BEN31_00055 SM00474 3'-5' exonuclease BEN31_00055 SM00479 BEN31_00055 BEN31_00055 SM00482 DNA polymerase A domain BEN31_00060 SM00479 BEN31_00060 BEN31_00315 SM00047 Lysozyme subfamily 2 BEN31_00325 SM00710 Parallel beta-helix repeats BEN31_00345 SM00644 BEN31_00345 BEN31_00370 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00405 SM00382 ATPases associated with a variety of cellular activities BEN31_00410 SM00382 ATPases associated with a variety of cellular activities BEN31_00415 SM00382 ATPases associated with a variety of cellular activities BEN31_00445 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00530 SM00382 ATPases associated with a variety of cellular activities BEN31_00535 SM00382 ATPases associated with a variety of cellular activities BEN31_00555 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_00555 SM00895 BEN31_00555 BEN31_00560 SM00382 ATPases associated with a variety of cellular activities BEN31_00580 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEN31_00600 SM01192 BEN31_00600 BEN31_00600 SM01193 BEN31_00600 BEN31_00610 SM00382 ATPases associated with a variety of cellular activities BEN31_00650 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_00650 SM00382 ATPases associated with a variety of cellular activities BEN31_00675 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00680 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00685 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00690 SM00966 SpoVT / AbrB like domain BEN31_00705 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_00705 SM00357 Cold shock protein domain BEN31_00705 SM00955 BEN31_00705 BEN31_00730 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00735 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00740 SM00530 Helix-turn-helix XRE-family like proteins BEN31_00760 SM00382 ATPases associated with a variety of cellular activities BEN31_00820 SM00507 HNH nucleases BEN31_00915 SM00047 Lysozyme subfamily 2 BEN31_00920 SM00710 Parallel beta-helix repeats BEN31_00945 SM00646 BEN31_00945 BEN31_00985 SM00267 diguanylate cyclase BEN31_01020 SM00387 Histidine kinase-like ATPases BEN31_01025 SM00448 cheY-homologous receiver domain BEN31_01050 SM00382 ATPases associated with a variety of cellular activities BEN31_01115 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_01145 SM00382 ATPases associated with a variety of cellular activities BEN31_01150 SM00448 cheY-homologous receiver domain BEN31_01150 SM00862 Transcriptional regulatory protein, C terminal BEN31_01155 SM00387 Histidine kinase-like ATPases BEN31_01155 SM00388 His Kinase A (phosphoacceptor) domain BEN31_01165 SM00354 helix_turn _helix lactose operon repressor BEN31_01175 SM00858 BEN31_01175 BEN31_01180 SM00710 Parallel beta-helix repeats BEN31_01195 SM00382 ATPases associated with a variety of cellular activities BEN31_01225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_01225 SM00387 Histidine kinase-like ATPases BEN31_01230 SM00421 helix_turn_helix, Lux Regulon BEN31_01230 SM00448 cheY-homologous receiver domain BEN31_01265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_01265 SM00387 Histidine kinase-like ATPases BEN31_01265 SM00388 His Kinase A (phosphoacceptor) domain BEN31_01270 SM00448 cheY-homologous receiver domain BEN31_01270 SM00862 Transcriptional regulatory protein, C terminal BEN31_01275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_01290 SM00382 ATPases associated with a variety of cellular activities BEN31_01340 SM00493 BEN31_01340 BEN31_01355 SM00382 ATPases associated with a variety of cellular activities BEN31_01355 SM00930 BEN31_01355 BEN31_01375 SM00382 ATPases associated with a variety of cellular activities BEN31_01415 SM00448 cheY-homologous receiver domain BEN31_01415 SM00862 Transcriptional regulatory protein, C terminal BEN31_01420 SM00388 His Kinase A (phosphoacceptor) domain BEN31_01500 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_01600 SM00422 helix_turn_helix, mercury resistance BEN31_01655 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BEN31_01655 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BEN31_01700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_01750 SM00052 Putative diguanylate phosphodiesterase BEN31_01770 SM00387 Histidine kinase-like ATPases BEN31_01775 SM00421 helix_turn_helix, Lux Regulon BEN31_01775 SM00448 cheY-homologous receiver domain BEN31_01840 SM00382 ATPases associated with a variety of cellular activities BEN31_01850 SM00448 cheY-homologous receiver domain BEN31_01855 SM00387 Histidine kinase-like ATPases BEN31_01880 SM00479 BEN31_01880 BEN31_01885 SM01298 BEN31_01885 BEN31_01895 SM00387 Histidine kinase-like ATPases BEN31_01895 SM00388 His Kinase A (phosphoacceptor) domain BEN31_01915 SM00344 helix_turn_helix ASNC type BEN31_01925 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_01975 SM01091 Transporter associated domain BEN31_02000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_02000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_02000 SM00319 Homologues of the ligand binding domain of Tar BEN31_02005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_02005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_02005 SM00319 Homologues of the ligand binding domain of Tar BEN31_02010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_02010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_02015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_02015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_02015 SM00319 Homologues of the ligand binding domain of Tar BEN31_02055 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_02055 SM00876 Biotin and Thiamin Synthesis associated domain BEN31_02065 SM00530 Helix-turn-helix XRE-family like proteins BEN31_02070 SM00530 Helix-turn-helix XRE-family like proteins BEN31_02090 SM00421 helix_turn_helix, Lux Regulon BEN31_02165 SM00257 Lysin motif BEN31_02225 SM00644 BEN31_02225 BEN31_02265 SM00244 prohibitin homologues BEN31_02280 SM00530 Helix-turn-helix XRE-family like proteins BEN31_02455 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BEN31_02495 SM00947 Carbonic anhydrase BEN31_02500 SM01234 BEN31_02500 BEN31_02560 SM00382 ATPases associated with a variety of cellular activities BEN31_02625 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_02640 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_02645 SM00382 ATPases associated with a variety of cellular activities BEN31_02655 SM00382 ATPases associated with a variety of cellular activities BEN31_02670 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEN31_02670 SM00091 PAS domain BEN31_02720 SM00342 helix_turn_helix, arabinose operon control protein BEN31_02750 SM00450 Rhodanese Homology Domain BEN31_02785 SM00363 S4 RNA-binding domain BEN31_02790 SM00420 helix_turn_helix, Deoxyribose operon repressor BEN31_02845 SM00849 Metallo-beta-lactamase superfamily BEN31_02850 SM00919 Malic enzyme, NAD binding domain BEN31_02850 SM01274 BEN31_02850 BEN31_02890 SM00382 ATPases associated with a variety of cellular activities BEN31_02890 SM00843 BEN31_02890 BEN31_02915 SM00830 Chorismate mutase type II BEN31_02920 SM00354 helix_turn _helix lactose operon repressor BEN31_02930 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_02945 SM00363 S4 RNA-binding domain BEN31_02975 SM00363 S4 RNA-binding domain BEN31_02975 SM01390 BEN31_02975 BEN31_02980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEN31_03015 SM00981 BEN31_03015 BEN31_03035 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_03055 SM00382 ATPases associated with a variety of cellular activities BEN31_03070 SM00387 Histidine kinase-like ATPases BEN31_03075 SM00448 cheY-homologous receiver domain BEN31_03075 SM00862 Transcriptional regulatory protein, C terminal BEN31_03085 SM00421 helix_turn_helix, Lux Regulon BEN31_03085 SM00448 cheY-homologous receiver domain BEN31_03100 SM00487 DEAD-like helicases superfamily BEN31_03100 SM00490 helicase superfamily c-terminal domain BEN31_03145 SM00852 Probable molybdopterin binding domain BEN31_03165 SM00849 Metallo-beta-lactamase superfamily BEN31_03170 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_03200 SM00481 DNA polymerase alpha chain like domain BEN31_03205 SM00919 Malic enzyme, NAD binding domain BEN31_03205 SM01274 BEN31_03205 BEN31_03250 SM01329 BEN31_03250 BEN31_03260 SM00448 cheY-homologous receiver domain BEN31_03260 SM00862 Transcriptional regulatory protein, C terminal BEN31_03265 SM00387 Histidine kinase-like ATPases BEN31_03265 SM00388 His Kinase A (phosphoacceptor) domain BEN31_03270 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BEN31_03270 SM00474 3'-5' exonuclease BEN31_03270 SM00475 5'-3' exonuclease BEN31_03270 SM00482 DNA polymerase A domain BEN31_03275 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BEN31_03275 SM01232 BEN31_03275 BEN31_03290 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEN31_03315 SM00382 ATPases associated with a variety of cellular activities BEN31_03330 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEN31_03335 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEN31_03335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_03345 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEN31_03350 SM00448 cheY-homologous receiver domain BEN31_03350 SM00850 LytTr DNA-binding domain BEN31_03405 SM00967 RNA 2'-O ribose methyltransferase substrate binding BEN31_03415 SM00873 B3/4 domain BEN31_03415 SM00874 tRNA synthetase B5 domain BEN31_03415 SM00896 Ferredoxin-fold anticodon binding domain BEN31_03435 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEN31_03435 SM00481 DNA polymerase alpha chain like domain BEN31_03435 SM00483 DNA polymerase X family BEN31_03440 SM00463 Small MutS-related domain BEN31_03440 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BEN31_03440 SM00534 ATPase domain of DNA mismatch repair MUTS family BEN31_03470 SM00893 Electron transfer flavoprotein domain BEN31_03475 SM00893 Electron transfer flavoprotein domain BEN31_03480 SM00813 Alpha-L-arabinofuranosidase C-terminus BEN31_03490 SM00465 GIY-YIG type nucleases (URI domain) BEN31_03545 SM00421 helix_turn_helix, Lux Regulon BEN31_03550 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_03560 SM00909 Sporulation and spore germination BEN31_03595 SM00612 BEN31_03595 BEN31_03650 SM00917 LeuA allosteric (dimerisation) domain BEN31_03655 SM01329 BEN31_03655 BEN31_03680 SM00382 ATPases associated with a variety of cellular activities BEN31_03680 SM00994 ClpX C4-type zinc finger BEN31_03680 SM01086 C-terminal, D2-small domain, of ClpB protein BEN31_03685 SM00382 ATPases associated with a variety of cellular activities BEN31_03690 SM00382 ATPases associated with a variety of cellular activities BEN31_03690 SM00464 Found in ATP-dependent protease La (LON) BEN31_03725 SM01004 Delta-aminolevulinic acid dehydratase BEN31_03735 SM00257 Lysin motif BEN31_03830 SM01317 BEN31_03830 BEN31_03875 SM00257 Lysin motif BEN31_03905 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEN31_03910 SM00382 ATPases associated with a variety of cellular activities BEN31_03930 SM01323 BEN31_03930 BEN31_03980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_03980 SM00954 Region found in RelA / SpoT proteins BEN31_03990 SM00287 Bacterial SH3 domain homologues BEN31_03990 SM00646 BEN31_03990 BEN31_04015 SM00382 ATPases associated with a variety of cellular activities BEN31_04035 SM00028 Tetratricopeptide repeats BEN31_04070 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_04070 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEN31_04075 SM00382 ATPases associated with a variety of cellular activities BEN31_04085 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEN31_04095 SM00732 Likely ribonuclease with RNase H fold. BEN31_04220 SM00829 Enoylreductase BEN31_04240 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_04245 SM00382 ATPases associated with a variety of cellular activities BEN31_04290 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BEN31_04305 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_04315 SM01007 Class II Aldolase and Adducin N-terminal domain BEN31_04340 SM00382 ATPases associated with a variety of cellular activities BEN31_04390 SM00825 Beta-ketoacyl synthase BEN31_04395 SM00530 Helix-turn-helix XRE-family like proteins BEN31_04420 SM00822 BEN31_04420 BEN31_04425 SM00829 Enoylreductase BEN31_04470 SM01103 BEN31_04470 BEN31_04480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_04500 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEN31_04510 SM00849 Metallo-beta-lactamase superfamily BEN31_04545 SM00838 Elongation factor G C-terminus BEN31_04550 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_04570 SM00271 DnaJ molecular chaperone homology domain BEN31_04585 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_04635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_04680 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_04695 SM00400 zinc finger BEN31_04695 SM00493 BEN31_04695 BEN31_04730 SM00487 DEAD-like helicases superfamily BEN31_04730 SM00490 helicase superfamily c-terminal domain BEN31_04735 SM00518 AP endonuclease family 2 BEN31_04750 SM00382 ATPases associated with a variety of cellular activities BEN31_04835 SM00382 ATPases associated with a variety of cellular activities BEN31_04840 SM00382 ATPases associated with a variety of cellular activities BEN31_04865 SM00028 Tetratricopeptide repeats BEN31_04885 SM00631 BEN31_04885 BEN31_04905 SM00849 Metallo-beta-lactamase superfamily BEN31_04935 SM00382 ATPases associated with a variety of cellular activities BEN31_04995 SM00530 Helix-turn-helix XRE-family like proteins BEN31_05005 SM00487 DEAD-like helicases superfamily BEN31_05005 SM00490 helicase superfamily c-terminal domain BEN31_05025 SM00450 Rhodanese Homology Domain BEN31_05035 SM00529 Helix-turn-helix diphteria tox regulatory element BEN31_05070 SM00841 Elongation factor P, C-terminal BEN31_05070 SM01185 BEN31_05070 BEN31_05080 SM00382 ATPases associated with a variety of cellular activities BEN31_05125 SM00878 Biotin carboxylase C-terminal domain BEN31_05160 SM00861 Transketolase, pyrimidine binding domain BEN31_05165 SM00363 S4 RNA-binding domain BEN31_05180 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_05185 SM00448 cheY-homologous receiver domain BEN31_05210 SM00091 PAS domain BEN31_05210 SM00382 ATPases associated with a variety of cellular activities BEN31_05220 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEN31_05240 SM00861 Transketolase, pyrimidine binding domain BEN31_05255 SM00046 Diacylglycerol kinase catalytic domain (presumed) BEN31_05265 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_05265 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEN31_05275 SM00382 ATPases associated with a variety of cellular activities BEN31_05305 SM00260 Two component signalling adaptor domain BEN31_05325 SM01350 BEN31_05325 BEN31_05360 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_05360 SM00866 BEN31_05360 BEN31_05405 SM00849 Metallo-beta-lactamase superfamily BEN31_05470 SM00028 Tetratricopeptide repeats BEN31_05550 SM00936 Penicillin-binding protein 5, C-terminal domain BEN31_05560 SM00387 Histidine kinase-like ATPases BEN31_05695 SM00363 S4 RNA-binding domain BEN31_05715 SM00448 cheY-homologous receiver domain BEN31_05715 SM00862 Transcriptional regulatory protein, C terminal BEN31_05720 SM00091 PAS domain BEN31_05720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_05720 SM00387 Histidine kinase-like ATPases BEN31_05720 SM00388 His Kinase A (phosphoacceptor) domain BEN31_05735 SM00257 Lysin motif BEN31_05760 SM00487 DEAD-like helicases superfamily BEN31_05760 SM00490 helicase superfamily c-terminal domain BEN31_05770 SM00257 Lysin motif BEN31_05790 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEN31_05830 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_05835 SM01240 BEN31_05835 BEN31_05885 SM00411 bacterial (prokaryotic) histone like domain BEN31_05915 SM00562 BEN31_05915 BEN31_05920 SM00138 Methyltransferase, chemotaxis proteins BEN31_05985 SM00028 Tetratricopeptide repeats BEN31_05990 SM00914 BEN31_05990 BEN31_06040 SM00851 MGS-like domain BEN31_06080 SM00479 BEN31_06080 BEN31_06080 SM00491 BEN31_06080 BEN31_06105 SM00478 endonuclease III BEN31_06105 SM00525 BEN31_06105 BEN31_06165 SM00487 DEAD-like helicases superfamily BEN31_06165 SM00490 helicase superfamily c-terminal domain BEN31_06190 SM00981 BEN31_06190 BEN31_06200 SM00491 BEN31_06200 BEN31_06240 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BEN31_06240 SM00475 5'-3' exonuclease BEN31_06275 SM00357 Cold shock protein domain BEN31_06305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_06310 SM00567 E-Z type HEAT repeats BEN31_06310 SM00932 Scaffold protein Nfu/NifU N terminal BEN31_06360 SM00382 ATPases associated with a variety of cellular activities BEN31_06410 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_06455 SM00091 PAS domain BEN31_06455 SM00382 ATPases associated with a variety of cellular activities BEN31_06485 SM00014 Acid phosphatase homologues BEN31_06515 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_06515 SM00245 tail specific protease BEN31_06580 SM00257 Lysin motif BEN31_06590 SM00382 ATPases associated with a variety of cellular activities BEN31_06595 SM00327 von Willebrand factor (vWF) type A domain BEN31_06600 SM00861 Transketolase, pyrimidine binding domain BEN31_06655 SM00341 Helicase and RNase D C-terminal BEN31_06655 SM00487 DEAD-like helicases superfamily BEN31_06655 SM00490 helicase superfamily c-terminal domain BEN31_06655 SM00956 BEN31_06655 BEN31_06660 SM00257 Lysin motif BEN31_06700 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEN31_06715 SM00871 Bacterial transcription activator, effector binding domain BEN31_06775 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEN31_06790 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BEN31_06805 SM00422 helix_turn_helix, mercury resistance BEN31_06810 SM00382 ATPases associated with a variety of cellular activities BEN31_06815 SM00382 ATPases associated with a variety of cellular activities BEN31_06845 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEN31_06970 SM00420 helix_turn_helix, Deoxyribose operon repressor BEN31_06970 SM01134 BEN31_06970 BEN31_06995 SM00878 Biotin carboxylase C-terminal domain BEN31_07050 SM00100 Cyclic nucleotide-monophosphate binding domain BEN31_07060 SM00155 Phospholipase D. Active site motifs. BEN31_07095 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_07135 SM00354 helix_turn _helix lactose operon repressor BEN31_07165 SM00606 Cellulose Binding Domain Type IV BEN31_07175 SM00448 cheY-homologous receiver domain BEN31_07175 SM00862 Transcriptional regulatory protein, C terminal BEN31_07180 SM00387 Histidine kinase-like ATPases BEN31_07180 SM00388 His Kinase A (phosphoacceptor) domain BEN31_07245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEN31_07255 SM00226 Low molecular weight phosphatase family BEN31_07305 SM01329 BEN31_07305 BEN31_07320 SM00434 DNA Topoisomerase IV BEN31_07325 SM00387 Histidine kinase-like ATPases BEN31_07325 SM00433 TopoisomeraseII BEN31_07335 SM00881 CoA binding domain BEN31_07340 SM01207 BEN31_07340 BEN31_07430 SM00861 Transketolase, pyrimidine binding domain BEN31_07440 SM00857 Resolvase, N terminal domain BEN31_07445 SM00257 Lysin motif BEN31_07475 SM00020 Trypsin-like serine protease BEN31_07540 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BEN31_07560 SM00028 Tetratricopeptide repeats BEN31_07575 SM00014 Acid phosphatase homologues BEN31_07585 SM00506 Appr-1"-p processing enzyme BEN31_07605 SM01230 BEN31_07605 BEN31_07610 SM00422 helix_turn_helix, mercury resistance BEN31_07625 SM00382 ATPases associated with a variety of cellular activities BEN31_07630 SM00646 BEN31_07630 BEN31_07715 SM00028 Tetratricopeptide repeats BEN31_07725 SM01058 CarD-like/TRCF domain BEN31_07745 SM00853 MutL C terminal dimerisation domain BEN31_07745 SM01340 BEN31_07745 BEN31_07750 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BEN31_07750 SM00534 ATPase domain of DNA mismatch repair MUTS family BEN31_07765 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_07775 SM00829 Enoylreductase BEN31_07795 SM00322 K homology RNA-binding domain BEN31_07795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_07800 SM00382 ATPases associated with a variety of cellular activities BEN31_07805 SM00852 Probable molybdopterin binding domain BEN31_07815 SM00530 Helix-turn-helix XRE-family like proteins BEN31_07840 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_07865 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_07865 SM00866 BEN31_07865 BEN31_07870 SM00382 ATPases associated with a variety of cellular activities BEN31_07870 SM00843 BEN31_07870 BEN31_07885 SM00849 Metallo-beta-lactamase superfamily BEN31_07890 SM01130 BEN31_07890 BEN31_07900 SM00859 Semialdehyde dehydrogenase, NAD binding domain BEN31_07935 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_07935 SM00322 K homology RNA-binding domain BEN31_07940 SM01387 BEN31_07940 BEN31_07945 SM00904 Riboflavin kinase BEN31_07980 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_07980 SM00322 K homology RNA-binding domain BEN31_07995 SM00633 Glycosyl hydrolase family 10 BEN31_08005 SM01067 Cellulose binding domain BEN31_08010 SM00479 BEN31_08010 BEN31_08010 SM00481 DNA polymerase alpha chain like domain BEN31_08020 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_08080 SM00260 Two component signalling adaptor domain BEN31_08085 SM00073 Histidine Phosphotransfer domain BEN31_08085 SM00260 Two component signalling adaptor domain BEN31_08085 SM00387 Histidine kinase-like ATPases BEN31_08085 SM01231 BEN31_08085 BEN31_08090 SM00448 cheY-homologous receiver domain BEN31_08100 SM00962 SRP54-type protein, GTPase domain BEN31_08135 SM00448 cheY-homologous receiver domain BEN31_08185 SM00382 ATPases associated with a variety of cellular activities BEN31_08225 SM00382 ATPases associated with a variety of cellular activities BEN31_08225 SM01086 C-terminal, D2-small domain, of ClpB protein BEN31_08245 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BEN31_08245 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BEN31_08245 SM00493 BEN31_08245 BEN31_08255 SM00881 CoA binding domain BEN31_08315 SM00382 ATPases associated with a variety of cellular activities BEN31_08315 SM00962 SRP54-type protein, GTPase domain BEN31_08315 SM00963 SRP54-type protein, helical bundle domain BEN31_08325 SM00382 ATPases associated with a variety of cellular activities BEN31_08325 SM00962 SRP54-type protein, GTPase domain BEN31_08325 SM00963 SRP54-type protein, helical bundle domain BEN31_08330 SM00968 SMC proteins Flexible Hinge Domain BEN31_08335 SM00358 Double-stranded RNA binding motif BEN31_08335 SM00535 Ribonuclease III family BEN31_08345 SM00822 BEN31_08345 BEN31_08350 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEN31_08365 SM00487 DEAD-like helicases superfamily BEN31_08365 SM00490 helicase superfamily c-terminal domain BEN31_08380 SM01120 BEN31_08380 BEN31_08380 SM01121 BEN31_08380 BEN31_08400 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BEN31_08415 SM00220 Serine/Threonine protein kinases, catalytic domain BEN31_08415 SM00740 BEN31_08415 BEN31_08420 SM00331 Sigma factor PP2C-like phosphatases BEN31_08420 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEN31_08445 SM00487 DEAD-like helicases superfamily BEN31_08445 SM00490 helicase superfamily c-terminal domain BEN31_08455 SM01409 BEN31_08455 BEN31_08460 SM00072 Guanylate kinase homologues. BEN31_08475 SM00831 Cation transporter/ATPase, N-terminus BEN31_08525 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BEN31_08540 SM00851 MGS-like domain BEN31_08540 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEN31_08540 SM01209 BEN31_08540 BEN31_08545 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BEN31_08570 SM00363 S4 RNA-binding domain BEN31_08595 SM00363 S4 RNA-binding domain BEN31_08625 SM00382 ATPases associated with a variety of cellular activities BEN31_08650 SM00858 BEN31_08650 BEN31_08680 SM00864 Tubulin/FtsZ family, GTPase domain BEN31_08680 SM00865 Tubulin/FtsZ family, C-terminal domain BEN31_08685 SM00842 Cell division protein FtsA BEN31_08740 SM00740 BEN31_08740 BEN31_08745 SM00740 BEN31_08745 BEN31_08780 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BEN31_08800 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_08855 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_08905 SM00878 Biotin carboxylase C-terminal domain BEN31_08930 SM00670 Large family of predicted nucleotide-binding domains BEN31_08950 SM00838 Elongation factor G C-terminus BEN31_09010 SM00861 Transketolase, pyrimidine binding domain BEN31_09045 SM00849 Metallo-beta-lactamase superfamily BEN31_09065 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEN31_09065 SM00091 PAS domain BEN31_09065 SM00387 Histidine kinase-like ATPases BEN31_09065 SM00388 His Kinase A (phosphoacceptor) domain BEN31_09070 SM00966 SpoVT / AbrB like domain BEN31_09085 SM00382 ATPases associated with a variety of cellular activities BEN31_09110 SM00420 helix_turn_helix, Deoxyribose operon repressor BEN31_09110 SM01134 BEN31_09110 BEN31_09120 SM00382 ATPases associated with a variety of cellular activities BEN31_09155 SM00852 Probable molybdopterin binding domain BEN31_09260 SM00052 Putative diguanylate phosphodiesterase BEN31_09275 SM00257 Lysin motif BEN31_09295 SM00260 Two component signalling adaptor domain BEN31_09295 SM00448 cheY-homologous receiver domain BEN31_09320 SM00091 PAS domain BEN31_09320 SM00387 Histidine kinase-like ATPases BEN31_09320 SM00388 His Kinase A (phosphoacceptor) domain BEN31_09345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_09345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_09375 SM01061 CAT RNA binding domain BEN31_09380 SM00354 helix_turn _helix lactose operon repressor BEN31_09450 SM00382 ATPases associated with a variety of cellular activities BEN31_09450 SM01086 C-terminal, D2-small domain, of ClpB protein BEN31_09465 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_09470 SM00387 Histidine kinase-like ATPases BEN31_09470 SM00388 His Kinase A (phosphoacceptor) domain BEN31_09485 SM01007 Class II Aldolase and Adducin N-terminal domain BEN31_09520 SM00091 PAS domain BEN31_09520 SM00387 Histidine kinase-like ATPases BEN31_09520 SM00388 His Kinase A (phosphoacceptor) domain BEN31_09580 SM00052 Putative diguanylate phosphodiesterase BEN31_09580 SM00267 diguanylate cyclase BEN31_09585 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_09600 SM00422 helix_turn_helix, mercury resistance BEN31_09620 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_09620 SM00924 MgtE intracellular N domain BEN31_09640 SM00387 Histidine kinase-like ATPases BEN31_09640 SM00388 His Kinase A (phosphoacceptor) domain BEN31_09645 SM00448 cheY-homologous receiver domain BEN31_09645 SM00862 Transcriptional regulatory protein, C terminal BEN31_09670 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_09685 SM00028 Tetratricopeptide repeats BEN31_09695 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BEN31_09720 SM00342 helix_turn_helix, arabinose operon control protein BEN31_09755 SM00382 ATPases associated with a variety of cellular activities BEN31_09765 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BEN31_09780 SM00382 ATPases associated with a variety of cellular activities BEN31_09805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_09845 SM01059 Chloramphenicol acetyltransferase BEN31_09850 SM00861 Transketolase, pyrimidine binding domain BEN31_09860 SM00829 Enoylreductase BEN31_09890 SM01022 BEN31_09890 BEN31_09915 SM00257 Lysin motif BEN31_09915 SM00644 BEN31_09915 BEN31_09935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_09950 SM00612 BEN31_09950 BEN31_09955 SM01005 Alanine racemase, C-terminal domain BEN31_09965 SM00871 Bacterial transcription activator, effector binding domain BEN31_09975 SM00028 Tetratricopeptide repeats BEN31_10015 SM00860 SMI1 / KNR4 family BEN31_10025 SM00028 Tetratricopeptide repeats BEN31_10030 SM01059 Chloramphenicol acetyltransferase BEN31_10065 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_10075 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_10080 SM00829 Enoylreductase BEN31_10235 SM00954 Region found in RelA / SpoT proteins BEN31_10245 SM01118 BEN31_10245 BEN31_10275 SM00155 Phospholipase D. Active site motifs. BEN31_10305 SM00382 ATPases associated with a variety of cellular activities BEN31_10310 SM00382 ATPases associated with a variety of cellular activities BEN31_10355 SM00382 ATPases associated with a variety of cellular activities BEN31_10360 SM00382 ATPases associated with a variety of cellular activities BEN31_10370 SM00825 Beta-ketoacyl synthase BEN31_10425 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEN31_10425 SM01209 BEN31_10425 BEN31_10430 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BEN31_10450 SM00859 Semialdehyde dehydrogenase, NAD binding domain BEN31_10505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_10505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_10515 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_10530 SM01018 B12 binding domain BEN31_10550 SM01006 Siderophore biosynthesis protein domain BEN31_10585 SM00342 helix_turn_helix, arabinose operon control protein BEN31_10750 SM00382 ATPases associated with a variety of cellular activities BEN31_10775 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_10785 SM01119 BEN31_10785 BEN31_10795 SM00914 BEN31_10795 BEN31_10810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_10815 SM00855 Phosphoglycerate mutase family BEN31_10845 SM00849 Metallo-beta-lactamase superfamily BEN31_10920 SM00382 ATPases associated with a variety of cellular activities BEN31_10950 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_10980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_11025 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_11065 SM00382 ATPases associated with a variety of cellular activities BEN31_11080 SM00382 ATPases associated with a variety of cellular activities BEN31_11085 SM00382 ATPases associated with a variety of cellular activities BEN31_11135 SM01091 Transporter associated domain BEN31_11140 SM00422 helix_turn_helix, mercury resistance BEN31_11145 SM01091 Transporter associated domain BEN31_11150 SM00563 Phosphate acyltransferases BEN31_11170 SM00257 Lysin motif BEN31_11175 SM00098 Alkaline phosphatase homologues BEN31_11195 SM01060 BEN31_11195 BEN31_11215 SM00421 helix_turn_helix, Lux Regulon BEN31_11215 SM00448 cheY-homologous receiver domain BEN31_11220 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEN31_11295 SM00318 Staphylococcal nuclease homologues BEN31_11300 SM00138 Methyltransferase, chemotaxis proteins BEN31_11300 SM00387 Histidine kinase-like ATPases BEN31_11300 SM00388 His Kinase A (phosphoacceptor) domain BEN31_11330 SM00267 diguanylate cyclase BEN31_11335 SM00357 Cold shock protein domain BEN31_11365 SM00763 PrkA AAA domain BEN31_11385 SM00567 E-Z type HEAT repeats BEN31_11420 SM00382 ATPases associated with a variety of cellular activities BEN31_11465 SM00855 Phosphoglycerate mutase family BEN31_11615 SM00382 ATPases associated with a variety of cellular activities BEN31_11620 SM00382 ATPases associated with a variety of cellular activities BEN31_11625 SM00382 ATPases associated with a variety of cellular activities BEN31_11655 SM00478 endonuclease III BEN31_11710 SM00835 Cupin BEN31_11775 SM00530 Helix-turn-helix XRE-family like proteins BEN31_11795 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_11810 SM00829 Enoylreductase BEN31_11890 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEN31_11910 SM00422 helix_turn_helix, mercury resistance BEN31_11910 SM00871 Bacterial transcription activator, effector binding domain BEN31_11925 SM00478 endonuclease III BEN31_11990 SM00382 ATPases associated with a variety of cellular activities BEN31_12030 SM00226 Low molecular weight phosphatase family BEN31_12060 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_12060 SM00866 BEN31_12060 BEN31_12065 SM00642 Alpha-amylase domain BEN31_12080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_12080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_12155 SM00631 BEN31_12155 BEN31_12170 SM00448 cheY-homologous receiver domain BEN31_12175 SM00387 Histidine kinase-like ATPases BEN31_12190 SM00320 WD40 repeats BEN31_12220 SM00829 Enoylreductase BEN31_12225 SM00487 DEAD-like helicases superfamily BEN31_12225 SM00490 helicase superfamily c-terminal domain BEN31_12230 SM00382 ATPases associated with a variety of cellular activities BEN31_12240 SM00422 helix_turn_helix, mercury resistance BEN31_12250 SM00382 ATPases associated with a variety of cellular activities BEN31_12255 SM00028 Tetratricopeptide repeats BEN31_12400 SM00046 Diacylglycerol kinase catalytic domain (presumed) BEN31_12420 SM00845 GatB domain BEN31_12445 SM00098 Alkaline phosphatase homologues BEN31_12455 SM00823 Phosphopantetheine attachment site BEN31_12455 SM00825 Beta-ketoacyl synthase BEN31_12455 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEN31_12460 SM00822 BEN31_12460 BEN31_12460 SM00823 Phosphopantetheine attachment site BEN31_12460 SM00825 Beta-ketoacyl synthase BEN31_12460 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEN31_12465 SM00822 BEN31_12465 BEN31_12465 SM00823 Phosphopantetheine attachment site BEN31_12465 SM00825 Beta-ketoacyl synthase BEN31_12465 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEN31_12470 SM00823 Phosphopantetheine attachment site BEN31_12470 SM01294 BEN31_12470 BEN31_12475 SM00822 BEN31_12475 BEN31_12475 SM00823 Phosphopantetheine attachment site BEN31_12475 SM00825 Beta-ketoacyl synthase BEN31_12475 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEN31_12475 SM01294 BEN31_12475 BEN31_12530 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEN31_12530 SM00292 breast cancer carboxy-terminal domain BEN31_12530 SM00532 Ligase N family BEN31_12580 SM00882 Coenzyme A transferase BEN31_12585 SM00882 Coenzyme A transferase BEN31_12610 SM01209 BEN31_12610 BEN31_12610 SM01210 BEN31_12610 BEN31_12615 SM00798 AICARFT/IMPCHase bienzyme BEN31_12615 SM00851 MGS-like domain BEN31_12640 SM01211 BEN31_12640 BEN31_12655 SM00998 Adenylosuccinate lyase C-terminus BEN31_12665 SM01001 AIR carboxylase BEN31_12715 SM00850 LytTr DNA-binding domain BEN31_12760 SM00342 helix_turn_helix, arabinose operon control protein BEN31_12765 SM00917 LeuA allosteric (dimerisation) domain BEN31_12770 SM00342 helix_turn_helix, arabinose operon control protein BEN31_12785 SM00460 Transglutaminase/protease-like homologues BEN31_12860 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_12880 SM00883 Chaperonin 10 Kd subunit BEN31_12910 SM00881 CoA binding domain BEN31_12920 SM00382 ATPases associated with a variety of cellular activities BEN31_13040 SM00530 Helix-turn-helix XRE-family like proteins BEN31_13060 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_13110 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_13120 SM00870 BEN31_13120 BEN31_13135 SM00422 helix_turn_helix, mercury resistance BEN31_13170 SM00422 helix_turn_helix, mercury resistance BEN31_13175 SM00829 Enoylreductase BEN31_13180 SM01058 CarD-like/TRCF domain BEN31_13185 SM00357 Cold shock protein domain BEN31_13200 SM00829 Enoylreductase BEN31_13220 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEN31_13270 SM00382 ATPases associated with a variety of cellular activities BEN31_13285 SM00861 Transketolase, pyrimidine binding domain BEN31_13295 SM00731 SprT homologues. BEN31_13300 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_13300 SM00732 Likely ribonuclease with RNase H fold. BEN31_13305 SM00331 Sigma factor PP2C-like phosphatases BEN31_13305 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEN31_13325 SM00331 Sigma factor PP2C-like phosphatases BEN31_13355 SM01005 Alanine racemase, C-terminal domain BEN31_13385 SM00487 DEAD-like helicases superfamily BEN31_13385 SM00490 helicase superfamily c-terminal domain BEN31_13430 SM00382 ATPases associated with a variety of cellular activities BEN31_13450 SM00448 cheY-homologous receiver domain BEN31_13455 SM00091 PAS domain BEN31_13455 SM00387 Histidine kinase-like ATPases BEN31_13535 SM00267 diguanylate cyclase BEN31_13545 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BEN31_13545 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BEN31_13545 SM00493 BEN31_13545 BEN31_13550 SM01329 BEN31_13550 BEN31_13560 SM00342 helix_turn_helix, arabinose operon control protein BEN31_13565 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_13565 SM00895 BEN31_13565 BEN31_13625 SM00346 helix_turn_helix isocitrate lyase regulation BEN31_13630 SM00797 Allophanate hydrolase subunit 2 BEN31_13635 SM00796 Allophanate hydrolase subunit 1 BEN31_13660 SM00894 Excalibur calcium-binding domain BEN31_13685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_13685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_13685 SM01049 BEN31_13685 BEN31_13735 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_13740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEN31_13765 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEN31_13780 SM00382 ATPases associated with a variety of cellular activities BEN31_13790 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_13790 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEN31_13805 SM00710 Parallel beta-helix repeats BEN31_13820 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_13830 SM00382 ATPases associated with a variety of cellular activities BEN31_13845 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_13865 SM00382 ATPases associated with a variety of cellular activities BEN31_13880 SM00824 Thioesterase BEN31_13885 SM00822 BEN31_13885 BEN31_13890 SM00822 BEN31_13890 BEN31_13890 SM00823 Phosphopantetheine attachment site BEN31_13895 SM00823 Phosphopantetheine attachment site BEN31_13900 SM00823 Phosphopantetheine attachment site BEN31_13905 SM00823 Phosphopantetheine attachment site BEN31_13920 SM00382 ATPases associated with a variety of cellular activities BEN31_13950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_13950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_13965 SM00344 helix_turn_helix ASNC type BEN31_13980 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_14050 SM00354 helix_turn _helix lactose operon repressor BEN31_14055 SM01130 BEN31_14055 BEN31_14105 SM00354 helix_turn _helix lactose operon repressor BEN31_14150 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_14150 SM00382 ATPases associated with a variety of cellular activities BEN31_14245 SM00382 ATPases associated with a variety of cellular activities BEN31_14250 SM00448 cheY-homologous receiver domain BEN31_14250 SM00850 LytTr DNA-binding domain BEN31_14255 SM00387 Histidine kinase-like ATPases BEN31_14275 SM00448 cheY-homologous receiver domain BEN31_14280 SM00387 Histidine kinase-like ATPases BEN31_14320 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_14425 SM00872 Alpha mannosidase, middle domain BEN31_14460 SM01061 CAT RNA binding domain BEN31_14475 SM00450 Rhodanese Homology Domain BEN31_14505 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_14520 SM00946 Prolyl-tRNA synthetase, C-terminal BEN31_14535 SM00450 Rhodanese Homology Domain BEN31_14535 SM00849 Metallo-beta-lactamase superfamily BEN31_14540 SM00450 Rhodanese Homology Domain BEN31_14545 SM00450 Rhodanese Homology Domain BEN31_14620 SM00382 ATPases associated with a variety of cellular activities BEN31_14625 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_14650 SM00382 ATPases associated with a variety of cellular activities BEN31_14820 SM01251 BEN31_14820 BEN31_14835 SM00646 BEN31_14835 BEN31_14890 SM00382 ATPases associated with a variety of cellular activities BEN31_14895 SM00382 ATPases associated with a variety of cellular activities BEN31_14905 SM00662 RNA polymerases D BEN31_14925 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_14990 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BEN31_14995 SM01374 BEN31_14995 BEN31_15015 SM00322 K homology RNA-binding domain BEN31_15030 SM01382 BEN31_15030 BEN31_15030 SM01383 BEN31_15030 BEN31_15050 SM01403 BEN31_15050 BEN31_15065 SM00838 Elongation factor G C-terminus BEN31_15065 SM00889 Elongation factor G, domain IV BEN31_15085 SM00663 RNA polymerase I subunit A N-terminus BEN31_15115 SM00649 Ribosomal protein L11/L12 BEN31_15120 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BEN31_15120 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BEN31_15140 SM00967 RNA 2'-O ribose methyltransferase substrate binding BEN31_15145 SM00535 Ribonuclease III family BEN31_15150 SM00840 BEN31_15150 BEN31_15175 SM00670 Large family of predicted nucleotide-binding domains BEN31_15185 SM00382 ATPases associated with a variety of cellular activities BEN31_15190 SM00382 ATPases associated with a variety of cellular activities BEN31_15190 SM01086 C-terminal, D2-small domain, of ClpB protein BEN31_15295 SM00530 Helix-turn-helix XRE-family like proteins BEN31_15305 SM00905 Dihydroneopterin aldolase BEN31_15350 SM00382 ATPases associated with a variety of cellular activities BEN31_15360 SM00977 TilS substrate C-terminal domain BEN31_15365 SM00220 Serine/Threonine protein kinases, catalytic domain BEN31_15375 SM00331 Sigma factor PP2C-like phosphatases BEN31_15375 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEN31_15390 SM00316 Ribosomal protein S1-like RNA-binding domain BEN31_15410 SM00363 S4 RNA-binding domain BEN31_15425 SM00966 SpoVT / AbrB like domain BEN31_15430 SM00487 DEAD-like helicases superfamily BEN31_15430 SM00490 helicase superfamily c-terminal domain BEN31_15430 SM00982 BEN31_15430 BEN31_15430 SM01058 CarD-like/TRCF domain BEN31_15450 SM01400 BEN31_15450 BEN31_15495 SM00650 Ribosomal RNA adenine dimethylases BEN31_15500 SM00493 BEN31_15500 BEN31_15505 SM01208 BEN31_15505 BEN31_15520 SM00966 SpoVT / AbrB like domain BEN31_15530 SM00465 GIY-YIG type nucleases (URI domain) BEN31_15625 SM00493 BEN31_15625 BEN31_15635 SM00382 ATPases associated with a variety of cellular activities BEN31_15655 SM00257 Lysin motif BEN31_15655 SM00636 BEN31_15655 BEN31_15675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_15695 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_15700 SM00936 Penicillin-binding protein 5, C-terminal domain BEN31_15705 SM00116 Domain in cystathionine beta-synthase and other proteins. BEN31_15705 SM01240 BEN31_15705 BEN31_15740 SM00434 DNA Topoisomerase IV BEN31_15745 SM00387 Histidine kinase-like ATPases BEN31_15745 SM00433 TopoisomeraseII BEN31_15765 SM00480 DNA polymerase III beta subunit BEN31_15770 SM00382 ATPases associated with a variety of cellular activities BEN31_15770 SM00760 Bacterial dnaA protein helix-turn-helix domain BEN31_15790 SM00393 Putative single-stranded nucleic acids-binding domain BEN31_15790 SM01245 BEN31_15790 BEN31_15800 SM01228 BEN31_15800 BEN31_15810 SM00470 ParB-like nuclease domain BEN31_15825 SM00470 ParB-like nuclease domain BEN31_15875 SM00382 ATPases associated with a variety of cellular activities BEN31_15900 SM01060 BEN31_15900 BEN31_15920 SM01131 BEN31_15920 BEN31_15930 SM00267 diguanylate cyclase BEN31_15960 SM00342 helix_turn_helix, arabinose operon control protein BEN31_15965 SM00923 MbtH-like protein BEN31_15970 SM00823 Phosphopantetheine attachment site BEN31_15990 SM00822 BEN31_15990 BEN31_16010 SM00382 ATPases associated with a variety of cellular activities BEN31_16030 SM00788 Adenylosuccinate synthetase BEN31_16070 SM00448 cheY-homologous receiver domain BEN31_16070 SM00862 Transcriptional regulatory protein, C terminal BEN31_16075 SM00091 PAS domain BEN31_16075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_16075 SM00387 Histidine kinase-like ATPases BEN31_16075 SM00388 His Kinase A (phosphoacceptor) domain BEN31_16090 SM00849 Metallo-beta-lactamase superfamily BEN31_16095 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_16105 SM00382 ATPases associated with a variety of cellular activities BEN31_16125 SM00382 ATPases associated with a variety of cellular activities BEN31_16170 SM00849 Metallo-beta-lactamase superfamily BEN31_16175 SM00530 Helix-turn-helix XRE-family like proteins BEN31_16175 SM00966 SpoVT / AbrB like domain BEN31_16180 SM00382 ATPases associated with a variety of cellular activities BEN31_16200 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_16200 SM00866 BEN31_16200 BEN31_16255 SM00354 helix_turn _helix lactose operon repressor BEN31_16270 SM00530 Helix-turn-helix XRE-family like proteins BEN31_16305 SM01061 CAT RNA binding domain BEN31_16310 SM00028 Tetratricopeptide repeats BEN31_16320 SM00382 ATPases associated with a variety of cellular activities BEN31_16360 SM00382 ATPases associated with a variety of cellular activities BEN31_16405 SM00354 helix_turn _helix lactose operon repressor BEN31_16455 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEN31_16455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_16465 SM00422 helix_turn_helix, mercury resistance BEN31_16475 SM00421 helix_turn_helix, Lux Regulon BEN31_16505 SM01133 BEN31_16505 BEN31_16515 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BEN31_16520 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_16520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEN31_16575 SM00382 ATPases associated with a variety of cellular activities BEN31_16585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_16595 SM01061 CAT RNA binding domain BEN31_16650 SM00530 Helix-turn-helix XRE-family like proteins BEN31_16655 SM00530 Helix-turn-helix XRE-family like proteins BEN31_16660 SM00870 BEN31_16660 BEN31_16760 SM00725 NEAr Transporter domain BEN31_16765 SM00725 NEAr Transporter domain BEN31_16770 SM00725 NEAr Transporter domain BEN31_16785 SM00382 ATPases associated with a variety of cellular activities BEN31_16805 SM00382 ATPases associated with a variety of cellular activities BEN31_16820 SM00382 ATPases associated with a variety of cellular activities BEN31_16825 SM00382 ATPases associated with a variety of cellular activities BEN31_16830 SM00656 BEN31_16830 BEN31_16850 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEN31_16905 SM00710 Parallel beta-helix repeats BEN31_16915 SM00382 ATPases associated with a variety of cellular activities BEN31_16925 SM00954 Region found in RelA / SpoT proteins BEN31_16935 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_16935 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEN31_16945 SM00382 ATPases associated with a variety of cellular activities BEN31_16955 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BEN31_17025 SM00342 helix_turn_helix, arabinose operon control protein BEN31_17105 SM01061 CAT RNA binding domain BEN31_17115 SM00640 Glycosyl hydrolases family 32 BEN31_17145 SM00986 Uracil DNA glycosylase superfamily BEN31_17145 SM00987 UreE urease accessory protein, C-terminal domain BEN31_17170 SM00835 Cupin BEN31_17205 SM00858 BEN31_17205 BEN31_17275 SM00344 helix_turn_helix ASNC type BEN31_17310 SM00860 SMI1 / KNR4 family BEN31_17345 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEN31_17400 SM00836 DALR anticodon binding domain BEN31_17400 SM01016 Arginyl tRNA synthetase N terminal dom BEN31_17410 SM00155 Phospholipase D. Active site motifs. BEN31_17415 SM00382 ATPases associated with a variety of cellular activities BEN31_17435 SM00155 Phospholipase D. Active site motifs. BEN31_17485 SM00448 cheY-homologous receiver domain BEN31_17510 SM00357 Cold shock protein domain BEN31_17510 SM00382 ATPases associated with a variety of cellular activities BEN31_17510 SM00959 Rho termination factor, N-terminal domain BEN31_17525 SM00919 Malic enzyme, NAD binding domain BEN31_17525 SM01274 BEN31_17525 BEN31_17540 SM00937 BEN31_17540 BEN31_17575 SM00226 Low molecular weight phosphatase family BEN31_17635 SM00382 ATPases associated with a variety of cellular activities BEN31_17670 SM00327 von Willebrand factor (vWF) type A domain BEN31_17675 SM00327 von Willebrand factor (vWF) type A domain BEN31_17695 SM00729 Elongator protein 3, MiaB family, Radical SAM BEN31_17705 SM00833 Cobalamin synthesis protein cobW C-terminal domain BEN31_17730 SM00382 ATPases associated with a variety of cellular activities BEN31_17755 SM00938 Nitrogen regulatory protein P-II BEN31_17765 SM00382 ATPases associated with a variety of cellular activities BEN31_17775 SM00062 Bacterial periplasmic substrate-binding proteins BEN31_17785 SM00014 Acid phosphatase homologues BEN31_17795 SM00347 helix_turn_helix multiple antibiotic resistance protein BEN31_17820 SM00028 Tetratricopeptide repeats BEN31_17850 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEN31_17850 SM00091 PAS domain BEN31_17855 SM00487 DEAD-like helicases superfamily BEN31_17855 SM00490 helicase superfamily c-terminal domain BEN31_17865 SM00984 UDP binding domain BEN31_17880 SM00344 helix_turn_helix ASNC type BEN31_17900 SM00903 Flavin reductase like domain BEN31_17915 SM00382 ATPases associated with a variety of cellular activities BEN31_17930 SM00354 helix_turn _helix lactose operon repressor BEN31_17960 SM00854 Bacterial capsule synthesis protein PGA_cap BEN31_18015 SM00354 helix_turn _helix lactose operon repressor BEN31_18040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_18040 SM00387 Histidine kinase-like ATPases BEN31_18045 SM00342 helix_turn_helix, arabinose operon control protein BEN31_18045 SM00448 cheY-homologous receiver domain BEN31_18070 SM00047 Lysozyme subfamily 2 BEN31_18070 SM00287 Bacterial SH3 domain homologues BEN31_18110 SM00382 ATPases associated with a variety of cellular activities BEN31_18175 SM00646 BEN31_18175 BEN31_18200 SM00984 UDP binding domain BEN31_18245 SM00387 Histidine kinase-like ATPases BEN31_18250 SM00421 helix_turn_helix, Lux Regulon BEN31_18250 SM00448 cheY-homologous receiver domain BEN31_18260 SM00487 DEAD-like helicases superfamily BEN31_18260 SM00490 helicase superfamily c-terminal domain BEN31_18340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEN31_18340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_18350 SM00957 SecA DEAD-like domain BEN31_18350 SM00958 SecA preprotein cross-linking domain BEN31_18355 SM00937 BEN31_18355 BEN31_18380 SM00382 ATPases associated with a variety of cellular activities BEN31_18400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_18400 SM00245 tail specific protease BEN31_18410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEN31_18430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEN31_18430 SM00387 Histidine kinase-like ATPases BEN31_18430 SM00388 His Kinase A (phosphoacceptor) domain BEN31_18435 SM00448 cheY-homologous receiver domain BEN31_18435 SM00862 Transcriptional regulatory protein, C terminal BEN31_18470 SM00487 DEAD-like helicases superfamily BEN31_18470 SM00490 helicase superfamily c-terminal domain BEN31_18475 SM00382 ATPases associated with a variety of cellular activities BEN31_18510 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEN31_18510 SM00866 BEN31_18510 BEN31_18605 SM00028 Tetratricopeptide repeats BEN31_18660 SM00947 Carbonic anhydrase BEN31_18785 SM00028 Tetratricopeptide repeats