locus-tag class description BEN31_00055 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BEN31_00055 PF01612 3'-5' exonuclease BEN31_00055 PF00476 DNA polymerase family A BEN31_00055 PF01367 5'-3' exonuclease, C-terminal SAM fold BEN31_00060 PF14579 Helix-hairpin-helix motif BEN31_00060 PF00929 Exonuclease BEN31_00060 PF02811 PHP domain BEN31_00060 PF07733 Bacterial DNA polymerase III alpha NTPase domain BEN31_00060 PF11490 DNA polymerase III polC-type N-terminus II BEN31_00060 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BEN31_00105 PF07972 NrdI Flavodoxin like BEN31_00110 PF08343 Ribonucleotide reductase N-terminal BEN31_00110 PF00317 Ribonucleotide reductase, all-alpha domain BEN31_00110 PF02867 Ribonucleotide reductase, barrel domain BEN31_00115 PF00268 Ribonucleotide reductase, small chain BEN31_00135 PF02511 Thymidylate synthase complementing protein BEN31_00160 PF00145 C-5 cytosine-specific DNA methylase BEN31_00160 PF01381 Helix-turn-helix BEN31_00170 PF12950 TaqI-like C-terminal specificity domain BEN31_00170 PF07669 Eco57I restriction-modification methylase BEN31_00235 PF00589 Phage integrase family BEN31_00315 PF13457 GW (Gly-Tryp) dipeptide domain BEN31_00315 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BEN31_00345 PF01510 N-acetylmuramoyl-L-alanine amidase BEN31_00345 PF01471 Putative peptidoglycan binding domain BEN31_00360 PF08863 YolD-like protein BEN31_00380 PF01497 Periplasmic binding protein BEN31_00385 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BEN31_00390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN31_00395 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_00400 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_00400 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN31_00405 PF00005 ABC transporter BEN31_00410 PF00005 ABC transporter BEN31_00420 PF13739 Deacetylase PdaC BEN31_00420 PF11738 Protein of unknown function (DUF3298) BEN31_00420 PF01522 Polysaccharide deacetylase BEN31_00425 PF01032 FecCD transport family BEN31_00430 PF01032 FecCD transport family BEN31_00435 PF01497 Periplasmic binding protein BEN31_00445 PF08671 Anti-repressor SinI BEN31_00445 PF01381 Helix-turn-helix BEN31_00450 PF02706 Chain length determinant protein BEN31_00455 PF13614 AAA domain BEN31_00460 PF02719 Polysaccharide biosynthesis protein BEN31_00465 PF13439 Glycosyltransferase Family 4 BEN31_00465 PF00534 Glycosyl transferases group 1 BEN31_00470 PF00535 Glycosyl transferase family 2 BEN31_00475 PF13439 Glycosyltransferase Family 4 BEN31_00475 PF00534 Glycosyl transferases group 1 BEN31_00485 PF00535 Glycosyl transferase family 2 BEN31_00490 PF04230 Polysaccharide pyruvyl transferase BEN31_00495 PF14667 Polysaccharide biosynthesis C-terminal domain BEN31_00495 PF01943 Polysaccharide biosynthesis protein BEN31_00500 PF02397 Bacterial sugar transferase BEN31_00505 PF00132 Bacterial transferase hexapeptide (six repeats) BEN31_00505 PF17836 PglD N-terminal domain BEN31_00510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEN31_00515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN31_00520 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_00525 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_00530 PF00005 ABC transporter BEN31_00530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_00535 PF00005 ABC transporter BEN31_00535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_00540 PF01554 MatE BEN31_00545 PF09628 YvfG protein BEN31_00550 PF04963 Sigma-54 factor, core binding domain BEN31_00550 PF00309 Sigma-54 factor, Activator interacting domain (AID) BEN31_00550 PF04552 Sigma-54, DNA binding domain BEN31_00555 PF00392 Bacterial regulatory proteins, gntR family BEN31_00555 PF07729 FCD domain BEN31_00560 PF00158 Sigma-54 interaction domain BEN31_00560 PF02954 Bacterial regulatory protein, Fis family BEN31_00560 PF13426 PAS domain BEN31_00565 PF00202 Aminotransferase class-III BEN31_00570 PF00324 Amino acid permease BEN31_00575 PF04198 Putative sugar-binding domain BEN31_00580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BEN31_00580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEN31_00585 PF00162 Phosphoglycerate kinase BEN31_00590 PF00121 Triosephosphate isomerase BEN31_00595 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BEN31_00595 PF01676 Metalloenzyme superfamily BEN31_00600 PF03952 Enolase, N-terminal domain BEN31_00600 PF00113 Enolase, C-terminal TIM barrel domain BEN31_00610 PF00005 ABC transporter BEN31_00630 PF00583 Acetyltransferase (GNAT) family BEN31_00640 PF01914 MarC family integral membrane protein BEN31_00645 PF12802 MarR family BEN31_00650 PF00571 CBS domain BEN31_00650 PF00005 ABC transporter BEN31_00655 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_00660 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BEN31_00665 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_00670 PF01638 HxlR-like helix-turn-helix BEN31_00685 PF01381 Helix-turn-helix BEN31_00690 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN31_00690 PF18277 AbrB C-terminal domain BEN31_00695 PF03840 Preprotein translocase SecG subunit BEN31_00700 PF12146 Serine aminopeptidase, S33 BEN31_00705 PF08206 Ribonuclease B OB domain BEN31_00705 PF17876 Cold shock domain BEN31_00705 PF00575 S1 RNA binding domain BEN31_00705 PF00773 RNB domain BEN31_00710 PF01668 SmpB protein BEN31_00730 PF04542 Sigma-70 region 2 BEN31_00730 PF04545 Sigma-70, region 4 BEN31_00770 PF17356 Phage-like element PBSX protein XtrA BEN31_00835 PF03354 Phage Terminase BEN31_00915 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BEN31_00915 PF05257 CHAP domain BEN31_00940 PF05105 Bacteriophage holin family BEN31_00945 PF05036 Sporulation related domain BEN31_00945 PF01520 N-acetylmuramoyl-L-alanine amidase BEN31_00985 PF00072 Response regulator receiver domain BEN31_00985 PF00990 Diguanylate cyclase, GGDEF domain BEN31_00995 PF02583 Metal-sensitive transcriptional repressor BEN31_01000 PF00403 Heavy-metal-associated domain BEN31_01005 PF00403 Heavy-metal-associated domain BEN31_01010 PF00375 Sodium:dicarboxylate symporter family BEN31_01015 PF10415 Fumarase C C-terminus BEN31_01015 PF00206 Lyase BEN31_01020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_01025 PF00072 Response regulator receiver domain BEN31_01025 PF08664 YcbB domain BEN31_01030 PF13977 BetI-type transcriptional repressor, C-terminal BEN31_01030 PF00440 Bacterial regulatory proteins, tetR family BEN31_01040 PF01297 Zinc-uptake complex component A periplasmic BEN31_01045 PF00950 ABC 3 transport family BEN31_01050 PF00005 ABC transporter BEN31_01055 PF00403 Heavy-metal-associated domain BEN31_01060 PF13462 Thioredoxin BEN31_01065 PF02600 Disulfide bond formation protein DsbB BEN31_01070 PF03458 UPF0126 domain BEN31_01080 PF00999 Sodium/hydrogen exchanger family BEN31_01085 PF00480 ROK family BEN31_01090 PF00248 Aldo/keto reductase family BEN31_01095 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_01105 PF00884 Sulfatase BEN31_01110 PF04307 LexA-binding, inner membrane-associated putative hydrolase BEN31_01120 PF09575 Small spore protein J (Spore_SspJ) BEN31_01125 PF13520 Amino acid permease BEN31_01130 PF01497 Periplasmic binding protein BEN31_01135 PF01032 FecCD transport family BEN31_01140 PF01032 FecCD transport family BEN31_01145 PF00005 ABC transporter BEN31_01150 PF00486 Transcriptional regulatory protein, C terminal BEN31_01150 PF00072 Response regulator receiver domain BEN31_01155 PF00512 His Kinase A (phospho-acceptor) domain BEN31_01155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_01160 PF02614 Glucuronate isomerase BEN31_01165 PF00356 Bacterial regulatory proteins, lacI family BEN31_01170 PF01232 Mannitol dehydrogenase Rossmann domain BEN31_01170 PF08125 Mannitol dehydrogenase C-terminal domain BEN31_01175 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BEN31_01175 PF08666 SAF domain BEN31_01180 PF00295 Glycosyl hydrolases family 28 BEN31_01185 PF01497 Periplasmic binding protein BEN31_01190 PF01032 FecCD transport family BEN31_01195 PF00005 ABC transporter BEN31_01200 PF01923 Cobalamin adenosyltransferase BEN31_01210 PF04012 PspA/IM30 family BEN31_01220 PF09922 Cell wall-active antibiotics response 4TMS YvqF BEN31_01225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_01225 PF07730 Histidine kinase BEN31_01225 PF00672 HAMP domain BEN31_01230 PF00072 Response regulator receiver domain BEN31_01230 PF00196 Bacterial regulatory proteins, luxR family BEN31_01240 PF05504 Spore germination B3/ GerAC like, C-terminal BEN31_01245 PF03845 Spore germination protein BEN31_01250 PF03323 Bacillus/Clostridium GerA spore germination protein BEN31_01255 PF10415 Fumarase C C-terminus BEN31_01255 PF00206 Lyase BEN31_01260 PF00440 Bacterial regulatory proteins, tetR family BEN31_01265 PF00512 His Kinase A (phospho-acceptor) domain BEN31_01265 PF00672 HAMP domain BEN31_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_01270 PF00072 Response regulator receiver domain BEN31_01270 PF00486 Transcriptional regulatory protein, C terminal BEN31_01275 PF13180 PDZ domain BEN31_01280 PF00106 short chain dehydrogenase BEN31_01290 PF00005 ABC transporter BEN31_01295 PF10835 Protein of unknown function (DUF2573) BEN31_01300 PF07875 Coat F domain BEN31_01310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BEN31_01310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BEN31_01310 PF00378 Enoyl-CoA hydratase/isomerase BEN31_01315 PF02803 Thiolase, C-terminal domain BEN31_01315 PF00108 Thiolase, N-terminal domain BEN31_01320 PF02770 Acyl-CoA dehydrogenase, middle domain BEN31_01320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN31_01320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN31_01325 PF03960 ArsC family BEN31_01330 PF01597 Glycine cleavage H-protein BEN31_01335 PF10830 Protein of unknown function (DUF2553) BEN31_01340 PF01751 Toprim domain BEN31_01345 PF00085 Thioredoxin BEN31_01350 PF02036 SCP-2 sterol transfer family BEN31_01355 PF09383 NIL domain BEN31_01355 PF00005 ABC transporter BEN31_01360 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_01365 PF03180 NLPA lipoprotein BEN31_01370 PF02627 Carboxymuconolactone decarboxylase family BEN31_01375 PF00005 ABC transporter BEN31_01380 PF01458 Uncharacterized protein family (UPF0051) BEN31_01385 PF00266 Aminotransferase class-V BEN31_01390 PF01592 NifU-like N terminal domain BEN31_01395 PF01458 Uncharacterized protein family (UPF0051) BEN31_01400 PF02525 Flavodoxin-like fold BEN31_01410 PF04235 Protein of unknown function (DUF418) BEN31_01415 PF00486 Transcriptional regulatory protein, C terminal BEN31_01415 PF00072 Response regulator receiver domain BEN31_01420 PF00512 His Kinase A (phospho-acceptor) domain BEN31_01425 PF06146 Phosphate-starvation-inducible E BEN31_01430 PF01497 Periplasmic binding protein BEN31_01435 PF01032 FecCD transport family BEN31_01440 PF01032 FecCD transport family BEN31_01450 PF04231 Endonuclease I BEN31_01455 PF00266 Aminotransferase class-V BEN31_01460 PF07690 Major Facilitator Superfamily BEN31_01465 PF00190 Cupin BEN31_01470 PF07905 Purine catabolism regulatory protein-like family BEN31_01470 PF17853 GGDEF-like domain BEN31_01470 PF13556 PucR C-terminal helix-turn-helix domain BEN31_01475 PF01904 Protein of unknown function DUF72 BEN31_01480 PF02872 5'-nucleotidase, C-terminal domain BEN31_01485 PF08827 Domain of unknown function (DUF1805) BEN31_01490 PF09560 Sporulation protein YunB (Spo_YunB) BEN31_01495 PF01551 Peptidase family M23 BEN31_01500 PF04055 Radical SAM superfamily BEN31_01500 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BEN31_01505 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BEN31_01510 PF06265 Protein of unknown function (DUF1027) BEN31_01515 PF01934 Protein of unknown function DUF86 BEN31_01520 PF13344 Haloacid dehalogenase-like hydrolase BEN31_01525 PF04608 Phosphatidylglycerophosphatase A BEN31_01535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN31_01535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN31_01540 PF01842 ACT domain BEN31_01540 PF03447 Homoserine dehydrogenase, NAD binding domain BEN31_01540 PF00742 Homoserine dehydrogenase BEN31_01545 PF00291 Pyridoxal-phosphate dependent enzyme BEN31_01550 PF08544 GHMP kinases C terminal BEN31_01550 PF00288 GHMP kinases N terminal domain BEN31_01555 PF00326 Prolyl oligopeptidase family BEN31_01555 PF07676 WD40-like Beta Propeller Repeat BEN31_01560 PF01106 NifU-like domain BEN31_01565 PF07315 Protein of unknown function (DUF1462) BEN31_01575 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_01580 PF07293 Protein of unknown function (DUF1450) BEN31_01585 PF01678 Diaminopimelate epimerase BEN31_01590 PF01521 Iron-sulphur cluster biosynthesis BEN31_01595 PF10026 Predicted Zn-dependent protease (DUF2268) BEN31_01600 PF13411 MerR HTH family regulatory protein BEN31_01600 PF07739 TipAS antibiotic-recognition domain BEN31_01610 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_01615 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_01620 PF14068 Putative membrane protein BEN31_01625 PF06725 3D domain BEN31_01630 PF02681 Divergent PAP2 family BEN31_01635 PF02789 Cytosol aminopeptidase family, N-terminal domain BEN31_01635 PF00883 Cytosol aminopeptidase family, catalytic domain BEN31_01640 PF13726 Na+-H+ antiporter family BEN31_01640 PF03553 Na+/H+ antiporter family BEN31_01645 PF07070 SpoOM protein BEN31_01650 PF02632 BioY family BEN31_01655 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BEN31_01655 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BEN31_01660 PF06018 CodY GAF-like domain BEN31_01660 PF13556 PucR C-terminal helix-turn-helix domain BEN31_01660 PF17853 GGDEF-like domain BEN31_01665 PF06013 Proteins of 100 residues with WXG BEN31_01670 PF08817 WXG100 protein secretion system (Wss), protein YukD BEN31_01675 PF10140 WXG100 protein secretion system (Wss), protein YukC BEN31_01680 PF01580 FtsK/SpoIIIE family BEN31_01680 PF12538 DNA transporter BEN31_01690 PF17355 Family of unknown function (DUF5383) BEN31_01695 PF00106 short chain dehydrogenase BEN31_01700 PF01966 HD domain BEN31_01710 PF10842 Protein of unknown function (DUF2642) BEN31_01715 PF01594 AI-2E family transporter BEN31_01720 PF10676 Spore germination protein gerPA/gerPF BEN31_01730 PF14166 YueH-like protein BEN31_01735 PF07997 Protein of unknown function (DUF1694) BEN31_01740 PF00857 Isochorismatase family BEN31_01745 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain BEN31_01745 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BEN31_01745 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BEN31_01750 PF00563 EAL domain BEN31_01750 PF08668 HDOD domain BEN31_01760 PF08181 DegQ (SacQ) family BEN31_01765 PF00348 Polyprenyl synthetase BEN31_01770 PF07730 Histidine kinase BEN31_01770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_01775 PF00196 Bacterial regulatory proteins, luxR family BEN31_01775 PF00072 Response regulator receiver domain BEN31_01780 PF03061 Thioesterase superfamily BEN31_01785 PF03334 Na+/H+ antiporter subunit BEN31_01790 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BEN31_01795 PF01899 Na+/H+ ion antiporter subunit BEN31_01800 PF00361 Proton-conducting membrane transporter BEN31_01805 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BEN31_01810 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BEN31_01815 PF13244 Domain of unknown function (DUF4040) BEN31_01815 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BEN31_01815 PF00361 Proton-conducting membrane transporter BEN31_01825 PF03390 2-hydroxycarboxylate transporter family BEN31_01850 PF00072 Response regulator receiver domain BEN31_01855 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BEN31_01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_01855 PF00989 PAS fold BEN31_01855 PF17203 Single cache domain 3 BEN31_01860 PF17328 Family of unknown function (DUF5366) BEN31_01865 PF04134 Protein of unknown function, DUF393 BEN31_01870 PF00912 Transglycosylase BEN31_01870 PF00905 Penicillin binding protein transpeptidase domain BEN31_01875 PF07690 Major Facilitator Superfamily BEN31_01880 PF00929 Exonuclease BEN31_01885 PF08810 Kinase associated protein B BEN31_01895 PF00512 His Kinase A (phospho-acceptor) domain BEN31_01895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_01900 PF00155 Aminotransferase class I and II BEN31_01905 PF08958 Domain of unknown function (DUF1871) BEN31_01910 PF08386 TAP-like protein BEN31_01910 PF00561 alpha/beta hydrolase fold BEN31_01915 PF01037 Lrp/AsnC ligand binding domain BEN31_01920 PF00155 Aminotransferase class I and II BEN31_01925 PF00575 S1 RNA binding domain BEN31_01930 PF04070 Domain of unknown function (DUF378) BEN31_01935 PF00465 Iron-containing alcohol dehydrogenase BEN31_01940 PF00465 Iron-containing alcohol dehydrogenase BEN31_01945 PF00342 Phosphoglucose isomerase BEN31_01955 PF08868 YugN-like family BEN31_01960 PF02254 TrkA-N domain BEN31_01960 PF07885 Ion channel BEN31_01970 PF04298 Putative neutral zinc metallopeptidase BEN31_01975 PF01595 Cyclin M transmembrane N-terminal domain BEN31_01975 PF03471 Transporter associated domain BEN31_01975 PF00571 CBS domain BEN31_01980 PF01894 Uncharacterised protein family UPF0047 BEN31_01985 PF03060 Nitronate monooxygenase BEN31_02000 PF02743 Cache domain BEN31_02000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_02000 PF00672 HAMP domain BEN31_02005 PF02743 Cache domain BEN31_02005 PF00672 HAMP domain BEN31_02005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_02010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_02010 PF02743 Cache domain BEN31_02010 PF00672 HAMP domain BEN31_02015 PF02743 Cache domain BEN31_02015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_02015 PF00672 HAMP domain BEN31_02020 PF01965 DJ-1/PfpI family BEN31_02025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEN31_02025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN31_02040 PF01594 AI-2E family transporter BEN31_02045 PF02673 Bacitracin resistance protein BacA BEN31_02055 PF06968 Biotin and Thiamin Synthesis associated domain BEN31_02055 PF04055 Radical SAM superfamily BEN31_02065 PF01381 Helix-turn-helix BEN31_02080 PF05866 Endodeoxyribonuclease RusA BEN31_02085 PF17356 Phage-like element PBSX protein XtrA BEN31_02090 PF08281 Sigma-70, region 4 BEN31_02095 PF10668 Phage terminase small subunit BEN31_02100 PF04466 Phage terminase large subunit BEN31_02100 PF17288 Terminase RNAseH like domain BEN31_02105 PF04860 Phage portal protein BEN31_02110 PF14550 Putative phage serine protease XkdF BEN31_02115 PF05065 Phage capsid family BEN31_02120 PF11436 Protein of unknown function (DUF3199) BEN31_02125 PF12206 Domain of unknown function (DUF3599) BEN31_02130 PF04883 Bacteriophage HK97-gp10, putative tail-component BEN31_02145 PF04984 Phage tail sheath protein subtilisin-like domain BEN31_02145 PF17482 Phage tail sheath C-terminal domain BEN31_02145 PF17481 Phage tail sheath protein beta-sandwich domain BEN31_02150 PF09393 Phage tail tube protein BEN31_02155 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC BEN31_02160 PF01464 Transglycosylase SLT domain BEN31_02160 PF01464 Transglycosylase SLT domain BEN31_02165 PF01476 LysM domain BEN31_02175 PF10844 Protein of unknown function (DUF2577) BEN31_02180 PF10934 Protein of unknown function (DUF2634) BEN31_02185 PF04865 Baseplate J-like protein BEN31_02190 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) BEN31_02215 PF10960 BhlA holin family BEN31_02220 PF04688 SPP1 phage holin BEN31_02225 PF01471 Putative peptidoglycan binding domain BEN31_02225 PF01510 N-acetylmuramoyl-L-alanine amidase BEN31_02250 PF00465 Iron-containing alcohol dehydrogenase BEN31_02255 PF12867 DinB superfamily BEN31_02265 PF15975 Flotillin BEN31_02265 PF01145 SPFH domain / Band 7 family BEN31_02270 PF01098 Cell cycle protein BEN31_02275 PF01098 Cell cycle protein BEN31_02280 PF06803 Protein of unknown function (DUF1232) BEN31_02285 PF00583 Acetyltransferase (GNAT) family BEN31_02290 PF09515 Thiamine transporter protein (Thia_YuaJ) BEN31_02415 PF03073 TspO/MBR family BEN31_02420 PF01258 Prokaryotic dksA/traR C4-type zinc finger BEN31_02425 PF01040 UbiA prenyltransferase family BEN31_02430 PF00425 chorismate binding enzyme BEN31_02435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN31_02435 PF16582 Middle domain of thiamine pyrophosphate BEN31_02435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN31_02440 PF00561 alpha/beta hydrolase fold BEN31_02445 PF00378 Enoyl-CoA hydratase/isomerase BEN31_02450 PF00501 AMP-binding enzyme BEN31_02450 PF13193 AMP-binding enzyme C-terminal domain BEN31_02455 PF13378 Enolase C-terminal domain-like BEN31_02455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN31_02465 PF07561 Domain of Unknown Function (DUF1540) BEN31_02470 PF02322 Cytochrome bd terminal oxidase subunit II BEN31_02475 PF01654 Cytochrome bd terminal oxidase subunit I BEN31_02485 PF01197 Ribosomal protein L31 BEN31_02490 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BEN31_02490 PF01297 Zinc-uptake complex component A periplasmic BEN31_02495 PF00484 Carbonic anhydrase BEN31_02500 PF01809 Putative membrane protein insertion efficiency factor BEN31_02505 PF02664 S-Ribosylhomocysteinase (LuxS) BEN31_02510 PF13115 YtkA-like BEN31_02520 PF00210 Ferritin-like domain BEN31_02530 PF05105 Bacteriophage holin family BEN31_02545 PF02342 TerD domain BEN31_02550 PF00293 NUDIX domain BEN31_02555 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_02560 PF00005 ABC transporter BEN31_02580 PF00326 Prolyl oligopeptidase family BEN31_02585 PF10763 Protein of unknown function (DUF2584) BEN31_02590 PF01293 Phosphoenolpyruvate carboxykinase BEN31_02595 PF02772 S-adenosylmethionine synthetase, central domain BEN31_02595 PF00438 S-adenosylmethionine synthetase, N-terminal domain BEN31_02595 PF02773 S-adenosylmethionine synthetase, C-terminal domain BEN31_02600 PF13537 Glutamine amidotransferase domain BEN31_02600 PF00733 Asparagine synthase BEN31_02605 PF00132 Bacterial transferase hexapeptide (six repeats) BEN31_02610 PF12146 Serine aminopeptidase, S33 BEN31_02615 PF10776 Protein of unknown function (DUF2600) BEN31_02620 PF06962 Putative rRNA methylase BEN31_02625 PF16199 Radical_SAM C-terminal domain BEN31_02625 PF04055 Radical SAM superfamily BEN31_02630 PF10732 Protein of unknown function (DUF2524) BEN31_02640 PF00392 Bacterial regulatory proteins, gntR family BEN31_02645 PF00005 ABC transporter BEN31_02655 PF00005 ABC transporter BEN31_02660 PF02687 FtsX-like permease family BEN31_02660 PF12704 MacB-like periplasmic core domain BEN31_02665 PF04791 LMBR1-like membrane protein BEN31_02670 PF01740 STAS domain BEN31_02670 PF13426 PAS domain BEN31_02675 PF14074 Protein of unknown function (DUF4257) BEN31_02680 PF08264 Anticodon-binding domain of tRNA BEN31_02680 PF09334 tRNA synthetases class I (M) BEN31_02680 PF00133 tRNA synthetases class I (I, L, M and V) BEN31_02680 PF13603 Leucyl-tRNA synthetase, Domain 2 BEN31_02685 PF01738 Dienelactone hydrolase family BEN31_02690 PF01370 NAD dependent epimerase/dehydratase family BEN31_02695 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_02700 PF13416 Bacterial extracellular solute-binding protein BEN31_02705 PF00248 Aldo/keto reductase family BEN31_02710 PF07690 Major Facilitator Superfamily BEN31_02715 PF01638 HxlR-like helix-turn-helix BEN31_02720 PF12833 Helix-turn-helix domain BEN31_02720 PF17853 GGDEF-like domain BEN31_02725 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_02730 PF07470 Glycosyl Hydrolase Family 88 BEN31_02740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN31_02740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEN31_02745 PF04854 Protein of unknown function, DUF624 BEN31_02750 PF00581 Rhodanese-like domain BEN31_02755 PF10957 Sporulation protein Cse60 BEN31_02765 PF02028 BCCT, betaine/carnitine/choline family transporter BEN31_02780 PF14667 Polysaccharide biosynthesis C-terminal domain BEN31_02780 PF01943 Polysaccharide biosynthesis protein BEN31_02785 PF01479 S4 domain BEN31_02785 PF00849 RNA pseudouridylate synthase BEN31_02790 PF08220 DeoR-like helix-turn-helix domain BEN31_02795 PF00860 Permease family BEN31_02800 PF01546 Peptidase family M20/M25/M40 BEN31_02805 PF03575 Peptidase family S51 BEN31_02810 PF00291 Pyridoxal-phosphate dependent enzyme BEN31_02825 PF00781 Diacylglycerol kinase catalytic domain BEN31_02830 PF01636 Phosphotransferase enzyme family BEN31_02835 PF14165 YtzH-like protein BEN31_02840 PF02390 Putative methyltransferase BEN31_02845 PF00753 Metallo-beta-lactamase superfamily BEN31_02850 PF03949 Malic enzyme, NAD binding domain BEN31_02850 PF00390 Malic enzyme, N-terminal domain BEN31_02855 PF03413 Peptidase propeptide and YPEB domain BEN31_02860 PF05343 M42 glutamyl aminopeptidase BEN31_02865 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ BEN31_02875 PF00085 Thioredoxin BEN31_02880 PF07285 Protein of unknown function (DUF1444) BEN31_02885 PF14794 Domain of unknown function (DUF4479) BEN31_02885 PF01588 Putative tRNA binding domain BEN31_02890 PF17854 FtsK alpha domain BEN31_02890 PF01580 FtsK/SpoIIIE family BEN31_02890 PF09397 Ftsk gamma domain BEN31_02895 PF01225 Mur ligase family, catalytic domain BEN31_02895 PF02875 Mur ligase family, glutamate ligase domain BEN31_02895 PF08245 Mur ligase middle domain BEN31_02900 PF06103 Bacterial protein of unknown function (DUF948) BEN31_02905 PF12732 YtxH-like protein BEN31_02910 PF11009 Protein of unknown function (DUF2847) BEN31_02915 PF01817 Chorismate mutase type II BEN31_02915 PF00793 DAHP synthetase I family BEN31_02920 PF00356 Bacterial regulatory proteins, lacI family BEN31_02925 PF00850 Histone deacetylase domain BEN31_02930 PF00571 CBS domain BEN31_02935 PF00583 Acetyltransferase (GNAT) family BEN31_02940 PF00501 AMP-binding enzyme BEN31_02940 PF13193 AMP-binding enzyme C-terminal domain BEN31_02945 PF00579 tRNA synthetases class I (W and Y) BEN31_02945 PF01479 S4 domain BEN31_02950 PF01674 Lipase (class 2) BEN31_02960 PF00857 Isochorismatase family BEN31_02975 PF00163 Ribosomal protein S4/S9 N-terminal domain BEN31_02975 PF01479 S4 domain BEN31_02980 PF13185 GAF domain BEN31_02985 PF00440 Bacterial regulatory proteins, tetR family BEN31_02990 PF02811 PHP domain BEN31_02995 PF06160 Septation ring formation regulator, EzrA BEN31_03000 PF05525 Branched-chain amino acid transport protein BEN31_03005 PF05525 Branched-chain amino acid transport protein BEN31_03010 PF00266 Aminotransferase class-V BEN31_03015 PF02926 THUMP domain BEN31_03015 PF02568 Thiamine biosynthesis protein (ThiI) BEN31_03020 PF00269 Small, acid-soluble spore proteins, alpha/beta type BEN31_03025 PF00501 AMP-binding enzyme BEN31_03025 PF13193 AMP-binding enzyme C-terminal domain BEN31_03030 PF01810 LysE type translocator BEN31_03040 PF02525 Flavodoxin-like fold BEN31_03045 PF01979 Amidohydrolase family BEN31_03050 PF02687 FtsX-like permease family BEN31_03055 PF00005 ABC transporter BEN31_03060 PF03551 Transcriptional regulator PadR-like family BEN31_03065 PF01098 Cell cycle protein BEN31_03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_03075 PF00486 Transcriptional regulatory protein, C terminal BEN31_03075 PF00072 Response regulator receiver domain BEN31_03080 PF01497 Periplasmic binding protein BEN31_03085 PF00196 Bacterial regulatory proteins, luxR family BEN31_03085 PF00072 Response regulator receiver domain BEN31_03090 PF07730 Histidine kinase BEN31_03095 PF00487 Fatty acid desaturase BEN31_03100 PF00271 Helicase conserved C-terminal domain BEN31_03100 PF00270 DEAD/DEAH box helicase BEN31_03100 PF03880 DbpA RNA binding domain BEN31_03105 PF01513 ATP-NAD kinase BEN31_03110 PF01343 Peptidase family S49 BEN31_03115 PF06271 RDD family BEN31_03120 PF11167 Protein of unknown function (DUF2953) BEN31_03125 PF09579 Sporulation protein YtfJ (Spore_YtfJ) BEN31_03130 PF08534 Redoxin BEN31_03135 PF02384 N-6 DNA Methylase BEN31_03140 PF00871 Acetokinase family BEN31_03145 PF00994 Probable molybdopterin binding domain BEN31_03150 PF00764 Arginosuccinate synthase BEN31_03155 PF14698 Argininosuccinate lyase C-terminal BEN31_03155 PF00206 Lyase BEN31_03170 PF03061 Thioesterase superfamily BEN31_03170 PF00571 CBS domain BEN31_03170 PF07085 DRTGG domain BEN31_03170 PF00392 Bacterial regulatory proteins, gntR family BEN31_03175 PF14007 YtpI-like protein BEN31_03180 PF02272 DHHA1 domain BEN31_03180 PF01368 DHH family BEN31_03195 PF14034 Sporulation protein YtrH BEN31_03200 PF02811 PHP domain BEN31_03200 PF07733 Bacterial DNA polymerase III alpha NTPase domain BEN31_03200 PF01336 OB-fold nucleic acid binding domain BEN31_03200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BEN31_03200 PF14579 Helix-hairpin-helix motif BEN31_03205 PF03949 Malic enzyme, NAD binding domain BEN31_03205 PF00390 Malic enzyme, N-terminal domain BEN31_03210 PF17848 Acetyl-coA carboxylase zinc finger domain BEN31_03210 PF01039 Carboxyl transferase domain BEN31_03215 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BEN31_03220 PF00365 Phosphofructokinase BEN31_03225 PF00224 Pyruvate kinase, barrel domain BEN31_03225 PF02887 Pyruvate kinase, alpha/beta domain BEN31_03225 PF00391 PEP-utilising enzyme, mobile domain BEN31_03230 PF04186 FxsA cytoplasmic membrane protein BEN31_03235 PF01594 AI-2E family transporter BEN31_03240 PF04284 Protein of unknown function (DUF441) BEN31_03245 PF00285 Citrate synthase, C-terminal domain BEN31_03250 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN31_03255 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BEN31_03255 PF00056 lactate/malate dehydrogenase, NAD binding domain BEN31_03260 PF00072 Response regulator receiver domain BEN31_03260 PF00486 Transcriptional regulatory protein, C terminal BEN31_03265 PF00989 PAS fold BEN31_03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_03265 PF00512 His Kinase A (phospho-acceptor) domain BEN31_03265 PF16736 Single Cache-like BEN31_03270 PF01367 5'-3' exonuclease, C-terminal SAM fold BEN31_03270 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BEN31_03270 PF00476 DNA polymerase family A BEN31_03275 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BEN31_03275 PF06827 Zinc finger found in FPG and IleRS BEN31_03275 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BEN31_03280 PF02659 Putative manganese efflux pump BEN31_03285 PF01121 Dephospho-CoA kinase BEN31_03290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BEN31_03290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEN31_03295 PF02675 S-adenosylmethionine decarboxylase BEN31_03305 PF03477 ATP cone domain BEN31_03310 PF07261 Replication initiation and membrane attachment BEN31_03315 PF01695 IstB-like ATP binding protein BEN31_03315 PF07319 Primosomal protein DnaI N-terminus BEN31_03320 PF09335 SNARE associated Golgi protein BEN31_03325 PF08812 YtxC-like family BEN31_03330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEN31_03330 PF02824 TGS domain BEN31_03330 PF03129 Anticodon binding domain BEN31_03330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN31_03335 PF13426 PAS domain BEN31_03335 PF08447 PAS fold BEN31_03335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_03345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_03345 PF06580 Histidine kinase BEN31_03345 PF07694 5TMR of 5TMR-LYT BEN31_03350 PF04397 LytTr DNA-binding domain BEN31_03350 PF00072 Response regulator receiver domain BEN31_03355 PF03788 LrgA family BEN31_03360 PF04172 LrgB-like family BEN31_03365 PF05198 Translation initiation factor IF-3, N-terminal domain BEN31_03365 PF00707 Translation initiation factor IF-3, C-terminal domain BEN31_03370 PF01632 Ribosomal protein L35 BEN31_03375 PF00453 Ribosomal protein L20 BEN31_03380 PF06961 Protein of unknown function (DUF1294) BEN31_03390 PF05343 M42 glutamyl aminopeptidase BEN31_03395 PF13722 5TM C-terminal transporter carbon starvation CstA BEN31_03395 PF02554 Carbon starvation protein CstA BEN31_03400 PF14098 Small, acid-soluble spore protein I BEN31_03405 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEN31_03405 PF00588 SpoU rRNA Methylase family BEN31_03410 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BEN31_03410 PF01409 tRNA synthetases class II core domain (F) BEN31_03415 PF03483 B3/4 domain BEN31_03415 PF03147 Ferredoxin-fold anticodon binding domain BEN31_03415 PF01588 Putative tRNA binding domain BEN31_03415 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BEN31_03415 PF03484 tRNA synthetase B5 domain BEN31_03420 PF01351 Ribonuclease HII BEN31_03420 PF11858 Domain of unknown function (DUF3378) BEN31_03425 PF05164 Cell division protein ZapA BEN31_03430 PF02674 Colicin V production protein BEN31_03435 PF14716 Helix-hairpin-helix domain BEN31_03435 PF14791 DNA polymerase beta thumb BEN31_03435 PF02811 PHP domain BEN31_03440 PF01713 Smr domain BEN31_03440 PF00488 MutS domain V BEN31_03445 PF03994 Domain of Unknown Function (DUF350) BEN31_03455 PF13193 AMP-binding enzyme C-terminal domain BEN31_03455 PF00501 AMP-binding enzyme BEN31_03460 PF08359 YsiA-like protein, C-terminal region BEN31_03460 PF00440 Bacterial regulatory proteins, tetR family BEN31_03465 PF00378 Enoyl-CoA hydratase/isomerase BEN31_03470 PF01012 Electron transfer flavoprotein domain BEN31_03475 PF01012 Electron transfer flavoprotein domain BEN31_03475 PF00766 Electron transfer flavoprotein FAD-binding domain BEN31_03480 PF06964 Alpha-L-arabinofuranosidase C-terminal domain BEN31_03485 PF00085 Thioredoxin BEN31_03490 PF01541 GIY-YIG catalytic domain BEN31_03490 PF02151 UvrB/uvrC motif BEN31_03490 PF08459 UvrC Helix-hairpin-helix N-terminal BEN31_03495 PF13840 ACT domain BEN31_03495 PF01842 ACT domain BEN31_03495 PF00696 Amino acid kinase family BEN31_03500 PF10702 Protein of unknown function (DUF2507) BEN31_03505 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BEN31_03510 PF02910 Fumarate reductase flavoprotein C-term BEN31_03510 PF00890 FAD binding domain BEN31_03515 PF13183 4Fe-4S dicluster domain BEN31_03515 PF13085 2Fe-2S iron-sulfur cluster binding domain BEN31_03520 PF03061 Thioesterase superfamily BEN31_03525 PF02237 Biotin protein ligase C terminal domain BEN31_03525 PF03099 Biotin/lipoate A/B protein ligase family BEN31_03530 PF04303 PrpF protein BEN31_03535 PF03466 LysR substrate binding domain BEN31_03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_03540 PF03600 Citrate transporter BEN31_03545 PF00196 Bacterial regulatory proteins, luxR family BEN31_03550 PF01047 MarR family BEN31_03555 PF01177 Asp/Glu/Hydantoin racemase BEN31_03560 PF10646 Sporulation and spore germination BEN31_03565 PF01138 3' exoribonuclease family, domain 1 BEN31_03565 PF03725 3' exoribonuclease family, domain 2 BEN31_03570 PF01725 Ham1 family BEN31_03575 PF12850 Calcineurin-like phosphoesterase superfamily domain BEN31_03600 PF13193 AMP-binding enzyme C-terminal domain BEN31_03600 PF00501 AMP-binding enzyme BEN31_03605 PF03062 MBOAT, membrane-bound O-acyltransferase family BEN31_03610 PF00550 Phosphopantetheine attachment site BEN31_03615 PF04914 DltD protein BEN31_03620 PF06803 Protein of unknown function (DUF1232) BEN31_03625 PF10282 Lactonase, 7-bladed beta-propeller BEN31_03630 PF01063 Amino-transferase class IV BEN31_03635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN31_03635 PF00205 Thiamine pyrophosphate enzyme, central domain BEN31_03635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN31_03640 PF10369 Small subunit of acetolactate synthase BEN31_03640 PF01842 ACT domain BEN31_03645 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BEN31_03645 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BEN31_03650 PF00682 HMGL-like BEN31_03650 PF08502 LeuA allosteric (dimerisation) domain BEN31_03655 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN31_03660 PF00330 Aconitase family (aconitate hydratase) BEN31_03665 PF00694 Aconitase C-terminal domain BEN31_03675 PF05698 Bacterial trigger factor protein (TF) C-terminus BEN31_03675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEN31_03675 PF05697 Bacterial trigger factor protein (TF) BEN31_03680 PF10431 C-terminal, D2-small domain, of ClpB protein BEN31_03680 PF06689 ClpX C4-type zinc finger BEN31_03680 PF07724 AAA domain (Cdc48 subfamily) BEN31_03685 PF00004 ATPase family associated with various cellular activities (AAA) BEN31_03685 PF05362 Lon protease (S16) C-terminal proteolytic domain BEN31_03690 PF05362 Lon protease (S16) C-terminal proteolytic domain BEN31_03690 PF02190 ATP-dependent protease La (LON) substrate-binding domain BEN31_03690 PF00004 ATPase family associated with various cellular activities (AAA) BEN31_03695 PF01926 50S ribosome-binding GTPase BEN31_03705 PF01488 Shikimate / quinate 5-dehydrogenase BEN31_03705 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BEN31_03705 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BEN31_03710 PF01578 Cytochrome C assembly protein BEN31_03715 PF03900 Porphobilinogen deaminase, C-terminal domain BEN31_03715 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BEN31_03720 PF02602 Uroporphyrinogen-III synthase HemD BEN31_03725 PF00490 Delta-aminolevulinic acid dehydratase BEN31_03730 PF00202 Aminotransferase class-III BEN31_03735 PF01476 LysM domain BEN31_03750 PF08264 Anticodon-binding domain of tRNA BEN31_03750 PF10458 Valyl tRNA synthetase tRNA binding arm BEN31_03750 PF00133 tRNA synthetases class I (I, L, M and V) BEN31_03755 PF08245 Mur ligase middle domain BEN31_03755 PF02875 Mur ligase family, glutamate ligase domain BEN31_03760 PF01478 Type IV leader peptidase family BEN31_03760 PF06750 Bacterial Peptidase A24 N-terminal domain BEN31_03770 PF02545 Maf-like protein BEN31_03775 PF04002 RadC-like JAB domain BEN31_03785 PF04085 rod shape-determining protein MreC BEN31_03790 PF04093 rod shape-determining protein MreD BEN31_03795 PF03775 Septum formation inhibitor MinC, C-terminal domain BEN31_03800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BEN31_03805 PF01551 Peptidase family M23 BEN31_03810 PF02163 Peptidase family M50 BEN31_03815 PF00829 Ribosomal prokaryotic L21 protein BEN31_03820 PF04327 Cysteine protease Prp BEN31_03825 PF01016 Ribosomal L27 protein BEN31_03830 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BEN31_03830 PF14682 Sporulation initiation phospho-transferase B, C-terminal BEN31_03835 PF01018 GTP1/OBG BEN31_03835 PF09269 Domain of unknown function (DUF1967) BEN31_03835 PF01926 50S ribosome-binding GTPase BEN31_03840 PF01842 ACT domain BEN31_03845 PF00800 Prephenate dehydratase BEN31_03845 PF01842 ACT domain BEN31_03850 PF08279 HTH domain BEN31_03850 PF02829 3H domain BEN31_03855 PF00266 Aminotransferase class-V BEN31_03860 PF00890 FAD binding domain BEN31_03860 PF02910 Fumarate reductase flavoprotein C-term BEN31_03865 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BEN31_03865 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BEN31_03870 PF02445 Quinolinate synthetase A protein BEN31_03875 PF01476 LysM domain BEN31_03875 PF01476 LysM domain BEN31_03880 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BEN31_03885 PF13667 ThiC-associated domain BEN31_03885 PF01964 Radical SAM ThiC family BEN31_03900 PF08955 BofC C-terminal domain BEN31_03900 PF08977 Bypass of Forespore C, N terminal BEN31_03905 PF07499 RuvA, C-terminal domain BEN31_03905 PF01330 RuvA N terminal domain BEN31_03910 PF05491 RuvB C-terminal winged helix domain BEN31_03910 PF17864 RuvB AAA lid domain BEN31_03910 PF05496 Holliday junction DNA helicase RuvB P-loop domain BEN31_03915 PF11146 Protein of unknown function (DUF2905) BEN31_03920 PF02547 Queuosine biosynthesis protein BEN31_03925 PF01702 Queuine tRNA-ribosyltransferase BEN31_03930 PF02699 Preprotein translocase subunit BEN31_03935 PF12670 Protein of unknown function (DUF3792) BEN31_03940 PF04239 Protein of unknown function (DUF421) BEN31_03945 PF01943 Polysaccharide biosynthesis protein BEN31_03945 PF14667 Polysaccharide biosynthesis C-terminal domain BEN31_03950 PF13797 Post-transcriptional regulator BEN31_03955 PF02355 Protein export membrane protein BEN31_03955 PF07549 SecD/SecF GG Motif BEN31_03960 PF02080 TrkA-C domain BEN31_03965 PF06305 Lipopolysaccharide assembly protein A domain BEN31_03970 PF17768 RecJ OB domain BEN31_03970 PF02272 DHHA1 domain BEN31_03970 PF10141 Single-strand DNA-specific exonuclease, C terminal domain BEN31_03970 PF01368 DHH family BEN31_03975 PF00156 Phosphoribosyl transferase domain BEN31_03980 PF13291 ACT domain BEN31_03980 PF04607 Region found in RelA / SpoT proteins BEN31_03980 PF02824 TGS domain BEN31_03985 PF02580 D-Tyr-tRNA(Tyr) deacylase BEN31_03990 PF01520 N-acetylmuramoyl-L-alanine amidase BEN31_03990 PF08239 Bacterial SH3 domain BEN31_03995 PF13393 Histidyl-tRNA synthetase BEN31_03995 PF03129 Anticodon binding domain BEN31_04000 PF01336 OB-fold nucleic acid binding domain BEN31_04000 PF02938 GAD domain BEN31_04000 PF00152 tRNA synthetases class II (D, K and N) BEN31_04010 PF00899 ThiF family BEN31_04015 PF05496 Holliday junction DNA helicase RuvB P-loop domain BEN31_04015 PF16193 AAA C-terminal domain BEN31_04015 PF12002 MgsA AAA+ ATPase C terminal BEN31_04020 PF02082 Transcriptional regulator BEN31_04025 PF00266 Aminotransferase class-V BEN31_04035 PF13181 Tetratricopeptide repeat BEN31_04035 PF07719 Tetratricopeptide repeat BEN31_04040 PF13538 UvrD-like helicase C-terminal domain BEN31_04040 PF14490 Helix-hairpin-helix containing domain BEN31_04040 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain BEN31_04045 PF05239 PRC-barrel domain BEN31_04060 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_04065 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_04070 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_04075 PF00005 ABC transporter BEN31_04080 PF01594 AI-2E family transporter BEN31_04085 PF02272 DHHA1 domain BEN31_04085 PF01411 tRNA synthetases class II (A) BEN31_04085 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEN31_04090 PF06135 IreB regulatory phosphoprotein BEN31_04095 PF03652 Holliday junction resolvase BEN31_04100 PF06949 Protein of unknown function (DUF1292) BEN31_04105 PF02632 BioY family BEN31_04110 PF00501 AMP-binding enzyme BEN31_04110 PF13193 AMP-binding enzyme C-terminal domain BEN31_04115 PF00108 Thiolase, N-terminal domain BEN31_04115 PF02803 Thiolase, C-terminal domain BEN31_04120 PF02618 YceG-like family BEN31_04140 PF00485 Phosphoribulokinase / Uridine kinase family BEN31_04145 PF03449 Transcription elongation factor, N-terminal BEN31_04145 PF01272 Transcription elongation factor, GreA/GreB, C-term BEN31_04150 PF00905 Penicillin binding protein transpeptidase domain BEN31_04150 PF03717 Penicillin-binding Protein dimerisation domain BEN31_04155 PF07423 Domain of unknown function (DUF1510) BEN31_04160 PF10750 Protein of unknown function (DUF2536) BEN31_04165 PF13649 Methyltransferase domain BEN31_04170 PF01048 Phosphorylase superfamily BEN31_04175 PF00291 Pyridoxal-phosphate dependent enzyme BEN31_04180 PF01053 Cys/Met metabolism PLP-dependent enzyme BEN31_04185 PF14143 YrhC-like protein BEN31_04190 PF09501 Probable sporulation protein (Bac_small_yrzI) BEN31_04195 PF08241 Methyltransferase domain BEN31_04200 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_04200 PF00107 Zinc-binding dehydrogenase BEN31_04205 PF08241 Methyltransferase domain BEN31_04220 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_04220 PF00107 Zinc-binding dehydrogenase BEN31_04225 PF05067 Manganese containing catalase BEN31_04230 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_04235 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_04240 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_04245 PF00005 ABC transporter BEN31_04250 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BEN31_04250 PF02770 Acyl-CoA dehydrogenase, middle domain BEN31_04250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN31_04255 PF00905 Penicillin binding protein transpeptidase domain BEN31_04270 PF14176 YxiJ-like protein BEN31_04280 PF00135 Carboxylesterase family BEN31_04285 PF01638 HxlR-like helix-turn-helix BEN31_04290 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BEN31_04295 PF01380 SIS domain BEN31_04305 PF00392 Bacterial regulatory proteins, gntR family BEN31_04315 PF00596 Class II Aldolase and Adducin N-terminal domain BEN31_04320 PF11762 L-arabinose isomerase C-terminal domain BEN31_04320 PF02610 L-arabinose isomerase BEN31_04325 PF00083 Sugar (and other) transporter BEN31_04340 PF00005 ABC transporter BEN31_04375 PF11738 Protein of unknown function (DUF3298) BEN31_04375 PF13739 Deacetylase PdaC BEN31_04375 PF01522 Polysaccharide deacetylase BEN31_04385 PF13344 Haloacid dehalogenase-like hydrolase BEN31_04385 PF00293 NUDIX domain BEN31_04390 PF02801 Beta-ketoacyl synthase, C-terminal domain BEN31_04390 PF00109 Beta-ketoacyl synthase, N-terminal domain BEN31_04400 PF00440 Bacterial regulatory proteins, tetR family BEN31_04405 PF00364 Biotin-requiring enzyme BEN31_04405 PF00561 alpha/beta hydrolase fold BEN31_04410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BEN31_04415 PF00106 short chain dehydrogenase BEN31_04420 PF00106 short chain dehydrogenase BEN31_04425 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_04425 PF00107 Zinc-binding dehydrogenase BEN31_04430 PF04545 Sigma-70, region 4 BEN31_04430 PF04542 Sigma-70 region 2 BEN31_04435 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_04440 PF13739 Deacetylase PdaC BEN31_04440 PF11738 Protein of unknown function (DUF3298) BEN31_04440 PF01522 Polysaccharide deacetylase BEN31_04445 PF00657 GDSL-like Lipase/Acylhydrolase BEN31_04450 PF08970 Sporulation inhibitor A BEN31_04460 PF01926 50S ribosome-binding GTPase BEN31_04465 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BEN31_04465 PF01488 Shikimate / quinate 5-dehydrogenase BEN31_04465 PF08501 Shikimate dehydrogenase substrate binding domain BEN31_04470 PF01985 CRS1 / YhbY (CRM) domain BEN31_04475 PF01467 Cytidylyltransferase-like BEN31_04480 PF01966 HD domain BEN31_04490 PF13649 Methyltransferase domain BEN31_04495 PF03807 NADP oxidoreductase coenzyme F420-dependent BEN31_04495 PF14748 Pyrroline-5-carboxylate reductase dimerisation BEN31_04505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEN31_04510 PF03772 Competence protein BEN31_04510 PF00753 Metallo-beta-lactamase superfamily BEN31_04510 PF13567 Domain of unknown function (DUF4131) BEN31_04515 PF14141 YqzM-like protein BEN31_04520 PF06144 DNA polymerase III, delta subunit BEN31_04525 PF01649 Ribosomal protein S20 BEN31_04530 PF03418 Germination protease BEN31_04535 PF07454 Stage II sporulation protein P (SpoIIP) BEN31_04540 PF12438 Protein of unknown function (DUF3679) BEN31_04545 PF00679 Elongation factor G C-terminus BEN31_04545 PF00009 Elongation factor Tu GTP binding domain BEN31_04545 PF06421 GTP-binding protein LepA C-terminus BEN31_04545 PF03144 Elongation factor Tu domain 2 BEN31_04550 PF04055 Radical SAM superfamily BEN31_04550 PF06969 HemN C-terminal domain BEN31_04555 PF01628 HrcA protein C terminal domain BEN31_04560 PF01025 GrpE BEN31_04565 PF00012 Hsp70 protein BEN31_04570 PF00684 DnaJ central domain BEN31_04570 PF01556 DnaJ C terminal domain BEN31_04570 PF00226 DnaJ domain BEN31_04580 PF04452 RNA methyltransferase BEN31_04585 PF04055 Radical SAM superfamily BEN31_04585 PF00919 Uncharacterized protein family UPF0004 BEN31_04585 PF01938 TRAM domain BEN31_04590 PF02690 Na+/Pi-cotransporter BEN31_04595 PF01165 Ribosomal protein S21 BEN31_04600 PF09424 Yqey-like protein BEN31_04605 PF01972 Serine dehydrogenase proteinase BEN31_04605 PF01957 NfeD-like C-terminal, partner-binding BEN31_04610 PF12127 SigmaW regulon antibacterial BEN31_04620 PF07873 YabP family BEN31_04625 PF06898 Putative stage IV sporulation protein YqfD BEN31_04630 PF02562 PhoH-like protein BEN31_04635 PF07697 7TM-HD extracellular BEN31_04635 PF01966 HD domain BEN31_04635 PF07698 7TM receptor with intracellular HD hydrolase BEN31_04640 PF02130 Uncharacterized protein family UPF0054 BEN31_04645 PF01219 Prokaryotic diacylglycerol kinase BEN31_04650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEN31_04655 PF01926 50S ribosome-binding GTPase BEN31_04655 PF07650 KH domain BEN31_04660 PF14006 YqzL-like protein BEN31_04665 PF11967 Recombination protein O N terminal BEN31_04665 PF02565 Recombination protein O C terminal BEN31_04670 PF02091 Glycyl-tRNA synthetase alpha subunit BEN31_04675 PF02092 Glycyl-tRNA synthetase beta subunit BEN31_04680 PF00571 CBS domain BEN31_04680 PF08279 HTH domain BEN31_04685 PF03618 Kinase/pyrophosphorylase BEN31_04690 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BEN31_04695 PF01807 CHC2 zinc finger BEN31_04695 PF08275 DNA primase catalytic core, N-terminal domain BEN31_04695 PF10410 DnaB-helicase binding domain of primase BEN31_04700 PF04545 Sigma-70, region 4 BEN31_04700 PF04539 Sigma-70 region 3 BEN31_04700 PF04542 Sigma-70 region 2 BEN31_04700 PF00140 Sigma-70 factor, region 1.2 BEN31_04700 PF03979 Sigma-70 factor, region 1.1 BEN31_04705 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BEN31_04710 PF04816 tRNA (adenine(22)-N(1))-methyltransferase BEN31_04715 PF01784 NIF3 (NGG1p interacting factor 3) BEN31_04720 PF02401 LytB protein BEN31_04730 PF00270 DEAD/DEAH box helicase BEN31_04730 PF00271 Helicase conserved C-terminal domain BEN31_04735 PF01261 Xylose isomerase-like TIM barrel BEN31_04740 PF11116 Protein of unknown function (DUF2624) BEN31_04745 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BEN31_04745 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEN31_04750 PF00005 ABC transporter BEN31_04755 PF00950 ABC 3 transport family BEN31_04760 PF01475 Ferric uptake regulator family BEN31_04765 PF00480 ROK family BEN31_04780 PF04551 GcpE protein BEN31_04790 PF13302 Acetyltransferase (GNAT) domain BEN31_04795 PF06691 Protein of unknown function (DUF1189) BEN31_04800 PF04306 Protein of unknown function (DUF456) BEN31_04805 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BEN31_04805 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BEN31_04810 PF07690 Major Facilitator Superfamily BEN31_04820 PF12849 PBP superfamily domain BEN31_04825 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_04830 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_04835 PF00005 ABC transporter BEN31_04840 PF00005 ABC transporter BEN31_04855 PF00471 Ribosomal protein L33 BEN31_04860 PF01812 5-formyltetrahydrofolate cyclo-ligase family BEN31_04865 PF01694 Rhomboid family BEN31_04870 PF06014 Bacterial protein of unknown function (DUF910) BEN31_04875 PF00480 ROK family BEN31_04880 PF00884 Sulfatase BEN31_04885 PF00246 Zinc carboxypeptidase BEN31_04890 PF07690 Major Facilitator Superfamily BEN31_04895 PF01910 Thiamine-binding protein BEN31_04900 PF10958 Protein of unknown function (DUF2759) BEN31_04905 PF00753 Metallo-beta-lactamase superfamily BEN31_04910 PF11117 Protein of unknown function (DUF2626) BEN31_04915 PF03960 ArsC family BEN31_04925 PF01740 STAS domain BEN31_04925 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BEN31_04935 PF00437 Type II/IV secretion system protein BEN31_04940 PF00482 Type II secretion system (T2SS), protein F BEN31_04945 PF07963 Prokaryotic N-terminal methylation motif BEN31_04950 PF07963 Prokaryotic N-terminal methylation motif BEN31_04970 PF14038 YqzE-like protein BEN31_04975 PF13028 Protein of unknown function (DUF3889) BEN31_04990 PF12389 Camelysin metallo-endopeptidase BEN31_04995 PF08671 Anti-repressor SinI BEN31_04995 PF01381 Helix-turn-helix BEN31_05000 PF11079 Bacterial protein YqhG of unknown function BEN31_05005 PF00271 Helicase conserved C-terminal domain BEN31_05005 PF00176 SNF2 family N-terminal domain BEN31_05010 PF01571 Aminomethyltransferase folate-binding domain BEN31_05010 PF08669 Glycine cleavage T-protein C-terminal barrel domain BEN31_05015 PF02347 Glycine cleavage system P-protein BEN31_05020 PF02347 Glycine cleavage system P-protein BEN31_05025 PF00581 Rhodanese-like domain BEN31_05030 PF03099 Biotin/lipoate A/B protein ligase family BEN31_05035 PF01325 Iron dependent repressor, N-terminal DNA binding domain BEN31_05035 PF02742 Iron dependent repressor, metal binding and dimerisation domain BEN31_05040 PF01734 Patatin-like phospholipase BEN31_05050 PF07136 Protein of unknown function (DUF1385) BEN31_05055 PF11085 Conserved membrane protein YqhR BEN31_05060 PF01220 Dehydroquinase class II BEN31_05065 PF00557 Metallopeptidase family M24 BEN31_05065 PF01321 Creatinase/Prolidase N-terminal domain BEN31_05070 PF09285 Elongation factor P, C-terminal BEN31_05070 PF08207 Elongation factor P (EF-P) KOW-like domain BEN31_05070 PF01132 Elongation factor P (EF-P) OB domain BEN31_05075 PF10942 Protein of unknown function (DUF2619) BEN31_05085 PF09548 Stage III sporulation protein AB (spore_III_AB) BEN31_05090 PF06686 Stage III sporulation protein AC/AD protein family BEN31_05095 PF06686 Stage III sporulation protein AC/AD protein family BEN31_05100 PF09546 Stage III sporulation protein AE (spore_III_AE) BEN31_05105 PF09581 Stage III sporulation protein AF (Spore_III_AF) BEN31_05115 PF12685 SpoIIIAH-like protein BEN31_05120 PF00364 Biotin-requiring enzyme BEN31_05125 PF02785 Biotin carboxylase C-terminal domain BEN31_05125 PF00289 Biotin carboxylase, N-terminal domain BEN31_05125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEN31_05130 PF03780 Asp23 family, cell envelope-related function BEN31_05135 PF01029 NusB family BEN31_05140 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BEN31_05140 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BEN31_05145 PF13742 OB-fold nucleic acid binding domain BEN31_05145 PF02601 Exonuclease VII, large subunit BEN31_05150 PF02609 Exonuclease VII small subunit BEN31_05155 PF00348 Polyprenyl synthetase BEN31_05160 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BEN31_05160 PF02779 Transketolase, pyrimidine binding domain BEN31_05160 PF02780 Transketolase, C-terminal domain BEN31_05165 PF01479 S4 domain BEN31_05165 PF01728 FtsJ-like methyltransferase BEN31_05170 PF01316 Arginine repressor, DNA binding domain BEN31_05170 PF02863 Arginine repressor, C-terminal domain BEN31_05175 PF13476 AAA domain BEN31_05180 PF17820 PDZ domain BEN31_05180 PF05580 SpoIVB peptidase S55 BEN31_05185 PF08769 Sporulation initiation factor Spo0A C terminal BEN31_05185 PF00072 Response regulator receiver domain BEN31_05195 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_05200 PF03009 Glycerophosphoryl diester phosphodiesterase family BEN31_05205 PF11118 Protein of unknown function (DUF2627) BEN31_05210 PF02954 Bacterial regulatory protein, Fis family BEN31_05210 PF00158 Sigma-54 interaction domain BEN31_05210 PF00989 PAS fold BEN31_05215 PF01515 Phosphate acetyl/butaryl transferase BEN31_05220 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEN31_05220 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BEN31_05225 PF00871 Acetokinase family BEN31_05230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN31_05230 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_05235 PF00676 Dehydrogenase E1 component BEN31_05240 PF02780 Transketolase, C-terminal domain BEN31_05240 PF02779 Transketolase, pyrimidine binding domain BEN31_05245 PF02817 e3 binding domain BEN31_05245 PF00364 Biotin-requiring enzyme BEN31_05245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BEN31_05255 PF00781 Diacylglycerol kinase catalytic domain BEN31_05260 PF06491 Disulphide isomerase BEN31_05265 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_05270 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_05275 PF00005 ABC transporter BEN31_05280 PF11728 Putative aromatic acid exporter C-terminal domain BEN31_05280 PF06081 Aromatic acid exporter family member 1 BEN31_05285 PF03734 L,D-transpeptidase catalytic domain BEN31_05295 PF01039 Carboxyl transferase domain BEN31_05300 PF01546 Peptidase family M20/M25/M40 BEN31_05300 PF07687 Peptidase dimerisation domain BEN31_05310 PF02096 60Kd inner membrane protein BEN31_05320 PF11799 impB/mucB/samB family C-terminal domain BEN31_05320 PF11798 IMS family HHH motif BEN31_05320 PF00817 impB/mucB/samB family BEN31_05325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEN31_05325 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BEN31_05330 PF06800 Sugar transport protein BEN31_05340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_05345 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BEN31_05350 PF02378 Phosphotransferase system, EIIC BEN31_05355 PF00232 Glycosyl hydrolase family 1 BEN31_05360 PF07702 UTRA domain BEN31_05360 PF00392 Bacterial regulatory proteins, gntR family BEN31_05365 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BEN31_05365 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BEN31_05370 PF12706 Beta-lactamase superfamily domain BEN31_05375 PF12897 Alanine-glyoxylate amino-transferase BEN31_05380 PF12146 Serine aminopeptidase, S33 BEN31_05385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BEN31_05390 PF01546 Peptidase family M20/M25/M40 BEN31_05400 PF03807 NADP oxidoreductase coenzyme F420-dependent BEN31_05400 PF14748 Pyrroline-5-carboxylate reductase dimerisation BEN31_05405 PF00753 Metallo-beta-lactamase superfamily BEN31_05410 PF00106 short chain dehydrogenase BEN31_05415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN31_05415 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_05420 PF00485 Phosphoribulokinase / Uridine kinase family BEN31_05425 PF07690 Major Facilitator Superfamily BEN31_05430 PF08863 YolD-like protein BEN31_05435 PF00817 impB/mucB/samB family BEN31_05435 PF11799 impB/mucB/samB family C-terminal domain BEN31_05440 PF10787 Uncharacterised protein from bacillus cereus group BEN31_05445 PF00583 Acetyltransferase (GNAT) family BEN31_05450 PF04229 GrpB protein BEN31_05450 PF13673 Acetyltransferase (GNAT) domain BEN31_05455 PF03330 Lytic transglycolase BEN31_05460 PF01521 Iron-sulphur cluster biosynthesis BEN31_05465 PF10827 Protein of unknown function (DUF2552) BEN31_05470 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_05475 PF12146 Serine aminopeptidase, S33 BEN31_05490 PF00248 Aldo/keto reductase family BEN31_05495 PF00293 NUDIX domain BEN31_05515 PF00082 Subtilase family BEN31_05515 PF05922 Peptidase inhibitor I9 BEN31_05520 PF01944 Stage II sporulation protein M BEN31_05525 PF01475 Ferric uptake regulator family BEN31_05530 PF14004 Protein of unknown function (DUF4227) BEN31_05535 PF00589 Phage integrase family BEN31_05535 PF02899 Phage integrase, N-terminal SAM-like domain BEN31_05540 PF01676 Metalloenzyme superfamily BEN31_05545 PF01048 Phosphorylase superfamily BEN31_05550 PF07943 Penicillin-binding protein 5, C-terminal domain BEN31_05550 PF00768 D-alanyl-D-alanine carboxypeptidase BEN31_05555 PF01740 STAS domain BEN31_05560 PF13581 Histidine kinase-like ATPase domain BEN31_05565 PF04539 Sigma-70 region 3 BEN31_05565 PF04542 Sigma-70 region 2 BEN31_05565 PF04545 Sigma-70, region 4 BEN31_05570 PF12164 Stage V sporulation protein AA BEN31_05575 PF13782 Stage V sporulation protein AB BEN31_05580 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BEN31_05585 PF07451 Stage V sporulation protein AD (SpoVAD) BEN31_05590 PF03862 SpoVAC/SpoVAEB sporulation membrane protein BEN31_05595 PF14097 Stage V sporulation protein AE1 BEN31_05600 PF03323 Bacillus/Clostridium GerA spore germination protein BEN31_05605 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BEN31_05605 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BEN31_05610 PF06207 Protein of unknown function (DUF1002) BEN31_05615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BEN31_05620 PF07690 Major Facilitator Superfamily BEN31_05640 PF00677 Lumazine binding domain BEN31_05650 PF00885 6,7-dimethyl-8-ribityllumazine synthase BEN31_05655 PF00583 Acetyltransferase (GNAT) family BEN31_05660 PF03745 Domain of unknown function (DUF309) BEN31_05665 PF02616 Segregation and condensation protein ScpA BEN31_05670 PF04079 Segregation and condensation complex subunit ScpB BEN31_05675 PF13047 Protein of unknown function (DUF3907) BEN31_05680 PF07943 Penicillin-binding protein 5, C-terminal domain BEN31_05680 PF00768 D-alanyl-D-alanine carboxypeptidase BEN31_05685 PF07670 Nucleoside recognition BEN31_05690 PF07670 Nucleoside recognition BEN31_05695 PF00849 RNA pseudouridylate synthase BEN31_05695 PF01479 S4 domain BEN31_05700 PF00578 AhpC/TSA family BEN31_05705 PF05140 ResB-like family BEN31_05710 PF01578 Cytochrome C assembly protein BEN31_05715 PF00072 Response regulator receiver domain BEN31_05715 PF00486 Transcriptional regulatory protein, C terminal BEN31_05720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_05720 PF18698 Histidine kinase sensor domain BEN31_05720 PF00512 His Kinase A (phospho-acceptor) domain BEN31_05720 PF00989 PAS fold BEN31_05720 PF00672 HAMP domain BEN31_05725 PF08281 Sigma-70, region 4 BEN31_05725 PF04542 Sigma-70 region 2 BEN31_05735 PF01471 Putative peptidoglycan binding domain BEN31_05735 PF01476 LysM domain BEN31_05735 PF01510 N-acetylmuramoyl-L-alanine amidase BEN31_05740 PF01842 ACT domain BEN31_05740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN31_05740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN31_05745 PF12822 ECF transporter, substrate-specific component BEN31_05755 PF14493 Helix-turn-helix domain BEN31_05760 PF00270 DEAD/DEAH box helicase BEN31_05760 PF00271 Helicase conserved C-terminal domain BEN31_05765 PF02517 CPBP intramembrane metalloprotease BEN31_05770 PF01476 LysM domain BEN31_05775 PF10864 Protein of unknown function (DUF2663) BEN31_05780 PF00149 Calcineurin-like phosphoesterase BEN31_05785 PF05389 Negative regulator of genetic competence (MecA) BEN31_05790 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BEN31_05790 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEN31_05800 PF13367 PrsW family intramembrane metalloprotease BEN31_05805 PF07486 Cell Wall Hydrolase BEN31_05805 PF01471 Putative peptidoglycan binding domain BEN31_05810 PF14620 YpeB sporulation BEN31_05810 PF03413 Peptidase propeptide and YPEB domain BEN31_05815 PF07238 PilZ domain BEN31_05815 PF12945 Flagellar protein YcgR BEN31_05820 PF17313 Family of unknown function (DUF5359) BEN31_05825 PF02224 Cytidylate kinase BEN31_05830 PF00575 S1 RNA binding domain BEN31_05835 PF01070 FMN-dependent dehydrogenase BEN31_05840 PF14140 YpzI-like protein BEN31_05850 PF14045 YIEGIA protein BEN31_05860 PF01926 50S ribosome-binding GTPase BEN31_05860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BEN31_05865 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BEN31_05865 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BEN31_05870 PF10966 Protein of unknown function (DUF2768) BEN31_05880 PF09547 Stage IV sporulation protein A (spore_IV_A) BEN31_05885 PF00216 Bacterial DNA-binding protein BEN31_05890 PF01227 GTP cyclohydrolase I BEN31_05895 PF02081 Tryptophan RNA-binding attenuator protein BEN31_05900 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 BEN31_05905 PF01209 ubiE/COQ5 methyltransferase family BEN31_05910 PF00348 Polyprenyl synthetase BEN31_05915 PF00334 Nucleoside diphosphate kinase BEN31_05920 PF01739 CheR methyltransferase, SAM binding domain BEN31_05920 PF03705 CheR methyltransferase, all-alpha domain BEN31_05925 PF01264 Chorismate synthase BEN31_05930 PF01761 3-dehydroquinate synthase BEN31_05935 PF07736 Chorismate mutase type I BEN31_05940 PF04715 Anthranilate synthase component I, N terminal region BEN31_05940 PF00425 chorismate binding enzyme BEN31_05945 PF02885 Glycosyl transferase family, helical bundle domain BEN31_05945 PF00591 Glycosyl transferase family, a/b domain BEN31_05950 PF00218 Indole-3-glycerol phosphate synthase BEN31_05955 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BEN31_05960 PF00291 Pyridoxal-phosphate dependent enzyme BEN31_05965 PF00290 Tryptophan synthase alpha chain BEN31_05970 PF00155 Aminotransferase class I and II BEN31_05975 PF02153 Prephenate dehydrogenase BEN31_05975 PF01842 ACT domain BEN31_05980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BEN31_05990 PF08858 IDEAL domain BEN31_05990 PF08864 UPF0302 domain BEN31_05995 PF10673 Protein of unknown function (DUF2487) BEN31_06000 PF00355 Rieske [2Fe-2S] domain BEN31_06005 PF00033 Cytochrome b/b6/petB BEN31_06010 PF00032 Cytochrome b(C-terminal)/b6/petD BEN31_06010 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BEN31_06015 PF07187 Protein of unknown function (DUF1405) BEN31_06020 PF09577 Sporulation protein YpjB (SpoYpjB) BEN31_06025 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BEN31_06025 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEN31_06030 PF03819 MazG nucleotide pyrophosphohydrolase domain BEN31_06035 PF01113 Dihydrodipicolinate reductase, N-terminus BEN31_06035 PF05173 Dihydrodipicolinate reductase, C-terminus BEN31_06040 PF02142 MGS-like domain BEN31_06045 PF02585 GlcNAc-PI de-N-acetylase BEN31_06050 PF00534 Glycosyl transferases group 1 BEN31_06050 PF13439 Glycosyltransferase Family 4 BEN31_06055 PF12627 Probable RNA and SrmB- binding site of polymerase A BEN31_06055 PF13735 tRNA nucleotidyltransferase domain 2 putative BEN31_06055 PF01743 Poly A polymerase head domain BEN31_06060 PF02237 Biotin protein ligase C terminal domain BEN31_06060 PF03099 Biotin/lipoate A/B protein ligase family BEN31_06060 PF08279 HTH domain BEN31_06065 PF02548 Ketopantoate hydroxymethyltransferase BEN31_06070 PF02569 Pantoate-beta-alanine ligase BEN31_06075 PF02261 Aspartate decarboxylase BEN31_06080 PF00929 Exonuclease BEN31_06080 PF04851 Type III restriction enzyme, res subunit BEN31_06080 PF13307 Helicase C-terminal domain BEN31_06085 PF14084 Protein of unknown function (DUF4264) BEN31_06090 PF17881 Domain of unknown function (DUF5590) BEN31_06090 PF03413 Peptidase propeptide and YPEB domain BEN31_06095 PF01336 OB-fold nucleic acid binding domain BEN31_06095 PF00152 tRNA synthetases class II (D, K and N) BEN31_06100 PF07261 Replication initiation and membrane attachment BEN31_06105 PF00633 Helix-hairpin-helix motif BEN31_06105 PF00730 HhH-GPD superfamily base excision DNA repair protein BEN31_06105 PF10576 Iron-sulfur binding domain of endonuclease III BEN31_06115 PF00905 Penicillin binding protein transpeptidase domain BEN31_06115 PF00912 Transglycosylase BEN31_06120 PF03838 Recombination protein U BEN31_06125 PF10720 Protein of unknown function (DUF2515) BEN31_06140 PF08807 Bacterial domain of unknown function (DUF1798) BEN31_06145 PF14179 YppG-like protein BEN31_06155 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN31_06160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BEN31_06165 PF09369 Domain of unknown function (DUF1998) BEN31_06165 PF00270 DEAD/DEAH box helicase BEN31_06165 PF00271 Helicase conserved C-terminal domain BEN31_06170 PF13482 RNase_H superfamily BEN31_06175 PF06908 YspA SLOG family BEN31_06180 PF05103 DivIVA protein BEN31_06190 PF01170 Putative RNA methylase family UPF0020 BEN31_06190 PF02926 THUMP domain BEN31_06200 PF13307 Helicase C-terminal domain BEN31_06205 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BEN31_06215 PF00860 Permease family BEN31_06220 PF02797 Chalcone and stilbene synthases, C-terminal domain BEN31_06220 PF00195 Chalcone and stilbene synthases, N-terminal domain BEN31_06225 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family BEN31_06230 PF00350 Dynamin family BEN31_06235 PF10752 Protein of unknown function (DUF2533) BEN31_06240 PF01367 5'-3' exonuclease, C-terminal SAM fold BEN31_06240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BEN31_06250 PF13456 Reverse transcriptase-like BEN31_06255 PF02592 Putative vitamin uptake transporter BEN31_06260 PF13456 Reverse transcriptase-like BEN31_06265 PF10782 Zinc-finger BEN31_06275 PF00313 'Cold-shock' DNA-binding domain BEN31_06285 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase BEN31_06285 PF00534 Glycosyl transferases group 1 BEN31_06290 PF04204 Homoserine O-succinyltransferase BEN31_06295 PF01268 Formate--tetrahydrofolate ligase BEN31_06300 PF00255 Glutathione peroxidase BEN31_06305 PF01966 HD domain BEN31_06310 PF13769 Virulence factor BEN31_06310 PF08712 Scaffold protein Nfu/NifU N terminal BEN31_06315 PF00920 Dehydratase family BEN31_06320 PF06491 Disulphide isomerase BEN31_06325 PF04445 Putative SAM-dependent methyltransferase BEN31_06330 PF14005 YpjP-like protein BEN31_06335 PF04608 Phosphatidylglycerophosphatase A BEN31_06340 PF00303 Thymidylate synthase BEN31_06345 PF00186 Dihydrofolate reductase BEN31_06355 PF03006 Haemolysin-III related BEN31_06360 PF00158 Sigma-54 interaction domain BEN31_06360 PF08461 Ribonuclease R winged-helix domain BEN31_06365 PF00585 C-terminal regulatory domain of Threonine dehydratase BEN31_06365 PF00291 Pyridoxal-phosphate dependent enzyme BEN31_06370 PF10751 Protein of unknown function (DUF2535) BEN31_06375 PF02645 Uncharacterised protein, DegV family COG1307 BEN31_06380 PF02630 SCO1/SenC BEN31_06385 PF13472 GDSL-like Lipase/Acylhydrolase family BEN31_06390 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) BEN31_06395 PF17431 Uncharacterized YmpT-like BEN31_06410 PF01047 MarR family BEN31_06415 PF01625 Peptide methionine sulfoxide reductase BEN31_06420 PF01641 SelR domain BEN31_06425 PF02719 Polysaccharide biosynthesis protein BEN31_06435 PF12996 DUF based on E. rectale Gene description (DUF3880) BEN31_06450 PF00535 Glycosyl transferase family 2 BEN31_06455 PF02954 Bacterial regulatory protein, Fis family BEN31_06455 PF13426 PAS domain BEN31_06455 PF00158 Sigma-54 interaction domain BEN31_06460 PF12544 Lysine-2,3-aminomutase BEN31_06465 PF14122 YokU-like protein, putative antitoxin BEN31_06470 PF06855 YozE SAM-like fold BEN31_06480 PF14162 YozD-like protein BEN31_06485 PF01569 PAP2 superfamily BEN31_06490 PF14191 YodL-like BEN31_06495 PF01048 Phosphorylase superfamily BEN31_06500 PF02557 D-alanyl-D-alanine carboxypeptidase BEN31_06510 PF08241 Methyltransferase domain BEN31_06515 PF03572 Peptidase family S41 BEN31_06515 PF17820 PDZ domain BEN31_06515 PF01471 Putative peptidoglycan binding domain BEN31_06520 PF00474 Sodium:solute symporter family BEN31_06525 PF11755 Protein of unknown function (DUF3311) BEN31_06530 PF00881 Nitroreductase family BEN31_06535 PF01638 HxlR-like helix-turn-helix BEN31_06550 PF00892 EamA-like transporter family BEN31_06560 PF08830 Protein of unknown function (DUF1806) BEN31_06565 PF02585 GlcNAc-PI de-N-acetylase BEN31_06570 PF01554 MatE BEN31_06575 PF02457 DisA bacterial checkpoint controller nucleotide-binding BEN31_06575 PF10372 Bacterial membrane-spanning protein N-terminus BEN31_06580 PF01476 LysM domain BEN31_06580 PF00877 NlpC/P60 family BEN31_06585 PF13627 Prokaryotic lipoprotein-attachment site BEN31_06585 PF00080 Copper/zinc superoxide dismutase (SODC) BEN31_06590 PF07728 AAA domain (dynein-related subfamily) BEN31_06595 PF00092 von Willebrand factor type A domain BEN31_06600 PF16870 2-oxoglutarate dehydrogenase C-terminal BEN31_06600 PF00676 Dehydrogenase E1 component BEN31_06600 PF16078 2-oxoglutarate dehydrogenase N-terminus BEN31_06600 PF02779 Transketolase, pyrimidine binding domain BEN31_06605 PF00364 Biotin-requiring enzyme BEN31_06605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BEN31_06605 PF02817 e3 binding domain BEN31_06610 PF01758 Sodium Bile acid symporter family BEN31_06615 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BEN31_06615 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BEN31_06620 PF13249 Squalene-hopene cyclase N-terminal domain BEN31_06620 PF13243 Squalene-hopene cyclase C-terminal domain BEN31_06625 PF00171 Aldehyde dehydrogenase family BEN31_06635 PF08000 Bacterial PH domain BEN31_06645 PF01258 Prokaryotic dksA/traR C4-type zinc finger BEN31_06655 PF00271 Helicase conserved C-terminal domain BEN31_06655 PF16124 RecQ zinc-binding BEN31_06655 PF00570 HRDC domain BEN31_06655 PF09382 RQC domain BEN31_06655 PF00270 DEAD/DEAH box helicase BEN31_06660 PF01476 LysM domain BEN31_06660 PF06725 3D domain BEN31_06670 PF04238 Protein of unknown function (DUF420) BEN31_06675 PF00285 Citrate synthase, C-terminal domain BEN31_06680 PF03972 MmgE/PrpD family BEN31_06695 PF00324 Amino acid permease BEN31_06700 PF01022 Bacterial regulatory protein, arsR family BEN31_06710 PF08279 HTH domain BEN31_06710 PF13280 WYL domain BEN31_06715 PF06445 GyrI-like small molecule binding domain BEN31_06725 PF13761 Domain of unknown function (DUF4166) BEN31_06740 PF01588 Putative tRNA binding domain BEN31_06750 PF04616 Glycosyl hydrolases family 43 BEN31_06750 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain BEN31_06755 PF00480 ROK family BEN31_06760 PF01261 Xylose isomerase-like TIM barrel BEN31_06765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN31_06765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN31_06770 PF00457 Glycosyl hydrolases family 11 BEN31_06775 PF00384 Molybdopterin oxidoreductase BEN31_06775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BEN31_06775 PF01568 Molydopterin dinucleotide binding domain BEN31_06780 PF00067 Cytochrome P450 BEN31_06785 PF14748 Pyrroline-5-carboxylate reductase dimerisation BEN31_06785 PF03807 NADP oxidoreductase coenzyme F420-dependent BEN31_06790 PF01472 PUA domain BEN31_06790 PF00696 Amino acid kinase family BEN31_06795 PF00171 Aldehyde dehydrogenase family BEN31_06800 PF00583 Acetyltransferase (GNAT) family BEN31_06810 PF00664 ABC transporter transmembrane region BEN31_06810 PF00005 ABC transporter BEN31_06815 PF00664 ABC transporter transmembrane region BEN31_06815 PF00005 ABC transporter BEN31_06820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_06820 PF03466 LysR substrate binding domain BEN31_06825 PF01645 Conserved region in glutamate synthase BEN31_06825 PF00310 Glutamine amidotransferases class-II BEN31_06825 PF04898 Glutamate synthase central domain BEN31_06825 PF01493 GXGXG motif BEN31_06830 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEN31_06830 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_06835 PF07690 Major Facilitator Superfamily BEN31_06840 PF18267 Rubredoxin NAD+ reductase C-terminal domain BEN31_06840 PF04324 BFD-like [2Fe-2S] binding domain BEN31_06840 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_06840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BEN31_06845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BEN31_06845 PF00384 Molybdopterin oxidoreductase BEN31_06845 PF01568 Molydopterin dinucleotide binding domain BEN31_06850 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_06850 PF04324 BFD-like [2Fe-2S] binding domain BEN31_06850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BEN31_06850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BEN31_06850 PF18267 Rubredoxin NAD+ reductase C-terminal domain BEN31_06855 PF00355 Rieske [2Fe-2S] domain BEN31_06860 PF04239 Protein of unknown function (DUF421) BEN31_06865 PF01095 Pectinesterase BEN31_06870 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BEN31_06875 PF01554 MatE BEN31_06900 PF00296 Luciferase-like monooxygenase BEN31_06910 PF02602 Uroporphyrinogen-III synthase HemD BEN31_06915 PF09335 SNARE associated Golgi protein BEN31_06925 PF12728 Helix-turn-helix domain BEN31_06940 PF03845 Spore germination protein BEN31_06945 PF03323 Bacillus/Clostridium GerA spore germination protein BEN31_06950 PF13183 4Fe-4S dicluster domain BEN31_06950 PF02754 Cysteine-rich domain BEN31_06955 PF01565 FAD binding domain BEN31_06955 PF02913 FAD linked oxidases, C-terminal domain BEN31_06960 PF05651 Putative sugar diacid recognition BEN31_06960 PF13556 PucR C-terminal helix-turn-helix domain BEN31_06960 PF17853 GGDEF-like domain BEN31_06970 PF08220 DeoR-like helix-turn-helix domain BEN31_06970 PF00455 DeoR C terminal sensor domain BEN31_06980 PF02638 Glycosyl hydrolase-like 10 BEN31_06985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN31_06985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN31_06985 PF02770 Acyl-CoA dehydrogenase, middle domain BEN31_06990 PF00501 AMP-binding enzyme BEN31_06990 PF13193 AMP-binding enzyme C-terminal domain BEN31_06995 PF00289 Biotin carboxylase, N-terminal domain BEN31_06995 PF02785 Biotin carboxylase C-terminal domain BEN31_06995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEN31_07000 PF00364 Biotin-requiring enzyme BEN31_07005 PF00682 HMGL-like BEN31_07010 PF00378 Enoyl-CoA hydratase/isomerase BEN31_07015 PF01039 Carboxyl transferase domain BEN31_07020 PF16177 Acetyl-coenzyme A synthetase N-terminus BEN31_07020 PF00501 AMP-binding enzyme BEN31_07020 PF13193 AMP-binding enzyme C-terminal domain BEN31_07025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BEN31_07025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BEN31_07030 PF00667 FAD binding domain BEN31_07030 PF00258 Flavodoxin BEN31_07030 PF00175 Oxidoreductase NAD-binding domain BEN31_07040 PF00171 Aldehyde dehydrogenase family BEN31_07060 PF13091 PLD-like domain BEN31_07065 PF01418 Helix-turn-helix domain, rpiR family BEN31_07065 PF01380 SIS domain BEN31_07070 PF00294 pfkB family carbohydrate kinase BEN31_07075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_07075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_07080 PF02378 Phosphotransferase system, EIIC BEN31_07080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_07080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_07085 PF01116 Fructose-bisphosphate aldolase class-II BEN31_07090 PF07690 Major Facilitator Superfamily BEN31_07095 PF01047 MarR family BEN31_07100 PF04740 LXG domain of WXG superfamily BEN31_07100 PF14449 Pre-toxin TG BEN31_07100 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues BEN31_07115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_07130 PF00834 Ribulose-phosphate 3 epimerase family BEN31_07155 PF11975 Family 4 glycosyl hydrolase C-terminal domain BEN31_07155 PF02056 Family 4 glycosyl hydrolase BEN31_07160 PF00171 Aldehyde dehydrogenase family BEN31_07165 PF03422 Carbohydrate binding module (family 6) BEN31_07165 PF04616 Glycosyl hydrolases family 43 BEN31_07170 PF17189 Glycosyl hydrolase family 30 beta sandwich domain BEN31_07170 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain BEN31_07175 PF00072 Response regulator receiver domain BEN31_07175 PF00486 Transcriptional regulatory protein, C terminal BEN31_07180 PF00512 His Kinase A (phospho-acceptor) domain BEN31_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_07195 PF00934 PE family BEN31_07195 PF07859 alpha/beta hydrolase fold BEN31_07210 PF02386 Cation transport protein BEN31_07220 PF01494 FAD binding domain BEN31_07225 PF00440 Bacterial regulatory proteins, tetR family BEN31_07235 PF01042 Endoribonuclease L-PSP BEN31_07240 PF00291 Pyridoxal-phosphate dependent enzyme BEN31_07245 PF01022 Bacterial regulatory protein, arsR family BEN31_07250 PF02040 Arsenical pump membrane protein BEN31_07255 PF01451 Low molecular weight phosphotyrosine protein phosphatase BEN31_07275 PF03466 LysR substrate binding domain BEN31_07275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_07280 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_07280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BEN31_07285 PF01638 HxlR-like helix-turn-helix BEN31_07305 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN31_07310 PF07690 Major Facilitator Superfamily BEN31_07320 PF03989 DNA gyrase C-terminal domain, beta-propeller BEN31_07320 PF00521 DNA gyrase/topoisomerase IV, subunit A BEN31_07325 PF01751 Toprim domain BEN31_07325 PF00986 DNA gyrase B subunit, carboxyl terminus BEN31_07325 PF00204 DNA gyrase B BEN31_07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_07335 PF13380 CoA binding domain BEN31_07340 PF02660 Glycerol-3-phosphate acyltransferase BEN31_07345 PF01521 Iron-sulphur cluster biosynthesis BEN31_07355 PF03061 Thioesterase superfamily BEN31_07365 PF08177 Small acid-soluble spore protein N family BEN31_07370 PF13040 Fur-regulated basic protein B BEN31_07375 PF00578 AhpC/TSA family BEN31_07380 PF00330 Aconitase family (aconitate hydratase) BEN31_07380 PF00694 Aconitase C-terminal domain BEN31_07390 PF08179 Small acid-soluble spore protein P family BEN31_07400 PF11084 Protein of unknown function (DUF2621) BEN31_07405 PF07301 Protein of unknown function (DUF1453) BEN31_07410 PF02683 Cytochrome C biogenesis protein transmembrane region BEN31_07415 PF09388 Spo0E like sporulation regulatory protein BEN31_07420 PF03672 Uncharacterised protein family (UPF0154) BEN31_07425 PF10747 Sporulation inhibitor of replication protein SirA BEN31_07430 PF00456 Transketolase, thiamine diphosphate binding domain BEN31_07430 PF02780 Transketolase, C-terminal domain BEN31_07430 PF02779 Transketolase, pyrimidine binding domain BEN31_07435 PF05979 Bacterial protein of unknown function (DUF896) BEN31_07440 PF00239 Resolvase, N terminal domain BEN31_07445 PF01476 LysM domain BEN31_07450 PF00717 Peptidase S24-like BEN31_07450 PF01726 LexA DNA binding domain BEN31_07460 PF16800 IseA DL-endopeptidase inhibitor BEN31_07465 PF01740 STAS domain BEN31_07470 PF14040 Deoxyribonuclease NucA/NucB BEN31_07475 PF00089 Trypsin BEN31_07480 PF00258 Flavodoxin BEN31_07480 PF00667 FAD binding domain BEN31_07480 PF00175 Oxidoreductase NAD-binding domain BEN31_07480 PF00067 Cytochrome P450 BEN31_07485 PF00440 Bacterial regulatory proteins, tetR family BEN31_07485 PF16295 Tetracyclin repressor-like, C-terminal domain BEN31_07505 PF02589 LUD domain BEN31_07510 PF13183 4Fe-4S dicluster domain BEN31_07510 PF11870 Domain of unknown function (DUF3390) BEN31_07510 PF02589 LUD domain BEN31_07515 PF02754 Cysteine-rich domain BEN31_07520 PF05368 NmrA-like family BEN31_07525 PF02082 Transcriptional regulator BEN31_07535 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) BEN31_07540 PF02735 Ku70/Ku80 beta-barrel domain BEN31_07545 PF01068 ATP dependent DNA ligase domain BEN31_07550 PF06912 Protein of unknown function (DUF1275) BEN31_07560 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_07570 PF08818 Domain of unknown function (DU1801) BEN31_07575 PF01569 PAP2 superfamily BEN31_07595 PF04740 LXG domain of WXG superfamily BEN31_07600 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_07605 PF00120 Glutamine synthetase, catalytic domain BEN31_07605 PF03951 Glutamine synthetase, beta-Grasp domain BEN31_07610 PF13411 MerR HTH family regulatory protein BEN31_07615 PF06838 Methionine gamma-lyase BEN31_07620 PF13167 GTP-binding GTPase N-terminal BEN31_07620 PF16360 GTP-binding GTPase Middle Region BEN31_07620 PF01926 50S ribosome-binding GTPase BEN31_07625 PF00004 ATPase family associated with various cellular activities (AAA) BEN31_07625 PF17866 AAA lid domain BEN31_07630 PF01520 N-acetylmuramoyl-L-alanine amidase BEN31_07630 PF05036 Sporulation related domain BEN31_07640 PF00268 Ribonucleotide reductase, small chain BEN31_07645 PF02867 Ribonucleotide reductase, barrel domain BEN31_07645 PF00317 Ribonucleotide reductase, all-alpha domain BEN31_07645 PF08343 Ribonucleotide reductase N-terminal BEN31_07650 PF07972 NrdI Flavodoxin like BEN31_07665 PF17209 Hfq protein BEN31_07675 PF12788 YmaF family BEN31_07690 PF00893 Small Multidrug Resistance protein BEN31_07695 PF00893 Small Multidrug Resistance protein BEN31_07700 PF02566 OsmC-like protein BEN31_07705 PF05908 Poly-gamma-glutamate hydrolase BEN31_07710 PF00082 Subtilase family BEN31_07715 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_07720 PF05908 Poly-gamma-glutamate hydrolase BEN31_07725 PF02559 CarD-like/TRCF domain BEN31_07740 PF17735 Biofilm surface layer A BEN31_07745 PF08676 MutL C terminal dimerisation domain BEN31_07745 PF01119 DNA mismatch repair protein, C-terminal domain BEN31_07750 PF05188 MutS domain II BEN31_07750 PF00488 MutS domain V BEN31_07750 PF05190 MutS family domain IV BEN31_07750 PF05192 MutS domain III BEN31_07750 PF01624 MutS domain I BEN31_07755 PF10628 Outer spore coat protein E (CotE) BEN31_07760 PF06133 Control of competence regulator ComK, YlbF/YmcA BEN31_07765 PF01938 TRAM domain BEN31_07765 PF00919 Uncharacterized protein family UPF0004 BEN31_07765 PF04055 Radical SAM superfamily BEN31_07770 PF00155 Aminotransferase class I and II BEN31_07775 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_07775 PF00107 Zinc-binding dehydrogenase BEN31_07780 PF00873 AcrB/AcrD/AcrF family BEN31_07785 PF04232 Stage V sporulation protein S (SpoVS) BEN31_07790 PF13277 YmdB-like protein BEN31_07795 PF12072 Domain of unknown function (DUF3552) BEN31_07795 PF00013 KH domain BEN31_07795 PF01966 HD domain BEN31_07800 PF00154 recA bacterial DNA recombination protein BEN31_07805 PF00994 Probable molybdopterin binding domain BEN31_07805 PF02464 Competence-damaged protein BEN31_07805 PF18146 Damage-inducible protein CinA KH domain BEN31_07810 PF01066 CDP-alcohol phosphatidyltransferase BEN31_07815 PF13464 Domain of unknown function (DUF4115) BEN31_07820 PF11868 Protein of unknown function (DUF3388) BEN31_07825 PF11588 Protein of unknown function (DUF3243) BEN31_07835 PF03176 MMPL family BEN31_07845 PF05193 Peptidase M16 inactive domain BEN31_07845 PF00675 Insulinase (Peptidase family M16) BEN31_07850 PF05193 Peptidase M16 inactive domain BEN31_07855 PF03176 MMPL family BEN31_07860 PF07690 Major Facilitator Superfamily BEN31_07865 PF07702 UTRA domain BEN31_07865 PF00392 Bacterial regulatory proteins, gntR family BEN31_07870 PF01580 FtsK/SpoIIIE family BEN31_07870 PF17854 FtsK alpha domain BEN31_07870 PF09397 Ftsk gamma domain BEN31_07875 PF14035 YlzJ-like protein BEN31_07880 PF00574 Clp protease BEN31_07885 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BEN31_07885 PF17770 Ribonuclease J C-terminal domain BEN31_07885 PF00753 Metallo-beta-lactamase superfamily BEN31_07890 PF00701 Dihydrodipicolinate synthetase family BEN31_07895 PF00696 Amino acid kinase family BEN31_07895 PF13840 ACT domain BEN31_07900 PF02774 Semialdehyde dehydrogenase, dimerisation domain BEN31_07900 PF01118 Semialdehyde dehydrogenase, NAD binding domain BEN31_07905 PF02441 Flavoprotein BEN31_07910 PF16924 Dipicolinate synthase subunit A N-terminal domain BEN31_07910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BEN31_07915 PF05239 PRC-barrel domain BEN31_07925 PF05193 Peptidase M16 inactive domain BEN31_07925 PF00675 Insulinase (Peptidase family M16) BEN31_07930 PF01522 Polysaccharide deacetylase BEN31_07935 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BEN31_07935 PF01138 3' exoribonuclease family, domain 1 BEN31_07935 PF03725 3' exoribonuclease family, domain 2 BEN31_07935 PF00575 S1 RNA binding domain BEN31_07935 PF00013 KH domain BEN31_07940 PF00312 Ribosomal protein S15 BEN31_07945 PF06574 FAD synthetase BEN31_07945 PF01687 Riboflavin kinase BEN31_07950 PF16198 tRNA pseudouridylate synthase B C-terminal domain BEN31_07950 PF01509 TruB family pseudouridylate synthase (N terminal domain) BEN31_07955 PF02033 Ribosome-binding factor A BEN31_07960 PF04456 Protein of unknown function (DUF503) BEN31_07965 PF11987 Translation-initiation factor 2 BEN31_07965 PF04760 Translation initiation factor IF-2, N-terminal region BEN31_07965 PF00009 Elongation factor Tu GTP binding domain BEN31_07970 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BEN31_07975 PF04296 Protein of unknown function (DUF448) BEN31_07980 PF00575 S1 RNA binding domain BEN31_07980 PF08529 NusA N-terminal domain BEN31_07980 PF13184 NusA-like KH domain BEN31_07985 PF02576 RimP N-terminal domain BEN31_07985 PF17384 RimP C-terminal SH3 domain BEN31_08000 PF00942 Cellulose binding domain BEN31_08000 PF02011 Glycosyl hydrolase family 48 BEN31_08000 PF00759 Glycosyl hydrolase family 9 BEN31_08005 PF00759 Glycosyl hydrolase family 9 BEN31_08005 PF00942 Cellulose binding domain BEN31_08010 PF14480 DNA polymerase III polC-type N-terminus I BEN31_08010 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BEN31_08010 PF02811 PHP domain BEN31_08010 PF11490 DNA polymerase III polC-type N-terminus II BEN31_08010 PF14579 Helix-hairpin-helix motif BEN31_08010 PF00929 Exonuclease BEN31_08010 PF07733 Bacterial DNA polymerase III alpha NTPase domain BEN31_08015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN31_08015 PF03129 Anticodon binding domain BEN31_08015 PF04073 Aminoacyl-tRNA editing domain BEN31_08020 PF17820 PDZ domain BEN31_08020 PF02163 Peptidase family M50 BEN31_08025 PF13288 DXP reductoisomerase C-terminal domain BEN31_08025 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BEN31_08025 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BEN31_08035 PF01255 Putative undecaprenyl diphosphate synthase BEN31_08040 PF01765 Ribosome recycling factor BEN31_08045 PF00696 Amino acid kinase family BEN31_08050 PF00889 Elongation factor TS BEN31_08055 PF00318 Ribosomal protein S2 BEN31_08065 PF04545 Sigma-70, region 4 BEN31_08065 PF04542 Sigma-70 region 2 BEN31_08065 PF04539 Sigma-70 region 3 BEN31_08070 PF03975 CheD chemotactic sensory transduction BEN31_08075 PF04509 CheC-like family BEN31_08080 PF01584 CheW-like domain BEN31_08085 PF02895 Signal transducing histidine kinase, homodimeric domain BEN31_08085 PF07194 P2 response regulator binding domain BEN31_08085 PF01627 Hpt domain BEN31_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_08085 PF01584 CheW-like domain BEN31_08090 PF00072 Response regulator receiver domain BEN31_08090 PF01339 CheB methylesterase BEN31_08095 PF10609 NUBPL iron-transfer P-loop NTPase BEN31_08100 PF00448 SRP54-type protein, GTPase domain BEN31_08105 PF00771 FHIPEP family BEN31_08110 PF01312 FlhB HrpN YscU SpaS Family BEN31_08115 PF01311 Bacterial export proteins, family 1 BEN31_08120 PF01313 Bacterial export proteins, family 3 BEN31_08125 PF00813 FliP family BEN31_08130 PF04347 Flagellar biosynthesis protein, FliO BEN31_08135 PF00072 Response regulator receiver domain BEN31_08140 PF04509 CheC-like family BEN31_08140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BEN31_08145 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BEN31_08145 PF02154 Flagellar motor switch protein FliM BEN31_08150 PF03748 Flagellar basal body-associated protein FliL BEN31_08155 PF06289 Flagellar and Swarming motility proteins BEN31_08160 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN31_08160 PF00460 Flagella basal body rod protein BEN31_08165 PF03963 Flagellar hook capping protein - N-terminal region BEN31_08170 PF02120 Flagellar hook-length control protein FliK BEN31_08175 PF03448 MgtE intracellular N domain BEN31_08180 PF02050 Flagellar FliJ protein BEN31_08185 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEN31_08185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN31_08185 PF18269 T3SS EscN ATPase C-terminal domain BEN31_08190 PF02108 Flagellar assembly protein FliH BEN31_08195 PF14842 FliG N-terminal domain BEN31_08195 PF01706 FliG C-terminal domain BEN31_08195 PF14841 FliG middle domain BEN31_08200 PF01514 Secretory protein of YscJ/FliF family BEN31_08200 PF08345 Flagellar M-ring protein C-terminal BEN31_08205 PF02049 Flagellar hook-basal body complex protein FliE BEN31_08210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN31_08210 PF00460 Flagella basal body rod protein BEN31_08215 PF00460 Flagella basal body rod protein BEN31_08220 PF08222 CodY helix-turn-helix domain BEN31_08220 PF06018 CodY GAF-like domain BEN31_08225 PF07724 AAA domain (Cdc48 subfamily) BEN31_08225 PF00004 ATPase family associated with various cellular activities (AAA) BEN31_08225 PF10431 C-terminal, D2-small domain, of ClpB protein BEN31_08230 PF00227 Proteasome subunit BEN31_08235 PF00589 Phage integrase family BEN31_08235 PF02899 Phage integrase, N-terminal SAM-like domain BEN31_08240 PF01134 Glucose inhibited division protein A BEN31_08245 PF01131 DNA topoisomerase BEN31_08245 PF01396 Topoisomerase DNA binding C4 zinc finger BEN31_08245 PF01751 Toprim domain BEN31_08250 PF02481 DNA recombination-mediator protein A BEN31_08255 PF02629 CoA binding domain BEN31_08255 PF00549 CoA-ligase BEN31_08260 PF08442 ATP-grasp domain BEN31_08260 PF00549 CoA-ligase BEN31_08265 PF01312 FlhB HrpN YscU SpaS Family BEN31_08275 PF01351 Ribonuclease HII BEN31_08280 PF01926 50S ribosome-binding GTPase BEN31_08285 PF01245 Ribosomal protein L19 BEN31_08290 PF01746 tRNA (Guanine-1)-methyltransferase BEN31_08295 PF05239 PRC-barrel domain BEN31_08295 PF01782 RimM N-terminal domain BEN31_08300 PF11068 YlqD protein BEN31_08310 PF00886 Ribosomal protein S16 BEN31_08315 PF00448 SRP54-type protein, GTPase domain BEN31_08315 PF02978 Signal peptide binding domain BEN31_08315 PF02881 SRP54-type protein, helical bundle domain BEN31_08320 PF04297 Putative helix-turn-helix protein, YlxM / p13 like BEN31_08325 PF00448 SRP54-type protein, GTPase domain BEN31_08325 PF02881 SRP54-type protein, helical bundle domain BEN31_08330 PF06470 SMC proteins Flexible Hinge Domain BEN31_08330 PF02463 RecF/RecN/SMC N terminal domain BEN31_08335 PF00035 Double-stranded RNA binding motif BEN31_08335 PF14622 Ribonuclease-III-like BEN31_08340 PF00550 Phosphopantetheine attachment site BEN31_08350 PF00698 Acyl transferase domain BEN31_08355 PF02504 Fatty acid synthesis protein BEN31_08365 PF00270 DEAD/DEAH box helicase BEN31_08365 PF00271 Helicase conserved C-terminal domain BEN31_08365 PF17191 RecG wedge domain BEN31_08370 PF03313 Serine dehydratase alpha chain BEN31_08375 PF03315 Serine dehydratase beta chain BEN31_08375 PF01842 ACT domain BEN31_08380 PF13684 Dihydroxyacetone kinase family BEN31_08380 PF02734 DAK2 domain BEN31_08385 PF03780 Asp23 family, cell envelope-related function BEN31_08390 PF00830 Ribosomal L28 family BEN31_08395 PF08183 Stage V sporulation protein family BEN31_08400 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain BEN31_08400 PF04263 Thiamin pyrophosphokinase, catalytic domain BEN31_08405 PF00834 Ribulose-phosphate 3 epimerase family BEN31_08410 PF03193 RsgA GTPase BEN31_08410 PF16745 RsgA N-terminal domain BEN31_08415 PF00069 Protein kinase domain BEN31_08415 PF03793 PASTA domain BEN31_08425 PF04055 Radical SAM superfamily BEN31_08430 PF01029 NusB family BEN31_08430 PF01189 16S rRNA methyltransferase RsmB/F BEN31_08435 PF00551 Formyl transferase BEN31_08435 PF02911 Formyl transferase, C-terminal domain BEN31_08440 PF01327 Polypeptide deformylase BEN31_08445 PF04851 Type III restriction enzyme, res subunit BEN31_08445 PF00271 Helicase conserved C-terminal domain BEN31_08445 PF17764 3′ DNA-binding domain (3′BD) BEN31_08445 PF18074 Primosomal protein N C-terminal domain BEN31_08445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BEN31_08450 PF02441 Flavoprotein BEN31_08450 PF04127 DNA / pantothenate metabolism flavoprotein BEN31_08455 PF01192 RNA polymerase Rpb6 BEN31_08460 PF00625 Guanylate kinase BEN31_08465 PF04025 Domain of unknown function (DUF370) BEN31_08470 PF03755 YicC-like family, N-terminal region BEN31_08470 PF08340 Domain of unknown function (DUF1732) BEN31_08475 PF00690 Cation transporter/ATPase, N-terminus BEN31_08475 PF00689 Cation transporting ATPase, C-terminus BEN31_08490 PF01903 CbiX BEN31_08495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEN31_08505 PF01747 ATP-sulfurylase BEN31_08505 PF14306 PUA-like domain BEN31_08510 PF01384 Phosphate transporter family BEN31_08515 PF01507 Phosphoadenosine phosphosulfate reductase family BEN31_08520 PF00156 Phosphoribosyl transferase domain BEN31_08525 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BEN31_08530 PF01180 Dihydroorotate dehydrogenase BEN31_08535 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BEN31_08540 PF02142 MGS-like domain BEN31_08540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEN31_08540 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEN31_08545 PF00117 Glutamine amidotransferase class-I BEN31_08545 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BEN31_08550 PF01979 Amidohydrolase family BEN31_08555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEN31_08555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEN31_08560 PF00860 Permease family BEN31_08565 PF00156 Phosphoribosyl transferase domain BEN31_08570 PF00849 RNA pseudouridylate synthase BEN31_08570 PF01479 S4 domain BEN31_08575 PF01252 Signal peptidase (SPase) II BEN31_08580 PF01258 Prokaryotic dksA/traR C4-type zinc finger BEN31_08585 PF00133 tRNA synthetases class I (I, L, M and V) BEN31_08585 PF08264 Anticodon-binding domain of tRNA BEN31_08590 PF05103 DivIVA protein BEN31_08595 PF01479 S4 domain BEN31_08595 PF17774 Putative RNA-binding domain in YlmH BEN31_08600 PF02325 YGGT family BEN31_08605 PF04472 Cell division protein SepF BEN31_08610 PF01168 Alanine racemase, N-terminal domain BEN31_08620 PF05239 PRC-barrel domain BEN31_08625 PF00005 ABC transporter BEN31_08630 PF03829 PTS system glucitol/sorbitol-specific IIA component BEN31_08635 PF03612 Sorbitol phosphotransferase enzyme II N-terminus BEN31_08635 PF07663 Sorbitol phosphotransferase enzyme II C-terminus BEN31_08640 PF03608 PTS system enzyme II sorbitol-specific factor BEN31_08655 PF04198 Putative sugar-binding domain BEN31_08660 PF04545 Sigma-70, region 4 BEN31_08660 PF04539 Sigma-70 region 3 BEN31_08660 PF04542 Sigma-70 region 2 BEN31_08665 PF04542 Sigma-70 region 2 BEN31_08665 PF04545 Sigma-70, region 4 BEN31_08670 PF03419 Sporulation factor SpoIIGA BEN31_08675 PF05922 Peptidase inhibitor I9 BEN31_08675 PF00082 Subtilase family BEN31_08680 PF00091 Tubulin/FtsZ family, GTPase domain BEN31_08680 PF12327 FtsZ family, C-terminal domain BEN31_08685 PF02491 SHS2 domain inserted in FTSA BEN31_08690 PF06947 Protein of unknown function (DUF1290) BEN31_08695 PF05949 Bacterial protein of unknown function (DUF881) BEN31_08700 PF05949 Bacterial protein of unknown function (DUF881) BEN31_08705 PF08478 POTRA domain, FtsQ-type BEN31_08710 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BEN31_08710 PF01565 FAD binding domain BEN31_08715 PF03033 Glycosyltransferase family 28 N-terminal domain BEN31_08715 PF04101 Glycosyltransferase family 28 C-terminal domain BEN31_08720 PF01098 Cell cycle protein BEN31_08725 PF02875 Mur ligase family, glutamate ligase domain BEN31_08725 PF08245 Mur ligase middle domain BEN31_08730 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BEN31_08730 PF00953 Glycosyl transferase family 4 BEN31_08735 PF01225 Mur ligase family, catalytic domain BEN31_08735 PF02875 Mur ligase family, glutamate ligase domain BEN31_08735 PF08245 Mur ligase middle domain BEN31_08740 PF03793 PASTA domain BEN31_08740 PF03717 Penicillin-binding Protein dimerisation domain BEN31_08740 PF00905 Penicillin binding protein transpeptidase domain BEN31_08755 PF01795 MraW methylase family BEN31_08760 PF02381 MraZ protein, putative antitoxin-like BEN31_08765 PF10079 Bacillithiol biosynthesis BshC BEN31_08770 PF08546 Ketopantoate reductase PanE/ApbA C terminal BEN31_08770 PF02558 Ketopantoate reductase PanE/ApbA BEN31_08775 PF00583 Acetyltransferase (GNAT) family BEN31_08785 PF01783 Ribosomal L32p protein family BEN31_08790 PF02620 Large ribosomal RNA subunit accumulation protein YceD BEN31_08795 PF05636 HIGH Nucleotidyl Transferase BEN31_08800 PF13180 PDZ domain BEN31_08800 PF05362 Lon protease (S16) C-terminal proteolytic domain BEN31_08805 PF01734 Patatin-like phospholipase BEN31_08810 PF07670 Nucleoside recognition BEN31_08815 PF01467 Cytidylyltransferase-like BEN31_08825 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) BEN31_08830 PF06133 Control of competence regulator ComK, YlbF/YmcA BEN31_08840 PF14003 YlbE-like protein BEN31_08845 PF14071 Putative coat protein BEN31_08850 PF14504 CAP-associated N-terminal BEN31_08850 PF00188 Cysteine-rich secretory protein family BEN31_08855 PF00571 CBS domain BEN31_08860 PF08868 YugN-like family BEN31_08865 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) BEN31_08870 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BEN31_08875 PF00510 Cytochrome c oxidase subunit III BEN31_08880 PF00115 Cytochrome C and Quinol oxidase polypeptide I BEN31_08885 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BEN31_08885 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BEN31_08885 PF00034 Cytochrome c BEN31_08890 PF01040 UbiA prenyltransferase family BEN31_08895 PF02628 Cytochrome oxidase assembly protein BEN31_08905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEN31_08905 PF00682 HMGL-like BEN31_08905 PF02436 Conserved carboxylase domain BEN31_08905 PF02785 Biotin carboxylase C-terminal domain BEN31_08905 PF00289 Biotin carboxylase, N-terminal domain BEN31_08905 PF00364 Biotin-requiring enzyme BEN31_08910 PF01098 Cell cycle protein BEN31_08915 PF07408 Protein of unknown function (DUF1507) BEN31_08920 PF04960 Glutaminase BEN31_08930 PF02562 PhoH-like protein BEN31_08930 PF13638 PIN domain BEN31_08935 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BEN31_08940 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) BEN31_08945 PF14036 YlaH-like protein BEN31_08965 PF00459 Inositol monophosphatase family BEN31_08975 PF06335 Protein of unknown function (DUF1054) BEN31_08980 PF05256 Uncharacterised protein family (UPF0223) BEN31_08985 PF01276 Orn/Lys/Arg decarboxylase, major domain BEN31_08985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BEN31_09000 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_09000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN31_09005 PF02817 e3 binding domain BEN31_09005 PF00364 Biotin-requiring enzyme BEN31_09005 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BEN31_09010 PF02779 Transketolase, pyrimidine binding domain BEN31_09010 PF02780 Transketolase, C-terminal domain BEN31_09015 PF00676 Dehydrogenase E1 component BEN31_09030 PF01327 Polypeptide deformylase BEN31_09045 PF00753 Metallo-beta-lactamase superfamily BEN31_09045 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BEN31_09045 PF17770 Ribonuclease J C-terminal domain BEN31_09050 PF13382 Adenine deaminase C-terminal domain BEN31_09050 PF01979 Amidohydrolase family BEN31_09055 PF02254 TrkA-N domain BEN31_09055 PF02080 TrkA-C domain BEN31_09060 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BEN31_09065 PF00989 PAS fold BEN31_09065 PF00512 His Kinase A (phospho-acceptor) domain BEN31_09065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_09070 PF18277 AbrB C-terminal domain BEN31_09070 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN31_09080 PF02073 Thermophilic metalloprotease (M29) BEN31_09085 PF00005 ABC transporter BEN31_09085 PF12848 ABC transporter BEN31_09095 PF10502 Signal peptidase, peptidase S26 BEN31_09100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_09100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_09105 PF00294 pfkB family carbohydrate kinase BEN31_09110 PF00455 DeoR C terminal sensor domain BEN31_09110 PF08220 DeoR-like helix-turn-helix domain BEN31_09115 PF12704 MacB-like periplasmic core domain BEN31_09115 PF02687 FtsX-like permease family BEN31_09120 PF00005 ABC transporter BEN31_09125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN31_09140 PF02597 ThiS family BEN31_09145 PF02391 MoaE protein BEN31_09150 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BEN31_09155 PF03453 MoeA N-terminal region (domain I and II) BEN31_09155 PF00994 Probable molybdopterin binding domain BEN31_09155 PF03454 MoeA C-terminal region (domain IV) BEN31_09160 PF00899 ThiF family BEN31_09165 PF12804 MobA-like NTP transferase domain BEN31_09180 PF00578 AhpC/TSA family BEN31_09185 PF00578 AhpC/TSA family BEN31_09185 PF10417 C-terminal domain of 1-Cys peroxiredoxin BEN31_09190 PF00924 Mechanosensitive ion channel BEN31_09195 PF03698 Uncharacterised protein family (UPF0180) BEN31_09200 PF01546 Peptidase family M20/M25/M40 BEN31_09200 PF07687 Peptidase dimerisation domain BEN31_09205 PF14602 Hexapeptide repeat of succinyl-transferase BEN31_09205 PF00132 Bacterial transferase hexapeptide (six repeats) BEN31_09205 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal BEN31_09210 PF00258 Flavodoxin BEN31_09220 PF00258 Flavodoxin BEN31_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_09230 PF03466 LysR substrate binding domain BEN31_09240 PF14156 Antirepressor AbbA BEN31_09245 PF04308 Ribonuclease H-like BEN31_09250 PF08796 Protein of unknown function (DUF1797) BEN31_09255 PF05067 Manganese containing catalase BEN31_09260 PF00563 EAL domain BEN31_09260 PF10388 EAL-domain associated signalling protein domain BEN31_09270 PF00149 Calcineurin-like phosphoesterase BEN31_09270 PF10518 TAT (twin-arginine translocation) pathway signal sequence BEN31_09275 PF03734 L,D-transpeptidase catalytic domain BEN31_09275 PF01476 LysM domain BEN31_09280 PF07690 Major Facilitator Superfamily BEN31_09290 PF14177 YkyB-like protein BEN31_09295 PF01584 CheW-like domain BEN31_09295 PF00072 Response regulator receiver domain BEN31_09305 PF06271 RDD family BEN31_09310 PF16916 Dimerisation domain of Zinc Transporter BEN31_09310 PF01545 Cation efflux family BEN31_09315 PF00155 Aminotransferase class I and II BEN31_09320 PF00512 His Kinase A (phospho-acceptor) domain BEN31_09320 PF00989 PAS fold BEN31_09320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_09320 PF08447 PAS fold BEN31_09325 PF00905 Penicillin binding protein transpeptidase domain BEN31_09325 PF03717 Penicillin-binding Protein dimerisation domain BEN31_09330 PF00188 Cysteine-rich secretory protein family BEN31_09335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEN31_09335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BEN31_09340 PF00106 short chain dehydrogenase BEN31_09345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_09345 PF02743 Cache domain BEN31_09345 PF00672 HAMP domain BEN31_09355 PF11132 Transcriptional regulator protein (SplA) BEN31_09360 PF05524 PEP-utilising enzyme, N-terminal BEN31_09360 PF00391 PEP-utilising enzyme, mobile domain BEN31_09360 PF02896 PEP-utilising enzyme, TIM barrel domain BEN31_09365 PF00381 PTS HPr component phosphorylation site BEN31_09370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN31_09370 PF00367 phosphotransferase system, EIIB BEN31_09370 PF02378 Phosphotransferase system, EIIC BEN31_09375 PF00874 PRD domain BEN31_09375 PF03123 CAT RNA binding domain BEN31_09380 PF00356 Bacterial regulatory proteins, lacI family BEN31_09380 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BEN31_09385 PF01321 Creatinase/Prolidase N-terminal domain BEN31_09385 PF00557 Metallopeptidase family M24 BEN31_09395 PF00578 AhpC/TSA family BEN31_09400 PF01943 Polysaccharide biosynthesis protein BEN31_09405 PF07486 Cell Wall Hydrolase BEN31_09415 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) BEN31_09425 PF14489 QueF-like protein BEN31_09430 PF04055 Radical SAM superfamily BEN31_09435 PF01242 6-pyruvoyl tetrahydropterin synthase BEN31_09440 PF06508 Queuosine biosynthesis protein QueC BEN31_09450 PF00004 ATPase family associated with various cellular activities (AAA) BEN31_09450 PF10431 C-terminal, D2-small domain, of ClpB protein BEN31_09450 PF07724 AAA domain (Cdc48 subfamily) BEN31_09450 PF17871 AAA lid domain BEN31_09455 PF01618 MotA/TolQ/ExbB proton channel family BEN31_09460 PF13677 Membrane MotB of proton-channel complex MotA/MotB BEN31_09460 PF00691 OmpA family BEN31_09465 PF01047 MarR family BEN31_09470 PF02743 Cache domain BEN31_09470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_09470 PF00512 His Kinase A (phospho-acceptor) domain BEN31_09475 PF09388 Spo0E like sporulation regulatory protein BEN31_09480 PF03079 ARD/ARD' family BEN31_09485 PF00596 Class II Aldolase and Adducin N-terminal domain BEN31_09495 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BEN31_09495 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BEN31_09500 PF00155 Aminotransferase class I and II BEN31_09505 PF01636 Phosphotransferase enzyme family BEN31_09510 PF01008 Initiation factor 2 subunit family BEN31_09515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BEN31_09515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BEN31_09520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_09520 PF00512 His Kinase A (phospho-acceptor) domain BEN31_09520 PF00989 PAS fold BEN31_09520 PF13426 PAS domain BEN31_09520 PF13188 PAS domain BEN31_09525 PF01757 Acyltransferase family BEN31_09535 PF04239 Protein of unknown function (DUF421) BEN31_09540 PF02386 Cation transport protein BEN31_09545 PF01435 Peptidase family M48 BEN31_09550 PF08876 Domain of unknown function (DUF1836) BEN31_09555 PF00269 Small, acid-soluble spore proteins, alpha/beta type BEN31_09560 PF12791 Anti-sigma factor N-terminus BEN31_09565 PF04542 Sigma-70 region 2 BEN31_09570 PF03741 Integral membrane protein TerC family BEN31_09575 PF09335 SNARE associated Golgi protein BEN31_09580 PF03707 Bacterial signalling protein N terminal repeat BEN31_09580 PF00990 Diguanylate cyclase, GGDEF domain BEN31_09580 PF00563 EAL domain BEN31_09585 PF01047 MarR family BEN31_09600 PF13411 MerR HTH family regulatory protein BEN31_09610 PF03466 LysR substrate binding domain BEN31_09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_09620 PF03448 MgtE intracellular N domain BEN31_09620 PF01769 Divalent cation transporter BEN31_09620 PF00571 CBS domain BEN31_09630 PF03413 Peptidase propeptide and YPEB domain BEN31_09635 PF03413 Peptidase propeptide and YPEB domain BEN31_09640 PF00512 His Kinase A (phospho-acceptor) domain BEN31_09640 PF00672 HAMP domain BEN31_09640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_09645 PF00072 Response regulator receiver domain BEN31_09645 PF00486 Transcriptional regulatory protein, C terminal BEN31_09650 PF00082 Subtilase family BEN31_09655 PF01717 Cobalamin-independent synthase, Catalytic domain BEN31_09655 PF08267 Cobalamin-independent synthase, N-terminal domain BEN31_09660 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEN31_09665 PF02566 OsmC-like protein BEN31_09670 PF01047 MarR family BEN31_09675 PF02566 OsmC-like protein BEN31_09685 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_09690 PF00171 Aldehyde dehydrogenase family BEN31_09695 PF00696 Amino acid kinase family BEN31_09695 PF01472 PUA domain BEN31_09700 PF01842 ACT domain BEN31_09700 PF00551 Formyl transferase BEN31_09710 PF00893 Small Multidrug Resistance protein BEN31_09715 PF00893 Small Multidrug Resistance protein BEN31_09720 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BEN31_09720 PF12833 Helix-turn-helix domain BEN31_09720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BEN31_09720 PF02805 Metal binding domain of Ada BEN31_09725 PF13302 Acetyltransferase (GNAT) domain BEN31_09740 PF03551 Transcriptional regulator PadR-like family BEN31_09745 PF03061 Thioesterase superfamily BEN31_09755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_09755 PF00005 ABC transporter BEN31_09760 PF00877 NlpC/P60 family BEN31_09765 PF13378 Enolase C-terminal domain-like BEN31_09765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN31_09770 PF17676 LD-carboxypeptidase C-terminal domain BEN31_09770 PF02016 LD-carboxypeptidase N-terminal domain BEN31_09775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN31_09780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_09780 PF00005 ABC transporter BEN31_09785 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN31_09785 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_09790 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_09795 PF04951 D-aminopeptidase BEN31_09800 PF14748 Pyrroline-5-carboxylate reductase dimerisation BEN31_09800 PF03807 NADP oxidoreductase coenzyme F420-dependent BEN31_09805 PF13180 PDZ domain BEN31_09810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN31_09815 PF13520 Amino acid permease BEN31_09825 PF04198 Putative sugar-binding domain BEN31_09840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN31_09840 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_09845 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BEN31_09845 PF02817 e3 binding domain BEN31_09845 PF00364 Biotin-requiring enzyme BEN31_09850 PF02780 Transketolase, C-terminal domain BEN31_09850 PF02779 Transketolase, pyrimidine binding domain BEN31_09850 PF00364 Biotin-requiring enzyme BEN31_09855 PF00676 Dehydrogenase E1 component BEN31_09860 PF00107 Zinc-binding dehydrogenase BEN31_09860 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_09875 PF03611 PTS system sugar-specific permease component BEN31_09895 PF01865 Protein of unknown function DUF47 BEN31_09900 PF01384 Phosphate transporter family BEN31_09905 PF14171 Toxin SpoIISA, type II toxin-antitoxin system BEN31_09910 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system BEN31_09915 PF01471 Putative peptidoglycan binding domain BEN31_09915 PF01476 LysM domain BEN31_09915 PF01510 N-acetylmuramoyl-L-alanine amidase BEN31_09920 PF06114 IrrE N-terminal-like domain BEN31_09925 PF05908 Poly-gamma-glutamate hydrolase BEN31_09940 PF00669 Bacterial flagellin N-terminal helical region BEN31_09940 PF00700 Bacterial flagellin C-terminal helical region BEN31_09945 PF00700 Bacterial flagellin C-terminal helical region BEN31_09945 PF00669 Bacterial flagellin N-terminal helical region BEN31_09955 PF00842 Alanine racemase, C-terminal domain BEN31_09955 PF01168 Alanine racemase, N-terminal domain BEN31_09975 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_09985 PF07690 Major Facilitator Superfamily BEN31_09990 PF03466 LysR substrate binding domain BEN31_09990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_10005 PF01636 Phosphotransferase enzyme family BEN31_10010 PF10852 Protein of unknown function (DUF2651) BEN31_10025 PF13176 Tetratricopeptide repeat BEN31_10025 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_10030 PF00302 Chloramphenicol acetyltransferase BEN31_10055 PF00700 Bacterial flagellin C-terminal helical region BEN31_10055 PF00669 Bacterial flagellin N-terminal helical region BEN31_10070 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BEN31_10080 PF00107 Zinc-binding dehydrogenase BEN31_10080 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_10090 PF01053 Cys/Met metabolism PLP-dependent enzyme BEN31_10095 PF01053 Cys/Met metabolism PLP-dependent enzyme BEN31_10100 PF00756 Putative esterase BEN31_10110 PF13673 Acetyltransferase (GNAT) domain BEN31_10125 PF14069 Stage VI sporulation protein F BEN31_10140 PF07098 Protein of unknown function (DUF1360) BEN31_10145 PF07552 Spore Coat Protein X and V domain BEN31_10155 PF07552 Spore Coat Protein X and V domain BEN31_10160 PF10612 Spore coat protein Z BEN31_10165 PF10612 Spore coat protein Z BEN31_10170 PF14153 Spore coat protein CotO BEN31_10180 PF08543 Phosphomethylpyrimidine kinase BEN31_10185 PF00899 ThiF family BEN31_10190 PF05690 Thiazole biosynthesis protein ThiG BEN31_10195 PF02597 ThiS family BEN31_10200 PF01266 FAD dependent oxidoreductase BEN31_10205 PF02581 Thiamine monophosphate synthase BEN31_10210 PF03070 TENA/THI-4/PQQC family BEN31_10215 PF00999 Sodium/hydrogen exchanger family BEN31_10215 PF02080 TrkA-C domain BEN31_10215 PF02254 TrkA-N domain BEN31_10220 PF00149 Calcineurin-like phosphoesterase BEN31_10225 PF00849 RNA pseudouridylate synthase BEN31_10230 PF01513 ATP-NAD kinase BEN31_10235 PF04607 Region found in RelA / SpoT proteins BEN31_10245 PF01928 CYTH domain BEN31_10250 PF01464 Transglycosylase SLT domain BEN31_10255 PF01152 Bacterial-like globin BEN31_10265 PF08439 Oligopeptidase F BEN31_10265 PF01432 Peptidase family M3 BEN31_10275 PF13396 Phospholipase_D-nuclease N-terminal BEN31_10275 PF13091 PLD-like domain BEN31_10280 PF05389 Negative regulator of genetic competence (MecA) BEN31_10285 PF03741 Integral membrane protein TerC family BEN31_10290 PF03960 ArsC family BEN31_10295 PF13508 Acetyltransferase (GNAT) domain BEN31_10305 PF00005 ABC transporter BEN31_10305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_10310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_10310 PF00005 ABC transporter BEN31_10315 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_10315 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN31_10320 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_10325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN31_10330 PF00579 tRNA synthetases class I (W and Y) BEN31_10335 PF12227 Protein of unknown function (DUF3603) BEN31_10340 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN31_10340 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_10345 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_10350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN31_10355 PF00005 ABC transporter BEN31_10355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_10360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_10360 PF00005 ABC transporter BEN31_10365 PF10026 Predicted Zn-dependent protease (DUF2268) BEN31_10370 PF02801 Beta-ketoacyl synthase, C-terminal domain BEN31_10370 PF00109 Beta-ketoacyl synthase, N-terminal domain BEN31_10375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BEN31_10375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BEN31_10385 PF10815 ComZ BEN31_10390 PF02608 ABC transporter substrate-binding protein PnrA-like BEN31_10405 PF11151 Protein of unknown function (DUF2929) BEN31_10410 PF07690 Major Facilitator Superfamily BEN31_10415 PF14168 YjzC-like protein BEN31_10420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEN31_10420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEN31_10425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEN31_10425 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEN31_10430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BEN31_10430 PF00117 Glutamine amidotransferase class-I BEN31_10435 PF00202 Aminotransferase class-III BEN31_10440 PF00696 Amino acid kinase family BEN31_10445 PF01960 ArgJ family BEN31_10450 PF02774 Semialdehyde dehydrogenase, dimerisation domain BEN31_10450 PF01118 Semialdehyde dehydrogenase, NAD binding domain BEN31_10460 PF01565 FAD binding domain BEN31_10465 PF01883 Iron-sulfur cluster assembly protein BEN31_10470 PF00326 Prolyl oligopeptidase family BEN31_10485 PF12758 Protein of unknown function (DUF3813) BEN31_10490 PF12690 Intracellular proteinase inhibitor BEN31_10495 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BEN31_10495 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEN31_10500 PF02645 Uncharacterised protein, DegV family COG1307 BEN31_10505 PF00672 HAMP domain BEN31_10505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_10505 PF02743 Cache domain BEN31_10515 PF13509 S1 domain BEN31_10515 PF17783 CvfB-like winged helix domain BEN31_10520 PF04461 Protein of unknown function (DUF520) BEN31_10525 PF02219 Methylenetetrahydrofolate reductase BEN31_10525 PF02574 Homocysteine S-methyltransferase BEN31_10530 PF02310 B12 binding domain BEN31_10530 PF02607 B12 binding domain BEN31_10530 PF02965 Vitamin B12 dependent methionine synthase, activation domain BEN31_10530 PF00809 Pterin binding enzyme BEN31_10530 PF02574 Homocysteine S-methyltransferase BEN31_10540 PF06276 Ferric iron reductase FhuF-like transporter BEN31_10540 PF04183 IucA / IucC family BEN31_10545 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BEN31_10555 PF06276 Ferric iron reductase FhuF-like transporter BEN31_10555 PF04183 IucA / IucC family BEN31_10560 PF00282 Pyridoxal-dependent decarboxylase conserved domain BEN31_10565 PF00202 Aminotransferase class-III BEN31_10585 PF12833 Helix-turn-helix domain BEN31_10585 PF02311 AraC-like ligand binding domain BEN31_10590 PF01554 MatE BEN31_10605 PF01593 Flavin containing amine oxidoreductase BEN31_10610 PF13537 Glutamine amidotransferase domain BEN31_10610 PF00733 Asparagine synthase BEN31_10615 PF10949 Protein of unknown function (DUF2777) BEN31_10620 PF07457 Protein of unknown function (DUF1516) BEN31_10625 PF01557 Fumarylacetoacetate (FAA) hydrolase family BEN31_10635 PF08757 CotH kinase protein BEN31_10645 PF10676 Spore germination protein gerPA/gerPF BEN31_10650 PF10803 Spore germination GerPB BEN31_10655 PF10737 Spore germination protein GerPC BEN31_10665 PF10970 Spore germination protein GerPE BEN31_10670 PF10676 Spore germination protein gerPA/gerPF BEN31_10680 PF13476 AAA domain BEN31_10685 PF12320 Type 5 capsule protein repressor C-terminal domain BEN31_10685 PF00149 Calcineurin-like phosphoesterase BEN31_10690 PF12705 PD-(D/E)XK nuclease superfamily BEN31_10690 PF13361 UvrD-like helicase C-terminal domain BEN31_10690 PF00580 UvrD/REP helicase N-terminal domain BEN31_10695 PF12705 PD-(D/E)XK nuclease superfamily BEN31_10700 PF02915 Rubrerythrin BEN31_10705 PF07681 DoxX BEN31_10710 PF01435 Peptidase family M48 BEN31_10720 PF05145 Transition state regulatory protein AbrB BEN31_10725 PF10502 Signal peptidase, peptidase S26 BEN31_10730 PF09335 SNARE associated Golgi protein BEN31_10740 PF03816 Cell envelope-related transcriptional attenuator domain BEN31_10745 PF01497 Periplasmic binding protein BEN31_10750 PF00005 ABC transporter BEN31_10755 PF01032 FecCD transport family BEN31_10760 PF01032 FecCD transport family BEN31_10765 PF01337 Barstar (barnase inhibitor) BEN31_10770 PF07690 Major Facilitator Superfamily BEN31_10775 PF00392 Bacterial regulatory proteins, gntR family BEN31_10775 PF00155 Aminotransferase class I and II BEN31_10785 PF14031 Putative serine dehydratase domain BEN31_10785 PF01168 Alanine racemase, N-terminal domain BEN31_10790 PF06338 ComK protein BEN31_10795 PF08858 IDEAL domain BEN31_10805 PF01266 FAD dependent oxidoreductase BEN31_10805 PF00355 Rieske [2Fe-2S] domain BEN31_10810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_10815 PF00300 Histidine phosphatase superfamily (branch 1) BEN31_10820 PF05922 Peptidase inhibitor I9 BEN31_10820 PF00082 Subtilase family BEN31_10825 PF01435 Peptidase family M48 BEN31_10825 PF16491 CAAX prenyl protease N-terminal, five membrane helices BEN31_10835 PF13193 AMP-binding enzyme C-terminal domain BEN31_10835 PF00501 AMP-binding enzyme BEN31_10840 PF03099 Biotin/lipoate A/B protein ligase family BEN31_10840 PF10437 Bacterial lipoate protein ligase C-terminus BEN31_10845 PF12706 Beta-lactamase superfamily domain BEN31_10850 PF14149 YhfH-like protein BEN31_10855 PF00375 Sodium:dicarboxylate symporter family BEN31_10860 PF05343 M42 glutamyl aminopeptidase BEN31_10870 PF17932 Tetracyclin repressor-like, C-terminal domain BEN31_10870 PF00440 Bacterial regulatory proteins, tetR family BEN31_10885 PF01208 Uroporphyrinogen decarboxylase (URO-D) BEN31_10890 PF00905 Penicillin binding protein transpeptidase domain BEN31_10890 PF00912 Transglycosylase BEN31_10895 PF03992 Antibiotic biosynthesis monooxygenase BEN31_10905 PF07687 Peptidase dimerisation domain BEN31_10905 PF01546 Peptidase family M20/M25/M40 BEN31_10910 PF12787 EcsC protein family BEN31_10915 PF05975 Bacterial ABC transporter protein EcsB BEN31_10920 PF00005 ABC transporter BEN31_10925 PF01230 HIT domain BEN31_10930 PF00266 Aminotransferase class-V BEN31_10935 PF17099 Tryptophan transporter TrpP BEN31_10945 PF12732 YtxH-like protein BEN31_10950 PF01047 MarR family BEN31_10955 PF08963 Protein of unknown function (DUF1878) BEN31_10960 PF11667 Putative zincin peptidase BEN31_10965 PF09680 Family of unknown function BEN31_10975 PF14147 Sporulation protein YhaL BEN31_10980 PF01966 HD domain BEN31_10985 PF13514 AAA domain BEN31_10990 PF00149 Calcineurin-like phosphoesterase BEN31_10995 PF14120 YhzD-like protein BEN31_11000 PF00378 Enoyl-CoA hydratase/isomerase BEN31_11010 PF02080 TrkA-C domain BEN31_11015 PF00999 Sodium/hydrogen exchanger family BEN31_11020 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BEN31_11025 PF04055 Radical SAM superfamily BEN31_11035 PF06133 Control of competence regulator ComK, YlbF/YmcA BEN31_11040 PF04286 Protein of unknown function (DUF445) BEN31_11045 PF14398 YheC/D like ATP-grasp BEN31_11050 PF14398 YheC/D like ATP-grasp BEN31_11055 PF17277 Family of unknown function (DUF5342) BEN31_11060 PF13556 PucR C-terminal helix-turn-helix domain BEN31_11065 PF00005 ABC transporter BEN31_11065 PF17912 MalK OB fold domain BEN31_11065 PF03459 TOBE domain BEN31_11070 PF00269 Small, acid-soluble spore proteins, alpha/beta type BEN31_11075 PF13460 NAD(P)H-binding BEN31_11080 PF00005 ABC transporter BEN31_11080 PF00664 ABC transporter transmembrane region BEN31_11085 PF00664 ABC transporter transmembrane region BEN31_11085 PF00005 ABC transporter BEN31_11090 PF00582 Universal stress protein family BEN31_11095 PF01063 Amino-transferase class IV BEN31_11100 PF01522 Polysaccharide deacetylase BEN31_11105 PF02146 Sir2 family BEN31_11110 PF00924 Mechanosensitive ion channel BEN31_11115 PF03009 Glycerophosphoryl diester phosphodiesterase family BEN31_11120 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BEN31_11125 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BEN31_11135 PF03471 Transporter associated domain BEN31_11135 PF00571 CBS domain BEN31_11135 PF01595 Cyclin M transmembrane N-terminal domain BEN31_11140 PF13411 MerR HTH family regulatory protein BEN31_11145 PF01595 Cyclin M transmembrane N-terminal domain BEN31_11145 PF03471 Transporter associated domain BEN31_11145 PF00571 CBS domain BEN31_11150 PF01553 Acyltransferase BEN31_11155 PF04542 Sigma-70 region 2 BEN31_11155 PF08281 Sigma-70, region 4 BEN31_11160 PF13791 Sigma factor regulator C-terminal BEN31_11160 PF13800 Sigma factor regulator N-terminal BEN31_11165 PF17453 Sigma-M inhibitor BEN31_11170 PF01476 LysM domain BEN31_11170 PF00877 NlpC/P60 family BEN31_11175 PF00245 Alkaline phosphatase BEN31_11180 PF04293 SpoVR like protein BEN31_11185 PF00970 Oxidoreductase FAD-binding domain BEN31_11185 PF00042 Globin BEN31_11185 PF00175 Oxidoreductase NAD-binding domain BEN31_11190 PF02082 Transcriptional regulator BEN31_11195 PF06628 Catalase-related immune-responsive BEN31_11195 PF00199 Catalase BEN31_11200 PF13028 Protein of unknown function (DUF3889) BEN31_11205 PF14148 YhdB-like protein BEN31_11215 PF00196 Bacterial regulatory proteins, luxR family BEN31_11215 PF00072 Response regulator receiver domain BEN31_11220 PF07730 Histidine kinase BEN31_11220 PF13185 GAF domain BEN31_11225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEN31_11225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEN31_11225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEN31_11225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEN31_11230 PF01266 FAD dependent oxidoreductase BEN31_11230 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BEN31_11235 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN31_11235 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN31_11240 PF00230 Major intrinsic protein BEN31_11245 PF04309 Glycerol-3-phosphate responsive antiterminator BEN31_11250 PF00202 Aminotransferase class-III BEN31_11255 PF13556 PucR C-terminal helix-turn-helix domain BEN31_11255 PF17853 GGDEF-like domain BEN31_11255 PF05651 Putative sugar diacid recognition BEN31_11270 PF00795 Carbon-nitrogen hydrolase BEN31_11270 PF00583 Acetyltransferase (GNAT) family BEN31_11275 PF13419 Haloacid dehalogenase-like hydrolase BEN31_11285 PF01479 S4 domain BEN31_11285 PF00849 RNA pseudouridylate synthase BEN31_11290 PF04203 Sortase domain BEN31_11295 PF00149 Calcineurin-like phosphoesterase BEN31_11295 PF00565 Staphylococcal nuclease homologue BEN31_11295 PF00746 LPXTG cell wall anchor motif BEN31_11295 PF02872 5'-nucleotidase, C-terminal domain BEN31_11300 PF13426 PAS domain BEN31_11300 PF00512 His Kinase A (phospho-acceptor) domain BEN31_11300 PF00989 PAS fold BEN31_11300 PF13188 PAS domain BEN31_11300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_11305 PF07875 Coat F domain BEN31_11315 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) BEN31_11330 PF00990 Diguanylate cyclase, GGDEF domain BEN31_11330 PF07694 5TMR of 5TMR-LYT BEN31_11335 PF00313 'Cold-shock' DNA-binding domain BEN31_11345 PF03358 NADPH-dependent FMN reductase BEN31_11350 PF07690 Major Facilitator Superfamily BEN31_11360 PF04285 Protein of unknown function (DUF444) BEN31_11365 PF06798 PrkA serine protein kinase C-terminal domain BEN31_11365 PF08298 PrkA AAA domain BEN31_11375 PF00588 SpoU rRNA Methylase family BEN31_11380 PF12671 Putative amidase domain BEN31_11385 PF08331 Domain of unknown function (DUF1730) BEN31_11420 PF00005 ABC transporter BEN31_11430 PF01053 Cys/Met metabolism PLP-dependent enzyme BEN31_11435 PF10502 Signal peptidase, peptidase S26 BEN31_11440 PF00884 Sulfatase BEN31_11570 PF18576 Helix-turn-helix domain BEN31_11570 PF14540 Nucleotidyltransferase-like BEN31_11575 PF11023 Zinc-ribbon containing domain BEN31_11580 PF01475 Ferric uptake regulator family BEN31_11585 PF00578 AhpC/TSA family BEN31_11590 PF00202 Aminotransferase class-III BEN31_11595 PF06081 Aromatic acid exporter family member 1 BEN31_11610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN31_11615 PF00005 ABC transporter BEN31_11615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_11620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN31_11620 PF00005 ABC transporter BEN31_11625 PF00005 ABC transporter BEN31_11625 PF00664 ABC transporter transmembrane region BEN31_11630 PF04167 Protein of unknown function (DUF402) BEN31_11640 PF04259 Small, acid-soluble spore protein, gamma-type BEN31_11655 PF14815 NUDIX domain BEN31_11655 PF00730 HhH-GPD superfamily base excision DNA repair protein BEN31_11660 PF04307 LexA-binding, inner membrane-associated putative hydrolase BEN31_11705 PF04545 Sigma-70, region 4 BEN31_11710 PF00190 Cupin BEN31_11725 PF09586 Bacterial membrane protein YfhO BEN31_11730 PF00535 Glycosyl transferase family 2 BEN31_11735 PF14043 WVELL protein BEN31_11740 PF08176 Small acid-soluble spore protein K family BEN31_11745 PF08838 Protein of unknown function (DUF1811) BEN31_11750 PF02631 RecX family BEN31_11755 PF01370 NAD dependent epimerase/dehydratase family BEN31_11755 PF08338 Domain of unknown function (DUF1731) BEN31_11770 PF00881 Nitroreductase family BEN31_11775 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_11790 PF03706 Lysylphosphatidylglycerol synthase TM region BEN31_11790 PF09924 Uncharacterised conserved protein (DUF2156) BEN31_11795 PF01047 MarR family BEN31_11805 PF12867 DinB superfamily BEN31_11810 PF00107 Zinc-binding dehydrogenase BEN31_11810 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_11820 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_11825 PF00657 GDSL-like Lipase/Acylhydrolase BEN31_11840 PF00440 Bacterial regulatory proteins, tetR family BEN31_11840 PF17934 Tetracyclin repressor-like, C-terminal domain BEN31_11845 PF00893 Small Multidrug Resistance protein BEN31_11850 PF00893 Small Multidrug Resistance protein BEN31_11890 PF03129 Anticodon binding domain BEN31_11890 PF02824 TGS domain BEN31_11890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN31_11890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEN31_11905 PF07690 Major Facilitator Superfamily BEN31_11910 PF07739 TipAS antibiotic-recognition domain BEN31_11910 PF13411 MerR HTH family regulatory protein BEN31_11920 PF01938 TRAM domain BEN31_11920 PF05958 tRNA (Uracil-5-)-methyltransferase BEN31_11925 PF00730 HhH-GPD superfamily base excision DNA repair protein BEN31_11935 PF01544 CorA-like Mg2+ transporter protein BEN31_11945 PF01522 Polysaccharide deacetylase BEN31_11955 PF08756 YfkB-like domain BEN31_11955 PF04055 Radical SAM superfamily BEN31_11960 PF00924 Mechanosensitive ion channel BEN31_11970 PF01709 Transcriptional regulator BEN31_11990 PF13732 Domain of unknown function (DUF4162) BEN31_11990 PF00005 ABC transporter BEN31_12000 PF14167 YfkD-like protein BEN31_12005 PF01699 Sodium/calcium exchanger protein BEN31_12015 PF07690 Major Facilitator Superfamily BEN31_12020 PF03631 Virulence factor BrkB BEN31_12030 PF01451 Low molecular weight phosphotyrosine protein phosphatase BEN31_12035 PF01235 Sodium:alanine symporter family BEN31_12040 PF06569 Protein of unknown function (DUF1128) BEN31_12045 PF01965 DJ-1/PfpI family BEN31_12050 PF00149 Calcineurin-like phosphoesterase BEN31_12050 PF02872 5'-nucleotidase, C-terminal domain BEN31_12060 PF00392 Bacterial regulatory proteins, gntR family BEN31_12060 PF07702 UTRA domain BEN31_12065 PF16657 Maltogenic Amylase, C-terminal domain BEN31_12065 PF00128 Alpha amylase, catalytic domain BEN31_12070 PF00367 phosphotransferase system, EIIB BEN31_12070 PF02378 Phosphotransferase system, EIIC BEN31_12075 PF09350 Domain of unknown function (DUF1992) BEN31_12080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_12080 PF02743 Cache domain BEN31_12080 PF00672 HAMP domain BEN31_12085 PF00282 Pyridoxal-dependent decarboxylase conserved domain BEN31_12095 PF00884 Sulfatase BEN31_12100 PF14172 Domain of unknown function (DUF4309) BEN31_12110 PF05675 Protein of unknown function (DUF817) BEN31_12115 PF00367 phosphotransferase system, EIIB BEN31_12115 PF02378 Phosphotransferase system, EIIC BEN31_12120 PF00557 Metallopeptidase family M24 BEN31_12125 PF11121 Protein of unknown function (DUF2639) BEN31_12130 PF03475 3-alpha domain BEN31_12130 PF03473 MOSC domain BEN31_12135 PF00708 Acylphosphatase BEN31_12140 PF02898 Nitric oxide synthase, oxygenase domain BEN31_12145 PF03551 Transcriptional regulator PadR-like family BEN31_12145 PF10400 Virulence activator alpha C-term BEN31_12150 PF05870 Phenolic acid decarboxylase (PAD) BEN31_12160 PF03600 Citrate transporter BEN31_12165 PF03401 Tripartite tricarboxylate transporter family receptor BEN31_12170 PF00072 Response regulator receiver domain BEN31_12170 PF08279 HTH domain BEN31_12170 PF12431 Transcriptional regulator BEN31_12175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_12175 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BEN31_12185 PF01872 RibD C-terminal domain BEN31_12185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEN31_12195 PF03781 Sulfatase-modifying factor enzyme 1 BEN31_12200 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BEN31_12200 PF00925 GTP cyclohydrolase II BEN31_12210 PF11181 Heat induced stress protein YflT BEN31_12215 PF11486 Protein of unknown function (DUF3212) BEN31_12220 PF16884 N-terminal domain of oxidoreductase BEN31_12220 PF00107 Zinc-binding dehydrogenase BEN31_12225 PF00271 Helicase conserved C-terminal domain BEN31_12225 PF00270 DEAD/DEAH box helicase BEN31_12230 PF00005 ABC transporter BEN31_12230 PF12848 ABC transporter BEN31_12235 PF07690 Major Facilitator Superfamily BEN31_12240 PF13411 MerR HTH family regulatory protein BEN31_12245 PF02649 Type I GTP cyclohydrolase folE2 BEN31_12250 PF16326 ABC transporter C-terminal domain BEN31_12250 PF00005 ABC transporter BEN31_12250 PF12848 ABC transporter BEN31_12255 PF00535 Glycosyl transferase family 2 BEN31_12255 PF13181 Tetratricopeptide repeat BEN31_12260 PF13520 Amino acid permease BEN31_12265 PF00939 Sodium:sulfate symporter transmembrane region BEN31_12270 PF03717 Penicillin-binding Protein dimerisation domain BEN31_12270 PF00905 Penicillin binding protein transpeptidase domain BEN31_12270 PF05223 NTF2-like N-terminal transpeptidase domain BEN31_12275 PF07690 Major Facilitator Superfamily BEN31_12280 PF03407 Nucleotide-diphospho-sugar transferase BEN31_12285 PF00535 Glycosyl transferase family 2 BEN31_12290 PF03407 Nucleotide-diphospho-sugar transferase BEN31_12295 PF16363 GDP-mannose 4,6 dehydratase BEN31_12300 PF00483 Nucleotidyl transferase BEN31_12305 PF13039 Protein of unknown function (DUF3900) BEN31_12305 PF13037 Domain of unknown function (DUF3898) BEN31_12315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_12315 PF03466 LysR substrate binding domain BEN31_12325 PF07690 Major Facilitator Superfamily BEN31_12330 PF01380 SIS domain BEN31_12330 PF01418 Helix-turn-helix domain, rpiR family BEN31_12335 PF02056 Family 4 glycosyl hydrolase BEN31_12335 PF11975 Family 4 glycosyl hydrolase C-terminal domain BEN31_12340 PF13021 Domain of unknown function (DUF3885) BEN31_12350 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_12370 PF01207 Dihydrouridine synthase (Dus) BEN31_12390 PF02463 RecF/RecN/SMC N terminal domain BEN31_12395 PF05958 tRNA (Uracil-5-)-methyltransferase BEN31_12395 PF01938 TRAM domain BEN31_12400 PF00781 Diacylglycerol kinase catalytic domain BEN31_12405 PF01156 Inosine-uridine preferring nucleoside hydrolase BEN31_12410 PF00873 AcrB/AcrD/AcrF family BEN31_12415 PF00440 Bacterial regulatory proteins, tetR family BEN31_12420 PF02637 GatB domain BEN31_12420 PF02934 GatB/GatE catalytic domain BEN31_12425 PF01425 Amidase BEN31_12430 PF02686 Glu-tRNAGln amidotransferase C subunit BEN31_12435 PF00474 Sodium:solute symporter family BEN31_12440 PF02308 MgtC family BEN31_12445 PF00245 Alkaline phosphatase BEN31_12450 PF01636 Phosphotransferase enzyme family BEN31_12455 PF00668 Condensation domain BEN31_12455 PF00550 Phosphopantetheine attachment site BEN31_12455 PF02801 Beta-ketoacyl synthase, C-terminal domain BEN31_12455 PF00109 Beta-ketoacyl synthase, N-terminal domain BEN31_12455 PF16197 Ketoacyl-synthetase C-terminal extension BEN31_12455 PF00698 Acyl transferase domain BEN31_12460 PF00550 Phosphopantetheine attachment site BEN31_12460 PF02801 Beta-ketoacyl synthase, C-terminal domain BEN31_12460 PF00668 Condensation domain BEN31_12460 PF00109 Beta-ketoacyl synthase, N-terminal domain BEN31_12460 PF00698 Acyl transferase domain BEN31_12460 PF16197 Ketoacyl-synthetase C-terminal extension BEN31_12465 PF00550 Phosphopantetheine attachment site BEN31_12465 PF16197 Ketoacyl-synthetase C-terminal extension BEN31_12465 PF00668 Condensation domain BEN31_12465 PF00698 Acyl transferase domain BEN31_12465 PF02801 Beta-ketoacyl synthase, C-terminal domain BEN31_12465 PF00109 Beta-ketoacyl synthase, N-terminal domain BEN31_12470 PF13193 AMP-binding enzyme C-terminal domain BEN31_12470 PF00550 Phosphopantetheine attachment site BEN31_12470 PF00501 AMP-binding enzyme BEN31_12470 PF00668 Condensation domain BEN31_12475 PF00668 Condensation domain BEN31_12475 PF13193 AMP-binding enzyme C-terminal domain BEN31_12475 PF00501 AMP-binding enzyme BEN31_12475 PF00550 Phosphopantetheine attachment site BEN31_12480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN31_12480 PF02770 Acyl-CoA dehydrogenase, middle domain BEN31_12480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN31_12495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BEN31_12495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BEN31_12500 PF00975 Thioesterase domain BEN31_12510 PF00144 Beta-lactamase BEN31_12515 PF13193 AMP-binding enzyme C-terminal domain BEN31_12515 PF00501 AMP-binding enzyme BEN31_12515 PF00668 Condensation domain BEN31_12515 PF00550 Phosphopantetheine attachment site BEN31_12525 PF07537 CamS sex pheromone cAM373 precursor BEN31_12530 PF00533 BRCA1 C Terminus (BRCT) domain BEN31_12530 PF01653 NAD-dependent DNA ligase adenylation domain BEN31_12530 PF03120 NAD-dependent DNA ligase OB-fold domain BEN31_12530 PF12826 Helix-hairpin-helix motif BEN31_12530 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BEN31_12535 PF00580 UvrD/REP helicase N-terminal domain BEN31_12535 PF13361 UvrD-like helicase C-terminal domain BEN31_12540 PF01884 PcrB family BEN31_12555 PF01645 Conserved region in glutamate synthase BEN31_12560 PF01371 Trp repressor protein BEN31_12565 PF01979 Amidohydrolase family BEN31_12565 PF13382 Adenine deaminase C-terminal domain BEN31_12570 PF11127 Protein of unknown function (DUF2892) BEN31_12575 PF07687 Peptidase dimerisation domain BEN31_12575 PF01546 Peptidase family M20/M25/M40 BEN31_12580 PF01144 Coenzyme A transferase BEN31_12585 PF01144 Coenzyme A transferase BEN31_12590 PF00202 Aminotransferase class-III BEN31_12610 PF02844 Phosphoribosylglycinamide synthetase, N domain BEN31_12610 PF02843 Phosphoribosylglycinamide synthetase, C domain BEN31_12610 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BEN31_12615 PF01808 AICARFT/IMPCHase bienzyme BEN31_12615 PF02142 MGS-like domain BEN31_12620 PF00551 Formyl transferase BEN31_12625 PF02769 AIR synthase related protein, C-terminal domain BEN31_12625 PF00586 AIR synthase related protein, N-terminal domain BEN31_12630 PF00156 Phosphoribosyl transferase domain BEN31_12635 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BEN31_12635 PF00586 AIR synthase related protein, N-terminal domain BEN31_12635 PF02769 AIR synthase related protein, C-terminal domain BEN31_12645 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase BEN31_12650 PF01259 SAICAR synthetase BEN31_12655 PF00206 Lyase BEN31_12655 PF10397 Adenylosuccinate lyase C-terminus BEN31_12660 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BEN31_12660 PF02222 ATP-grasp domain BEN31_12665 PF00731 AIR carboxylase BEN31_12670 PF14044 NETI protein BEN31_12675 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEN31_12685 PF00860 Permease family BEN31_12690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_12690 PF03466 LysR substrate binding domain BEN31_12695 PF07690 Major Facilitator Superfamily BEN31_12710 PF13302 Acetyltransferase (GNAT) domain BEN31_12735 PF02915 Rubrerythrin BEN31_12740 PF07883 Cupin domain BEN31_12750 PF13302 Acetyltransferase (GNAT) domain BEN31_12760 PF12833 Helix-turn-helix domain BEN31_12765 PF00682 HMGL-like BEN31_12765 PF08502 LeuA allosteric (dimerisation) domain BEN31_12770 PF12833 Helix-turn-helix domain BEN31_12770 PF02311 AraC-like ligand binding domain BEN31_12775 PF04073 Aminoacyl-tRNA editing domain BEN31_12780 PF00958 GMP synthase C terminal domain BEN31_12780 PF02540 NAD synthase BEN31_12780 PF00117 Glutamine amidotransferase class-I BEN31_12785 PF13559 Domain of unknown function (DUF4129) BEN31_12785 PF11992 Domain of unknown function (DUF3488) BEN31_12785 PF01841 Transglutaminase-like superfamily BEN31_12790 PF01882 Protein of unknown function DUF58 BEN31_12795 PF07726 ATPase family associated with various cellular activities (AAA) BEN31_12795 PF17863 AAA lid domain BEN31_12800 PF16916 Dimerisation domain of Zinc Transporter BEN31_12800 PF01545 Cation efflux family BEN31_12805 PF00324 Amino acid permease BEN31_12810 PF00394 Multicopper oxidase BEN31_12810 PF07732 Multicopper oxidase BEN31_12810 PF07731 Multicopper oxidase BEN31_12825 PF07676 WD40-like Beta Propeller Repeat BEN31_12830 PF03330 Lytic transglycolase BEN31_12850 PF04299 Putative FMN-binding domain BEN31_12855 PF00583 Acetyltransferase (GNAT) family BEN31_12860 PF01047 MarR family BEN31_12865 PF11553 Protein of unknown function (DUF3231) BEN31_12875 PF00118 TCP-1/cpn60 chaperonin family BEN31_12880 PF00166 Chaperonin 10 Kd subunit BEN31_12885 PF02517 CPBP intramembrane metalloprotease BEN31_12890 PF14146 Domain of unknown function (DUF4305) BEN31_12895 PF00293 NUDIX domain BEN31_12900 PF00902 Sec-independent protein translocase protein (TatC) BEN31_12905 PF02416 mttA/Hcf106 family BEN31_12910 PF02629 CoA binding domain BEN31_12910 PF06971 Putative DNA-binding protein N-terminus BEN31_12915 PF01967 MoaC family BEN31_12920 PF12848 ABC transporter BEN31_12920 PF16326 ABC transporter C-terminal domain BEN31_12920 PF00005 ABC transporter BEN31_12925 PF00814 Glycoprotease family BEN31_12930 PF00583 Acetyltransferase (GNAT) family BEN31_12935 PF00814 Glycoprotease family BEN31_12940 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BEN31_12945 PF00586 AIR synthase related protein, N-terminal domain BEN31_12945 PF02769 AIR synthase related protein, C-terminal domain BEN31_12985 PF00375 Sodium:dicarboxylate symporter family BEN31_12995 PF00892 EamA-like transporter family BEN31_13000 PF03591 AzlC protein BEN31_13010 PF01596 O-methyltransferase BEN31_13020 PF00248 Aldo/keto reductase family BEN31_13025 PF03466 LysR substrate binding domain BEN31_13025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_13030 PF00583 Acetyltransferase (GNAT) family BEN31_13035 PF01810 LysE type translocator BEN31_13040 PF07883 Cupin domain BEN31_13040 PF01381 Helix-turn-helix BEN31_13055 PF00881 Nitroreductase family BEN31_13060 PF01047 MarR family BEN31_13065 PF01872 RibD C-terminal domain BEN31_13070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN31_13075 PF00583 Acetyltransferase (GNAT) family BEN31_13100 PF07690 Major Facilitator Superfamily BEN31_13105 PF00440 Bacterial regulatory proteins, tetR family BEN31_13105 PF16925 Tetracyclin repressor-like, C-terminal domain BEN31_13115 PF00561 alpha/beta hydrolase fold BEN31_13120 PF00710 Asparaginase, N-terminal BEN31_13120 PF17763 Glutaminase/Asparaginase C-terminal domain BEN31_13140 PF00106 short chain dehydrogenase BEN31_13155 PF07690 Major Facilitator Superfamily BEN31_13160 PF00440 Bacterial regulatory proteins, tetR family BEN31_13165 PF00722 Glycosyl hydrolases family 16 BEN31_13170 PF13411 MerR HTH family regulatory protein BEN31_13175 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_13175 PF00107 Zinc-binding dehydrogenase BEN31_13180 PF02559 CarD-like/TRCF domain BEN31_13185 PF00313 'Cold-shock' DNA-binding domain BEN31_13190 PF13673 Acetyltransferase (GNAT) domain BEN31_13190 PF04229 GrpB protein BEN31_13200 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_13200 PF00107 Zinc-binding dehydrogenase BEN31_13205 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase BEN31_13215 PF07690 Major Facilitator Superfamily BEN31_13220 PF00384 Molybdopterin oxidoreductase BEN31_13220 PF01568 Molydopterin dinucleotide binding domain BEN31_13225 PF02525 Flavodoxin-like fold BEN31_13230 PF03466 LysR substrate binding domain BEN31_13230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_13270 PF01590 GAF domain BEN31_13270 PF00158 Sigma-54 interaction domain BEN31_13270 PF02954 Bacterial regulatory protein, Fis family BEN31_13275 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_13275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN31_13280 PF02817 e3 binding domain BEN31_13280 PF00364 Biotin-requiring enzyme BEN31_13280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BEN31_13285 PF02779 Transketolase, pyrimidine binding domain BEN31_13285 PF02780 Transketolase, C-terminal domain BEN31_13295 PF17283 SprT-like zinc ribbon domain BEN31_13295 PF10263 SprT-like family BEN31_13300 PF17674 HHH domain BEN31_13300 PF16921 Tex protein YqgF-like domain BEN31_13300 PF00575 S1 RNA binding domain BEN31_13300 PF09371 Tex-like protein N-terminal domain BEN31_13305 PF07228 Stage II sporulation protein E (SpoIIE) BEN31_13310 PF04545 Sigma-70, region 4 BEN31_13310 PF04539 Sigma-70 region 3 BEN31_13310 PF04542 Sigma-70 region 2 BEN31_13315 PF13581 Histidine kinase-like ATPase domain BEN31_13320 PF01740 STAS domain BEN31_13325 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain BEN31_13325 PF07228 Stage II sporulation protein E (SpoIIE) BEN31_13330 PF13581 Histidine kinase-like ATPase domain BEN31_13335 PF01740 STAS domain BEN31_13340 PF01740 STAS domain BEN31_13340 PF08678 Rsbr N terminal BEN31_13345 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BEN31_13350 PF01402 Ribbon-helix-helix protein, copG family BEN31_13355 PF01168 Alanine racemase, N-terminal domain BEN31_13355 PF00842 Alanine racemase, C-terminal domain BEN31_13365 PF01648 4'-phosphopantetheinyl transferase superfamily BEN31_13370 PF01694 Rhomboid family BEN31_13375 PF03703 Bacterial PH domain BEN31_13380 PF03703 Bacterial PH domain BEN31_13385 PF00271 Helicase conserved C-terminal domain BEN31_13385 PF00270 DEAD/DEAH box helicase BEN31_13395 PF12146 Serine aminopeptidase, S33 BEN31_13400 PF01225 Mur ligase family, catalytic domain BEN31_13400 PF08245 Mur ligase middle domain BEN31_13400 PF02875 Mur ligase family, glutamate ligase domain BEN31_13405 PF07478 D-ala D-ala ligase C-terminus BEN31_13405 PF01820 D-ala D-ala ligase N-terminus BEN31_13410 PF00085 Thioredoxin BEN31_13415 PF13040 Fur-regulated basic protein B BEN31_13430 PF00005 ABC transporter BEN31_13435 PF00375 Sodium:dicarboxylate symporter family BEN31_13440 PF01594 AI-2E family transporter BEN31_13445 PF00375 Sodium:dicarboxylate symporter family BEN31_13450 PF00072 Response regulator receiver domain BEN31_13450 PF08279 HTH domain BEN31_13455 PF17203 Single cache domain 3 BEN31_13455 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BEN31_13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_13460 PF03480 Bacterial extracellular solute-binding protein, family 7 BEN31_13470 PF04226 Transglycosylase associated protein BEN31_13475 PF01566 Natural resistance-associated macrophage protein BEN31_13480 PF13302 Acetyltransferase (GNAT) domain BEN31_13505 PF14449 Pre-toxin TG BEN31_13505 PF04740 LXG domain of WXG superfamily BEN31_13505 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues BEN31_13510 PF00205 Thiamine pyrophosphate enzyme, central domain BEN31_13510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN31_13510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN31_13515 PF13520 Amino acid permease BEN31_13520 PF03170 Bacterial cellulose synthase subunit BEN31_13530 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) BEN31_13535 PF00990 Diguanylate cyclase, GGDEF domain BEN31_13545 PF01131 DNA topoisomerase BEN31_13545 PF01751 Toprim domain BEN31_13550 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN31_13555 PF00892 EamA-like transporter family BEN31_13560 PF02311 AraC-like ligand binding domain BEN31_13560 PF12833 Helix-turn-helix domain BEN31_13565 PF00392 Bacterial regulatory proteins, gntR family BEN31_13565 PF07729 FCD domain BEN31_13570 PF12823 Domain of unknown function (DUF3817) BEN31_13590 PF16242 Pyridoxamine 5'-phosphate oxidase like BEN31_13600 PF13649 Methyltransferase domain BEN31_13605 PF08279 HTH domain BEN31_13605 PF00874 PRD domain BEN31_13605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_13605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_13605 PF05043 Mga helix-turn-helix domain BEN31_13615 PF13472 GDSL-like Lipase/Acylhydrolase family BEN31_13620 PF02525 Flavodoxin-like fold BEN31_13625 PF01614 Bacterial transcriptional regulator BEN31_13625 PF09339 IclR helix-turn-helix domain BEN31_13630 PF02626 Carboxyltransferase domain, subdomain A and B BEN31_13635 PF02682 Carboxyltransferase domain, subdomain C and D BEN31_13640 PF07286 Protein of unknown function (DUF1445) BEN31_13645 PF01566 Natural resistance-associated macrophage protein BEN31_13650 PF03746 LamB/YcsF family BEN31_13660 PF05901 Excalibur calcium-binding domain BEN31_13665 PF12681 Glyoxalase-like domain BEN31_13685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_13685 PF02743 Cache domain BEN31_13685 PF00672 HAMP domain BEN31_13690 PF01232 Mannitol dehydrogenase Rossmann domain BEN31_13690 PF08125 Mannitol dehydrogenase C-terminal domain BEN31_13695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_13700 PF02378 Phosphotransferase system, EIIC BEN31_13700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_13705 PF05425 Copper resistance protein D BEN31_13705 PF13115 YtkA-like BEN31_13705 PF04234 CopC domain BEN31_13710 PF07987 Domain of unkown function (DUF1775) BEN31_13715 PF02525 Flavodoxin-like fold BEN31_13720 PF00171 Aldehyde dehydrogenase family BEN31_13725 PF13520 Amino acid permease BEN31_13730 PF00202 Aminotransferase class-III BEN31_13735 PF00155 Aminotransferase class I and II BEN31_13735 PF00392 Bacterial regulatory proteins, gntR family BEN31_13740 PF01022 Bacterial regulatory protein, arsR family BEN31_13750 PF00440 Bacterial regulatory proteins, tetR family BEN31_13755 PF07690 Major Facilitator Superfamily BEN31_13760 PF13840 ACT domain BEN31_13760 PF00696 Amino acid kinase family BEN31_13765 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain BEN31_13765 PF01740 STAS domain BEN31_13770 PF03972 MmgE/PrpD family BEN31_13780 PF00005 ABC transporter BEN31_13785 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_13790 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_13805 PF12708 Pectate lyase superfamily protein BEN31_13805 PF13229 Right handed beta helix region BEN31_13810 PF00854 POT family BEN31_13815 PF00324 Amino acid permease BEN31_13820 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_13825 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_13830 PF00005 ABC transporter BEN31_13840 PF01648 4'-phosphopantetheinyl transferase superfamily BEN31_13845 PF00392 Bacterial regulatory proteins, gntR family BEN31_13845 PF00155 Aminotransferase class I and II BEN31_13850 PF00892 EamA-like transporter family BEN31_13865 PF00005 ABC transporter BEN31_13880 PF00975 Thioesterase domain BEN31_13885 PF00550 Phosphopantetheine attachment site BEN31_13885 PF00501 AMP-binding enzyme BEN31_13885 PF13193 AMP-binding enzyme C-terminal domain BEN31_13885 PF00668 Condensation domain BEN31_13890 PF00550 Phosphopantetheine attachment site BEN31_13890 PF00501 AMP-binding enzyme BEN31_13890 PF00668 Condensation domain BEN31_13890 PF13193 AMP-binding enzyme C-terminal domain BEN31_13895 PF00975 Thioesterase domain BEN31_13895 PF00668 Condensation domain BEN31_13895 PF13193 AMP-binding enzyme C-terminal domain BEN31_13895 PF00501 AMP-binding enzyme BEN31_13895 PF00550 Phosphopantetheine attachment site BEN31_13900 PF13193 AMP-binding enzyme C-terminal domain BEN31_13900 PF00501 AMP-binding enzyme BEN31_13900 PF00550 Phosphopantetheine attachment site BEN31_13900 PF00668 Condensation domain BEN31_13905 PF00550 Phosphopantetheine attachment site BEN31_13905 PF00668 Condensation domain BEN31_13905 PF13193 AMP-binding enzyme C-terminal domain BEN31_13905 PF00501 AMP-binding enzyme BEN31_13910 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_13915 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_13920 PF00005 ABC transporter BEN31_13920 PF08402 TOBE domain BEN31_13935 PF05378 Hydantoinase/oxoprolinase N-terminal region BEN31_13935 PF01968 Hydantoinase/oxoprolinase BEN31_13945 PF14040 Deoxyribonuclease NucA/NucB BEN31_13950 PF17202 Single cache domain 3 BEN31_13950 PF00672 HAMP domain BEN31_13950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_13955 PF11033 Competence protein J (ComJ) BEN31_13960 PF02522 Aminoglycoside 3-N-acetyltransferase BEN31_13965 PF01037 Lrp/AsnC ligand binding domain BEN31_13970 PF12706 Beta-lactamase superfamily domain BEN31_13975 PF10925 Protein of unknown function (DUF2680) BEN31_13980 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_13985 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_13990 PF02040 Arsenical pump membrane protein BEN31_13995 PF17853 GGDEF-like domain BEN31_13995 PF13556 PucR C-terminal helix-turn-helix domain BEN31_14000 PF00171 Aldehyde dehydrogenase family BEN31_14005 PF01619 Proline dehydrogenase BEN31_14010 PF10127 RNA repair pathway DNA polymerase beta family BEN31_14020 PF05448 Acetyl xylan esterase (AXE1) BEN31_14025 PF00795 Carbon-nitrogen hydrolase BEN31_14030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_14030 PF03466 LysR substrate binding domain BEN31_14035 PF08241 Methyltransferase domain BEN31_14040 PF01202 Shikimate kinase BEN31_14045 PF07690 Major Facilitator Superfamily BEN31_14050 PF00356 Bacterial regulatory proteins, lacI family BEN31_14055 PF00701 Dihydrodipicolinate synthetase family BEN31_14060 PF02540 NAD synthase BEN31_14065 PF09347 Domain of unknown function (DUF1989) BEN31_14070 PF00324 Amino acid permease BEN31_14075 PF08892 YqcI/YcgG family BEN31_14080 PF01810 LysE type translocator BEN31_14085 PF07690 Major Facilitator Superfamily BEN31_14090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN31_14090 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEN31_14095 PF05116 Sucrose-6F-phosphate phosphohydrolase BEN31_14100 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEN31_14105 PF00356 Bacterial regulatory proteins, lacI family BEN31_14110 PF02652 L-lactate permease BEN31_14115 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BEN31_14115 PF00056 lactate/malate dehydrogenase, NAD binding domain BEN31_14120 PF03606 C4-dicarboxylate anaerobic carrier BEN31_14125 PF07687 Peptidase dimerisation domain BEN31_14125 PF01546 Peptidase family M20/M25/M40 BEN31_14140 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BEN31_14145 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_14150 PF00005 ABC transporter BEN31_14150 PF00571 CBS domain BEN31_14155 PF05816 Toxic anion resistance protein (TelA) BEN31_14160 PF14266 Putative component of 'biosynthetic module' BEN31_14185 PF03741 Integral membrane protein TerC family BEN31_14190 PF02342 TerD domain BEN31_14195 PF02342 TerD domain BEN31_14200 PF02342 TerD domain BEN31_14205 PF00296 Luciferase-like monooxygenase BEN31_14220 PF07486 Cell Wall Hydrolase BEN31_14225 PF11611 Domain of unknown function (DUF4352) BEN31_14225 PF17118 Domain of unknown function (DUF5105) BEN31_14240 PF12679 ABC-2 family transporter protein BEN31_14245 PF00005 ABC transporter BEN31_14250 PF04397 LytTr DNA-binding domain BEN31_14250 PF00072 Response regulator receiver domain BEN31_14255 PF14501 GHKL domain BEN31_14260 PF00248 Aldo/keto reductase family BEN31_14265 PF17118 Domain of unknown function (DUF5105) BEN31_14265 PF11611 Domain of unknown function (DUF4352) BEN31_14270 PF05225 helix-turn-helix, Psq domain BEN31_14270 PF02810 SEC-C motif BEN31_14275 PF08664 YcbB domain BEN31_14275 PF00072 Response regulator receiver domain BEN31_14280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_14285 PF04960 Glutaminase BEN31_14290 PF01235 Sodium:alanine symporter family BEN31_14295 PF00561 alpha/beta hydrolase fold BEN31_14310 PF13520 Amino acid permease BEN31_14315 PF13193 AMP-binding enzyme C-terminal domain BEN31_14315 PF00501 AMP-binding enzyme BEN31_14320 PF01047 MarR family BEN31_14325 PF13823 Alcohol dehydrogenase GroES-associated BEN31_14325 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_14325 PF00107 Zinc-binding dehydrogenase BEN31_14330 PF07883 Cupin domain BEN31_14335 PF00440 Bacterial regulatory proteins, tetR family BEN31_14340 PF01425 Amidase BEN31_14345 PF00082 Subtilase family BEN31_14365 PF07690 Major Facilitator Superfamily BEN31_14375 PF03551 Transcriptional regulator PadR-like family BEN31_14380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BEN31_14380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEN31_14385 PF02574 Homocysteine S-methyltransferase BEN31_14390 PF00324 Amino acid permease BEN31_14405 PF17936 Bacterial Ig domain BEN31_14405 PF00082 Subtilase family BEN31_14410 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_14410 PF00381 PTS HPr component phosphorylation site BEN31_14415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_14425 PF01074 Glycosyl hydrolases family 38 N-terminal domain BEN31_14425 PF07748 Glycosyl hydrolases family 38 C-terminal domain BEN31_14425 PF09261 Alpha mannosidase middle domain BEN31_14430 PF00480 ROK family BEN31_14435 PF08279 HTH domain BEN31_14435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_14435 PF00874 PRD domain BEN31_14435 PF05043 Mga helix-turn-helix domain BEN31_14450 PF00232 Glycosyl hydrolase family 1 BEN31_14455 PF02378 Phosphotransferase system, EIIC BEN31_14455 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN31_14455 PF00367 phosphotransferase system, EIIB BEN31_14460 PF00874 PRD domain BEN31_14460 PF03123 CAT RNA binding domain BEN31_14470 PF13520 Amino acid permease BEN31_14480 PF00465 Iron-containing alcohol dehydrogenase BEN31_14485 PF00248 Aldo/keto reductase family BEN31_14495 PF04463 Protein of unknown function (DUF523) BEN31_14505 PF01047 MarR family BEN31_14515 PF07690 Major Facilitator Superfamily BEN31_14520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN31_14520 PF09180 Prolyl-tRNA synthetase, C-terminal BEN31_14520 PF03129 Anticodon binding domain BEN31_14525 PF01925 Sulfite exporter TauE/SafE BEN31_14530 PF01206 Sulfurtransferase TusA BEN31_14535 PF00753 Metallo-beta-lactamase superfamily BEN31_14535 PF00581 Rhodanese-like domain BEN31_14540 PF00581 Rhodanese-like domain BEN31_14540 PF01206 Sulfurtransferase TusA BEN31_14545 PF00581 Rhodanese-like domain BEN31_14550 PF13686 DsrE/DsrF/DrsH-like family BEN31_14555 PF02583 Metal-sensitive transcriptional repressor BEN31_14570 PF00145 C-5 cytosine-specific DNA methylase BEN31_14570 PF01381 Helix-turn-helix BEN31_14575 PF03190 Protein of unknown function, DUF255 BEN31_14585 PF07690 Major Facilitator Superfamily BEN31_14590 PF03009 Glycerophosphoryl diester phosphodiesterase family BEN31_14595 PF00324 Amino acid permease BEN31_14610 PF00440 Bacterial regulatory proteins, tetR family BEN31_14610 PF17922 Tetracyclin repressor-like, C-terminal domain BEN31_14620 PF00005 ABC transporter BEN31_14630 PF04235 Protein of unknown function (DUF418) BEN31_14650 PF00005 ABC transporter BEN31_14650 PF13732 Domain of unknown function (DUF4162) BEN31_14690 PF01380 SIS domain BEN31_14695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEN31_14695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEN31_14695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEN31_14695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEN31_14700 PF07949 YbbR-like protein BEN31_14705 PF02457 DisA bacterial checkpoint controller nucleotide-binding BEN31_14710 PF13490 Putative zinc-finger BEN31_14715 PF08281 Sigma-70, region 4 BEN31_14715 PF04542 Sigma-70 region 2 BEN31_14720 PF00491 Arginase family BEN31_14750 PF13580 SIS domain BEN31_14755 PF01380 SIS domain BEN31_14755 PF01418 Helix-turn-helix domain, rpiR family BEN31_14760 PF02378 Phosphotransferase system, EIIC BEN31_14760 PF00367 phosphotransferase system, EIIB BEN31_14765 PF00144 Beta-lactamase BEN31_14770 PF00933 Glycosyl hydrolase family 3 N terminal domain BEN31_14770 PF01915 Glycosyl hydrolase family 3 C-terminal domain BEN31_14775 PF07075 Protein of unknown function (DUF1343) BEN31_14780 PF01758 Sodium Bile acid symporter family BEN31_14785 PF00916 Sulfate permease family BEN31_14785 PF01740 STAS domain BEN31_14815 PF01522 Polysaccharide deacetylase BEN31_14820 PF14089 KinB-signalling pathway activation in sporulation BEN31_14825 PF17898 Spore germination GerD central core domain BEN31_14830 PF10609 NUBPL iron-transfer P-loop NTPase BEN31_14835 PF01520 N-acetylmuramoyl-L-alanine amidase BEN31_14840 PF10730 Protein of unknown function (DUF2521) BEN31_14865 PF13302 Acetyltransferase (GNAT) domain BEN31_14870 PF00380 Ribosomal protein S9/S16 BEN31_14875 PF00572 Ribosomal protein L13 BEN31_14880 PF01416 tRNA pseudouridine synthase BEN31_14885 PF02361 Cobalt transport protein BEN31_14890 PF00005 ABC transporter BEN31_14895 PF00005 ABC transporter BEN31_14900 PF01196 Ribosomal protein L17 BEN31_14905 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BEN31_14905 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BEN31_14905 PF01000 RNA polymerase Rpb3/RpoA insert domain BEN31_14910 PF00411 Ribosomal protein S11 BEN31_14915 PF00416 Ribosomal protein S13/S18 BEN31_14920 PF00444 Ribosomal protein L36 BEN31_14925 PF01176 Translation initiation factor 1A / IF-1 BEN31_14935 PF00557 Metallopeptidase family M24 BEN31_14940 PF05191 Adenylate kinase, active site lid BEN31_14945 PF00344 SecY translocase BEN31_14950 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BEN31_14955 PF00327 Ribosomal protein L30p/L7e BEN31_14960 PF03719 Ribosomal protein S5, C-terminal domain BEN31_14960 PF00333 Ribosomal protein S5, N-terminal domain BEN31_14965 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BEN31_14970 PF00347 Ribosomal protein L6 BEN31_14975 PF00410 Ribosomal protein S8 BEN31_14980 PF00253 Ribosomal protein S14p/S29e BEN31_14985 PF00673 ribosomal L5P family C-terminus BEN31_14985 PF00281 Ribosomal protein L5 BEN31_14990 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BEN31_14990 PF00467 KOW motif BEN31_14995 PF00238 Ribosomal protein L14p/L23e BEN31_15000 PF00366 Ribosomal protein S17 BEN31_15005 PF00831 Ribosomal L29 protein BEN31_15010 PF00252 Ribosomal protein L16p/L10e BEN31_15015 PF00189 Ribosomal protein S3, C-terminal domain BEN31_15015 PF07650 KH domain BEN31_15020 PF00237 Ribosomal protein L22p/L17e BEN31_15025 PF00203 Ribosomal protein S19 BEN31_15030 PF00181 Ribosomal Proteins L2, RNA binding domain BEN31_15030 PF03947 Ribosomal Proteins L2, C-terminal domain BEN31_15035 PF00276 Ribosomal protein L23 BEN31_15040 PF00573 Ribosomal protein L4/L1 family BEN31_15045 PF00297 Ribosomal protein L3 BEN31_15050 PF00338 Ribosomal protein S10p/S20e BEN31_15055 PF12146 Serine aminopeptidase, S33 BEN31_15060 PF00009 Elongation factor Tu GTP binding domain BEN31_15060 PF03143 Elongation factor Tu C-terminal domain BEN31_15060 PF03144 Elongation factor Tu domain 2 BEN31_15065 PF14492 Elongation Factor G, domain II BEN31_15065 PF03144 Elongation factor Tu domain 2 BEN31_15065 PF00679 Elongation factor G C-terminus BEN31_15065 PF03764 Elongation factor G, domain IV BEN31_15065 PF00009 Elongation factor Tu GTP binding domain BEN31_15070 PF00177 Ribosomal protein S7p/S5e BEN31_15075 PF00164 Ribosomal protein S12/S23 BEN31_15080 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family BEN31_15085 PF05000 RNA polymerase Rpb1, domain 4 BEN31_15085 PF04997 RNA polymerase Rpb1, domain 1 BEN31_15085 PF04998 RNA polymerase Rpb1, domain 5 BEN31_15085 PF04983 RNA polymerase Rpb1, domain 3 BEN31_15085 PF00623 RNA polymerase Rpb1, domain 2 BEN31_15090 PF04563 RNA polymerase beta subunit BEN31_15090 PF00562 RNA polymerase Rpb2, domain 6 BEN31_15090 PF04565 RNA polymerase Rpb2, domain 3 BEN31_15090 PF04561 RNA polymerase Rpb2, domain 2 BEN31_15090 PF04560 RNA polymerase Rpb2, domain 7 BEN31_15090 PF10385 RNA polymerase beta subunit external 1 domain BEN31_15095 PF05175 Methyltransferase small domain BEN31_15100 PF16320 Ribosomal protein L7/L12 dimerisation domain BEN31_15100 PF00542 Ribosomal protein L7/L12 C-terminal domain BEN31_15105 PF00466 Ribosomal protein L10 BEN31_15110 PF00687 Ribosomal protein L1p/L10e family BEN31_15115 PF00298 Ribosomal protein L11, RNA binding domain BEN31_15115 PF03946 Ribosomal protein L11, N-terminal domain BEN31_15120 PF02357 Transcription termination factor nusG BEN31_15120 PF00467 KOW motif BEN31_15125 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BEN31_15130 PF08281 Sigma-70, region 4 BEN31_15130 PF04542 Sigma-70 region 2 BEN31_15135 PF05991 YacP-like NYN domain BEN31_15140 PF00588 SpoU rRNA Methylase family BEN31_15140 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEN31_15145 PF00636 Ribonuclease III domain BEN31_15150 PF09190 DALR domain BEN31_15150 PF01406 tRNA synthetases class I (C) catalytic domain BEN31_15155 PF00132 Bacterial transferase hexapeptide (six repeats) BEN31_15155 PF06426 Serine acetyltransferase, N-terminal BEN31_15160 PF00749 tRNA synthetases class I (E and Q), catalytic domain BEN31_15165 PF02542 YgbB family BEN31_15170 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BEN31_15180 PF02457 DisA bacterial checkpoint controller nucleotide-binding BEN31_15180 PF10635 DisA bacterial checkpoint controller linker region BEN31_15185 PF18073 Rubredoxin metal binding domain BEN31_15190 PF00004 ATPase family associated with various cellular activities (AAA) BEN31_15190 PF10431 C-terminal, D2-small domain, of ClpB protein BEN31_15190 PF02861 Clp amino terminal domain, pathogenicity island component BEN31_15190 PF17871 AAA lid domain BEN31_15190 PF07724 AAA domain (Cdc48 subfamily) BEN31_15195 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain BEN31_15200 PF02151 UvrB/uvrC motif BEN31_15205 PF17727 CtsR C-terminal dimerization domain BEN31_15205 PF05848 CtsR N-terminal HTH domain BEN31_15285 PF01336 OB-fold nucleic acid binding domain BEN31_15285 PF00152 tRNA synthetases class II (D, K and N) BEN31_15290 PF01207 Dihydrouridine synthase (Dus) BEN31_15295 PF01381 Helix-turn-helix BEN31_15300 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BEN31_15305 PF02152 Dihydroneopterin aldolase BEN31_15310 PF00809 Pterin binding enzyme BEN31_15315 PF01063 Amino-transferase class IV BEN31_15320 PF00117 Glutamine amidotransferase class-I BEN31_15325 PF00425 chorismate binding enzyme BEN31_15325 PF04715 Anthranilate synthase component I, N terminal region BEN31_15330 PF00291 Pyridoxal-phosphate dependent enzyme BEN31_15335 PF13145 PPIC-type PPIASE domain BEN31_15340 PF01430 Hsp33 protein BEN31_15345 PF03309 Type III pantothenate kinase BEN31_15350 PF00004 ATPase family associated with various cellular activities (AAA) BEN31_15350 PF17862 AAA+ lid domain BEN31_15350 PF01434 Peptidase family M41 BEN31_15350 PF06480 FtsH Extracellular BEN31_15360 PF11734 TilS substrate C-terminal domain BEN31_15360 PF09179 TilS substrate binding domain BEN31_15360 PF01171 PP-loop family BEN31_15365 PF00069 Protein kinase domain BEN31_15370 PF00092 von Willebrand factor type A domain BEN31_15375 PF07228 Stage II sporulation protein E (SpoIIE) BEN31_15390 PF00575 S1 RNA binding domain BEN31_15395 PF04977 Septum formation initiator BEN31_15400 PF09578 Spore cortex protein YabQ (Spore_YabQ) BEN31_15405 PF07873 YabP family BEN31_15410 PF01479 S4 domain BEN31_15415 PF03819 MazG nucleotide pyrophosphohydrolase domain BEN31_15415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEN31_15420 PF01943 Polysaccharide biosynthesis protein BEN31_15420 PF14667 Polysaccharide biosynthesis C-terminal domain BEN31_15425 PF15714 Stage V sporulation protein T C-terminal, transcription factor BEN31_15425 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN31_15430 PF00270 DEAD/DEAH box helicase BEN31_15430 PF17757 UvrB interaction domain BEN31_15430 PF02559 CarD-like/TRCF domain BEN31_15430 PF03461 TRCF domain BEN31_15430 PF00271 Helicase conserved C-terminal domain BEN31_15435 PF10955 Protein of unknown function (DUF2757) BEN31_15440 PF01195 Peptidyl-tRNA hydrolase BEN31_15445 PF01386 Ribosomal L25p family BEN31_15445 PF14693 Ribosomal protein TL5, C-terminal domain BEN31_15450 PF14572 Phosphoribosyl synthetase-associated domain BEN31_15450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BEN31_15455 PF00132 Bacterial transferase hexapeptide (six repeats) BEN31_15455 PF00483 Nucleotidyl transferase BEN31_15460 PF04026 SpoVG BEN31_15465 PF01042 Endoribonuclease L-PSP BEN31_15470 PF09182 Bacterial purine repressor, N-terminal BEN31_15470 PF00156 Phosphoribosyl transferase domain BEN31_15475 PF08544 GHMP kinases C terminal BEN31_15475 PF00288 GHMP kinases N terminal domain BEN31_15480 PF00269 Small, acid-soluble spore proteins, alpha/beta type BEN31_15485 PF06257 Biofilm formation stimulator VEG BEN31_15490 PF05582 YabG peptidase U57 BEN31_15495 PF00398 Ribosomal RNA adenine dimethylase BEN31_15500 PF13662 Toprim domain BEN31_15500 PF13331 Domain of unknown function (DUF4093) BEN31_15505 PF06725 3D domain BEN31_15505 PF03990 G5-linked-Ubiquitin-like domain BEN31_15505 PF07501 G5 domain BEN31_15510 PF01026 TatD related DNase BEN31_15515 PF01588 Putative tRNA binding domain BEN31_15515 PF09334 tRNA synthetases class I (M) BEN31_15515 PF08264 Anticodon-binding domain of tRNA BEN31_15520 PF18277 AbrB C-terminal domain BEN31_15520 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN31_15525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEN31_15530 PF01541 GIY-YIG catalytic domain BEN31_15535 PF05175 Methyltransferase small domain BEN31_15540 PF06156 Initiation control protein YabA BEN31_15545 PF04468 PSP1 C-terminal conserved region BEN31_15550 PF09115 DNA polymerase III, delta subunit, C terminal BEN31_15555 PF03885 Protein of unknown function (DUF327) BEN31_15560 PF06153 Cyclic-di-AMP receptor BEN31_15565 PF02223 Thymidylate kinase BEN31_15570 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BEN31_15570 PF01276 Orn/Lys/Arg decarboxylase, major domain BEN31_15575 PF05816 Toxic anion resistance protein (TelA) BEN31_15580 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein BEN31_15585 PF10764 Inhibitor of sigma-G Gin BEN31_15615 PF07441 SigmaK-factor processing regulatory protein BofA BEN31_15620 PF10704 Protein of unknown function (DUF2508) BEN31_15625 PF13662 Toprim domain BEN31_15625 PF02132 RecR protein BEN31_15630 PF02575 YbaB/EbfC DNA-binding family BEN31_15635 PF12169 DNA polymerase III subunits gamma and tau domain III BEN31_15645 PF14437 MafB19-like deaminase BEN31_15650 PF00857 Isochorismatase family BEN31_15655 PF00704 Glycosyl hydrolases family 18 BEN31_15655 PF01476 LysM domain BEN31_15660 PF01712 Deoxynucleoside kinase BEN31_15665 PF01712 Deoxynucleoside kinase BEN31_15675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_15680 PF02403 Seryl-tRNA synthetase N-terminal domain BEN31_15680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN31_15685 PF01174 SNO glutamine amidotransferase family BEN31_15690 PF01680 SOR/SNZ family BEN31_15695 PF00155 Aminotransferase class I and II BEN31_15695 PF00392 Bacterial regulatory proteins, gntR family BEN31_15700 PF07943 Penicillin-binding protein 5, C-terminal domain BEN31_15700 PF00768 D-alanyl-D-alanine carboxypeptidase BEN31_15705 PF00478 IMP dehydrogenase / GMP reductase domain BEN31_15705 PF00571 CBS domain BEN31_15710 PF14175 YaaC-like Protein BEN31_15740 PF00521 DNA gyrase/topoisomerase IV, subunit A BEN31_15740 PF03989 DNA gyrase C-terminal domain, beta-propeller BEN31_15745 PF01751 Toprim domain BEN31_15745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_15745 PF00986 DNA gyrase B subunit, carboxyl terminus BEN31_15745 PF00204 DNA gyrase B BEN31_15750 PF04025 Domain of unknown function (DUF370) BEN31_15755 PF02463 RecF/RecN/SMC N terminal domain BEN31_15765 PF02768 DNA polymerase III beta subunit, C-terminal domain BEN31_15765 PF02767 DNA polymerase III beta subunit, central domain BEN31_15765 PF00712 DNA polymerase III beta subunit, N-terminal domain BEN31_15770 PF08299 Bacterial dnaA protein helix-turn-helix BEN31_15770 PF00308 Bacterial dnaA protein BEN31_15770 PF11638 DnaA N-terminal domain BEN31_15775 PF00468 Ribosomal protein L34 BEN31_15780 PF00825 Ribonuclease P BEN31_15785 PF02096 60Kd inner membrane protein BEN31_15790 PF01424 R3H domain BEN31_15790 PF14804 Jag N-terminus BEN31_15795 PF01926 50S ribosome-binding GTPase BEN31_15795 PF12631 MnmE helical domain BEN31_15795 PF10396 GTP-binding protein TrmE N-terminus BEN31_15800 PF01134 Glucose inhibited division protein A BEN31_15800 PF13932 GidA associated domain BEN31_15805 PF02527 rRNA small subunit methyltransferase G BEN31_15810 PF02195 ParB-like nuclease domain BEN31_15810 PF17762 HTH domain found in ParB protein BEN31_15820 PF13614 AAA domain BEN31_15825 PF17762 HTH domain found in ParB protein BEN31_15825 PF02195 ParB-like nuclease domain BEN31_15830 PF06866 Protein of unknown function (DUF1256) BEN31_15850 PF06107 Bacterial protein of unknown function (DUF951) BEN31_15855 PF06071 Protein of unknown function (DUF933) BEN31_15855 PF01926 50S ribosome-binding GTPase BEN31_15860 PF01250 Ribosomal protein S6 BEN31_15865 PF00436 Single-strand binding protein family BEN31_15870 PF01084 Ribosomal protein S18 BEN31_15875 PF00571 CBS domain BEN31_15875 PF00005 ABC transporter BEN31_15880 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_15885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN31_15890 PF01738 Dienelactone hydrolase family BEN31_15895 PF03358 NADPH-dependent FMN reductase BEN31_15900 PF00199 Catalase BEN31_15900 PF06628 Catalase-related immune-responsive BEN31_15910 PF08281 Sigma-70, region 4 BEN31_15910 PF04542 Sigma-70 region 2 BEN31_15915 PF13739 Deacetylase PdaC BEN31_15915 PF11738 Protein of unknown function (DUF3298) BEN31_15920 PF02833 DHHA2 domain BEN31_15920 PF01368 DHH family BEN31_15925 PF09991 Predicted membrane protein (DUF2232) BEN31_15930 PF02272 DHHA1 domain BEN31_15930 PF01368 DHH family BEN31_15935 PF01281 Ribosomal protein L9, N-terminal domain BEN31_15935 PF03948 Ribosomal protein L9, C-terminal domain BEN31_15940 PF07690 Major Facilitator Superfamily BEN31_15945 PF14174 YycC-like protein BEN31_15950 PF00756 Putative esterase BEN31_15955 PF01497 Periplasmic binding protein BEN31_15960 PF12833 Helix-turn-helix domain BEN31_15960 PF01497 Periplasmic binding protein BEN31_15965 PF03621 MbtH-like protein BEN31_15970 PF00550 Phosphopantetheine attachment site BEN31_15970 PF00668 Condensation domain BEN31_15970 PF13193 AMP-binding enzyme C-terminal domain BEN31_15970 PF00975 Thioesterase domain BEN31_15970 PF00501 AMP-binding enzyme BEN31_15975 PF00857 Isochorismatase family BEN31_15975 PF00550 Phosphopantetheine attachment site BEN31_15980 PF00501 AMP-binding enzyme BEN31_15980 PF13193 AMP-binding enzyme C-terminal domain BEN31_15985 PF00425 chorismate binding enzyme BEN31_15990 PF00106 short chain dehydrogenase BEN31_15995 PF00756 Putative esterase BEN31_16005 PF16226 Domain of unknown function (DUF4885) BEN31_16010 PF00772 DnaB-like helicase N terminal domain BEN31_16010 PF03796 DnaB-like helicase C terminal domain BEN31_16015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN31_16020 PF00067 Cytochrome P450 BEN31_16025 PF00440 Bacterial regulatory proteins, tetR family BEN31_16030 PF00709 Adenylosuccinate synthetase BEN31_16035 PF04235 Protein of unknown function (DUF418) BEN31_16045 PF00578 AhpC/TSA family BEN31_16070 PF00486 Transcriptional regulatory protein, C terminal BEN31_16070 PF00072 Response regulator receiver domain BEN31_16075 PF13426 PAS domain BEN31_16075 PF00512 His Kinase A (phospho-acceptor) domain BEN31_16075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_16075 PF00672 HAMP domain BEN31_16080 PF07435 YycH protein BEN31_16085 PF09648 YycH protein BEN31_16090 PF00753 Metallo-beta-lactamase superfamily BEN31_16095 PF13180 PDZ domain BEN31_16100 PF00583 Acetyltransferase (GNAT) family BEN31_16105 PF00005 ABC transporter BEN31_16120 PF07155 ECF-type riboflavin transporter, S component BEN31_16125 PF00005 ABC transporter BEN31_16125 PF12558 ATP-binding cassette cobalt transporter BEN31_16130 PF02361 Cobalt transport protein BEN31_16135 PF14116 YyzF-like protein BEN31_16140 PF02590 Predicted SPOUT methyltransferase BEN31_16150 PF00082 Subtilase family BEN31_16150 PF05922 Peptidase inhibitor I9 BEN31_16155 PF03515 Colicin-like bacteriocin tRNase domain BEN31_16155 PF11429 Colicin D BEN31_16155 PF06958 S-type Pyocin BEN31_16170 PF16123 Hydroxyacylglutathione hydrolase C-terminus BEN31_16170 PF00753 Metallo-beta-lactamase superfamily BEN31_16175 PF01381 Helix-turn-helix BEN31_16180 PF00005 ABC transporter BEN31_16200 PF00392 Bacterial regulatory proteins, gntR family BEN31_16200 PF07702 UTRA domain BEN31_16205 PF00367 phosphotransferase system, EIIB BEN31_16205 PF02378 Phosphotransferase system, EIIC BEN31_16205 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN31_16210 PF00232 Glycosyl hydrolase family 1 BEN31_16225 PF04740 LXG domain of WXG superfamily BEN31_16225 PF14449 Pre-toxin TG BEN31_16225 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues BEN31_16240 PF07690 Major Facilitator Superfamily BEN31_16245 PF08501 Shikimate dehydrogenase substrate binding domain BEN31_16245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BEN31_16250 PF07690 Major Facilitator Superfamily BEN31_16260 PF00324 Amino acid permease BEN31_16275 PF00293 NUDIX domain BEN31_16295 PF02378 Phosphotransferase system, EIIC BEN31_16295 PF00367 phosphotransferase system, EIIB BEN31_16295 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN31_16300 PF00232 Glycosyl hydrolase family 1 BEN31_16305 PF00874 PRD domain BEN31_16305 PF03123 CAT RNA binding domain BEN31_16310 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_16320 PF00005 ABC transporter BEN31_16330 PF07690 Major Facilitator Superfamily BEN31_16335 PF00440 Bacterial regulatory proteins, tetR family BEN31_16335 PF17922 Tetracyclin repressor-like, C-terminal domain BEN31_16340 PF13556 PucR C-terminal helix-turn-helix domain BEN31_16340 PF17853 GGDEF-like domain BEN31_16340 PF05651 Putative sugar diacid recognition BEN31_16345 PF02447 GntP family permease BEN31_16350 PF02595 Glycerate kinase family BEN31_16355 PF08274 PhnA Zinc-Ribbon BEN31_16355 PF03831 PhnA domain BEN31_16360 PF00005 ABC transporter BEN31_16375 PF03600 Citrate transporter BEN31_16380 PF08532 Beta-galactosidase trimerisation domain BEN31_16380 PF08533 Beta-galactosidase C-terminal domain BEN31_16380 PF02449 Beta-galactosidase BEN31_16385 PF07745 Glycosyl hydrolase family 53 BEN31_16390 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_16395 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_16400 PF13416 Bacterial extracellular solute-binding protein BEN31_16405 PF00356 Bacterial regulatory proteins, lacI family BEN31_16410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_16410 PF03466 LysR substrate binding domain BEN31_16430 PF01418 Helix-turn-helix domain, rpiR family BEN31_16430 PF01380 SIS domain BEN31_16435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN31_16435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN31_16440 PF02447 GntP family permease BEN31_16445 PF08713 DNA alkylation repair enzyme BEN31_16450 PF00324 Amino acid permease BEN31_16455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_16460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEN31_16460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN31_16465 PF13411 MerR HTH family regulatory protein BEN31_16475 PF00072 Response regulator receiver domain BEN31_16475 PF00196 Bacterial regulatory proteins, luxR family BEN31_16490 PF01757 Acyltransferase family BEN31_16500 PF04198 Putative sugar-binding domain BEN31_16505 PF01791 DeoC/LacD family aldolase BEN31_16510 PF07662 Na+ dependent nucleoside transporter C-terminus BEN31_16510 PF01773 Na+ dependent nucleoside transporter N-terminus BEN31_16515 PF02885 Glycosyl transferase family, helical bundle domain BEN31_16515 PF00591 Glycosyl transferase family, a/b domain BEN31_16515 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BEN31_16520 PF01047 MarR family BEN31_16525 PF00881 Nitroreductase family BEN31_16530 PF03992 Antibiotic biosynthesis monooxygenase BEN31_16535 PF00801 PKD domain BEN31_16535 PF05547 Immune inhibitor A peptidase M6 BEN31_16565 PF03070 TENA/THI-4/PQQC family BEN31_16570 PF09819 ABC-type cobalt transport system, permease component BEN31_16575 PF00005 ABC transporter BEN31_16580 PF02361 Cobalt transport protein BEN31_16590 PF09234 Domain of unknown function (DUF1963) BEN31_16595 PF00874 PRD domain BEN31_16595 PF03123 CAT RNA binding domain BEN31_16600 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN31_16600 PF00367 phosphotransferase system, EIIB BEN31_16600 PF02378 Phosphotransferase system, EIIC BEN31_16605 PF00232 Glycosyl hydrolase family 1 BEN31_16610 PF01717 Cobalamin-independent synthase, Catalytic domain BEN31_16625 PF01546 Peptidase family M20/M25/M40 BEN31_16625 PF07687 Peptidase dimerisation domain BEN31_16630 PF06013 Proteins of 100 residues with WXG BEN31_16645 PF17353 Family of unknown function (DUF5381) BEN31_16655 PF01381 Helix-turn-helix BEN31_16660 PF17763 Glutaminase/Asparaginase C-terminal domain BEN31_16660 PF00710 Asparaginase, N-terminal BEN31_16665 PF10415 Fumarase C C-terminus BEN31_16665 PF00206 Lyase BEN31_16670 PF03553 Na+/H+ antiporter family BEN31_16695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_16695 PF08279 HTH domain BEN31_16695 PF05043 Mga helix-turn-helix domain BEN31_16695 PF00874 PRD domain BEN31_16700 PF02378 Phosphotransferase system, EIIC BEN31_16710 PF03786 D-mannonate dehydratase (UxuA) BEN31_16715 PF00232 Glycosyl hydrolase family 1 BEN31_16720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_16725 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BEN31_16730 PF01522 Polysaccharide deacetylase BEN31_16735 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN31_16740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEN31_16740 PF01872 RibD C-terminal domain BEN31_16745 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BEN31_16745 PF00925 GTP cyclohydrolase II BEN31_16750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN31_16755 PF01638 HxlR-like helix-turn-helix BEN31_16760 PF05031 Iron Transport-associated domain BEN31_16765 PF05031 Iron Transport-associated domain BEN31_16775 PF01497 Periplasmic binding protein BEN31_16780 PF01032 FecCD transport family BEN31_16785 PF00005 ABC transporter BEN31_16790 PF04203 Sortase domain BEN31_16800 PF01032 FecCD transport family BEN31_16805 PF00005 ABC transporter BEN31_16810 PF01654 Cytochrome bd terminal oxidase subunit I BEN31_16815 PF02322 Cytochrome bd terminal oxidase subunit II BEN31_16820 PF00005 ABC transporter BEN31_16820 PF00664 ABC transporter transmembrane region BEN31_16825 PF00664 ABC transporter transmembrane region BEN31_16825 PF00005 ABC transporter BEN31_16830 PF00544 Pectate lyase BEN31_16835 PF04542 Sigma-70 region 2 BEN31_16835 PF08281 Sigma-70, region 4 BEN31_16850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEN31_16850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BEN31_16865 PF05043 Mga helix-turn-helix domain BEN31_16865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN31_16865 PF00874 PRD domain BEN31_16865 PF08279 HTH domain BEN31_16870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN31_16875 PF02378 Phosphotransferase system, EIIC BEN31_16880 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BEN31_16885 PF02056 Family 4 glycosyl hydrolase BEN31_16885 PF11975 Family 4 glycosyl hydrolase C-terminal domain BEN31_16900 PF01063 Amino-transferase class IV BEN31_16905 PF13229 Right handed beta helix region BEN31_16910 PF13407 Periplasmic binding protein domain BEN31_16915 PF00005 ABC transporter BEN31_16920 PF02653 Branched-chain amino acid transport system / permease component BEN31_16925 PF04607 Region found in RelA / SpoT proteins BEN31_16930 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_16935 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_16940 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_16945 PF00005 ABC transporter BEN31_16950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN31_16955 PF10672 S-adenosylmethionine-dependent methyltransferase BEN31_16955 PF17785 PUA-like domain BEN31_16960 PF04172 LrgB-like family BEN31_16965 PF03788 LrgA family BEN31_16970 PF03466 LysR substrate binding domain BEN31_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_16975 PF02110 Hydroxyethylthiazole kinase family BEN31_16980 PF02581 Thiamine monophosphate synthase BEN31_16990 PF00474 Sodium:solute symporter family BEN31_16995 PF04341 Protein of unknown function, DUF485 BEN31_17015 PF04138 GtrA-like protein BEN31_17030 PF10509 Galactokinase galactose-binding signature BEN31_17030 PF00288 GHMP kinases N terminal domain BEN31_17030 PF08544 GHMP kinases C terminal BEN31_17035 PF16363 GDP-mannose 4,6 dehydratase BEN31_17040 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BEN31_17040 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BEN31_17050 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BEN31_17050 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BEN31_17055 PF00115 Cytochrome C and Quinol oxidase polypeptide I BEN31_17060 PF00510 Cytochrome c oxidase subunit III BEN31_17065 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BEN31_17070 PF17368 Spore morphogenesis and germination YwcE BEN31_17075 PF01098 Cell cycle protein BEN31_17080 PF00881 Nitroreductase family BEN31_17085 PF00296 Luciferase-like monooxygenase BEN31_17095 PF13860 FlgD Ig-like domain BEN31_17095 PF00082 Subtilase family BEN31_17095 PF02225 PA domain BEN31_17095 PF05922 Peptidase inhibitor I9 BEN31_17105 PF00874 PRD domain BEN31_17105 PF03123 CAT RNA binding domain BEN31_17110 PF02378 Phosphotransferase system, EIIC BEN31_17110 PF00367 phosphotransferase system, EIIB BEN31_17115 PF00251 Glycosyl hydrolases family 32 N-terminal domain BEN31_17115 PF08244 Glycosyl hydrolases family 32 C terminal BEN31_17130 PF08543 Phosphomethylpyrimidine kinase BEN31_17140 PF00535 Glycosyl transferase family 2 BEN31_17145 PF03167 Uracil DNA glycosylase superfamily BEN31_17150 PF00171 Aldehyde dehydrogenase family BEN31_17155 PF17261 Family of unknown function (DUF5327) BEN31_17160 PF00860 Permease family BEN31_17165 PF04241 Protein of unknown function (DUF423) BEN31_17175 PF09671 Spore coat protein (Spore_GerQ) BEN31_17185 PF00535 Glycosyl transferase family 2 BEN31_17190 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BEN31_17195 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEN31_17200 PF00583 Acetyltransferase (GNAT) family BEN31_17205 PF03102 NeuB family BEN31_17205 PF08666 SAF domain BEN31_17210 PF02348 Cytidylyltransferase BEN31_17215 PF04101 Glycosyltransferase family 28 C-terminal domain BEN31_17220 PF00483 Nucleotidyl transferase BEN31_17225 PF16363 GDP-mannose 4,6 dehydratase BEN31_17230 PF04321 RmlD substrate binding domain BEN31_17235 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BEN31_17245 PF00155 Aminotransferase class I and II BEN31_17260 PF07883 Cupin domain BEN31_17270 PF07690 Major Facilitator Superfamily BEN31_17275 PF01037 Lrp/AsnC ligand binding domain BEN31_17280 PF07690 Major Facilitator Superfamily BEN31_17290 PF01515 Phosphate acetyl/butaryl transferase BEN31_17325 PF03099 Biotin/lipoate A/B protein ligase family BEN31_17340 PF07293 Protein of unknown function (DUF1450) BEN31_17345 PF01966 HD domain BEN31_17360 PF01361 Tautomerase enzyme BEN31_17365 PF02163 Peptidase family M50 BEN31_17370 PF08741 YwhD family BEN31_17375 PF00905 Penicillin binding protein transpeptidase domain BEN31_17375 PF00912 Transglycosylase BEN31_17380 PF17284 Spermidine synthase tetramerisation domain BEN31_17385 PF00491 Arginase family BEN31_17395 PF09148 Domain of unknown function (DUF1934) BEN31_17400 PF00750 tRNA synthetases class I (R) BEN31_17400 PF03485 Arginyl tRNA synthetase N terminal domain BEN31_17400 PF05746 DALR anticodon binding domain BEN31_17405 PF17676 LD-carboxypeptidase C-terminal domain BEN31_17405 PF02016 LD-carboxypeptidase N-terminal domain BEN31_17410 PF13091 PLD-like domain BEN31_17410 PF13396 Phospholipase_D-nuclease N-terminal BEN31_17415 PF00664 ABC transporter transmembrane region BEN31_17415 PF00005 ABC transporter BEN31_17420 PF17676 LD-carboxypeptidase C-terminal domain BEN31_17420 PF02016 LD-carboxypeptidase N-terminal domain BEN31_17430 PF03851 UV-endonuclease UvdE BEN31_17435 PF13091 PLD-like domain BEN31_17440 PF13183 4Fe-4S dicluster domain BEN31_17440 PF02754 Cysteine-rich domain BEN31_17445 PF02803 Thiolase, C-terminal domain BEN31_17445 PF00108 Thiolase, N-terminal domain BEN31_17450 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BEN31_17450 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BEN31_17455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN31_17455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN31_17455 PF02770 Acyl-CoA dehydrogenase, middle domain BEN31_17460 PF02770 Acyl-CoA dehydrogenase, middle domain BEN31_17460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN31_17460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN31_17470 PF05066 HB1, ASXL, restriction endonuclease HTH domain BEN31_17475 PF00117 Glutamine amidotransferase class-I BEN31_17475 PF06418 CTP synthase N-terminus BEN31_17480 PF10740 Domain of unknown function (DUF2529) BEN31_17485 PF00072 Response regulator receiver domain BEN31_17490 PF01116 Fructose-bisphosphate aldolase class-II BEN31_17495 PF00923 Transaldolase/Fructose-6-phosphate aldolase BEN31_17500 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BEN31_17505 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BEN31_17510 PF07498 Rho termination factor, N-terminal domain BEN31_17510 PF07497 Rho termination factor, RNA-binding domain BEN31_17510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN31_17515 PF01197 Ribosomal protein L31 BEN31_17520 PF00265 Thymidine kinase BEN31_17525 PF03949 Malic enzyme, NAD binding domain BEN31_17525 PF00390 Malic enzyme, N-terminal domain BEN31_17530 PF03547 Membrane transport protein BEN31_17535 PF13411 MerR HTH family regulatory protein BEN31_17540 PF03462 PCRF domain BEN31_17540 PF00472 RF-1 domain BEN31_17545 PF17827 PrmC N-terminal domain BEN31_17545 PF05175 Methyltransferase small domain BEN31_17555 PF09551 Stage II sporulation protein R (spore_II_R) BEN31_17565 PF01300 Telomere recombination BEN31_17565 PF03481 Putative GTP-binding controlling metal-binding BEN31_17570 PF02659 Putative manganese efflux pump BEN31_17575 PF01451 Low molecular weight phosphotyrosine protein phosphatase BEN31_17580 PF02502 Ribose/Galactose Isomerase BEN31_17585 PF04260 Protein of unknown function (DUF436) BEN31_17590 PF00464 Serine hydroxymethyltransferase BEN31_17600 PF03899 ATP synthase I chain BEN31_17605 PF00119 ATP synthase A chain BEN31_17610 PF00137 ATP synthase subunit C BEN31_17615 PF00430 ATP synthase B/B' CF(0) BEN31_17620 PF00213 ATP synthase delta (OSCP) subunit BEN31_17625 PF00306 ATP synthase alpha/beta chain, C terminal domain BEN31_17625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN31_17625 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEN31_17630 PF00231 ATP synthase BEN31_17635 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEN31_17635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN31_17640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BEN31_17640 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BEN31_17650 PF06612 Protein of unknown function (DUF1146) BEN31_17655 PF08680 TATA-box binding BEN31_17660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BEN31_17665 PF08486 Stage II sporulation protein BEN31_17670 PF00092 von Willebrand factor type A domain BEN31_17675 PF00092 von Willebrand factor type A domain BEN31_17680 PF00384 Molybdopterin oxidoreductase BEN31_17685 PF07690 Major Facilitator Superfamily BEN31_17690 PF02634 FdhD/NarQ family BEN31_17695 PF04055 Radical SAM superfamily BEN31_17695 PF06463 Molybdenum Cofactor Synthesis C BEN31_17700 PF00253 Ribosomal protein S14p/S29e BEN31_17705 PF07683 Cobalamin synthesis protein cobW C-terminal domain BEN31_17705 PF02492 CobW/HypB/UreG, nucleotide-binding domain BEN31_17730 PF00005 ABC transporter BEN31_17745 PF00583 Acetyltransferase (GNAT) family BEN31_17750 PF01551 Peptidase family M23 BEN31_17755 PF00543 Nitrogen regulatory protein P-II BEN31_17760 PF00909 Ammonium Transporter Family BEN31_17765 PF00005 ABC transporter BEN31_17770 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_17775 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN31_17780 PF07690 Major Facilitator Superfamily BEN31_17785 PF01569 PAP2 superfamily BEN31_17790 PF07690 Major Facilitator Superfamily BEN31_17795 PF01047 MarR family BEN31_17800 PF12116 Stage III sporulation protein D BEN31_17810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN31_17810 PF00460 Flagella basal body rod protein BEN31_17815 PF00460 Flagella basal body rod protein BEN31_17815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN31_17820 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_17825 PF07977 FabA-like domain BEN31_17830 PF01741 Large-conductance mechanosensitive channel, MscL BEN31_17835 PF14183 YwpF-like protein BEN31_17850 PF13426 PAS domain BEN31_17850 PF01740 STAS domain BEN31_17855 PF00271 Helicase conserved C-terminal domain BEN31_17855 PF00176 SNF2 family N-terminal domain BEN31_17855 PF12419 SNF2 Helicase protein BEN31_17860 PF04434 SWIM zinc finger BEN31_17865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEN31_17865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEN31_17865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEN31_17870 PF02417 Chromate transporter BEN31_17875 PF02417 Chromate transporter BEN31_17880 PF13404 AsnC-type helix-turn-helix domain BEN31_17880 PF01037 Lrp/AsnC ligand binding domain BEN31_17885 PF03306 Alpha-acetolactate decarboxylase BEN31_17890 PF00205 Thiamine pyrophosphate enzyme, central domain BEN31_17890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN31_17890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN31_17895 PF03466 LysR substrate binding domain BEN31_17895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN31_17900 PF01613 Flavin reductase like domain BEN31_17905 PF13407 Periplasmic binding protein domain BEN31_17910 PF02653 Branched-chain amino acid transport system / permease component BEN31_17915 PF00005 ABC transporter BEN31_17920 PF05025 RbsD / FucU transport protein family BEN31_17925 PF00294 pfkB family carbohydrate kinase BEN31_17930 PF00356 Bacterial regulatory proteins, lacI family BEN31_17945 PF03323 Bacillus/Clostridium GerA spore germination protein BEN31_17950 PF08245 Mur ligase middle domain BEN31_17955 PF14102 Capsule biosynthesis CapC BEN31_17960 PF09587 Bacterial capsule synthesis protein PGA_cap BEN31_17965 PF00877 NlpC/P60 family BEN31_17975 PF03816 Cell envelope-related transcriptional attenuator domain BEN31_17980 PF00083 Sugar (and other) transporter BEN31_17985 PF00534 Glycosyl transferases group 1 BEN31_17985 PF00535 Glycosyl transferase family 2 BEN31_17990 PF05504 Spore germination B3/ GerAC like, C-terminal BEN31_17995 PF03845 Spore germination protein BEN31_18000 PF03323 Bacillus/Clostridium GerA spore germination protein BEN31_18010 PF04962 KduI/IolB family BEN31_18015 PF00356 Bacterial regulatory proteins, lacI family BEN31_18020 PF00294 pfkB family carbohydrate kinase BEN31_18025 PF01081 KDPG and KHG aldolase BEN31_18030 PF00583 Acetyltransferase (GNAT) family BEN31_18040 PF06580 Histidine kinase BEN31_18040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_18040 PF00672 HAMP domain BEN31_18040 PF02743 Cache domain BEN31_18045 PF00196 Bacterial regulatory proteins, luxR family BEN31_18045 PF00072 Response regulator receiver domain BEN31_18050 PF01547 Bacterial extracellular solute-binding protein BEN31_18055 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_18060 PF00528 Binding-protein-dependent transport system inner membrane component BEN31_18065 PF01238 Phosphomannose isomerase type I BEN31_18070 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BEN31_18070 PF08239 Bacterial SH3 domain BEN31_18070 PF05036 Sporulation related domain BEN31_18075 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BEN31_18080 PF03808 Glycosyl transferase WecB/TagA/CpsF family BEN31_18085 PF01467 Cytidylyltransferase-like BEN31_18090 PF09318 Glycosyl transferase 1 domain A BEN31_18090 PF00534 Glycosyl transferases group 1 BEN31_18095 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BEN31_18100 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BEN31_18100 PF00535 Glycosyl transferase family 2 BEN31_18105 PF01061 ABC-2 type transporter BEN31_18110 PF00005 ABC transporter BEN31_18120 PF00483 Nucleotidyl transferase BEN31_18125 PF02350 UDP-N-acetylglucosamine 2-epimerase BEN31_18130 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BEN31_18135 PF16912 Glucose dehydrogenase C-terminus BEN31_18135 PF08240 Alcohol dehydrogenase GroES-like domain BEN31_18140 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BEN31_18145 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase BEN31_18160 PF03816 Cell envelope-related transcriptional attenuator domain BEN31_18170 PF04122 Putative cell wall binding repeat 2 BEN31_18170 PF08486 Stage II sporulation protein BEN31_18175 PF01520 N-acetylmuramoyl-L-alanine amidase BEN31_18175 PF04122 Putative cell wall binding repeat 2 BEN31_18185 PF02397 Bacterial sugar transferase BEN31_18190 PF14667 Polysaccharide biosynthesis C-terminal domain BEN31_18190 PF01943 Polysaccharide biosynthesis protein BEN31_18195 PF00534 Glycosyl transferases group 1 BEN31_18195 PF13439 Glycosyltransferase Family 4 BEN31_18200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEN31_18200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEN31_18200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEN31_18205 PF16363 GDP-mannose 4,6 dehydratase BEN31_18210 PF04932 O-Antigen ligase BEN31_18215 PF02706 Chain length determinant protein BEN31_18220 PF00535 Glycosyl transferase family 2 BEN31_18230 PF00953 Glycosyl transferase family 4 BEN31_18235 PF03816 Cell envelope-related transcriptional attenuator domain BEN31_18240 PF09186 Domain of unknown function (DUF1949) BEN31_18240 PF01205 Uncharacterized protein family UPF0029 BEN31_18245 PF05384 Sensor protein DegS BEN31_18245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_18245 PF07730 Histidine kinase BEN31_18250 PF00072 Response regulator receiver domain BEN31_18250 PF00196 Bacterial regulatory proteins, luxR family BEN31_18255 PF02645 Uncharacterised protein, DegV family COG1307 BEN31_18260 PF00271 Helicase conserved C-terminal domain BEN31_18260 PF04851 Type III restriction enzyme, res subunit BEN31_18265 PF10719 Late competence development protein ComFB BEN31_18285 PF05130 FlgN protein BEN31_18290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN31_18290 PF00460 Flagella basal body rod protein BEN31_18295 PF00669 Bacterial flagellin N-terminal helical region BEN31_18295 PF00700 Bacterial flagellin C-terminal helical region BEN31_18305 PF02623 FliW protein BEN31_18310 PF02599 Global regulator protein family BEN31_18315 PF03646 FlaG protein BEN31_18320 PF07195 Flagellar hook-associated protein 2 C-terminus BEN31_18320 PF07196 Flagellin hook IN motif BEN31_18320 PF02465 Flagellar hook-associated protein 2 N-terminus BEN31_18325 PF02561 Flagellar protein FliS BEN31_18340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN31_18340 PF00672 HAMP domain BEN31_18340 PF02743 Cache domain BEN31_18345 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BEN31_18345 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus BEN31_18350 PF02810 SEC-C motif BEN31_18350 PF07517 SecA DEAD-like domain BEN31_18350 PF01043 SecA preprotein cross-linking domain BEN31_18350 PF07516 SecA Wing and Scaffold domain BEN31_18355 PF00472 RF-1 domain BEN31_18355 PF03462 PCRF domain BEN31_18370 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) BEN31_18370 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 BEN31_18375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BEN31_18380 PF00005 ABC transporter BEN31_18385 PF18075 FtsX extracellular domain BEN31_18385 PF02687 FtsX-like permease family BEN31_18390 PF00877 NlpC/P60 family BEN31_18395 PF01925 Sulfite exporter TauE/SafE BEN31_18400 PF01471 Putative peptidoglycan binding domain BEN31_18400 PF03572 Peptidase family S41 BEN31_18400 PF17820 PDZ domain BEN31_18405 PF17423 Swarming motility protein BEN31_18410 PF17820 PDZ domain BEN31_18415 PF01638 HxlR-like helix-turn-helix BEN31_18420 PF00881 Nitroreductase family BEN31_18425 PF00324 Amino acid permease BEN31_18430 PF00989 PAS fold BEN31_18430 PF00512 His Kinase A (phospho-acceptor) domain BEN31_18430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN31_18430 PF16736 Single Cache-like BEN31_18435 PF00072 Response regulator receiver domain BEN31_18435 PF00486 Transcriptional regulatory protein, C terminal BEN31_18445 PF07690 Major Facilitator Superfamily BEN31_18450 PF00440 Bacterial regulatory proteins, tetR family BEN31_18455 PF00391 PEP-utilising enzyme, mobile domain BEN31_18455 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BEN31_18465 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) BEN31_18470 PF17757 UvrB interaction domain BEN31_18470 PF12344 Ultra-violet resistance protein B BEN31_18470 PF02151 UvrB/uvrC motif BEN31_18470 PF04851 Type III restriction enzyme, res subunit BEN31_18470 PF00271 Helicase conserved C-terminal domain BEN31_18475 PF17760 UvrA interaction domain BEN31_18475 PF17755 UvrA DNA-binding domain BEN31_18475 PF00005 ABC transporter BEN31_18490 PF13349 Putative adhesin BEN31_18495 PF04024 PspC domain BEN31_18500 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BEN31_18505 PF00149 Calcineurin-like phosphoesterase BEN31_18515 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BEN31_18520 PF01979 Amidohydrolase family BEN31_18525 PF02603 HPr Serine kinase N terminus BEN31_18525 PF07475 HPr Serine kinase C-terminal domain BEN31_18530 PF01790 Prolipoprotein diacylglyceryl transferase BEN31_18535 PF07670 Nucleoside recognition BEN31_18540 PF13419 Haloacid dehalogenase-like hydrolase BEN31_18545 PF14602 Hexapeptide repeat of succinyl-transferase BEN31_18550 PF02082 Transcriptional regulator BEN31_18555 PF13460 NAD(P)H-binding BEN31_18560 PF13529 Peptidase_C39 like family BEN31_18565 PF13393 Histidyl-tRNA synthetase BEN31_18570 PF01634 ATP phosphoribosyltransferase BEN31_18575 PF00815 Histidinol dehydrogenase BEN31_18580 PF00475 Imidazoleglycerol-phosphate dehydratase BEN31_18585 PF00117 Glutamine amidotransferase class-I BEN31_18590 PF00977 Histidine biosynthesis protein BEN31_18595 PF00977 Histidine biosynthesis protein BEN31_18600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BEN31_18600 PF01502 Phosphoribosyl-AMP cyclohydrolase BEN31_18610 PF00877 NlpC/P60 family BEN31_18615 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN31_18620 PF00293 NUDIX domain BEN31_18625 PF03668 P-loop ATPase protein family BEN31_18630 PF01933 Uncharacterised protein family UPF0052 BEN31_18635 PF10298 WhiA N-terminal LAGLIDADG-like domain BEN31_18635 PF14527 WhiA LAGLIDADG-like domain BEN31_18635 PF02650 WhiA C-terminal HTH domain BEN31_18640 PF00381 PTS HPr component phosphorylation site BEN31_18645 PF00797 N-acetyltransferase BEN31_18650 PF00545 ribonuclease BEN31_18655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN31_18655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN31_18660 PF00484 Carbonic anhydrase BEN31_18665 PF01740 STAS domain BEN31_18665 PF00916 Sulfate permease family BEN31_18670 PF03819 MazG nucleotide pyrophosphohydrolase domain BEN31_18675 PF03641 Possible lysine decarboxylase BEN31_18680 PF00574 Clp protease BEN31_18690 PF02899 Phage integrase, N-terminal SAM-like domain BEN31_18690 PF00589 Phage integrase family BEN31_18755 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_18755 PF13181 Tetratricopeptide repeat BEN31_18760 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_18760 PF13181 Tetratricopeptide repeat BEN31_18785 PF18801 response regulator aspartate phosphatase H, N terminal BEN31_18785 PF13181 Tetratricopeptide repeat BEN31_18790 PF01446 Replication protein