AAA domain (Cdc48 subfamily) ID12_13060 PF10431 C-terminal, D2-small domain, of ClpB protein ID12_13065 PF06018 CodY GAF-like domain ID12_13065 PF08222 CodY helix-turn-helix domain ID12_13070 PF00460 Flagella basal body rod protein ID12_13075 PF00460 Flagella basal body rod protein ID12_13075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ID12_13080 PF02049 ID12_13080 ID12_13085 PF01514 Secretory protein of YscJ/FliF family ID12_13085 PF08345 ID12_13085 ID12_13090 PF01706 FliG C-terminal domain ID12_13090 PF14841 FliG middle domain ID12_13090 PF14842 FliG N-terminal domain ID12_13095 PF02108 ID12_13095 ID12_13100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ID12_13100 PF02874 ATP synthase alpha/beta family, beta-barrel domain ID12_13105 PF02050 Flagellar FliJ protein ID12_13110 PF03448 MgtE intracellular N domain ID12_13115 PF02120 Flagellar hook-length control protein FliK ID12_13120 PF03963 ID12_13120 ID12_13125 PF00460 Flagella basal body rod protein ID12_13125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ID12_13130 PF06289 ID12_13130 ID12_13135 PF03748 ID12_13135 ID12_13140 PF01052 Surface presentation of antigens (SPOA) ID12_13140 PF02154 Flagellar motor switch protein FliM ID12_13145 PF01052 Surface presentation of antigens (SPOA) ID12_13145 PF04509 CheC-like family ID12_13150 PF00072 Response regulator receiver domain ID12_13155 PF04347 ID12_13155 ID12_13160 PF00813 ID12_13160 ID12_13165 PF01313 ID12_13165 ID12_13170 PF01311 ID12_13170 ID12_13175 PF01312 FlhB HrpN YscU SpaS Family ID12_13180 PF00771 FHIPEP family ID12_13185 PF00448 SRP54-type protein, GTPase domain ID12_13190 PF10609 ParA/MinD ATPase like ID12_13195 PF00072 Response regulator receiver domain ID12_13195 PF01339 CheB methylesterase ID12_13200 PF01584 CheW-like domain ID12_13200 PF01627 Hpt domain ID12_13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_13200 PF02895 Signal transducing histidine kinase, homodimeric domain ID12_13200 PF07194 P2 response regulator binding domain ID12_13205 PF01584 CheW-like domain ID12_13210 PF04509 CheC-like family ID12_13215 PF03975 CheD chemotactic sensory transduction ID12_13220 PF04539 Sigma-70 region 3 ID12_13220 PF04542 Sigma-70 region 2 ID12_13220 PF04545 Sigma-70, region 4 ID12_13230 PF00318 Ribosomal protein S2 ID12_13235 PF00889 Elongation factor TS ID12_13240 PF00696 Amino acid kinase family ID12_13245 PF01765 Ribosome recycling factor ID12_13250 PF01255 Putative undecaprenyl diphosphate synthase ID12_13255 PF01148 Cytidylyltransferase family ID12_13260 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ID12_13260 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal ID12_13260 PF13288 DXP reductoisomerase C-terminal domain ID12_13265 PF02163 Peptidase family M50 ID12_13265 PF13180 PDZ domain ID12_13270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ID12_13270 PF03129 Anticodon binding domain ID12_13270 PF04073 Aminoacyl-tRNA editing domain ID12_13275 PF00929 Exonuclease ID12_13275 PF02811 PHP domain ID12_13275 PF07733 Bacterial DNA polymerase III alpha subunit ID12_13275 PF11490 ID12_13275 ID12_13275 PF14480 ID12_13275 ID12_13275 PF14579 Helix-hairpin-helix motif ID12_13280 PF00759 Glycosyl hydrolase family 9 ID12_13280 PF00942 Cellulose binding domain ID12_13285 PF02011 Glycosyl hydrolase family 48 ID12_13290 PF00331 Glycosyl hydrolase family 10 ID12_13295 PF00150 Cellulase (glycosyl hydrolase family 5) ID12_13300 PF02576 Uncharacterised BCR, YhbC family COG0779 ID12_13300 PF17384 ID12_13300 ID12_13305 PF00575 S1 RNA binding domain ID12_13305 PF08529 NusA N-terminal domain ID12_13305 PF13184 NusA-like KH domain ID12_13310 PF04296 Protein of unknown function (DUF448) ID12_13315 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ID12_13320 PF00009 Elongation factor Tu GTP binding domain ID12_13320 PF04760 Translation initiation factor IF-2, N-terminal region ID12_13320 PF11987 Translation-initiation factor 2 ID12_13325 PF04456 Protein of unknown function (DUF503) ID12_13330 PF02033 Ribosome-binding factor A ID12_13335 PF01509 TruB family pseudouridylate synthase (N terminal domain) ID12_13335 PF16198 ID12_13335 ID12_13340 PF01687 Riboflavin kinase ID12_13340 PF06574 FAD synthetase ID12_13345 PF00312 Ribosomal protein S15 ID12_13350 PF00013 KH domain ID12_13350 PF00575 S1 RNA binding domain ID12_13350 PF01138 3' exoribonuclease family, domain 1 ID12_13350 PF03725 3' exoribonuclease family, domain 2 ID12_13350 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ID12_13355 PF01522 Polysaccharide deacetylase ID12_13360 PF00675 Insulinase (Peptidase family M16) ID12_13360 PF05193 Peptidase M16 inactive domain ID12_13365 PF01636 Phosphotransferase enzyme family ID12_13370 PF05239 PRC-barrel domain ID12_13375 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ID12_13375 PF16924 ID12_13375 ID12_13380 PF02441 Flavoprotein ID12_13385 PF01118 Semialdehyde dehydrogenase, NAD binding domain ID12_13385 PF02774 Semialdehyde dehydrogenase, dimerisation domain ID12_13390 PF00696 Amino acid kinase family ID12_13390 PF13840 ACT domain ID12_13395 PF00701 Dihydrodipicolinate synthetase family ID12_13400 PF00753 Metallo-beta-lactamase superfamily ID12_13400 PF07521 RNA-metabolising metallo-beta-lactamase ID12_13405 PF00574 Clp protease ID12_13410 PF14035 ID12_13410 ID12_13415 PF01580 FtsK/SpoIIIE family ID12_13415 PF09397 Ftsk gamma domain ID12_13420 PF00392 Bacterial regulatory proteins, gntR family ID12_13420 PF07702 UTRA domain ID12_13425 PF07690 Major Facilitator Superfamily ID12_13430 PF03176 MMPL family ID12_13435 PF05193 Peptidase M16 inactive domain ID12_13440 PF00675 Insulinase (Peptidase family M16) ID12_13440 PF05193 Peptidase M16 inactive domain ID12_13445 PF01047 MarR family ID12_13450 PF03176 MMPL family ID12_13455 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_13460 PF11588 Protein of unknown function (DUF3243) ID12_13465 PF11868 ID12_13465 ID12_13470 PF03348 ID12_13470 ID12_13470 PF13413 Helix-turn-helix domain ID12_13470 PF13464 ID12_13470 ID12_13475 PF01066 CDP-alcohol phosphatidyltransferase ID12_13480 PF00994 Probable molybdopterin binding domain ID12_13480 PF02464 Competence-damaged protein ID12_13485 PF00154 recA bacterial DNA recombination protein ID12_13490 PF00013 KH domain ID12_13490 PF01966 HD domain ID12_13490 PF12072 ID12_13490 ID12_13495 PF13277 YmdB-like protein ID12_13500 PF04232 Stage V sporulation protein S (SpoVS) ID12_13505 PF00873 AcrB/AcrD/AcrF family ID12_13510 PF00107 Zinc-binding dehydrogenase ID12_13510 PF08240 Alcohol dehydrogenase GroES-like domain ID12_13515 PF00155 Aminotransferase class I and II ID12_13520 PF12102 Domain of unknown function (DUF3578) ID12_13520 PF13020 ID12_13520 ID12_13525 PF00919 Uncharacterized protein family UPF0004 ID12_13525 PF01938 TRAM domain ID12_13525 PF04055 Radical SAM superfamily ID12_13530 PF06133 Protein of unknown function (DUF964) ID12_13535 PF10628 ID12_13535 ID12_13540 PF00488 MutS domain V ID12_13540 PF01624 MutS domain I ID12_13540 PF05188 MutS domain II ID12_13540 PF05190 MutS family domain IV ID12_13540 PF05192 MutS domain III ID12_13545 PF01119 DNA mismatch repair protein, C-terminal domain ID12_13545 PF08676 MutL C terminal dimerisation domain ID12_13545 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_13570 PF02559 CarD-like/TRCF domain ID12_13575 PF05908 Protein of unknown function (DUF867) ID12_13580 PF13374 Tetratricopeptide repeat ID12_13585 PF00082 Subtilase family ID12_13590 PF05908 Protein of unknown function (DUF867) ID12_13595 PF02566 OsmC-like protein ID12_13600 PF00893 Small Multidrug Resistance protein ID12_13605 PF00893 Small Multidrug Resistance protein ID12_13610 PF00440 Bacterial regulatory proteins, tetR family ID12_13620 PF12788 ID12_13620 ID12_13625 PF01715 IPP transferase ID12_13630 PF17209 ID12_13630 ID12_13635 PF14157 YmzC-like protein ID12_13645 PF07972 NrdI Flavodoxin like ID12_13650 PF00317 Ribonucleotide reductase, all-alpha domain ID12_13650 PF02867 Ribonucleotide reductase, barrel domain ID12_13650 PF08343 Ribonucleotide reductase N-terminal ID12_13655 PF00268 Ribonucleotide reductase, small chain ID12_13665 PF01520 N-acetylmuramoyl-L-alanine amidase ID12_13665 PF05036 Sporulation related domain ID12_13670 PF00004 ATPase family associated with various cellular activities (AAA) ID12_13680 PF01926 50S ribosome-binding GTPase ID12_13680 PF13167 ID12_13680 ID12_13680 PF16360 ID12_13680 ID12_13685 PF06838 Methionine gamma-lyase ID12_13690 PF13411 MerR HTH family regulatory protein ID12_13695 PF00120 Glutamine synthetase, catalytic domain ID12_13695 PF03951 Glutamine synthetase, beta-Grasp domain ID12_13710 PF13143 ID12_13710 ID12_13735 PF14568 SMI1-KNR4 cell-wall ID12_13765 PF00107 Zinc-binding dehydrogenase ID12_13765 PF08240 Alcohol dehydrogenase GroES-like domain ID12_13770 PF01047 MarR family ID12_13775 PF04740 ID12_13775 ID12_13775 PF13930 DNA/RNA non-specific endonuclease ID12_13780 PF04634 Protein of unknown function, DUF600 ID12_13785 PF01661 Macro domain ID12_13790 PF13302 Acetyltransferase (GNAT) domain ID12_13800 PF01569 PAP2 superfamily ID12_13805 PF08818 Domain of unknown function (DU1801) ID12_13810 PF10612 ID12_13810 ID12_13815 PF13157 ID12_13815 ID12_13820 PF01391 Collagen triple helix repeat (20 copies) ID12_13825 PF13424 Tetratricopeptide repeat ID12_13840 PF06912 ID12_13840 ID12_13845 PF01068 ATP dependent DNA ligase domain ID12_13850 PF02735 Ku70/Ku80 beta-barrel domain ID12_13855 PF09954 ID12_13855 ID12_13865 PF02082 Transcriptional regulator ID12_13870 PF13460 NADH(P)-binding ID12_13875 PF01435 Peptidase family M48 ID12_13880 PF02754 ID12_13880 ID12_13885 PF02589 Uncharacterised ACR, YkgG family COG1556 ID12_13885 PF11870 ID12_13885 ID12_13885 PF13183 4Fe-4S dicluster domain ID12_13890 PF02589 Uncharacterised ACR, YkgG family COG1556 ID12_13895 PF00892 EamA-like transporter family ID12_13905 PF00149 Calcineurin-like phosphoesterase ID12_13905 PF09511 RNA ligase ID12_13905 PF13671 AAA domain ID12_13910 PF04239 Protein of unknown function (DUF421) ID12_13915 PF00440 Bacterial regulatory proteins, tetR family ID12_13915 PF16295 ID12_13915 ID12_13920 PF00067 Cytochrome P450 ID12_13920 PF00175 Oxidoreductase NAD-binding domain ID12_13920 PF00258 Flavodoxin ID12_13920 PF00667 FAD binding domain ID12_13925 PF00089 Trypsin ID12_13930 PF13231 ID12_13930 ID12_13935 PF14040 ID12_13935 ID12_13940 PF01740 STAS domain ID12_13945 PF16800 ID12_13945 ID12_13955 PF00717 Peptidase S24-like ID12_13955 PF01726 LexA DNA binding domain ID12_13960 PF01476 LysM domain ID12_13965 PF00239 Resolvase, N terminal domain ID12_13970 PF05979 Bacterial protein of unknown function (DUF896) ID12_13975 PF00456 Transketolase, thiamine diphosphate binding domain ID12_13975 PF02779 Transketolase, pyrimidine binding domain ID12_13975 PF02780 Transketolase, C-terminal domain ID12_13980 PF10747 Protein of unknown function (DUF2522) ID12_13985 PF03672 ID12_13985 ID12_13990 PF09388 Spo0E like sporulation regulatory protein ID12_13995 PF02683 ID12_13995 ID12_14000 PF07301 ID12_14000 ID12_14005 PF11084 ID12_14005 ID12_14015 PF08179 ID12_14015 ID12_14020 PF08175 ID12_14020 ID12_14025 PF00330 Aconitase family (aconitate hydratase) ID12_14025 PF00694 Aconitase C-terminal domain ID12_14030 PF00578 AhpC/TSA family ID12_14040 PF08177 ID12_14040 ID12_14050 PF03061 Thioesterase superfamily ID12_14060 PF01521 Iron-sulphur cluster biosynthesis ID12_14065 PF02660 ID12_14065 ID12_14070 PF13380 CoA binding domain ID12_14075 PF00204 DNA gyrase B ID12_14075 PF00986 DNA gyrase B subunit, carboxyl terminus ID12_14075 PF01751 Toprim domain ID12_14075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_14080 PF00521 DNA gyrase/topoisomerase IV, subunit A ID12_14080 PF03989 DNA gyrase C-terminal domain, beta-propeller ID12_14095 PF07690 Major Facilitator Superfamily ID12_14100 PF00180 Isocitrate/isopropylmalate dehydrogenase ID12_14105 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_14105 PF12464 Maltose acetyltransferase ID12_14105 PF14602 Hexapeptide repeat of succinyl-transferase ID12_14110 PF01451 Low molecular weight phosphotyrosine protein phosphatase ID12_14115 PF02040 ID12_14115 ID12_14120 PF01022 Bacterial regulatory protein, arsR family ID12_14130 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_14135 PF01323 DSBA-like thioredoxin domain ID12_14140 PF02525 Flavodoxin-like fold ID12_14145 PF13460 NADH(P)-binding ID12_14150 PF00440 Bacterial regulatory proteins, tetR family ID12_14155 PF02525 Flavodoxin-like fold ID12_14160 PF01638 HxlR-like helix-turn-helix ID12_14170 PF00291 Pyridoxal-phosphate dependent enzyme ID12_14175 PF01042 Endoribonuclease L-PSP ID12_14180 PF08348 ID12_14180 ID12_14180 PF13309 ID12_14180 ID12_14185 PF00440 Bacterial regulatory proteins, tetR family ID12_14185 PF02909 Tetracyclin repressor, C-terminal all-alpha domain ID12_14190 PF01494 FAD binding domain ID12_14200 PF13599 Pentapeptide repeats (9 copies) ID12_14205 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ID12_14210 PF07859 alpha/beta hydrolase fold ID12_14215 PF13411 MerR HTH family regulatory protein ID12_14220 PF00232 Glycosyl hydrolase family 1 ID12_14225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ID12_14225 PF00367 phosphotransferase system, EIIB ID12_14225 PF02378 Phosphotransferase system, EIIC ID12_14230 PF00874 PRD domain ID12_14230 PF03123 CAT RNA binding domain ID12_14235 PF09685 ID12_14235 ID12_14240 PF00512 His Kinase A (phospho-acceptor) domain ID12_14240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_14245 PF00072 Response regulator receiver domain ID12_14245 PF00486 Transcriptional regulatory protein, C terminal ID12_14250 PF17189 ID12_14250 ID12_14255 PF03422 Carbohydrate binding module (family 6) ID12_14255 PF04616 Glycosyl hydrolases family 43 ID12_14260 PF00171 Aldehyde dehydrogenase family ID12_14265 PF02056 Family 4 glycosyl hydrolase ID12_14265 PF11975 Family 4 glycosyl hydrolase C-terminal domain ID12_14270 PF00528 Binding-protein-dependent transport system inner membrane component ID12_14275 PF00528 Binding-protein-dependent transport system inner membrane component ID12_14280 PF01547 Bacterial extracellular solute-binding protein ID12_14290 PF00356 Bacterial regulatory proteins, lacI family ID12_14290 PF13377 Periplasmic binding protein-like domain ID12_14295 PF00834 Ribulose-phosphate 3 epimerase family ID12_14300 PF03611 ID12_14300 ID12_14305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_14310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_14310 PF00874 PRD domain ID12_14310 PF05043 Mga helix-turn-helix domain ID12_14310 PF08279 HTH domain ID12_14320 PF00583 Acetyltransferase (GNAT) family ID12_14325 PF00155 Aminotransferase class I and II ID12_14325 PF00392 Bacterial regulatory proteins, gntR family ID12_14345 PF13673 Acetyltransferase (GNAT) domain ID12_14355 PF01047 MarR family ID12_14360 PF07690 Major Facilitator Superfamily ID12_14365 PF01116 Fructose-bisphosphate aldolase class-II ID12_14370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ID12_14375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_14375 PF02378 Phosphotransferase system, EIIC ID12_14380 PF00294 pfkB family carbohydrate kinase ID12_14385 PF01380 SIS domain ID12_14385 PF01418 Helix-turn-helix domain, rpiR family ID12_14390 PF13091 PLD-like domain ID12_14395 PF04657 ID12_14395 ID12_14400 PF00027 Cyclic nucleotide-binding domain ID12_14400 PF13545 Crp-like helix-turn-helix domain ID12_14405 PF04657 ID12_14405 ID12_14410 PF00171 Aldehyde dehydrogenase family ID12_14425 PF00175 Oxidoreductase NAD-binding domain ID12_14425 PF00258 Flavodoxin ID12_14425 PF00667 FAD binding domain ID12_14435 PF00501 AMP-binding enzyme ID12_14435 PF13193 AMP-binding enzyme C-terminal domain ID12_14435 PF16177 ID12_14435 ID12_14440 PF01039 Carboxyl transferase domain ID12_14445 PF00378 Enoyl-CoA hydratase/isomerase family ID12_14455 PF00364 Biotin-requiring enzyme ID12_14460 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ID12_14460 PF02785 Biotin carboxylase C-terminal domain ID12_14460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ID12_14465 PF00501 AMP-binding enzyme ID12_14465 PF13193 AMP-binding enzyme C-terminal domain ID12_14470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ID12_14470 PF02770 Acyl-CoA dehydrogenase, middle domain ID12_14470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ID12_14475 PF02638 ID12_14475 ID12_14480 PF13350 Tyrosine phosphatase family ID12_14485 PF00455 ID12_14485 ID12_14485 PF08220 DeoR-like helix-turn-helix domain ID12_14490 PF14552 Tautomerase enzyme ID12_14500 PF05651 ID12_14500 ID12_14500 PF13556 PucR C-terminal helix-turn-helix domain ID12_14505 PF01565 FAD binding domain ID12_14505 PF02913 FAD linked oxidases, C-terminal domain ID12_14510 PF02754 ID12_14510 ID12_14510 PF13183 4Fe-4S dicluster domain ID12_14515 PF03323 ID12_14515 ID12_14520 PF03845 ID12_14520 ID12_14525 PF05504 Spore germination B3/ GerAC like, C-terminal ID12_14530 PF12728 Helix-turn-helix domain ID12_14535 PF04138 ID12_14535 ID12_14540 PF00483 Nucleotidyl transferase ID12_14545 PF09335 ID12_14545 ID12_14550 PF02602 Uroporphyrinogen-III synthase HemD ID12_14555 PF01184 ID12_14555 ID12_14560 PF00296 Luciferase-like monooxygenase ID12_14575 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_14580 PF01554 MatE ID12_14585 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ID12_14590 PF01095 Pectinesterase ID12_14595 PF04239 Protein of unknown function (DUF421) ID12_14600 PF00355 Rieske [2Fe-2S] domain ID12_14605 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ID12_14605 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ID12_14605 PF04324 BFD-like [2Fe-2S] binding domain ID12_14605 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_14610 PF00384 Molybdopterin oxidoreductase ID12_14610 PF01568 Molydopterin dinucleotide binding domain ID12_14610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ID12_14615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ID12_14615 PF04324 BFD-like [2Fe-2S] binding domain ID12_14615 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_14620 PF07690 Major Facilitator Superfamily ID12_14625 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_14625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ID12_14630 PF00310 Glutamine amidotransferases class-II ID12_14630 PF01493 GXGXG motif ID12_14630 PF01645 Conserved region in glutamate synthase ID12_14630 PF04898 Glutamate synthase central domain ID12_14635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_14635 PF03466 LysR substrate binding domain ID12_14640 PF00005 ABC transporter ID12_14640 PF00664 ABC transporter transmembrane region ID12_14645 PF00005 ABC transporter ID12_14645 PF00664 ABC transporter transmembrane region ID12_14650 PF13411 MerR HTH family regulatory protein ID12_14655 PF00583 Acetyltransferase (GNAT) family ID12_14660 PF00171 Aldehyde dehydrogenase family ID12_14665 PF00696 Amino acid kinase family ID12_14665 PF01472 PUA domain ID12_14670 PF03807 NADP oxidoreductase coenzyme F420-dependent ID12_14670 PF14748 Pyrroline-5-carboxylate reductase dimerisation ID12_14675 PF00067 Cytochrome P450 ID12_14680 PF00384 Molybdopterin oxidoreductase ID12_14680 PF01568 Molydopterin dinucleotide binding domain ID12_14680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ID12_14685 PF00457 Glycosyl hydrolases family 11 ID12_14690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ID12_14690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ID12_14695 PF01261 Xylose isomerase-like TIM barrel ID12_14700 PF00480 ROK family ID12_14700 PF13412 Winged helix-turn-helix DNA-binding ID12_14705 PF04616 Glycosyl hydrolases family 43 ID12_14710 PF13347 MFS/sugar transport protein ID12_14715 PF01588 Putative tRNA binding domain ID12_14725 PF14158 ID12_14725 ID12_14730 PF13761 ID12_14730 ID12_14740 PF13305 WHG domain ID12_14745 PF00753 Metallo-beta-lactamase superfamily ID12_14750 PF14526 Integron-associated effector binding protein ID12_14755 PF08279 HTH domain ID12_14755 PF13280 ID12_14755 ID12_14770 PF01022 Bacterial regulatory protein, arsR family ID12_14775 PF00324 Amino acid permease ID12_14780 PF13702 Lysozyme-like ID12_14785 PF13714 Phosphoenolpyruvate phosphomutase ID12_14790 PF03972 MmgE/PrpD family ID12_14795 PF00285 Citrate synthase ID12_14800 PF04238 ID12_14800 ID12_14810 PF01476 LysM domain ID12_14810 PF06725 3D domain ID12_14815 PF00270 DEAD/DEAH box helicase ID12_14815 PF00271 Helicase conserved C-terminal domain ID12_14815 PF00570 HRDC domain ID12_14815 PF09382 RQC domain ID12_14815 PF16124 ID12_14815 ID12_14820 PF01258 Prokaryotic dksA/traR C4-type zinc finger ID12_14825 PF13460 NADH(P)-binding ID12_14830 PF08000 Bacterial PH domain ID12_14845 PF00171 Aldehyde dehydrogenase family ID12_14850 PF13243 Prenyltransferase-like ID12_14850 PF13249 Prenyltransferase-like ID12_14855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ID12_14855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ID12_14860 PF01758 Sodium Bile acid symporter family ID12_14865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ID12_14865 PF00364 Biotin-requiring enzyme ID12_14865 PF02817 e3 binding domain ID12_14870 PF00676 Dehydrogenase E1 component ID12_14870 PF02779 Transketolase, pyrimidine binding domain ID12_14870 PF16078 ID12_14870 ID12_14870 PF16870 ID12_14870 ID12_14875 PF00092 von Willebrand factor type A domain ID12_14880 PF07728 AAA domain (dynein-related subfamily) ID12_14885 PF00080 Copper/zinc superoxide dismutase (SODC) ID12_14890 PF00877 NlpC/P60 family ID12_14890 PF01476 LysM domain ID12_14895 PF02457 DisA bacterial checkpoint controller nucleotide-binding ID12_14895 PF10372 Bacterial membrane-spanning protein N-terminus ID12_14905 PF01554 MatE ID12_14910 PF02585 GlcNAc-PI de-N-acetylase ID12_14915 PF08830 Protein of unknown function (DUF1806) ID12_14925 PF00892 EamA-like transporter family ID12_14940 PF01638 HxlR-like helix-turn-helix ID12_14945 PF00881 Nitroreductase family ID12_14950 PF11755 ID12_14950 ID12_14955 PF00474 Sodium:solute symporter family ID12_14960 PF01471 Putative peptidoglycan binding domain ID12_14960 PF03572 Peptidase family S41 ID12_14960 PF13180 PDZ domain ID12_14965 PF08241 Methyltransferase domain ID12_14975 PF02557 D-alanyl-D-alanine carboxypeptidase ID12_14980 PF01048 Phosphorylase superfamily ID12_14985 PF14191 ID12_14985 ID12_14990 PF01569 PAP2 superfamily ID12_15010 PF06855 Protein of unknown function (DUF1250) ID12_15015 PF14122 ID12_15015 ID12_15020 PF04055 Radical SAM superfamily ID12_15020 PF12544 Lysine-2,3-aminomutase ID12_15025 PF00158 Sigma-54 interaction domain ID12_15025 PF00989 PAS fold ID12_15025 PF02954 Bacterial regulatory protein, Fis family ID12_15030 PF00535 Glycosyl transferase family 2 ID12_15045 PF12996 ID12_15045 ID12_15045 PF13524 Glycosyl transferases group 1 ID12_15050 PF02348 Cytidylyltransferase ID12_15055 PF02719 Polysaccharide biosynthesis protein ID12_15060 PF01641 SelR domain ID12_15065 PF01625 Peptide methionine sulfoxide reductase ID12_15070 PF01047 MarR family ID12_15080 PF14344 ID12_15080 ID12_15085 PF17431 ID12_15085 ID12_15090 PF09911 ID12_15090 ID12_15095 PF13472 GDSL-like Lipase/Acylhydrolase family ID12_15100 PF02630 SCO1/SenC ID12_15105 PF02645 Uncharacterised protein, DegV family COG1307 ID12_15110 PF10751 ID12_15110 ID12_15115 PF00291 Pyridoxal-phosphate dependent enzyme ID12_15115 PF00585 C-terminal regulatory domain of Threonine dehydratase ID12_15120 PF14532 Sigma-54 interaction domain ID12_15125 PF03006 ID12_15125 ID12_15135 PF00186 Dihydrofolate reductase ID12_15140 PF00303 Thymidylate synthase ID12_15145 PF04608 Phosphatidylglycerophosphatase A ID12_15150 PF14005 ID12_15150 ID12_15160 PF04445 Putative SAM-dependent methyltransferase ID12_15165 PF06491 Disulphide isomerase ID12_15170 PF00920 Dehydratase family ID12_15175 PF08712 Scaffold protein Nfu/NifU N terminal ID12_15175 PF13646 HEAT repeats ID12_15175 PF13769 ID12_15175 ID12_15180 PF01966 HD domain ID12_15185 PF00255 Glutathione peroxidase ID12_15190 PF01268 Formate--tetrahydrofolate ligase ID12_15195 PF04204 Homoserine O-succinyltransferase ID12_15200 PF00534 Glycosyl transferases group 1 ID12_15200 PF06925 ID12_15200 ID12_15205 PF01987 Mitochondrial biogenesis AIM24 ID12_15210 PF00313 'Cold-shock' DNA-binding domain ID12_15220 PF10782 ID12_15220 ID12_15225 PF13456 Reverse transcriptase-like ID12_15230 PF02592 ID12_15230 ID12_15235 PF13456 Reverse transcriptase-like ID12_15245 PF01367 5'-3' exonuclease, C-terminal SAM fold ID12_15245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ID12_15255 PF10752 ID12_15255 ID12_15260 PF00350 Dynamin family ID12_15265 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ID12_15270 PF00195 Chalcone and stilbene synthases, N-terminal domain ID12_15270 PF02797 Chalcone and stilbene synthases, C-terminal domain ID12_15275 PF04229 GrpB protein ID12_15280 PF01522 Polysaccharide deacetylase ID12_15285 PF00860 Permease family ID12_15290 PF00156 Phosphoribosyl transferase domain ID12_15295 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ID12_15300 PF13307 Helicase C-terminal domain ID12_15310 PF01170 Putative RNA methylase family UPF0020 ID12_15310 PF02926 THUMP domain ID12_15315 PF05103 DivIVA protein ID12_15320 PF06908 Protein of unknown function (DUF1273) ID12_15330 PF13482 RNase_H superfamily ID12_15335 PF00270 DEAD/DEAH box helicase ID12_15335 PF00271 Helicase conserved C-terminal domain ID12_15335 PF09369 ID12_15335 ID12_15340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ID12_15345 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ID12_15350 PF00011 Hsp20/alpha crystallin family ID12_15355 PF14179 ID12_15355 ID12_15360 PF08807 Bacterial domain of unknown function (DUF1798) ID12_15365 PF17522 ID12_15365 ID12_15375 PF10720 ID12_15375 ID12_15380 PF03838 Recombination protein U ID12_15385 PF00905 Penicillin binding protein transpeptidase domain ID12_15385 PF00912 Transglycosylase ID12_15395 PF00633 Helix-hairpin-helix motif ID12_15395 PF00730 HhH-GPD superfamily base excision DNA repair protein ID12_15395 PF10576 Iron-sulfur binding domain of endonuclease III ID12_15400 PF07261 Replication initiation and membrane attachment ID12_15405 PF00152 tRNA synthetases class II (D, K and N) ID12_15405 PF01336 OB-fold nucleic acid binding domain ID12_15410 PF03413 Peptidase propeptide and YPEB domain ID12_15420 PF00929 Exonuclease ID12_15420 PF06733 DEAD_2 ID12_15420 PF13307 Helicase C-terminal domain ID12_15425 PF02261 Aspartate decarboxylase ID12_15430 PF02569 Pantoate-beta-alanine ligase ID12_15435 PF02548 Ketopantoate hydroxymethyltransferase ID12_15440 PF02237 Biotin protein ligase C terminal domain ID12_15440 PF03099 Biotin/lipoate A/B protein ligase family ID12_15440 PF08279 HTH domain ID12_15445 PF01743 Poly A polymerase head domain ID12_15445 PF12627 Probable RNA and SrmB- binding site of polymerase A ID12_15445 PF13735 tRNA nucleotidyltransferase domain 2 putative ID12_15450 PF00534 Glycosyl transferases group 1 ID12_15450 PF13439 Glycosyltransferase Family 4 ID12_15455 PF02585 GlcNAc-PI de-N-acetylase ID12_15460 PF02142 MGS-like domain ID12_15465 PF01113 Dihydrodipicolinate reductase, N-terminus ID12_15465 PF05173 Dihydrodipicolinate reductase, C-terminus ID12_15470 PF03819 MazG nucleotide pyrophosphohydrolase domain ID12_15475 PF02588 ID12_15475 ID12_15475 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ID12_15480 PF09577 ID12_15480 ID12_15485 PF07187 ID12_15485 ID12_15490 PF00032 Cytochrome b(C-terminal)/b6/petD ID12_15490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ID12_15495 PF00033 Cytochrome b(N-terminal)/b6/petB ID12_15500 PF00355 Rieske [2Fe-2S] domain ID12_15500 PF08802 Cytochrome B6-F complex Fe-S subunit ID12_15505 PF10673 ID12_15505 ID12_15510 PF08858 IDEAL domain ID12_15510 PF08864 UPF0302 domain ID12_15515 PF13432 Tetratricopeptide repeat ID12_15515 PF14559 Tetratricopeptide repeat ID12_15520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ID12_15525 PF01842 ACT domain ID12_15525 PF02153 Prephenate dehydrogenase ID12_15530 PF00155 Aminotransferase class I and II ID12_15535 PF00290 Tryptophan synthase alpha chain ID12_15540 PF00291 Pyridoxal-phosphate dependent enzyme ID12_15545 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ID12_15550 PF00218 Indole-3-glycerol phosphate synthase ID12_15555 PF00591 Glycosyl transferase family, a/b domain ID12_15555 PF02885 Glycosyl transferase family, helical bundle domain ID12_15560 PF00425 chorismate binding enzyme ID12_15560 PF04715 Anthranilate synthase component I, N terminal region ID12_15565 PF07736 Chorismate mutase type I ID12_15570 PF01761 3-dehydroquinate synthase ID12_15575 PF01264 Chorismate synthase ID12_15580 PF01739 CheR methyltransferase, SAM binding domain ID12_15580 PF03705 CheR methyltransferase, all-alpha domain ID12_15585 PF00334 Nucleoside diphosphate kinase ID12_15590 PF00348 Polyprenyl synthetase ID12_15595 PF01209 ubiE/COQ5 methyltransferase family ID12_15600 PF07307 ID12_15600 ID12_15605 PF02081 Tryptophan RNA-binding attenuator protein ID12_15610 PF01227 GTP cyclohydrolase I ID12_15615 PF00216 Bacterial DNA-binding protein ID12_15620 PF09547 ID12_15620 ID12_15630 PF10966 ID12_15630 ID12_15635 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ID12_15635 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ID12_15640 PF01926 50S ribosome-binding GTPase ID12_15640 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ID12_15650 PF14045 ID12_15650 ID12_15665 PF01070 FMN-dependent dehydrogenase ID12_15670 PF00575 S1 RNA binding domain ID12_15675 PF02224 Cytidylate kinase ID12_15680 PF17313 ID12_15680 ID12_15685 PF07238 PilZ domain ID12_15685 PF12945 Flagellar protein YcgR ID12_15690 PF03413 Peptidase propeptide and YPEB domain ID12_15690 PF14620 ID12_15690 ID12_15695 PF01471 Putative peptidoglycan binding domain ID12_15695 PF07486 Cell Wall Hydrolase ID12_15700 PF13367 ID12_15700 ID12_15705 PF13738 Pyridine nucleotide-disulphide oxidoreductase ID12_15710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ID12_15710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ID12_15715 PF05389 Negative regulator of genetic competence (MecA) ID12_15720 PF12850 Calcineurin-like phosphoesterase superfamily domain ID12_15725 PF10864 ID12_15725 ID12_15730 PF01476 LysM domain ID12_15735 PF02517 CAAX protease self-immunity ID12_15740 PF00270 DEAD/DEAH box helicase ID12_15740 PF00271 Helicase conserved C-terminal domain ID12_15745 PF14493 ID12_15745 ID12_15750 PF13370 4Fe-4S single cluster domain ID12_15755 PF12822 Protein of unknown function (DUF3816) ID12_15760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ID12_15760 PF01842 ACT domain ID12_15760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ID12_15765 PF01476 LysM domain ID12_15765 PF01551 Peptidase family M23 ID12_15775 PF04542 Sigma-70 region 2 ID12_15775 PF08281 Sigma-70, region 4 ID12_15780 PF00512 His Kinase A (phospho-acceptor) domain ID12_15780 PF00672 HAMP domain ID12_15780 PF00989 PAS fold ID12_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_15785 PF00072 Response regulator receiver domain ID12_15785 PF00486 Transcriptional regulatory protein, C terminal ID12_15790 PF01578 ID12_15790 ID12_15795 PF05140 ID12_15795 ID12_15800 PF00578 AhpC/TSA family ID12_15805 PF00849 RNA pseudouridylate synthase ID12_15805 PF01479 S4 domain ID12_15810 PF07670 Nucleoside recognition ID12_15815 PF07670 Nucleoside recognition ID12_15820 PF00768 D-alanyl-D-alanine carboxypeptidase ID12_15820 PF07943 Penicillin-binding protein 5, C-terminal domain ID12_15825 PF13047 ID12_15825 ID12_15830 PF04079 Putative transcriptional regulators (Ypuh-like) ID12_15835 PF02616 ScpA/B protein ID12_15845 PF03745 Domain of unknown function (DUF309) ID12_15850 PF00583 Acetyltransferase (GNAT) family ID12_15855 PF00885 6,7-dimethyl-8-ribityllumazine synthase ID12_15865 PF00677 Lumazine binding domain ID12_15875 PF09932 ID12_15875 ID12_15880 PF00440 Bacterial regulatory proteins, tetR family ID12_15885 PF07690 Major Facilitator Superfamily ID12_15890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ID12_15895 PF06207 ID12_15895 ID12_15900 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ID12_15900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ID12_15905 PF03323 ID12_15905 ID12_15910 PF14097 ID12_15910 ID12_15915 PF03862 ID12_15915 ID12_15920 PF07451 Stage V sporulation protein AD (SpoVAD) ID12_15925 PF03862 ID12_15925 ID12_15930 PF13782 ID12_15930 ID12_15935 PF12164 Stage V sporulation protein AA ID12_15940 PF04539 Sigma-70 region 3 ID12_15940 PF04542 Sigma-70 region 2 ID12_15940 PF04545 Sigma-70, region 4 ID12_15945 PF13581 Histidine kinase-like ATPase domain ID12_15950 PF01740 STAS domain ID12_15955 PF00768 D-alanyl-D-alanine carboxypeptidase ID12_15955 PF07943 Penicillin-binding protein 5, C-terminal domain ID12_15960 PF01048 Phosphorylase superfamily ID12_15965 PF01676 Metalloenzyme superfamily ID12_15970 PF00589 Phage integrase family ID12_15970 PF02899 Phage integrase, N-terminal SAM-like domain ID12_15975 PF14004 ID12_15975 ID12_15980 PF01475 Ferric uptake regulator family ID12_15985 PF01944 ID12_15985 ID12_15990 PF00082 Subtilase family ID12_16000 PF13673 Acetyltransferase (GNAT) domain ID12_16005 PF13263 PHP-associated ID12_16010 PF00293 NUDIX domain ID12_16015 PF00248 Aldo/keto reductase family ID12_16020 PF13025 ID12_16020 ID12_16025 PF12146 Putative lysophospholipase ID12_16030 PF13424 Tetratricopeptide repeat ID12_16035 PF10827 ID12_16035 ID12_16040 PF01521 Iron-sulphur cluster biosynthesis ID12_16045 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel ID12_16050 PF04229 GrpB protein ID12_16050 PF13673 Acetyltransferase (GNAT) domain ID12_16055 PF00583 Acetyltransferase (GNAT) family ID12_16060 PF10787 ID12_16060 ID12_16065 PF00817 impB/mucB/samB family ID12_16065 PF11798 IMS family HHH motif ID12_16065 PF11799 impB/mucB/samB family C-terminal domain ID12_16070 PF08863 ID12_16070 ID12_16075 PF07690 Major Facilitator Superfamily ID12_16080 PF00485 Phosphoribulokinase / Uridine kinase family ID12_16085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ID12_16085 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_16090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_16095 PF00106 short chain dehydrogenase ID12_16100 PF00753 Metallo-beta-lactamase superfamily ID12_16110 PF03807 NADP oxidoreductase coenzyme F420-dependent ID12_16110 PF14748 Pyrroline-5-carboxylate reductase dimerisation ID12_16115 PF12867 DinB superfamily ID12_16120 PF01546 Peptidase family M20/M25/M40 ID12_16125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ID12_16130 PF00561 alpha/beta hydrolase fold ID12_16135 PF12897 Alanine-glyoxylate amino-transferase ID12_16140 PF12706 Beta-lactamase superfamily domain ID12_16145 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ID12_16145 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ID12_16150 PF00392 Bacterial regulatory proteins, gntR family ID12_16150 PF07702 UTRA domain ID12_16155 PF00232 Glycosyl hydrolase family 1 ID12_16160 PF02378 Phosphotransferase system, EIIC ID12_16165 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit ID12_16170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ID12_16180 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_16185 PF06800 ID12_16185 ID12_16190 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ID12_16190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ID12_16195 PF00817 impB/mucB/samB family ID12_16195 PF11798 IMS family HHH motif ID12_16195 PF11799 impB/mucB/samB family C-terminal domain ID12_16205 PF02096 60Kd inner membrane protein ID12_16210 PF01584 CheW-like domain ID12_16215 PF01546 Peptidase family M20/M25/M40 ID12_16215 PF07687 Peptidase dimerisation domain ID12_16220 PF01039 Carboxyl transferase domain ID12_16225 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ID12_16235 PF03734 L,D-transpeptidase catalytic domain ID12_16240 PF06081 ID12_16240 ID12_16240 PF11728 DUF939 C-terminal domain ID12_16245 PF00005 ABC transporter ID12_16250 PF00528 Binding-protein-dependent transport system inner membrane component ID12_16255 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_16260 PF06491 Disulphide isomerase ID12_16265 PF00781 Diacylglycerol kinase catalytic domain ID12_16270 PF14150 ID12_16270 ID12_16275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ID12_16275 PF00364 Biotin-requiring enzyme ID12_16275 PF02817 e3 binding domain ID12_16280 PF02779 Transketolase, pyrimidine binding domain ID12_16280 PF02780 Transketolase, C-terminal domain ID12_16285 PF00676 Dehydrogenase E1 component ID12_16290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ID12_16290 PF07992 Pyridine nucleotide-disulphide oxidoreductase ID12_16295 PF00871 Acetokinase family ID12_16300 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ID12_16300 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ID12_16305 PF01515 Phosphate acetyl/butaryl transferase ID12_16315 PF00158 Sigma-54 interaction domain ID12_16315 PF00989 PAS fold ID12_16315 PF02954 Bacterial regulatory protein, Fis family ID12_16320 PF11118 ID12_16320 ID12_16325 PF03009 Glycerophosphoryl diester phosphodiesterase family ID12_16340 PF00072 Response regulator receiver domain ID12_16340 PF08769 Sporulation initiation factor Spo0A C terminal ID12_16345 PF00595 PDZ domain (Also known as DHR or GLGF) ID12_16345 PF05580 ID12_16345 ID12_16350 PF02463 RecF/RecN/SMC N terminal domain ID12_16355 PF01316 Arginine repressor, DNA binding domain ID12_16355 PF02863 Arginine repressor, C-terminal domain ID12_16360 PF01479 S4 domain ID12_16360 PF01728 FtsJ-like methyltransferase ID12_16365 PF02779 Transketolase, pyrimidine binding domain ID12_16365 PF02780 Transketolase, C-terminal domain ID12_16365 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ID12_16370 PF00348 Polyprenyl synthetase ID12_16375 PF02609 Exonuclease VII small subunit ID12_16380 PF02601 ID12_16380 ID12_16380 PF13742 ID12_16380 ID12_16385 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ID12_16385 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ID12_16390 PF01029 NusB family ID12_16395 PF03780 ID12_16395 ID12_16400 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain ID12_16400 PF02785 Biotin carboxylase C-terminal domain ID12_16400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ID12_16405 PF00364 Biotin-requiring enzyme ID12_16410 PF12685 SpoIIIAH-like protein ID12_16420 PF09581 ID12_16420 ID12_16425 PF09546 ID12_16425 ID12_16430 PF06686 ID12_16430 ID12_16435 PF06686 ID12_16435 ID12_16440 PF09548 ID12_16440 ID12_16450 PF10942 ID12_16450 ID12_16455 PF01132 Elongation factor P (EF-P) OB domain ID12_16455 PF08207 Elongation factor P (EF-P) KOW-like domain ID12_16455 PF09285 Elongation factor P, C-terminal ID12_16460 PF00557 Metallopeptidase family M24 ID12_16460 PF01321 Creatinase/Prolidase N-terminal domain ID12_16465 PF01220 Dehydroquinase class II ID12_16470 PF11085 ID12_16470 ID12_16475 PF07136 ID12_16475 ID12_16485 PF01734 Patatin-like phospholipase ID12_16490 PF01325 Iron dependent repressor, N-terminal DNA binding domain ID12_16490 PF02742 Iron dependent repressor, metal binding and dimerisation domain ID12_16495 PF03099 Biotin/lipoate A/B protein ligase family ID12_16500 PF00581 Rhodanese-like domain ID12_16505 PF02347 Glycine cleavage system P-protein ID12_16510 PF02347 Glycine cleavage system P-protein ID12_16515 PF01571 Aminomethyltransferase folate-binding domain ID12_16515 PF08669 Glycine cleavage T-protein C-terminal barrel domain ID12_16520 PF00176 SNF2 family N-terminal domain ID12_16520 PF00271 Helicase conserved C-terminal domain ID12_16525 PF11079 ID12_16525 ID12_16535 PF01381 Helix-turn-helix ID12_16535 PF08671 Anti-repressor SinI ID12_16540 PF12389 ID12_16540 ID12_16545 PF00717 Peptidase S24-like ID12_16555 PF13028 Protein of unknown function (DUF3889) ID12_16560 PF14038 ID12_16560 ID12_16565 PF14173 ID12_16565 ID12_16570 PF15980 ID12_16570 ID12_16585 PF07963 Prokaryotic N-terminal methylation motif ID12_16590 PF00482 Type II secretion system (T2SS), protein F ID12_16595 PF00437 Type II/IV secretion system protein ID12_16600 PF01740 STAS domain ID12_16600 PF14361 ID12_16600 ID12_16615 PF03960 ArsC family ID12_16620 PF11117 ID12_16620 ID12_16625 PF00753 Metallo-beta-lactamase superfamily ID12_16630 PF10958 ID12_16630 ID12_16635 PF01910 Domain of unknown function DUF77 ID12_16640 PF07690 Major Facilitator Superfamily ID12_16645 PF00246 Zinc carboxypeptidase ID12_16650 PF00884 Sulfatase ID12_16655 PF00480 ROK family ID12_16660 PF06014 Bacterial protein of unknown function (DUF910) ID12_16665 PF01694 Rhomboid family ID12_16665 PF13181 Tetratricopeptide repeat ID12_16665 PF13432 Tetratricopeptide repeat ID12_16680 PF01812 5-formyltetrahydrofolate cyclo-ligase family ID12_16685 PF00471 Ribosomal protein L33 ID12_16700 PF02618 YceG-like family ID12_16705 PF00005 ABC transporter ID12_16710 PF00005 ABC transporter ID12_16715 PF00528 Binding-protein-dependent transport system inner membrane component ID12_16720 PF00528 Binding-protein-dependent transport system inner membrane component ID12_16725 PF12849 PBP superfamily domain ID12_16730 PF00905 Penicillin binding protein transpeptidase domain ID12_16730 PF03717 Penicillin-binding Protein dimerisation domain ID12_16735 PF07690 Major Facilitator Superfamily ID12_16740 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ID12_16740 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ID12_16745 PF04306 ID12_16745 ID12_16750 PF06691 ID12_16750 ID12_16755 PF13302 Acetyltransferase (GNAT) domain ID12_16765 PF04551 GcpE protein ID12_16770 PF06781 ID12_16770 ID12_16775 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) ID12_16780 PF00480 ROK family ID12_16785 PF01475 Ferric uptake regulator family ID12_16790 PF00950 ID12_16790 ID12_16795 PF00005 ABC transporter ID12_16800 PF02588 ID12_16800 ID12_16800 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ID12_16805 PF11116 ID12_16805 ID12_16810 PF01261 Xylose isomerase-like TIM barrel ID12_16815 PF00270 DEAD/DEAH box helicase ID12_16815 PF00271 Helicase conserved C-terminal domain ID12_16820 PF14181 ID12_16820 ID12_16825 PF02401 LytB protein ID12_16830 PF01784 NIF3 (NGG1p interacting factor 3) ID12_16835 PF04816 Family of unknown function (DUF633) ID12_16840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ID12_16845 PF00140 Sigma-70 factor, region 1 ID12_16845 PF03979 Sigma-70 factor, region 1 ID12_16845 PF04539 Sigma-70 region 3 ID12_16845 PF04542 Sigma-70 region 2 ID12_16845 PF04545 Sigma-70, region 4 ID12_16850 PF01807 CHC2 zinc finger ID12_16850 PF08275 DNA primase catalytic core, N-terminal domain ID12_16850 PF10410 DnaB-helicase binding domain of primase ID12_16850 PF13155 Toprim-like ID12_16855 PF02639 ID12_16855 ID12_16860 PF03618 ID12_16860 ID12_16865 PF00571 CBS domain ID12_16865 PF08279 HTH domain ID12_16870 PF02092 ID12_16870 ID12_16870 PF05746 DALR anticodon binding domain ID12_16875 PF02091 Glycyl-tRNA synthetase alpha subunit ID12_16880 PF02565 Recombination protein O C terminal ID12_16880 PF11967 Recombination protein O N terminal ID12_16890 PF01926 50S ribosome-binding GTPase ID12_16890 PF07650 KH domain ID12_16895 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ID12_16900 PF01219 Prokaryotic diacylglycerol kinase ID12_16905 PF02130 Uncharacterized protein family UPF0054 ID12_16910 PF01966 HD domain ID12_16910 PF07697 ID12_16910 ID12_16910 PF07698 ID12_16910 ID12_16915 PF02562 PhoH-like protein ID12_16920 PF06898 ID12_16920 ID12_16925 PF07873 YabP family ID12_16935 PF12127 ID12_16935 ID12_16940 PF01957 NfeD-like C-terminal, partner-binding ID12_16940 PF01972 Serine dehydrogenase proteinase ID12_16945 PF09424 Yqey-like protein ID12_16950 PF01165 Ribosomal protein S21 ID12_16955 PF02690 ID12_16955 ID12_16960 PF00919 Uncharacterized protein family UPF0004 ID12_16960 PF01938 TRAM domain ID12_16960 PF04055 Radical SAM superfamily ID12_16965 PF04452 RNA methyltransferase ID12_16970 PF06325 Ribosomal protein L11 methyltransferase (PrmA) ID12_16975 PF00226 DnaJ domain ID12_16975 PF00684 DnaJ central domain ID12_16975 PF01556 DnaJ C terminal domain ID12_16980 PF00012 Hsp70 protein ID12_16985 PF01025 GrpE ID12_16990 PF01628 HrcA protein C terminal domain ID12_16995 PF04055 Radical SAM superfamily ID12_16995 PF06969 HemN C-terminal domain ID12_17000 PF00009 Elongation factor Tu GTP binding domain ID12_17000 PF00679 Elongation factor G C-terminus ID12_17000 PF03144 Elongation factor Tu domain 2 ID12_17000 PF06421 GTP-binding protein LepA C-terminus ID12_17005 PF12438 ID12_17005 ID12_17010 PF07454 ID12_17010 ID12_17015 PF03418 Germination protease ID12_17020 PF01649 Ribosomal protein S20 ID12_17025 PF06144 DNA polymerase III, delta subunit ID12_17030 PF14141 ID12_17030 ID12_17035 PF00753 Metallo-beta-lactamase superfamily ID12_17035 PF03772 ID12_17035 ID12_17035 PF13567 ID12_17035 ID12_17040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ID12_17045 PF10531 SLBB domain ID12_17045 PF12836 Helix-hairpin-helix motif ID12_17050 PF03807 NADP oxidoreductase coenzyme F420-dependent ID12_17050 PF14748 Pyrroline-5-carboxylate reductase dimerisation ID12_17055 PF13649 Methyltransferase domain ID12_17060 PF02410 Oligomerisation domain ID12_17065 PF01966 HD domain ID12_17070 PF01467 Cytidylyltransferase ID12_17075 PF01985 CRS1 / YhbY (CRM) domain ID12_17080 PF01488 Shikimate / quinate 5-dehydrogenase ID12_17080 PF08501 Shikimate dehydrogenase substrate binding domain ID12_17085 PF01926 50S ribosome-binding GTPase ID12_17090 PF08282 haloacid dehalogenase-like hydrolase ID12_17090 PF13242 HAD-hyrolase-like ID12_17095 PF08970 Sporulation inhibitor A ID12_17105 PF13472 GDSL-like Lipase/Acylhydrolase family ID12_17110 PF01522 Polysaccharide deacetylase ID12_17115 PF13181 Tetratricopeptide repeat ID12_17120 PF04542 Sigma-70 region 2 ID12_17120 PF04545 Sigma-70, region 4 ID12_17125 PF13143 ID12_17125 ID12_17130 PF14430 ID12_17130 ID12_17135 PF00293 NUDIX domain ID12_17145 PF01522 Polysaccharide deacetylase ID12_17145 PF11738 Protein of unknown function (DUF3298) ID12_17155 PF13420 Acetyltransferase (GNAT) domain ID12_17160 PF09221 Bacteriocin class IId cyclical uberolysin-like ID12_17170 PF01944 ID12_17170 ID12_17180 PF00005 ABC transporter ID12_17185 PF11122 ID12_17185 ID12_17200 PF00083 Sugar (and other) transporter ID12_17210 PF02610 L-arabinose isomerase ID12_17210 PF11762 L-arabinose isomerase C-terminal domain ID12_17215 PF00596 Class II Aldolase and Adducin N-terminal domain ID12_17220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ID12_17220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ID12_17225 PF00392 Bacterial regulatory proteins, gntR family ID12_17225 PF13377 Periplasmic binding protein-like domain ID12_17230 PF00144 Beta-lactamase ID12_17235 PF01047 MarR family ID12_17240 PF01323 DSBA-like thioredoxin domain ID12_17245 PF01380 SIS domain ID12_17250 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ID12_17255 PF01638 HxlR-like helix-turn-helix ID12_17260 PF07859 alpha/beta hydrolase fold ID12_17270 PF14176 ID12_17270 ID12_17300 PF11042 ID12_17300 ID12_17325 PF00905 Penicillin binding protein transpeptidase domain ID12_17330 PF02770 Acyl-CoA dehydrogenase, middle domain ID12_17330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ID12_17330 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ID12_17335 PF00005 ABC transporter ID12_17340 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_17345 PF00528 Binding-protein-dependent transport system inner membrane component ID12_17350 PF00528 Binding-protein-dependent transport system inner membrane component ID12_17355 PF05067 Manganese containing catalase ID12_17360 PF00107 Zinc-binding dehydrogenase ID12_17360 PF08240 Alcohol dehydrogenase GroES-like domain ID12_17365 PF07690 Major Facilitator Superfamily ID12_17375 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_17380 PF00465 Iron-containing alcohol dehydrogenase ID12_17385 PF01235 ID12_17385 ID12_17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_17390 PF03466 LysR substrate binding domain ID12_17395 PF12698 ABC-2 family transporter protein ID12_17400 PF12698 ABC-2 family transporter protein ID12_17405 PF00005 ABC transporter ID12_17410 PF00107 Zinc-binding dehydrogenase ID12_17410 PF08240 Alcohol dehydrogenase GroES-like domain ID12_17415 PF08241 Methyltransferase domain ID12_17430 PF14143 ID12_17430 ID12_17435 PF01053 Cys/Met metabolism PLP-dependent enzyme ID12_17440 PF00291 Pyridoxal-phosphate dependent enzyme ID12_17445 PF01048 Phosphorylase superfamily ID12_17450 PF13489 Methyltransferase domain ID12_17455 PF10750 ID12_17455 ID12_17460 PF07423 ID12_17460 ID12_17465 PF00905 Penicillin binding protein transpeptidase domain ID12_17465 PF03717 Penicillin-binding Protein dimerisation domain ID12_17470 PF01272 Transcription elongation factor, GreA/GreB, C-term ID12_17470 PF03449 Transcription elongation factor, N-terminal ID12_17475 PF00485 Phosphoribulokinase / Uridine kinase family ID12_17480 PF01136 ID12_17480 ID12_17480 PF16325 ID12_17480 ID12_17485 PF01136 ID12_17485 ID12_17490 PF01596 O-methyltransferase ID12_17495 PF02618 YceG-like family ID12_17500 PF00108 Thiolase, N-terminal domain ID12_17500 PF02803 Thiolase, C-terminal domain ID12_17505 PF00501 AMP-binding enzyme ID12_17505 PF13193 AMP-binding enzyme C-terminal domain ID12_17510 PF02632 BioY family ID12_17515 PF06949 ID12_17515 ID12_17520 PF03652 Uncharacterised protein family (UPF0081) ID12_17525 PF06135 ID12_17525 ID12_17530 PF01411 tRNA synthetases class II (A) ID12_17530 PF02272 DHHA1 domain ID12_17530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ID12_17535 PF01594 ID12_17535 ID12_17540 PF00005 ABC transporter ID12_17545 PF00497 Bacterial extracellular solute-binding proteins, family 3 ID12_17550 PF00528 Binding-protein-dependent transport system inner membrane component ID12_17555 PF00528 Binding-protein-dependent transport system inner membrane component ID12_17570 PF05239 PRC-barrel domain ID12_17575 PF13538 UvrD-like helicase C-terminal domain ID12_17575 PF13604 AAA domain ID12_17575 PF14490 Helix-hairpin-helix containing domain ID12_17580 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 ID12_17580 PF13181 Tetratricopeptide repeat ID12_17580 PF14559 Tetratricopeptide repeat ID12_17585 PF03054 tRNA methyl transferase ID12_17590 PF00266 Aminotransferase class-V ID12_17595 PF02082 Transcriptional regulator ID12_17600 PF05496 Holliday junction DNA helicase ruvB N-terminus ID12_17600 PF12002 MgsA AAA+ ATPase C terminal ID12_17600 PF16193 ID12_17600 ID12_17605 PF00899 ThiF family ID12_17610 PF00152 tRNA synthetases class II (D, K and N) ID12_17610 PF01336 OB-fold nucleic acid binding domain ID12_17610 PF02938 GAD domain ID12_17615 PF03129 Anticodon binding domain ID12_17615 PF13393 Histidyl-tRNA synthetase ID12_17625 PF01520 N-acetylmuramoyl-L-alanine amidase ID12_17625 PF08239 Bacterial SH3 domain ID12_17630 PF02580 D-Tyr-tRNA(Tyr) deacylase ID12_17635 PF02824 TGS domain ID12_17635 PF04607 Region found in RelA / SpoT proteins ID12_17635 PF13291 ACT domain ID12_17635 PF13328 HD domain ID12_17640 PF00156 Phosphoribosyl transferase domain ID12_17645 PF01368 DHH family ID12_17645 PF02272 DHHA1 domain ID12_17645 PF10141 ID12_17645 ID12_17650 PF06305 ID12_17650 ID12_17655 PF02080 TrkA-C domain ID12_17660 PF02355 Protein export membrane protein ID12_17660 PF07549 SecD/SecF GG Motif ID12_17665 PF13797 ID12_17665 ID12_17670 PF01943 ID12_17670 ID12_17670 PF14667 Polysaccharide biosynthesis C-terminal domain ID12_17675 PF04239 Protein of unknown function (DUF421) ID12_17680 PF12670 ID12_17680 ID12_17685 PF02699 Preprotein translocase subunit ID12_17690 PF01702 Queuine tRNA-ribosyltransferase ID12_17695 PF02547 Queuosine biosynthesis protein ID12_17700 PF11146 ID12_17700 ID12_17705 PF05491 Holliday junction DNA helicase ruvB C-terminus ID12_17705 PF05496 Holliday junction DNA helicase ruvB N-terminus ID12_17710 PF01330 RuvA N terminal domain ID12_17710 PF07499 RuvA, C-terminal domain ID12_17710 PF14520 Helix-hairpin-helix domain ID12_17715 PF08955 BofC C-terminal domain ID12_17715 PF08977 Bypass of Forespore C, N terminal ID12_17735 PF01964 ThiC family ID12_17735 PF13667 ThiC-associated domain ID12_17740 PF01810 ID12_17740 ID12_17745 PF09580 ID12_17745 ID12_17750 PF01476 LysM domain ID12_17755 PF02445 Quinolinate synthetase A protein ID12_17760 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ID12_17760 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ID12_17765 PF00890 FAD binding domain ID12_17765 PF02910 Fumarate reductase flavoprotein C-term ID12_17770 PF00266 Aminotransferase class-V ID12_17775 PF02829 3H domain ID12_17775 PF08279 HTH domain ID12_17780 PF00800 Prephenate dehydratase ID12_17780 PF01842 ACT domain ID12_17785 PF01842 ACT domain ID12_17790 PF01018 GTP1/OBG ID12_17790 PF01926 50S ribosome-binding GTPase ID12_17790 PF09269 Domain of unknown function (DUF1967) ID12_17795 PF14682 Sporulation initiation phospho-transferase B, C-terminal ID12_17795 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain ID12_17800 PF01016 Ribosomal L27 protein ID12_17805 PF04327 Protein of unknown function (DUF464) ID12_17810 PF00829 Ribosomal prokaryotic L21 protein ID12_17815 PF02163 Peptidase family M50 ID12_17820 PF01551 Peptidase family M23 ID12_17825 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ID12_17830 PF03775 Septum formation inhibitor MinC, C-terminal domain ID12_17835 PF04093 ID12_17835 ID12_17840 PF04085 rod shape-determining protein MreC ID12_17845 PF06723 MreB/Mbl protein ID12_17850 PF04002 RadC-like JAB domain ID12_17855 PF02545 Maf-like protein ID12_17860 PF05036 Sporulation related domain ID12_17865 PF01478 Type IV leader peptidase family ID12_17865 PF06750 ID12_17865 ID12_17870 PF02875 Mur ligase family, glutamate ligase domain ID12_17870 PF08245 Mur ligase middle domain ID12_17875 PF00133 tRNA synthetases class I (I, L, M and V) ID12_17875 PF08264 Anticodon-binding domain of tRNA ID12_17875 PF10458 Valyl tRNA synthetase tRNA binding arm ID12_17890 PF01476 LysM domain ID12_17895 PF00202 Aminotransferase class-III ID12_17900 PF00490 Delta-aminolevulinic acid dehydratase ID12_17905 PF02602 Uroporphyrinogen-III synthase HemD ID12_17910 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ID12_17910 PF03900 Porphobilinogen deaminase, C-terminal domain ID12_17915 PF01578 ID12_17915 ID12_17920 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ID12_17920 PF01488 Shikimate / quinate 5-dehydrogenase ID12_17920 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ID12_17930 PF01926 50S ribosome-binding GTPase ID12_17935 PF00004 ATPase family associated with various cellular activities (AAA) ID12_17935 PF02190 ATP-dependent protease La (LON) domain ID12_17935 PF05362 Lon protease (S16) C-terminal proteolytic domain ID12_17940 PF00004 ATPase family associated with various cellular activities (AAA) ID12_17940 PF05362 Lon protease (S16) C-terminal proteolytic domain ID12_17945 PF06689 ClpX C4-type zinc finger ID12_17945 PF07724 AAA domain (Cdc48 subfamily) ID12_17945 PF10431 C-terminal, D2-small domain, of ClpB protein ID12_17950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ID12_17950 PF05697 Bacterial trigger factor protein (TF) ID12_17950 PF05698 Bacterial trigger factor protein (TF) C-terminus ID12_17955 PF14559 Tetratricopeptide repeat ID12_17960 PF00694 Aconitase C-terminal domain ID12_17965 PF00330 Aconitase family (aconitate hydratase) ID12_17970 PF00180 Isocitrate/isopropylmalate dehydrogenase ID12_17975 PF00682 HMGL-like ID12_17975 PF08502 LeuA allosteric (dimerisation) domain ID12_17980 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ID12_17980 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain ID12_17985 PF01842 ACT domain ID12_17985 PF10369 Small subunit of acetolactate synthase ID12_17990 PF00205 Thiamine pyrophosphate enzyme, central domain ID12_17990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ID12_17990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ID12_17995 PF01063 Aminotransferase class IV ID12_18005 PF10282 Lactonase, 7-bladed beta-propeller ID12_18010 PF06803 ID12_18010 ID12_18015 PF04914 DltD C-terminal region ID12_18020 PF00550 Phosphopantetheine attachment site ID12_18025 PF03062 ID12_18025 ID12_18030 PF00501 AMP-binding enzyme ID12_18030 PF13193 AMP-binding enzyme C-terminal domain ID12_18035 PF12459 ID12_18035 ID12_18040 PF01344 Kelch motif ID12_18045 PF14025 ID12_18045 ID12_18055 PF12686 ID12_18055 ID12_18080 PF12850 Calcineurin-like phosphoesterase superfamily domain ID12_18085 PF01725 Ham1 family ID12_18090 PF01138 3' exoribonuclease family, domain 1 ID12_18090 PF03725 3' exoribonuclease family, domain 2 ID12_18095 PF10646 ID12_18095 ID12_18100 PF01177 Asp/Glu/Hydantoin racemase ID12_18105 PF01047 MarR family ID12_18110 PF00196 Bacterial regulatory proteins, luxR family ID12_18115 PF03600 Citrate transporter ID12_18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ID12_18120 PF03466 LysR substrate binding domain ID12_18125 PF04303 PrpF protein ID12_18130 PF03099 Biotin/lipoate A/B protein ligase family ID12_18135 PF03061 Thioesterase superfamily ID12_18140 PF13085 2Fe-2S iron-sulfur cluster binding domain ID12_18140 PF13183 4Fe-4S dicluster domain ID12_18145 PF00890 FAD binding domain ID12_18145 PF02910 Fumarate reductase flavoprotein C-term ID12_18150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ID12_18155 PF10702 Protein of unknown function (DUF2507) ID12_18160 PF00696 Amino acid kinase family ID12_18160 PF13840 ACT domain ID12_18165 PF01541 GIY-YIG catalytic domain ID12_18165 PF02151 UvrB/uvrC motif ID12_18165 PF08459 UvrC Helix-hairpin-helix N-terminal ID12_18165 PF14520 Helix-hairpin-helix domain ID12_18170 PF00085 Thioredoxin ID12_18175 PF06964 Alpha-L-arabinofuranosidase C-terminus ID12_18180 PF00766 Electron transfer flavoprotein FAD-binding domain ID12_18180 PF01012 Electron transfer flavoprotein domain ID12_18185 PF01012 Electron transfer flavoprotein domain ID12_18190 PF00378 Enoyl-CoA hydratase/isomerase family ID12_18195 PF00440 Bacterial regulatory proteins, tetR family ID12_18195 PF08359 YsiA-like protein, C-terminal region ID12_18200 PF00501 AMP-binding enzyme ID12_18200 PF13193 AMP-binding enzyme C-terminal domain ID12_18205 PF15599 ID12_18205 ID12_18210 PF03994 ID12_18210 ID12_18215 PF00488 MutS domain V ID12_18215 PF01713 Smr domain ID12_18220 PF02811 PHP domain ID12_18220 PF14520 Helix-hairpin-helix domain ID12_18220 PF14716 Helix-hairpin-helix domain ID12_18220 PF14791 DNA polymerase beta thumb ID12_18225 PF02674 ID12_18225 ID12_18230 PF05164 Cell division protein ZapA ID12_18235 PF01351 Ribonuclease HII ID12_18235 PF11858 Domain of unknown function (DUF3378) ID12_18240 PF01588 Putative tRNA binding domain ID12_18240 PF03147 Ferredoxin-fold anticodon binding domain ID12_18240 PF03483 B3/4 domain ID12_18240 PF03484 tRNA synthetase B5 domain ID12_18245 PF01409 tRNA synthetases class II core domain (F) ID12_18245 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ID12_18250 PF00588 SpoU rRNA Methylase family ID12_18250 PF08032 RNA 2'-O ribose methyltransferase substrate binding ID12_18255 PF14098 ID12_18255 ID12_18260 PF02554 ID12_18260 ID12_18260 PF13722 ID12_18260 ID12_18265 PF05343 M42 glutamyl aminopeptidase ID12_18275 PF06961 ID12_18275 ID12_18280 PF00453 Ribosomal protein L20 ID12_18285 PF01632 Ribosomal protein L35 ID12_18290 PF00707 Translation initiation factor IF-3, C-terminal domain ID12_18290 PF05198 Translation initiation factor IF-3, N-terminal domain ID12_18300 PF11611 Domain of unknown function (DUF4352) ID12_18305 PF13419 Haloacid dehalogenase-like hydrolase ID12_18310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ID12_18310 PF13426 PAS domain ID12_18315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ID12_18315 PF02824 TGS domain ID12_18315 PF03129 Anticodon binding domain ID12_18315 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ID12_18320 PF08812 ID12_18320 ID12_18325 PF09335 ID12_18325 ID12_18330 PF01695 IstB-like ATP binding protein ID12_18330 PF07319 Primosomal protein DnaI N-terminus ID12_18335 PF07261 Replication initiation and membrane attachment ID12_18340 PF03477 ATP cone domain ID12_18350 PF02675 S-adenosylmethionine decarboxylase ID12_18355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ID12_18355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ID12_18360 PF01121 Dephospho-CoA kinase ID12_18365 PF02659 ID12_18365 ID12_18370 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ID12_18370 PF06827 Zinc finger found in FPG and IleRS ID12_18370 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ID12_18375 PF00476 DNA polymerase family A ID12_18375 PF01367 5'-3' exonuclease, C-terminal SAM fold ID12_18375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ID12_18380 PF00512 His Kinase A (phospho-acceptor) domain ID12_18380 PF00989 PAS fold ID12_18380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_18380 PF16736 ID12_18380 ID12_18385 PF00072 Response regulator receiver domain ID12_18385 PF00486 Transcriptional regulatory protein, C terminal ID12_18390 PF00056 lactate/malate dehydrogenase, NAD binding domain ID12_18390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ID12_18395 PF00180 Isocitrate/isopropylmalate dehydrogenase ID12_18400 PF00285 Citrate synthase ID12_18405 PF04284 ID12_18405 ID12_18410 PF01594 ID12_18410 ID12_18415 PF04186 ID12_18415 ID12_18420 PF00224 Pyruvate kinase, barrel domain ID12_18420 PF00391 PEP-utilising enzyme, mobile domain ID12_18420 PF02887 Pyruvate kinase, alpha/beta domain ID12_18425 PF00365 Phosphofructokinase ID12_18430 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ID12_18435 PF01039 Carboxyl transferase domain ID12_18440 PF00390 Malic enzyme, N-terminal domain ID12_18440 PF03949 Malic enzyme, NAD binding domain ID12_18445 PF01336 OB-fold nucleic acid binding domain ID12_18445 PF02811 PHP domain ID12_18445 PF07733 Bacterial DNA polymerase III alpha subunit ID12_18445 PF14579 Helix-hairpin-helix motif ID12_18450 PF14034 ID12_18450 ID12_18465 PF01368 DHH family ID12_18465 PF02272 DHHA1 domain ID12_18470 PF14007 ID12_18470 ID12_18480 PF00392 Bacterial regulatory proteins, gntR family ID12_18480 PF00571 CBS domain ID12_18480 PF03061 Thioesterase superfamily ID12_18480 PF07085 DRTGG domain ID12_18485 PF13483 Beta-lactamase superfamily domain ID12_18490 PF13561 Enoyl-(Acyl carrier protein) reductase ID12_18495 PF01636 Phosphotransferase enzyme family ID12_18500 PF00206 Lyase ID12_18500 PF14698 Argininosuccinate lyase C-terminal ID12_18505 PF00764 Arginosuccinate synthase ID12_18510 PF00994 Probable molybdopterin binding domain ID12_18515 PF00871 Acetokinase family ID12_18520 PF02384 N-6 DNA Methylase ID12_18525 PF08534 Redoxin ID12_18530 PF09579 ID12_18530 ID12_18535 PF11167 ID12_18535 ID12_18540 PF06271 ID12_18540 ID12_18545 PF01343 Peptidase family S49 ID12_18550 PF01513 ATP-NAD kinase ID12_18555 PF00270 DEAD/DEAH box helicase ID12_18555 PF00271 Helicase conserved C-terminal domain ID12_18555 PF03880 DbpA RNA binding domain ID12_18560 PF00487 ID12_18560 ID12_18570 PF07730 Histidine kinase ID12_18575 PF00072 Response regulator receiver domain ID12_18575 PF00196 Bacterial regulatory proteins, luxR family ID12_18580 PF01497 Periplasmic binding protein ID12_18585 PF00072 Response regulator receiver domain ID12_18585 PF00486 Transcriptional regulatory protein, C terminal ID12_18590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ID12_18595 PF01098 ID12_18595 ID12_18600 PF03551 Transcriptional regulator PadR-like family ID12_18605 PF00005 ABC transporter ID12_18615 PF01979 Amidohydrolase family ID12_18620 PF02525 Flavodoxin-like fold ID12_18625 PF01047 MarR family ID12_18640 PF01810 ID12_18640 ID12_18645 PF00501 AMP-binding enzyme ID12_18645 PF13193 AMP-binding enzyme C-terminal domain ID12_18650 PF00269 Small, acid-soluble spore proteins, alpha/beta type ID12_18655 PF02568 Thiamine biosynthesis protein (ThiI) ID12_18655 PF02926 THUMP domain ID12_18660 PF00266 Aminotransferase class-V ID12_18665 PF05525 ID12_18665 ID12_18670 PF05525 ID12_18670 ID12_18675 PF06160 ID12_18675 ID12_18680 PF02811 PHP domain ID12_18680 PF13263 PHP-associated ID12_18685 PF00440 Bacterial regulatory proteins, tetR family ID12_18690 PF13185 GAF domain ID12_18700 PF00163 Ribosomal protein S4/S9 N-terminal domain ID12_18700 PF01479 S4 domain ID12_18710 PF00857 Isochorismatase family ID12_18720 PF01674 Lipase (class 2) ID12_18725 PF03992 Antibiotic biosynthesis monooxygenase ID12_18730 PF00579 tRNA synthetases class I (W and Y) ID12_18730 PF01479 S4 domain ID12_18735 PF00501 AMP-binding enzyme ID12_18735 PF13193 AMP-binding enzyme C-terminal domain ID12_18740 PF00583 Acetyltransferase (GNAT) family ID12_18745 PF00571 CBS domain ID12_18750 PF00850 Histone deacetylase domain ID12_18755 PF00356 Bacterial regulatory proteins, lacI family ID12_18755 PF13377 Periplasmic binding protein-like domain ID12_18760 PF00793 DAHP synthetase I family ID12_18760 PF01817 Chorismate mutase type II ID12_18765 PF11009 Protein of unknown function (DUF2847) ID12_18770 PF12732 ID12_18770 ID12_18775 PF06103 ID12_18775 ID12_18780 PF01225 Mur ligase family, catalytic domain ID12_18780 PF02875 Mur ligase family, glutamate ligase domain ID12_18780 PF08245 Mur ligase middle domain ID12_18785 PF01580 FtsK/SpoIIIE family ID12_18785 PF09397 Ftsk gamma domain ID12_18790 PF01588 Putative tRNA binding domain ID12_18790 PF14794 Domain of unknown function (DUF4479) ID12_18795 PF07285 ID12_18795 ID12_18800 PF00085 Thioredoxin ID12_18805 PF13303 ID12_18805 ID12_18810 PF11071 ID12_18810 ID12_18815 PF05343 M42 glutamyl aminopeptidase ID12_18820 PF03413 Peptidase propeptide and YPEB domain ID12_18825 PF00390 Malic enzyme, N-terminal domain ID12_18825 PF03949 Malic enzyme, NAD binding domain ID12_18830 PF00753 Metallo-beta-lactamase superfamily ID12_18835 PF02390 Putative methyltransferase ID12_18840 PF14165 ID12_18840 ID12_18845 PF01636 Phosphotransferase enzyme family ID12_18850 PF00781 Diacylglycerol kinase catalytic domain ID12_18860 PF13563 2'-5' RNA ligase superfamily ID12_18865 PF00291 Pyridoxal-phosphate dependent enzyme ID12_18870 PF03575 Peptidase family S51 ID12_18875 PF01546 Peptidase family M20/M25/M40 ID12_18880 PF00860 Permease family ID12_18885 PF08220 DeoR-like helix-turn-helix domain ID12_18890 PF00849 RNA pseudouridylate synthase ID12_18890 PF01479 S4 domain ID12_18895 PF01943 ID12_18895 ID12_18895 PF14667 Polysaccharide biosynthesis C-terminal domain ID12_18900 PF03486 HI0933-like protein ID12_18910 PF02028 BCCT family transporter ID12_18915 PF03691 ID12_18915 ID12_18920 PF10957 ID12_18920 ID12_18925 PF00581 Rhodanese-like domain ID12_18930 PF04854 ID12_18930 ID12_18935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ID12_18935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ID12_18945 PF07470 Glycosyl Hydrolase Family 88 ID12_18950 PF00528 Binding-protein-dependent transport system inner membrane component ID12_18955 PF02743 Cache domain ID12_18955 PF12833 Helix-turn-helix domain ID12_18960 PF01638 HxlR-like helix-turn-helix ID12_18965 PF07690 Major Facilitator Superfamily ID12_18970 PF00248 Aldo/keto reductase family ID12_18975 PF01547 Bacterial extracellular solute-binding protein ID12_18980 PF00528 Binding-protein-dependent transport system inner membrane component ID12_18990 PF01370 NAD dependent epimerase/dehydratase family ID12_18995 PF01738 Dienelactone hydrolase family ID12_19000 PF00133 tRNA synthetases class I (I, L, M and V) ID12_19000 PF08264 Anticodon-binding domain of tRNA ID12_19000 PF09334 tRNA synthetases class I (M) ID12_19000 PF13603 Leucyl-tRNA synthetase, Domain 2 ID12_19005 PF14074 ID12_19005 ID12_19015 PF01740 STAS domain ID12_19015 PF13426 PAS domain ID12_19025 PF02687 ID12_19025 ID12_19025 PF12704 MacB-like periplasmic core domain ID12_19030 PF00005 ABC transporter ID12_19040 PF00005 ABC transporter ID12_19045 PF00392 Bacterial regulatory proteins, gntR family ID12_19055 PF10732 ID12_19055 ID12_19060 PF04055 Radical SAM superfamily ID12_19060 PF16199 ID12_19060 ID12_19065 PF06962 Putative rRNA methylase ID12_19070 PF07070 ID12_19070 ID12_19075 PF10776 ID12_19075 ID12_19080 PF12146 Putative lysophospholipase ID12_19085 PF00132 Bacterial transferase hexapeptide (six repeats) ID12_19090 PF00733 Asparagine synthase ID12_19090 PF13537 Glutamine amidotransferase domain ID12_19095 PF00438 S-adenosylmethionine synthetase, N-terminal domain ID12_19095 PF02772 S-adenosylmethionine synthetase, central domain ID12_19095 PF02773 S-adenosylmethionine synthetase, C-terminal domain ID12_19100 PF01293 Phosphoenolpyruvate carboxykinase ID12_19105 PF10763 Protein of unknown function (DUF2584) ID12_19110 PF00326 Prolyl oligopeptidase family ID12_19115 PF01593 Flavin containing amine oxidoreductase ID12_19120 PF13641 Glycosyltransferase like family 2 ID12_19125 PF01553 Acyltransferase ID12_19130 PF04240 ID12_19130 ID12_19135 PF09084 NMT1/THI5 like ID12_19140 PF00005 ABC transporter ID12_19145 PF00528 Binding-protein-dependent transport system inner membrane component ID12_19150 PF00293 NUDIX domain ID12_19155 PF02342 TerD domain ID12_19160 PF01987 Mitochondrial biogenesis AIM24 ID12_19170 PF05105 ID12_19170 ID12_19180 PF00210 Ferritin-like domain ID12_19190 PF13115 ID12_19190 ID12_19195 PF02664 S-Ribosylhomocysteinase (LuxS) ID12_19200 PF01809 ID12_19200 ID12_19205 PF00484 Carbonic anhydrase ID12_19210 PF01297 Periplasmic solute binding protein family ID12_19215 PF01197 Ribosomal protein L31 ID12_19220 PF01654 ID12_19220 ID12_19225 PF02322 ID12_19225 ID12_19240 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ID12_19240 PF13378 Enolase C-terminal domain-like ID12_19245 PF00501 AMP-binding enzyme ID12_19245 PF13193 AMP-binding enzyme C-terminal domain ID12_19250 PF00378 Enoyl-CoA hydratase/isomerase family ID12_19255 PF00561 alpha/beta hydrolase fold ID12_19260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ID12_19260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ID12_19260 PF16582 ID12_19260 ID12_19265 PF00425 chorismate binding enzyme ID12_19270 PF01040 UbiA prenyltransferase family ID12_19275 PF01258 Prokaryotic dksA/traR C4-type zinc finger ID12_19280 PF03073 TspO/MBR family ID12_19415 PF01446 ID12_19415 ID12_19425 PF13424 Tetratricopeptide repeat ID12_19440 PF08279 HTH domain ID12_19440 PF13152 ID12_19440