ID12_00020 SM00530 Helix-turn-helix XRE-family like proteins ID12_00035 SM00244 prohibitin homologues ID12_00075 SM00644 ID12_00075 ID12_00155 SM00257 Lysin motif ID12_00240 SM00421 helix_turn_helix, Lux Regulon ID12_00270 SM00530 Helix-turn-helix XRE-family like proteins ID12_00275 SM00530 Helix-turn-helix XRE-family like proteins ID12_00290 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_00290 SM00876 Biotin and Thiamin Synthesis associated domain ID12_00325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_00325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_00325 SM00319 Homologues of the ligand binding domain of Tar ID12_00330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_00330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_00335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_00335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_00335 SM00319 Homologues of the ligand binding domain of Tar ID12_00340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_00340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_00340 SM00319 Homologues of the ligand binding domain of Tar ID12_00365 SM01091 Transporter associated domain ID12_00415 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_00425 SM00344 helix_turn_helix ASNC type ID12_00445 SM00387 Histidine kinase-like ATPases ID12_00445 SM00388 His Kinase A (phosphoacceptor) domain ID12_00455 SM01298 ID12_00455 ID12_00460 SM00479 ID12_00460 ID12_00485 SM00387 Histidine kinase-like ATPases ID12_00490 SM00448 cheY-homologous receiver domain ID12_00500 SM00382 ATPases associated with a variety of cellular activities ID12_00570 SM00421 helix_turn_helix, Lux Regulon ID12_00570 SM00448 cheY-homologous receiver domain ID12_00575 SM00387 Histidine kinase-like ATPases ID12_00600 SM00052 Putative diguanylate phosphodiesterase ID12_00650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_00695 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ID12_00695 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ID12_00845 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_00890 SM00835 Cupin ID12_00950 SM00388 His Kinase A (phosphoacceptor) domain ID12_00955 SM00448 cheY-homologous receiver domain ID12_00955 SM00862 Transcriptional regulatory protein, C terminal ID12_00990 SM00487 DEAD-like helicases superfamily ID12_01020 SM00382 ATPases associated with a variety of cellular activities ID12_01045 SM00382 ATPases associated with a variety of cellular activities ID12_01045 SM00930 ID12_01045 ID12_01060 SM00493 ID12_01060 ID12_01115 SM00382 ATPases associated with a variety of cellular activities ID12_01130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_01135 SM00448 cheY-homologous receiver domain ID12_01135 SM00862 Transcriptional regulatory protein, C terminal ID12_01140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_01140 SM00387 Histidine kinase-like ATPases ID12_01140 SM00388 His Kinase A (phosphoacceptor) domain ID12_01185 SM00421 helix_turn_helix, Lux Regulon ID12_01185 SM00448 cheY-homologous receiver domain ID12_01190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_01190 SM00387 Histidine kinase-like ATPases ID12_01255 SM01130 ID12_01255 ID12_01260 SM00382 ATPases associated with a variety of cellular activities ID12_01275 SM00710 Parallel beta-helix repeats ID12_01280 SM00858 ID12_01280 ID12_01290 SM00354 helix_turn _helix lactose operon repressor ID12_01300 SM00387 Histidine kinase-like ATPases ID12_01300 SM00388 His Kinase A (phosphoacceptor) domain ID12_01305 SM00448 cheY-homologous receiver domain ID12_01305 SM00862 Transcriptional regulatory protein, C terminal ID12_01310 SM00382 ATPases associated with a variety of cellular activities ID12_01340 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_01400 SM00382 ATPases associated with a variety of cellular activities ID12_01425 SM00448 cheY-homologous receiver domain ID12_01430 SM00387 Histidine kinase-like ATPases ID12_01470 SM00267 diguanylate cyclase ID12_01500 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_01500 SM00357 Cold shock protein domain ID12_01500 SM00955 ID12_01500 ID12_01515 SM00966 SpoVT / AbrB like domain ID12_01520 SM00530 Helix-turn-helix XRE-family like proteins ID12_01525 SM00530 Helix-turn-helix XRE-family like proteins ID12_01530 SM00530 Helix-turn-helix XRE-family like proteins ID12_01555 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_01555 SM00382 ATPases associated with a variety of cellular activities ID12_01595 SM00382 ATPases associated with a variety of cellular activities ID12_01605 SM01192 ID12_01605 ID12_01605 SM01193 ID12_01605 ID12_01625 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ID12_01645 SM00382 ATPases associated with a variety of cellular activities ID12_01650 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_01650 SM00895 ID12_01650 ID12_01675 SM00382 ATPases associated with a variety of cellular activities ID12_01680 SM00382 ATPases associated with a variety of cellular activities ID12_01765 SM00530 Helix-turn-helix XRE-family like proteins ID12_01795 SM00382 ATPases associated with a variety of cellular activities ID12_01800 SM00382 ATPases associated with a variety of cellular activities ID12_01805 SM00382 ATPases associated with a variety of cellular activities ID12_01885 SM00947 Carbonic anhydrase ID12_01945 SM00028 Tetratricopeptide repeats ID12_02050 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_02050 SM00866 ID12_02050 ID12_02085 SM00382 ATPases associated with a variety of cellular activities ID12_02090 SM00487 DEAD-like helicases superfamily ID12_02090 SM00490 helicase superfamily c-terminal domain ID12_02120 SM00448 cheY-homologous receiver domain ID12_02120 SM00862 Transcriptional regulatory protein, C terminal ID12_02125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_02125 SM00387 Histidine kinase-like ATPases ID12_02125 SM00388 His Kinase A (phosphoacceptor) domain ID12_02155 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_02165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_02165 SM00245 tail specific protease ID12_02185 SM00382 ATPases associated with a variety of cellular activities ID12_02210 SM00937 ID12_02210 ID12_02215 SM00957 SecA DEAD-like domain ID12_02215 SM00958 SecA preprotein cross-linking domain ID12_02225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_02225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_02305 SM00487 DEAD-like helicases superfamily ID12_02305 SM00490 helicase superfamily c-terminal domain ID12_02315 SM00421 helix_turn_helix, Lux Regulon ID12_02315 SM00448 cheY-homologous receiver domain ID12_02320 SM00387 Histidine kinase-like ATPases ID12_02365 SM00984 UDP binding domain ID12_02390 SM00646 ID12_02390 ID12_02395 SM00646 ID12_02395 ID12_02425 SM00382 ATPases associated with a variety of cellular activities ID12_02465 SM00047 Lysozyme subfamily 2 ID12_02465 SM00287 Bacterial SH3 domain homologues ID12_02490 SM00342 helix_turn_helix, arabinose operon control protein ID12_02490 SM00448 cheY-homologous receiver domain ID12_02495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_02495 SM00387 Histidine kinase-like ATPases ID12_02520 SM00354 helix_turn _helix lactose operon repressor ID12_02585 SM00854 Bacterial capsule synthesis protein PGA_cap ID12_02615 SM00354 helix_turn _helix lactose operon repressor ID12_02630 SM00382 ATPases associated with a variety of cellular activities ID12_02645 SM00903 Flavin reductase like domain ID12_02665 SM00344 helix_turn_helix ASNC type ID12_02680 SM00984 UDP binding domain ID12_02695 SM00487 DEAD-like helicases superfamily ID12_02695 SM00490 helicase superfamily c-terminal domain ID12_02700 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ID12_02700 SM00091 PAS domain ID12_02730 SM00028 Tetratricopeptide repeats ID12_02760 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_02770 SM00014 Acid phosphatase homologues ID12_02780 SM00062 Bacterial periplasmic substrate-binding proteins ID12_02780 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ID12_02790 SM00382 ATPases associated with a variety of cellular activities ID12_02800 SM00938 Nitrogen regulatory protein P-II ID12_02825 SM00382 ATPases associated with a variety of cellular activities ID12_02850 SM00833 Cobalamin synthesis protein cobW C-terminal domain ID12_02860 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_02880 SM00327 von Willebrand factor (vWF) type A domain ID12_02885 SM00327 von Willebrand factor (vWF) type A domain ID12_02920 SM00382 ATPases associated with a variety of cellular activities ID12_02985 SM00226 Low molecular weight phosphatase family ID12_03020 SM00937 ID12_03020 ID12_03035 SM00919 Malic enzyme, NAD binding domain ID12_03035 SM01274 ID12_03035 ID12_03050 SM00357 Cold shock protein domain ID12_03050 SM00382 ATPases associated with a variety of cellular activities ID12_03050 SM00959 Rho termination factor, N-terminal domain ID12_03075 SM00448 cheY-homologous receiver domain ID12_03130 SM00155 Phospholipase D. Active site motifs. ID12_03155 SM00382 ATPases associated with a variety of cellular activities ID12_03160 SM00155 Phospholipase D. Active site motifs. ID12_03175 SM00836 DALR anticodon binding domain ID12_03175 SM01016 Arginyl tRNA synthetase N terminal dom ID12_03260 SM00062 Bacterial periplasmic substrate-binding proteins ID12_03270 SM00382 ATPases associated with a variety of cellular activities ID12_03280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_03305 SM00028 Tetratricopeptide repeats ID12_03400 SM00344 helix_turn_helix ASNC type ID12_03470 SM00858 ID12_03470 ID12_03505 SM00835 Cupin ID12_03530 SM00986 Uracil DNA glycosylase superfamily ID12_03530 SM00987 UreE urease accessory protein, C-terminal domain ID12_03560 SM00640 Glycosyl hydrolases family 32 ID12_03570 SM01061 CAT RNA binding domain ID12_03650 SM00342 helix_turn_helix, arabinose operon control protein ID12_03735 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ID12_03745 SM00382 ATPases associated with a variety of cellular activities ID12_03755 SM00062 Bacterial periplasmic substrate-binding proteins ID12_03755 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ID12_03775 SM00954 Region found in RelA / SpoT proteins ID12_03785 SM00382 ATPases associated with a variety of cellular activities ID12_03795 SM00710 Parallel beta-helix repeats ID12_03855 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ID12_03875 SM00656 ID12_03875 ID12_03880 SM00382 ATPases associated with a variety of cellular activities ID12_03885 SM00382 ATPases associated with a variety of cellular activities ID12_03900 SM00382 ATPases associated with a variety of cellular activities ID12_03920 SM00382 ATPases associated with a variety of cellular activities ID12_03935 SM00725 NEAr Transporter domain ID12_03940 SM00725 NEAr Transporter domain ID12_03945 SM00725 NEAr Transporter domain ID12_04055 SM00870 ID12_04055 ID12_04060 SM00530 Helix-turn-helix XRE-family like proteins ID12_04065 SM00530 Helix-turn-helix XRE-family like proteins ID12_04135 SM00382 ATPases associated with a variety of cellular activities ID12_04150 SM01061 CAT RNA binding domain ID12_04160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_04170 SM00382 ATPases associated with a variety of cellular activities ID12_04225 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_04225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ID12_04235 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain ID12_04245 SM01133 ID12_04245 ID12_04280 SM00421 helix_turn_helix, Lux Regulon ID12_04290 SM00422 helix_turn_helix, mercury resistance ID12_04300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ID12_04300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_04375 SM00354 helix_turn _helix lactose operon repressor ID12_04420 SM00382 ATPases associated with a variety of cellular activities ID12_04460 SM00382 ATPases associated with a variety of cellular activities ID12_04470 SM00028 Tetratricopeptide repeats ID12_04475 SM01061 CAT RNA binding domain ID12_04515 SM00530 Helix-turn-helix XRE-family like proteins ID12_04530 SM00354 helix_turn _helix lactose operon repressor ID12_04595 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_04595 SM00866 ID12_04595 ID12_04650 SM00849 Metallo-beta-lactamase superfamily ID12_04690 SM00382 ATPases associated with a variety of cellular activities ID12_04710 SM00382 ATPases associated with a variety of cellular activities ID12_04720 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_04725 SM00849 Metallo-beta-lactamase superfamily ID12_04740 SM00091 PAS domain ID12_04740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_04740 SM00387 Histidine kinase-like ATPases ID12_04740 SM00388 His Kinase A (phosphoacceptor) domain ID12_04745 SM00448 cheY-homologous receiver domain ID12_04745 SM00862 Transcriptional regulatory protein, C terminal ID12_04785 SM00788 Adenylosuccinate synthetase ID12_04805 SM00382 ATPases associated with a variety of cellular activities ID12_04830 SM00342 helix_turn_helix, arabinose operon control protein ID12_04860 SM00267 diguanylate cyclase ID12_04870 SM01131 ID12_04870 ID12_04890 SM01060 ID12_04890 ID12_04915 SM00382 ATPases associated with a variety of cellular activities ID12_04965 SM00470 ParB-like nuclease domain ID12_04980 SM00470 ParB-like nuclease domain ID12_04990 SM01228 ID12_04990 ID12_05000 SM00393 Putative single-stranded nucleic acids-binding domain ID12_05000 SM01245 ID12_05000 ID12_05020 SM00382 ATPases associated with a variety of cellular activities ID12_05020 SM00760 Bacterial dnaA protein helix-turn-helix domain ID12_05025 SM00480 DNA polymerase III beta subunit ID12_05045 SM00387 Histidine kinase-like ATPases ID12_05045 SM00433 TopoisomeraseII ID12_05050 SM00434 DNA Topoisomerase IV ID12_05090 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_05090 SM01240 ID12_05090 ID12_05095 SM00936 Penicillin-binding protein 5, C-terminal domain ID12_05100 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_05120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_05140 SM00257 Lysin motif ID12_05140 SM00636 ID12_05140 ID12_05155 SM00382 ATPases associated with a variety of cellular activities ID12_05165 SM00493 ID12_05165 ID12_05260 SM00465 GIY-YIG type nucleases (URI domain) ID12_05270 SM00966 SpoVT / AbrB like domain ID12_05285 SM01208 ID12_05285 ID12_05290 SM00493 ID12_05290 ID12_05295 SM00650 Ribosomal RNA adenine dimethylases ID12_05340 SM01400 ID12_05340 ID12_05360 SM00487 DEAD-like helicases superfamily ID12_05360 SM00490 helicase superfamily c-terminal domain ID12_05360 SM00982 ID12_05360 ID12_05360 SM01058 CarD-like/TRCF domain ID12_05365 SM00966 SpoVT / AbrB like domain ID12_05380 SM00363 S4 RNA-binding domain ID12_05400 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_05420 SM00331 Sigma factor PP2C-like phosphatases ID12_05420 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ID12_05430 SM00220 Serine/Threonine protein kinases, catalytic domain ID12_05435 SM00977 TilS substrate C-terminal domain ID12_05445 SM00382 ATPases associated with a variety of cellular activities ID12_05490 SM00905 Dihydroneopterin aldolase ID12_05500 SM00530 Helix-turn-helix XRE-family like proteins ID12_05605 SM00382 ATPases associated with a variety of cellular activities ID12_05605 SM01086 C-terminal, D2-small domain, of ClpB protein ID12_05610 SM00382 ATPases associated with a variety of cellular activities ID12_05620 SM00670 Large family of predicted nucleotide-binding domains ID12_05645 SM00840 ID12_05645 ID12_05650 SM00535 Ribonuclease III family ID12_05655 SM00967 RNA 2'-O ribose methyltransferase substrate binding ID12_05675 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ID12_05675 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ID12_05680 SM00649 Ribosomal protein L11/L12 ID12_05710 SM00663 RNA polymerase I subunit A N-terminus ID12_05730 SM00838 Elongation factor G C-terminus ID12_05730 SM00889 Elongation factor G, domain IV ID12_05745 SM01403 ID12_05745 ID12_05765 SM01382 ID12_05765 ID12_05765 SM01383 ID12_05765 ID12_05780 SM00322 K homology RNA-binding domain ID12_05800 SM01374 ID12_05800 ID12_05805 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ID12_05865 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_05885 SM00662 RNA polymerases D ID12_05895 SM00382 ATPases associated with a variety of cellular activities ID12_05900 SM00382 ATPases associated with a variety of cellular activities ID12_05950 SM00646 ID12_05950 ID12_05965 SM01251 ID12_05965 ID12_06115 SM00382 ATPases associated with a variety of cellular activities ID12_06125 SM00382 ATPases associated with a variety of cellular activities ID12_06160 SM00382 ATPases associated with a variety of cellular activities ID12_06215 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_06220 SM00382 ATPases associated with a variety of cellular activities ID12_06230 SM00530 Helix-turn-helix XRE-family like proteins ID12_06245 SM00342 helix_turn_helix, arabinose operon control protein ID12_06295 SM00825 Beta-ketoacyl synthase ID12_06300 SM00530 Helix-turn-helix XRE-family like proteins ID12_06310 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ID12_06335 SM00450 Rhodanese Homology Domain ID12_06340 SM00450 Rhodanese Homology Domain ID12_06345 SM00450 Rhodanese Homology Domain ID12_06345 SM00849 Metallo-beta-lactamase superfamily ID12_06365 SM00946 Prolyl-tRNA synthetase, C-terminal ID12_06385 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_06410 SM00450 Rhodanese Homology Domain ID12_06425 SM01061 CAT RNA binding domain ID12_06460 SM00872 Alpha mannosidase, middle domain ID12_06570 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_06605 SM00387 Histidine kinase-like ATPases ID12_06610 SM00448 cheY-homologous receiver domain ID12_06630 SM00387 Histidine kinase-like ATPases ID12_06635 SM00448 cheY-homologous receiver domain ID12_06635 SM00850 LytTr DNA-binding domain ID12_06640 SM00382 ATPases associated with a variety of cellular activities ID12_06735 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_06735 SM00382 ATPases associated with a variety of cellular activities ID12_06780 SM00354 helix_turn _helix lactose operon repressor ID12_06905 SM00346 helix_turn_helix isocitrate lyase regulation ID12_06970 SM00062 Bacterial periplasmic substrate-binding proteins ID12_06985 SM00344 helix_turn_helix ASNC type ID12_07000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_07000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_07030 SM00382 ATPases associated with a variety of cellular activities ID12_07045 SM00823 Phosphopantetheine attachment site ID12_07050 SM00823 Phosphopantetheine attachment site ID12_07055 SM00823 Phosphopantetheine attachment site ID12_07060 SM00822 ID12_07060 ID12_07060 SM00823 Phosphopantetheine attachment site ID12_07065 SM00822 ID12_07065 ID12_07065 SM00823 Phosphopantetheine attachment site ID12_07070 SM00824 Thioesterase ID12_07085 SM00382 ATPases associated with a variety of cellular activities ID12_07105 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_07115 SM00342 helix_turn_helix, arabinose operon control protein ID12_07115 SM00871 Bacterial transcription activator, effector binding domain ID12_07130 SM00382 ATPases associated with a variety of cellular activities ID12_07140 SM00062 Bacterial periplasmic substrate-binding proteins ID12_07160 SM00710 Parallel beta-helix repeats ID12_07175 SM00062 Bacterial periplasmic substrate-binding proteins ID12_07175 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ID12_07185 SM00382 ATPases associated with a variety of cellular activities ID12_07200 SM00448 cheY-homologous receiver domain ID12_07200 SM00862 Transcriptional regulatory protein, C terminal ID12_07205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_07205 SM00387 Histidine kinase-like ATPases ID12_07205 SM00388 His Kinase A (phosphoacceptor) domain ID12_07210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ID12_07235 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ID12_07250 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_07300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_07300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_07300 SM01049 ID12_07300 ID12_07315 SM00900 ID12_07315 ID12_07340 SM00894 Excalibur calcium-binding domain ID12_07365 SM00796 Allophanate hydrolase subunit 1 ID12_07370 SM00797 Allophanate hydrolase subunit 2 ID12_07375 SM00346 helix_turn_helix isocitrate lyase regulation ID12_07445 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_07445 SM00895 ID12_07445 ID12_07460 SM01329 ID12_07460 ID12_07465 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ID12_07465 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ID12_07465 SM00493 ID12_07465 ID12_07475 SM00267 diguanylate cyclase ID12_07570 SM00091 PAS domain ID12_07570 SM00387 Histidine kinase-like ATPases ID12_07575 SM00448 cheY-homologous receiver domain ID12_07595 SM00382 ATPases associated with a variety of cellular activities ID12_07640 SM00487 DEAD-like helicases superfamily ID12_07640 SM00490 helicase superfamily c-terminal domain ID12_07670 SM01005 Alanine racemase, C-terminal domain ID12_07700 SM00331 Sigma factor PP2C-like phosphatases ID12_07720 SM00331 Sigma factor PP2C-like phosphatases ID12_07720 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ID12_07725 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_07725 SM00732 Likely ribonuclease with RNase H fold. ID12_07735 SM00731 SprT homologues. ID12_07800 SM00357 Cold shock protein domain ID12_07805 SM01058 CarD-like/TRCF domain ID12_07810 SM00829 Enoylreductase ID12_07815 SM00422 helix_turn_helix, mercury resistance ID12_07860 SM00870 ID12_07860 ID12_07870 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_07890 SM00850 LytTr DNA-binding domain ID12_07935 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_07960 SM00530 Helix-turn-helix XRE-family like proteins ID12_08075 SM00382 ATPases associated with a variety of cellular activities ID12_08085 SM00881 CoA binding domain ID12_08115 SM00883 Chaperonin 10 Kd subunit ID12_08125 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_08135 SM00287 Bacterial SH3 domain homologues ID12_08200 SM00460 Transglutaminase/protease-like homologues ID12_08285 SM01001 AIR carboxylase ID12_08295 SM00998 Adenylosuccinate lyase C-terminus ID12_08310 SM01211 ID12_08310 ID12_08335 SM00798 AICARFT/IMPCHase bienzyme ID12_08335 SM00851 MGS-like domain ID12_08340 SM01209 ID12_08340 ID12_08340 SM01210 ID12_08340 ID12_08365 SM00882 Coenzyme A transferase ID12_08370 SM00882 Coenzyme A transferase ID12_08425 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ID12_08425 SM00292 breast cancer carboxy-terminal domain ID12_08425 SM00532 Ligase N family ID12_08465 SM00845 GatB domain ID12_08485 SM00046 Diacylglycerol kinase catalytic domain (presumed) ID12_08495 SM00382 ATPases associated with a variety of cellular activities ID12_08660 SM00382 ATPases associated with a variety of cellular activities ID12_08670 SM00422 helix_turn_helix, mercury resistance ID12_08680 SM00382 ATPases associated with a variety of cellular activities ID12_08685 SM00487 DEAD-like helicases superfamily ID12_08685 SM00490 helicase superfamily c-terminal domain ID12_08690 SM00829 Enoylreductase ID12_08725 SM00320 WD40 repeats ID12_08740 SM00387 Histidine kinase-like ATPases ID12_08745 SM00448 cheY-homologous receiver domain ID12_08765 SM00631 ID12_08765 ID12_08845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_08845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_08860 SM00642 Alpha-amylase domain ID12_08865 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_08865 SM00866 ID12_08865 ID12_08895 SM00226 Low molecular weight phosphatase family ID12_08980 SM00478 endonuclease III ID12_09020 SM00422 helix_turn_helix, mercury resistance ID12_09020 SM00871 Bacterial transcription activator, effector binding domain ID12_09040 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ID12_09135 SM00342 helix_turn_helix, arabinose operon control protein ID12_09145 SM00382 ATPases associated with a variety of cellular activities ID12_09175 SM00829 Enoylreductase ID12_09190 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_09210 SM00530 Helix-turn-helix XRE-family like proteins ID12_09285 SM00835 Cupin ID12_09310 SM00478 endonuclease III ID12_09340 SM00382 ATPases associated with a variety of cellular activities ID12_09345 SM00382 ATPases associated with a variety of cellular activities ID12_09350 SM00382 ATPases associated with a variety of cellular activities ID12_09510 SM00855 Phosphoglycerate mutase family ID12_09555 SM00382 ATPases associated with a variety of cellular activities ID12_09560 SM00062 Bacterial periplasmic substrate-binding proteins ID12_09585 SM00382 ATPases associated with a variety of cellular activities ID12_09620 SM00567 E-Z type HEAT repeats ID12_09650 SM00763 PrkA AAA domain ID12_09680 SM00357 Cold shock protein domain ID12_09685 SM00267 diguanylate cyclase ID12_09715 SM00138 Methyltransferase, chemotaxis proteins ID12_09715 SM00387 Histidine kinase-like ATPases ID12_09715 SM00388 His Kinase A (phosphoacceptor) domain ID12_09720 SM00318 Staphylococcal nuclease homologues ID12_09805 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ID12_09810 SM00421 helix_turn_helix, Lux Regulon ID12_09810 SM00448 cheY-homologous receiver domain ID12_09825 SM01060 ID12_09825 ID12_09845 SM00098 Alkaline phosphatase homologues ID12_09850 SM00257 Lysin motif ID12_09875 SM00563 Phosphate acyltransferases ID12_09880 SM01091 Transporter associated domain ID12_09890 SM01091 Transporter associated domain ID12_09955 SM00382 ATPases associated with a variety of cellular activities ID12_09960 SM00382 ATPases associated with a variety of cellular activities ID12_09990 SM00382 ATPases associated with a variety of cellular activities ID12_10030 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_10075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_10110 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_10145 SM00382 ATPases associated with a variety of cellular activities ID12_10220 SM00849 Metallo-beta-lactamase superfamily ID12_10250 SM00855 Phosphoglycerate mutase family ID12_10255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_10270 SM00914 ID12_10270 ID12_10280 SM01119 ID12_10280 ID12_10290 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_10315 SM00382 ATPases associated with a variety of cellular activities ID12_10490 SM00342 helix_turn_helix, arabinose operon control protein ID12_10525 SM01006 Siderophore biosynthesis protein domain ID12_10550 SM01018 B12 binding domain ID12_10565 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_10575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_10575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_10630 SM00859 Semialdehyde dehydrogenase, NAD binding domain ID12_10650 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ID12_10655 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ID12_10715 SM00825 Beta-ketoacyl synthase ID12_10725 SM00382 ATPases associated with a variety of cellular activities ID12_10730 SM00382 ATPases associated with a variety of cellular activities ID12_10765 SM00320 WD40 repeats ID12_10810 SM00382 ATPases associated with a variety of cellular activities ID12_10815 SM00382 ATPases associated with a variety of cellular activities ID12_10845 SM00155 Phospholipase D. Active site motifs. ID12_10880 SM01118 ID12_10880 ID12_10890 SM00954 Region found in RelA / SpoT proteins ID12_11055 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_11080 SM01059 Chloramphenicol acetyltransferase ID12_11095 SM00860 SMI1 / KNR4 family ID12_11160 SM01005 Alanine racemase, C-terminal domain ID12_11165 SM00829 Enoylreductase ID12_11175 SM00612 ID12_11175 ID12_11195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_11225 SM00257 Lysin motif ID12_11225 SM00644 ID12_11225 ID12_11255 SM01022 ID12_11255 ID12_11305 SM00829 Enoylreductase ID12_11315 SM00861 Transketolase, pyrimidine binding domain ID12_11320 SM01059 Chloramphenicol acetyltransferase ID12_11360 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_11385 SM00382 ATPases associated with a variety of cellular activities ID12_11405 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ID12_11415 SM00382 ATPases associated with a variety of cellular activities ID12_11450 SM00342 helix_turn_helix, arabinose operon control protein ID12_11475 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ID12_11485 SM00028 Tetratricopeptide repeats ID12_11500 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_11530 SM00530 Helix-turn-helix XRE-family like proteins ID12_11535 SM00448 cheY-homologous receiver domain ID12_11535 SM00862 Transcriptional regulatory protein, C terminal ID12_11540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_11540 SM00387 Histidine kinase-like ATPases ID12_11540 SM00388 His Kinase A (phosphoacceptor) domain ID12_11570 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_11570 SM00924 MgtE intracellular N domain ID12_11590 SM00422 helix_turn_helix, mercury resistance ID12_11605 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_11610 SM00052 Putative diguanylate phosphodiesterase ID12_11610 SM00267 diguanylate cyclase ID12_11675 SM00091 PAS domain ID12_11675 SM00387 Histidine kinase-like ATPases ID12_11675 SM00388 His Kinase A (phosphoacceptor) domain ID12_11715 SM01007 Class II Aldolase and Adducin N-terminal domain ID12_11730 SM00387 Histidine kinase-like ATPases ID12_11730 SM00388 His Kinase A (phosphoacceptor) domain ID12_11735 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_11755 SM00382 ATPases associated with a variety of cellular activities ID12_11755 SM01086 C-terminal, D2-small domain, of ClpB protein ID12_11840 SM00354 helix_turn _helix lactose operon repressor ID12_11845 SM01061 CAT RNA binding domain ID12_11875 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_11875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_11900 SM00091 PAS domain ID12_11900 SM00387 Histidine kinase-like ATPases ID12_11900 SM00388 His Kinase A (phosphoacceptor) domain ID12_11930 SM00260 Two component signalling adaptor domain ID12_11930 SM00448 cheY-homologous receiver domain ID12_11960 SM00257 Lysin motif ID12_11975 SM00052 Putative diguanylate phosphodiesterase ID12_12080 SM00852 Probable molybdopterin binding domain ID12_12115 SM00382 ATPases associated with a variety of cellular activities ID12_12125 SM00420 helix_turn_helix, Deoxyribose operon repressor ID12_12125 SM01134 ID12_12125 ID12_12150 SM00382 ATPases associated with a variety of cellular activities ID12_12180 SM00966 SpoVT / AbrB like domain ID12_12185 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ID12_12185 SM00091 PAS domain ID12_12185 SM00387 Histidine kinase-like ATPases ID12_12185 SM00388 His Kinase A (phosphoacceptor) domain ID12_12205 SM00849 Metallo-beta-lactamase superfamily ID12_12240 SM00861 Transketolase, pyrimidine binding domain ID12_12320 SM00838 Elongation factor G C-terminus ID12_12340 SM00670 Large family of predicted nucleotide-binding domains ID12_12365 SM00878 Biotin carboxylase C-terminal domain ID12_12415 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_12470 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_12490 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains ID12_12525 SM00740 ID12_12525 ID12_12530 SM00740 ID12_12530 ID12_12590 SM00842 Cell division protein FtsA ID12_12595 SM00864 Tubulin/FtsZ family, GTPase domain ID12_12595 SM00865 Tubulin/FtsZ family, C-terminal domain ID12_12630 SM00858 ID12_12630 ID12_12655 SM00382 ATPases associated with a variety of cellular activities ID12_12685 SM00363 S4 RNA-binding domain ID12_12710 SM00363 S4 RNA-binding domain ID12_12735 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ID12_12740 SM00851 MGS-like domain ID12_12740 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ID12_12740 SM01209 ID12_12740 ID12_12755 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ID12_12810 SM00831 Cation transporter/ATPase, N-terminus ID12_12825 SM00072 Guanylate kinase homologues. ID12_12830 SM01409 ID12_12830 ID12_12840 SM00487 DEAD-like helicases superfamily ID12_12840 SM00490 helicase superfamily c-terminal domain ID12_12865 SM00331 Sigma factor PP2C-like phosphatases ID12_12865 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain ID12_12870 SM00220 Serine/Threonine protein kinases, catalytic domain ID12_12870 SM00740 ID12_12870 ID12_12885 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain ID12_12905 SM01120 ID12_12905 ID12_12905 SM01121 ID12_12905 ID12_12920 SM00487 DEAD-like helicases superfamily ID12_12920 SM00490 helicase superfamily c-terminal domain ID12_12935 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ID12_12940 SM00822 ID12_12940 ID12_12950 SM00358 Double-stranded RNA binding motif ID12_12950 SM00535 Ribonuclease III family ID12_12955 SM00968 SMC proteins Flexible Hinge Domain ID12_12960 SM00382 ATPases associated with a variety of cellular activities ID12_12960 SM00962 SRP54-type protein, GTPase domain ID12_12960 SM00963 SRP54-type protein, helical bundle domain ID12_12970 SM00382 ATPases associated with a variety of cellular activities ID12_12970 SM00962 SRP54-type protein, GTPase domain ID12_12970 SM00963 SRP54-type protein, helical bundle domain ID12_13030 SM00881 CoA binding domain ID12_13040 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ID12_13040 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ID12_13040 SM00493 ID12_13040 ID12_13060 SM00382 ATPases associated with a variety of cellular activities ID12_13060 SM01086 C-terminal, D2-small domain, of ClpB protein ID12_13100 SM00382 ATPases associated with a variety of cellular activities ID12_13150 SM00448 cheY-homologous receiver domain ID12_13185 SM00962 SRP54-type protein, GTPase domain ID12_13195 SM00448 cheY-homologous receiver domain ID12_13200 SM00073 Histidine Phosphotransfer domain ID12_13200 SM00260 Two component signalling adaptor domain ID12_13200 SM00387 Histidine kinase-like ATPases ID12_13200 SM01231 ID12_13200 ID12_13205 SM00260 Two component signalling adaptor domain ID12_13265 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_13275 SM00479 ID12_13275 ID12_13275 SM00481 DNA polymerase alpha chain like domain ID12_13280 SM01067 Cellulose binding domain ID12_13290 SM00633 Glycosyl hydrolase family 10 ID12_13305 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_13305 SM00322 K homology RNA-binding domain ID12_13340 SM00904 Riboflavin kinase ID12_13345 SM01387 ID12_13345 ID12_13350 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_13350 SM00322 K homology RNA-binding domain ID12_13385 SM00859 Semialdehyde dehydrogenase, NAD binding domain ID12_13395 SM01130 ID12_13395 ID12_13400 SM00849 Metallo-beta-lactamase superfamily ID12_13415 SM00382 ATPases associated with a variety of cellular activities ID12_13415 SM00843 ID12_13415 ID12_13420 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_13420 SM00866 ID12_13420 ID12_13445 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_13480 SM00852 Probable molybdopterin binding domain ID12_13485 SM00382 ATPases associated with a variety of cellular activities ID12_13490 SM00322 K homology RNA-binding domain ID12_13490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_13510 SM00829 Enoylreductase ID12_13525 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_13540 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ID12_13540 SM00534 ATPase domain of DNA mismatch repair MUTS family ID12_13545 SM00853 MutL C terminal dimerisation domain ID12_13545 SM01340 ID12_13545 ID12_13570 SM01058 CarD-like/TRCF domain ID12_13580 SM00028 Tetratricopeptide repeats ID12_13665 SM00646 ID12_13665 ID12_13670 SM00382 ATPases associated with a variety of cellular activities ID12_13690 SM00422 helix_turn_helix, mercury resistance ID12_13695 SM01230 ID12_13695 ID12_13735 SM00860 SMI1 / KNR4 family ID12_13765 SM00829 Enoylreductase ID12_13770 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_13785 SM00506 Appr-1"-p processing enzyme ID12_13800 SM00014 Acid phosphatase homologues ID12_13850 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen ID12_13925 SM00020 Trypsin-like serine protease ID12_13960 SM00257 Lysin motif ID12_13965 SM00857 Resolvase, N terminal domain ID12_13975 SM00861 Transketolase, pyrimidine binding domain ID12_14065 SM01207 ID12_14065 ID12_14070 SM00881 CoA binding domain ID12_14075 SM00387 Histidine kinase-like ATPases ID12_14075 SM00433 TopoisomeraseII ID12_14080 SM00434 DNA Topoisomerase IV ID12_14100 SM01329 ID12_14100 ID12_14105 SM01266 ID12_14105 ID12_14110 SM00226 Low molecular weight phosphatase family ID12_14120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ID12_14215 SM00422 helix_turn_helix, mercury resistance ID12_14230 SM01061 CAT RNA binding domain ID12_14240 SM00387 Histidine kinase-like ATPases ID12_14240 SM00388 His Kinase A (phosphoacceptor) domain ID12_14245 SM00448 cheY-homologous receiver domain ID12_14245 SM00862 Transcriptional regulatory protein, C terminal ID12_14255 SM00606 Cellulose Binding Domain Type IV ID12_14290 SM00354 helix_turn _helix lactose operon repressor ID12_14325 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_14355 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_14390 SM00155 Phospholipase D. Active site motifs. ID12_14400 SM00100 Cyclic nucleotide-monophosphate binding domain ID12_14460 SM00878 Biotin carboxylase C-terminal domain ID12_14485 SM00420 helix_turn_helix, Deoxyribose operon repressor ID12_14485 SM01134 ID12_14485 ID12_14610 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ID12_14640 SM00382 ATPases associated with a variety of cellular activities ID12_14645 SM00382 ATPases associated with a variety of cellular activities ID12_14650 SM00422 helix_turn_helix, mercury resistance ID12_14665 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ID12_14680 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ID12_14745 SM00849 Metallo-beta-lactamase superfamily ID12_14750 SM00871 Bacterial transcription activator, effector binding domain ID12_14770 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ID12_14810 SM00257 Lysin motif ID12_14815 SM00341 Helicase and RNase D C-terminal ID12_14815 SM00487 DEAD-like helicases superfamily ID12_14815 SM00490 helicase superfamily c-terminal domain ID12_14815 SM00956 ID12_14815 ID12_14870 SM00861 Transketolase, pyrimidine binding domain ID12_14875 SM00327 von Willebrand factor (vWF) type A domain ID12_14880 SM00382 ATPases associated with a variety of cellular activities ID12_14890 SM00257 Lysin motif ID12_14960 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_14960 SM00245 tail specific protease ID12_14990 SM00014 Acid phosphatase homologues ID12_15025 SM00091 PAS domain ID12_15025 SM00382 ATPases associated with a variety of cellular activities ID12_15070 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_15175 SM00567 E-Z type HEAT repeats ID12_15175 SM00932 Scaffold protein Nfu/NifU N terminal ID12_15180 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_15210 SM00357 Cold shock protein domain ID12_15245 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ID12_15245 SM00475 5'-3' exonuclease ID12_15300 SM00491 ID12_15300 ID12_15310 SM00981 ID12_15310 ID12_15335 SM00487 DEAD-like helicases superfamily ID12_15335 SM00490 helicase superfamily c-terminal domain ID12_15395 SM00478 endonuclease III ID12_15395 SM00525 ID12_15395 ID12_15420 SM00479 ID12_15420 ID12_15420 SM00491 ID12_15420 ID12_15460 SM00851 MGS-like domain ID12_15510 SM00914 ID12_15510 ID12_15515 SM00028 Tetratricopeptide repeats ID12_15580 SM00138 Methyltransferase, chemotaxis proteins ID12_15585 SM00562 ID12_15585 ID12_15615 SM00411 bacterial (prokaryotic) histone like domain ID12_15665 SM01240 ID12_15665 ID12_15670 SM00316 Ribosomal protein S1-like RNA-binding domain ID12_15710 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ID12_15730 SM00257 Lysin motif ID12_15740 SM00487 DEAD-like helicases superfamily ID12_15740 SM00490 helicase superfamily c-terminal domain ID12_15765 SM00257 Lysin motif ID12_15780 SM00091 PAS domain ID12_15780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ID12_15780 SM00387 Histidine kinase-like ATPases ID12_15780 SM00388 His Kinase A (phosphoacceptor) domain ID12_15785 SM00448 cheY-homologous receiver domain ID12_15785 SM00862 Transcriptional regulatory protein, C terminal ID12_15805 SM00363 S4 RNA-binding domain ID12_15945 SM00387 Histidine kinase-like ATPases ID12_15955 SM00936 Penicillin-binding protein 5, C-terminal domain ID12_16030 SM00028 Tetratricopeptide repeats ID12_16100 SM00849 Metallo-beta-lactamase superfamily ID12_16150 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_16150 SM00866 ID12_16150 ID12_16190 SM01350 ID12_16190 ID12_16210 SM00260 Two component signalling adaptor domain ID12_16245 SM00382 ATPases associated with a variety of cellular activities ID12_16255 SM00062 Bacterial periplasmic substrate-binding proteins ID12_16255 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ID12_16265 SM00046 Diacylglycerol kinase catalytic domain (presumed) ID12_16280 SM00861 Transketolase, pyrimidine binding domain ID12_16300 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ID12_16315 SM00091 PAS domain ID12_16315 SM00382 ATPases associated with a variety of cellular activities ID12_16340 SM00448 cheY-homologous receiver domain ID12_16345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ID12_16360 SM00363 S4 RNA-binding domain ID12_16365 SM00861 Transketolase, pyrimidine binding domain ID12_16400 SM00878 Biotin carboxylase C-terminal domain ID12_16445 SM00382 ATPases associated with a variety of cellular activities ID12_16455 SM00841 Elongation factor P, C-terminal ID12_16455 SM01185 ID12_16455 ID12_16490 SM00529 Helix-turn-helix diphteria tox regulatory element ID12_16500 SM00450 Rhodanese Homology Domain ID12_16520 SM00487 DEAD-like helicases superfamily ID12_16520 SM00490 helicase superfamily c-terminal domain ID12_16535 SM00530 Helix-turn-helix XRE-family like proteins ID12_16595 SM00382 ATPases associated with a variety of cellular activities ID12_16625 SM00849 Metallo-beta-lactamase superfamily ID12_16645 SM00631 ID12_16645 ID12_16665 SM00028 Tetratricopeptide repeats ID12_16705 SM00382 ATPases associated with a variety of cellular activities ID12_16710 SM00382 ATPases associated with a variety of cellular activities ID12_16795 SM00382 ATPases associated with a variety of cellular activities ID12_16810 SM00518 AP endonuclease family 2 ID12_16815 SM00487 DEAD-like helicases superfamily ID12_16815 SM00490 helicase superfamily c-terminal domain ID12_16850 SM00400 zinc finger ID12_16850 SM00493 ID12_16850 ID12_16865 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_16910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_16960 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_16975 SM00271 DnaJ molecular chaperone homology domain ID12_16995 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_17000 SM00838 Elongation factor G C-terminus ID12_17035 SM00849 Metallo-beta-lactamase superfamily ID12_17045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ID12_17065 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_17075 SM01103 ID12_17075 ID12_17115 SM00028 Tetratricopeptide repeats ID12_17180 SM00382 ATPases associated with a variety of cellular activities ID12_17215 SM01007 Class II Aldolase and Adducin N-terminal domain ID12_17225 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_17235 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_17250 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ID12_17335 SM00382 ATPases associated with a variety of cellular activities ID12_17340 SM00062 Bacterial periplasmic substrate-binding proteins ID12_17360 SM00829 Enoylreductase ID12_17405 SM00382 ATPases associated with a variety of cellular activities ID12_17520 SM00732 Likely ribonuclease with RNase H fold. ID12_17530 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ID12_17540 SM00382 ATPases associated with a variety of cellular activities ID12_17545 SM00062 Bacterial periplasmic substrate-binding proteins ID12_17545 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ID12_17580 SM00028 Tetratricopeptide repeats ID12_17600 SM00382 ATPases associated with a variety of cellular activities ID12_17625 SM00287 Bacterial SH3 domain homologues ID12_17625 SM00646 ID12_17625 ID12_17635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ID12_17635 SM00954 Region found in RelA / SpoT proteins ID12_17685 SM01323 ID12_17685 ID12_17705 SM00382 ATPases associated with a variety of cellular activities ID12_17710 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ID12_17750 SM00257 Lysin motif ID12_17795 SM01317 ID12_17795 ID12_17890 SM00257 Lysin motif ID12_17900 SM01004 Delta-aminolevulinic acid dehydratase ID12_17935 SM00382 ATPases associated with a variety of cellular activities ID12_17935 SM00464 Found in ATP-dependent protease La (LON) ID12_17940 SM00382 ATPases associated with a variety of cellular activities ID12_17945 SM00382 ATPases associated with a variety of cellular activities ID12_17945 SM00994 ClpX C4-type zinc finger ID12_17945 SM01086 C-terminal, D2-small domain, of ClpB protein ID12_17970 SM01329 ID12_17970 ID12_17975 SM00917 LeuA allosteric (dimerisation) domain ID12_18040 SM00612 ID12_18040 ID12_18095 SM00909 Sporulation and spore germination ID12_18105 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_18110 SM00421 helix_turn_helix, Lux Regulon ID12_18165 SM00465 GIY-YIG type nucleases (URI domain) ID12_18175 SM00813 Alpha-L-arabinofuranosidase C-terminus ID12_18180 SM00893 Electron transfer flavoprotein domain ID12_18185 SM00893 Electron transfer flavoprotein domain ID12_18215 SM00463 Small MutS-related domain ID12_18215 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ID12_18215 SM00534 ATPase domain of DNA mismatch repair MUTS family ID12_18220 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ID12_18220 SM00481 DNA polymerase alpha chain like domain ID12_18220 SM00483 DNA polymerase X family ID12_18240 SM00873 B3/4 domain ID12_18240 SM00874 tRNA synthetase B5 domain ID12_18240 SM00896 Ferredoxin-fold anticodon binding domain ID12_18250 SM00967 RNA 2'-O ribose methyltransferase substrate binding ID12_18310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ID12_18310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ID12_18315 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ID12_18330 SM00382 ATPases associated with a variety of cellular activities ID12_18355 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ID12_18370 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ID12_18370 SM01232 ID12_18370 ID12_18375 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ID12_18375 SM00474 3'-5' exonuclease ID12_18375 SM00475 5'-3' exonuclease ID12_18375 SM00482 DNA polymerase A domain ID12_18380 SM00387 Histidine kinase-like ATPases ID12_18380 SM00388 His Kinase A (phosphoacceptor) domain ID12_18385 SM00448 cheY-homologous receiver domain ID12_18385 SM00862 Transcriptional regulatory protein, C terminal ID12_18395 SM01329 ID12_18395 ID12_18440 SM00919 Malic enzyme, NAD binding domain ID12_18440 SM01274 ID12_18440 ID12_18445 SM00481 DNA polymerase alpha chain like domain ID12_18480 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_18485 SM00849 Metallo-beta-lactamase superfamily ID12_18510 SM00852 Probable molybdopterin binding domain ID12_18555 SM00487 DEAD-like helicases superfamily ID12_18555 SM00490 helicase superfamily c-terminal domain ID12_18575 SM00421 helix_turn_helix, Lux Regulon ID12_18575 SM00448 cheY-homologous receiver domain ID12_18585 SM00448 cheY-homologous receiver domain ID12_18585 SM00862 Transcriptional regulatory protein, C terminal ID12_18590 SM00387 Histidine kinase-like ATPases ID12_18605 SM00382 ATPases associated with a variety of cellular activities ID12_18625 SM00347 helix_turn_helix multiple antibiotic resistance protein ID12_18655 SM00981 ID12_18655 ID12_18690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ID12_18700 SM00363 S4 RNA-binding domain ID12_18700 SM01390 ID12_18700 ID12_18730 SM00363 S4 RNA-binding domain ID12_18745 SM00116 Domain in cystathionine beta-synthase and other proteins. ID12_18755 SM00354 helix_turn _helix lactose operon repressor ID12_18760 SM00830 Chorismate mutase type II ID12_18785 SM00382 ATPases associated with a variety of cellular activities ID12_18785 SM00843 ID12_18785 ID12_18825 SM00919 Malic enzyme, NAD binding domain ID12_18825 SM01274 ID12_18825 ID12_18830 SM00849 Metallo-beta-lactamase superfamily ID12_18850 SM00046 Diacylglycerol kinase catalytic domain (presumed) ID12_18885 SM00420 helix_turn_helix, Deoxyribose operon repressor ID12_18890 SM00363 S4 RNA-binding domain ID12_18925 SM00450 Rhodanese Homology Domain ID12_18955 SM00342 helix_turn_helix, arabinose operon control protein ID12_19015 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ID12_19015 SM00091 PAS domain ID12_19030 SM00382 ATPases associated with a variety of cellular activities ID12_19040 SM00382 ATPases associated with a variety of cellular activities ID12_19045 SM00345 helix_turn_helix gluconate operon transcriptional repressor ID12_19060 SM00729 Elongator protein 3, MiaB family, Radical SAM ID12_19125 SM00563 Phosphate acyltransferases ID12_19140 SM00382 ATPases associated with a variety of cellular activities ID12_19200 SM01234 ID12_19200 ID12_19205 SM00947 Carbonic anhydrase ID12_19240 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ID12_19425 SM00028 Tetratricopeptide repeats