UP15_00005 SM00382 ATPases associated with a variety of cellular activities UP15_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain UP15_00010 SM00480 DNA polymerase III beta subunit UP15_00030 SM00387 Histidine kinase-like ATPases UP15_00030 SM00433 TopoisomeraseII UP15_00035 SM00434 DNA Topoisomerase IV UP15_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_00070 SM01240 UP15_00070 UP15_00075 SM00936 Penicillin-binding protein 5, C-terminal domain UP15_00085 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_00105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_00130 SM00257 Lysin motif UP15_00130 SM00636 UP15_00130 UP15_00145 SM00382 ATPases associated with a variety of cellular activities UP15_00155 SM00493 UP15_00155 UP15_00250 SM00465 GIY-YIG type nucleases (URI domain) UP15_00260 SM00966 SpoVT / AbrB like domain UP15_00275 SM01208 UP15_00275 UP15_00280 SM00493 UP15_00280 UP15_00285 SM00650 Ribosomal RNA adenine dimethylases UP15_00330 SM01400 UP15_00330 UP15_00350 SM00487 DEAD-like helicases superfamily UP15_00350 SM00490 helicase superfamily c-terminal domain UP15_00350 SM00982 UP15_00350 UP15_00350 SM01058 CarD-like/TRCF domain UP15_00355 SM00966 SpoVT / AbrB like domain UP15_00370 SM00363 S4 RNA-binding domain UP15_00390 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_00405 SM00331 Sigma factor PP2C-like phosphatases UP15_00405 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP15_00415 SM00220 Serine/Threonine protein kinases, catalytic domain UP15_00420 SM00977 TilS substrate C-terminal domain UP15_00430 SM00382 ATPases associated with a variety of cellular activities UP15_00475 SM00905 Dihydroneopterin aldolase UP15_00485 SM00530 Helix-turn-helix XRE-family like proteins UP15_00590 SM00382 ATPases associated with a variety of cellular activities UP15_00590 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_00595 SM00382 ATPases associated with a variety of cellular activities UP15_00605 SM00670 Large family of predicted nucleotide-binding domains UP15_00630 SM00840 UP15_00630 UP15_00635 SM00535 Ribonuclease III family UP15_00640 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP15_00660 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. UP15_00660 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP15_00665 SM00649 Ribosomal protein L11/L12 UP15_00695 SM00663 RNA polymerase I subunit A N-terminus UP15_00715 SM00838 Elongation factor G C-terminus UP15_00715 SM00889 Elongation factor G, domain IV UP15_00730 SM01403 UP15_00730 UP15_00750 SM01382 UP15_00750 UP15_00750 SM01383 UP15_00750 UP15_00765 SM00322 K homology RNA-binding domain UP15_00785 SM01374 UP15_00785 UP15_00790 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP15_00850 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_00870 SM00662 RNA polymerases D UP15_00880 SM00382 ATPases associated with a variety of cellular activities UP15_00885 SM00382 ATPases associated with a variety of cellular activities UP15_00935 SM00646 UP15_00935 UP15_00950 SM01251 UP15_00950 UP15_01095 SM00382 ATPases associated with a variety of cellular activities UP15_01105 SM00382 ATPases associated with a variety of cellular activities UP15_01140 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_01145 SM00382 ATPases associated with a variety of cellular activities UP15_01155 SM00530 Helix-turn-helix XRE-family like proteins UP15_01170 SM00342 helix_turn_helix, arabinose operon control protein UP15_01220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_01235 SM00825 Beta-ketoacyl synthase UP15_01240 SM00530 Helix-turn-helix XRE-family like proteins UP15_01255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_01280 SM00450 Rhodanese Homology Domain UP15_01285 SM00450 Rhodanese Homology Domain UP15_01290 SM00450 Rhodanese Homology Domain UP15_01290 SM00849 Metallo-beta-lactamase superfamily UP15_01305 SM00946 Prolyl-tRNA synthetase, C-terminal UP15_01325 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_01355 SM00450 Rhodanese Homology Domain UP15_01370 SM01061 CAT RNA binding domain UP15_01405 SM00872 Alpha mannosidase, middle domain UP15_01510 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_01545 SM00387 Histidine kinase-like ATPases UP15_01550 SM00448 cheY-homologous receiver domain UP15_01575 SM00387 Histidine kinase-like ATPases UP15_01580 SM00448 cheY-homologous receiver domain UP15_01580 SM00850 LytTr DNA-binding domain UP15_01585 SM00382 ATPases associated with a variety of cellular activities UP15_01680 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_01680 SM00382 ATPases associated with a variety of cellular activities UP15_01725 SM00354 helix_turn _helix lactose operon repressor UP15_01825 SM00346 helix_turn_helix isocitrate lyase regulation UP15_01835 SM01130 UP15_01835 UP15_01840 SM00354 helix_turn _helix lactose operon repressor UP15_01905 SM00062 Bacterial periplasmic substrate-binding proteins UP15_01920 SM00344 helix_turn_helix ASNC type UP15_01935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_01935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_01965 SM00382 ATPases associated with a variety of cellular activities UP15_01980 SM00823 Phosphopantetheine attachment site UP15_01985 SM00823 Phosphopantetheine attachment site UP15_01995 SM00822 UP15_01995 UP15_01995 SM00823 Phosphopantetheine attachment site UP15_02000 SM00822 UP15_02000 UP15_02000 SM00823 Phosphopantetheine attachment site UP15_02005 SM00824 Thioesterase UP15_02015 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_02050 SM00382 ATPases associated with a variety of cellular activities UP15_02060 SM00062 Bacterial periplasmic substrate-binding proteins UP15_02080 SM00710 Parallel beta-helix repeats UP15_02095 SM00062 Bacterial periplasmic substrate-binding proteins UP15_02095 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_02105 SM00382 ATPases associated with a variety of cellular activities UP15_02125 SM00448 cheY-homologous receiver domain UP15_02125 SM00862 Transcriptional regulatory protein, C terminal UP15_02130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_02130 SM00387 Histidine kinase-like ATPases UP15_02130 SM00388 His Kinase A (phosphoacceptor) domain UP15_02135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_02160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_02175 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_02225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_02225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_02225 SM01049 UP15_02225 UP15_02240 SM00900 UP15_02240 UP15_02265 SM00894 Excalibur calcium-binding domain UP15_02315 SM00796 Allophanate hydrolase subunit 1 UP15_02320 SM00797 Allophanate hydrolase subunit 2 UP15_02325 SM00346 helix_turn_helix isocitrate lyase regulation UP15_02385 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_02385 SM00895 UP15_02385 UP15_02390 SM00342 helix_turn_helix, arabinose operon control protein UP15_02400 SM01329 UP15_02400 UP15_02405 SM00493 UP15_02405 UP15_02425 SM00267 diguanylate cyclase UP15_02505 SM00091 PAS domain UP15_02505 SM00387 Histidine kinase-like ATPases UP15_02510 SM00448 cheY-homologous receiver domain UP15_02530 SM00382 ATPases associated with a variety of cellular activities UP15_02570 SM00487 DEAD-like helicases superfamily UP15_02570 SM00490 helicase superfamily c-terminal domain UP15_02600 SM01005 Alanine racemase, C-terminal domain UP15_02630 SM00331 Sigma factor PP2C-like phosphatases UP15_02650 SM00331 Sigma factor PP2C-like phosphatases UP15_02650 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP15_02655 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_02655 SM00732 Likely ribonuclease with RNase H fold. UP15_02660 SM00731 SprT homologues. UP15_02670 SM00861 Transketolase, pyrimidine binding domain UP15_02685 SM00382 ATPases associated with a variety of cellular activities UP15_02745 SM00357 Cold shock protein domain UP15_02750 SM01058 CarD-like/TRCF domain UP15_02755 SM00829 Enoylreductase UP15_02760 SM00422 helix_turn_helix, mercury resistance UP15_02805 SM00870 UP15_02805 UP15_02825 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_02855 SM00387 Histidine kinase-like ATPases UP15_02860 SM00421 helix_turn_helix, Lux Regulon UP15_02860 SM00448 cheY-homologous receiver domain UP15_02870 SM00850 LytTr DNA-binding domain UP15_02915 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_02935 SM00530 Helix-turn-helix XRE-family like proteins UP15_03045 SM00382 ATPases associated with a variety of cellular activities UP15_03055 SM00881 CoA binding domain UP15_03085 SM00883 Chaperonin 10 Kd subunit UP15_03095 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_03175 SM00460 Transglutaminase/protease-like homologues UP15_03235 SM00342 helix_turn_helix, arabinose operon control protein UP15_03240 SM00917 LeuA allosteric (dimerisation) domain UP15_03330 SM01001 AIR carboxylase UP15_03340 SM00998 Adenylosuccinate lyase C-terminus UP15_03355 SM01211 UP15_03355 UP15_03380 SM00798 AICARFT/IMPCHase bienzyme UP15_03380 SM00851 MGS-like domain UP15_03385 SM01209 UP15_03385 UP15_03385 SM01210 UP15_03385 UP15_03410 SM00882 Coenzyme A transferase UP15_03415 SM00882 Coenzyme A transferase UP15_03440 SM00530 Helix-turn-helix XRE-family like proteins UP15_03470 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_03470 SM00292 breast cancer carboxy-terminal domain UP15_03470 SM00532 Ligase N family UP15_03525 SM00822 UP15_03525 UP15_03525 SM00823 Phosphopantetheine attachment site UP15_03525 SM00825 Beta-ketoacyl synthase UP15_03525 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_03525 SM01294 UP15_03525 UP15_03530 SM00823 Phosphopantetheine attachment site UP15_03530 SM01294 UP15_03530 UP15_03535 SM00822 UP15_03535 UP15_03535 SM00823 Phosphopantetheine attachment site UP15_03535 SM00825 Beta-ketoacyl synthase UP15_03535 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_03540 SM00822 UP15_03540 UP15_03540 SM00823 Phosphopantetheine attachment site UP15_03540 SM00825 Beta-ketoacyl synthase UP15_03540 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_03545 SM00823 Phosphopantetheine attachment site UP15_03545 SM00825 Beta-ketoacyl synthase UP15_03545 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_03555 SM00098 Alkaline phosphatase homologues UP15_03580 SM00845 GatB domain UP15_03600 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP15_03625 SM00860 SMI1 / KNR4 family UP15_03765 SM00382 ATPases associated with a variety of cellular activities UP15_03780 SM00422 helix_turn_helix, mercury resistance UP15_03790 SM00382 ATPases associated with a variety of cellular activities UP15_03795 SM00487 DEAD-like helicases superfamily UP15_03795 SM00490 helicase superfamily c-terminal domain UP15_03800 SM00829 Enoylreductase UP15_03830 SM00320 WD40 repeats UP15_03860 SM00387 Histidine kinase-like ATPases UP15_03865 SM00448 cheY-homologous receiver domain UP15_03880 SM00631 UP15_03880 UP15_03950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_03950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_03965 SM00642 Alpha-amylase domain UP15_03970 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_03970 SM00866 UP15_03970 UP15_04000 SM00226 Low molecular weight phosphatase family UP15_04080 SM00478 endonuclease III UP15_04115 SM00422 helix_turn_helix, mercury resistance UP15_04115 SM00871 Bacterial transcription activator, effector binding domain UP15_04205 SM00342 helix_turn_helix, arabinose operon control protein UP15_04215 SM00382 ATPases associated with a variety of cellular activities UP15_04240 SM00829 Enoylreductase UP15_04255 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_04275 SM00530 Helix-turn-helix XRE-family like proteins UP15_04340 SM00835 Cupin UP15_04360 SM00478 endonuclease III UP15_04390 SM00382 ATPases associated with a variety of cellular activities UP15_04395 SM00382 ATPases associated with a variety of cellular activities UP15_04400 SM00382 ATPases associated with a variety of cellular activities UP15_04560 SM00855 Phosphoglycerate mutase family UP15_04610 SM00382 ATPases associated with a variety of cellular activities UP15_04615 SM00062 Bacterial periplasmic substrate-binding proteins UP15_04635 SM00382 ATPases associated with a variety of cellular activities UP15_04670 SM00567 E-Z type HEAT repeats UP15_04685 SM00763 PrkA AAA domain UP15_04715 SM00357 Cold shock protein domain UP15_04750 SM00138 Methyltransferase, chemotaxis proteins UP15_04750 SM00387 Histidine kinase-like ATPases UP15_04750 SM00388 His Kinase A (phosphoacceptor) domain UP15_04755 SM00318 Staphylococcal nuclease homologues UP15_04835 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_04840 SM00421 helix_turn_helix, Lux Regulon UP15_04840 SM00448 cheY-homologous receiver domain UP15_04855 SM01060 UP15_04855 UP15_04875 SM00098 Alkaline phosphatase homologues UP15_04880 SM00257 Lysin motif UP15_04900 SM00563 Phosphate acyltransferases UP15_04905 SM01091 Transporter associated domain UP15_04915 SM01091 Transporter associated domain UP15_04965 SM00382 ATPases associated with a variety of cellular activities UP15_04970 SM00382 ATPases associated with a variety of cellular activities UP15_04990 SM00382 ATPases associated with a variety of cellular activities UP15_05030 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_05075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_05110 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_05140 SM00382 ATPases associated with a variety of cellular activities UP15_05215 SM00849 Metallo-beta-lactamase superfamily UP15_05245 SM00855 Phosphoglycerate mutase family UP15_05250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_05265 SM00914 UP15_05265 UP15_05275 SM01119 UP15_05275 UP15_05285 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_05310 SM00382 ATPases associated with a variety of cellular activities UP15_05480 SM00342 helix_turn_helix, arabinose operon control protein UP15_05515 SM01006 Siderophore biosynthesis protein domain UP15_05540 SM01018 B12 binding domain UP15_05555 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_05565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_05565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_05620 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP15_05640 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP15_05645 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP15_05700 SM00825 Beta-ketoacyl synthase UP15_05710 SM00382 ATPases associated with a variety of cellular activities UP15_05715 SM00382 ATPases associated with a variety of cellular activities UP15_05765 SM00382 ATPases associated with a variety of cellular activities UP15_05770 SM00382 ATPases associated with a variety of cellular activities UP15_05800 SM00155 Phospholipase D. Active site motifs. UP15_05835 SM01118 UP15_05835 UP15_05845 SM00954 Region found in RelA / SpoT proteins UP15_06040 SM01059 Chloramphenicol acetyltransferase UP15_06060 SM00860 SMI1 / KNR4 family UP15_06130 SM01005 Alanine racemase, C-terminal domain UP15_06135 SM00829 Enoylreductase UP15_06145 SM00612 UP15_06145 UP15_06165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_06185 SM00257 Lysin motif UP15_06185 SM00644 UP15_06185 UP15_06210 SM01022 UP15_06210 UP15_06260 SM00829 Enoylreductase UP15_06270 SM00861 Transketolase, pyrimidine binding domain UP15_06275 SM01059 Chloramphenicol acetyltransferase UP15_06315 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_06340 SM00382 ATPases associated with a variety of cellular activities UP15_06355 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP15_06365 SM00382 ATPases associated with a variety of cellular activities UP15_06400 SM00342 helix_turn_helix, arabinose operon control protein UP15_06425 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP15_06435 SM00028 Tetratricopeptide repeats UP15_06450 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_06480 SM00530 Helix-turn-helix XRE-family like proteins UP15_06485 SM00448 cheY-homologous receiver domain UP15_06485 SM00862 Transcriptional regulatory protein, C terminal UP15_06490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_06490 SM00387 Histidine kinase-like ATPases UP15_06490 SM00388 His Kinase A (phosphoacceptor) domain UP15_06525 SM00422 helix_turn_helix, mercury resistance UP15_06535 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_06540 SM00052 Putative diguanylate phosphodiesterase UP15_06540 SM00267 diguanylate cyclase UP15_06600 SM00091 PAS domain UP15_06600 SM00387 Histidine kinase-like ATPases UP15_06600 SM00388 His Kinase A (phosphoacceptor) domain UP15_06635 SM01007 Class II Aldolase and Adducin N-terminal domain UP15_06650 SM00387 Histidine kinase-like ATPases UP15_06650 SM00388 His Kinase A (phosphoacceptor) domain UP15_06655 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_06670 SM00382 ATPases associated with a variety of cellular activities UP15_06670 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_06740 SM00354 helix_turn _helix lactose operon repressor UP15_06745 SM01061 CAT RNA binding domain UP15_06775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_06775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_06800 SM00091 PAS domain UP15_06800 SM00387 Histidine kinase-like ATPases UP15_06800 SM00388 His Kinase A (phosphoacceptor) domain UP15_06825 SM00260 Two component signalling adaptor domain UP15_06825 SM00448 cheY-homologous receiver domain UP15_06845 SM00530 Helix-turn-helix XRE-family like proteins UP15_06850 SM00530 Helix-turn-helix XRE-family like proteins UP15_06895 SM00382 ATPases associated with a variety of cellular activities UP15_07020 SM00710 Parallel beta-helix repeats UP15_07050 SM00644 UP15_07050 UP15_07060 SM00028 Tetratricopeptide repeats UP15_07085 SM00257 Lysin motif UP15_07100 SM00052 Putative diguanylate phosphodiesterase UP15_07205 SM00852 Probable molybdopterin binding domain UP15_07240 SM00382 ATPases associated with a variety of cellular activities UP15_07250 SM00420 helix_turn_helix, Deoxyribose operon repressor UP15_07250 SM01134 UP15_07250 UP15_07275 SM00382 ATPases associated with a variety of cellular activities UP15_07290 SM00966 SpoVT / AbrB like domain UP15_07295 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_07295 SM00091 PAS domain UP15_07295 SM00387 Histidine kinase-like ATPases UP15_07295 SM00388 His Kinase A (phosphoacceptor) domain UP15_07315 SM00849 Metallo-beta-lactamase superfamily UP15_07350 SM00861 Transketolase, pyrimidine binding domain UP15_07425 SM00838 Elongation factor G C-terminus UP15_07450 SM00670 Large family of predicted nucleotide-binding domains UP15_07475 SM00878 Biotin carboxylase C-terminal domain UP15_07525 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_07580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_07600 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains UP15_07635 SM00740 UP15_07635 UP15_07640 SM00740 UP15_07640 UP15_07695 SM00842 Cell division protein FtsA UP15_07700 SM00864 Tubulin/FtsZ family, GTPase domain UP15_07700 SM00865 Tubulin/FtsZ family, C-terminal domain UP15_07730 SM00858 UP15_07730 UP15_07755 SM00382 ATPases associated with a variety of cellular activities UP15_07785 SM00363 S4 RNA-binding domain UP15_07810 SM00363 S4 RNA-binding domain UP15_07835 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP15_07840 SM00851 MGS-like domain UP15_07840 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP15_07840 SM01209 UP15_07840 UP15_07855 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP15_07905 SM00831 Cation transporter/ATPase, N-terminus UP15_07920 SM00072 Guanylate kinase homologues. UP15_07925 SM01409 UP15_07925 UP15_07935 SM00487 DEAD-like helicases superfamily UP15_07935 SM00490 helicase superfamily c-terminal domain UP15_07960 SM00331 Sigma factor PP2C-like phosphatases UP15_07960 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP15_07965 SM00220 Serine/Threonine protein kinases, catalytic domain UP15_07965 SM00740 UP15_07965 UP15_07980 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain UP15_08000 SM01120 UP15_08000 UP15_08000 SM01121 UP15_08000 UP15_08015 SM00487 DEAD-like helicases superfamily UP15_08015 SM00490 helicase superfamily c-terminal domain UP15_08030 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP15_08035 SM00822 UP15_08035 UP15_08045 SM00358 Double-stranded RNA binding motif UP15_08045 SM00535 Ribonuclease III family UP15_08050 SM00968 SMC proteins Flexible Hinge Domain UP15_08055 SM00382 ATPases associated with a variety of cellular activities UP15_08055 SM00962 SRP54-type protein, GTPase domain UP15_08055 SM00963 SRP54-type protein, helical bundle domain UP15_08065 SM00382 ATPases associated with a variety of cellular activities UP15_08065 SM00962 SRP54-type protein, GTPase domain UP15_08065 SM00963 SRP54-type protein, helical bundle domain UP15_08125 SM00881 CoA binding domain UP15_08135 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain UP15_08135 SM00437 Bacterial DNA topoisomerase I DNA-binding domain UP15_08135 SM00493 UP15_08135 UP15_08155 SM00382 ATPases associated with a variety of cellular activities UP15_08155 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_08195 SM00382 ATPases associated with a variety of cellular activities UP15_08245 SM00448 cheY-homologous receiver domain UP15_08280 SM00962 SRP54-type protein, GTPase domain UP15_08290 SM00448 cheY-homologous receiver domain UP15_08295 SM00073 Histidine Phosphotransfer domain UP15_08295 SM00260 Two component signalling adaptor domain UP15_08295 SM00387 Histidine kinase-like ATPases UP15_08295 SM01231 UP15_08295 UP15_08300 SM00260 Two component signalling adaptor domain UP15_08360 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_08370 SM00479 UP15_08370 UP15_08370 SM00481 DNA polymerase alpha chain like domain UP15_08375 SM01067 Cellulose binding domain UP15_08385 SM00633 Glycosyl hydrolase family 10 UP15_08400 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_08400 SM00322 K homology RNA-binding domain UP15_08435 SM00904 Riboflavin kinase UP15_08440 SM01387 UP15_08440 UP15_08445 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_08445 SM00322 K homology RNA-binding domain UP15_08480 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP15_08490 SM01130 UP15_08490 UP15_08495 SM00849 Metallo-beta-lactamase superfamily UP15_08510 SM00382 ATPases associated with a variety of cellular activities UP15_08510 SM00843 UP15_08510 UP15_08515 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_08515 SM00866 UP15_08515 UP15_08540 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_08575 SM00852 Probable molybdopterin binding domain UP15_08580 SM00382 ATPases associated with a variety of cellular activities UP15_08585 SM00322 K homology RNA-binding domain UP15_08585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_08605 SM00829 Enoylreductase UP15_08620 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_08635 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP15_08635 SM00534 ATPase domain of DNA mismatch repair MUTS family UP15_08640 SM00853 MutL C terminal dimerisation domain UP15_08640 SM01340 UP15_08640 UP15_08665 SM01058 CarD-like/TRCF domain UP15_08680 SM00028 Tetratricopeptide repeats UP15_08765 SM00646 UP15_08765 UP15_08770 SM00382 ATPases associated with a variety of cellular activities UP15_08785 SM00422 helix_turn_helix, mercury resistance UP15_08790 SM01230 UP15_08790 UP15_08805 SM00860 SMI1 / KNR4 family UP15_08825 SM00506 Appr-1"-p processing enzyme UP15_08870 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen UP15_08945 SM00020 Trypsin-like serine protease UP15_08980 SM00257 Lysin motif UP15_08985 SM00857 Resolvase, N terminal domain UP15_08995 SM00861 Transketolase, pyrimidine binding domain UP15_09080 SM01207 UP15_09080 UP15_09085 SM00881 CoA binding domain UP15_09090 SM00387 Histidine kinase-like ATPases UP15_09090 SM00433 TopoisomeraseII UP15_09095 SM00434 DNA Topoisomerase IV UP15_09110 SM01329 UP15_09110 UP15_09115 SM01266 UP15_09115 UP15_09120 SM00226 Low molecular weight phosphatase family UP15_09130 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_09220 SM00422 helix_turn_helix, mercury resistance UP15_09230 SM00387 Histidine kinase-like ATPases UP15_09230 SM00388 His Kinase A (phosphoacceptor) domain UP15_09235 SM00448 cheY-homologous receiver domain UP15_09235 SM00862 Transcriptional regulatory protein, C terminal UP15_09245 SM00606 Cellulose Binding Domain Type IV UP15_09275 SM00354 helix_turn _helix lactose operon repressor UP15_09330 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_09365 SM00155 Phospholipase D. Active site motifs. UP15_09375 SM00100 Cyclic nucleotide-monophosphate binding domain UP15_09435 SM00878 Biotin carboxylase C-terminal domain UP15_09460 SM00420 helix_turn_helix, Deoxyribose operon repressor UP15_09460 SM01134 UP15_09460 UP15_09575 SM00926 Molybdopterin oxidoreductase Fe4S4 domain UP15_09605 SM00382 ATPases associated with a variety of cellular activities UP15_09610 SM00382 ATPases associated with a variety of cellular activities UP15_09615 SM00422 helix_turn_helix, mercury resistance UP15_09630 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP15_09645 SM00926 Molybdopterin oxidoreductase Fe4S4 domain UP15_09710 SM00849 Metallo-beta-lactamase superfamily UP15_09715 SM00871 Bacterial transcription activator, effector binding domain UP15_09730 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_09770 SM00257 Lysin motif UP15_09775 SM00341 Helicase and RNase D C-terminal UP15_09775 SM00487 DEAD-like helicases superfamily UP15_09775 SM00490 helicase superfamily c-terminal domain UP15_09775 SM00956 UP15_09775 UP15_09830 SM00861 Transketolase, pyrimidine binding domain UP15_09835 SM00327 von Willebrand factor (vWF) type A domain UP15_09840 SM00382 ATPases associated with a variety of cellular activities UP15_09850 SM00257 Lysin motif UP15_09915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_09915 SM00245 tail specific protease UP15_09945 SM00014 Acid phosphatase homologues UP15_09970 SM00091 PAS domain UP15_09970 SM00382 ATPases associated with a variety of cellular activities UP15_10015 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_10120 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_10155 SM00357 Cold shock protein domain UP15_10190 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP15_10190 SM00475 5'-3' exonuclease UP15_10245 SM00491 UP15_10245 UP15_10255 SM00981 UP15_10255 UP15_10275 SM00487 DEAD-like helicases superfamily UP15_10275 SM00490 helicase superfamily c-terminal domain UP15_10335 SM00478 endonuclease III UP15_10335 SM00525 UP15_10335 UP15_10355 SM00479 UP15_10355 UP15_10355 SM00491 UP15_10355 UP15_10395 SM00851 MGS-like domain UP15_10445 SM00914 UP15_10445 UP15_10450 SM00028 Tetratricopeptide repeats UP15_10515 SM00138 Methyltransferase, chemotaxis proteins UP15_10520 SM00562 UP15_10520 UP15_10550 SM00411 bacterial (prokaryotic) histone like domain UP15_10595 SM01240 UP15_10595 UP15_10600 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_10640 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP15_10660 SM00257 Lysin motif UP15_10670 SM00487 DEAD-like helicases superfamily UP15_10670 SM00490 helicase superfamily c-terminal domain UP15_10695 SM00257 Lysin motif UP15_10710 SM00091 PAS domain UP15_10710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_10710 SM00387 Histidine kinase-like ATPases UP15_10710 SM00388 His Kinase A (phosphoacceptor) domain UP15_10715 SM00448 cheY-homologous receiver domain UP15_10715 SM00862 Transcriptional regulatory protein, C terminal UP15_10735 SM00363 S4 RNA-binding domain UP15_10870 SM00387 Histidine kinase-like ATPases UP15_10880 SM00936 Penicillin-binding protein 5, C-terminal domain UP15_10955 SM00028 Tetratricopeptide repeats UP15_11025 SM00849 Metallo-beta-lactamase superfamily UP15_11045 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_11080 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_11080 SM00866 UP15_11080 UP15_11120 SM01350 UP15_11120 UP15_11140 SM00260 Two component signalling adaptor domain UP15_11170 SM00382 ATPases associated with a variety of cellular activities UP15_11180 SM00062 Bacterial periplasmic substrate-binding proteins UP15_11180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_11190 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP15_11205 SM00861 Transketolase, pyrimidine binding domain UP15_11225 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP15_11235 SM00091 PAS domain UP15_11235 SM00382 ATPases associated with a variety of cellular activities UP15_11255 SM00448 cheY-homologous receiver domain UP15_11260 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_11275 SM00363 S4 RNA-binding domain UP15_11280 SM00861 Transketolase, pyrimidine binding domain UP15_11315 SM00878 Biotin carboxylase C-terminal domain UP15_11360 SM00382 ATPases associated with a variety of cellular activities UP15_11370 SM00841 Elongation factor P, C-terminal UP15_11370 SM01185 UP15_11370 UP15_11405 SM00529 Helix-turn-helix diphteria tox regulatory element UP15_11415 SM00450 Rhodanese Homology Domain UP15_11435 SM00487 DEAD-like helicases superfamily UP15_11435 SM00490 helicase superfamily c-terminal domain UP15_11445 SM00530 Helix-turn-helix XRE-family like proteins UP15_11505 SM00382 ATPases associated with a variety of cellular activities UP15_11530 SM00849 Metallo-beta-lactamase superfamily UP15_11550 SM00631 UP15_11550 UP15_11570 SM00028 Tetratricopeptide repeats UP15_11605 SM00382 ATPases associated with a variety of cellular activities UP15_11610 SM00382 ATPases associated with a variety of cellular activities UP15_11695 SM00382 ATPases associated with a variety of cellular activities UP15_11710 SM00518 AP endonuclease family 2 UP15_11715 SM00487 DEAD-like helicases superfamily UP15_11715 SM00490 helicase superfamily c-terminal domain UP15_11750 SM00400 zinc finger UP15_11750 SM00493 UP15_11750 UP15_11765 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_11805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_11825 SM00953 UP15_11825 UP15_11860 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_11875 SM00271 DnaJ molecular chaperone homology domain UP15_11895 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_11900 SM00838 Elongation factor G C-terminus UP15_11935 SM00849 Metallo-beta-lactamase superfamily UP15_11945 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_11965 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_11975 SM01103 UP15_11975 UP15_12010 SM00028 Tetratricopeptide repeats UP15_12020 SM00857 Resolvase, N terminal domain UP15_12035 SM00860 SMI1 / KNR4 family UP15_12060 SM00644 UP15_12060 UP15_12120 SM00257 Lysin motif UP15_12215 SM00470 ParB-like nuclease domain UP15_12325 SM00530 Helix-turn-helix XRE-family like proteins UP15_12330 SM00530 Helix-turn-helix XRE-family like proteins UP15_12335 SM00530 Helix-turn-helix XRE-family like proteins UP15_12420 SM00382 ATPases associated with a variety of cellular activities UP15_12450 SM01007 Class II Aldolase and Adducin N-terminal domain UP15_12460 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_12470 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_12485 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP15_12535 SM00382 ATPases associated with a variety of cellular activities UP15_12540 SM00062 Bacterial periplasmic substrate-binding proteins UP15_12560 SM00829 Enoylreductase UP15_12600 SM00382 ATPases associated with a variety of cellular activities UP15_12705 SM00732 Likely ribonuclease with RNase H fold. UP15_12715 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP15_12725 SM00382 ATPases associated with a variety of cellular activities UP15_12730 SM00062 Bacterial periplasmic substrate-binding proteins UP15_12730 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_12760 SM00028 Tetratricopeptide repeats UP15_12780 SM00382 ATPases associated with a variety of cellular activities UP15_12800 SM00287 Bacterial SH3 domain homologues UP15_12800 SM00646 UP15_12800 UP15_12810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_12810 SM00954 Region found in RelA / SpoT proteins UP15_12860 SM01323 UP15_12860 UP15_12880 SM00382 ATPases associated with a variety of cellular activities UP15_12885 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_12920 SM00257 Lysin motif UP15_12965 SM01317 UP15_12965 UP15_13060 SM00257 Lysin motif UP15_13070 SM01004 Delta-aminolevulinic acid dehydratase UP15_13115 SM00382 ATPases associated with a variety of cellular activities UP15_13115 SM00464 Found in ATP-dependent protease La (LON) UP15_13120 SM00382 ATPases associated with a variety of cellular activities UP15_13125 SM00382 ATPases associated with a variety of cellular activities UP15_13125 SM00994 ClpX C4-type zinc finger UP15_13125 SM01086 C-terminal, D2-small domain, of ClpB protein UP15_13150 SM01329 UP15_13150 UP15_13155 SM00917 LeuA allosteric (dimerisation) domain UP15_13230 SM00857 Resolvase, N terminal domain UP15_13245 SM00487 DEAD-like helicases superfamily UP15_13245 SM00490 helicase superfamily c-terminal domain UP15_13275 SM00909 Sporulation and spore germination UP15_13285 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_13290 SM00421 helix_turn_helix, Lux Regulon UP15_13345 SM00465 GIY-YIG type nucleases (URI domain) UP15_13355 SM00813 Alpha-L-arabinofuranosidase C-terminus UP15_13360 SM00893 Electron transfer flavoprotein domain UP15_13365 SM00893 Electron transfer flavoprotein domain UP15_13395 SM00463 Small MutS-related domain UP15_13395 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP15_13395 SM00534 ATPase domain of DNA mismatch repair MUTS family UP15_13400 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP15_13400 SM00481 DNA polymerase alpha chain like domain UP15_13400 SM00483 DNA polymerase X family UP15_13420 SM00873 B3/4 domain UP15_13420 SM00874 tRNA synthetase B5 domain UP15_13420 SM00896 Ferredoxin-fold anticodon binding domain UP15_13430 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP15_13485 SM00448 cheY-homologous receiver domain UP15_13485 SM00850 LytTr DNA-binding domain UP15_13490 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_13490 SM00387 Histidine kinase-like ATPases UP15_13500 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_13500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_13505 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP15_13520 SM00382 ATPases associated with a variety of cellular activities UP15_13545 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP15_13560 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain UP15_13560 SM01232 UP15_13560 UP15_13565 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP15_13565 SM00474 3'-5' exonuclease UP15_13565 SM00475 5'-3' exonuclease UP15_13565 SM00482 DNA polymerase A domain UP15_13570 SM00387 Histidine kinase-like ATPases UP15_13570 SM00388 His Kinase A (phosphoacceptor) domain UP15_13575 SM00448 cheY-homologous receiver domain UP15_13575 SM00862 Transcriptional regulatory protein, C terminal UP15_13585 SM01329 UP15_13585 UP15_13630 SM00919 Malic enzyme, NAD binding domain UP15_13630 SM01274 UP15_13630 UP15_13635 SM00481 DNA polymerase alpha chain like domain UP15_13665 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_13670 SM00849 Metallo-beta-lactamase superfamily UP15_13695 SM00852 Probable molybdopterin binding domain UP15_13740 SM00487 DEAD-like helicases superfamily UP15_13740 SM00490 helicase superfamily c-terminal domain UP15_13755 SM00421 helix_turn_helix, Lux Regulon UP15_13755 SM00448 cheY-homologous receiver domain UP15_13765 SM00448 cheY-homologous receiver domain UP15_13765 SM00862 Transcriptional regulatory protein, C terminal UP15_13770 SM00387 Histidine kinase-like ATPases UP15_13785 SM00382 ATPases associated with a variety of cellular activities UP15_13805 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_13830 SM00981 UP15_13830 UP15_13865 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP15_13870 SM00363 S4 RNA-binding domain UP15_13870 SM01390 UP15_13870 UP15_13900 SM00363 S4 RNA-binding domain UP15_13915 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_13925 SM00354 helix_turn _helix lactose operon repressor UP15_13930 SM00830 Chorismate mutase type II UP15_13955 SM00382 ATPases associated with a variety of cellular activities UP15_13955 SM00843 UP15_13955 UP15_13995 SM00919 Malic enzyme, NAD binding domain UP15_13995 SM01274 UP15_13995 UP15_14000 SM00849 Metallo-beta-lactamase superfamily UP15_14020 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP15_14055 SM00420 helix_turn_helix, Deoxyribose operon repressor UP15_14060 SM00363 S4 RNA-binding domain UP15_14095 SM00450 Rhodanese Homology Domain UP15_14125 SM00342 helix_turn_helix, arabinose operon control protein UP15_14175 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_14175 SM00091 PAS domain UP15_14195 SM00382 ATPases associated with a variety of cellular activities UP15_14205 SM00382 ATPases associated with a variety of cellular activities UP15_14210 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_14235 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_14300 SM00563 Phosphate acyltransferases UP15_14315 SM00382 ATPases associated with a variety of cellular activities UP15_14375 SM01234 UP15_14375 UP15_14380 SM00947 Carbonic anhydrase UP15_14410 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP15_14595 SM00530 Helix-turn-helix XRE-family like proteins UP15_14610 SM00244 prohibitin homologues UP15_14650 SM00644 UP15_14650 UP15_14740 SM00257 Lysin motif UP15_14815 SM00421 helix_turn_helix, Lux Regulon UP15_14835 SM00530 Helix-turn-helix XRE-family like proteins UP15_14840 SM00530 Helix-turn-helix XRE-family like proteins UP15_14850 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_14850 SM00876 Biotin and Thiamin Synthesis associated domain UP15_14885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_14885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_14885 SM00319 Homologues of the ligand binding domain of Tar UP15_14890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_14890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_14895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_14895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_14895 SM00319 Homologues of the ligand binding domain of Tar UP15_14900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_14900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_14900 SM00319 Homologues of the ligand binding domain of Tar UP15_14925 SM01091 Transporter associated domain UP15_14975 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_14985 SM00344 helix_turn_helix ASNC type UP15_15005 SM00387 Histidine kinase-like ATPases UP15_15005 SM00388 His Kinase A (phosphoacceptor) domain UP15_15010 SM01298 UP15_15010 UP15_15015 SM00479 UP15_15015 UP15_15040 SM00387 Histidine kinase-like ATPases UP15_15045 SM00448 cheY-homologous receiver domain UP15_15055 SM00382 ATPases associated with a variety of cellular activities UP15_15125 SM00421 helix_turn_helix, Lux Regulon UP15_15125 SM00448 cheY-homologous receiver domain UP15_15130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_15130 SM00387 Histidine kinase-like ATPases UP15_15155 SM00052 Putative diguanylate phosphodiesterase UP15_15205 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_15250 SM01002 Alanine dehydrogenase/PNT, C-terminal domain UP15_15250 SM01003 Alanine dehydrogenase/PNT, N-terminal domain UP15_15305 SM00422 helix_turn_helix, mercury resistance UP15_15405 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_15450 SM00835 Cupin UP15_15505 SM00388 His Kinase A (phosphoacceptor) domain UP15_15510 SM00448 cheY-homologous receiver domain UP15_15510 SM00862 Transcriptional regulatory protein, C terminal UP15_15560 SM00382 ATPases associated with a variety of cellular activities UP15_15580 SM00382 ATPases associated with a variety of cellular activities UP15_15580 SM00930 UP15_15580 UP15_15595 SM00493 UP15_15595 UP15_15645 SM00382 ATPases associated with a variety of cellular activities UP15_15660 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_15665 SM00448 cheY-homologous receiver domain UP15_15665 SM00862 Transcriptional regulatory protein, C terminal UP15_15670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_15670 SM00387 Histidine kinase-like ATPases UP15_15670 SM00388 His Kinase A (phosphoacceptor) domain UP15_15705 SM00421 helix_turn_helix, Lux Regulon UP15_15705 SM00448 cheY-homologous receiver domain UP15_15710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_15710 SM00387 Histidine kinase-like ATPases UP15_15740 SM00382 ATPases associated with a variety of cellular activities UP15_15755 SM00710 Parallel beta-helix repeats UP15_15760 SM00858 UP15_15760 UP15_15770 SM00354 helix_turn _helix lactose operon repressor UP15_15780 SM00387 Histidine kinase-like ATPases UP15_15780 SM00388 His Kinase A (phosphoacceptor) domain UP15_15785 SM00448 cheY-homologous receiver domain UP15_15785 SM00862 Transcriptional regulatory protein, C terminal UP15_15790 SM00382 ATPases associated with a variety of cellular activities UP15_15820 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_15880 SM00382 ATPases associated with a variety of cellular activities UP15_15905 SM00448 cheY-homologous receiver domain UP15_15910 SM00387 Histidine kinase-like ATPases UP15_15945 SM00267 diguanylate cyclase UP15_15965 SM00316 Ribosomal protein S1-like RNA-binding domain UP15_15965 SM00357 Cold shock protein domain UP15_15965 SM00955 UP15_15965 UP15_15980 SM00966 SpoVT / AbrB like domain UP15_15985 SM00530 Helix-turn-helix XRE-family like proteins UP15_15990 SM00530 Helix-turn-helix XRE-family like proteins UP15_15995 SM00530 Helix-turn-helix XRE-family like proteins UP15_16020 SM00116 Domain in cystathionine beta-synthase and other proteins. UP15_16020 SM00382 ATPases associated with a variety of cellular activities UP15_16060 SM00382 ATPases associated with a variety of cellular activities UP15_16070 SM01192 UP15_16070 UP15_16070 SM01193 UP15_16070 UP15_16090 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP15_16110 SM00382 ATPases associated with a variety of cellular activities UP15_16115 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_16115 SM00895 UP15_16115 UP15_16135 SM00382 ATPases associated with a variety of cellular activities UP15_16140 SM00382 ATPases associated with a variety of cellular activities UP15_16225 SM00530 Helix-turn-helix XRE-family like proteins UP15_16255 SM00382 ATPases associated with a variety of cellular activities UP15_16260 SM00382 ATPases associated with a variety of cellular activities UP15_16265 SM00382 ATPases associated with a variety of cellular activities UP15_16325 SM00947 Carbonic anhydrase UP15_16380 SM00028 Tetratricopeptide repeats UP15_16475 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_16475 SM00866 UP15_16475 UP15_16510 SM00382 ATPases associated with a variety of cellular activities UP15_16515 SM00487 DEAD-like helicases superfamily UP15_16515 SM00490 helicase superfamily c-terminal domain UP15_16545 SM00448 cheY-homologous receiver domain UP15_16545 SM00862 Transcriptional regulatory protein, C terminal UP15_16550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_16550 SM00387 Histidine kinase-like ATPases UP15_16550 SM00388 His Kinase A (phosphoacceptor) domain UP15_16580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_16590 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_16590 SM00245 tail specific protease UP15_16610 SM00382 ATPases associated with a variety of cellular activities UP15_16635 SM00937 UP15_16635 UP15_16640 SM00957 SecA DEAD-like domain UP15_16640 SM00958 SecA preprotein cross-linking domain UP15_16650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_16650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_16730 SM00487 DEAD-like helicases superfamily UP15_16730 SM00490 helicase superfamily c-terminal domain UP15_16740 SM00421 helix_turn_helix, Lux Regulon UP15_16740 SM00448 cheY-homologous receiver domain UP15_16745 SM00387 Histidine kinase-like ATPases UP15_16790 SM00984 UDP binding domain UP15_16815 SM00646 UP15_16815 UP15_16820 SM00646 UP15_16820 UP15_16850 SM00382 ATPases associated with a variety of cellular activities UP15_16870 SM00984 UDP binding domain UP15_16910 SM00047 Lysozyme subfamily 2 UP15_16910 SM00287 Bacterial SH3 domain homologues UP15_16935 SM00342 helix_turn_helix, arabinose operon control protein UP15_16935 SM00448 cheY-homologous receiver domain UP15_16940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_16940 SM00387 Histidine kinase-like ATPases UP15_16965 SM00354 helix_turn _helix lactose operon repressor UP15_17020 SM00854 Bacterial capsule synthesis protein PGA_cap UP15_17050 SM00354 helix_turn _helix lactose operon repressor UP15_17065 SM00382 ATPases associated with a variety of cellular activities UP15_17080 SM00903 Flavin reductase like domain UP15_17100 SM00344 helix_turn_helix ASNC type UP15_17115 SM00984 UDP binding domain UP15_17125 SM00487 DEAD-like helicases superfamily UP15_17125 SM00490 helicase superfamily c-terminal domain UP15_17130 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_17130 SM00091 PAS domain UP15_17185 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_17195 SM00014 Acid phosphatase homologues UP15_17205 SM00062 Bacterial periplasmic substrate-binding proteins UP15_17205 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_17215 SM00382 ATPases associated with a variety of cellular activities UP15_17225 SM00938 Nitrogen regulatory protein P-II UP15_17250 SM00833 Cobalamin synthesis protein cobW C-terminal domain UP15_17260 SM00729 Elongator protein 3, MiaB family, Radical SAM UP15_17280 SM00327 von Willebrand factor (vWF) type A domain UP15_17285 SM00327 von Willebrand factor (vWF) type A domain UP15_17320 SM00382 ATPases associated with a variety of cellular activities UP15_17380 SM00226 Low molecular weight phosphatase family UP15_17415 SM00937 UP15_17415 UP15_17430 SM00919 Malic enzyme, NAD binding domain UP15_17430 SM01274 UP15_17430 UP15_17445 SM00357 Cold shock protein domain UP15_17445 SM00382 ATPases associated with a variety of cellular activities UP15_17445 SM00959 Rho termination factor, N-terminal domain UP15_17470 SM00448 cheY-homologous receiver domain UP15_17495 SM00382 ATPases associated with a variety of cellular activities UP15_17550 SM00155 Phospholipase D. Active site motifs. UP15_17575 SM00382 ATPases associated with a variety of cellular activities UP15_17580 SM00155 Phospholipase D. Active site motifs. UP15_17600 SM00836 DALR anticodon binding domain UP15_17600 SM01016 Arginyl tRNA synthetase N terminal dom UP15_17685 SM00062 Bacterial periplasmic substrate-binding proteins UP15_17695 SM00382 ATPases associated with a variety of cellular activities UP15_17705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP15_17730 SM00028 Tetratricopeptide repeats UP15_17740 SM00860 SMI1 / KNR4 family UP15_17825 SM00344 helix_turn_helix ASNC type UP15_17895 SM00858 UP15_17895 UP15_17930 SM00835 Cupin UP15_17955 SM00986 Uracil DNA glycosylase superfamily UP15_17955 SM00987 UreE urease accessory protein, C-terminal domain UP15_17975 SM00530 Helix-turn-helix XRE-family like proteins UP15_17995 SM00640 Glycosyl hydrolases family 32 UP15_18005 SM01061 CAT RNA binding domain UP15_18085 SM00342 helix_turn_helix, arabinose operon control protein UP15_18125 SM00028 Tetratricopeptide repeats UP15_18200 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP15_18210 SM00382 ATPases associated with a variety of cellular activities UP15_18220 SM00062 Bacterial periplasmic substrate-binding proteins UP15_18220 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP15_18235 SM00954 Region found in RelA / SpoT proteins UP15_18245 SM00382 ATPases associated with a variety of cellular activities UP15_18255 SM00710 Parallel beta-helix repeats UP15_18310 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP15_18330 SM00656 UP15_18330 UP15_18335 SM00382 ATPases associated with a variety of cellular activities UP15_18340 SM00382 ATPases associated with a variety of cellular activities UP15_18355 SM00382 ATPases associated with a variety of cellular activities UP15_18375 SM00382 ATPases associated with a variety of cellular activities UP15_18390 SM00725 NEAr Transporter domain UP15_18395 SM00725 NEAr Transporter domain UP15_18400 SM00725 NEAr Transporter domain UP15_18495 SM00870 UP15_18495 UP15_18500 SM00530 Helix-turn-helix XRE-family like proteins UP15_18505 SM00530 Helix-turn-helix XRE-family like proteins UP15_18600 SM01061 CAT RNA binding domain UP15_18615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_18625 SM00382 ATPases associated with a variety of cellular activities UP15_18675 SM00347 helix_turn_helix multiple antibiotic resistance protein UP15_18675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP15_18680 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain UP15_18690 SM01133 UP15_18690 UP15_18725 SM00421 helix_turn_helix, Lux Regulon UP15_18735 SM00422 helix_turn_helix, mercury resistance UP15_18745 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP15_18745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP15_18815 SM00354 helix_turn _helix lactose operon repressor UP15_18860 SM00382 ATPases associated with a variety of cellular activities UP15_18890 SM00382 ATPases associated with a variety of cellular activities UP15_18930 SM00382 ATPases associated with a variety of cellular activities UP15_18940 SM00028 Tetratricopeptide repeats UP15_18945 SM01061 CAT RNA binding domain UP15_18985 SM00530 Helix-turn-helix XRE-family like proteins UP15_19000 SM00354 helix_turn _helix lactose operon repressor UP15_19055 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP15_19055 SM00866 UP15_19055 UP15_19095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_19095 SM00387 Histidine kinase-like ATPases UP15_19095 SM00388 His Kinase A (phosphoacceptor) domain UP15_19100 SM00448 cheY-homologous receiver domain UP15_19100 SM00862 Transcriptional regulatory protein, C terminal UP15_19110 SM00849 Metallo-beta-lactamase superfamily UP15_19140 SM00382 ATPases associated with a variety of cellular activities UP15_19160 SM00382 ATPases associated with a variety of cellular activities UP15_19170 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP15_19175 SM00849 Metallo-beta-lactamase superfamily UP15_19190 SM00091 PAS domain UP15_19190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP15_19190 SM00387 Histidine kinase-like ATPases UP15_19190 SM00388 His Kinase A (phosphoacceptor) domain UP15_19195 SM00448 cheY-homologous receiver domain UP15_19195 SM00862 Transcriptional regulatory protein, C terminal UP15_19235 SM00788 Adenylosuccinate synthetase UP15_19255 SM00382 ATPases associated with a variety of cellular activities UP15_19275 SM00822 UP15_19275 UP15_19295 SM00823 Phosphopantetheine attachment site UP15_19300 SM00923 MbtH-like protein UP15_19305 SM00342 helix_turn_helix, arabinose operon control protein UP15_19330 SM00267 diguanylate cyclase UP15_19340 SM01131 UP15_19340 UP15_19360 SM01060 UP15_19360 UP15_19385 SM00382 ATPases associated with a variety of cellular activities UP15_19435 SM00470 ParB-like nuclease domain UP15_19450 SM00470 ParB-like nuclease domain UP15_19460 SM01228 UP15_19460 UP15_19470 SM00393 Putative single-stranded nucleic acids-binding domain UP15_19470 SM01245 UP15_19470