BPUM_0001 SM00382 ATPases associated with a variety of cellular activities BPUM_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BPUM_0002 SM00480 DNA polymerase III beta subunit BPUM_0006 SM00387 Histidine kinase-like ATPases BPUM_0006 SM00433 TopoisomeraseII BPUM_0007 SM00434 DNA Topoisomerase IV BPUM_0019 SM00465 GIY-YIG type nucleases (URI domain) BPUM_0021 SM00966 SpoVT / AbrB like domain BPUM_0024 SM01208 BPUM_0024 BPUM_0025 SM00493 BPUM_0025 BPUM_0026 SM00650 Ribosomal RNA adenine dimethylases BPUM_0035 SM01400 BPUM_0035 BPUM_0039 SM00487 DEAD-like helicases superfamily BPUM_0039 SM00490 helicase superfamily c-terminal domain BPUM_0039 SM00982 BPUM_0039 BPUM_0039 SM01058 CarD-like/TRCF domain BPUM_0040 SM00966 SpoVT / AbrB like domain BPUM_0043 SM00363 S4 RNA-binding domain BPUM_0047 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_0048 SM00331 Sigma factor PP2C-like phosphatases BPUM_0048 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BPUM_0050 SM00220 Serine/Threonine protein kinases, catalytic domain BPUM_0051 SM00977 TilS substrate C-terminal domain BPUM_0053 SM00382 ATPases associated with a variety of cellular activities BPUM_0062 SM00905 Dihydroneopterin aldolase BPUM_0064 SM00530 Helix-turn-helix XRE-family like proteins BPUM_0071 SM00382 ATPases associated with a variety of cellular activities BPUM_0071 SM01086 C-terminal, D2-small domain, of ClpB protein BPUM_0072 SM00382 ATPases associated with a variety of cellular activities BPUM_0074 SM00670 Large family of predicted nucleotide-binding domains BPUM_0079 SM00840 BPUM_0079 BPUM_0080 SM00535 Ribonuclease III family BPUM_0081 SM00967 RNA 2'-O ribose methyltransferase substrate binding BPUM_0086 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BPUM_0086 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BPUM_0087 SM00649 Ribosomal protein L11/L12 BPUM_0094 SM00663 RNA polymerase I subunit A N-terminus BPUM_0098 SM00838 Elongation factor G C-terminus BPUM_0098 SM00889 Elongation factor G, domain IV BPUM_0101 SM01403 BPUM_0101 BPUM_0105 SM01382 BPUM_0105 BPUM_0105 SM01383 BPUM_0105 BPUM_0108 SM00322 K homology RNA-binding domain BPUM_0112 SM01374 BPUM_0112 BPUM_0113 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BPUM_0126 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_0130 SM00662 RNA polymerases D BPUM_0132 SM00382 ATPases associated with a variety of cellular activities BPUM_0133 SM00382 ATPases associated with a variety of cellular activities BPUM_0144 SM00646 BPUM_0144 BPUM_0147 SM01251 BPUM_0147 BPUM_0169 SM00382 ATPases associated with a variety of cellular activities BPUM_0174 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_0175 SM00382 ATPases associated with a variety of cellular activities BPUM_0177 SM00530 Helix-turn-helix XRE-family like proteins BPUM_0191 SM00450 Rhodanese Homology Domain BPUM_0192 SM00450 Rhodanese Homology Domain BPUM_0193 SM00450 Rhodanese Homology Domain BPUM_0193 SM00849 Metallo-beta-lactamase superfamily BPUM_0197 SM00946 Prolyl-tRNA synthetase, C-terminal BPUM_0200 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_0205 SM00450 Rhodanese Homology Domain BPUM_0208 SM01061 CAT RNA binding domain BPUM_0216 SM00872 Alpha mannosidase, middle domain BPUM_0238 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_0245 SM00387 Histidine kinase-like ATPases BPUM_0246 SM00448 cheY-homologous receiver domain BPUM_0250 SM00387 Histidine kinase-like ATPases BPUM_0251 SM00448 cheY-homologous receiver domain BPUM_0251 SM00850 LytTr DNA-binding domain BPUM_0252 SM00382 ATPases associated with a variety of cellular activities BPUM_0270 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_0270 SM00382 ATPases associated with a variety of cellular activities BPUM_0279 SM00354 helix_turn _helix lactose operon repressor BPUM_0291 SM01130 BPUM_0291 BPUM_0292 SM00354 helix_turn _helix lactose operon repressor BPUM_0305 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_0308 SM00344 helix_turn_helix ASNC type BPUM_0311 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_0311 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_0317 SM00382 ATPases associated with a variety of cellular activities BPUM_0319 SM00823 Phosphopantetheine attachment site BPUM_0320 SM00823 Phosphopantetheine attachment site BPUM_0322 SM00822 BPUM_0322 BPUM_0323 SM00822 BPUM_0323 BPUM_0323 SM00824 Thioesterase BPUM_0324 SM00824 Thioesterase BPUM_0326 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_0337 SM00382 ATPases associated with a variety of cellular activities BPUM_0338 SM00382 ATPases associated with a variety of cellular activities BPUM_0340 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_0344 SM00710 Parallel beta-helix repeats BPUM_0347 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_0347 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BPUM_0349 SM00382 ATPases associated with a variety of cellular activities BPUM_0353 SM00448 cheY-homologous receiver domain BPUM_0353 SM00862 Transcriptional regulatory protein, C terminal BPUM_0354 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_0354 SM00387 Histidine kinase-like ATPases BPUM_0354 SM00388 His Kinase A (phosphoacceptor) domain BPUM_0355 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BPUM_0360 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BPUM_0361 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_0372 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_0372 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_0372 SM01049 BPUM_0372 BPUM_0377 SM00894 Excalibur calcium-binding domain BPUM_0382 SM00796 Allophanate hydrolase subunit 1 BPUM_0383 SM00797 Allophanate hydrolase subunit 2 BPUM_0384 SM00346 helix_turn_helix isocitrate lyase regulation BPUM_03965 SM00822 BPUM_03965 BPUM_03965 SM00823 Phosphopantetheine attachment site BPUM_03965 SM00825 Beta-ketoacyl synthase BPUM_03965 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BPUM_03965 SM01294 BPUM_03965 BPUM_0397 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_0397 SM00895 BPUM_0397 BPUM_0399 SM01329 BPUM_0399 BPUM_0400 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BPUM_0400 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BPUM_0400 SM00493 BPUM_0400 BPUM_0402 SM00267 diguanylate cyclase BPUM_0417 SM00091 PAS domain BPUM_0417 SM00387 Histidine kinase-like ATPases BPUM_0418 SM00448 cheY-homologous receiver domain BPUM_0422 SM00382 ATPases associated with a variety of cellular activities BPUM_0431 SM00487 DEAD-like helicases superfamily BPUM_0431 SM00490 helicase superfamily c-terminal domain BPUM_04360 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_04360 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BPUM_04365 SM00725 NEAr Transporter domain BPUM_0437 SM01005 Alanine racemase, C-terminal domain BPUM_0443 SM00331 Sigma factor PP2C-like phosphatases BPUM_0445 SM00387 Histidine kinase-like ATPases BPUM_0447 SM00331 Sigma factor PP2C-like phosphatases BPUM_0448 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_0448 SM00732 Likely ribonuclease with RNase H fold. BPUM_0450 SM00731 SprT homologues. BPUM_0452 SM00861 Transketolase, pyrimidine binding domain BPUM_0455 SM00382 ATPases associated with a variety of cellular activities BPUM_0459 SM00357 Cold shock protein domain BPUM_0460 SM01058 CarD-like/TRCF domain BPUM_0461 SM00829 Enoylreductase BPUM_0462 SM00422 helix_turn_helix, mercury resistance BPUM_0470 SM00870 BPUM_0470 BPUM_0472 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_0477 SM00850 LytTr DNA-binding domain BPUM_0486 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_0491 SM00530 Helix-turn-helix XRE-family like proteins BPUM_0504 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_0504 SM01240 BPUM_0504 BPUM_0505 SM00936 Penicillin-binding protein 5, C-terminal domain BPUM_0506 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_0510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_0513 SM00257 Lysin motif BPUM_0513 SM00636 BPUM_0513 BPUM_0516 SM00382 ATPases associated with a variety of cellular activities BPUM_0518 SM00493 BPUM_0518 BPUM_0526 SM00382 ATPases associated with a variety of cellular activities BPUM_0528 SM00881 CoA binding domain BPUM_0534 SM00883 Chaperonin 10 Kd subunit BPUM_0547 SM00460 Transglutaminase/protease-like homologues BPUM_0550 SM00530 Helix-turn-helix XRE-family like proteins BPUM_0551 SM00530 Helix-turn-helix XRE-family like proteins BPUM_0556 SM01022 BPUM_0556 BPUM_0581 SM00342 helix_turn_helix, arabinose operon control protein BPUM_0582 SM00917 LeuA allosteric (dimerisation) domain BPUM_0583 SM00342 helix_turn_helix, arabinose operon control protein BPUM_0584 SM00342 helix_turn_helix, arabinose operon control protein BPUM_0584 SM00871 Bacterial transcription activator, effector binding domain BPUM_0596 SM01001 AIR carboxylase BPUM_0598 SM00998 Adenylosuccinate lyase C-terminus BPUM_0601 SM01211 BPUM_0601 BPUM_0606 SM00798 AICARFT/IMPCHase bienzyme BPUM_0606 SM00851 MGS-like domain BPUM_0607 SM01209 BPUM_0607 BPUM_0607 SM01210 BPUM_0607 BPUM_0608 SM00487 DEAD-like helicases superfamily BPUM_0613 SM00882 Coenzyme A transferase BPUM_0614 SM00882 Coenzyme A transferase BPUM_0626 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BPUM_0626 SM00292 breast cancer carboxy-terminal domain BPUM_0626 SM00532 Ligase N family BPUM_0636 SM00823 Phosphopantetheine attachment site BPUM_0637 SM00822 BPUM_0637 BPUM_0637 SM00823 Phosphopantetheine attachment site BPUM_0637 SM00825 Beta-ketoacyl synthase BPUM_0637 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BPUM_0638 SM00822 BPUM_0638 BPUM_0638 SM00823 Phosphopantetheine attachment site BPUM_0638 SM00825 Beta-ketoacyl synthase BPUM_0638 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BPUM_0639 SM00823 Phosphopantetheine attachment site BPUM_0639 SM00825 Beta-ketoacyl synthase BPUM_0639 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BPUM_0641 SM00098 Alkaline phosphatase homologues BPUM_0646 SM00845 GatB domain BPUM_0650 SM00046 Diacylglycerol kinase catalytic domain (presumed) BPUM_0690 SM00028 Tetratricopeptide repeats BPUM_0691 SM00382 ATPases associated with a variety of cellular activities BPUM_0692 SM00422 helix_turn_helix, mercury resistance BPUM_0694 SM00382 ATPases associated with a variety of cellular activities BPUM_0695 SM00487 DEAD-like helicases superfamily BPUM_0695 SM00490 helicase superfamily c-terminal domain BPUM_0696 SM00829 Enoylreductase BPUM_0702 SM00320 WD40 repeats BPUM_0707 SM00387 Histidine kinase-like ATPases BPUM_0708 SM00448 cheY-homologous receiver domain BPUM_0711 SM00631 BPUM_0711 BPUM_0726 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_0726 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_0729 SM00642 Alpha-amylase domain BPUM_0730 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_0730 SM00866 BPUM_0730 BPUM_0736 SM00226 Low molecular weight phosphatase family BPUM_0752 SM00478 endonuclease III BPUM_0758 SM00422 helix_turn_helix, mercury resistance BPUM_0758 SM00871 Bacterial transcription activator, effector binding domain BPUM_0761 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BPUM_0783 SM00829 Enoylreductase BPUM_0786 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_0790 SM00530 Helix-turn-helix XRE-family like proteins BPUM_0805 SM00835 Cupin BPUM_0810 SM00478 endonuclease III BPUM_0818 SM00382 ATPases associated with a variety of cellular activities BPUM_0819 SM00382 ATPases associated with a variety of cellular activities BPUM_0820 SM00382 ATPases associated with a variety of cellular activities BPUM_0834 SM00855 Phosphoglycerate mutase family BPUM_0845 SM00567 E-Z type HEAT repeats BPUM_0851 SM00382 ATPases associated with a variety of cellular activities BPUM_0856 SM00763 PrkA AAA domain BPUM_0862 SM00357 Cold shock protein domain BPUM_0863 SM00267 diguanylate cyclase BPUM_0869 SM00138 Methyltransferase, chemotaxis proteins BPUM_0869 SM00387 Histidine kinase-like ATPases BPUM_0869 SM00388 His Kinase A (phosphoacceptor) domain BPUM_0870 SM00318 Staphylococcal nuclease homologues BPUM_0886 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BPUM_0887 SM00421 helix_turn_helix, Lux Regulon BPUM_0887 SM00448 cheY-homologous receiver domain BPUM_0892 SM01060 BPUM_0892 BPUM_0896 SM00098 Alkaline phosphatase homologues BPUM_0897 SM00257 Lysin motif BPUM_0903 SM00563 Phosphate acyltransferases BPUM_0904 SM01091 Transporter associated domain BPUM_0905 SM00422 helix_turn_helix, mercury resistance BPUM_0906 SM01091 Transporter associated domain BPUM_0918 SM00382 ATPases associated with a variety of cellular activities BPUM_0919 SM00382 ATPases associated with a variety of cellular activities BPUM_0922 SM00382 ATPases associated with a variety of cellular activities BPUM_0930 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_0936 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_0944 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_0951 SM00382 ATPases associated with a variety of cellular activities BPUM_0967 SM00849 Metallo-beta-lactamase superfamily BPUM_0973 SM00855 Phosphoglycerate mutase family BPUM_0974 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_0977 SM00914 BPUM_0977 BPUM_0979 SM01119 BPUM_0979 BPUM_0981 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_0986 SM00382 ATPases associated with a variety of cellular activities BPUM_1014 SM00342 helix_turn_helix, arabinose operon control protein BPUM_1022 SM01006 Siderophore biosynthesis protein domain BPUM_1026 SM01018 B12 binding domain BPUM_1029 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_1031 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_1031 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_1042 SM00859 Semialdehyde dehydrogenase, NAD binding domain BPUM_1046 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BPUM_1047 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BPUM_1058 SM00825 Beta-ketoacyl synthase BPUM_1060 SM00382 ATPases associated with a variety of cellular activities BPUM_1061 SM00382 ATPases associated with a variety of cellular activities BPUM_1073 SM00382 ATPases associated with a variety of cellular activities BPUM_1074 SM00382 ATPases associated with a variety of cellular activities BPUM_1080 SM00155 Phospholipase D. Active site motifs. BPUM_1087 SM01118 BPUM_1087 BPUM_1089 SM00954 Region found in RelA / SpoT proteins BPUM_1121 SM00860 SMI1 / KNR4 family BPUM_1126 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1131 SM01059 Chloramphenicol acetyltransferase BPUM_1132 SM00028 Tetratricopeptide repeats BPUM_1134 SM00860 SMI1 / KNR4 family BPUM_1141 SM00028 Tetratricopeptide repeats BPUM_1144 SM00871 Bacterial transcription activator, effector binding domain BPUM_1146 SM01005 Alanine racemase, C-terminal domain BPUM_1147 SM00829 Enoylreductase BPUM_1154 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_1158 SM00257 Lysin motif BPUM_1158 SM00644 BPUM_1158 BPUM_1163 SM01022 BPUM_1163 BPUM_1170 SM00829 Enoylreductase BPUM_1172 SM00861 Transketolase, pyrimidine binding domain BPUM_1173 SM01059 Chloramphenicol acetyltransferase BPUM_1181 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_1187 SM00382 ATPases associated with a variety of cellular activities BPUM_1190 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BPUM_1192 SM00382 ATPases associated with a variety of cellular activities BPUM_1200 SM00342 helix_turn_helix, arabinose operon control protein BPUM_1207 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BPUM_1209 SM00028 Tetratricopeptide repeats BPUM_1212 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1219 SM00448 cheY-homologous receiver domain BPUM_1219 SM00862 Transcriptional regulatory protein, C terminal BPUM_1220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_1220 SM00387 Histidine kinase-like ATPases BPUM_1220 SM00388 His Kinase A (phosphoacceptor) domain BPUM_1225 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_1225 SM00924 MgtE intracellular N domain BPUM_1230 SM00422 helix_turn_helix, mercury resistance BPUM_1233 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1234 SM00052 Putative diguanylate phosphodiesterase BPUM_1234 SM00267 diguanylate cyclase BPUM_1247 SM00091 PAS domain BPUM_1247 SM00387 Histidine kinase-like ATPases BPUM_1247 SM00388 His Kinase A (phosphoacceptor) domain BPUM_1254 SM01007 Class II Aldolase and Adducin N-terminal domain BPUM_1257 SM00387 Histidine kinase-like ATPases BPUM_1257 SM00388 His Kinase A (phosphoacceptor) domain BPUM_1258 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1261 SM00382 ATPases associated with a variety of cellular activities BPUM_1261 SM01086 C-terminal, D2-small domain, of ClpB protein BPUM_1277 SM00354 helix_turn _helix lactose operon repressor BPUM_1278 SM01061 CAT RNA binding domain BPUM_1284 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_1284 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_1290 SM00091 PAS domain BPUM_1290 SM00387 Histidine kinase-like ATPases BPUM_1290 SM00388 His Kinase A (phosphoacceptor) domain BPUM_1296 SM00260 Two component signalling adaptor domain BPUM_1296 SM00448 cheY-homologous receiver domain BPUM_1301 SM00257 Lysin motif BPUM_1304 SM00052 Putative diguanylate phosphodiesterase BPUM_1325 SM00852 Probable molybdopterin binding domain BPUM_1332 SM00382 ATPases associated with a variety of cellular activities BPUM_1334 SM00420 helix_turn_helix, Deoxyribose operon repressor BPUM_1334 SM01134 BPUM_1334 BPUM_1339 SM00382 ATPases associated with a variety of cellular activities BPUM_1344 SM00966 SpoVT / AbrB like domain BPUM_1345 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BPUM_1345 SM00091 PAS domain BPUM_1345 SM00387 Histidine kinase-like ATPases BPUM_1345 SM00388 His Kinase A (phosphoacceptor) domain BPUM_1349 SM00849 Metallo-beta-lactamase superfamily BPUM_1356 SM00861 Transketolase, pyrimidine binding domain BPUM_1368 SM00838 Elongation factor G C-terminus BPUM_1372 SM00670 Large family of predicted nucleotide-binding domains BPUM_1377 SM00878 Biotin carboxylase C-terminal domain BPUM_1387 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_1398 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_1402 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BPUM_1409 SM00740 BPUM_1409 BPUM_1410 SM00740 BPUM_1410 BPUM_1421 SM00842 Cell division protein FtsA BPUM_1422 SM00864 Tubulin/FtsZ family, GTPase domain BPUM_1422 SM00865 Tubulin/FtsZ family, C-terminal domain BPUM_1429 SM00858 BPUM_1429 BPUM_1434 SM00382 ATPases associated with a variety of cellular activities BPUM_1440 SM00363 S4 RNA-binding domain BPUM_1445 SM00363 S4 RNA-binding domain BPUM_1450 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BPUM_1451 SM00851 MGS-like domain BPUM_1451 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BPUM_1451 SM01209 BPUM_1451 BPUM_1454 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BPUM_1464 SM00831 Cation transporter/ATPase, N-terminus BPUM_1467 SM00072 Guanylate kinase homologues. BPUM_1468 SM01409 BPUM_1468 BPUM_1470 SM00487 DEAD-like helicases superfamily BPUM_1470 SM00490 helicase superfamily c-terminal domain BPUM_1475 SM00331 Sigma factor PP2C-like phosphatases BPUM_1475 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BPUM_1476 SM00220 Serine/Threonine protein kinases, catalytic domain BPUM_1476 SM00740 BPUM_1476 BPUM_1479 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BPUM_1483 SM01120 BPUM_1483 BPUM_1483 SM01121 BPUM_1483 BPUM_1486 SM00487 DEAD-like helicases superfamily BPUM_1486 SM00490 helicase superfamily c-terminal domain BPUM_1489 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BPUM_1490 SM00822 BPUM_1490 BPUM_1492 SM00358 Double-stranded RNA binding motif BPUM_1492 SM00535 Ribonuclease III family BPUM_1493 SM00968 SMC proteins Flexible Hinge Domain BPUM_1494 SM00382 ATPases associated with a variety of cellular activities BPUM_1494 SM00962 SRP54-type protein, GTPase domain BPUM_1494 SM00963 SRP54-type protein, helical bundle domain BPUM_1496 SM00382 ATPases associated with a variety of cellular activities BPUM_1496 SM00962 SRP54-type protein, GTPase domain BPUM_1496 SM00963 SRP54-type protein, helical bundle domain BPUM_1508 SM00881 CoA binding domain BPUM_1510 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BPUM_1510 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BPUM_1510 SM00493 BPUM_1510 BPUM_1514 SM00382 ATPases associated with a variety of cellular activities BPUM_1514 SM01086 C-terminal, D2-small domain, of ClpB protein BPUM_1522 SM00382 ATPases associated with a variety of cellular activities BPUM_1532 SM00448 cheY-homologous receiver domain BPUM_1539 SM00382 ATPases associated with a variety of cellular activities BPUM_1539 SM00962 SRP54-type protein, GTPase domain BPUM_1541 SM00448 cheY-homologous receiver domain BPUM_1542 SM00073 Histidine Phosphotransfer domain BPUM_1542 SM00260 Two component signalling adaptor domain BPUM_1542 SM00387 Histidine kinase-like ATPases BPUM_1542 SM01231 BPUM_1542 BPUM_1543 SM00260 Two component signalling adaptor domain BPUM_1555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_1557 SM00479 BPUM_1557 BPUM_1557 SM00481 DNA polymerase alpha chain like domain BPUM_1558 SM01067 Cellulose binding domain BPUM_1560 SM00633 Glycosyl hydrolase family 10 BPUM_1563 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_1563 SM00322 K homology RNA-binding domain BPUM_1570 SM00904 Riboflavin kinase BPUM_1571 SM01387 BPUM_1571 BPUM_1572 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_1572 SM00322 K homology RNA-binding domain BPUM_1579 SM00859 Semialdehyde dehydrogenase, NAD binding domain BPUM_1581 SM01130 BPUM_1581 BPUM_1582 SM00849 Metallo-beta-lactamase superfamily BPUM_1585 SM00382 ATPases associated with a variety of cellular activities BPUM_1585 SM00843 BPUM_1585 BPUM_1586 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_1586 SM00866 BPUM_1586 BPUM_1590 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1595 SM00530 Helix-turn-helix XRE-family like proteins BPUM_1597 SM00852 Probable molybdopterin binding domain BPUM_1598 SM00382 ATPases associated with a variety of cellular activities BPUM_1599 SM00322 K homology RNA-binding domain BPUM_1599 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_1603 SM00829 Enoylreductase BPUM_1605 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_1608 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BPUM_1608 SM00534 ATPase domain of DNA mismatch repair MUTS family BPUM_1609 SM00853 MutL C terminal dimerisation domain BPUM_1609 SM01340 BPUM_1609 BPUM_1613 SM01058 CarD-like/TRCF domain BPUM_1615 SM00028 Tetratricopeptide repeats BPUM_1632 SM00646 BPUM_1632 BPUM_1633 SM00382 ATPases associated with a variety of cellular activities BPUM_1636 SM00422 helix_turn_helix, mercury resistance BPUM_1637 SM01230 BPUM_1637 BPUM_1651 SM00028 Tetratricopeptide repeats BPUM_1656 SM00506 Appr-1"-p processing enzyme BPUM_1658 SM00014 Acid phosphatase homologues BPUM_1667 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BPUM_1681 SM00020 Trypsin-like serine protease BPUM_1687 SM00257 Lysin motif BPUM_1688 SM00857 Resolvase, N terminal domain BPUM_1690 SM00861 Transketolase, pyrimidine binding domain BPUM_1707 SM01207 BPUM_1707 BPUM_1708 SM00881 CoA binding domain BPUM_1709 SM00387 Histidine kinase-like ATPases BPUM_1709 SM00433 TopoisomeraseII BPUM_1710 SM00434 DNA Topoisomerase IV BPUM_1717 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1729 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1740 SM00422 helix_turn_helix, mercury resistance BPUM_1743 SM01061 CAT RNA binding domain BPUM_1745 SM00387 Histidine kinase-like ATPases BPUM_1745 SM00388 His Kinase A (phosphoacceptor) domain BPUM_1746 SM00448 cheY-homologous receiver domain BPUM_1746 SM00862 Transcriptional regulatory protein, C terminal BPUM_1748 SM00606 Cellulose Binding Domain Type IV BPUM_1754 SM00354 helix_turn _helix lactose operon repressor BPUM_1765 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1772 SM00155 Phospholipase D. Active site motifs. BPUM_1774 SM00100 Cyclic nucleotide-monophosphate binding domain BPUM_1784 SM00878 Biotin carboxylase C-terminal domain BPUM_1789 SM00420 helix_turn_helix, Deoxyribose operon repressor BPUM_1789 SM01134 BPUM_1789 BPUM_1816 SM00382 ATPases associated with a variety of cellular activities BPUM_1817 SM00382 ATPases associated with a variety of cellular activities BPUM_1818 SM00422 helix_turn_helix, mercury resistance BPUM_1823 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BPUM_1826 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BPUM_1839 SM00849 Metallo-beta-lactamase superfamily BPUM_1840 SM00871 Bacterial transcription activator, effector binding domain BPUM_1843 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BPUM_1851 SM00257 Lysin motif BPUM_1852 SM00341 Helicase and RNase D C-terminal BPUM_1852 SM00487 DEAD-like helicases superfamily BPUM_1852 SM00490 helicase superfamily c-terminal domain BPUM_1852 SM00956 BPUM_1852 BPUM_1862 SM00861 Transketolase, pyrimidine binding domain BPUM_1863 SM00327 von Willebrand factor (vWF) type A domain BPUM_1864 SM00382 ATPases associated with a variety of cellular activities BPUM_1880 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_1880 SM00245 tail specific protease BPUM_1886 SM00014 Acid phosphatase homologues BPUM_1893 SM00091 PAS domain BPUM_1893 SM00382 ATPases associated with a variety of cellular activities BPUM_1902 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_1923 SM00567 E-Z type HEAT repeats BPUM_1923 SM00932 Scaffold protein Nfu/NifU N terminal BPUM_1924 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_1930 SM00357 Cold shock protein domain BPUM_1937 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BPUM_1937 SM00475 5'-3' exonuclease BPUM_1946 SM00491 BPUM_1946 BPUM_1950 SM00981 BPUM_1950 BPUM_1954 SM00487 DEAD-like helicases superfamily BPUM_1954 SM00490 helicase superfamily c-terminal domain BPUM_1966 SM00478 endonuclease III BPUM_1966 SM00525 BPUM_1966 BPUM_1971 SM00479 BPUM_1971 BPUM_1971 SM00491 BPUM_1971 BPUM_1979 SM00851 MGS-like domain BPUM_1989 SM00914 BPUM_1989 BPUM_1990 SM00028 Tetratricopeptide repeats BPUM_2003 SM00138 Methyltransferase, chemotaxis proteins BPUM_2004 SM00562 BPUM_2004 BPUM_2010 SM00411 bacterial (prokaryotic) histone like domain BPUM_2020 SM01240 BPUM_2020 BPUM_2021 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_2029 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BPUM_2033 SM00257 Lysin motif BPUM_2035 SM00487 DEAD-like helicases superfamily BPUM_2035 SM00490 helicase superfamily c-terminal domain BPUM_2040 SM00257 Lysin motif BPUM_2044 SM00091 PAS domain BPUM_2044 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_2044 SM00387 Histidine kinase-like ATPases BPUM_2044 SM00388 His Kinase A (phosphoacceptor) domain BPUM_2045 SM00448 cheY-homologous receiver domain BPUM_2045 SM00862 Transcriptional regulatory protein, C terminal BPUM_2049 SM00363 S4 RNA-binding domain BPUM_2077 SM00387 Histidine kinase-like ATPases BPUM_2079 SM00936 Penicillin-binding protein 5, C-terminal domain BPUM_2096 SM00028 Tetratricopeptide repeats BPUM_2108 SM00849 Metallo-beta-lactamase superfamily BPUM_2115 SM00849 Metallo-beta-lactamase superfamily BPUM_2117 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_2117 SM00866 BPUM_2117 BPUM_2124 SM01350 BPUM_2124 BPUM_2129 SM00260 Two component signalling adaptor domain BPUM_2136 SM00382 ATPases associated with a variety of cellular activities BPUM_2138 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_2138 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BPUM_2140 SM00046 Diacylglycerol kinase catalytic domain (presumed) BPUM_2143 SM00861 Transketolase, pyrimidine binding domain BPUM_2147 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BPUM_2149 SM00091 PAS domain BPUM_2149 SM00382 ATPases associated with a variety of cellular activities BPUM_2154 SM00448 cheY-homologous receiver domain BPUM_2155 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_2158 SM00363 S4 RNA-binding domain BPUM_2159 SM00861 Transketolase, pyrimidine binding domain BPUM_2166 SM00878 Biotin carboxylase C-terminal domain BPUM_2175 SM00382 ATPases associated with a variety of cellular activities BPUM_2177 SM00841 Elongation factor P, C-terminal BPUM_2177 SM01185 BPUM_2177 BPUM_2184 SM00529 Helix-turn-helix diphteria tox regulatory element BPUM_2186 SM00450 Rhodanese Homology Domain BPUM_2190 SM00487 DEAD-like helicases superfamily BPUM_2190 SM00490 helicase superfamily c-terminal domain BPUM_2193 SM00530 Helix-turn-helix XRE-family like proteins BPUM_2205 SM00382 ATPases associated with a variety of cellular activities BPUM_2209 SM00849 Metallo-beta-lactamase superfamily BPUM_2213 SM00631 BPUM_2213 BPUM_2217 SM00028 Tetratricopeptide repeats BPUM_2223 SM00382 ATPases associated with a variety of cellular activities BPUM_2224 SM00382 ATPases associated with a variety of cellular activities BPUM_2243 SM00382 ATPases associated with a variety of cellular activities BPUM_2246 SM00518 AP endonuclease family 2 BPUM_2247 SM00487 DEAD-like helicases superfamily BPUM_2247 SM00490 helicase superfamily c-terminal domain BPUM_2254 SM00400 zinc finger BPUM_2254 SM00493 BPUM_2254 BPUM_2257 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_2265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_2269 SM00953 BPUM_2269 BPUM_2276 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_2279 SM00271 DnaJ molecular chaperone homology domain BPUM_2283 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_2284 SM00838 Elongation factor G C-terminus BPUM_2291 SM00849 Metallo-beta-lactamase superfamily BPUM_2293 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BPUM_2297 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_2299 SM01103 BPUM_2299 BPUM_2328 SM01007 Class II Aldolase and Adducin N-terminal domain BPUM_2330 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_2333 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BPUM_2342 SM00382 ATPases associated with a variety of cellular activities BPUM_2343 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_2347 SM00829 Enoylreductase BPUM_2353 SM00382 ATPases associated with a variety of cellular activities BPUM_2378 SM00732 Likely ribonuclease with RNase H fold. BPUM_2380 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BPUM_2382 SM00382 ATPases associated with a variety of cellular activities BPUM_2383 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_2383 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BPUM_2390 SM00028 Tetratricopeptide repeats BPUM_2394 SM00382 ATPases associated with a variety of cellular activities BPUM_2399 SM00287 Bacterial SH3 domain homologues BPUM_2399 SM00646 BPUM_2399 BPUM_2401 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_2401 SM00954 Region found in RelA / SpoT proteins BPUM_2411 SM01323 BPUM_2411 BPUM_2415 SM00382 ATPases associated with a variety of cellular activities BPUM_2416 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BPUM_2424 SM00257 Lysin motif BPUM_2433 SM01317 BPUM_2433 BPUM_2452 SM00257 Lysin motif BPUM_2454 SM01004 Delta-aminolevulinic acid dehydratase BPUM_2461 SM00382 ATPases associated with a variety of cellular activities BPUM_2461 SM00464 Found in ATP-dependent protease La (LON) BPUM_2462 SM00382 ATPases associated with a variety of cellular activities BPUM_2463 SM00382 ATPases associated with a variety of cellular activities BPUM_2463 SM00994 ClpX C4-type zinc finger BPUM_2463 SM01086 C-terminal, D2-small domain, of ClpB protein BPUM_2468 SM01329 BPUM_2468 BPUM_2469 SM00917 LeuA allosteric (dimerisation) domain BPUM_2492 SM00909 Sporulation and spore germination BPUM_2494 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_2495 SM00421 helix_turn_helix, Lux Regulon BPUM_2506 SM00465 GIY-YIG type nucleases (URI domain) BPUM_2508 SM00813 Alpha-L-arabinofuranosidase C-terminus BPUM_2509 SM00893 Electron transfer flavoprotein domain BPUM_2510 SM00893 Electron transfer flavoprotein domain BPUM_2516 SM00463 Small MutS-related domain BPUM_2516 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BPUM_2516 SM00534 ATPase domain of DNA mismatch repair MUTS family BPUM_2517 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BPUM_2517 SM00481 DNA polymerase alpha chain like domain BPUM_2517 SM00483 DNA polymerase X family BPUM_2521 SM00873 B3/4 domain BPUM_2521 SM00874 tRNA synthetase B5 domain BPUM_2521 SM00896 Ferredoxin-fold anticodon binding domain BPUM_2523 SM00967 RNA 2'-O ribose methyltransferase substrate binding BPUM_2535 SM00448 cheY-homologous receiver domain BPUM_2535 SM00850 LytTr DNA-binding domain BPUM_2536 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BPUM_2538 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BPUM_2538 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_2539 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BPUM_2542 SM00382 ATPases associated with a variety of cellular activities BPUM_2547 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BPUM_2550 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BPUM_2550 SM01232 BPUM_2550 BPUM_2551 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BPUM_2551 SM00474 3'-5' exonuclease BPUM_2551 SM00475 5'-3' exonuclease BPUM_2551 SM00482 DNA polymerase A domain BPUM_2552 SM00387 Histidine kinase-like ATPases BPUM_2552 SM00388 His Kinase A (phosphoacceptor) domain BPUM_2553 SM00448 cheY-homologous receiver domain BPUM_2553 SM00862 Transcriptional regulatory protein, C terminal BPUM_2555 SM01329 BPUM_2555 BPUM_2565 SM00919 Malic enzyme, NAD binding domain BPUM_2565 SM01274 BPUM_2565 BPUM_2566 SM00481 DNA polymerase alpha chain like domain BPUM_2572 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_2573 SM00849 Metallo-beta-lactamase superfamily BPUM_2587 SM00487 DEAD-like helicases superfamily BPUM_2587 SM00490 helicase superfamily c-terminal domain BPUM_2590 SM00421 helix_turn_helix, Lux Regulon BPUM_2590 SM00448 cheY-homologous receiver domain BPUM_2592 SM00448 cheY-homologous receiver domain BPUM_2592 SM00862 Transcriptional regulatory protein, C terminal BPUM_2593 SM00387 Histidine kinase-like ATPases BPUM_2594 SM00382 ATPases associated with a variety of cellular activities BPUM_2598 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_2602 SM00981 BPUM_2602 BPUM_2609 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BPUM_2610 SM00363 S4 RNA-binding domain BPUM_2610 SM01390 BPUM_2610 BPUM_2615 SM00363 S4 RNA-binding domain BPUM_2618 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_2620 SM00354 helix_turn _helix lactose operon repressor BPUM_2621 SM00830 Chorismate mutase type II BPUM_2635 SM00919 Malic enzyme, NAD binding domain BPUM_2635 SM01274 BPUM_2635 BPUM_2636 SM00849 Metallo-beta-lactamase superfamily BPUM_2640 SM00046 Diacylglycerol kinase catalytic domain (presumed) BPUM_2647 SM00420 helix_turn_helix, Deoxyribose operon repressor BPUM_2648 SM00363 S4 RNA-binding domain BPUM_2655 SM00450 Rhodanese Homology Domain BPUM_2661 SM00342 helix_turn_helix, arabinose operon control protein BPUM_2671 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BPUM_2671 SM00091 PAS domain BPUM_2674 SM00382 ATPases associated with a variety of cellular activities BPUM_2676 SM00382 ATPases associated with a variety of cellular activities BPUM_2677 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_2680 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_2692 SM00563 Phosphate acyltransferases BPUM_2695 SM00382 ATPases associated with a variety of cellular activities BPUM_2706 SM01234 BPUM_2706 BPUM_2707 SM00947 Carbonic anhydrase BPUM_2714 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BPUM_2728 SM00530 Helix-turn-helix XRE-family like proteins BPUM_2731 SM00244 prohibitin homologues BPUM_2755 SM00257 Lysin motif BPUM_2772 SM00421 helix_turn_helix, Lux Regulon BPUM_2776 SM00530 Helix-turn-helix XRE-family like proteins BPUM_2777 SM00530 Helix-turn-helix XRE-family like proteins BPUM_2779 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_2779 SM00876 Biotin and Thiamin Synthesis associated domain BPUM_2787 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_2787 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_2787 SM00319 Homologues of the ligand binding domain of Tar BPUM_2788 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_2788 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_2789 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_2789 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_2789 SM00319 Homologues of the ligand binding domain of Tar BPUM_2790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_2790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_2790 SM00319 Homologues of the ligand binding domain of Tar BPUM_2796 SM01091 Transporter associated domain BPUM_2806 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_2808 SM00344 helix_turn_helix ASNC type BPUM_2812 SM00387 Histidine kinase-like ATPases BPUM_2812 SM00388 His Kinase A (phosphoacceptor) domain BPUM_2814 SM01298 BPUM_2814 BPUM_2815 SM00479 BPUM_2815 BPUM_2820 SM00387 Histidine kinase-like ATPases BPUM_2821 SM00448 cheY-homologous receiver domain BPUM_2824 SM00382 ATPases associated with a variety of cellular activities BPUM_2837 SM00421 helix_turn_helix, Lux Regulon BPUM_2837 SM00448 cheY-homologous receiver domain BPUM_2838 SM00387 Histidine kinase-like ATPases BPUM_2843 SM00052 Putative diguanylate phosphodiesterase BPUM_2853 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_2862 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BPUM_2862 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BPUM_2896 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_2904 SM00835 Cupin BPUM_2915 SM00388 His Kinase A (phosphoacceptor) domain BPUM_2916 SM00448 cheY-homologous receiver domain BPUM_2916 SM00862 Transcriptional regulatory protein, C terminal BPUM_2927 SM00382 ATPases associated with a variety of cellular activities BPUM_2932 SM00382 ATPases associated with a variety of cellular activities BPUM_2932 SM00930 BPUM_2932 BPUM_2936 SM00493 BPUM_2936 BPUM_2949 SM00382 ATPases associated with a variety of cellular activities BPUM_2952 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_2953 SM00448 cheY-homologous receiver domain BPUM_2953 SM00862 Transcriptional regulatory protein, C terminal BPUM_2954 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_2954 SM00387 Histidine kinase-like ATPases BPUM_2954 SM00388 His Kinase A (phosphoacceptor) domain BPUM_2963 SM00421 helix_turn_helix, Lux Regulon BPUM_2963 SM00448 cheY-homologous receiver domain BPUM_2964 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_2964 SM00387 Histidine kinase-like ATPases BPUM_2978 SM01130 BPUM_2978 BPUM_2979 SM00382 ATPases associated with a variety of cellular activities BPUM_2983 SM00710 Parallel beta-helix repeats BPUM_2984 SM00858 BPUM_2984 BPUM_2986 SM00354 helix_turn _helix lactose operon repressor BPUM_2988 SM00387 Histidine kinase-like ATPases BPUM_2988 SM00388 His Kinase A (phosphoacceptor) domain BPUM_2989 SM00448 cheY-homologous receiver domain BPUM_2989 SM00862 Transcriptional regulatory protein, C terminal BPUM_2990 SM00382 ATPases associated with a variety of cellular activities BPUM_2998 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_3011 SM00382 ATPases associated with a variety of cellular activities BPUM_3016 SM00448 cheY-homologous receiver domain BPUM_3017 SM00387 Histidine kinase-like ATPases BPUM_3026 SM00267 diguanylate cyclase BPUM_3031 SM00316 Ribosomal protein S1-like RNA-binding domain BPUM_3031 SM00357 Cold shock protein domain BPUM_3031 SM00955 BPUM_3031 BPUM_3035 SM00966 SpoVT / AbrB like domain BPUM_3036 SM00530 Helix-turn-helix XRE-family like proteins BPUM_3037 SM00530 Helix-turn-helix XRE-family like proteins BPUM_3038 SM00530 Helix-turn-helix XRE-family like proteins BPUM_3043 SM00116 Domain in cystathionine beta-synthase and other proteins. BPUM_3043 SM00382 ATPases associated with a variety of cellular activities BPUM_3051 SM00382 ATPases associated with a variety of cellular activities BPUM_3053 SM01192 BPUM_3053 BPUM_3053 SM01193 BPUM_3053 BPUM_3057 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BPUM_3061 SM00382 ATPases associated with a variety of cellular activities BPUM_3062 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_3062 SM00895 BPUM_3062 BPUM_3066 SM00382 ATPases associated with a variety of cellular activities BPUM_3067 SM00382 ATPases associated with a variety of cellular activities BPUM_3084 SM00530 Helix-turn-helix XRE-family like proteins BPUM_3091 SM00382 ATPases associated with a variety of cellular activities BPUM_3092 SM00382 ATPases associated with a variety of cellular activities BPUM_3093 SM00382 ATPases associated with a variety of cellular activities BPUM_3106 SM00947 Carbonic anhydrase BPUM_3120 SM00028 Tetratricopeptide repeats BPUM_3140 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_3140 SM00866 BPUM_3140 BPUM_3147 SM00382 ATPases associated with a variety of cellular activities BPUM_3148 SM00487 DEAD-like helicases superfamily BPUM_3148 SM00490 helicase superfamily c-terminal domain BPUM_3155 SM00448 cheY-homologous receiver domain BPUM_3155 SM00862 Transcriptional regulatory protein, C terminal BPUM_3156 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_3156 SM00387 Histidine kinase-like ATPases BPUM_3156 SM00388 His Kinase A (phosphoacceptor) domain BPUM_3163 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_3166 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_3166 SM00245 tail specific protease BPUM_3170 SM00382 ATPases associated with a variety of cellular activities BPUM_3177 SM00937 BPUM_3177 BPUM_3178 SM00957 SecA DEAD-like domain BPUM_3178 SM00958 SecA preprotein cross-linking domain BPUM_3180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_3180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_3196 SM00487 DEAD-like helicases superfamily BPUM_3196 SM00490 helicase superfamily c-terminal domain BPUM_3198 SM00421 helix_turn_helix, Lux Regulon BPUM_3198 SM00448 cheY-homologous receiver domain BPUM_3199 SM00387 Histidine kinase-like ATPases BPUM_3208 SM00984 UDP binding domain BPUM_3214 SM00646 BPUM_3214 BPUM_3220 SM00382 ATPases associated with a variety of cellular activities BPUM_3233 SM00047 Lysozyme subfamily 2 BPUM_3233 SM00287 Bacterial SH3 domain homologues BPUM_3239 SM00342 helix_turn_helix, arabinose operon control protein BPUM_3239 SM00448 cheY-homologous receiver domain BPUM_3240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_3240 SM00387 Histidine kinase-like ATPases BPUM_3245 SM00354 helix_turn _helix lactose operon repressor BPUM_3257 SM00854 Bacterial capsule synthesis protein PGA_cap BPUM_3263 SM00354 helix_turn _helix lactose operon repressor BPUM_3266 SM00382 ATPases associated with a variety of cellular activities BPUM_3269 SM00903 Flavin reductase like domain BPUM_3273 SM00344 helix_turn_helix ASNC type BPUM_3276 SM00984 UDP binding domain BPUM_3279 SM00487 DEAD-like helicases superfamily BPUM_3279 SM00490 helicase superfamily c-terminal domain BPUM_3280 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BPUM_3280 SM00091 PAS domain BPUM_3287 SM00028 Tetratricopeptide repeats BPUM_3292 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_3294 SM00014 Acid phosphatase homologues BPUM_3296 SM00062 Bacterial periplasmic substrate-binding proteins BPUM_3298 SM00382 ATPases associated with a variety of cellular activities BPUM_3301 SM00938 Nitrogen regulatory protein P-II BPUM_3306 SM00382 ATPases associated with a variety of cellular activities BPUM_3311 SM00833 Cobalamin synthesis protein cobW C-terminal domain BPUM_3314 SM00729 Elongator protein 3, MiaB family, Radical SAM BPUM_3318 SM00327 von Willebrand factor (vWF) type A domain BPUM_3319 SM00327 von Willebrand factor (vWF) type A domain BPUM_3326 SM00382 ATPases associated with a variety of cellular activities BPUM_3338 SM00226 Low molecular weight phosphatase family BPUM_3345 SM00937 BPUM_3345 BPUM_3348 SM00919 Malic enzyme, NAD binding domain BPUM_3348 SM01274 BPUM_3348 BPUM_3358 SM00448 cheY-homologous receiver domain BPUM_3363 SM00382 ATPases associated with a variety of cellular activities BPUM_3375 SM00155 Phospholipase D. Active site motifs. BPUM_3379 SM00382 ATPases associated with a variety of cellular activities BPUM_3380 SM00155 Phospholipase D. Active site motifs. BPUM_3383 SM00836 DALR anticodon binding domain BPUM_3383 SM01016 Arginyl tRNA synthetase N terminal dom BPUM_3394 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BPUM_3399 SM00028 Tetratricopeptide repeats BPUM_3401 SM00860 SMI1 / KNR4 family BPUM_3418 SM00344 helix_turn_helix ASNC type BPUM_3432 SM00858 BPUM_3432 BPUM_3439 SM00835 Cupin BPUM_3444 SM00986 Uracil DNA glycosylase superfamily BPUM_3444 SM00987 UreE urease accessory protein, C-terminal domain BPUM_3451 SM00640 Glycosyl hydrolases family 32 BPUM_3453 SM01061 CAT RNA binding domain BPUM_3469 SM00342 helix_turn_helix, arabinose operon control protein BPUM_3475 SM00028 Tetratricopeptide repeats BPUM_3488 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BPUM_3490 SM00382 ATPases associated with a variety of cellular activities BPUM_3495 SM00954 Region found in RelA / SpoT proteins BPUM_3497 SM00382 ATPases associated with a variety of cellular activities BPUM_3499 SM00710 Parallel beta-helix repeats BPUM_3511 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BPUM_3515 SM00656 BPUM_3515 BPUM_3516 SM00382 ATPases associated with a variety of cellular activities BPUM_3517 SM00382 ATPases associated with a variety of cellular activities BPUM_3520 SM00382 ATPases associated with a variety of cellular activities BPUM_3524 SM00382 ATPases associated with a variety of cellular activities BPUM_3527 SM00725 NEAr Transporter domain BPUM_3528 SM00725 NEAr Transporter domain BPUM_3548 SM00870 BPUM_3548 BPUM_3549 SM00530 Helix-turn-helix XRE-family like proteins BPUM_3550 SM00530 Helix-turn-helix XRE-family like proteins BPUM_3564 SM00382 ATPases associated with a variety of cellular activities BPUM_3567 SM01061 CAT RNA binding domain BPUM_3570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_3572 SM00382 ATPases associated with a variety of cellular activities BPUM_3583 SM00347 helix_turn_helix multiple antibiotic resistance protein BPUM_3583 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BPUM_3585 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BPUM_3587 SM01133 BPUM_3587 BPUM_3594 SM00421 helix_turn_helix, Lux Regulon BPUM_3596 SM00422 helix_turn_helix, mercury resistance BPUM_3598 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BPUM_3598 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BPUM_3612 SM00354 helix_turn _helix lactose operon repressor BPUM_3621 SM00382 ATPases associated with a variety of cellular activities BPUM_3623 SM00382 ATPases associated with a variety of cellular activities BPUM_3624 SM00850 LytTr DNA-binding domain BPUM_3636 SM00382 ATPases associated with a variety of cellular activities BPUM_3641 SM00028 Tetratricopeptide repeats BPUM_3642 SM01061 CAT RNA binding domain BPUM_3650 SM00530 Helix-turn-helix XRE-family like proteins BPUM_3653 SM00354 helix_turn _helix lactose operon repressor BPUM_3663 SM00345 helix_turn_helix gluconate operon transcriptional repressor BPUM_3663 SM00866 BPUM_3663 BPUM_3673 SM00849 Metallo-beta-lactamase superfamily BPUM_3674 SM00487 DEAD-like helicases superfamily BPUM_3674 SM00490 helicase superfamily c-terminal domain BPUM_3678 SM00382 ATPases associated with a variety of cellular activities BPUM_3682 SM00382 ATPases associated with a variety of cellular activities BPUM_3684 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BPUM_3685 SM00849 Metallo-beta-lactamase superfamily BPUM_3688 SM00091 PAS domain BPUM_3688 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BPUM_3688 SM00387 Histidine kinase-like ATPases BPUM_3688 SM00388 His Kinase A (phosphoacceptor) domain BPUM_3689 SM00448 cheY-homologous receiver domain BPUM_3689 SM00862 Transcriptional regulatory protein, C terminal BPUM_3693 SM00788 Adenylosuccinate synthetase BPUM_3697 SM00382 ATPases associated with a variety of cellular activities BPUM_3700 SM00342 helix_turn_helix, arabinose operon control protein BPUM_3706 SM00267 diguanylate cyclase BPUM_3708 SM01131 BPUM_3708 BPUM_3712 SM01060 BPUM_3712 BPUM_3717 SM00382 ATPases associated with a variety of cellular activities BPUM_3727 SM00470 ParB-like nuclease domain BPUM_3730 SM00470 ParB-like nuclease domain BPUM_3732 SM01228 BPUM_3732 BPUM_3734 SM00393 Putative single-stranded nucleic acids-binding domain BPUM_3734 SM01245 BPUM_3734