locus-tag	class	description
BEN31_00055	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BEN31_00055	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BEN31_00105	COG1780	Probably involved in ribonucleotide reductase function
BEN31_00110	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BEN31_00115	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BEN31_00135	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
BEN31_00235	COG0582	viral genome integration into host DNA
BEN31_00315	COG1705	Flagellar rod assembly protein muramidase FlgJ
BEN31_00345	COG5632	N-Acetylmuramoyl-L-alanine amidase
BEN31_00345	COG3409	Peptidoglycan-binding domain 1 protein
BEN31_00380	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_00385	COG1819	glycosyl
BEN31_00390	COG0747	negative chemotaxis
BEN31_00395	COG0601	transmembrane transport
BEN31_00410	COG1124	(ABC) transporter
BEN31_00420	COG0726	polysaccharide deacetylase
BEN31_00425	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_00430	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_00435	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_00445	COG1396	sequence-specific DNA binding
BEN31_00450	COG3944	biosynthesis protein
BEN31_00455	COG0489	protein tyrosine kinase activity
BEN31_00460	COG1086	Polysaccharide biosynthesis protein
BEN31_00465	COG0438	transferase activity, transferring glycosyl groups
BEN31_00470	COG1215	transferase activity, transferring glycosyl groups
BEN31_00475	COG0438	transferase activity, transferring glycosyl groups
BEN31_00485	COG1216	Glycosyl transferase, family 2
BEN31_00490	COG5039	Polysaccharide pyruvyl transferase
BEN31_00495	COG2244	polysaccharide biosynthetic process
BEN31_00500	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BEN31_00505	COG0110	maltose O-acetyltransferase activity
BEN31_00510	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BEN31_00515	COG0747	negative chemotaxis
BEN31_00520	COG0601	transmembrane transport
BEN31_00525	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BEN31_00530	COG0444	Belongs to the ABC transporter superfamily
BEN31_00535	COG4608	Belongs to the ABC transporter superfamily
BEN31_00540	COG0534	Mate efflux family protein
BEN31_00550	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
BEN31_00555	COG2186	Transcriptional regulator
BEN31_00560	COG3829	transcription factor binding
BEN31_00565	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BEN31_00570	COG0833	amino acid
BEN31_00575	COG2390	Transcriptional regulator
BEN31_00580	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BEN31_00585	COG0126	phosphoglycerate kinase activity
BEN31_00590	COG0149	triose-phosphate isomerase activity
BEN31_00595	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BEN31_00600	COG0148	phosphopyruvate hydratase activity
BEN31_00610	COG1131	(ABC) transporter
BEN31_00630	COG0456	acetyltransferase
BEN31_00640	COG2095	MarC family integral membrane protein
BEN31_00645	COG1510	regulation of RNA biosynthetic process
BEN31_00650	COG0517	IMP dehydrogenase activity
BEN31_00650	COG1125	glycine betaine transport
BEN31_00655	COG1174	glycine betaine transport
BEN31_00660	COG1732	Glycine betaine
BEN31_00665	COG1174	glycine betaine transport
BEN31_00670	COG1733	regulation of RNA biosynthetic process
BEN31_00675	COG1396	sequence-specific DNA binding
BEN31_00680	COG1396	sequence-specific DNA binding
BEN31_00685	COG1476	TRANSCRIPTIONal
BEN31_00690	COG2002	toxin-antitoxin pair type II binding
BEN31_00695	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BEN31_00700	COG1647	Serine aminopeptidase, S33
BEN31_00705	COG0557	exoribonuclease II activity
BEN31_00710	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BEN31_00795	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BEN31_00835	COG4626	Terminase
BEN31_00835	COG1802	Transcriptional regulator
BEN31_00915	COG3942	CHAP domain
BEN31_00915	COG1705	Flagellar rod assembly protein muramidase FlgJ
BEN31_00940	COG4824	toxin secretion phage lysis holin
BEN31_00945	COG0860	N-Acetylmuramoyl-L-alanine amidase
BEN31_00975	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BEN31_00985	COG3706	GGDEF domain
BEN31_00985	COG0745	RESPONSE REGULATOR receiver
BEN31_00995	COG1937	Protein conserved in bacteria
BEN31_01000	COG2608	mercury ion transmembrane transporter activity
BEN31_01005	COG2217	Heavy metal translocating P-type atpase
BEN31_01015	COG1027	Aspartate ammonia-lyase
BEN31_01020	COG4191	Histidine kinase
BEN31_01025	COG0784	Response regulator, receiver
BEN31_01030	COG3226	Transcriptional regulator
BEN31_01040	COG0803	Belongs to the bacterial solute-binding protein 9 family
BEN31_01045	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BEN31_01050	COG1121	(ABC) transporter
BEN31_01055	COG2217	Heavy metal translocating P-type atpase
BEN31_01060	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BEN31_01065	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
BEN31_01070	COG2860	membrane
BEN31_01080	COG0025	NhaP-type Na H and K H
BEN31_01085	COG1940	carbohydrate kinase activity
BEN31_01090	COG0656	L-ascorbic acid biosynthetic process
BEN31_01095	COG4149	molybdate abc transporter
BEN31_01100	COG0725	ABC transporter, periplasmic molybdate-binding protein
BEN31_01105	COG1368	sulfuric ester hydrolase activity
BEN31_01110	COG1988	membrane-bound metal-dependent
BEN31_01125	COG0531	amino acid
BEN31_01130	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_01135	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_01140	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_01145	COG1120	ATPase activity
BEN31_01150	COG0745	RESPONSE REGULATOR receiver
BEN31_01155	COG2205	protein histidine kinase activity
BEN31_01160	COG1904	glucuronate isomerase
BEN31_01165	COG1609	Transcriptional regulator
BEN31_01170	COG0246	Mannitol dehydrogenase
BEN31_01175	COG2721	sulfolactate sulfo-lyase activity
BEN31_01185	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_01190	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_01195	COG1120	ATPase activity
BEN31_01200	COG2096	Adenosyltransferase
BEN31_01205	COG4758	membrane
BEN31_01210	COG1842	Phage shock protein A
BEN31_01220	COG4758	membrane
BEN31_01225	COG4585	Histidine kinase
BEN31_01230	COG2197	response regulator
BEN31_01245	COG0814	amino acid
BEN31_01250	COG0697	spore germination
BEN31_01255	COG0114	fumarate hydratase activity
BEN31_01260	COG1309	transcriptional regulator
BEN31_01265	COG2770	Histidine kinase
BEN31_01265	COG2205	protein histidine kinase activity
BEN31_01270	COG0745	RESPONSE REGULATOR receiver
BEN31_01275	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN31_01280	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_01290	COG1120	ATPase activity
BEN31_01300	COG5577	PFAM Coat F domain
BEN31_01310	COG1250	3-hydroxyacyl-CoA dehydrogenase
BEN31_01310	COG1024	Enoyl-CoA hydratase
BEN31_01315	COG0183	Belongs to the thiolase family
BEN31_01320	COG1960	acyl-CoA dehydrogenase activity
BEN31_01325	COG1393	Belongs to the ArsC family
BEN31_01330	COG0509	glycine decarboxylation via glycine cleavage system
BEN31_01340	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BEN31_01345	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_01355	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BEN31_01360	COG2011	ABC-type metal ion transport system permease component
BEN31_01365	COG1464	Belongs to the NlpA lipoprotein family
BEN31_01370	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BEN31_01375	COG0396	ATPase activity
BEN31_01380	COG0719	Fe-S assembly protein
BEN31_01385	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BEN31_01390	COG0822	iron-sulfur transferase activity
BEN31_01395	COG0719	Fe-S assembly protein
BEN31_01400	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BEN31_01410	COG2311	Membrane
BEN31_01415	COG0745	RESPONSE REGULATOR receiver
BEN31_01420	COG5002	protein histidine kinase activity
BEN31_01420	COG0642	Histidine kinase
BEN31_01430	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_01435	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_01440	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_01450	COG2356	endonuclease I
BEN31_01455	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BEN31_01460	COG2814	Major facilitator Superfamily
BEN31_01465	COG2140	Oxalate decarboxylase
BEN31_01470	COG2508	Transcriptional regulator
BEN31_01475	COG1801	Protein of unknown function DUF72
BEN31_01480	COG0737	Belongs to the 5'-nucleotidase family
BEN31_01485	COG3377	Domain of unknown function (DUF1805)
BEN31_01495	COG0739	heme binding
BEN31_01500	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BEN31_01510	COG4470	Protein conserved in bacteria
BEN31_01515	COG2445	Protein of unknown function DUF86
BEN31_01520	COG0647	UMP catabolic process
BEN31_01525	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BEN31_01530	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BEN31_01535	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BEN31_01540	COG0460	homoserine dehydrogenase
BEN31_01545	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BEN31_01550	COG0083	homoserine kinase activity
BEN31_01555	COG4946	Tricorn protease homolog
BEN31_01555	COG1506	peptidase
BEN31_01555	COG0823	Involved in the tonB-independent uptake of proteins
BEN31_01560	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BEN31_01565	COG4837	Protein of unknown function (DUF1462)
BEN31_01575	COG1252	NADH dehydrogenase
BEN31_01580	COG4844	belongs to the
BEN31_01585	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BEN31_01590	COG0316	Belongs to the HesB IscA family
BEN31_01595	COG5504	Zn-dependent protease
BEN31_01600	COG0789	Transcriptional regulator
BEN31_01610	COG0492	ferredoxin-NADP+ reductase activity
BEN31_01615	COG1252	NADH dehydrogenase
BEN31_01625	COG3584	3D domain protein
BEN31_01630	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
BEN31_01635	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BEN31_01640	COG2056	Na+-H+ antiporter family
BEN31_01645	COG4326	sporulation control protein
BEN31_01650	COG1268	BioY protein
BEN31_01655	COG0686	Belongs to the AlaDH PNT family
BEN31_01660	COG2508	Transcriptional regulator
BEN31_01660	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
BEN31_01665	COG4842	Belongs to the WXG100 family
BEN31_01670	COG5417	Belongs to the EsaB family
BEN31_01675	COG4499	WXG100 protein secretion system (Wss), protein YukC
BEN31_01680	COG1674	ftsk spoiiie
BEN31_01680	COG0433	COG0433 Predicted ATPase
BEN31_01685	COG1511	domain protein
BEN31_01695	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_01700	COG1418	mRNA catabolic process
BEN31_01715	COG0628	permease
BEN31_01735	COG5506	Protein of unknown function (DUF1694)
BEN31_01740	COG1335	isochorismatase
BEN31_01745	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
BEN31_01750	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BEN31_01765	COG0142	geranyltranstransferase activity
BEN31_01770	COG4585	Histidine kinase
BEN31_01775	COG2197	response regulator
BEN31_01780	COG2050	protein possibly involved in aromatic compounds catabolism
BEN31_01785	COG1320	monovalent cation:proton antiporter activity
BEN31_01790	COG2212	antiporter activity
BEN31_01795	COG1863	multisubunit Na H antiporter MnhE subunit
BEN31_01800	COG0651	ATP synthesis coupled electron transport
BEN31_01805	COG1006	Multisubunit Na H antiporter MnhC subunit
BEN31_01810	COG2111	Na H antiporter
BEN31_01815	COG2111	Na H antiporter
BEN31_01815	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BEN31_01825	COG3493	citrate carrier protein
BEN31_01850	COG4565	transcriptional regulatory protein
BEN31_01855	COG3290	protein histidine kinase activity
BEN31_01865	COG3011	Protein conserved in bacteria
BEN31_01870	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BEN31_01875	COG2814	Major facilitator Superfamily
BEN31_01880	COG5018	Exonuclease
BEN31_01895	COG2205	protein histidine kinase activity
BEN31_01900	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BEN31_01910	COG2267	carboxylic ester hydrolase activity
BEN31_01915	COG1522	sequence-specific DNA binding
BEN31_01920	COG0436	Aminotransferase
BEN31_01925	COG1098	S1 RNA binding domain
BEN31_01930	COG2155	Conserved Protein
BEN31_01935	COG1979	alcohol dehydrogenase
BEN31_01940	COG1979	alcohol dehydrogenase
BEN31_01945	COG0166	Belongs to the GPI family
BEN31_01960	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BEN31_01970	COG2738	Putative neutral zinc metallopeptidase
BEN31_01975	COG1253	flavin adenine dinucleotide binding
BEN31_01980	COG0432	Pfam Uncharacterised protein family UPF0047
BEN31_01985	COG2070	2-Nitropropane dioxygenase
BEN31_02000	COG0840	transmembrane signaling receptor activity
BEN31_02005	COG0840	transmembrane signaling receptor activity
BEN31_02010	COG0840	transmembrane signaling receptor activity
BEN31_02015	COG0840	transmembrane signaling receptor activity
BEN31_02020	COG0693	protein deglycase activity
BEN31_02025	COG0673	inositol 2-dehydrogenase activity
BEN31_02040	COG0628	permease
BEN31_02055	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BEN31_02065	COG1396	sequence-specific DNA binding
BEN31_02080	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
BEN31_02090	COG1595	DNA-templated transcription, initiation
BEN31_02095	COG5484	DNA packaging
BEN31_02100	COG1783	phage Terminase large subunit
BEN31_02105	COG5518	Phage portal protein
BEN31_02110	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BEN31_02115	COG4653	Phage capsid family
BEN31_02160	COG5280	Phage tail tape measure protein TP901
BEN31_02160	COG5280	Phage tail tape measure protein TP901
BEN31_02160	COG3953	SLT domain
BEN31_02160	COG3953	SLT domain
BEN31_02165	COG1652	LysM domain
BEN31_02170	COG4193	domain, Protein
BEN31_02180	COG3628	GPW Gp25 family protein
BEN31_02185	COG3299	homolog of phage Mu protein gp47
BEN31_02190	COG3778	Protein conserved in bacteria
BEN31_02225	COG3409	Peptidoglycan-binding domain 1 protein
BEN31_02225	COG5632	N-Acetylmuramoyl-L-alanine amidase
BEN31_02240	COG1510	regulation of RNA biosynthetic process
BEN31_02250	COG1454	alcohol dehydrogenase
BEN31_02255	COG2318	DinB family
BEN31_02260	COG1585	Membrane protein implicated in regulation of membrane protease activity
BEN31_02265	COG2268	Band 7 protein
BEN31_02270	COG0772	Belongs to the SEDS family
BEN31_02275	COG0772	Belongs to the SEDS family
BEN31_02280	COG3339	Conserved Protein
BEN31_02285	COG1247	-acetyltransferase
BEN31_02290	COG3859	Proton-coupled thiamine transporter YuaJ
BEN31_02420	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BEN31_02425	COG1575	Belongs to the MenA family. Type 1 subfamily
BEN31_02430	COG1169	isochorismate synthase
BEN31_02435	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
BEN31_02440	COG0596	Alpha beta hydrolase
BEN31_02445	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BEN31_02450	COG0318	PFAM AMP-dependent synthetase and ligase
BEN31_02455	COG4948	Mandelate Racemase Muconate Lactonizing
BEN31_02470	COG1294	oxidase, subunit
BEN31_02475	COG1271	oxidase subunit
BEN31_02485	COG0254	rRNA binding
BEN31_02490	COG3443	Belongs to the bacterial solute-binding protein 9 family
BEN31_02490	COG0803	Belongs to the bacterial solute-binding protein 9 family
BEN31_02495	COG0288	reversible hydration of carbon dioxide
BEN31_02500	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BEN31_02505	COG1854	S-ribosylhomocysteine lyase activity
BEN31_02520	COG0783	Belongs to the Dps family
BEN31_02530	COG4824	toxin secretion phage lysis holin
BEN31_02545	COG2310	stress, protein
BEN31_02550	COG0494	nUDIX hydrolase
BEN31_02555	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BEN31_02560	COG1116	anion transmembrane transporter activity
BEN31_02565	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BEN31_02580	COG1506	peptidase
BEN31_02590	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
BEN31_02595	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BEN31_02600	COG0367	asparagine synthase
BEN31_02605	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BEN31_02610	COG2267	carboxylic ester hydrolase activity
BEN31_02620	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
BEN31_02625	COG1242	4 iron, 4 sulfur cluster binding
BEN31_02640	COG1725	Transcriptional regulator
BEN31_02645	COG1131	(ABC) transporter
BEN31_02655	COG1136	(ABC) transporter
BEN31_02660	COG0577	efflux transmembrane transporter activity
BEN31_02665	COG2433	Pfam Transposase IS66
BEN31_02670	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_02670	COG2202	Pas domain
BEN31_02680	COG0495	leucyl-tRNA aminoacylation
BEN31_02685	COG1073	alpha beta
BEN31_02690	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BEN31_02695	COG0395	ABC-type sugar transport system, permease component
BEN31_02700	COG1653	transport
BEN31_02705	COG0656	L-ascorbic acid biosynthetic process
BEN31_02710	COG2814	Major facilitator Superfamily
BEN31_02715	COG1733	regulation of RNA biosynthetic process
BEN31_02720	COG2207	Transcriptional regulator
BEN31_02725	COG4209	transmembrane transport
BEN31_02730	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
BEN31_02735	COG1653	transport
BEN31_02740	COG0673	inositol 2-dehydrogenase activity
BEN31_02745	COG5578	integral membrane protein
BEN31_02750	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BEN31_02765	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BEN31_02775	COG2081	HI0933 family
BEN31_02780	COG2244	polysaccharide biosynthetic process
BEN31_02785	COG1187	pseudouridine synthase activity
BEN31_02790	COG1349	DNA-binding transcription factor activity
BEN31_02795	COG2252	PERMEase
BEN31_02800	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BEN31_02805	COG3340	Belongs to the peptidase S51 family
BEN31_02810	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BEN31_02815	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
BEN31_02825	COG1597	lipid kinase activity
BEN31_02830	COG0510	thiamine kinase activity
BEN31_02840	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BEN31_02845	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BEN31_02850	COG0281	malic enzyme
BEN31_02855	COG5584	Small secreted protein
BEN31_02860	COG1363	Peptidase, m42
BEN31_02875	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_02880	COG4848	Belongs to the UPF0354 family
BEN31_02885	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN31_02890	COG1674	ftsk spoiiie
BEN31_02895	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BEN31_02900	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
BEN31_02905	COG4980	gas vesicle protein
BEN31_02910	COG3118	belongs to the thioredoxin family
BEN31_02915	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
BEN31_02915	COG1605	Chorismate mutase
BEN31_02920	COG1609	Transcriptional regulator
BEN31_02925	COG0123	including yeast histone deacetylase and acetoin utilization protein
BEN31_02930	COG0517	IMP dehydrogenase activity
BEN31_02935	COG0454	-acetyltransferase
BEN31_02940	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BEN31_02945	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BEN31_02950	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BEN31_02960	COG1335	isochorismatase
BEN31_02975	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BEN31_02980	COG1956	GAF domain-containing protein
BEN31_02985	COG1309	transcriptional regulator
BEN31_02990	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BEN31_02995	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
BEN31_03000	COG1114	Component of the transport system for branched-chain amino acids
BEN31_03005	COG1114	Component of the transport system for branched-chain amino acids
BEN31_03010	COG1104	cysteine desulfurase activity
BEN31_03015	COG0301	tRNA thio-modification
BEN31_03025	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BEN31_03030	COG1279	arginine transmembrane transporter activity
BEN31_03040	COG2249	NAD(P)H dehydrogenase (quinone) activity
BEN31_03045	COG0402	S-adenosylhomocysteine deaminase activity
BEN31_03050	COG0577	efflux transmembrane transporter activity
BEN31_03055	COG1136	(ABC) transporter
BEN31_03060	COG1695	Transcriptional regulator
BEN31_03065	COG0772	Belongs to the SEDS family
BEN31_03070	COG2205	protein histidine kinase activity
BEN31_03075	COG0745	RESPONSE REGULATOR receiver
BEN31_03080	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_03085	COG2197	response regulator
BEN31_03090	COG4585	Histidine kinase
BEN31_03095	COG3239	Fatty acid desaturase
BEN31_03105	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BEN31_03110	COG0616	signal peptide processing
BEN31_03115	COG1714	RDD family
BEN31_03125	COG3874	Sporulation protein YtfJ
BEN31_03130	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
BEN31_03135	COG0827	DNA restriction-modification system
BEN31_03140	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BEN31_03145	COG0521	Mo-molybdopterin cofactor biosynthetic process
BEN31_03150	COG0137	argininosuccinate synthase activity
BEN31_03155	COG0165	Argininosuccinate lyase
BEN31_03160	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_03165	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
BEN31_03170	COG4109	DRTGG domain
BEN31_03180	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
BEN31_03200	COG0587	DNA-directed DNA polymerase activity
BEN31_03205	COG0281	malic enzyme
BEN31_03210	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BEN31_03215	COG0825	malonyl-CoA metabolic process
BEN31_03220	COG0205	6-phosphofructokinase activity
BEN31_03230	COG3030	protein affecting phage T7 exclusion by the F plasmid
BEN31_03235	COG0628	permease
BEN31_03240	COG2707	UPF0756 membrane protein
BEN31_03245	COG0372	Belongs to the citrate synthase family
BEN31_03250	COG0538	isocitrate dehydrogenase activity
BEN31_03255	COG0039	L-malate dehydrogenase activity
BEN31_03260	COG0745	RESPONSE REGULATOR receiver
BEN31_03265	COG5002	protein histidine kinase activity
BEN31_03270	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BEN31_03270	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BEN31_03275	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BEN31_03280	COG1971	Probably functions as a manganese efflux pump
BEN31_03285	COG0237	dephospho-CoA kinase activity
BEN31_03290	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BEN31_03295	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
BEN31_03305	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BEN31_03310	COG3611	Membrane attachment protein
BEN31_03315	COG1484	DNA-dependent DNA replication
BEN31_03320	COG0398	Pfam SNARE associated Golgi protein
BEN31_03330	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BEN31_03345	COG3275	phosphorelay sensor kinase activity
BEN31_03350	COG3279	Response regulator of the LytR AlgR family
BEN31_03360	COG1346	cytolysis
BEN31_03365	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
BEN31_03370	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BEN31_03375	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BEN31_03380	COG3326	Membrane
BEN31_03390	COG1363	Peptidase, m42
BEN31_03395	COG1966	Carbon starvation protein
BEN31_03405	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BEN31_03410	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BEN31_03415	COG0072	phenylalanine-tRNA ligase activity
BEN31_03415	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN31_03420	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BEN31_03425	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
BEN31_03430	COG1286	toxin biosynthetic process
BEN31_03435	COG1796	DNA polymerase
BEN31_03435	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BEN31_03440	COG1193	negative regulation of DNA recombination
BEN31_03445	COG3766	membrane
BEN31_03455	COG0318	PFAM AMP-dependent synthetase and ligase
BEN31_03460	COG1309	transcriptional regulator
BEN31_03465	COG1024	Enoyl-CoA hydratase
BEN31_03470	COG2086	electron transfer activity
BEN31_03475	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
BEN31_03480	COG3534	alpha-L-arabinofuranosidase
BEN31_03485	COG3118	belongs to the thioredoxin family
BEN31_03490	COG0322	excinuclease ABC activity
BEN31_03495	COG0527	aspartate kinase activity
BEN31_03500	COG1719	4-vinyl reductase, 4VR
BEN31_03505	COG2009	succinate dehydrogenase
BEN31_03510	COG1053	succinate dehydrogenase
BEN31_03515	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BEN31_03520	COG0824	Thioesterase
BEN31_03530	COG2828	Protein conserved in bacteria
BEN31_03535	COG0583	DNA-binding transcription factor activity
BEN31_03540	COG2851	Citrate transporter
BEN31_03545	COG2197	response regulator
BEN31_03550	COG1846	Transcriptional regulator
BEN31_03555	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BEN31_03560	COG5401	PFAM Sporulation and spore germination
BEN31_03565	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BEN31_03570	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BEN31_03575	COG0622	Phosphoesterase
BEN31_03600	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BEN31_03605	COG1696	Membrane protein involved in D-alanine export
BEN31_03610	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BEN31_03615	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
BEN31_03620	COG3339	Conserved Protein
BEN31_03625	COG2706	6-phosphogluconolactonase activity
BEN31_03630	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BEN31_03635	COG0028	Belongs to the TPP enzyme family
BEN31_03640	COG0440	acetolactate synthase activity
BEN31_03645	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BEN31_03650	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BEN31_03655	COG0473	3-isopropylmalate dehydrogenase activity
BEN31_03660	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BEN31_03665	COG0066	3-isopropylmalate dehydratase activity
BEN31_03670	COG0457	Tetratricopeptide repeat
BEN31_03670	COG1477	protein flavinylation
BEN31_03675	COG0544	peptidyl-prolyl cis-trans isomerase activity
BEN31_03680	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BEN31_03685	COG1067	ATP-dependent peptidase activity
BEN31_03685	COG0470	DNA polymerase III
BEN31_03690	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BEN31_03695	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BEN31_03705	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
BEN31_03710	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BEN31_03715	COG0181	hydroxymethylbilane synthase activity
BEN31_03720	COG1587	Uroporphyrinogen-III synthase
BEN31_03725	COG0113	porphobilinogen synthase activity
BEN31_03730	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BEN31_03735	COG1388	LysM domain
BEN31_03740	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BEN31_03750	COG0525	valine-tRNA ligase activity
BEN31_03755	COG0285	dihydrofolate synthase activity
BEN31_03770	COG0424	maF-like protein
BEN31_03775	COG2003	Belongs to the UPF0758 family
BEN31_03780	COG1077	Cell shape determining protein MreB Mrl
BEN31_03785	COG1792	Involved in formation and maintenance of cell shape
BEN31_03790	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BEN31_03795	COG0850	regulation of cytokinetic process
BEN31_03800	COG2894	cell division
BEN31_03805	COG0739	heme binding
BEN31_03810	COG1994	Peptidase M50
BEN31_03815	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BEN31_03820	COG2868	ribosomal protein
BEN31_03825	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BEN31_03830	COG3290	protein histidine kinase activity
BEN31_03835	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
BEN31_03840	COG4492	Belongs to the UPF0735 family
BEN31_03845	COG0077	Prephenate dehydratase
BEN31_03850	COG1827	regulation of RNA biosynthetic process
BEN31_03855	COG1104	cysteine desulfurase activity
BEN31_03860	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BEN31_03865	COG0157	Belongs to the NadC ModD family
BEN31_03870	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
BEN31_03875	COG1388	LysM domain
BEN31_03875	COG1388	LysM domain
BEN31_03885	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BEN31_03895	COG2112	serine threonine protein kinase
BEN31_03905	COG0632	four-way junction helicase activity
BEN31_03910	COG2255	four-way junction helicase activity
BEN31_03920	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BEN31_03925	COG0343	queuine tRNA-ribosyltransferase activity
BEN31_03930	COG1862	Preprotein translocase
BEN31_03940	COG2323	membrane
BEN31_03945	COG2244	polysaccharide biosynthetic process
BEN31_03955	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BEN31_03955	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BEN31_03960	COG0490	domain, Protein
BEN31_03965	COG5416	Lipopolysaccharide assembly protein A domain
BEN31_03970	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BEN31_03970	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
BEN31_03975	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BEN31_03980	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BEN31_03985	COG1490	D-aminoacyl-tRNA deacylase activity
BEN31_03990	COG3103	Sh3 type 3 domain protein
BEN31_03990	COG0860	N-Acetylmuramoyl-L-alanine amidase
BEN31_03990	COG4991	sh3 domain protein
BEN31_03995	COG0124	histidyl-tRNA synthetase
BEN31_04010	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BEN31_04015	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BEN31_04020	COG1959	2 iron, 2 sulfur cluster binding
BEN31_04025	COG1104	cysteine desulfurase activity
BEN31_04030	COG0482	sulfurtransferase activity
BEN31_04035	COG0457	Tetratricopeptide repeat
BEN31_04040	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BEN31_04045	COG3881	PFAM PRC-barrel domain
BEN31_04060	COG0765	amino acid transport
BEN31_04065	COG0765	amino acid transport
BEN31_04070	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_04075	COG1126	abc transporter atp-binding protein
BEN31_04080	COG0628	permease
BEN31_04085	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BEN31_04090	COG4472	Bacterial protein of unknown function (DUF965)
BEN31_04095	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BEN31_04100	COG3906	Belongs to the UPF0473 family
BEN31_04105	COG1268	BioY protein
BEN31_04110	COG0318	PFAM AMP-dependent synthetase and ligase
BEN31_04115	COG0183	Belongs to the thiolase family
BEN31_04120	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BEN31_04140	COG0572	uridine kinase
BEN31_04145	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BEN31_04150	COG0768	penicillin binding
BEN31_04165	COG2226	methyltransferase
BEN31_04170	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BEN31_04175	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BEN31_04180	COG0626	cystathionine gamma-synthase activity
BEN31_04195	COG2226	methyltransferase
BEN31_04200	COG1063	alcohol dehydrogenase
BEN31_04205	COG2226	methyltransferase
BEN31_04210	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_04220	COG1063	alcohol dehydrogenase
BEN31_04225	COG3546	catalase activity
BEN31_04235	COG0765	amino acid transport
BEN31_04240	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_04245	COG1126	abc transporter atp-binding protein
BEN31_04250	COG1960	acyl-CoA dehydrogenase activity
BEN31_04255	COG2602	Beta-lactamase
BEN31_04285	COG1733	regulation of RNA biosynthetic process
BEN31_04290	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
BEN31_04295	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BEN31_04305	COG1609	Transcriptional regulator
BEN31_04320	COG2160	L-arabinose isomerase activity
BEN31_04340	COG1131	(ABC) transporter
BEN31_04375	COG0726	polysaccharide deacetylase
BEN31_04390	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BEN31_04400	COG1309	transcriptional regulator
BEN31_04405	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN31_04405	COG0596	Alpha beta hydrolase
BEN31_04410	COG1902	pentaerythritol trinitrate reductase activity
BEN31_04415	COG0300	oxidoreductase activity
BEN31_04420	COG4221	oxidoreductase activity
BEN31_04435	COG0457	Tetratricopeptide repeat
BEN31_04440	COG0726	polysaccharide deacetylase
BEN31_04445	COG2755	lipolytic protein G-D-S-L family
BEN31_04455	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
BEN31_04460	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BEN31_04465	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BEN31_04470	COG1534	Rna-binding protein
BEN31_04475	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
BEN31_04480	COG1713	HD superfamily hydrolase involved in NAD metabolism
BEN31_04485	COG0799	negative regulation of ribosome biogenesis
BEN31_04490	COG2226	methyltransferase
BEN31_04495	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BEN31_04500	COG1555	photosystem II stabilization
BEN31_04505	COG2131	deaminase
BEN31_04510	COG2333	competence protein COMEC
BEN31_04510	COG0658	competence protein
BEN31_04520	COG1466	dna polymerase III delta subunit
BEN31_04525	COG0268	Binds directly to 16S ribosomal RNA
BEN31_04530	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
BEN31_04535	COG0860	N-Acetylmuramoyl-L-alanine amidase
BEN31_04545	COG0481	GTPase activity
BEN31_04550	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BEN31_04555	COG1420	regulation of RNA biosynthetic process
BEN31_04560	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BEN31_04565	COG0443	Heat shock 70 kDa protein
BEN31_04570	COG0484	heat shock protein binding
BEN31_04575	COG2264	protein methyltransferase activity
BEN31_04580	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BEN31_04585	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BEN31_04590	COG1283	sodium-dependent phosphate transmembrane transporter activity
BEN31_04595	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BEN31_04600	COG1610	YqeY-like protein
BEN31_04605	COG1030	water channel activity
BEN31_04610	COG4864	UPF0365 protein
BEN31_04625	COG0561	phosphatase activity
BEN31_04630	COG1702	phosphate starvation-inducible protein PhoH
BEN31_04635	COG1480	7TM receptor with intracellular HD hydrolase
BEN31_04640	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BEN31_04645	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BEN31_04650	COG0295	cytidine deaminase activity
BEN31_04655	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BEN31_04665	COG1381	Involved in DNA repair and RecF pathway recombination
BEN31_04670	COG0752	glycyl-tRNA synthetase alpha subunit
BEN31_04675	COG0751	glycine-tRNA ligase activity
BEN31_04680	COG0517	IMP dehydrogenase activity
BEN31_04685	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BEN31_04690	COG1671	Belongs to the UPF0178 family
BEN31_04695	COG0358	DNA primase activity
BEN31_04700	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BEN31_04705	COG2010	Cytochrome c
BEN31_04710	COG2384	SAM-dependent methyltransferase
BEN31_04715	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BEN31_04720	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BEN31_04730	COG0513	Belongs to the DEAD box helicase family
BEN31_04735	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
BEN31_04745	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BEN31_04750	COG1121	(ABC) transporter
BEN31_04755	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BEN31_04760	COG0735	belongs to the Fur family
BEN31_04765	COG1940	carbohydrate kinase activity
BEN31_04770	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
BEN31_04775	COG4709	membrane
BEN31_04780	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BEN31_04785	COG1388	LysM domain
BEN31_04790	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN31_04795	COG5521	maltodextrose utilization protein MalA
BEN31_04800	COG2839	Protein conserved in bacteria
BEN31_04805	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BEN31_04810	COG0477	Major facilitator Superfamily
BEN31_04820	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BEN31_04825	COG0573	inorganic phosphate transmembrane transporter activity
BEN31_04830	COG0581	inorganic phosphate transmembrane transporter activity
BEN31_04835	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BEN31_04840	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BEN31_04845	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BEN31_04855	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BEN31_04860	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BEN31_04865	COG0457	Tetratricopeptide repeat
BEN31_04865	COG0705	Rhomboid family
BEN31_04870	COG4483	Protein conserved in bacteria
BEN31_04875	COG1940	carbohydrate kinase activity
BEN31_04880	COG1368	sulfuric ester hydrolase activity
BEN31_04885	COG2866	Carboxypeptidase
BEN31_04890	COG2814	Major facilitator Superfamily
BEN31_04895	COG0011	TIGRFAM Protein of
BEN31_04905	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BEN31_04915	COG1393	Belongs to the ArsC family
BEN31_04925	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_04935	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BEN31_04940	COG1459	type II secretion system
BEN31_04945	COG4537	Required for transformation and DNA binding
BEN31_04950	COG4970	Tfp pilus assembly protein FimT
BEN31_04985	COG0681	Belongs to the peptidase S26 family
BEN31_05005	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BEN31_05010	COG0404	The glycine cleavage system catalyzes the degradation of glycine
BEN31_05015	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BEN31_05020	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BEN31_05025	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BEN31_05030	COG0095	Lipoate-protein ligase
BEN31_05035	COG1321	iron dependent repressor
BEN31_05040	COG1752	Esterase of the alpha-beta hydrolase superfamily
BEN31_05050	COG3872	metal-dependent enzyme
BEN31_05060	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BEN31_05065	COG0006	proline dipeptidase activity
BEN31_05070	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BEN31_05080	COG3854	ATPases associated with a variety of cellular activities
BEN31_05120	COG0511	ligase activity, forming carbon-carbon bonds
BEN31_05125	COG0439	Biotin carboxylase
BEN31_05130	COG1302	Protein conserved in bacteria
BEN31_05135	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BEN31_05140	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BEN31_05145	COG1570	exodeoxyribonuclease VII activity
BEN31_05150	COG1722	exodeoxyribonuclease VII activity
BEN31_05155	COG0142	geranyltranstransferase activity
BEN31_05160	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
BEN31_05165	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
BEN31_05170	COG1438	arginine binding
BEN31_05175	COG0497	DNA recombination
BEN31_05180	COG0750	zinc metalloprotease
BEN31_05185	COG0745	RESPONSE REGULATOR receiver
BEN31_05195	COG0457	Tetratricopeptide repeat
BEN31_05200	COG0584	glycerophosphoryl diester phosphodiesterase
BEN31_05210	COG3829	transcription factor binding
BEN31_05210	COG3290	protein histidine kinase activity
BEN31_05215	COG0280	phosphate acetyltransferase
BEN31_05220	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BEN31_05225	COG3426	butyrate kinase activity
BEN31_05230	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN31_05235	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BEN31_05240	COG0022	dehydrogenase e1 component
BEN31_05245	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN31_05255	COG1597	lipid kinase activity
BEN31_05265	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_05270	COG0765	amino acid transport
BEN31_05275	COG1126	abc transporter atp-binding protein
BEN31_05280	COG4129	membrane
BEN31_05285	COG1376	ErfK ybiS ycfS ynhG family protein
BEN31_05290	COG0346	lactoylglutathione lyase activity
BEN31_05295	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BEN31_05300	COG2195	Cleaves the N-terminal amino acid of tripeptides
BEN31_05310	COG0706	membrane insertase activity
BEN31_05320	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BEN31_05325	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BEN31_05330	COG4975	Glucose uptake
BEN31_05335	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_05340	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BEN31_05345	COG1447	Phosphotransferase system cellobiose-specific component IIA
BEN31_05350	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BEN31_05355	COG2723	6-phospho-beta-galactosidase activity
BEN31_05360	COG2188	Transcriptional regulator
BEN31_05365	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BEN31_05370	COG1234	tRNA 3'-trailer cleavage
BEN31_05375	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN31_05380	COG0596	Alpha beta hydrolase
BEN31_05385	COG1902	pentaerythritol trinitrate reductase activity
BEN31_05390	COG4187	Peptidase family M20/M25/M40
BEN31_05400	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BEN31_05405	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BEN31_05410	COG0300	oxidoreductase activity
BEN31_05415	COG0446	pyridine nucleotide-disulphide oxidoreductase
BEN31_05420	COG1072	(Pantothenic acid kinase))
BEN31_05425	COG2211	Major facilitator Superfamily
BEN31_05435	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BEN31_05445	COG0456	acetyltransferase
BEN31_05450	COG0456	acetyltransferase
BEN31_05450	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BEN31_05455	COG4305	rare lipoprotein A
BEN31_05460	COG4918	Iron-sulphur cluster biosynthesis
BEN31_05470	COG0457	Tetratricopeptide repeat
BEN31_05475	COG1073	alpha beta
BEN31_05490	COG0667	Aldo Keto reductase
BEN31_05495	COG0494	nUDIX hydrolase
BEN31_05500	COG1379	DNA repair
BEN31_05515	COG1404	Belongs to the peptidase S8 family
BEN31_05520	COG1300	Membrane
BEN31_05525	COG0735	belongs to the Fur family
BEN31_05535	COG4974	Belongs to the 'phage' integrase family
BEN31_05540	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
BEN31_05545	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BEN31_05550	COG1686	Belongs to the peptidase S11 family
BEN31_05560	COG2172	sigma factor antagonist activity
BEN31_05565	COG1191	sigma factor activity
BEN31_05585	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BEN31_05600	COG0697	spore germination
BEN31_05605	COG0019	diaminopimelate decarboxylase activity
BEN31_05610	COG4086	secreted protein
BEN31_05615	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BEN31_05620	COG2814	Major facilitator Superfamily
BEN31_05640	COG0307	riboflavin synthase, alpha
BEN31_05650	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BEN31_05655	COG0456	acetyltransferase
BEN31_05660	COG1547	Domain of unknown function (DUF309)
BEN31_05665	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BEN31_05670	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BEN31_05680	COG1686	Belongs to the peptidase S11 family
BEN31_05685	COG2715	membrane protein required for spore maturation
BEN31_05690	COG0700	Nucleoside recognition
BEN31_05695	COG1187	pseudouridine synthase activity
BEN31_05700	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_05705	COG1333	cytochrome c biogenesis protein
BEN31_05710	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BEN31_05715	COG0745	RESPONSE REGULATOR receiver
BEN31_05720	COG5002	protein histidine kinase activity
BEN31_05725	COG1595	DNA-templated transcription, initiation
BEN31_05735	COG3409	Peptidoglycan-binding domain 1 protein
BEN31_05735	COG5632	N-Acetylmuramoyl-L-alanine amidase
BEN31_05740	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BEN31_05745	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
BEN31_05750	COG1141	Ferredoxin
BEN31_05755	COG4955	Helix-turn-helix domain
BEN31_05760	COG0514	ATP-dependent DNA helicase (RecQ)
BEN31_05765	COG1266	CAAX protease self-immunity
BEN31_05770	COG1388	LysM domain
BEN31_05780	COG1408	metallophosphoesterase
BEN31_05785	COG4862	establishment of competence for transformation
BEN31_05790	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BEN31_05795	COG0492	ferredoxin-NADP+ reductase activity
BEN31_05800	COG2339	peptidase activity
BEN31_05805	COG3409	Peptidoglycan-binding domain 1 protein
BEN31_05805	COG3773	Cell wall hydrolase
BEN31_05810	COG2959	enzyme of heme biosynthesis
BEN31_05815	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
BEN31_05825	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
BEN31_05830	COG0539	negative regulation of cytoplasmic translation
BEN31_05835	COG1304	FMN binding
BEN31_05860	COG1160	GTP binding
BEN31_05865	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BEN31_05880	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BEN31_05885	COG0776	regulation of translation
BEN31_05890	COG0302	gtp cyclohydrolase
BEN31_05900	COG0142	geranyltranstransferase activity
BEN31_05905	COG2226	methyltransferase
BEN31_05910	COG0142	geranyltranstransferase activity
BEN31_05915	COG0105	UTP biosynthetic process
BEN31_05920	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BEN31_05925	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
BEN31_05930	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BEN31_05935	COG4401	Chorismate mutase type I
BEN31_05945	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BEN31_05950	COG0134	indole-3-glycerol-phosphate synthase activity
BEN31_05955	COG0135	phosphoribosylanthranilate isomerase activity
BEN31_05960	COG0133	tryptophan synthase activity
BEN31_05965	COG0159	tryptophan synthase activity
BEN31_05970	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BEN31_05975	COG0287	Prephenate dehydrogenase
BEN31_05980	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BEN31_05985	COG0457	Tetratricopeptide repeat
BEN31_05990	COG5582	Belongs to the UPF0302 family
BEN31_06000	COG0723	plastoquinol--plastocyanin reductase activity
BEN31_06005	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BEN31_06010	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BEN31_06010	COG2010	Cytochrome c
BEN31_06015	COG4347	Protein of unknown function (DUF1405)
BEN31_06025	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BEN31_06030	COG1694	Mazg nucleotide pyrophosphohydrolase
BEN31_06035	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
BEN31_06040	COG1803	Methylglyoxal synthase
BEN31_06045	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BEN31_06050	COG0438	transferase activity, transferring glycosyl groups
BEN31_06055	COG0617	tRNA 3'-terminal CCA addition
BEN31_06065	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BEN31_06070	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BEN31_06075	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
BEN31_06080	COG1199	ATP-dependent helicase activity
BEN31_06080	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BEN31_06090	COG5353	protein conserved in bacteria
BEN31_06095	COG0017	Asparaginyl-tRNA synthetase
BEN31_06100	COG3935	DnaD domain protein
BEN31_06105	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BEN31_06115	COG4499	WXG100 protein secretion system (Wss), protein YukC
BEN31_06115	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BEN31_06120	COG3331	DNA recombination
BEN31_06150	COG0071	Belongs to the small heat shock protein (HSP20) family
BEN31_06155	COG2190	(PTS) system
BEN31_06160	COG1902	pentaerythritol trinitrate reductase activity
BEN31_06165	COG1205	dead DEAH box helicase
BEN31_06165	COG1111	helicase
BEN31_06170	COG3359	exonuclease
BEN31_06175	COG4474	Belongs to the UPF0398 family
BEN31_06180	COG3599	regulation of cell shape
BEN31_06190	COG0116	Belongs to the methyltransferase superfamily
BEN31_06200	COG1199	ATP-dependent helicase activity
BEN31_06205	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BEN31_06210	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BEN31_06215	COG2233	PERMEase
BEN31_06220	COG3424	synthase
BEN31_06225	COG1755	Isoprenylcysteine carboxyl methyltransferase
BEN31_06230	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BEN31_06240	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BEN31_06250	COG0328	RNA-DNA hybrid ribonuclease activity
BEN31_06255	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BEN31_06260	COG0328	RNA-DNA hybrid ribonuclease activity
BEN31_06275	COG1278	Cold shock
BEN31_06285	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BEN31_06290	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
BEN31_06295	COG2759	Belongs to the formate--tetrahydrofolate ligase family
BEN31_06300	COG0386	Belongs to the glutathione peroxidase family
BEN31_06305	COG1418	mRNA catabolic process
BEN31_06310	COG1413	lyase activity
BEN31_06315	COG0129	dihydroxy-acid dehydratase activity
BEN31_06325	COG2521	methyltransferase
BEN31_06325	COG2136	Putative SAM-dependent methyltransferase
BEN31_06335	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BEN31_06340	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BEN31_06345	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BEN31_06350	COG0204	Acyl-transferase
BEN31_06355	COG1272	protein, Hemolysin III
BEN31_06360	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BEN31_06365	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BEN31_06380	COG1999	signal sequence binding
BEN31_06385	COG2755	lipolytic protein G-D-S-L family
BEN31_06390	COG4698	Protein conserved in bacteria
BEN31_06410	COG1846	Transcriptional regulator
BEN31_06415	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BEN31_06420	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BEN31_06425	COG1086	Polysaccharide biosynthesis protein
BEN31_06435	COG4641	Protein conserved in bacteria
BEN31_06450	COG0463	Glycosyl transferase, family 2
BEN31_06455	COG3829	transcription factor binding
BEN31_06460	COG1509	lysine 2,3-aminomutase activity
BEN31_06470	COG4479	Belongs to the UPF0346 family
BEN31_06485	COG0671	phosphoesterase, PA-phosphatase related
BEN31_06495	COG0813	purine-nucleoside phosphorylase activity
BEN31_06500	COG1876	peptidase activity
BEN31_06510	COG2226	methyltransferase
BEN31_06515	COG3409	Peptidoglycan-binding domain 1 protein
BEN31_06515	COG0793	Belongs to the peptidase S41A family
BEN31_06520	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BEN31_06530	COG0778	Nitroreductase
BEN31_06535	COG1733	regulation of RNA biosynthetic process
BEN31_06550	COG2962	Rard protein
BEN31_06560	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BEN31_06565	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
BEN31_06570	COG0534	Mate efflux family protein
BEN31_06575	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BEN31_06580	COG0791	NLP P60 protein
BEN31_06580	COG1388	LysM domain
BEN31_06585	COG2032	superoxide dismutase activity
BEN31_06590	COG0714	Associated with various cellular activities
BEN31_06595	COG4548	von Willebrand factor, type A
BEN31_06600	COG0567	Dehydrogenase, E1 component
BEN31_06605	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN31_06610	COG0385	Bile acid
BEN31_06615	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BEN31_06620	COG1657	PFAM Prenyltransferase squalene oxidase
BEN31_06625	COG1012	belongs to the aldehyde dehydrogenase family
BEN31_06645	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BEN31_06655	COG0514	ATP-dependent DNA helicase (RecQ)
BEN31_06660	COG3584	3D domain protein
BEN31_06660	COG1388	LysM domain
BEN31_06670	COG2322	membrane
BEN31_06675	COG0372	Belongs to the citrate synthase family
BEN31_06680	COG2079	MmgE PrpD family protein
BEN31_06685	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BEN31_06690	COG0741	lytic transglycosylase activity
BEN31_06695	COG0531	amino acid
BEN31_06700	COG0640	Transcriptional regulator
BEN31_06710	COG2378	regulation of single-species biofilm formation
BEN31_06715	COG3708	Transcriptional regulator
BEN31_06735	COG1994	Peptidase M50
BEN31_06740	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN31_06745	COG2211	Major facilitator Superfamily
BEN31_06755	COG1940	carbohydrate kinase activity
BEN31_06760	COG2115	Belongs to the xylose isomerase family
BEN31_06765	COG1070	Carbohydrate kinase
BEN31_06775	COG0243	molybdopterin cofactor binding
BEN31_06790	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BEN31_06795	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BEN31_06800	COG0454	-acetyltransferase
BEN31_06820	COG0583	DNA-binding transcription factor activity
BEN31_06825	COG0070	glutamate synthase
BEN31_06825	COG0069	glutamate synthase activity
BEN31_06825	COG0067	glutamate synthase
BEN31_06830	COG0493	'glutamate synthase
BEN31_06835	COG2223	nitrite transmembrane transporter activity
BEN31_06840	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BEN31_06845	COG0243	molybdopterin cofactor binding
BEN31_06850	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BEN31_06855	COG2146	nitrite reductase [NAD(P)H] activity
BEN31_06860	COG2323	membrane
BEN31_06865	COG4677	pectinesterase activity
BEN31_06870	COG2027	D-alanyl-D-alanine carboxypeptidase
BEN31_06875	COG0534	Mate efflux family protein
BEN31_06900	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BEN31_06910	COG1587	Uroporphyrinogen-III synthase
BEN31_06915	COG0586	Pfam SNARE associated Golgi protein
BEN31_06925	COG0166	Belongs to the GPI family
BEN31_06950	COG0247	lactate metabolic process
BEN31_06955	COG0277	FAD linked oxidase domain protein
BEN31_06960	COG3835	regulator
BEN31_06970	COG1349	DNA-binding transcription factor activity
BEN31_06980	COG1649	PFAM Uncharacterised BCR, COG1649
BEN31_06985	COG1960	acyl-CoA dehydrogenase activity
BEN31_06990	COG0318	PFAM AMP-dependent synthetase and ligase
BEN31_06995	COG0439	Biotin carboxylase
BEN31_07000	COG0511	ligase activity, forming carbon-carbon bonds
BEN31_07005	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BEN31_07010	COG1024	Enoyl-CoA hydratase
BEN31_07015	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BEN31_07020	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BEN31_07025	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BEN31_07030	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BEN31_07040	COG1012	belongs to the aldehyde dehydrogenase family
BEN31_07060	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN31_07070	COG1105	Belongs to the carbohydrate kinase PfkB family
BEN31_07075	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_07075	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_07075	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_07080	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_07080	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_07080	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_07090	COG2814	Major facilitator Superfamily
BEN31_07095	COG1846	Transcriptional regulator
BEN31_07100	COG5444	nuclease activity
BEN31_07115	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_07130	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BEN31_07155	COG1486	melibiose metabolic process
BEN31_07160	COG1012	belongs to the aldehyde dehydrogenase family
BEN31_07165	COG3507	Belongs to the glycosyl hydrolase 43 family
BEN31_07175	COG0745	RESPONSE REGULATOR receiver
BEN31_07180	COG2205	protein histidine kinase activity
BEN31_07195	COG0657	acetylesterase activity
BEN31_07210	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BEN31_07235	COG0251	oxidation-reduction process
BEN31_07240	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BEN31_07245	COG0640	Transcriptional regulator
BEN31_07250	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BEN31_07255	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BEN31_07275	COG0583	DNA-binding transcription factor activity
BEN31_07285	COG1733	regulation of RNA biosynthetic process
BEN31_07305	COG0473	3-isopropylmalate dehydrogenase activity
BEN31_07310	COG0738	Major facilitator superfamily
BEN31_07320	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BEN31_07325	COG0187	DNA topoisomerase II activity
BEN31_07335	COG1832	CoA-binding protein
BEN31_07340	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
BEN31_07345	COG4841	protein insertion into membrane
BEN31_07355	COG0824	Thioesterase
BEN31_07375	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_07380	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BEN31_07395	COG0071	Belongs to the small heat shock protein (HSP20) family
BEN31_07405	COG4846	Membrane protein involved in cytochrome C biogenesis
BEN31_07410	COG0785	Cytochrome C biogenesis protein
BEN31_07420	COG3763	UPF0154 protein
BEN31_07430	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BEN31_07435	COG4224	UPF0291 protein
BEN31_07440	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
BEN31_07445	COG1388	LysM domain
BEN31_07450	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BEN31_07465	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_07470	COG3209	COG3209 Rhs family protein
BEN31_07475	COG3591	Belongs to the peptidase S1B family
BEN31_07480	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BEN31_07480	COG2124	cytochrome p450
BEN31_07485	COG1309	transcriptional regulator
BEN31_07505	COG1556	Lactate utilization protein
BEN31_07510	COG1139	Iron-sulfur cluster binding protein
BEN31_07515	COG0247	lactate metabolic process
BEN31_07520	COG0702	epimerase
BEN31_07525	COG1959	2 iron, 2 sulfur cluster binding
BEN31_07535	COG4876	unkown
BEN31_07540	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
BEN31_07545	COG3285	dna ligase
BEN31_07545	COG1793	dna ligase
BEN31_07550	COG3619	membrane
BEN31_07560	COG0457	Tetratricopeptide repeat
BEN31_07570	COG5646	InterPro IPR014922
BEN31_07595	COG5444	nuclease activity
BEN31_07600	COG0457	Tetratricopeptide repeat
BEN31_07605	COG0174	glutamine synthetase
BEN31_07610	COG0789	Transcriptional regulator
BEN31_07615	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
BEN31_07620	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BEN31_07625	COG0464	growth
BEN31_07635	COG4112	unkown
BEN31_07640	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BEN31_07645	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BEN31_07650	COG1780	Probably involved in ribonucleotide reductase function
BEN31_07665	COG1923	regulation of RNA biosynthetic process
BEN31_07670	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
BEN31_07695	COG2076	Multidrug Resistance protein
BEN31_07700	COG1764	response to oxidative stress
BEN31_07705	COG4195	phage-related replication protein
BEN31_07710	COG1404	Belongs to the peptidase S8 family
BEN31_07715	COG0457	Tetratricopeptide repeat
BEN31_07720	COG4195	phage-related replication protein
BEN31_07725	COG1329	Transcriptional regulator
BEN31_07745	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BEN31_07750	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BEN31_07760	COG4550	Control of competence regulator ComK, YlbF/YmcA
BEN31_07765	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BEN31_07770	COG0156	8-amino-7-oxononanoate synthase activity
BEN31_07775	COG1063	alcohol dehydrogenase
BEN31_07780	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN31_07785	COG2359	stage V sporulation protein S
BEN31_07790	COG1692	metallophosphoesterase
BEN31_07795	COG1418	mRNA catabolic process
BEN31_07800	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BEN31_07805	COG1546	Belongs to the CinA family
BEN31_07805	COG1058	Belongs to the CinA family
BEN31_07810	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BEN31_07815	COG1426	Protein conserved in bacteria
BEN31_07830	COG0300	oxidoreductase activity
BEN31_07835	COG2409	Drug exporters of the RND superfamily
BEN31_07835	COG1033	growth of symbiont in host cell
BEN31_07845	COG0612	Peptidase, M16
BEN31_07850	COG0612	Peptidase, M16
BEN31_07855	COG1033	growth of symbiont in host cell
BEN31_07855	COG2409	Drug exporters of the RND superfamily
BEN31_07860	COG2814	Major facilitator Superfamily
BEN31_07865	COG2188	Transcriptional regulator
BEN31_07870	COG1674	ftsk spoiiie
BEN31_07870	COG4980	gas vesicle protein
BEN31_07880	COG0740	serine-type endopeptidase activity
BEN31_07885	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BEN31_07895	COG0527	aspartate kinase activity
BEN31_07900	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BEN31_07905	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BEN31_07910	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BEN31_07915	COG1873	PFAM PRC-barrel domain
BEN31_07925	COG0612	Peptidase, M16
BEN31_07930	COG0726	polysaccharide deacetylase
BEN31_07935	COG1185	polyribonucleotide nucleotidyltransferase activity
BEN31_07940	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BEN31_07945	COG0196	riboflavin kinase activity
BEN31_07950	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BEN31_07955	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BEN31_07960	COG1550	Protein conserved in bacteria
BEN31_07965	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
BEN31_07970	COG1358	cellular component organization or biogenesis
BEN31_07975	COG2740	Nucleic-acid-binding protein implicated in transcription termination
BEN31_07980	COG0195	Participates in both transcription termination and antitermination
BEN31_07985	COG0779	Required for maturation of 30S ribosomal subunits
BEN31_08010	COG2176	DNA-directed DNA polymerase activity
BEN31_08015	COG0442	prolyl-tRNA aminoacylation
BEN31_08020	COG0750	zinc metalloprotease
BEN31_08025	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
BEN31_08030	COG4589	Belongs to the CDS family
BEN31_08035	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BEN31_08040	COG0233	cytoplasmic translational termination
BEN31_08045	COG0528	UMP kinase activity
BEN31_08050	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BEN31_08055	COG0052	Belongs to the universal ribosomal protein uS2 family
BEN31_08065	COG1191	sigma factor activity
BEN31_08075	COG1776	CheC inhibitor of MCP methylation
BEN31_08080	COG0835	chemotaxis
BEN31_08085	COG0643	Histidine kinase
BEN31_08085	COG2198	Histidine kinase
BEN31_08090	COG2201	protein-glutamate methylesterase activity
BEN31_08095	COG0455	bacterial-type flagellum organization
BEN31_08100	COG1419	protein localization to endoplasmic reticulum
BEN31_08105	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BEN31_08110	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
BEN31_08115	COG1684	flagellar biosynthetic protein fliR
BEN31_08120	COG1987	bacterial-type flagellum assembly
BEN31_08125	COG1338	Plays a role in the flagellum-specific transport system
BEN31_08130	COG3190	flagellar
BEN31_08135	COG2201	protein-glutamate methylesterase activity
BEN31_08140	COG1776	CheC inhibitor of MCP methylation
BEN31_08140	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BEN31_08145	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BEN31_08150	COG1580	Controls the rotational direction of flagella during chemotaxis
BEN31_08155	COG1582	Flagellar protein (FlbD)
BEN31_08160	COG4786	Flagellar basal body rod
BEN31_08165	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
BEN31_08170	COG3144	bacterial-type flagellum assembly
BEN31_08175	COG3334	PFAM MgtE intracellular
BEN31_08180	COG2882	bacterial-type flagellum organization
BEN31_08185	COG1157	protein secretion by the type III secretion system
BEN31_08190	COG1317	bacterial-type flagellum organization
BEN31_08195	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BEN31_08200	COG1766	The M ring may be actively involved in energy transduction
BEN31_08205	COG1677	Flagellar hook-basal body complex protein FliE
BEN31_08210	COG1558	bacterial-type flagellum-dependent cell motility
BEN31_08215	COG1815	bacterial-type flagellum-dependent cell motility
BEN31_08220	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
BEN31_08225	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BEN31_08230	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BEN31_08235	COG4974	Belongs to the 'phage' integrase family
BEN31_08240	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
BEN31_08245	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BEN31_08250	COG0758	DNA mediated transformation
BEN31_08255	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BEN31_08260	COG0045	succinate-CoA ligase (ADP-forming) activity
BEN31_08265	COG2257	FlhB HrpN YscU SpaS Family
BEN31_08275	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BEN31_08280	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BEN31_08285	COG0335	large ribosomal subunit rRNA binding
BEN31_08290	COG0336	Belongs to the RNA methyltransferase TrmD family
BEN31_08295	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BEN31_08305	COG1837	Belongs to the UPF0109 family
BEN31_08310	COG0228	four-way junction DNA binding
BEN31_08315	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BEN31_08320	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
BEN31_08325	COG0552	protein localization to endoplasmic reticulum
BEN31_08330	COG1196	nuclear chromosome segregation
BEN31_08340	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BEN31_08345	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_08350	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
BEN31_08355	COG0416	fatty acid biosynthetic process
BEN31_08360	COG1349	DNA-binding transcription factor activity
BEN31_08365	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BEN31_08370	COG1760	l-serine dehydratase
BEN31_08375	COG1760	l-serine dehydratase
BEN31_08380	COG1461	Dihydroxyacetone kinase
BEN31_08385	COG1302	Protein conserved in bacteria
BEN31_08390	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BEN31_08400	COG1564	THIamine pyrophosphokinase
BEN31_08405	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BEN31_08410	COG1162	GTPase activity
BEN31_08415	COG2815	serine threonine protein kinase
BEN31_08415	COG0515	serine threonine protein kinase
BEN31_08420	COG0631	protein serine/threonine phosphatase activity
BEN31_08425	COG0820	rRNA (adenine-C2-)-methyltransferase activity
BEN31_08430	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BEN31_08430	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BEN31_08435	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BEN31_08440	COG0242	peptide deformylase activity
BEN31_08445	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BEN31_08450	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BEN31_08455	COG1758	RNA polymerase activity
BEN31_08460	COG0194	GDP metabolic process
BEN31_08465	COG2052	Domain of unknown function (DUF370)
BEN31_08470	COG1561	YicC-like family, N-terminal region
BEN31_08475	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
BEN31_08485	COG1648	precorrin-2 dehydrogenase activity
BEN31_08490	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
BEN31_08495	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BEN31_08500	COG0529	Catalyzes the synthesis of activated sulfate
BEN31_08505	COG2046	Belongs to the sulfate adenylyltransferase family
BEN31_08510	COG0306	phosphate transporter
BEN31_08515	COG0175	sulfate reduction
BEN31_08520	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
BEN31_08525	COG0284	orotidine-5'-phosphate decarboxylase activity
BEN31_08530	COG0167	dihydroorotate dehydrogenase activity
BEN31_08535	COG0543	2 iron, 2 sulfur cluster binding
BEN31_08540	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BEN31_08545	COG0505	Belongs to the CarA family
BEN31_08550	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
BEN31_08555	COG0540	Belongs to the ATCase OTCase family
BEN31_08560	COG2233	PERMEase
BEN31_08565	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
BEN31_08570	COG0564	pseudouridine synthase activity
BEN31_08575	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BEN31_08580	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BEN31_08585	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BEN31_08590	COG3599	regulation of cell shape
BEN31_08595	COG2302	S4 RNA-binding domain
BEN31_08600	COG0762	integral membrane protein
BEN31_08605	COG1799	cell septum assembly
BEN31_08610	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BEN31_08620	COG1873	PFAM PRC-barrel domain
BEN31_08625	COG1119	ATPase activity
BEN31_08635	COG3732	PTS system glucitol sorbitol-specific
BEN31_08640	COG3730	PTS system glucitol sorbitol-specific
BEN31_08655	COG2390	Transcriptional regulator
BEN31_08660	COG1191	sigma factor activity
BEN31_08665	COG1191	sigma factor activity
BEN31_08675	COG4412	M6 family metalloprotease domain protein
BEN31_08675	COG1404	Belongs to the peptidase S8 family
BEN31_08680	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BEN31_08685	COG0849	cell division
BEN31_08690	COG3856	small basic protein
BEN31_08695	COG3879	Bacterial protein of unknown function (DUF881)
BEN31_08700	COG3879	Bacterial protein of unknown function (DUF881)
BEN31_08705	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BEN31_08710	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BEN31_08715	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
BEN31_08720	COG0772	Belongs to the SEDS family
BEN31_08725	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BEN31_08730	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BEN31_08735	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BEN31_08740	COG0768	penicillin binding
BEN31_08750	COG4839	cell division protein FtsL
BEN31_08755	COG0275	rRNA processing
BEN31_08760	COG2001	Belongs to the MraZ family
BEN31_08765	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
BEN31_08770	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BEN31_08775	COG0454	-acetyltransferase
BEN31_08785	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BEN31_08790	COG1399	metal-binding, possibly nucleic acid-binding protein
BEN31_08800	COG3480	Lon protease (S16) C-terminal proteolytic domain
BEN31_08805	COG1752	Esterase of the alpha-beta hydrolase superfamily
BEN31_08810	COG3314	Sporulation integral membrane protein YlbJ
BEN31_08815	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BEN31_08820	COG0742	ribosomal rna small subunit methyltransferase
BEN31_08825	COG4471	UPF0298 protein
BEN31_08830	COG3679	Belongs to the UPF0342 family
BEN31_08850	COG2340	Cysteine-rich secretory protein family
BEN31_08855	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
BEN31_08865	COG3336	cytochrome c oxidase
BEN31_08870	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BEN31_08875	COG1845	cytochrome c oxidase, subunit III
BEN31_08880	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BEN31_08885	COG2010	Cytochrome c
BEN31_08885	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BEN31_08890	COG0109	protoheme IX farnesyltransferase activity
BEN31_08895	COG1612	heme a metabolic process
BEN31_08905	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
BEN31_08910	COG0772	Belongs to the SEDS family
BEN31_08915	COG4838	Belongs to the UPF0358 family
BEN31_08920	COG2066	Belongs to the glutaminase family
BEN31_08925	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
BEN31_08930	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BEN31_08940	COG4896	Protein conserved in bacteria
BEN31_08965	COG0483	inositol monophosphate 1-phosphatase activity
BEN31_08975	COG4493	Belongs to the UPF0637 family
BEN31_08980	COG4476	Belongs to the UPF0223 family
BEN31_08985	COG1982	Orn Lys Arg decarboxylase major
BEN31_08995	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_09000	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN31_09005	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN31_09010	COG0022	dehydrogenase e1 component
BEN31_09015	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BEN31_09030	COG0242	peptide deformylase activity
BEN31_09035	COG0561	phosphatase activity
BEN31_09045	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
BEN31_09050	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
BEN31_09055	COG0569	domain protein
BEN31_09060	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
BEN31_09060	COG2105	PFAM AIG2 family protein
BEN31_09065	COG3852	Histidine kinase
BEN31_09070	COG2002	toxin-antitoxin pair type II binding
BEN31_09075	COG1077	Cell shape determining protein MreB Mrl
BEN31_09080	COG2309	aminopeptidase activity
BEN31_09085	COG0488	(ABC) transporter
BEN31_09095	COG0681	Belongs to the peptidase S26 family
BEN31_09100	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_09100	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_09100	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_09105	COG1105	Belongs to the carbohydrate kinase PfkB family
BEN31_09110	COG1349	DNA-binding transcription factor activity
BEN31_09115	COG0577	efflux transmembrane transporter activity
BEN31_09120	COG1136	(ABC) transporter
BEN31_09125	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN31_09140	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BEN31_09145	COG0314	molybdopterin synthase activity
BEN31_09150	COG1763	Mo-molybdopterin cofactor biosynthetic process
BEN31_09155	COG0303	'Molybdopterin
BEN31_09160	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BEN31_09165	COG0746	molybdenum cofactor guanylyltransferase activity
BEN31_09180	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_09185	COG0450	alkyl hydroperoxide reductase
BEN31_09190	COG0668	transmembrane transport
BEN31_09200	COG1473	amidohydrolase
BEN31_09205	COG2171	N-acyltransferase activity
BEN31_09210	COG0716	FMN binding
BEN31_09220	COG0716	FMN binding
BEN31_09230	COG0583	DNA-binding transcription factor activity
BEN31_09235	COG0517	IMP dehydrogenase activity
BEN31_09245	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
BEN31_09250	COG4703	Protein of unknown function (DUF1797)
BEN31_09255	COG3546	catalase activity
BEN31_09260	COG2200	EAL domain
BEN31_09265	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_09270	COG1408	metallophosphoesterase
BEN31_09275	COG1376	ErfK ybiS ycfS ynhG family protein
BEN31_09280	COG2814	Major facilitator Superfamily
BEN31_09295	COG0784	Response regulator, receiver
BEN31_09295	COG0835	chemotaxis
BEN31_09305	COG1714	RDD family
BEN31_09310	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BEN31_09315	COG0436	Aminotransferase
BEN31_09320	COG4191	Histidine kinase
BEN31_09325	COG0768	penicillin binding
BEN31_09330	COG2340	Cysteine-rich secretory protein family
BEN31_09335	COG2084	Dehydrogenase
BEN31_09345	COG0840	transmembrane signaling receptor activity
BEN31_09350	COG1533	DNA photolyase activity
BEN31_09360	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BEN31_09365	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_09370	COG2190	(PTS) system
BEN31_09370	COG1263	PTS System
BEN31_09370	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_09375	COG3711	transcriptional antiterminator
BEN31_09380	COG1609	Transcriptional regulator
BEN31_09385	COG0006	proline dipeptidase activity
BEN31_09390	COG2217	Heavy metal translocating P-type atpase
BEN31_09395	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_09400	COG2244	polysaccharide biosynthetic process
BEN31_09405	COG3773	Cell wall hydrolase
BEN31_09415	COG4873	Protein conserved in bacteria
BEN31_09425	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
BEN31_09430	COG0602	queuosine metabolic process
BEN31_09435	COG0720	synthase
BEN31_09440	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BEN31_09445	COG3949	Membrane
BEN31_09450	COG0542	response to heat
BEN31_09455	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BEN31_09460	COG1360	Flagellar Motor Protein
BEN31_09465	COG1846	Transcriptional regulator
BEN31_09470	COG3852	Histidine kinase
BEN31_09480	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
BEN31_09485	COG0235	Class ii aldolase
BEN31_09490	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
BEN31_09495	COG1850	ribulose-bisphosphate carboxylase activity
BEN31_09500	COG0436	Aminotransferase
BEN31_09505	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
BEN31_09510	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
BEN31_09515	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BEN31_09520	COG5002	protein histidine kinase activity
BEN31_09525	COG3594	Acyltransferase
BEN31_09535	COG2323	membrane
BEN31_09540	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BEN31_09545	COG0501	Belongs to the peptidase M48B family
BEN31_09565	COG1191	sigma factor activity
BEN31_09570	COG0861	Integral membrane protein TerC family
BEN31_09575	COG0586	Pfam SNARE associated Golgi protein
BEN31_09580	COG5001	Diguanylate cyclase
BEN31_09580	COG3300	MHYT domain
BEN31_09585	COG1846	Transcriptional regulator
BEN31_09600	COG0789	Transcriptional regulator
BEN31_09610	COG0583	DNA-binding transcription factor activity
BEN31_09620	COG2239	Acts as a magnesium transporter
BEN31_09630	COG3212	peptidase
BEN31_09635	COG3212	peptidase
BEN31_09640	COG5002	protein histidine kinase activity
BEN31_09640	COG3850	Histidine kinase
BEN31_09645	COG0745	RESPONSE REGULATOR receiver
BEN31_09650	COG1404	Belongs to the peptidase S8 family
BEN31_09655	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BEN31_09660	COG0590	tRNA wobble adenosine to inosine editing
BEN31_09665	COG1764	response to oxidative stress
BEN31_09670	COG1846	Transcriptional regulator
BEN31_09675	COG1764	response to oxidative stress
BEN31_09685	COG0457	Tetratricopeptide repeat
BEN31_09690	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
BEN31_09695	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BEN31_09700	COG0788	formyltetrahydrofolate deformylase activity
BEN31_09710	COG2076	Multidrug Resistance protein
BEN31_09715	COG2076	Multidrug Resistance protein
BEN31_09725	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN31_09740	COG1695	Transcriptional regulator
BEN31_09745	COG1607	acyl-coa hydrolase
BEN31_09750	COG1834	amidinotransferase
BEN31_09755	COG4608	Belongs to the ABC transporter superfamily
BEN31_09760	COG0791	NLP P60 protein
BEN31_09765	COG4948	Mandelate Racemase Muconate Lactonizing
BEN31_09770	COG1619	proteins homologs of microcin C7 resistance protein MccF
BEN31_09775	COG4166	transmembrane transport
BEN31_09780	COG0444	Belongs to the ABC transporter superfamily
BEN31_09785	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BEN31_09790	COG0601	transmembrane transport
BEN31_09795	COG2362	D-Aminopeptidase
BEN31_09800	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BEN31_09805	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN31_09810	COG0346	lactoylglutathione lyase activity
BEN31_09815	COG0531	amino acid
BEN31_09825	COG2390	Transcriptional regulator
BEN31_09830	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_09835	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_09840	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN31_09845	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN31_09850	COG0022	dehydrogenase e1 component
BEN31_09850	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN31_09855	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BEN31_09875	COG3775	system Galactitol-specific IIC component
BEN31_09885	COG0405	Gamma-glutamyltransferase
BEN31_09895	COG1392	Phosphate transport regulator
BEN31_09900	COG0306	phosphate transporter
BEN31_09915	COG3409	Peptidoglycan-binding domain 1 protein
BEN31_09915	COG5632	N-Acetylmuramoyl-L-alanine amidase
BEN31_09920	COG2856	Zn peptidase
BEN31_09925	COG4195	phage-related replication protein
BEN31_09940	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BEN31_09945	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BEN31_09955	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BEN31_09975	COG0457	Tetratricopeptide repeat
BEN31_09985	COG2807	transmembrane transport
BEN31_09990	COG0583	DNA-binding transcription factor activity
BEN31_10005	COG3173	Aminoglycoside phosphotransferase
BEN31_10025	COG0457	Tetratricopeptide repeat
BEN31_10055	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BEN31_10070	COG0825	malonyl-CoA metabolic process
BEN31_10080	COG0604	alcohol dehydrogenase
BEN31_10090	COG0626	cystathionine gamma-synthase activity
BEN31_10095	COG0626	cystathionine gamma-synthase activity
BEN31_10100	COG2382	esterase
BEN31_10105	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
BEN31_10110	COG2153	protein acetylation
BEN31_10175	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BEN31_10180	COG0351	phosphomethylpyrimidine kinase
BEN31_10185	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BEN31_10190	COG2022	thiamine diphosphate biosynthetic process
BEN31_10195	COG2104	thiamine diphosphate biosynthetic process
BEN31_10205	COG0352	thiamine-phosphate diphosphorylase activity
BEN31_10210	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BEN31_10215	COG0475	glutathione-regulated potassium exporter activity
BEN31_10215	COG0569	domain protein
BEN31_10220	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BEN31_10225	COG0564	pseudouridine synthase activity
BEN31_10230	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BEN31_10235	COG2357	RelA SpoT domain protein
BEN31_10245	COG4116	CYTH
BEN31_10250	COG0741	lytic transglycosylase activity
BEN31_10255	COG2346	COG2346, Truncated hemoglobins
BEN31_10265	COG1164	Oligoendopeptidase f
BEN31_10275	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN31_10280	COG4862	establishment of competence for transformation
BEN31_10285	COG0861	Integral membrane protein TerC family
BEN31_10290	COG1393	Belongs to the ArsC family
BEN31_10295	COG0456	acetyltransferase
BEN31_10305	COG4608	Belongs to the ABC transporter superfamily
BEN31_10310	COG0444	Belongs to the ABC transporter superfamily
BEN31_10315	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BEN31_10320	COG0601	transmembrane transport
BEN31_10325	COG4166	transmembrane transport
BEN31_10330	COG0180	Tryptophanyl-tRNA synthetase
BEN31_10340	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BEN31_10345	COG0601	transmembrane transport
BEN31_10355	COG4608	Belongs to the ABC transporter superfamily
BEN31_10360	COG0444	Belongs to the ABC transporter superfamily
BEN31_10365	COG5504	Zn-dependent protease
BEN31_10370	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BEN31_10375	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BEN31_10390	COG1744	ABC transporter substrate-binding protein PnrA-like
BEN31_10400	COG2267	carboxylic ester hydrolase activity
BEN31_10410	COG2814	Major facilitator Superfamily
BEN31_10420	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
BEN31_10425	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BEN31_10430	COG0505	Belongs to the CarA family
BEN31_10435	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BEN31_10440	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BEN31_10450	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BEN31_10460	COG0277	FAD linked oxidase domain protein
BEN31_10465	COG2151	metal-sulfur cluster biosynthetic enzyme
BEN31_10470	COG1073	alpha beta
BEN31_10475	COG0561	phosphatase activity
BEN31_10495	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BEN31_10500	COG1307	EDD domain protein, DegV family
BEN31_10505	COG0840	transmembrane signaling receptor activity
BEN31_10515	COG2996	Protein conserved in bacteria
BEN31_10520	COG1666	GTP binding
BEN31_10525	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BEN31_10525	COG0646	methionine synthase
BEN31_10530	COG0646	methionine synthase
BEN31_10530	COG1410	methionine synthase
BEN31_10560	COG0076	glutamate decarboxylase activity
BEN31_10585	COG2207	Transcriptional regulator
BEN31_10585	COG1917	Cupin 2, conserved barrel domain protein
BEN31_10590	COG0534	Mate efflux family protein
BEN31_10595	COG1562	ergosterol biosynthetic process
BEN31_10610	COG0367	asparagine synthase
BEN31_10625	COG0179	Fumarylacetoacetate (FAA) hydrolase
BEN31_10635	COG5337	Spore coat protein CotH
BEN31_10675	COG1403	HNH endonuclease
BEN31_10680	COG0419	ATPase involved in DNA repair
BEN31_10685	COG0420	3'-5' exonuclease activity
BEN31_10690	COG1074	ATP-dependent DNA helicase activity
BEN31_10695	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
BEN31_10700	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
BEN31_10705	COG2259	Doxx family
BEN31_10720	COG3180	Ammonia monooxygenase
BEN31_10725	COG0681	Belongs to the peptidase S26 family
BEN31_10730	COG0398	Pfam SNARE associated Golgi protein
BEN31_10740	COG1316	TRANSCRIPTIONal
BEN31_10745	COG4607	ABC-type enterochelin transport system periplasmic component
BEN31_10750	COG4604	ABC transporter, ATP-binding protein
BEN31_10755	COG4605	iron ion homeostasis
BEN31_10760	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BEN31_10765	COG2732	(Barnase) inhibitor
BEN31_10770	COG2814	Major facilitator Superfamily
BEN31_10775	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN31_10790	COG4903	ComK protein
BEN31_10800	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_10805	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN31_10805	COG0723	plastoquinol--plastocyanin reductase activity
BEN31_10810	COG0840	transmembrane signaling receptor activity
BEN31_10815	COG0406	alpha-ribazole phosphatase activity
BEN31_10820	COG1404	Belongs to the peptidase S8 family
BEN31_10825	COG0501	Belongs to the peptidase M48B family
BEN31_10835	COG0318	PFAM AMP-dependent synthetase and ligase
BEN31_10840	COG0095	Lipoate-protein ligase
BEN31_10845	COG1234	tRNA 3'-trailer cleavage
BEN31_10855	COG1301	dicarboxylic acid transport
BEN31_10860	COG1363	Peptidase, m42
BEN31_10865	COG1511	domain protein
BEN31_10870	COG1309	transcriptional regulator
BEN31_10885	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BEN31_10890	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BEN31_10895	COG2329	Antibiotic biosynthesis monooxygenase
BEN31_10905	COG1473	amidohydrolase
BEN31_10915	COG4473	ABC transporter
BEN31_10920	COG1131	(ABC) transporter
BEN31_10925	COG0537	adenosine 5'-monophosphoramidase activity
BEN31_10930	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BEN31_10945	COG4980	gas vesicle protein
BEN31_10950	COG1846	Transcriptional regulator
BEN31_10970	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN31_10980	COG3481	metal-dependent phosphohydrolase, HD sub domain
BEN31_10985	COG4717	serine-type aminopeptidase activity
BEN31_10990	COG0420	3'-5' exonuclease activity
BEN31_11000	COG1024	Enoyl-CoA hydratase
BEN31_11010	COG0490	domain, Protein
BEN31_11015	COG0475	glutathione-regulated potassium exporter activity
BEN31_11025	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BEN31_11030	COG0561	phosphatase activity
BEN31_11035	COG3679	Belongs to the UPF0342 family
BEN31_11040	COG4399	Belongs to the UPF0754 family
BEN31_11045	COG0189	ligase activity
BEN31_11050	COG0189	ligase activity
BEN31_11060	COG2508	Transcriptional regulator
BEN31_11065	COG3842	ATPase activity
BEN31_11075	COG0702	epimerase
BEN31_11080	COG1132	(ABC) transporter
BEN31_11085	COG1132	(ABC) transporter
BEN31_11090	COG0589	response to stress
BEN31_11100	COG0726	polysaccharide deacetylase
BEN31_11105	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BEN31_11110	COG0668	transmembrane transport
BEN31_11115	COG0584	glycerophosphoryl diester phosphodiesterase
BEN31_11120	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BEN31_11135	COG1253	flavin adenine dinucleotide binding
BEN31_11140	COG0789	Transcriptional regulator
BEN31_11145	COG1253	flavin adenine dinucleotide binding
BEN31_11150	COG0204	Acyl-transferase
BEN31_11155	COG1595	DNA-templated transcription, initiation
BEN31_11170	COG1388	LysM domain
BEN31_11170	COG0791	NLP P60 protein
BEN31_11175	COG1785	Belongs to the alkaline phosphatase family
BEN31_11180	COG2719	SpoVR family
BEN31_11185	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BEN31_11185	COG1017	nitric oxide dioxygenase activity
BEN31_11190	COG1959	2 iron, 2 sulfur cluster binding
BEN31_11195	COG0753	catalase activity
BEN31_11215	COG2197	response regulator
BEN31_11220	COG4585	Histidine kinase
BEN31_11220	COG2203	Gaf domain
BEN31_11225	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BEN31_11230	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BEN31_11235	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BEN31_11240	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BEN31_11245	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
BEN31_11250	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BEN31_11255	COG3835	regulator
BEN31_11270	COG3153	acetyltransferase
BEN31_11270	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BEN31_11275	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BEN31_11285	COG0564	pseudouridine synthase activity
BEN31_11290	COG3764	Sortase (surface protein transpeptidase)
BEN31_11295	COG0737	Belongs to the 5'-nucleotidase family
BEN31_11295	COG4085	toxin activity
BEN31_11295	COG1525	nuclease
BEN31_11300	COG5002	protein histidine kinase activity
BEN31_11305	COG5577	PFAM Coat F domain
BEN31_11330	COG3706	GGDEF domain
BEN31_11335	COG1278	Cold shock
BEN31_11345	COG0655	NAD(P)H dehydrogenase (quinone) activity
BEN31_11350	COG2814	Major facilitator Superfamily
BEN31_11355	COG1566	PFAM secretion protein HlyD family protein
BEN31_11360	COG2718	Belongs to the UPF0229 family
BEN31_11365	COG2766	serine protein kinase
BEN31_11375	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BEN31_11385	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BEN31_11390	COG3382	B3 4 domain protein
BEN31_11420	COG1131	(ABC) transporter
BEN31_11435	COG0681	Belongs to the peptidase S26 family
BEN31_11440	COG1368	sulfuric ester hydrolase activity
BEN31_11580	COG0735	belongs to the Fur family
BEN31_11585	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BEN31_11590	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
BEN31_11595	COG4129	membrane
BEN31_11610	COG0747	negative chemotaxis
BEN31_11615	COG4608	Belongs to the ABC transporter superfamily
BEN31_11620	COG0444	Belongs to the ABC transporter superfamily
BEN31_11625	COG1132	(ABC) transporter
BEN31_11630	COG3557	Belongs to the UPF0374 family
BEN31_11645	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_11655	COG1194	a g-specific adenine glycosylase
BEN31_11660	COG1988	membrane-bound metal-dependent
BEN31_11705	COG1191	sigma factor activity
BEN31_11710	COG2140	Oxalate decarboxylase
BEN31_11725	COG4485	Bacterial membrane protein, YfhO
BEN31_11730	COG0463	Glycosyl transferase, family 2
BEN31_11750	COG2137	regulation of response to DNA damage stimulus
BEN31_11755	COG1090	epimerase
BEN31_11770	COG0778	Nitroreductase
BEN31_11790	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
BEN31_11790	COG0392	lysyltransferase activity
BEN31_11795	COG1846	Transcriptional regulator
BEN31_11805	COG2318	DinB family
BEN31_11820	COG0492	ferredoxin-NADP+ reductase activity
BEN31_11825	COG2755	lipolytic protein G-D-S-L family
BEN31_11830	COG4637	Psort location Cytoplasmic, score
BEN31_11840	COG1309	transcriptional regulator
BEN31_11845	COG2076	Multidrug Resistance protein
BEN31_11850	COG2076	Multidrug Resistance protein
BEN31_11890	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BEN31_11905	COG2814	Major facilitator Superfamily
BEN31_11910	COG0789	Transcriptional regulator
BEN31_11920	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BEN31_11925	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BEN31_11935	COG0598	Magnesium transport protein CorA
BEN31_11945	COG0726	polysaccharide deacetylase
BEN31_11955	COG0535	radical SAM domain protein
BEN31_11960	COG0668	transmembrane transport
BEN31_11970	COG0217	transcriptional regulatory protein
BEN31_11990	COG4152	abc transporter atp-binding protein
BEN31_12005	COG0387	Pfam Sodium calcium exchanger
BEN31_12015	COG0477	Major facilitator Superfamily
BEN31_12020	COG1295	ribonuclease BN
BEN31_12025	COG4980	gas vesicle protein
BEN31_12030	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BEN31_12035	COG1115	amino acid carrier protein
BEN31_12040	COG4840	Belongs to the UPF0435 family
BEN31_12045	COG0693	protein deglycase activity
BEN31_12050	COG0737	Belongs to the 5'-nucleotidase family
BEN31_12060	COG2188	Transcriptional regulator
BEN31_12065	COG0366	Alpha amylase catalytic
BEN31_12070	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_12070	COG1263	PTS System
BEN31_12080	COG0840	transmembrane signaling receptor activity
BEN31_12085	COG0076	glutamate decarboxylase activity
BEN31_12095	COG1368	sulfuric ester hydrolase activity
BEN31_12110	COG3739	integral membrane protein
BEN31_12115	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_12115	COG1263	PTS System
BEN31_12120	COG0024	Methionine aminopeptidase
BEN31_12130	COG2258	MOSC domain
BEN31_12135	COG1254	Belongs to the acylphosphatase family
BEN31_12140	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
BEN31_12145	COG1695	Transcriptional regulator
BEN31_12150	COG3479	Phenolic acid decarboxylase
BEN31_12160	COG2851	Citrate transporter
BEN31_12165	COG3181	Tripartite tricarboxylate transporter family receptor
BEN31_12170	COG4565	transcriptional regulatory protein
BEN31_12175	COG3290	protein histidine kinase activity
BEN31_12185	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN31_12185	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN31_12195	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BEN31_12200	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BEN31_12200	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BEN31_12220	COG2130	NADP-dependent
BEN31_12225	COG0513	Belongs to the DEAD box helicase family
BEN31_12230	COG0488	(ABC) transporter
BEN31_12235	COG2814	Major facilitator Superfamily
BEN31_12240	COG0789	Transcriptional regulator
BEN31_12245	COG1469	GTP cyclohydrolase I activity
BEN31_12250	COG0488	(ABC) transporter
BEN31_12255	COG0463	Glycosyl transferase, family 2
BEN31_12255	COG0457	Tetratricopeptide repeat
BEN31_12260	COG0531	amino acid
BEN31_12265	COG0471	metal ion transport
BEN31_12275	COG2223	nitrite transmembrane transporter activity
BEN31_12280	COG1442	glycosyl transferase family 8
BEN31_12285	COG1216	Glycosyl transferase, family 2
BEN31_12290	COG1442	glycosyl transferase family 8
BEN31_12295	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BEN31_12300	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BEN31_12325	COG2211	Major facilitator Superfamily
BEN31_12335	COG1486	melibiose metabolic process
BEN31_12350	COG0492	ferredoxin-NADP+ reductase activity
BEN31_12370	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BEN31_12390	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BEN31_12395	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BEN31_12400	COG1597	lipid kinase activity
BEN31_12405	COG1957	nucleoside hydrolase
BEN31_12410	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN31_12415	COG1309	transcriptional regulator
BEN31_12420	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BEN31_12425	COG0154	amidase activity
BEN31_12430	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BEN31_12435	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BEN31_12440	COG1285	pathogenesis
BEN31_12445	COG1785	Belongs to the alkaline phosphatase family
BEN31_12450	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BEN31_12480	COG1960	acyl-CoA dehydrogenase activity
BEN31_12495	COG1250	3-hydroxyacyl-CoA dehydrogenase
BEN31_12525	COG4851	CamS sex pheromone cAM373 precursor
BEN31_12530	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BEN31_12535	COG0210	DNA helicase
BEN31_12540	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
BEN31_12555	COG0069	glutamate synthase activity
BEN31_12560	COG4496	protein, YerC YecD
BEN31_12565	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
BEN31_12575	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BEN31_12580	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BEN31_12585	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BEN31_12590	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
BEN31_12610	COG0151	Belongs to the GarS family
BEN31_12615	COG0138	bifunctional purine biosynthesis protein purh
BEN31_12620	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BEN31_12625	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BEN31_12630	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BEN31_12635	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BEN31_12640	COG0047	phosphoribosylformylglycinamidine synthase activity
BEN31_12645	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BEN31_12650	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BEN31_12655	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BEN31_12660	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BEN31_12665	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BEN31_12675	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
BEN31_12680	COG3064	Membrane
BEN31_12685	COG2252	PERMEase
BEN31_12690	COG0583	DNA-binding transcription factor activity
BEN31_12695	COG2814	Major facilitator Superfamily
BEN31_12735	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
BEN31_12740	COG0662	Cupin 2, conserved barrel domain protein
BEN31_12750	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN31_12760	COG2207	Transcriptional regulator
BEN31_12765	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BEN31_12770	COG1917	Cupin 2, conserved barrel domain protein
BEN31_12770	COG2207	Transcriptional regulator
BEN31_12775	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BEN31_12780	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BEN31_12780	COG0519	Catalyzes the synthesis of GMP from XMP
BEN31_12785	COG1305	Transglutaminase-like
BEN31_12790	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
BEN31_12795	COG0714	Associated with various cellular activities
BEN31_12800	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
BEN31_12805	COG1113	amino acid transport
BEN31_12810	COG2132	Multicopper oxidase
BEN31_12825	COG0823	Involved in the tonB-independent uptake of proteins
BEN31_12830	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BEN31_12850	COG2808	Putative FMN-binding domain
BEN31_12855	COG0456	acetyltransferase
BEN31_12860	COG1846	Transcriptional regulator
BEN31_12875	COG0459	protein refolding
BEN31_12880	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BEN31_12885	COG1266	CAAX protease self-immunity
BEN31_12895	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
BEN31_12900	COG0805	protein transport
BEN31_12905	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BEN31_12910	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
BEN31_12915	COG0315	cyclic pyranopterin monophosphate synthase activity
BEN31_12920	COG0488	(ABC) transporter
BEN31_12925	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BEN31_12930	COG0456	acetyltransferase
BEN31_12935	COG1214	PFAM Peptidase M22, glycoprotease
BEN31_12940	COG0802	atpase or kinase
BEN31_12945	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BEN31_12985	COG1301	dicarboxylic acid transport
BEN31_12995	COG0697	spore germination
BEN31_13000	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
BEN31_13020	COG0667	Aldo Keto reductase
BEN31_13025	COG0583	DNA-binding transcription factor activity
BEN31_13030	COG0456	acetyltransferase
BEN31_13040	COG1396	sequence-specific DNA binding
BEN31_13055	COG0778	Nitroreductase
BEN31_13060	COG1846	Transcriptional regulator
BEN31_13065	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BEN31_13100	COG2814	Major facilitator Superfamily
BEN31_13120	COG0252	asparaginase activity
BEN31_13155	COG0477	Major facilitator Superfamily
BEN31_13170	COG0789	Transcriptional regulator
BEN31_13175	COG1064	alcohol dehydrogenase
BEN31_13180	COG1329	Transcriptional regulator
BEN31_13185	COG1278	Cold shock
BEN31_13190	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BEN31_13190	COG0456	acetyltransferase
BEN31_13200	COG0604	alcohol dehydrogenase
BEN31_13205	COG1819	glycosyl
BEN31_13215	COG2807	transmembrane transport
BEN31_13225	COG2249	NAD(P)H dehydrogenase (quinone) activity
BEN31_13230	COG0583	DNA-binding transcription factor activity
BEN31_13270	COG3284	Transcriptional regulator
BEN31_13275	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN31_13280	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN31_13285	COG0022	dehydrogenase e1 component
BEN31_13295	COG3091	SprT-like family
BEN31_13300	COG2183	response to ionizing radiation
BEN31_13305	COG2208	phosphoserine phosphatase activity
BEN31_13310	COG1191	sigma factor activity
BEN31_13315	COG2172	sigma factor antagonist activity
BEN31_13320	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_13325	COG2208	phosphoserine phosphatase activity
BEN31_13330	COG2172	sigma factor antagonist activity
BEN31_13335	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_13340	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_13345	COG2337	Toxic component of a toxin-antitoxin (TA) module
BEN31_13350	COG0864	Transcriptional regulator
BEN31_13355	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BEN31_13360	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BEN31_13365	COG0736	holo-[acyl-carrier-protein] synthase activity
BEN31_13370	COG0705	Rhomboid family
BEN31_13375	COG3428	Bacterial PH domain
BEN31_13380	COG3402	PFAM membrane-flanked domain
BEN31_13385	COG0513	Belongs to the DEAD box helicase family
BEN31_13400	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BEN31_13405	COG1181	Belongs to the D-alanine--D-alanine ligase family
BEN31_13410	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_13425	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
BEN31_13430	COG1131	(ABC) transporter
BEN31_13435	COG1301	dicarboxylic acid transport
BEN31_13440	COG0628	permease
BEN31_13445	COG1301	dicarboxylic acid transport
BEN31_13450	COG4565	transcriptional regulatory protein
BEN31_13455	COG3290	protein histidine kinase activity
BEN31_13460	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BEN31_13470	COG2261	transglycosylase associated protein
BEN31_13475	COG1914	H( )-stimulated, divalent metal cation uptake system
BEN31_13480	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN31_13505	COG5444	nuclease activity
BEN31_13510	COG0028	Belongs to the TPP enzyme family
BEN31_13515	COG0531	amino acid
BEN31_13525	COG1215	transferase activity, transferring glycosyl groups
BEN31_13530	COG5298	Protein conserved in bacteria
BEN31_13535	COG3706	GGDEF domain
BEN31_13540	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
BEN31_13545	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BEN31_13545	COG0551	DNA topoisomerase type I activity
BEN31_13550	COG0473	3-isopropylmalate dehydrogenase activity
BEN31_13555	COG0697	spore germination
BEN31_13560	COG1917	Cupin 2, conserved barrel domain protein
BEN31_13560	COG2207	Transcriptional regulator
BEN31_13565	COG1802	Transcriptional regulator
BEN31_13570	COG2814	Major facilitator Superfamily
BEN31_13590	COG3871	stress protein (general stress protein 26)
BEN31_13595	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_13600	COG2226	methyltransferase
BEN31_13605	COG3711	transcriptional antiterminator
BEN31_13615	COG2755	lipolytic protein G-D-S-L family
BEN31_13620	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BEN31_13625	COG1414	Transcriptional regulator
BEN31_13630	COG1984	allophanate hydrolase subunit 2
BEN31_13635	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BEN31_13640	COG4336	lyase activity
BEN31_13645	COG1914	H( )-stimulated, divalent metal cation uptake system
BEN31_13650	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BEN31_13655	COG0561	phosphatase activity
BEN31_13665	COG0346	lactoylglutathione lyase activity
BEN31_13685	COG0840	transmembrane signaling receptor activity
BEN31_13690	COG0246	Mannitol dehydrogenase
BEN31_13695	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_13700	COG2213	PTS system mannitol-specific
BEN31_13705	COG1276	copper resistance
BEN31_13705	COG2372	response to copper ion
BEN31_13710	COG4549	nuclear export factor GLE1
BEN31_13715	COG2249	NAD(P)H dehydrogenase (quinone) activity
BEN31_13720	COG1012	belongs to the aldehyde dehydrogenase family
BEN31_13725	COG0531	amino acid
BEN31_13730	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BEN31_13735	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN31_13740	COG0640	Transcriptional regulator
BEN31_13750	COG1309	transcriptional regulator
BEN31_13755	COG2814	Major facilitator Superfamily
BEN31_13760	COG0527	aspartate kinase activity
BEN31_13765	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_13770	COG2079	MmgE PrpD family protein
BEN31_13780	COG1126	abc transporter atp-binding protein
BEN31_13785	COG0765	amino acid transport
BEN31_13790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_13805	COG5434	Belongs to the glycosyl hydrolase 28 family
BEN31_13810	COG3104	oligopeptide transport
BEN31_13815	COG0833	amino acid
BEN31_13820	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_13825	COG0765	amino acid transport
BEN31_13830	COG1126	abc transporter atp-binding protein
BEN31_13835	COG2364	Membrane
BEN31_13845	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN31_13850	COG0697	spore germination
BEN31_13865	COG4555	ABC transporter
BEN31_13880	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
BEN31_13895	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BEN31_13900	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BEN31_13905	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BEN31_13915	COG1176	ABC-type spermidine putrescine transport system, permease component I
BEN31_13920	COG3842	ATPase activity
BEN31_13945	COG3209	COG3209 Rhs family protein
BEN31_13950	COG0840	transmembrane signaling receptor activity
BEN31_13950	COG3290	protein histidine kinase activity
BEN31_13960	COG2746	aminoglycoside 3-N-acetyltransferase activity
BEN31_13965	COG1522	sequence-specific DNA binding
BEN31_13970	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
BEN31_13980	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_13985	COG0765	amino acid transport
BEN31_13990	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
BEN31_13995	COG2508	Transcriptional regulator
BEN31_14000	COG1012	belongs to the aldehyde dehydrogenase family
BEN31_14005	COG0506	proline dehydrogenase activity
BEN31_14010	COG3541	Predicted nucleotidyltransferase
BEN31_14020	COG3458	cephalosporin-C deacetylase activity
BEN31_14025	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BEN31_14030	COG0583	DNA-binding transcription factor activity
BEN31_14035	COG2226	methyltransferase
BEN31_14040	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BEN31_14045	COG0477	Major facilitator Superfamily
BEN31_14055	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BEN31_14060	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BEN31_14065	COG3665	Urea carboxylase-associated protein
BEN31_14070	COG1113	amino acid transport
BEN31_14075	COG3403	YqcI/YcgG family
BEN31_14080	COG1280	lysine exporter protein (LysE YggA)
BEN31_14085	COG0738	Major facilitator superfamily
BEN31_14090	COG0673	inositol 2-dehydrogenase activity
BEN31_14095	COG0561	phosphatase activity
BEN31_14100	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BEN31_14105	COG1609	Transcriptional regulator
BEN31_14110	COG1620	l-lactate permease
BEN31_14115	COG0039	L-malate dehydrogenase activity
BEN31_14120	COG1288	antiporter activity
BEN31_14125	COG1473	amidohydrolase
BEN31_14140	COG2113	Glycine betaine
BEN31_14145	COG4176	ABC-type proline glycine betaine transport system permease component
BEN31_14150	COG4175	Glycine betaine
BEN31_14150	COG0517	IMP dehydrogenase activity
BEN31_14155	COG3853	Toxic anion resistance protein (TelA)
BEN31_14185	COG0861	Integral membrane protein TerC family
BEN31_14190	COG2310	stress, protein
BEN31_14195	COG2310	stress, protein
BEN31_14200	COG2310	stress, protein
BEN31_14205	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BEN31_14215	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_14220	COG3773	Cell wall hydrolase
BEN31_14240	COG1668	transmembrane transport
BEN31_14245	COG4555	ABC transporter
BEN31_14250	COG3279	Response regulator of the LytR AlgR family
BEN31_14255	COG3290	protein histidine kinase activity
BEN31_14260	COG0667	Aldo Keto reductase
BEN31_14270	COG1405	negative regulation of cell septum assembly
BEN31_14270	COG3012	SEC-C Motif Domain Protein
BEN31_14275	COG0784	Response regulator, receiver
BEN31_14280	COG4191	Histidine kinase
BEN31_14285	COG2066	Belongs to the glutaminase family
BEN31_14290	COG1115	amino acid carrier protein
BEN31_14295	COG0596	Alpha beta hydrolase
BEN31_14310	COG0531	amino acid
BEN31_14315	COG0318	PFAM AMP-dependent synthetase and ligase
BEN31_14320	COG1846	Transcriptional regulator
BEN31_14325	COG1063	alcohol dehydrogenase
BEN31_14330	COG1917	Cupin 2, conserved barrel domain protein
BEN31_14335	COG1309	transcriptional regulator
BEN31_14345	COG1404	Belongs to the peptidase S8 family
BEN31_14365	COG2814	Major facilitator Superfamily
BEN31_14375	COG1695	Transcriptional regulator
BEN31_14380	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BEN31_14385	COG2040	homocysteine
BEN31_14390	COG0833	amino acid
BEN31_14405	COG1404	Belongs to the peptidase S8 family
BEN31_14410	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_14410	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_14415	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_14420	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BEN31_14425	COG0383	alpha-mannosidase activity
BEN31_14430	COG1940	carbohydrate kinase activity
BEN31_14435	COG3711	transcriptional antiterminator
BEN31_14435	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_14450	COG2723	6-phospho-beta-galactosidase activity
BEN31_14455	COG1263	PTS System
BEN31_14455	COG2190	(PTS) system
BEN31_14455	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_14460	COG3711	transcriptional antiterminator
BEN31_14470	COG0531	amino acid
BEN31_14480	COG0371	Dehydrogenase
BEN31_14485	COG0656	L-ascorbic acid biosynthetic process
BEN31_14495	COG1683	Conserved Protein
BEN31_14505	COG1846	Transcriptional regulator
BEN31_14515	COG2814	Major facilitator Superfamily
BEN31_14520	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
BEN31_14525	COG0730	response to heat
BEN31_14530	COG0425	Belongs to the sulfur carrier protein TusA family
BEN31_14535	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BEN31_14535	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BEN31_14540	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BEN31_14540	COG0425	Belongs to the sulfur carrier protein TusA family
BEN31_14545	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BEN31_14550	COG2210	Belongs to the sulfur carrier protein TusA family
BEN31_14555	COG1937	Protein conserved in bacteria
BEN31_14575	COG1331	Highly conserved protein containing a thioredoxin domain
BEN31_14580	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN31_14585	COG2271	Major facilitator Superfamily
BEN31_14590	COG0584	glycerophosphoryl diester phosphodiesterase
BEN31_14595	COG1113	amino acid transport
BEN31_14610	COG1309	transcriptional regulator
BEN31_14630	COG2311	Membrane
BEN31_14650	COG1131	(ABC) transporter
BEN31_14690	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BEN31_14695	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BEN31_14700	COG4856	YbbR-like protein
BEN31_14705	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
BEN31_14710	COG5662	AntiSigma factor
BEN31_14715	COG1595	DNA-templated transcription, initiation
BEN31_14750	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
BEN31_14755	COG1737	Transcriptional regulator
BEN31_14760	COG1263	PTS System
BEN31_14760	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_14765	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
BEN31_14770	COG1472	Belongs to the glycosyl hydrolase 3 family
BEN31_14775	COG3876	Protein conserved in bacteria
BEN31_14780	COG0385	Bile acid
BEN31_14785	COG0659	secondary active sulfate transmembrane transporter activity
BEN31_14815	COG0726	polysaccharide deacetylase
BEN31_14820	COG2194	sulfuric ester hydrolase activity
BEN31_14830	COG0489	protein tyrosine kinase activity
BEN31_14835	COG0860	N-Acetylmuramoyl-L-alanine amidase
BEN31_14865	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN31_14870	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BEN31_14875	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BEN31_14880	COG0101	tRNA pseudouridine synthase activity
BEN31_14885	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BEN31_14890	COG1122	ATPase activity
BEN31_14895	COG1122	ATPase activity
BEN31_14900	COG0203	ribosomal protein L17
BEN31_14905	COG0202	RNA polymerase activity
BEN31_14910	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BEN31_14915	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BEN31_14920	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BEN31_14925	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BEN31_14930	COG2163	COG2163 Ribosomal protein L14E L6E L27E
BEN31_14935	COG0024	Methionine aminopeptidase
BEN31_14940	COG0563	adenylate kinase activity
BEN31_14945	COG0201	protein transport
BEN31_14950	COG0200	Binds to the 23S rRNA
BEN31_14955	COG1841	ribosomal large subunit assembly
BEN31_14960	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BEN31_14965	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BEN31_14970	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BEN31_14975	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BEN31_14980	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BEN31_14985	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BEN31_14990	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BEN31_14995	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BEN31_15000	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BEN31_15005	COG0255	Belongs to the universal ribosomal protein uL29 family
BEN31_15010	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BEN31_15015	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BEN31_15020	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
BEN31_15025	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BEN31_15030	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BEN31_15035	COG0089	rRNA binding
BEN31_15040	COG0088	Forms part of the polypeptide exit tunnel
BEN31_15045	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BEN31_15050	COG0051	transcription antitermination factor activity, RNA binding
BEN31_15055	COG0596	Alpha beta hydrolase
BEN31_15060	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BEN31_15065	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BEN31_15070	COG0049	tRNA binding
BEN31_15075	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BEN31_15080	COG1358	cellular component organization or biogenesis
BEN31_15085	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BEN31_15090	COG0085	RNA polymerase activity
BEN31_15095	COG2813	Specifically methylates the guanine in position
BEN31_15100	COG0222	ribosome binding
BEN31_15105	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BEN31_15110	COG0081	regulation of translation
BEN31_15115	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
BEN31_15120	COG0250	Participates in transcription elongation, termination and antitermination
BEN31_15125	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BEN31_15130	COG1595	DNA-templated transcription, initiation
BEN31_15135	COG3688	RNA-binding protein containing a PIN domain
BEN31_15140	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BEN31_15145	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
BEN31_15150	COG0215	cysteine-tRNA ligase activity
BEN31_15155	COG1045	serine acetyltransferase
BEN31_15160	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BEN31_15165	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BEN31_15170	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
BEN31_15175	COG4956	integral membrane protein (PIN domain superfamily)
BEN31_15180	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
BEN31_15185	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BEN31_15190	COG0542	response to heat
BEN31_15195	COG3869	Catalyzes the specific phosphorylation of arginine residues in
BEN31_15200	COG3880	PFAM UvrB UvrC protein
BEN31_15205	COG4463	regulation of RNA biosynthetic process
BEN31_15285	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BEN31_15290	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BEN31_15295	COG1396	sequence-specific DNA binding
BEN31_15300	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BEN31_15305	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BEN31_15310	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BEN31_15315	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BEN31_15320	COG0512	Glutamine amidotransferase of anthranilate synthase
BEN31_15325	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BEN31_15330	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BEN31_15335	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN31_15340	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BEN31_15345	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
BEN31_15350	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BEN31_15360	COG0037	tRNA processing
BEN31_15365	COG0515	serine threonine protein kinase
BEN31_15370	COG2304	oxidoreductase activity
BEN31_15375	COG2208	phosphoserine phosphatase activity
BEN31_15390	COG1098	S1 RNA binding domain
BEN31_15395	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BEN31_15410	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BEN31_15415	COG3956	TIGRFAM MazG family protein
BEN31_15420	COG2244	polysaccharide biosynthetic process
BEN31_15425	COG2002	toxin-antitoxin pair type II binding
BEN31_15430	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BEN31_15440	COG0193	aminoacyl-tRNA hydrolase activity
BEN31_15445	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BEN31_15450	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BEN31_15460	COG2088	sporulation resulting in formation of a cellular spore
BEN31_15465	COG0251	oxidation-reduction process
BEN31_15470	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BEN31_15475	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BEN31_15485	COG4466	Protein conserved in bacteria
BEN31_15495	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BEN31_15500	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
BEN31_15505	COG3584	3D domain protein
BEN31_15505	COG3583	domain protein
BEN31_15510	COG0084	hydrolase, TatD family'
BEN31_15515	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN31_15515	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN31_15520	COG2002	toxin-antitoxin pair type II binding
BEN31_15525	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BEN31_15530	COG2827	Endonuclease containing a URI domain
BEN31_15535	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
BEN31_15540	COG4467	Involved in initiation control of chromosome replication
BEN31_15545	COG1774	PSP1 C-terminal conserved region
BEN31_15550	COG0470	DNA polymerase III
BEN31_15555	COG1728	Protein conserved in bacteria
BEN31_15560	COG3870	Protein conserved in bacteria
BEN31_15565	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BEN31_15570	COG1982	Orn Lys Arg decarboxylase major
BEN31_15575	COG3853	Toxic anion resistance protein (TelA)
BEN31_15580	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
BEN31_15625	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BEN31_15630	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BEN31_15635	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
BEN31_15645	COG0590	tRNA wobble adenosine to inosine editing
BEN31_15650	COG1335	isochorismatase
BEN31_15655	COG1388	LysM domain
BEN31_15655	COG3858	chitin binding
BEN31_15660	COG1428	Deoxynucleoside kinase
BEN31_15665	COG1428	Deoxynucleoside kinase
BEN31_15675	COG0840	transmembrane signaling receptor activity
BEN31_15680	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BEN31_15685	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
BEN31_15690	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
BEN31_15695	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN31_15700	COG1686	Belongs to the peptidase S11 family
BEN31_15705	COG0516	GMP reductase activity
BEN31_15705	COG0517	IMP dehydrogenase activity
BEN31_15740	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
BEN31_15745	COG0187	DNA topoisomerase II activity
BEN31_15755	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
BEN31_15760	COG2501	S4 domain
BEN31_15765	COG0592	DNA-directed DNA polymerase activity
BEN31_15770	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
BEN31_15775	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BEN31_15780	COG0594	ribonuclease P activity
BEN31_15785	COG0706	membrane insertase activity
BEN31_15790	COG1847	R3H domain protein
BEN31_15795	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BEN31_15800	COG0445	tRNA wobble uridine modification
BEN31_15805	COG0357	Ribosomal RNA small subunit methyltransferase G
BEN31_15810	COG1475	DNA binding
BEN31_15820	COG1192	Involved in chromosome partitioning
BEN31_15825	COG1475	DNA binding
BEN31_15835	COG3949	Membrane
BEN31_15850	COG4481	Protein conserved in bacteria
BEN31_15855	COG0012	GTP binding
BEN31_15860	COG0360	Binds together with S18 to 16S ribosomal RNA
BEN31_15865	COG0629	single-stranded DNA binding
BEN31_15870	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BEN31_15875	COG1125	glycine betaine transport
BEN31_15875	COG0517	IMP dehydrogenase activity
BEN31_15880	COG1174	glycine betaine transport
BEN31_15885	COG0346	lactoylglutathione lyase activity
BEN31_15890	COG0400	carboxylic ester hydrolase activity
BEN31_15895	COG0655	NAD(P)H dehydrogenase (quinone) activity
BEN31_15900	COG0753	catalase activity
BEN31_15910	COG1595	DNA-templated transcription, initiation
BEN31_15920	COG1227	inorganic diphosphatase activity
BEN31_15925	COG4241	membrane
BEN31_15930	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
BEN31_15935	COG0359	binds to the 23S rRNA
BEN31_15940	COG2807	transmembrane transport
BEN31_15945	COG3093	addiction module antidote protein HigA
BEN31_15950	COG2819	hydrolase of the alpha beta superfamily
BEN31_15955	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_15960	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BEN31_15960	COG2207	Transcriptional regulator
BEN31_15965	COG3251	PFAM MbtH domain protein
BEN31_15970	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BEN31_15975	COG1535	isochorismatase
BEN31_15975	COG3433	isochorismatase activity
BEN31_15980	COG1021	2,3-dihydroxybenzoate-AMP ligase
BEN31_15985	COG1169	isochorismate synthase
BEN31_15990	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_15995	COG2819	hydrolase of the alpha beta superfamily
BEN31_16010	COG0305	Participates in initiation and elongation during chromosome replication
BEN31_16015	COG0346	lactoylglutathione lyase activity
BEN31_16020	COG2124	cytochrome p450
BEN31_16025	COG1309	transcriptional regulator
BEN31_16030	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BEN31_16035	COG2311	Membrane
BEN31_16045	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN31_16070	COG0745	RESPONSE REGULATOR receiver
BEN31_16075	COG5002	protein histidine kinase activity
BEN31_16080	COG4863	YycH protein
BEN31_16085	COG4853	Protein conserved in bacteria
BEN31_16090	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
BEN31_16095	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN31_16100	COG0456	acetyltransferase
BEN31_16120	COG4720	Psort location CytoplasmicMembrane, score
BEN31_16130	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BEN31_16140	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BEN31_16150	COG1404	Belongs to the peptidase S8 family
BEN31_16170	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BEN31_16175	COG3620	sequence-specific DNA binding
BEN31_16180	COG1131	(ABC) transporter
BEN31_16200	COG2188	Transcriptional regulator
BEN31_16210	COG2723	6-phospho-beta-galactosidase activity
BEN31_16225	COG5444	nuclease activity
BEN31_16240	COG2814	Major facilitator Superfamily
BEN31_16245	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BEN31_16250	COG2814	Major facilitator Superfamily
BEN31_16260	COG1113	amino acid transport
BEN31_16295	COG2190	(PTS) system
BEN31_16295	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_16295	COG1263	PTS System
BEN31_16300	COG2723	6-phospho-beta-galactosidase activity
BEN31_16305	COG3711	transcriptional antiterminator
BEN31_16310	COG0457	Tetratricopeptide repeat
BEN31_16320	COG1136	(ABC) transporter
BEN31_16330	COG2814	Major facilitator Superfamily
BEN31_16335	COG1309	transcriptional regulator
BEN31_16340	COG3835	regulator
BEN31_16345	COG2610	gluconate transmembrane transporter activity
BEN31_16350	COG1929	Belongs to the glycerate kinase type-1 family
BEN31_16355	COG2824	Alkylphosphonate utilization operon protein PhnA
BEN31_16360	COG1131	(ABC) transporter
BEN31_16375	COG2851	Citrate transporter
BEN31_16380	COG1874	Beta-galactosidase
BEN31_16390	COG3833	ABC-type maltose transport systems, permease component
BEN31_16395	COG1175	transmembrane transport
BEN31_16400	COG2182	Extracellular solute-binding protein
BEN31_16405	COG1609	Transcriptional regulator
BEN31_16410	COG0583	DNA-binding transcription factor activity
BEN31_16430	COG1737	Transcriptional regulator
BEN31_16435	COG1070	Carbohydrate kinase
BEN31_16445	COG4335	DNA alkylation repair
BEN31_16450	COG1113	amino acid transport
BEN31_16455	COG0840	transmembrane signaling receptor activity
BEN31_16460	COG0673	inositol 2-dehydrogenase activity
BEN31_16465	COG0789	Transcriptional regulator
BEN31_16470	COG0561	phosphatase activity
BEN31_16490	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
BEN31_16490	COG2755	lipolytic protein G-D-S-L family
BEN31_16500	COG2390	Transcriptional regulator
BEN31_16505	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BEN31_16510	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BEN31_16515	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
BEN31_16520	COG1846	Transcriptional regulator
BEN31_16525	COG0778	Nitroreductase
BEN31_16530	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
BEN31_16535	COG4412	M6 family metalloprotease domain protein
BEN31_16535	COG3291	Pkd domain containing protein
BEN31_16565	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BEN31_16570	COG4721	ABC-type cobalt transport system, permease component
BEN31_16575	COG1122	ATPase activity
BEN31_16580	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
BEN31_16590	COG3878	Protein conserved in bacteria
BEN31_16595	COG3711	transcriptional antiterminator
BEN31_16600	COG1263	PTS System
BEN31_16600	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_16600	COG2190	(PTS) system
BEN31_16605	COG2723	6-phospho-beta-galactosidase activity
BEN31_16610	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BEN31_16625	COG2195	Cleaves the N-terminal amino acid of tripeptides
BEN31_16630	COG4842	Belongs to the WXG100 family
BEN31_16655	COG1396	sequence-specific DNA binding
BEN31_16660	COG0252	asparaginase activity
BEN31_16665	COG1027	Aspartate ammonia-lyase
BEN31_16670	COG1757	Na H antiporter
BEN31_16695	COG3711	transcriptional antiterminator
BEN31_16695	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_16700	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BEN31_16710	COG1312	Catalyzes the dehydration of D-mannonate
BEN31_16715	COG2723	6-phospho-beta-galactosidase activity
BEN31_16720	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BEN31_16725	COG1447	Phosphotransferase system cellobiose-specific component IIA
BEN31_16730	COG0726	polysaccharide deacetylase
BEN31_16735	COG0346	lactoylglutathione lyase activity
BEN31_16740	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN31_16740	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN31_16745	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BEN31_16745	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BEN31_16750	COG2514	catechol 2,3-dioxygenase activity
BEN31_16755	COG1733	regulation of RNA biosynthetic process
BEN31_16760	COG5386	Cell surface protein
BEN31_16765	COG5386	Cell surface protein
BEN31_16790	COG4509	Sortase family
BEN31_16810	COG1271	oxidase subunit
BEN31_16815	COG1294	oxidase, subunit
BEN31_16820	COG4988	ABC transporter
BEN31_16825	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BEN31_16830	COG3866	Pectate lyase
BEN31_16835	COG1595	DNA-templated transcription, initiation
BEN31_16850	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BEN31_16865	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_16865	COG3711	transcriptional antiterminator
BEN31_16870	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BEN31_16875	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BEN31_16880	COG1447	Phosphotransferase system cellobiose-specific component IIA
BEN31_16885	COG1486	melibiose metabolic process
BEN31_16900	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BEN31_16905	COG3420	alginic acid biosynthetic process
BEN31_16915	COG1129	ABC transporter
BEN31_16920	COG1172	Belongs to the binding-protein-dependent transport system permease family
BEN31_16925	COG2357	RelA SpoT domain protein
BEN31_16930	COG0457	Tetratricopeptide repeat
BEN31_16935	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_16940	COG0765	amino acid transport
BEN31_16950	COG0346	lactoylglutathione lyase activity
BEN31_16955	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BEN31_16960	COG1346	cytolysis
BEN31_16965	COG1380	Effector of murein hydrolase LrgA
BEN31_16970	COG0583	DNA-binding transcription factor activity
BEN31_16975	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
BEN31_16980	COG0352	thiamine-phosphate diphosphorylase activity
BEN31_16990	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BEN31_16995	COG3162	membrane
BEN31_17015	COG2246	polysaccharide biosynthetic process
BEN31_17030	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
BEN31_17035	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BEN31_17040	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
BEN31_17050	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BEN31_17055	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BEN31_17060	COG1845	cytochrome c oxidase, subunit III
BEN31_17065	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BEN31_17075	COG0772	Belongs to the SEDS family
BEN31_17080	COG0778	Nitroreductase
BEN31_17085	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BEN31_17095	COG1404	Belongs to the peptidase S8 family
BEN31_17105	COG3711	transcriptional antiterminator
BEN31_17110	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BEN31_17110	COG1263	PTS System
BEN31_17115	COG1621	beta-fructofuranosidase activity
BEN31_17130	COG0351	phosphomethylpyrimidine kinase
BEN31_17140	COG1216	Glycosyl transferase, family 2
BEN31_17145	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BEN31_17150	COG1012	belongs to the aldehyde dehydrogenase family
BEN31_17160	COG2233	PERMEase
BEN31_17165	COG2363	Small membrane protein
BEN31_17185	COG0463	Glycosyl transferase, family 2
BEN31_17190	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BEN31_17195	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BEN31_17200	COG0456	acetyltransferase
BEN31_17205	COG2089	acid synthase
BEN31_17210	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
BEN31_17215	COG3980	spore coat polysaccharide biosynthesis protein
BEN31_17220	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BEN31_17225	COG1088	dTDP-glucose 4,6-dehydratase activity
BEN31_17230	COG1091	dTDP-4-dehydrorhamnose reductase activity
BEN31_17235	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
BEN31_17240	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_17245	COG0436	Aminotransferase
BEN31_17250	COG0151	Belongs to the GarS family
BEN31_17255	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_17260	COG1917	Cupin 2, conserved barrel domain protein
BEN31_17265	COG0077	Prephenate dehydratase
BEN31_17270	COG2814	Major facilitator Superfamily
BEN31_17275	COG1522	sequence-specific DNA binding
BEN31_17280	COG2814	Major facilitator Superfamily
BEN31_17290	COG0280	phosphate acetyltransferase
BEN31_17340	COG4844	belongs to the
BEN31_17345	COG1078	dGTPase activity
BEN31_17350	COG3465	dGTPase activity
BEN31_17360	COG1942	4-Oxalocrotonate Tautomerase
BEN31_17365	COG1994	Peptidase M50
BEN31_17375	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BEN31_17380	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
BEN31_17385	COG0010	Belongs to the arginase family
BEN31_17395	COG4506	Protein conserved in bacteria
BEN31_17400	COG0018	arginyl-trna synthetase
BEN31_17405	COG1619	proteins homologs of microcin C7 resistance protein MccF
BEN31_17410	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN31_17415	COG1132	(ABC) transporter
BEN31_17420	COG1619	proteins homologs of microcin C7 resistance protein MccF
BEN31_17430	COG4294	response to UV
BEN31_17435	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN31_17440	COG0247	lactate metabolic process
BEN31_17440	COG2181	nitrate reductase activity
BEN31_17445	COG0183	Belongs to the thiolase family
BEN31_17450	COG1250	3-hydroxyacyl-CoA dehydrogenase
BEN31_17455	COG1960	acyl-CoA dehydrogenase activity
BEN31_17460	COG1960	acyl-CoA dehydrogenase activity
BEN31_17470	COG3343	RNA polymerase activity
BEN31_17475	COG0504	CTP synthase activity
BEN31_17480	COG4821	SIS domain
BEN31_17485	COG2204	response regulator
BEN31_17490	COG0191	fructose-bisphosphate aldolase activity
BEN31_17495	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BEN31_17500	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BEN31_17505	COG1494	fructose-1,6-bisphosphatase
BEN31_17510	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
BEN31_17515	COG0254	rRNA binding
BEN31_17520	COG1435	thymidine kinase activity
BEN31_17525	COG0281	malic enzyme
BEN31_17530	COG0679	Auxin Efflux Carrier
BEN31_17535	COG0789	Transcriptional regulator
BEN31_17540	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BEN31_17545	COG2890	protein-(glutamine-N5) methyltransferase activity
BEN31_17560	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BEN31_17565	COG0009	L-threonylcarbamoyladenylate synthase
BEN31_17570	COG1971	Probably functions as a manganese efflux pump
BEN31_17575	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BEN31_17580	COG0698	ribose 5-phosphate isomerase
BEN31_17585	COG4475	Protein of unknown function (DUF436)
BEN31_17590	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BEN31_17595	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BEN31_17605	COG0356	it plays a direct role in the translocation of protons across the membrane
BEN31_17610	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BEN31_17615	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BEN31_17620	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BEN31_17625	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BEN31_17630	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BEN31_17635	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BEN31_17640	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BEN31_17650	COG4836	Membrane
BEN31_17660	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
BEN31_17665	COG2385	sporulation resulting in formation of a cellular spore
BEN31_17670	COG2304	oxidoreductase activity
BEN31_17675	COG2304	oxidoreductase activity
BEN31_17680	COG0243	molybdopterin cofactor binding
BEN31_17690	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BEN31_17695	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BEN31_17700	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BEN31_17705	COG0523	cobalamin synthesis protein
BEN31_17745	COG1247	-acetyltransferase
BEN31_17750	COG0739	heme binding
BEN31_17755	COG0347	Belongs to the P(II) protein family
BEN31_17760	COG0004	ammonium transporteR
BEN31_17765	COG1126	abc transporter atp-binding protein
BEN31_17770	COG0765	amino acid transport
BEN31_17775	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN31_17780	COG0477	Major facilitator Superfamily
BEN31_17785	COG0671	phosphoesterase, PA-phosphatase related
BEN31_17790	COG2814	Major facilitator Superfamily
BEN31_17795	COG1846	Transcriptional regulator
BEN31_17800	COG1609	Transcriptional regulator
BEN31_17805	COG1077	Cell shape determining protein MreB Mrl
BEN31_17810	COG4786	Flagellar basal body rod
BEN31_17815	COG4786	Flagellar basal body rod
BEN31_17820	COG0457	Tetratricopeptide repeat
BEN31_17825	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BEN31_17830	COG1970	mechanosensitive ion channel activity
BEN31_17845	COG0561	phosphatase activity
BEN31_17850	COG2202	Pas domain
BEN31_17850	COG1366	Belongs to the anti-sigma-factor antagonist family
BEN31_17855	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BEN31_17860	COG4715	Zinc finger, swim domain protein
BEN31_17865	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BEN31_17870	COG2059	Chromate
BEN31_17875	COG2059	Chromate
BEN31_17880	COG1522	sequence-specific DNA binding
BEN31_17885	COG3527	Alpha-acetolactate decarboxylase
BEN31_17890	COG0028	Belongs to the TPP enzyme family
BEN31_17895	COG0583	DNA-binding transcription factor activity
BEN31_17900	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BEN31_17905	COG1879	ABC-type sugar transport system periplasmic component
BEN31_17910	COG1172	Belongs to the binding-protein-dependent transport system permease family
BEN31_17915	COG1129	ABC transporter
BEN31_17920	COG1869	D-ribose catabolic process
BEN31_17925	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BEN31_17930	COG1609	Transcriptional regulator
BEN31_17945	COG0697	spore germination
BEN31_17950	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
BEN31_17960	COG2843	Capsule synthesis protein
BEN31_17965	COG0791	NLP P60 protein
BEN31_17970	COG0561	phosphatase activity
BEN31_17975	COG1316	TRANSCRIPTIONal
BEN31_17980	COG2814	Major facilitator Superfamily
BEN31_17995	COG0814	amino acid
BEN31_18000	COG0697	spore germination
BEN31_18005	COG1028	Short-chain dehydrogenase reductase Sdr
BEN31_18010	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
BEN31_18015	COG1609	Transcriptional regulator
BEN31_18020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BEN31_18025	COG0800	Aldolase
BEN31_18030	COG0454	-acetyltransferase
BEN31_18040	COG2972	Histidine kinase
BEN31_18045	COG2197	response regulator
BEN31_18050	COG1653	transport
BEN31_18055	COG1175	transmembrane transport
BEN31_18065	COG1482	cell wall glycoprotein biosynthetic process
BEN31_18070	COG4193	domain, Protein
BEN31_18075	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BEN31_18080	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
BEN31_18085	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
BEN31_18090	COG0438	transferase activity, transferring glycosyl groups
BEN31_18095	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BEN31_18100	COG1215	transferase activity, transferring glycosyl groups
BEN31_18100	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
BEN31_18105	COG1682	transport, permease protein
BEN31_18110	COG1134	teichoic acid transport
BEN31_18120	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BEN31_18125	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BEN31_18160	COG1316	TRANSCRIPTIONal
BEN31_18170	COG2385	sporulation resulting in formation of a cellular spore
BEN31_18170	COG2247	cell wall binding repeat
BEN31_18175	COG2247	cell wall binding repeat
BEN31_18175	COG0860	N-Acetylmuramoyl-L-alanine amidase
BEN31_18190	COG2244	polysaccharide biosynthetic process
BEN31_18195	COG0438	transferase activity, transferring glycosyl groups
BEN31_18195	COG0297	glycogen (starch) synthase activity
BEN31_18200	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BEN31_18205	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BEN31_18210	COG3307	-O-antigen
BEN31_18215	COG3206	protein involved in exopolysaccharide biosynthesis
BEN31_18220	COG1215	transferase activity, transferring glycosyl groups
BEN31_18225	COG0438	transferase activity, transferring glycosyl groups
BEN31_18230	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BEN31_18235	COG1316	TRANSCRIPTIONal
BEN31_18240	COG1739	Uncharacterized protein family UPF0029
BEN31_18245	COG4585	Histidine kinase
BEN31_18250	COG2197	response regulator
BEN31_18255	COG1307	EDD domain protein, DegV family
BEN31_18260	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
BEN31_18270	COG1040	competence protein
BEN31_18285	COG3418	PFAM FlgN family protein
BEN31_18290	COG4786	Flagellar basal body rod
BEN31_18290	COG1256	bacterial-type flagellum assembly
BEN31_18295	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BEN31_18305	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
BEN31_18310	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BEN31_18315	COG1334	flagellar protein FlaG
BEN31_18320	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BEN31_18325	COG1516	flagellar protein fliS
BEN31_18340	COG0840	transmembrane signaling receptor activity
BEN31_18345	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BEN31_18350	COG0653	protein targeting
BEN31_18355	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BEN31_18370	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BEN31_18375	COG2010	Cytochrome c
BEN31_18380	COG2884	Cell division ATP-binding protein ftsE
BEN31_18385	COG2177	Part of the ABC transporter FtsEX involved in
BEN31_18390	COG0791	NLP P60 protein
BEN31_18390	COG3883	PFAM NLP P60 protein
BEN31_18395	COG0730	response to heat
BEN31_18400	COG0793	Belongs to the peptidase S41A family
BEN31_18400	COG3409	Peptidoglycan-binding domain 1 protein
BEN31_18410	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN31_18415	COG1733	regulation of RNA biosynthetic process
BEN31_18420	COG0778	Nitroreductase
BEN31_18425	COG1113	amino acid transport
BEN31_18430	COG5002	protein histidine kinase activity
BEN31_18435	COG0745	RESPONSE REGULATOR receiver
BEN31_18445	COG2814	Major facilitator Superfamily
BEN31_18450	COG1309	transcriptional regulator
BEN31_18455	COG0574	Belongs to the PEP-utilizing enzyme family
BEN31_18455	COG3848	Pyruvate phosphate dikinase
BEN31_18465	COG4897	Protein conserved in bacteria
BEN31_18475	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BEN31_18490	COG3595	metallopeptidase activity
BEN31_18495	COG1983	PspC domain protein
BEN31_18500	COG1950	PFAM Membrane protein of
BEN31_18505	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BEN31_18515	COG0363	glucosamine-6-phosphate deaminase activity
BEN31_18520	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BEN31_18525	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
BEN31_18535	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
BEN31_18540	COG0546	phosphoglycolate phosphatase activity
BEN31_18545	COG0110	maltose O-acetyltransferase activity
BEN31_18550	COG1959	2 iron, 2 sulfur cluster binding
BEN31_18555	COG2910	NAD(P)H-binding
BEN31_18560	COG4990	cell redox homeostasis
BEN31_18565	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
BEN31_18570	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BEN31_18575	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BEN31_18580	COG0131	Imidazoleglycerol-phosphate dehydratase
BEN31_18585	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BEN31_18590	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BEN31_18595	COG0107	imidazoleglycerol-phosphate synthase activity
BEN31_18600	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BEN31_18600	COG0140	phosphoribosyl-ATP diphosphatase activity
BEN31_18605	COG0457	Tetratricopeptide repeat
BEN31_18610	COG3883	PFAM NLP P60 protein
BEN31_18610	COG0791	NLP P60 protein
BEN31_18615	COG0492	ferredoxin-NADP+ reductase activity
BEN31_18620	COG1051	belongs to the nudix hydrolase family
BEN31_18625	COG1660	Displays ATPase and GTPase activities
BEN31_18630	COG0391	Required for morphogenesis under gluconeogenic growth conditions
BEN31_18635	COG1481	regulation of sporulation
BEN31_18640	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN31_18645	COG2162	N-hydroxyarylamine O-acetyltransferase activity
BEN31_18655	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BEN31_18660	COG0288	reversible hydration of carbon dioxide
BEN31_18665	COG0659	secondary active sulfate transmembrane transporter activity
BEN31_18670	COG1694	Mazg nucleotide pyrophosphohydrolase
BEN31_18675	COG1611	Belongs to the LOG family
BEN31_18680	COG0740	serine-type endopeptidase activity
BEN31_18690	COG4974	Belongs to the 'phage' integrase family
BEN31_18755	COG0457	Tetratricopeptide repeat
BEN31_18760	COG0457	Tetratricopeptide repeat
BEN31_18785	COG0457	Tetratricopeptide repeat