locus-tag class description UP12_00005 PF00308 Bacterial dnaA protein UP12_00005 PF08299 Bacterial dnaA protein helix-turn-helix UP12_00005 PF11638 DnaA N-terminal domain UP12_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain UP12_00010 PF02767 DNA polymerase III beta subunit, central domain UP12_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain UP12_00020 PF02463 RecF/RecN/SMC N terminal domain UP12_00025 PF04025 Domain of unknown function (DUF370) UP12_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_00030 PF00986 DNA gyrase B subunit, carboxyl terminus UP12_00030 PF00204 DNA gyrase B UP12_00030 PF01751 Toprim domain UP12_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A UP12_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller UP12_00065 PF14175 YaaC-like Protein UP12_00070 PF00571 CBS domain UP12_00070 PF00478 IMP dehydrogenase / GMP reductase domain UP12_00075 PF07943 Penicillin-binding protein 5, C-terminal domain UP12_00075 PF00768 D-alanyl-D-alanine carboxypeptidase UP12_00080 PF00392 Bacterial regulatory proteins, gntR family UP12_00080 PF00155 Aminotransferase class I and II UP12_00085 PF01680 SOR/SNZ family UP12_00090 PF01174 SNO glutamine amidotransferase family UP12_00095 PF02403 Seryl-tRNA synthetase N-terminal domain UP12_00095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_00100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_00110 PF01712 Deoxynucleoside kinase UP12_00115 PF01712 Deoxynucleoside kinase UP12_00120 PF00704 Glycosyl hydrolases family 18 UP12_00120 PF01476 LysM domain UP12_00125 PF00857 Isochorismatase family UP12_00130 PF14437 MafB19-like deaminase UP12_00135 PF12169 DNA polymerase III subunits gamma and tau domain III UP12_00140 PF02575 YbaB/EbfC DNA-binding family UP12_00145 PF02132 RecR protein UP12_00145 PF13662 Toprim domain UP12_00150 PF10704 Protein of unknown function (DUF2508) UP12_00155 PF07441 SigmaK-factor processing regulatory protein BofA UP12_00185 PF10764 Inhibitor of sigma-G Gin UP12_00190 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein UP12_00195 PF05816 Toxic anion resistance protein (TelA) UP12_00200 PF01276 Orn/Lys/Arg decarboxylase, major domain UP12_00200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UP12_00205 PF02223 Thymidylate kinase UP12_00210 PF06153 Cyclic-di-AMP receptor UP12_00215 PF03885 Protein of unknown function (DUF327) UP12_00220 PF09115 DNA polymerase III, delta subunit, C terminal UP12_00225 PF04468 PSP1 C-terminal conserved region UP12_00230 PF06156 Initiation control protein YabA UP12_00235 PF05175 Methyltransferase small domain UP12_00240 PF01541 GIY-YIG catalytic domain UP12_00245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UP12_00250 PF18277 AbrB C-terminal domain UP12_00250 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_00255 PF01588 Putative tRNA binding domain UP12_00255 PF09334 tRNA synthetases class I (M) UP12_00255 PF08264 Anticodon-binding domain of tRNA UP12_00260 PF01026 TatD related DNase UP12_00265 PF07501 G5 domain UP12_00265 PF03990 G5-linked-Ubiquitin-like domain UP12_00265 PF06725 3D domain UP12_00270 PF13662 Toprim domain UP12_00270 PF13331 Domain of unknown function (DUF4093) UP12_00275 PF00398 Ribosomal RNA adenine dimethylase UP12_00280 PF05582 YabG peptidase U57 UP12_00285 PF06257 Biofilm formation stimulator VEG UP12_00290 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_00295 PF00288 GHMP kinases N terminal domain UP12_00295 PF08544 GHMP kinases C terminal UP12_00300 PF00156 Phosphoribosyl transferase domain UP12_00300 PF09182 Bacterial purine repressor, N-terminal UP12_00305 PF01042 Endoribonuclease L-PSP UP12_00310 PF04026 SpoVG UP12_00315 PF00483 Nucleotidyl transferase UP12_00315 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_00320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase UP12_00320 PF14572 Phosphoribosyl synthetase-associated domain UP12_00325 PF14693 Ribosomal protein TL5, C-terminal domain UP12_00325 PF01386 Ribosomal L25p family UP12_00330 PF01195 Peptidyl-tRNA hydrolase UP12_00335 PF10955 Protein of unknown function (DUF2757) UP12_00340 PF02559 CarD-like/TRCF domain UP12_00340 PF00270 DEAD/DEAH box helicase UP12_00340 PF03461 TRCF domain UP12_00340 PF00271 Helicase conserved C-terminal domain UP12_00340 PF17757 UvrB interaction domain UP12_00345 PF15714 Stage V sporulation protein T C-terminal, transcription factor UP12_00345 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_00350 PF01943 Polysaccharide biosynthesis protein UP12_00350 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_00355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UP12_00355 PF03819 MazG nucleotide pyrophosphohydrolase domain UP12_00360 PF01479 S4 domain UP12_00365 PF07873 YabP family UP12_00370 PF09578 Spore cortex protein YabQ (Spore_YabQ) UP12_00375 PF04977 Septum formation initiator UP12_00380 PF00575 S1 RNA binding domain UP12_00395 PF07228 Stage II sporulation protein E (SpoIIE) UP12_00400 PF00092 von Willebrand factor type A domain UP12_00405 PF00069 Protein kinase domain UP12_00410 PF01171 PP-loop family UP12_00410 PF11734 TilS substrate C-terminal domain UP12_00410 PF09179 TilS substrate binding domain UP12_00420 PF06480 FtsH Extracellular UP12_00420 PF17862 AAA+ lid domain UP12_00420 PF00004 ATPase family associated with various cellular activities (AAA) UP12_00420 PF01434 Peptidase family M41 UP12_00425 PF03309 Type III pantothenate kinase UP12_00430 PF01430 Hsp33 protein UP12_00435 PF13145 PPIC-type PPIASE domain UP12_00440 PF00291 Pyridoxal-phosphate dependent enzyme UP12_00445 PF00425 chorismate binding enzyme UP12_00445 PF04715 Anthranilate synthase component I, N terminal region UP12_00450 PF00117 Glutamine amidotransferase class-I UP12_00455 PF01063 Amino-transferase class IV UP12_00460 PF00809 Pterin binding enzyme UP12_00465 PF02152 Dihydroneopterin aldolase UP12_00470 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) UP12_00475 PF01381 Helix-turn-helix UP12_00480 PF01207 Dihydrouridine synthase (Dus) UP12_00485 PF00152 tRNA synthetases class II (D, K and N) UP12_00485 PF01336 OB-fold nucleic acid binding domain UP12_00565 PF17727 CtsR C-terminal dimerization domain UP12_00565 PF05848 CtsR N-terminal HTH domain UP12_00570 PF02151 UvrB/uvrC motif UP12_00575 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain UP12_00580 PF02861 Clp amino terminal domain, pathogenicity island component UP12_00580 PF00004 ATPase family associated with various cellular activities (AAA) UP12_00580 PF07724 AAA domain (Cdc48 subfamily) UP12_00580 PF17871 AAA lid domain UP12_00580 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_00585 PF18073 Rubredoxin metal binding domain UP12_00590 PF10635 DisA bacterial checkpoint controller linker region UP12_00590 PF02457 DisA bacterial checkpoint controller nucleotide-binding UP12_00600 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase UP12_00605 PF02542 YgbB family UP12_00610 PF00749 tRNA synthetases class I (E and Q), catalytic domain UP12_00615 PF06426 Serine acetyltransferase, N-terminal UP12_00615 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_00620 PF09190 DALR domain UP12_00620 PF01406 tRNA synthetases class I (C) catalytic domain UP12_00625 PF00636 Ribonuclease III domain UP12_00630 PF00588 SpoU rRNA Methylase family UP12_00630 PF08032 RNA 2'-O ribose methyltransferase substrate binding UP12_00635 PF05991 YacP-like NYN domain UP12_00640 PF08281 Sigma-70, region 4 UP12_00640 PF04542 Sigma-70 region 2 UP12_00645 PF00584 SecE/Sec61-gamma subunits of protein translocation complex UP12_00650 PF02357 Transcription termination factor nusG UP12_00650 PF00467 KOW motif UP12_00655 PF03946 Ribosomal protein L11, N-terminal domain UP12_00655 PF00298 Ribosomal protein L11, RNA binding domain UP12_00660 PF00687 Ribosomal protein L1p/L10e family UP12_00665 PF00466 Ribosomal protein L10 UP12_00670 PF16320 Ribosomal protein L7/L12 dimerisation domain UP12_00670 PF00542 Ribosomal protein L7/L12 C-terminal domain UP12_00675 PF05175 Methyltransferase small domain UP12_00680 PF04560 RNA polymerase Rpb2, domain 7 UP12_00680 PF04565 RNA polymerase Rpb2, domain 3 UP12_00680 PF04561 RNA polymerase Rpb2, domain 2 UP12_00680 PF00562 RNA polymerase Rpb2, domain 6 UP12_00680 PF04563 RNA polymerase beta subunit UP12_00680 PF10385 RNA polymerase beta subunit external 1 domain UP12_00685 PF05000 RNA polymerase Rpb1, domain 4 UP12_00685 PF04983 RNA polymerase Rpb1, domain 3 UP12_00685 PF00623 RNA polymerase Rpb1, domain 2 UP12_00685 PF04997 RNA polymerase Rpb1, domain 1 UP12_00685 PF04998 RNA polymerase Rpb1, domain 5 UP12_00690 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family UP12_00695 PF00164 Ribosomal protein S12/S23 UP12_00700 PF00177 Ribosomal protein S7p/S5e UP12_00705 PF03764 Elongation factor G, domain IV UP12_00705 PF14492 Elongation Factor G, domain II UP12_00705 PF00679 Elongation factor G C-terminus UP12_00705 PF00009 Elongation factor Tu GTP binding domain UP12_00705 PF03144 Elongation factor Tu domain 2 UP12_00710 PF03144 Elongation factor Tu domain 2 UP12_00710 PF00009 Elongation factor Tu GTP binding domain UP12_00710 PF03143 Elongation factor Tu C-terminal domain UP12_00715 PF12146 Serine aminopeptidase, S33 UP12_00720 PF00338 Ribosomal protein S10p/S20e UP12_00725 PF00297 Ribosomal protein L3 UP12_00730 PF00573 Ribosomal protein L4/L1 family UP12_00735 PF00276 Ribosomal protein L23 UP12_00740 PF03947 Ribosomal Proteins L2, C-terminal domain UP12_00740 PF00181 Ribosomal Proteins L2, RNA binding domain UP12_00745 PF00203 Ribosomal protein S19 UP12_00750 PF00237 Ribosomal protein L22p/L17e UP12_00755 PF07650 KH domain UP12_00755 PF00189 Ribosomal protein S3, C-terminal domain UP12_00760 PF00252 Ribosomal protein L16p/L10e UP12_00765 PF00831 Ribosomal L29 protein UP12_00770 PF00366 Ribosomal protein S17 UP12_00775 PF00238 Ribosomal protein L14p/L23e UP12_00780 PF00467 KOW motif UP12_00780 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 UP12_00785 PF00281 Ribosomal protein L5 UP12_00785 PF00673 ribosomal L5P family C-terminus UP12_00790 PF00253 Ribosomal protein S14p/S29e UP12_00795 PF00410 Ribosomal protein S8 UP12_00800 PF00347 Ribosomal protein L6 UP12_00805 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast UP12_00810 PF03719 Ribosomal protein S5, C-terminal domain UP12_00810 PF00333 Ribosomal protein S5, N-terminal domain UP12_00815 PF00327 Ribosomal protein L30p/L7e UP12_00820 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A UP12_00825 PF00344 SecY translocase UP12_00830 PF05191 Adenylate kinase, active site lid UP12_00835 PF00557 Metallopeptidase family M24 UP12_00845 PF01176 Translation initiation factor 1A / IF-1 UP12_00850 PF00444 Ribosomal protein L36 UP12_00855 PF00416 Ribosomal protein S13/S18 UP12_00860 PF00411 Ribosomal protein S11 UP12_00865 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain UP12_00865 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain UP12_00865 PF01000 RNA polymerase Rpb3/RpoA insert domain UP12_00870 PF01196 Ribosomal protein L17 UP12_00875 PF00005 ABC transporter UP12_00880 PF00005 ABC transporter UP12_00885 PF02361 Cobalt transport protein UP12_00890 PF01416 tRNA pseudouridine synthase UP12_00895 PF00572 Ribosomal protein L13 UP12_00900 PF00380 Ribosomal protein S9/S16 UP12_00905 PF13302 Acetyltransferase (GNAT) domain UP12_00930 PF10730 Protein of unknown function (DUF2521) UP12_00935 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_00940 PF10609 NUBPL iron-transfer P-loop NTPase UP12_00945 PF17898 Spore germination GerD central core domain UP12_00950 PF14089 KinB-signalling pathway activation in sporulation UP12_00955 PF01522 Polysaccharide deacetylase UP12_00985 PF00916 Sulfate permease family UP12_00985 PF01740 STAS domain UP12_00990 PF01758 Sodium Bile acid symporter family UP12_00995 PF07075 Protein of unknown function (DUF1343) UP12_01000 PF01915 Glycosyl hydrolase family 3 C-terminal domain UP12_01000 PF00933 Glycosyl hydrolase family 3 N terminal domain UP12_01005 PF00144 Beta-lactamase UP12_01010 PF00367 phosphotransferase system, EIIB UP12_01010 PF02378 Phosphotransferase system, EIIC UP12_01015 PF01418 Helix-turn-helix domain, rpiR family UP12_01015 PF01380 SIS domain UP12_01020 PF13580 SIS domain UP12_01050 PF00491 Arginase family UP12_01055 PF08281 Sigma-70, region 4 UP12_01055 PF04542 Sigma-70 region 2 UP12_01060 PF13490 Putative zinc-finger UP12_01065 PF02457 DisA bacterial checkpoint controller nucleotide-binding UP12_01070 PF07949 YbbR-like protein UP12_01075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UP12_01075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UP12_01075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UP12_01075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UP12_01080 PF01380 SIS domain UP12_01130 PF13732 Domain of unknown function (DUF4162) UP12_01130 PF00005 ABC transporter UP12_01145 PF00005 ABC transporter UP12_01160 PF13905 Thioredoxin-like UP12_01170 PF04235 Protein of unknown function (DUF418) UP12_01180 PF00005 ABC transporter UP12_01190 PF01381 Helix-turn-helix UP12_01200 PF00561 alpha/beta hydrolase fold UP12_01205 PF00440 Bacterial regulatory proteins, tetR family UP12_01205 PF17922 Tetracyclin repressor-like, C-terminal domain UP12_01220 PF00324 Amino acid permease UP12_01225 PF03009 Glycerophosphoryl diester phosphodiesterase family UP12_01230 PF07690 Major Facilitator Superfamily UP12_01240 PF03190 Protein of unknown function, DUF255 UP12_01250 PF00440 Bacterial regulatory proteins, tetR family UP12_01255 PF00106 short chain dehydrogenase UP12_01260 PF00107 Zinc-binding dehydrogenase UP12_01260 PF08240 Alcohol dehydrogenase GroES-like domain UP12_01265 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_01265 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_01280 PF02583 Metal-sensitive transcriptional repressor UP12_01285 PF13686 DsrE/DsrF/DrsH-like family UP12_01295 PF00581 Rhodanese-like domain UP12_01295 PF01206 Sulfurtransferase TusA UP12_01300 PF00753 Metallo-beta-lactamase superfamily UP12_01300 PF00581 Rhodanese-like domain UP12_01305 PF01206 Sulfurtransferase TusA UP12_01310 PF01925 Sulfite exporter TauE/SafE UP12_01315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_01315 PF03129 Anticodon binding domain UP12_01315 PF09180 Prolyl-tRNA synthetase, C-terminal UP12_01320 PF07690 Major Facilitator Superfamily UP12_01330 PF01047 MarR family UP12_01340 PF04463 Protein of unknown function (DUF523) UP12_01350 PF00248 Aldo/keto reductase family UP12_01355 PF00465 Iron-containing alcohol dehydrogenase UP12_01365 PF13520 Amino acid permease UP12_01375 PF00874 PRD domain UP12_01375 PF03123 CAT RNA binding domain UP12_01380 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_01380 PF02378 Phosphotransferase system, EIIC UP12_01380 PF00367 phosphotransferase system, EIIB UP12_01385 PF00232 Glycosyl hydrolase family 1 UP12_01405 PF05043 Mga helix-turn-helix domain UP12_01405 PF00874 PRD domain UP12_01405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_01405 PF08279 HTH domain UP12_01410 PF00480 ROK family UP12_01415 PF01074 Glycosyl hydrolases family 38 N-terminal domain UP12_01415 PF07748 Glycosyl hydrolases family 38 C-terminal domain UP12_01415 PF09261 Alpha mannosidase middle domain UP12_01425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_01435 PF00082 Subtilase family UP12_01435 PF17936 Bacterial Ig domain UP12_01450 PF00324 Amino acid permease UP12_01455 PF02574 Homocysteine S-methyltransferase UP12_01460 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_01460 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_01465 PF03551 Transcriptional regulator PadR-like family UP12_01475 PF07690 Major Facilitator Superfamily UP12_01495 PF00082 Subtilase family UP12_01500 PF01425 Amidase UP12_01505 PF00440 Bacterial regulatory proteins, tetR family UP12_01510 PF07883 Cupin domain UP12_01515 PF08240 Alcohol dehydrogenase GroES-like domain UP12_01515 PF00107 Zinc-binding dehydrogenase UP12_01515 PF13823 Alcohol dehydrogenase GroES-associated UP12_01520 PF01047 MarR family UP12_01525 PF00501 AMP-binding enzyme UP12_01525 PF13193 AMP-binding enzyme C-terminal domain UP12_01530 PF13520 Amino acid permease UP12_01540 PF00561 alpha/beta hydrolase fold UP12_01545 PF01235 Sodium:alanine symporter family UP12_01550 PF04960 Glutaminase UP12_01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_01560 PF08664 YcbB domain UP12_01560 PF00072 Response regulator receiver domain UP12_01565 PF05225 helix-turn-helix, Psq domain UP12_01565 PF02810 SEC-C motif UP12_01575 PF00248 Aldo/keto reductase family UP12_01580 PF14501 GHKL domain UP12_01585 PF00072 Response regulator receiver domain UP12_01585 PF04397 LytTr DNA-binding domain UP12_01590 PF00005 ABC transporter UP12_01595 PF12679 ABC-2 family transporter protein UP12_01605 PF17118 Domain of unknown function (DUF5105) UP12_01605 PF11611 Domain of unknown function (DUF4352) UP12_01610 PF07486 Cell Wall Hydrolase UP12_01625 PF00296 Luciferase-like monooxygenase UP12_01630 PF02342 TerD domain UP12_01635 PF02342 TerD domain UP12_01640 PF02342 TerD domain UP12_01645 PF03741 Integral membrane protein TerC family UP12_01670 PF14266 Putative component of 'biosynthetic module' UP12_01675 PF05816 Toxic anion resistance protein (TelA) UP12_01680 PF00005 ABC transporter UP12_01680 PF00571 CBS domain UP12_01685 PF00528 Binding-protein-dependent transport system inner membrane component UP12_01690 PF04069 Substrate binding domain of ABC-type glycine betaine transport system UP12_01705 PF01546 Peptidase family M20/M25/M40 UP12_01705 PF07687 Peptidase dimerisation domain UP12_01710 PF03606 C4-dicarboxylate anaerobic carrier UP12_01715 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain UP12_01715 PF00056 lactate/malate dehydrogenase, NAD binding domain UP12_01720 PF02652 L-lactate permease UP12_01725 PF00356 Bacterial regulatory proteins, lacI family UP12_01730 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UP12_01735 PF05116 Sucrose-6F-phosphate phosphohydrolase UP12_01740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_01740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain UP12_01745 PF07690 Major Facilitator Superfamily UP12_01750 PF01810 LysE type translocator UP12_01760 PF08892 YqcI/YcgG family UP12_01765 PF00324 Amino acid permease UP12_01770 PF09347 Domain of unknown function (DUF1989) UP12_01775 PF02540 NAD synthase UP12_01795 PF18801 response regulator aspartate phosphatase H, N terminal UP12_01795 PF13181 Tetratricopeptide repeat UP12_01810 PF00171 Aldehyde dehydrogenase family UP12_01815 PF01487 Type I 3-dehydroquinase UP12_01820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_01820 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_01820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_01830 PF02515 CoA-transferase family III UP12_01835 PF07690 Major Facilitator Superfamily UP12_01845 PF01614 Bacterial transcriptional regulator UP12_01845 PF09339 IclR helix-turn-helix domain UP12_01850 PF01202 Shikimate kinase UP12_01855 PF00701 Dihydrodipicolinate synthetase family UP12_01860 PF00356 Bacterial regulatory proteins, lacI family UP12_01865 PF07690 Major Facilitator Superfamily UP12_01870 PF08241 Methyltransferase domain UP12_01875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_01875 PF03466 LysR substrate binding domain UP12_01880 PF00795 Carbon-nitrogen hydrolase UP12_01885 PF05448 Acetyl xylan esterase (AXE1) UP12_01895 PF10127 RNA repair pathway DNA polymerase beta family UP12_01900 PF01619 Proline dehydrogenase UP12_01905 PF00171 Aldehyde dehydrogenase family UP12_01910 PF17853 GGDEF-like domain UP12_01910 PF13556 PucR C-terminal helix-turn-helix domain UP12_01915 PF02040 Arsenical pump membrane protein UP12_01920 PF00528 Binding-protein-dependent transport system inner membrane component UP12_01925 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_01930 PF10925 Protein of unknown function (DUF2680) UP12_01935 PF12706 Beta-lactamase superfamily domain UP12_01940 PF01037 Lrp/AsnC ligand binding domain UP12_01945 PF02522 Aminoglycoside 3-N-acetyltransferase UP12_01950 PF11033 Competence protein J (ComJ) UP12_01955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_01955 PF00672 HAMP domain UP12_01955 PF17202 Single cache domain 3 UP12_01960 PF14040 Deoxyribonuclease NucA/NucB UP12_01970 PF05378 Hydantoinase/oxoprolinase N-terminal region UP12_01970 PF01968 Hydantoinase/oxoprolinase UP12_01985 PF08402 TOBE domain UP12_01985 PF00005 ABC transporter UP12_01990 PF00528 Binding-protein-dependent transport system inner membrane component UP12_01995 PF00528 Binding-protein-dependent transport system inner membrane component UP12_02000 PF00550 Phosphopantetheine attachment site UP12_02000 PF00668 Condensation domain UP12_02000 PF13193 AMP-binding enzyme C-terminal domain UP12_02000 PF00501 AMP-binding enzyme UP12_02005 PF00668 Condensation domain UP12_02005 PF00550 Phosphopantetheine attachment site UP12_02005 PF13193 AMP-binding enzyme C-terminal domain UP12_02005 PF00501 AMP-binding enzyme UP12_02010 PF13193 AMP-binding enzyme C-terminal domain UP12_02010 PF00501 AMP-binding enzyme UP12_02010 PF00668 Condensation domain UP12_02010 PF00550 Phosphopantetheine attachment site UP12_02010 PF00975 Thioesterase domain UP12_02015 PF00550 Phosphopantetheine attachment site UP12_02015 PF00668 Condensation domain UP12_02015 PF13193 AMP-binding enzyme C-terminal domain UP12_02015 PF00501 AMP-binding enzyme UP12_02020 PF00550 Phosphopantetheine attachment site UP12_02020 PF00501 AMP-binding enzyme UP12_02020 PF13193 AMP-binding enzyme C-terminal domain UP12_02020 PF00668 Condensation domain UP12_02025 PF00975 Thioesterase domain UP12_02030 PF00892 EamA-like transporter family UP12_02035 PF00392 Bacterial regulatory proteins, gntR family UP12_02035 PF00155 Aminotransferase class I and II UP12_02040 PF01648 4'-phosphopantetheinyl transferase superfamily UP12_02060 PF04203 Sortase domain UP12_02065 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_02065 PF18277 AbrB C-terminal domain UP12_02070 PF00005 ABC transporter UP12_02075 PF00528 Binding-protein-dependent transport system inner membrane component UP12_02080 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_02085 PF00324 Amino acid permease UP12_02090 PF00854 POT family UP12_02095 PF13229 Right handed beta helix region UP12_02095 PF12708 Pectate lyase superfamily protein UP12_02110 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_02115 PF00528 Binding-protein-dependent transport system inner membrane component UP12_02120 PF00005 ABC transporter UP12_02130 PF03972 MmgE/PrpD family UP12_02135 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain UP12_02135 PF01740 STAS domain UP12_02140 PF00696 Amino acid kinase family UP12_02140 PF13840 ACT domain UP12_02145 PF07690 Major Facilitator Superfamily UP12_02150 PF00440 Bacterial regulatory proteins, tetR family UP12_02160 PF01022 Bacterial regulatory protein, arsR family UP12_02165 PF00392 Bacterial regulatory proteins, gntR family UP12_02165 PF00155 Aminotransferase class I and II UP12_02170 PF00202 Aminotransferase class-III UP12_02175 PF13520 Amino acid permease UP12_02180 PF00171 Aldehyde dehydrogenase family UP12_02185 PF02525 Flavodoxin-like fold UP12_02190 PF07987 Domain of unkown function (DUF1775) UP12_02195 PF04234 CopC domain UP12_02195 PF13115 YtkA-like UP12_02195 PF05425 Copper resistance protein D UP12_02200 PF02378 Phosphotransferase system, EIIC UP12_02200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_02205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_02210 PF08125 Mannitol dehydrogenase C-terminal domain UP12_02210 PF01232 Mannitol dehydrogenase Rossmann domain UP12_02215 PF02743 Cache domain UP12_02215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_02215 PF00672 HAMP domain UP12_02235 PF12681 Glyoxalase-like domain UP12_02240 PF05901 Excalibur calcium-binding domain UP12_02250 PF03746 LamB/YcsF family UP12_02255 PF01566 Natural resistance-associated macrophage protein UP12_02260 PF07286 Protein of unknown function (DUF1445) UP12_02265 PF02682 Carboxyltransferase domain, subdomain C and D UP12_02270 PF02626 Carboxyltransferase domain, subdomain A and B UP12_02275 PF09339 IclR helix-turn-helix domain UP12_02275 PF01614 Bacterial transcriptional regulator UP12_02280 PF02525 Flavodoxin-like fold UP12_02285 PF13472 GDSL-like Lipase/Acylhydrolase family UP12_02295 PF08279 HTH domain UP12_02295 PF05043 Mga helix-turn-helix domain UP12_02295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_02295 PF00874 PRD domain UP12_02295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_02300 PF13649 Methyltransferase domain UP12_02310 PF16242 Pyridoxamine 5'-phosphate oxidase like UP12_02330 PF12823 Domain of unknown function (DUF3817) UP12_02335 PF00392 Bacterial regulatory proteins, gntR family UP12_02335 PF07729 FCD domain UP12_02340 PF12833 Helix-turn-helix domain UP12_02340 PF02311 AraC-like ligand binding domain UP12_02345 PF00892 EamA-like transporter family UP12_02350 PF00180 Isocitrate/isopropylmalate dehydrogenase UP12_02355 PF01131 DNA topoisomerase UP12_02355 PF01751 Toprim domain UP12_02365 PF00990 Diguanylate cyclase, GGDEF domain UP12_02370 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) UP12_02380 PF03170 Bacterial cellulose synthase subunit UP12_02385 PF13520 Amino acid permease UP12_02390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_02390 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_02390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_02395 PF14449 Pre-toxin TG UP12_02395 PF04740 LXG domain of WXG superfamily UP12_02395 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues UP12_02415 PF13302 Acetyltransferase (GNAT) domain UP12_02420 PF01566 Natural resistance-associated macrophage protein UP12_02425 PF04226 Transglycosylase associated protein UP12_02430 PF12787 EcsC protein family UP12_02435 PF03480 Bacterial extracellular solute-binding protein, family 7 UP12_02440 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_02440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_02440 PF17203 Single cache domain 3 UP12_02445 PF08279 HTH domain UP12_02445 PF00072 Response regulator receiver domain UP12_02450 PF00375 Sodium:dicarboxylate symporter family UP12_02455 PF01594 AI-2E family transporter UP12_02460 PF00375 Sodium:dicarboxylate symporter family UP12_02465 PF00005 ABC transporter UP12_02480 PF00085 Thioredoxin UP12_02485 PF07478 D-ala D-ala ligase C-terminus UP12_02485 PF01820 D-ala D-ala ligase N-terminus UP12_02490 PF02875 Mur ligase family, glutamate ligase domain UP12_02490 PF08245 Mur ligase middle domain UP12_02490 PF01225 Mur ligase family, catalytic domain UP12_02495 PF00561 alpha/beta hydrolase fold UP12_02505 PF00270 DEAD/DEAH box helicase UP12_02505 PF00271 Helicase conserved C-terminal domain UP12_02510 PF03703 Bacterial PH domain UP12_02515 PF03703 Bacterial PH domain UP12_02520 PF01694 Rhomboid family UP12_02525 PF01648 4'-phosphopantetheinyl transferase superfamily UP12_02535 PF00842 Alanine racemase, C-terminal domain UP12_02535 PF01168 Alanine racemase, N-terminal domain UP12_02540 PF01402 Ribbon-helix-helix protein, copG family UP12_02545 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system UP12_02550 PF01740 STAS domain UP12_02550 PF08678 Rsbr N terminal UP12_02555 PF01740 STAS domain UP12_02560 PF13581 Histidine kinase-like ATPase domain UP12_02565 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain UP12_02565 PF07228 Stage II sporulation protein E (SpoIIE) UP12_02570 PF01740 STAS domain UP12_02575 PF13581 Histidine kinase-like ATPase domain UP12_02580 PF04542 Sigma-70 region 2 UP12_02580 PF04539 Sigma-70 region 3 UP12_02580 PF04545 Sigma-70, region 4 UP12_02585 PF07228 Stage II sporulation protein E (SpoIIE) UP12_02590 PF16921 Tex protein YqgF-like domain UP12_02590 PF09371 Tex-like protein N-terminal domain UP12_02590 PF00575 S1 RNA binding domain UP12_02590 PF17674 HHH domain UP12_02595 PF10263 SprT-like family UP12_02595 PF17283 SprT-like zinc ribbon domain UP12_02600 PF00676 Dehydrogenase E1 component UP12_02605 PF02780 Transketolase, C-terminal domain UP12_02605 PF02779 Transketolase, pyrimidine binding domain UP12_02610 PF02817 e3 binding domain UP12_02610 PF00364 Biotin-requiring enzyme UP12_02610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_02615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_02615 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_02620 PF02954 Bacterial regulatory protein, Fis family UP12_02620 PF01590 GAF domain UP12_02620 PF00158 Sigma-54 interaction domain UP12_02660 PF14659 Phage integrase, N-terminal SAM-like domain UP12_02660 PF00589 Phage integrase family UP12_02665 PF06114 IrrE N-terminal-like domain UP12_02670 PF01381 Helix-turn-helix UP12_02690 PF06125 Bacterial protein of unknown function (DUF961) UP12_02705 PF18106 Rolling Circle replication initiation protein N-terminal domain UP12_02705 PF02486 Replication initiation factor UP12_02750 PF00437 Type II/IV secretion system protein UP12_02770 PF12642 Conjugative transposon protein TcpC UP12_02780 PF12648 TcpE family UP12_02795 PF00877 NlpC/P60 family UP12_02810 PF18801 response regulator aspartate phosphatase H, N terminal UP12_02820 PF08240 Alcohol dehydrogenase GroES-like domain UP12_02820 PF00107 Zinc-binding dehydrogenase UP12_02830 PF00561 alpha/beta hydrolase fold UP12_02845 PF00082 Subtilase family UP12_02850 PF00313 'Cold-shock' DNA-binding domain UP12_02855 PF02559 CarD-like/TRCF domain UP12_02860 PF00107 Zinc-binding dehydrogenase UP12_02860 PF08240 Alcohol dehydrogenase GroES-like domain UP12_02865 PF13411 MerR HTH family regulatory protein UP12_02870 PF00722 Glycosyl hydrolases family 16 UP12_02875 PF00440 Bacterial regulatory proteins, tetR family UP12_02880 PF07690 Major Facilitator Superfamily UP12_02905 PF00106 short chain dehydrogenase UP12_02925 PF00710 Asparaginase, N-terminal UP12_02925 PF17763 Glutaminase/Asparaginase C-terminal domain UP12_02930 PF00561 alpha/beta hydrolase fold UP12_02940 PF00440 Bacterial regulatory proteins, tetR family UP12_02940 PF08361 MAATS-type transcriptional repressor, C-terminal region UP12_02945 PF07690 Major Facilitator Superfamily UP12_02950 PF01757 Acyltransferase family UP12_02955 PF03176 MMPL family UP12_02960 PF07730 Histidine kinase UP12_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_02965 PF00072 Response regulator receiver domain UP12_02965 PF00196 Bacterial regulatory proteins, luxR family UP12_02980 PF00583 Acetyltransferase (GNAT) family UP12_02985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_02995 PF00440 Bacterial regulatory proteins, tetR family UP12_03000 PF01872 RibD C-terminal domain UP12_03005 PF01047 MarR family UP12_03010 PF00881 Nitroreductase family UP12_03025 PF07883 Cupin domain UP12_03025 PF01381 Helix-turn-helix UP12_03030 PF01810 LysE type translocator UP12_03035 PF00583 Acetyltransferase (GNAT) family UP12_03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_03040 PF03466 LysR substrate binding domain UP12_03045 PF00248 Aldo/keto reductase family UP12_03055 PF01596 O-methyltransferase UP12_03065 PF03591 AzlC protein UP12_03070 PF00892 EamA-like transporter family UP12_03080 PF00375 Sodium:dicarboxylate symporter family UP12_03120 PF00586 AIR synthase related protein, N-terminal domain UP12_03120 PF02769 AIR synthase related protein, C-terminal domain UP12_03125 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE UP12_03130 PF00814 Glycoprotease family UP12_03135 PF00583 Acetyltransferase (GNAT) family UP12_03140 PF00814 Glycoprotease family UP12_03145 PF12848 ABC transporter UP12_03145 PF16326 ABC transporter C-terminal domain UP12_03145 PF00005 ABC transporter UP12_03150 PF01967 MoaC family UP12_03155 PF06971 Putative DNA-binding protein N-terminus UP12_03155 PF02629 CoA binding domain UP12_03160 PF02416 mttA/Hcf106 family UP12_03165 PF00902 Sec-independent protein translocase protein (TatC) UP12_03170 PF00293 NUDIX domain UP12_03175 PF14146 Domain of unknown function (DUF4305) UP12_03180 PF02517 CPBP intramembrane metalloprotease UP12_03185 PF00166 Chaperonin 10 Kd subunit UP12_03190 PF00118 TCP-1/cpn60 chaperonin family UP12_03195 PF01047 MarR family UP12_03200 PF00583 Acetyltransferase (GNAT) family UP12_03205 PF04299 Putative FMN-binding domain UP12_03225 PF03330 Lytic transglycolase UP12_03230 PF07676 WD40-like Beta Propeller Repeat UP12_03240 PF00394 Multicopper oxidase UP12_03240 PF07731 Multicopper oxidase UP12_03240 PF07732 Multicopper oxidase UP12_03245 PF00324 Amino acid permease UP12_03250 PF01545 Cation efflux family UP12_03250 PF16916 Dimerisation domain of Zinc Transporter UP12_03255 PF17863 AAA lid domain UP12_03255 PF07726 ATPase family associated with various cellular activities (AAA) UP12_03260 PF01882 Protein of unknown function DUF58 UP12_03265 PF01841 Transglutaminase-like superfamily UP12_03265 PF11992 Domain of unknown function (DUF3488) UP12_03265 PF13559 Domain of unknown function (DUF4129) UP12_03270 PF00117 Glutamine amidotransferase class-I UP12_03270 PF00958 GMP synthase C terminal domain UP12_03270 PF02540 NAD synthase UP12_03290 PF04397 LytTr DNA-binding domain UP12_03290 PF00072 Response regulator receiver domain UP12_03295 PF13087 AAA domain UP12_03295 PF13195 Protein of unknown function (DUF4011) UP12_03295 PF13086 AAA domain UP12_03300 PF13302 Acetyltransferase (GNAT) domain UP12_03305 PF07690 Major Facilitator Superfamily UP12_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_03310 PF03466 LysR substrate binding domain UP12_03315 PF00860 Permease family UP12_03325 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_03330 PF14044 NETI protein UP12_03335 PF00731 AIR carboxylase UP12_03340 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain UP12_03340 PF02222 ATP-grasp domain UP12_03345 PF00206 Lyase UP12_03345 PF10397 Adenylosuccinate lyase C-terminus UP12_03350 PF01259 SAICAR synthetase UP12_03355 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase UP12_03365 PF00586 AIR synthase related protein, N-terminal domain UP12_03365 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain UP12_03365 PF02769 AIR synthase related protein, C-terminal domain UP12_03370 PF00156 Phosphoribosyl transferase domain UP12_03375 PF00586 AIR synthase related protein, N-terminal domain UP12_03375 PF02769 AIR synthase related protein, C-terminal domain UP12_03380 PF00551 Formyl transferase UP12_03385 PF01808 AICARFT/IMPCHase bienzyme UP12_03385 PF02142 MGS-like domain UP12_03390 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain UP12_03390 PF02843 Phosphoribosylglycinamide synthetase, C domain UP12_03390 PF02844 Phosphoribosylglycinamide synthetase, N domain UP12_03410 PF00202 Aminotransferase class-III UP12_03415 PF01144 Coenzyme A transferase UP12_03420 PF01144 Coenzyme A transferase UP12_03425 PF01546 Peptidase family M20/M25/M40 UP12_03425 PF07687 Peptidase dimerisation domain UP12_03430 PF11127 Protein of unknown function (DUF2892) UP12_03435 PF01979 Amidohydrolase family UP12_03435 PF13382 Adenine deaminase C-terminal domain UP12_03440 PF01371 Trp repressor protein UP12_03450 PF01645 Conserved region in glutamate synthase UP12_03465 PF01884 PcrB family UP12_03470 PF13361 UvrD-like helicase C-terminal domain UP12_03470 PF00580 UvrD/REP helicase N-terminal domain UP12_03475 PF03119 NAD-dependent DNA ligase C4 zinc finger domain UP12_03475 PF03120 NAD-dependent DNA ligase OB-fold domain UP12_03475 PF12826 Helix-hairpin-helix motif UP12_03475 PF00533 BRCA1 C Terminus (BRCT) domain UP12_03475 PF01653 NAD-dependent DNA ligase adenylation domain UP12_03480 PF07537 CamS sex pheromone cAM373 precursor UP12_03490 PF00501 AMP-binding enzyme UP12_03490 PF13193 AMP-binding enzyme C-terminal domain UP12_03490 PF00668 Condensation domain UP12_03490 PF00550 Phosphopantetheine attachment site UP12_03495 PF00144 Beta-lactamase UP12_03505 PF00975 Thioesterase domain UP12_03510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UP12_03510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UP12_03525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_03525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_03525 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_03530 PF00501 AMP-binding enzyme UP12_03530 PF13193 AMP-binding enzyme C-terminal domain UP12_03530 PF00668 Condensation domain UP12_03530 PF00550 Phosphopantetheine attachment site UP12_03535 PF00668 Condensation domain UP12_03535 PF00501 AMP-binding enzyme UP12_03535 PF13193 AMP-binding enzyme C-terminal domain UP12_03535 PF00550 Phosphopantetheine attachment site UP12_03540 PF00668 Condensation domain UP12_03540 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_03540 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_03540 PF16197 Ketoacyl-synthetase C-terminal extension UP12_03540 PF00550 Phosphopantetheine attachment site UP12_03540 PF00698 Acyl transferase domain UP12_03545 PF14765 Polyketide synthase dehydratase UP12_03545 PF00550 Phosphopantetheine attachment site UP12_03545 PF08659 KR domain UP12_03545 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_03545 PF16197 Ketoacyl-synthetase C-terminal extension UP12_03545 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_03550 PF00550 Phosphopantetheine attachment site UP12_03550 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_03550 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_03550 PF16197 Ketoacyl-synthetase C-terminal extension UP12_03550 PF00668 Condensation domain UP12_03550 PF00698 Acyl transferase domain UP12_03555 PF01636 Phosphotransferase enzyme family UP12_03560 PF00245 Alkaline phosphatase UP12_03565 PF02308 MgtC family UP12_03570 PF00474 Sodium:solute symporter family UP12_03575 PF02686 Glu-tRNAGln amidotransferase C subunit UP12_03580 PF01425 Amidase UP12_03585 PF02637 GatB domain UP12_03585 PF02934 GatB/GatE catalytic domain UP12_03590 PF00440 Bacterial regulatory proteins, tetR family UP12_03595 PF00873 AcrB/AcrD/AcrF family UP12_03600 PF01156 Inosine-uridine preferring nucleoside hydrolase UP12_03605 PF00781 Diacylglycerol kinase catalytic domain UP12_03610 PF05958 tRNA (Uracil-5-)-methyltransferase UP12_03610 PF01938 TRAM domain UP12_03630 PF01207 Dihydrouridine synthase (Dus) UP12_03640 PF01418 Helix-turn-helix domain, rpiR family UP12_03640 PF01380 SIS domain UP12_03645 PF02378 Phosphotransferase system, EIIC UP12_03645 PF00367 phosphotransferase system, EIIB UP12_03650 PF02056 Family 4 glycosyl hydrolase UP12_03650 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_03660 PF02082 Transcriptional regulator UP12_03665 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_03675 PF13021 Domain of unknown function (DUF3885) UP12_03680 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_03680 PF02056 Family 4 glycosyl hydrolase UP12_03685 PF01380 SIS domain UP12_03685 PF01418 Helix-turn-helix domain, rpiR family UP12_03690 PF07690 Major Facilitator Superfamily UP12_03700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_03700 PF03466 LysR substrate binding domain UP12_03710 PF13039 Protein of unknown function (DUF3900) UP12_03710 PF13037 Domain of unknown function (DUF3898) UP12_03715 PF00483 Nucleotidyl transferase UP12_03720 PF16363 GDP-mannose 4,6 dehydratase UP12_03725 PF03407 Nucleotide-diphospho-sugar transferase UP12_03730 PF00535 Glycosyl transferase family 2 UP12_03735 PF03407 Nucleotide-diphospho-sugar transferase UP12_03740 PF07690 Major Facilitator Superfamily UP12_03745 PF05223 NTF2-like N-terminal transpeptidase domain UP12_03745 PF03717 Penicillin-binding Protein dimerisation domain UP12_03745 PF00905 Penicillin binding protein transpeptidase domain UP12_03750 PF00939 Sodium:sulfate symporter transmembrane region UP12_03765 PF00011 Hsp20/alpha crystallin family UP12_03780 PF13520 Amino acid permease UP12_03785 PF00535 Glycosyl transferase family 2 UP12_03785 PF13181 Tetratricopeptide repeat UP12_03790 PF00005 ABC transporter UP12_03790 PF12848 ABC transporter UP12_03790 PF16326 ABC transporter C-terminal domain UP12_03795 PF13411 MerR HTH family regulatory protein UP12_03800 PF07690 Major Facilitator Superfamily UP12_03805 PF12848 ABC transporter UP12_03805 PF00005 ABC transporter UP12_03810 PF00271 Helicase conserved C-terminal domain UP12_03810 PF00270 DEAD/DEAH box helicase UP12_03815 PF16884 N-terminal domain of oxidoreductase UP12_03815 PF00107 Zinc-binding dehydrogenase UP12_03820 PF11486 Protein of unknown function (DUF3212) UP12_03825 PF11181 Heat induced stress protein YflT UP12_03835 PF00925 GTP cyclohydrolase II UP12_03835 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UP12_03840 PF03781 Sulfatase-modifying factor enzyme 1 UP12_03850 PF01872 RibD C-terminal domain UP12_03850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_03860 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_03860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_03865 PF00072 Response regulator receiver domain UP12_03865 PF08279 HTH domain UP12_03865 PF12431 Transcriptional regulator UP12_03870 PF03401 Tripartite tricarboxylate transporter family receptor UP12_03875 PF03600 Citrate transporter UP12_03885 PF05870 Phenolic acid decarboxylase (PAD) UP12_03890 PF10400 Virulence activator alpha C-term UP12_03890 PF03551 Transcriptional regulator PadR-like family UP12_03895 PF02898 Nitric oxide synthase, oxygenase domain UP12_03900 PF00708 Acylphosphatase UP12_03905 PF03475 3-alpha domain UP12_03905 PF03473 MOSC domain UP12_03910 PF00557 Metallopeptidase family M24 UP12_03915 PF02378 Phosphotransferase system, EIIC UP12_03915 PF00367 phosphotransferase system, EIIB UP12_03920 PF05675 Protein of unknown function (DUF817) UP12_03930 PF14172 Domain of unknown function (DUF4309) UP12_03935 PF00884 Sulfatase UP12_03940 PF00282 Pyridoxal-dependent decarboxylase conserved domain UP12_03945 PF00672 HAMP domain UP12_03945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_03950 PF09350 Domain of unknown function (DUF1992) UP12_03955 PF00367 phosphotransferase system, EIIB UP12_03955 PF02378 Phosphotransferase system, EIIC UP12_03960 PF00128 Alpha amylase, catalytic domain UP12_03960 PF16657 Maltogenic Amylase, C-terminal domain UP12_03965 PF07702 UTRA domain UP12_03965 PF00392 Bacterial regulatory proteins, gntR family UP12_03975 PF02872 5'-nucleotidase, C-terminal domain UP12_03975 PF00149 Calcineurin-like phosphoesterase UP12_03980 PF01965 DJ-1/PfpI family UP12_03985 PF06569 Protein of unknown function (DUF1128) UP12_03990 PF01235 Sodium:alanine symporter family UP12_03995 PF01451 Low molecular weight phosphotyrosine protein phosphatase UP12_04005 PF03631 Virulence factor BrkB UP12_04010 PF07690 Major Facilitator Superfamily UP12_04020 PF01699 Sodium/calcium exchanger protein UP12_04025 PF14167 YfkD-like protein UP12_04030 PF01709 Transcriptional regulator UP12_04040 PF00924 Mechanosensitive ion channel UP12_04045 PF04055 Radical SAM superfamily UP12_04045 PF08756 YfkB-like domain UP12_04055 PF01522 Polysaccharide deacetylase UP12_04065 PF01544 CorA-like Mg2+ transporter protein UP12_04075 PF00730 HhH-GPD superfamily base excision DNA repair protein UP12_04080 PF05958 tRNA (Uracil-5-)-methyltransferase UP12_04080 PF01938 TRAM domain UP12_04085 PF00440 Bacterial regulatory proteins, tetR family UP12_04085 PF18665 Tetracyclin repressor-like, C-terminal domain UP12_04105 PF07739 TipAS antibiotic-recognition domain UP12_04105 PF13411 MerR HTH family regulatory protein UP12_04110 PF07690 Major Facilitator Superfamily UP12_04125 PF03129 Anticodon binding domain UP12_04125 PF02824 TGS domain UP12_04125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_04125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UP12_04165 PF00893 Small Multidrug Resistance protein UP12_04170 PF00893 Small Multidrug Resistance protein UP12_04175 PF17934 Tetracyclin repressor-like, C-terminal domain UP12_04175 PF00440 Bacterial regulatory proteins, tetR family UP12_04190 PF00657 GDSL-like Lipase/Acylhydrolase UP12_04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_04200 PF12833 Helix-turn-helix domain UP12_04200 PF01497 Periplasmic binding protein UP12_04205 PF01497 Periplasmic binding protein UP12_04210 PF00664 ABC transporter transmembrane region UP12_04210 PF00005 ABC transporter UP12_04215 PF02694 Uncharacterised BCR, YnfA/UPF0060 family UP12_04220 PF04545 Sigma-70, region 4 UP12_04220 PF04542 Sigma-70 region 2 UP12_04235 PF00107 Zinc-binding dehydrogenase UP12_04235 PF08240 Alcohol dehydrogenase GroES-like domain UP12_04240 PF12867 DinB superfamily UP12_04250 PF01047 MarR family UP12_04255 PF03706 Lysylphosphatidylglycerol synthase TM region UP12_04255 PF09924 Uncharacterised conserved protein (DUF2156) UP12_04270 PF18801 response regulator aspartate phosphatase H, N terminal UP12_04280 PF00881 Nitroreductase family UP12_04290 PF01370 NAD dependent epimerase/dehydratase family UP12_04290 PF08338 Domain of unknown function (DUF1731) UP12_04295 PF02631 RecX family UP12_04300 PF08838 Protein of unknown function (DUF1811) UP12_04305 PF08176 Small acid-soluble spore protein K family UP12_04310 PF14043 WVELL protein UP12_04315 PF00535 Glycosyl transferase family 2 UP12_04320 PF09586 Bacterial membrane protein YfhO UP12_04325 PF01494 FAD binding domain UP12_04340 PF00190 Cupin UP12_04345 PF04545 Sigma-70, region 4 UP12_04355 PF04307 LexA-binding, inner membrane-associated putative hydrolase UP12_04360 PF00730 HhH-GPD superfamily base excision DNA repair protein UP12_04360 PF14815 NUDIX domain UP12_04375 PF04259 Small, acid-soluble spore protein, gamma-type UP12_04385 PF04167 Protein of unknown function (DUF402) UP12_04390 PF00664 ABC transporter transmembrane region UP12_04390 PF00005 ABC transporter UP12_04395 PF00005 ABC transporter UP12_04395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_04400 PF00005 ABC transporter UP12_04400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_04405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_04420 PF06081 Aromatic acid exporter family member 1 UP12_04425 PF00202 Aminotransferase class-III UP12_04430 PF00578 AhpC/TSA family UP12_04435 PF01475 Ferric uptake regulator family UP12_04440 PF11023 Zinc-ribbon containing domain UP12_04445 PF14540 Nucleotidyltransferase-like UP12_04445 PF18576 Helix-turn-helix domain UP12_04590 PF00884 Sulfatase UP12_04595 PF10502 Signal peptidase, peptidase S26 UP12_04600 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_04610 PF00005 ABC transporter UP12_04645 PF08331 Domain of unknown function (DUF1730) UP12_04650 PF12671 Putative amidase domain UP12_04655 PF00588 SpoU rRNA Methylase family UP12_04660 PF15493 Domain of unknown function, YrpD UP12_04665 PF08298 PrkA AAA domain UP12_04665 PF06798 PrkA serine protein kinase C-terminal domain UP12_04670 PF04285 Protein of unknown function (DUF444) UP12_04680 PF07690 Major Facilitator Superfamily UP12_04685 PF03358 NADPH-dependent FMN reductase UP12_04695 PF00313 'Cold-shock' DNA-binding domain UP12_04700 PF07694 5TMR of 5TMR-LYT UP12_04700 PF00990 Diguanylate cyclase, GGDEF domain UP12_04715 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_04725 PF07875 Coat F domain UP12_04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_04730 PF13188 PAS domain UP12_04730 PF00989 PAS fold UP12_04730 PF13426 PAS domain UP12_04730 PF00512 His Kinase A (phospho-acceptor) domain UP12_04735 PF00149 Calcineurin-like phosphoesterase UP12_04735 PF02872 5'-nucleotidase, C-terminal domain UP12_04735 PF00746 LPXTG cell wall anchor motif UP12_04735 PF00565 Staphylococcal nuclease homologue UP12_04740 PF04203 Sortase domain UP12_04745 PF00849 RNA pseudouridylate synthase UP12_04745 PF01479 S4 domain UP12_04755 PF13419 Haloacid dehalogenase-like hydrolase UP12_04760 PF00795 Carbon-nitrogen hydrolase UP12_04760 PF00583 Acetyltransferase (GNAT) family UP12_04775 PF05651 Putative sugar diacid recognition UP12_04775 PF17853 GGDEF-like domain UP12_04775 PF13556 PucR C-terminal helix-turn-helix domain UP12_04780 PF00202 Aminotransferase class-III UP12_04785 PF04309 Glycerol-3-phosphate responsive antiterminator UP12_04790 PF00230 Major intrinsic protein UP12_04795 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UP12_04795 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UP12_04800 PF16901 C-terminal domain of alpha-glycerophosphate oxidase UP12_04800 PF01266 FAD dependent oxidoreductase UP12_04805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I UP12_04805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II UP12_04805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III UP12_04805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain UP12_04810 PF13185 GAF domain UP12_04810 PF07730 Histidine kinase UP12_04815 PF00196 Bacterial regulatory proteins, luxR family UP12_04815 PF00072 Response regulator receiver domain UP12_04825 PF14148 YhdB-like protein UP12_04830 PF13028 Protein of unknown function (DUF3889) UP12_04835 PF06628 Catalase-related immune-responsive UP12_04835 PF00199 Catalase UP12_04840 PF02082 Transcriptional regulator UP12_04845 PF00970 Oxidoreductase FAD-binding domain UP12_04845 PF00042 Globin UP12_04845 PF00175 Oxidoreductase NAD-binding domain UP12_04850 PF04293 SpoVR like protein UP12_04855 PF00245 Alkaline phosphatase UP12_04860 PF01476 LysM domain UP12_04860 PF00877 NlpC/P60 family UP12_04865 PF17453 Sigma-M inhibitor UP12_04870 PF13800 Sigma factor regulator N-terminal UP12_04870 PF13791 Sigma factor regulator C-terminal UP12_04875 PF04542 Sigma-70 region 2 UP12_04875 PF08281 Sigma-70, region 4 UP12_04880 PF01553 Acyltransferase UP12_04885 PF00571 CBS domain UP12_04885 PF01595 Cyclin M transmembrane N-terminal domain UP12_04885 PF03471 Transporter associated domain UP12_04890 PF13411 MerR HTH family regulatory protein UP12_04895 PF01595 Cyclin M transmembrane N-terminal domain UP12_04895 PF03471 Transporter associated domain UP12_04895 PF00571 CBS domain UP12_04905 PF02537 CrcB-like protein, Camphor Resistance (CrcB) UP12_04910 PF02537 CrcB-like protein, Camphor Resistance (CrcB) UP12_04930 PF01522 Polysaccharide deacetylase UP12_04935 PF01063 Amino-transferase class IV UP12_04940 PF00582 Universal stress protein family UP12_04945 PF00664 ABC transporter transmembrane region UP12_04945 PF00005 ABC transporter UP12_04950 PF00664 ABC transporter transmembrane region UP12_04950 PF00005 ABC transporter UP12_04955 PF13460 NAD(P)H-binding UP12_04960 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_04965 PF00005 ABC transporter UP12_04965 PF03459 TOBE domain UP12_04965 PF17912 MalK OB fold domain UP12_04970 PF13556 PucR C-terminal helix-turn-helix domain UP12_04975 PF17277 Family of unknown function (DUF5342) UP12_04980 PF14398 YheC/D like ATP-grasp UP12_04985 PF14398 YheC/D like ATP-grasp UP12_04990 PF04286 Protein of unknown function (DUF445) UP12_04995 PF06133 Control of competence regulator ComK, YlbF/YmcA UP12_05005 PF04055 Radical SAM superfamily UP12_05010 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) UP12_05015 PF00999 Sodium/hydrogen exchanger family UP12_05020 PF02080 TrkA-C domain UP12_05030 PF00378 Enoyl-CoA hydratase/isomerase UP12_05035 PF14120 YhzD-like protein UP12_05040 PF00149 Calcineurin-like phosphoesterase UP12_05045 PF13514 AAA domain UP12_05050 PF01966 HD domain UP12_05055 PF14147 Sporulation protein YhaL UP12_05065 PF09680 Family of unknown function UP12_05070 PF09680 Family of unknown function UP12_05075 PF11667 Putative zincin peptidase UP12_05080 PF08963 Protein of unknown function (DUF1878) UP12_05085 PF01047 MarR family UP12_05090 PF12732 YtxH-like protein UP12_05100 PF17099 Tryptophan transporter TrpP UP12_05105 PF00266 Aminotransferase class-V UP12_05110 PF01230 HIT domain UP12_05115 PF00005 ABC transporter UP12_05120 PF05975 Bacterial ABC transporter protein EcsB UP12_05125 PF12787 EcsC protein family UP12_05130 PF07687 Peptidase dimerisation domain UP12_05130 PF01546 Peptidase family M20/M25/M40 UP12_05140 PF03992 Antibiotic biosynthesis monooxygenase UP12_05145 PF00905 Penicillin binding protein transpeptidase domain UP12_05145 PF00912 Transglycosylase UP12_05150 PF01208 Uroporphyrinogen decarboxylase (URO-D) UP12_05165 PF17932 Tetracyclin repressor-like, C-terminal domain UP12_05165 PF00440 Bacterial regulatory proteins, tetR family UP12_05175 PF05343 M42 glutamyl aminopeptidase UP12_05180 PF00375 Sodium:dicarboxylate symporter family UP12_05185 PF12706 Beta-lactamase superfamily domain UP12_05190 PF10437 Bacterial lipoate protein ligase C-terminus UP12_05190 PF03099 Biotin/lipoate A/B protein ligase family UP12_05195 PF00501 AMP-binding enzyme UP12_05195 PF13193 AMP-binding enzyme C-terminal domain UP12_05205 PF01435 Peptidase family M48 UP12_05205 PF16491 CAAX prenyl protease N-terminal, five membrane helices UP12_05210 PF05922 Peptidase inhibitor I9 UP12_05210 PF00082 Subtilase family UP12_05215 PF00300 Histidine phosphatase superfamily (branch 1) UP12_05220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_05225 PF00355 Rieske [2Fe-2S] domain UP12_05225 PF01266 FAD dependent oxidoreductase UP12_05235 PF08858 IDEAL domain UP12_05240 PF06338 ComK protein UP12_05245 PF01168 Alanine racemase, N-terminal domain UP12_05245 PF14031 Putative serine dehydratase domain UP12_05255 PF00155 Aminotransferase class I and II UP12_05255 PF00392 Bacterial regulatory proteins, gntR family UP12_05260 PF07690 Major Facilitator Superfamily UP12_05265 PF01337 Barstar (barnase inhibitor) UP12_05270 PF03816 Cell envelope-related transcriptional attenuator domain UP12_05280 PF09335 SNARE associated Golgi protein UP12_05285 PF10502 Signal peptidase, peptidase S26 UP12_05290 PF05145 Transition state regulatory protein AbrB UP12_05300 PF01435 Peptidase family M48 UP12_05305 PF07681 DoxX UP12_05310 PF02915 Rubrerythrin UP12_05315 PF12705 PD-(D/E)XK nuclease superfamily UP12_05320 PF13361 UvrD-like helicase C-terminal domain UP12_05320 PF12705 PD-(D/E)XK nuclease superfamily UP12_05320 PF00580 UvrD/REP helicase N-terminal domain UP12_05325 PF00149 Calcineurin-like phosphoesterase UP12_05325 PF12320 Type 5 capsule protein repressor C-terminal domain UP12_05330 PF13476 AAA domain UP12_05340 PF10676 Spore germination protein gerPA/gerPF UP12_05345 PF10970 Spore germination protein GerPE UP12_05355 PF10737 Spore germination protein GerPC UP12_05360 PF10803 Spore germination GerPB UP12_05365 PF10676 Spore germination protein gerPA/gerPF UP12_05375 PF08757 CotH kinase protein UP12_05385 PF01557 Fumarylacetoacetate (FAA) hydrolase family UP12_05390 PF07457 Protein of unknown function (DUF1516) UP12_05395 PF10949 Protein of unknown function (DUF2777) UP12_05400 PF00733 Asparagine synthase UP12_05400 PF13537 Glutamine amidotransferase domain UP12_05405 PF01593 Flavin containing amine oxidoreductase UP12_05420 PF01554 MatE UP12_05425 PF02311 AraC-like ligand binding domain UP12_05425 PF12833 Helix-turn-helix domain UP12_05450 PF00202 Aminotransferase class-III UP12_05455 PF00282 Pyridoxal-dependent decarboxylase conserved domain UP12_05460 PF04183 IucA / IucC family UP12_05460 PF06276 Ferric iron reductase FhuF-like transporter UP12_05470 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) UP12_05475 PF06276 Ferric iron reductase FhuF-like transporter UP12_05475 PF04183 IucA / IucC family UP12_05485 PF02310 B12 binding domain UP12_05485 PF02965 Vitamin B12 dependent methionine synthase, activation domain UP12_05485 PF00809 Pterin binding enzyme UP12_05485 PF02574 Homocysteine S-methyltransferase UP12_05485 PF02607 B12 binding domain UP12_05490 PF02219 Methylenetetrahydrofolate reductase UP12_05490 PF02574 Homocysteine S-methyltransferase UP12_05495 PF04461 Protein of unknown function (DUF520) UP12_05500 PF13509 S1 domain UP12_05500 PF17783 CvfB-like winged helix domain UP12_05510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_05510 PF00672 HAMP domain UP12_05510 PF02743 Cache domain UP12_05515 PF02645 Uncharacterised protein, DegV family COG1307 UP12_05520 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_05520 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_05525 PF12690 Intracellular proteinase inhibitor UP12_05530 PF12758 Protein of unknown function (DUF3813) UP12_05545 PF00326 Prolyl oligopeptidase family UP12_05550 PF01883 Iron-sulfur cluster assembly protein UP12_05555 PF01565 FAD binding domain UP12_05560 PF07690 Major Facilitator Superfamily UP12_05565 PF02774 Semialdehyde dehydrogenase, dimerisation domain UP12_05565 PF01118 Semialdehyde dehydrogenase, NAD binding domain UP12_05570 PF01960 ArgJ family UP12_05575 PF00696 Amino acid kinase family UP12_05580 PF00202 Aminotransferase class-III UP12_05585 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_05585 PF00117 Glutamine amidotransferase class-I UP12_05590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_05590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_05595 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UP12_05595 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UP12_05600 PF14168 YjzC-like protein UP12_05605 PF07690 Major Facilitator Superfamily UP12_05610 PF11151 Protein of unknown function (DUF2929) UP12_05625 PF02608 ABC transporter substrate-binding protein PnrA-like UP12_05630 PF10815 ComZ UP12_05640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal UP12_05640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III UP12_05645 PF02801 Beta-ketoacyl synthase, C-terminal domain UP12_05645 PF00109 Beta-ketoacyl synthase, N-terminal domain UP12_05650 PF10026 Predicted Zn-dependent protease (DUF2268) UP12_05655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_05655 PF00005 ABC transporter UP12_05660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_05660 PF00005 ABC transporter UP12_05665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_05670 PF00528 Binding-protein-dependent transport system inner membrane component UP12_05675 PF00528 Binding-protein-dependent transport system inner membrane component UP12_05675 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_05680 PF12227 Protein of unknown function (DUF3603) UP12_05685 PF00579 tRNA synthetases class I (W and Y) UP12_05690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_05695 PF00528 Binding-protein-dependent transport system inner membrane component UP12_05700 PF00528 Binding-protein-dependent transport system inner membrane component UP12_05700 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_05705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_05705 PF00005 ABC transporter UP12_05710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_05710 PF00005 ABC transporter UP12_05720 PF13508 Acetyltransferase (GNAT) domain UP12_05725 PF03960 ArsC family UP12_05730 PF03741 Integral membrane protein TerC family UP12_05735 PF05389 Negative regulator of genetic competence (MecA) UP12_05740 PF13396 Phospholipase_D-nuclease N-terminal UP12_05740 PF13091 PLD-like domain UP12_05750 PF01432 Peptidase family M3 UP12_05750 PF08439 Oligopeptidase F UP12_05765 PF01152 Bacterial-like globin UP12_05770 PF01464 Transglycosylase SLT domain UP12_05775 PF01928 CYTH domain UP12_05785 PF04607 Region found in RelA / SpoT proteins UP12_05790 PF01513 ATP-NAD kinase UP12_05795 PF00849 RNA pseudouridylate synthase UP12_05800 PF00149 Calcineurin-like phosphoesterase UP12_05805 PF02080 TrkA-C domain UP12_05805 PF02254 TrkA-N domain UP12_05805 PF00999 Sodium/hydrogen exchanger family UP12_05810 PF03070 TENA/THI-4/PQQC family UP12_05815 PF02581 Thiamine monophosphate synthase UP12_05820 PF01266 FAD dependent oxidoreductase UP12_05825 PF02597 ThiS family UP12_05830 PF05690 Thiazole biosynthesis protein ThiG UP12_05835 PF00899 ThiF family UP12_05840 PF08543 Phosphomethylpyrimidine kinase UP12_05850 PF14153 Spore coat protein CotO UP12_05855 PF10612 Spore coat protein Z UP12_05860 PF10612 Spore coat protein Z UP12_05865 PF07552 Spore Coat Protein X and V domain UP12_05875 PF07552 Spore Coat Protein X and V domain UP12_05880 PF07098 Protein of unknown function (DUF1360) UP12_05895 PF14069 Stage VI sporulation protein F UP12_05900 PF13361 UvrD-like helicase C-terminal domain UP12_05900 PF00580 UvrD/REP helicase N-terminal domain UP12_05910 PF13673 Acetyltransferase (GNAT) domain UP12_05920 PF00756 Putative esterase UP12_05925 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_05930 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_05940 PF00107 Zinc-binding dehydrogenase UP12_05940 PF08240 Alcohol dehydrogenase GroES-like domain UP12_05950 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit UP12_05960 PF00669 Bacterial flagellin N-terminal helical region UP12_05960 PF00700 Bacterial flagellin C-terminal helical region UP12_05970 PF07690 Major Facilitator Superfamily UP12_05975 PF00701 Dihydrodipicolinate synthetase family UP12_05980 PF03466 LysR substrate binding domain UP12_05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_05990 PF00302 Chloramphenicol acetyltransferase UP12_05995 PF13176 Tetratricopeptide repeat UP12_05995 PF18801 response regulator aspartate phosphatase H, N terminal UP12_06010 PF10852 Protein of unknown function (DUF2651) UP12_06020 PF01636 Phosphotransferase enzyme family UP12_06025 PF03466 LysR substrate binding domain UP12_06025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_06030 PF01177 Asp/Glu/Hydantoin racemase UP12_06040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_06040 PF03466 LysR substrate binding domain UP12_06045 PF07690 Major Facilitator Superfamily UP12_06070 PF18801 response regulator aspartate phosphatase H, N terminal UP12_06090 PF00842 Alanine racemase, C-terminal domain UP12_06090 PF01168 Alanine racemase, N-terminal domain UP12_06095 PF00107 Zinc-binding dehydrogenase UP12_06095 PF08240 Alcohol dehydrogenase GroES-like domain UP12_06110 PF00669 Bacterial flagellin N-terminal helical region UP12_06110 PF00700 Bacterial flagellin C-terminal helical region UP12_06115 PF00669 Bacterial flagellin N-terminal helical region UP12_06115 PF00700 Bacterial flagellin C-terminal helical region UP12_06120 PF00700 Bacterial flagellin C-terminal helical region UP12_06120 PF00669 Bacterial flagellin N-terminal helical region UP12_06125 PF00669 Bacterial flagellin N-terminal helical region UP12_06125 PF00700 Bacterial flagellin C-terminal helical region UP12_06130 PF01494 FAD binding domain UP12_06145 PF05908 Poly-gamma-glutamate hydrolase UP12_06150 PF06114 IrrE N-terminal-like domain UP12_06155 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_06155 PF01471 Putative peptidoglycan binding domain UP12_06155 PF01476 LysM domain UP12_06160 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system UP12_06165 PF14171 Toxin SpoIISA, type II toxin-antitoxin system UP12_06170 PF01384 Phosphate transporter family UP12_06175 PF01865 Protein of unknown function DUF47 UP12_06195 PF03611 PTS system sugar-specific permease component UP12_06210 PF00107 Zinc-binding dehydrogenase UP12_06210 PF08240 Alcohol dehydrogenase GroES-like domain UP12_06215 PF00676 Dehydrogenase E1 component UP12_06220 PF00364 Biotin-requiring enzyme UP12_06220 PF02779 Transketolase, pyrimidine binding domain UP12_06220 PF02780 Transketolase, C-terminal domain UP12_06225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_06225 PF02817 e3 binding domain UP12_06225 PF00364 Biotin-requiring enzyme UP12_06230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_06230 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_06245 PF04198 Putative sugar-binding domain UP12_06255 PF13520 Amino acid permease UP12_06260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_06265 PF13180 PDZ domain UP12_06270 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_06270 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_06275 PF04951 D-aminopeptidase UP12_06280 PF00528 Binding-protein-dependent transport system inner membrane component UP12_06285 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_06285 PF00528 Binding-protein-dependent transport system inner membrane component UP12_06290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_06290 PF00005 ABC transporter UP12_06295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_06300 PF17676 LD-carboxypeptidase C-terminal domain UP12_06300 PF02016 LD-carboxypeptidase N-terminal domain UP12_06305 PF13378 Enolase C-terminal domain-like UP12_06305 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UP12_06310 PF00877 NlpC/P60 family UP12_06315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_06315 PF00005 ABC transporter UP12_06325 PF03061 Thioesterase superfamily UP12_06345 PF13302 Acetyltransferase (GNAT) domain UP12_06350 PF02805 Metal binding domain of Ada UP12_06350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain UP12_06350 PF12833 Helix-turn-helix domain UP12_06350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain UP12_06355 PF00893 Small Multidrug Resistance protein UP12_06360 PF00893 Small Multidrug Resistance protein UP12_06370 PF01842 ACT domain UP12_06370 PF00551 Formyl transferase UP12_06375 PF00696 Amino acid kinase family UP12_06375 PF01472 PUA domain UP12_06380 PF00171 Aldehyde dehydrogenase family UP12_06385 PF18801 response regulator aspartate phosphatase H, N terminal UP12_06395 PF02566 OsmC-like protein UP12_06400 PF01047 MarR family UP12_06405 PF02566 OsmC-like protein UP12_06410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_06415 PF01717 Cobalamin-independent synthase, Catalytic domain UP12_06415 PF08267 Cobalamin-independent synthase, N-terminal domain UP12_06420 PF00082 Subtilase family UP12_06425 PF00072 Response regulator receiver domain UP12_06425 PF00486 Transcriptional regulatory protein, C terminal UP12_06430 PF00512 His Kinase A (phospho-acceptor) domain UP12_06430 PF00672 HAMP domain UP12_06430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_06435 PF03413 Peptidase propeptide and YPEB domain UP12_06440 PF03413 Peptidase propeptide and YPEB domain UP12_06450 PF00571 CBS domain UP12_06450 PF01769 Divalent cation transporter UP12_06450 PF03448 MgtE intracellular N domain UP12_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_06460 PF03466 LysR substrate binding domain UP12_06470 PF13411 MerR HTH family regulatory protein UP12_06480 PF01047 MarR family UP12_06485 PF00563 EAL domain UP12_06485 PF03707 Bacterial signalling protein N terminal repeat UP12_06485 PF00990 Diguanylate cyclase, GGDEF domain UP12_06490 PF09335 SNARE associated Golgi protein UP12_06495 PF03741 Integral membrane protein TerC family UP12_06500 PF04542 Sigma-70 region 2 UP12_06505 PF12791 Anti-sigma factor N-terminus UP12_06510 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_06515 PF08876 Domain of unknown function (DUF1836) UP12_06520 PF01435 Peptidase family M48 UP12_06525 PF02386 Cation transport protein UP12_06530 PF04239 Protein of unknown function (DUF421) UP12_06540 PF01757 Acyltransferase family UP12_06545 PF13426 PAS domain UP12_06545 PF00989 PAS fold UP12_06545 PF00512 His Kinase A (phospho-acceptor) domain UP12_06545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_06545 PF13188 PAS domain UP12_06550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain UP12_06550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain UP12_06555 PF01008 Initiation factor 2 subunit family UP12_06560 PF01636 Phosphotransferase enzyme family UP12_06565 PF00155 Aminotransferase class I and II UP12_06570 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain UP12_06570 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain UP12_06580 PF00596 Class II Aldolase and Adducin N-terminal domain UP12_06585 PF03079 ARD/ARD' family UP12_06590 PF09388 Spo0E like sporulation regulatory protein UP12_06595 PF02743 Cache domain UP12_06595 PF00512 His Kinase A (phospho-acceptor) domain UP12_06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_06600 PF01047 MarR family UP12_06605 PF00691 OmpA family UP12_06605 PF13677 Membrane MotB of proton-channel complex MotA/MotB UP12_06610 PF01618 MotA/TolQ/ExbB proton channel family UP12_06615 PF07724 AAA domain (Cdc48 subfamily) UP12_06615 PF17871 AAA lid domain UP12_06615 PF00004 ATPase family associated with various cellular activities (AAA) UP12_06615 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_06625 PF06508 Queuosine biosynthesis protein QueC UP12_06630 PF01242 6-pyruvoyl tetrahydropterin synthase UP12_06635 PF04055 Radical SAM superfamily UP12_06640 PF14489 QueF-like protein UP12_06655 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) UP12_06665 PF07486 Cell Wall Hydrolase UP12_06670 PF01943 Polysaccharide biosynthesis protein UP12_06675 PF00578 AhpC/TSA family UP12_06685 PF01321 Creatinase/Prolidase N-terminal domain UP12_06685 PF00557 Metallopeptidase family M24 UP12_06690 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family UP12_06690 PF00356 Bacterial regulatory proteins, lacI family UP12_06695 PF03123 CAT RNA binding domain UP12_06695 PF00874 PRD domain UP12_06700 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_06700 PF00367 phosphotransferase system, EIIB UP12_06700 PF02378 Phosphotransferase system, EIIC UP12_06705 PF00381 PTS HPr component phosphorylation site UP12_06710 PF05524 PEP-utilising enzyme, N-terminal UP12_06710 PF02896 PEP-utilising enzyme, TIM barrel domain UP12_06710 PF00391 PEP-utilising enzyme, mobile domain UP12_06715 PF11132 Transcriptional regulator protein (SplA) UP12_06725 PF00672 HAMP domain UP12_06725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_06725 PF02743 Cache domain UP12_06730 PF00106 short chain dehydrogenase UP12_06735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UP12_06735 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UP12_06740 PF00188 Cysteine-rich secretory protein family UP12_06745 PF03717 Penicillin-binding Protein dimerisation domain UP12_06745 PF00905 Penicillin binding protein transpeptidase domain UP12_06750 PF00512 His Kinase A (phospho-acceptor) domain UP12_06750 PF00989 PAS fold UP12_06750 PF08447 PAS fold UP12_06750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_06755 PF00155 Aminotransferase class I and II UP12_06760 PF16916 Dimerisation domain of Zinc Transporter UP12_06760 PF01545 Cation efflux family UP12_06765 PF06271 RDD family UP12_06775 PF00072 Response regulator receiver domain UP12_06775 PF01584 CheW-like domain UP12_06780 PF14177 YkyB-like protein UP12_06795 PF07690 Major Facilitator Superfamily UP12_06800 PF03734 L,D-transpeptidase catalytic domain UP12_06800 PF01476 LysM domain UP12_06805 PF10518 TAT (twin-arginine translocation) pathway signal sequence UP12_06805 PF00149 Calcineurin-like phosphoesterase UP12_06815 PF10388 EAL-domain associated signalling protein domain UP12_06815 PF00563 EAL domain UP12_06820 PF05067 Manganese containing catalase UP12_06825 PF08796 Protein of unknown function (DUF1797) UP12_06830 PF04308 Ribonuclease H-like UP12_06835 PF14156 Antirepressor AbbA UP12_06845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_06845 PF03466 LysR substrate binding domain UP12_06855 PF00258 Flavodoxin UP12_06865 PF00258 Flavodoxin UP12_06870 PF14602 Hexapeptide repeat of succinyl-transferase UP12_06870 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal UP12_06870 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_06875 PF01546 Peptidase family M20/M25/M40 UP12_06875 PF07687 Peptidase dimerisation domain UP12_06880 PF03698 Uncharacterised protein family (UPF0180) UP12_06885 PF00924 Mechanosensitive ion channel UP12_06890 PF10417 C-terminal domain of 1-Cys peroxiredoxin UP12_06890 PF00578 AhpC/TSA family UP12_06895 PF00578 AhpC/TSA family UP12_06910 PF12804 MobA-like NTP transferase domain UP12_06915 PF00899 ThiF family UP12_06920 PF03454 MoeA C-terminal region (domain IV) UP12_06920 PF03453 MoeA N-terminal region (domain I and II) UP12_06920 PF00994 Probable molybdopterin binding domain UP12_06925 PF03205 Molybdopterin guanine dinucleotide synthesis protein B UP12_06930 PF02391 MoaE protein UP12_06935 PF02597 ThiS family UP12_06950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion UP12_06955 PF00005 ABC transporter UP12_06960 PF12704 MacB-like periplasmic core domain UP12_06960 PF02687 FtsX-like permease family UP12_06965 PF00455 DeoR C terminal sensor domain UP12_06965 PF08220 DeoR-like helix-turn-helix domain UP12_06970 PF00294 pfkB family carbohydrate kinase UP12_06975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_06975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_06980 PF10502 Signal peptidase, peptidase S26 UP12_06990 PF00005 ABC transporter UP12_06990 PF12848 ABC transporter UP12_06995 PF02073 Thermophilic metalloprotease (M29) UP12_07005 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_07005 PF18277 AbrB C-terminal domain UP12_07010 PF00512 His Kinase A (phospho-acceptor) domain UP12_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_07010 PF00989 PAS fold UP12_07015 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like UP12_07020 PF02254 TrkA-N domain UP12_07020 PF02080 TrkA-C domain UP12_07025 PF13382 Adenine deaminase C-terminal domain UP12_07025 PF01979 Amidohydrolase family UP12_07030 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain UP12_07030 PF00753 Metallo-beta-lactamase superfamily UP12_07030 PF17770 Ribonuclease J C-terminal domain UP12_07045 PF01327 Polypeptide deformylase UP12_07060 PF00676 Dehydrogenase E1 component UP12_07065 PF02780 Transketolase, C-terminal domain UP12_07065 PF02779 Transketolase, pyrimidine binding domain UP12_07070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_07070 PF02817 e3 binding domain UP12_07070 PF00364 Biotin-requiring enzyme UP12_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_07075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_07090 PF01276 Orn/Lys/Arg decarboxylase, major domain UP12_07090 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain UP12_07095 PF05256 Uncharacterised protein family (UPF0223) UP12_07100 PF06335 Protein of unknown function (DUF1054) UP12_07110 PF00459 Inositol monophosphatase family UP12_07125 PF08281 Sigma-70, region 4 UP12_07125 PF04542 Sigma-70 region 2 UP12_07130 PF13490 Putative zinc-finger UP12_07150 PF14036 YlaH-like protein UP12_07155 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) UP12_07160 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_07165 PF02562 PhoH-like protein UP12_07165 PF13638 PIN domain UP12_07175 PF04960 Glutaminase UP12_07180 PF07408 Protein of unknown function (DUF1507) UP12_07185 PF01098 Cell cycle protein UP12_07190 PF00364 Biotin-requiring enzyme UP12_07190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_07190 PF02436 Conserved carboxylase domain UP12_07190 PF00289 Biotin carboxylase, N-terminal domain UP12_07190 PF02785 Biotin carboxylase C-terminal domain UP12_07190 PF00682 HMGL-like UP12_07200 PF02628 Cytochrome oxidase assembly protein UP12_07205 PF01040 UbiA prenyltransferase family UP12_07210 PF00116 Cytochrome C oxidase subunit II, periplasmic domain UP12_07210 PF02790 Cytochrome C oxidase subunit II, transmembrane domain UP12_07210 PF00034 Cytochrome c UP12_07215 PF00115 Cytochrome C and Quinol oxidase polypeptide I UP12_07220 PF00510 Cytochrome c oxidase subunit III UP12_07225 PF03626 Prokaryotic Cytochrome C oxidase subunit IV UP12_07230 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) UP12_07235 PF08868 YugN-like family UP12_07240 PF00571 CBS domain UP12_07245 PF14504 CAP-associated N-terminal UP12_07245 PF00188 Cysteine-rich secretory protein family UP12_07250 PF14071 Putative coat protein UP12_07255 PF14003 YlbE-like protein UP12_07265 PF06133 Control of competence regulator ComK, YlbF/YmcA UP12_07270 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) UP12_07280 PF01467 Cytidylyltransferase-like UP12_07285 PF07670 Nucleoside recognition UP12_07290 PF01734 Patatin-like phospholipase UP12_07295 PF13180 PDZ domain UP12_07295 PF05362 Lon protease (S16) C-terminal proteolytic domain UP12_07300 PF05636 HIGH Nucleotidyl Transferase UP12_07305 PF02620 Large ribosomal RNA subunit accumulation protein YceD UP12_07310 PF01783 Ribosomal L32p protein family UP12_07320 PF00583 Acetyltransferase (GNAT) family UP12_07325 PF08546 Ketopantoate reductase PanE/ApbA C terminal UP12_07325 PF02558 Ketopantoate reductase PanE/ApbA UP12_07330 PF10079 Bacillithiol biosynthesis BshC UP12_07335 PF02381 MraZ protein, putative antitoxin-like UP12_07340 PF01795 MraW methylase family UP12_07355 PF03717 Penicillin-binding Protein dimerisation domain UP12_07355 PF03793 PASTA domain UP12_07355 PF00905 Penicillin binding protein transpeptidase domain UP12_07360 PF08245 Mur ligase middle domain UP12_07360 PF02875 Mur ligase family, glutamate ligase domain UP12_07360 PF01225 Mur ligase family, catalytic domain UP12_07365 PF00953 Glycosyl transferase family 4 UP12_07365 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 UP12_07370 PF08245 Mur ligase middle domain UP12_07370 PF02875 Mur ligase family, glutamate ligase domain UP12_07375 PF01098 Cell cycle protein UP12_07380 PF04101 Glycosyltransferase family 28 C-terminal domain UP12_07380 PF03033 Glycosyltransferase family 28 N-terminal domain UP12_07385 PF01565 FAD binding domain UP12_07385 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain UP12_07390 PF08478 POTRA domain, FtsQ-type UP12_07395 PF05949 Bacterial protein of unknown function (DUF881) UP12_07400 PF05949 Bacterial protein of unknown function (DUF881) UP12_07405 PF06947 Protein of unknown function (DUF1290) UP12_07410 PF02491 SHS2 domain inserted in FTSA UP12_07415 PF00091 Tubulin/FtsZ family, GTPase domain UP12_07415 PF12327 FtsZ family, C-terminal domain UP12_07420 PF00082 Subtilase family UP12_07420 PF05922 Peptidase inhibitor I9 UP12_07425 PF03419 Sporulation factor SpoIIGA UP12_07430 PF04545 Sigma-70, region 4 UP12_07430 PF04542 Sigma-70 region 2 UP12_07435 PF04542 Sigma-70 region 2 UP12_07435 PF04539 Sigma-70 region 3 UP12_07435 PF04545 Sigma-70, region 4 UP12_07440 PF04198 Putative sugar-binding domain UP12_07455 PF03608 PTS system enzyme II sorbitol-specific factor UP12_07460 PF07663 Sorbitol phosphotransferase enzyme II C-terminus UP12_07460 PF03612 Sorbitol phosphotransferase enzyme II N-terminus UP12_07465 PF03829 PTS system glucitol/sorbitol-specific IIA component UP12_07470 PF00005 ABC transporter UP12_07475 PF05239 PRC-barrel domain UP12_07485 PF01168 Alanine racemase, N-terminal domain UP12_07490 PF04472 Cell division protein SepF UP12_07495 PF02325 YGGT family UP12_07500 PF17774 Putative RNA-binding domain in YlmH UP12_07500 PF01479 S4 domain UP12_07505 PF05103 DivIVA protein UP12_07510 PF00133 tRNA synthetases class I (I, L, M and V) UP12_07510 PF08264 Anticodon-binding domain of tRNA UP12_07515 PF01258 Prokaryotic dksA/traR C4-type zinc finger UP12_07520 PF01252 Signal peptidase (SPase) II UP12_07525 PF00849 RNA pseudouridylate synthase UP12_07525 PF01479 S4 domain UP12_07530 PF00156 Phosphoribosyl transferase domain UP12_07535 PF00860 Permease family UP12_07540 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain UP12_07540 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain UP12_07545 PF01979 Amidohydrolase family UP12_07550 PF00117 Glutamine amidotransferase class-I UP12_07550 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_07555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_07555 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_07555 PF02142 MGS-like domain UP12_07560 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B UP12_07565 PF01180 Dihydroorotate dehydrogenase UP12_07570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_07575 PF00156 Phosphoribosyl transferase domain UP12_07580 PF01507 Phosphoadenosine phosphosulfate reductase family UP12_07585 PF01384 Phosphate transporter family UP12_07590 PF01747 ATP-sulfurylase UP12_07590 PF14306 PUA-like domain UP12_07600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases UP12_07605 PF01903 CbiX UP12_07620 PF00690 Cation transporter/ATPase, N-terminus UP12_07620 PF00689 Cation transporting ATPase, C-terminus UP12_07625 PF03755 YicC-like family, N-terminal region UP12_07625 PF08340 Domain of unknown function (DUF1732) UP12_07630 PF04025 Domain of unknown function (DUF370) UP12_07635 PF00625 Guanylate kinase UP12_07640 PF01192 RNA polymerase Rpb6 UP12_07645 PF02441 Flavoprotein UP12_07645 PF04127 DNA / pantothenate metabolism flavoprotein UP12_07650 PF18074 Primosomal protein N C-terminal domain UP12_07650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain UP12_07650 PF17764 3′ DNA-binding domain (3′BD) UP12_07650 PF00271 Helicase conserved C-terminal domain UP12_07650 PF04851 Type III restriction enzyme, res subunit UP12_07655 PF01327 Polypeptide deformylase UP12_07660 PF00551 Formyl transferase UP12_07660 PF02911 Formyl transferase, C-terminal domain UP12_07665 PF01029 NusB family UP12_07665 PF01189 16S rRNA methyltransferase RsmB/F UP12_07670 PF04055 Radical SAM superfamily UP12_07680 PF03793 PASTA domain UP12_07680 PF00069 Protein kinase domain UP12_07685 PF16745 RsgA N-terminal domain UP12_07685 PF03193 RsgA GTPase UP12_07690 PF00834 Ribulose-phosphate 3 epimerase family UP12_07695 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain UP12_07695 PF04263 Thiamin pyrophosphokinase, catalytic domain UP12_07700 PF08183 Stage V sporulation protein family UP12_07705 PF00830 Ribosomal L28 family UP12_07710 PF03780 Asp23 family, cell envelope-related function UP12_07715 PF02734 DAK2 domain UP12_07715 PF13684 Dihydroxyacetone kinase family UP12_07720 PF01842 ACT domain UP12_07720 PF03315 Serine dehydratase beta chain UP12_07725 PF03313 Serine dehydratase alpha chain UP12_07730 PF00270 DEAD/DEAH box helicase UP12_07730 PF00271 Helicase conserved C-terminal domain UP12_07730 PF17191 RecG wedge domain UP12_07740 PF02504 Fatty acid synthesis protein UP12_07745 PF00698 Acyl transferase domain UP12_07755 PF00550 Phosphopantetheine attachment site UP12_07760 PF14622 Ribonuclease-III-like UP12_07760 PF00035 Double-stranded RNA binding motif UP12_07765 PF06470 SMC proteins Flexible Hinge Domain UP12_07765 PF02463 RecF/RecN/SMC N terminal domain UP12_07770 PF00448 SRP54-type protein, GTPase domain UP12_07770 PF02881 SRP54-type protein, helical bundle domain UP12_07775 PF04297 Putative helix-turn-helix protein, YlxM / p13 like UP12_07780 PF00448 SRP54-type protein, GTPase domain UP12_07780 PF02881 SRP54-type protein, helical bundle domain UP12_07780 PF02978 Signal peptide binding domain UP12_07785 PF00886 Ribosomal protein S16 UP12_07795 PF11068 YlqD protein UP12_07800 PF01782 RimM N-terminal domain UP12_07800 PF05239 PRC-barrel domain UP12_07805 PF01746 tRNA (Guanine-1)-methyltransferase UP12_07810 PF01245 Ribosomal protein L19 UP12_07815 PF01926 50S ribosome-binding GTPase UP12_07820 PF01351 Ribonuclease HII UP12_07830 PF01312 FlhB HrpN YscU SpaS Family UP12_07835 PF00549 CoA-ligase UP12_07835 PF08442 ATP-grasp domain UP12_07840 PF00549 CoA-ligase UP12_07840 PF02629 CoA binding domain UP12_07845 PF02481 DNA recombination-mediator protein A UP12_07850 PF01396 Topoisomerase DNA binding C4 zinc finger UP12_07850 PF01131 DNA topoisomerase UP12_07850 PF01751 Toprim domain UP12_07855 PF01134 Glucose inhibited division protein A UP12_07860 PF02899 Phage integrase, N-terminal SAM-like domain UP12_07860 PF00589 Phage integrase family UP12_07865 PF00227 Proteasome subunit UP12_07870 PF07724 AAA domain (Cdc48 subfamily) UP12_07870 PF00004 ATPase family associated with various cellular activities (AAA) UP12_07870 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_07875 PF08222 CodY helix-turn-helix domain UP12_07875 PF06018 CodY GAF-like domain UP12_07880 PF00460 Flagella basal body rod protein UP12_07885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_07885 PF00460 Flagella basal body rod protein UP12_07890 PF02049 Flagellar hook-basal body complex protein FliE UP12_07895 PF01514 Secretory protein of YscJ/FliF family UP12_07895 PF08345 Flagellar M-ring protein C-terminal UP12_07900 PF01706 FliG C-terminal domain UP12_07900 PF14842 FliG N-terminal domain UP12_07900 PF14841 FliG middle domain UP12_07905 PF02108 Flagellar assembly protein FliH UP12_07910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_07910 PF02874 ATP synthase alpha/beta family, beta-barrel domain UP12_07910 PF18269 T3SS EscN ATPase C-terminal domain UP12_07915 PF02050 Flagellar FliJ protein UP12_07925 PF02120 Flagellar hook-length control protein FliK UP12_07930 PF03963 Flagellar hook capping protein - N-terminal region UP12_07935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_07935 PF00460 Flagella basal body rod protein UP12_07940 PF06289 Flagellar and Swarming motility proteins UP12_07945 PF03748 Flagellar basal body-associated protein FliL UP12_07950 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UP12_07950 PF02154 Flagellar motor switch protein FliM UP12_07955 PF04509 CheC-like family UP12_07955 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term UP12_07960 PF00072 Response regulator receiver domain UP12_07965 PF04347 Flagellar biosynthesis protein, FliO UP12_07970 PF00813 FliP family UP12_07975 PF01313 Bacterial export proteins, family 3 UP12_07980 PF01311 Bacterial export proteins, family 1 UP12_07985 PF01312 FlhB HrpN YscU SpaS Family UP12_07990 PF00771 FHIPEP family UP12_07995 PF00448 SRP54-type protein, GTPase domain UP12_08000 PF10609 NUBPL iron-transfer P-loop NTPase UP12_08005 PF01339 CheB methylesterase UP12_08005 PF00072 Response regulator receiver domain UP12_08010 PF01584 CheW-like domain UP12_08010 PF02895 Signal transducing histidine kinase, homodimeric domain UP12_08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_08010 PF01627 Hpt domain UP12_08010 PF07194 P2 response regulator binding domain UP12_08015 PF01584 CheW-like domain UP12_08020 PF04509 CheC-like family UP12_08025 PF03975 CheD chemotactic sensory transduction UP12_08030 PF04539 Sigma-70 region 3 UP12_08030 PF04545 Sigma-70, region 4 UP12_08030 PF04542 Sigma-70 region 2 UP12_08040 PF00318 Ribosomal protein S2 UP12_08045 PF00889 Elongation factor TS UP12_08050 PF00696 Amino acid kinase family UP12_08055 PF01765 Ribosome recycling factor UP12_08060 PF01255 Putative undecaprenyl diphosphate synthase UP12_08070 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain UP12_08070 PF13288 DXP reductoisomerase C-terminal domain UP12_08070 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase UP12_08075 PF02163 Peptidase family M50 UP12_08075 PF17820 PDZ domain UP12_08080 PF04073 Aminoacyl-tRNA editing domain UP12_08080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_08080 PF03129 Anticodon binding domain UP12_08085 PF07733 Bacterial DNA polymerase III alpha NTPase domain UP12_08085 PF11490 DNA polymerase III polC-type N-terminus II UP12_08085 PF02811 PHP domain UP12_08085 PF14480 DNA polymerase III polC-type N-terminus I UP12_08085 PF00929 Exonuclease UP12_08085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain UP12_08085 PF14579 Helix-hairpin-helix motif UP12_08090 PF00942 Cellulose binding domain UP12_08090 PF00759 Glycosyl hydrolase family 9 UP12_08095 PF00942 Cellulose binding domain UP12_08095 PF00759 Glycosyl hydrolase family 9 UP12_08095 PF02011 Glycosyl hydrolase family 48 UP12_08110 PF17384 RimP C-terminal SH3 domain UP12_08110 PF02576 RimP N-terminal domain UP12_08115 PF13184 NusA-like KH domain UP12_08115 PF00575 S1 RNA binding domain UP12_08115 PF08529 NusA N-terminal domain UP12_08120 PF04296 Protein of unknown function (DUF448) UP12_08125 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family UP12_08130 PF11987 Translation-initiation factor 2 UP12_08130 PF04760 Translation initiation factor IF-2, N-terminal region UP12_08130 PF00009 Elongation factor Tu GTP binding domain UP12_08135 PF04456 Protein of unknown function (DUF503) UP12_08140 PF02033 Ribosome-binding factor A UP12_08145 PF16198 tRNA pseudouridylate synthase B C-terminal domain UP12_08145 PF01509 TruB family pseudouridylate synthase (N terminal domain) UP12_08150 PF01687 Riboflavin kinase UP12_08150 PF06574 FAD synthetase UP12_08155 PF00312 Ribosomal protein S15 UP12_08160 PF00013 KH domain UP12_08160 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain UP12_08160 PF00575 S1 RNA binding domain UP12_08160 PF03725 3' exoribonuclease family, domain 2 UP12_08160 PF01138 3' exoribonuclease family, domain 1 UP12_08165 PF01522 Polysaccharide deacetylase UP12_08170 PF05193 Peptidase M16 inactive domain UP12_08170 PF00675 Insulinase (Peptidase family M16) UP12_08180 PF05239 PRC-barrel domain UP12_08185 PF16924 Dipicolinate synthase subunit A N-terminal domain UP12_08185 PF01262 Alanine dehydrogenase/PNT, C-terminal domain UP12_08190 PF02441 Flavoprotein UP12_08195 PF02774 Semialdehyde dehydrogenase, dimerisation domain UP12_08195 PF01118 Semialdehyde dehydrogenase, NAD binding domain UP12_08200 PF13840 ACT domain UP12_08200 PF00696 Amino acid kinase family UP12_08205 PF00701 Dihydrodipicolinate synthetase family UP12_08210 PF00753 Metallo-beta-lactamase superfamily UP12_08210 PF17770 Ribonuclease J C-terminal domain UP12_08210 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain UP12_08215 PF00574 Clp protease UP12_08220 PF14035 YlzJ-like protein UP12_08225 PF09397 Ftsk gamma domain UP12_08225 PF01580 FtsK/SpoIIIE family UP12_08225 PF17854 FtsK alpha domain UP12_08230 PF00392 Bacterial regulatory proteins, gntR family UP12_08230 PF07702 UTRA domain UP12_08235 PF07690 Major Facilitator Superfamily UP12_08240 PF03176 MMPL family UP12_08245 PF05193 Peptidase M16 inactive domain UP12_08250 PF05193 Peptidase M16 inactive domain UP12_08250 PF00675 Insulinase (Peptidase family M16) UP12_08260 PF03176 MMPL family UP12_08270 PF11588 Protein of unknown function (DUF3243) UP12_08275 PF11868 Protein of unknown function (DUF3388) UP12_08280 PF13464 Domain of unknown function (DUF4115) UP12_08285 PF01066 CDP-alcohol phosphatidyltransferase UP12_08290 PF02464 Competence-damaged protein UP12_08290 PF18146 Damage-inducible protein CinA KH domain UP12_08290 PF00994 Probable molybdopterin binding domain UP12_08295 PF00154 recA bacterial DNA recombination protein UP12_08300 PF00013 KH domain UP12_08300 PF12072 Domain of unknown function (DUF3552) UP12_08300 PF01966 HD domain UP12_08305 PF13277 YmdB-like protein UP12_08315 PF04232 Stage V sporulation protein S (SpoVS) UP12_08320 PF00873 AcrB/AcrD/AcrF family UP12_08325 PF00107 Zinc-binding dehydrogenase UP12_08325 PF08240 Alcohol dehydrogenase GroES-like domain UP12_08330 PF00155 Aminotransferase class I and II UP12_08340 PF04055 Radical SAM superfamily UP12_08340 PF00919 Uncharacterized protein family UPF0004 UP12_08340 PF01938 TRAM domain UP12_08345 PF06133 Control of competence regulator ComK, YlbF/YmcA UP12_08350 PF10628 Outer spore coat protein E (CotE) UP12_08355 PF05190 MutS family domain IV UP12_08355 PF00488 MutS domain V UP12_08355 PF05188 MutS domain II UP12_08355 PF01624 MutS domain I UP12_08355 PF05192 MutS domain III UP12_08360 PF01119 DNA mismatch repair protein, C-terminal domain UP12_08360 PF08676 MutL C terminal dimerisation domain UP12_08365 PF17735 Biofilm surface layer A UP12_08380 PF02559 CarD-like/TRCF domain UP12_08385 PF05908 Poly-gamma-glutamate hydrolase UP12_08390 PF17874 MalT-like TPR region UP12_08390 PF18801 response regulator aspartate phosphatase H, N terminal UP12_08395 PF00082 Subtilase family UP12_08400 PF05908 Poly-gamma-glutamate hydrolase UP12_08405 PF02566 OsmC-like protein UP12_08410 PF00893 Small Multidrug Resistance protein UP12_08415 PF00893 Small Multidrug Resistance protein UP12_08430 PF12788 YmaF family UP12_08440 PF17209 Hfq protein UP12_08455 PF07972 NrdI Flavodoxin like UP12_08460 PF08343 Ribonucleotide reductase N-terminal UP12_08460 PF02867 Ribonucleotide reductase, barrel domain UP12_08460 PF00317 Ribonucleotide reductase, all-alpha domain UP12_08465 PF00268 Ribonucleotide reductase, small chain UP12_08475 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_08475 PF05036 Sporulation related domain UP12_08480 PF00004 ATPase family associated with various cellular activities (AAA) UP12_08480 PF17866 AAA lid domain UP12_08485 PF13167 GTP-binding GTPase N-terminal UP12_08485 PF16360 GTP-binding GTPase Middle Region UP12_08485 PF01926 50S ribosome-binding GTPase UP12_08490 PF06838 Methionine gamma-lyase UP12_08495 PF13411 MerR HTH family regulatory protein UP12_08500 PF00120 Glutamine synthetase, catalytic domain UP12_08500 PF03951 Glutamine synthetase, beta-Grasp domain UP12_08520 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH UP12_08520 PF04740 LXG domain of WXG superfamily UP12_08550 PF01569 PAP2 superfamily UP12_08555 PF08818 Domain of unknown function (DU1801) UP12_08565 PF18801 response regulator aspartate phosphatase H, N terminal UP12_08575 PF06912 Protein of unknown function (DUF1275) UP12_08580 PF01068 ATP dependent DNA ligase domain UP12_08585 PF02735 Ku70/Ku80 beta-barrel domain UP12_08590 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) UP12_08600 PF02082 Transcriptional regulator UP12_08605 PF05368 NmrA-like family UP12_08610 PF02754 Cysteine-rich domain UP12_08615 PF13183 4Fe-4S dicluster domain UP12_08615 PF02589 LUD domain UP12_08615 PF11870 Domain of unknown function (DUF3390) UP12_08620 PF02589 LUD domain UP12_08640 PF04239 Protein of unknown function (DUF421) UP12_08645 PF16295 Tetracyclin repressor-like, C-terminal domain UP12_08645 PF00440 Bacterial regulatory proteins, tetR family UP12_08650 PF00258 Flavodoxin UP12_08650 PF00067 Cytochrome P450 UP12_08650 PF00667 FAD binding domain UP12_08650 PF00175 Oxidoreductase NAD-binding domain UP12_08655 PF00089 Trypsin UP12_08660 PF14040 Deoxyribonuclease NucA/NucB UP12_08665 PF01740 STAS domain UP12_08670 PF16800 IseA DL-endopeptidase inhibitor UP12_08680 PF01726 LexA DNA binding domain UP12_08680 PF00717 Peptidase S24-like UP12_08685 PF01476 LysM domain UP12_08690 PF00239 Resolvase, N terminal domain UP12_08695 PF05979 Bacterial protein of unknown function (DUF896) UP12_08700 PF02780 Transketolase, C-terminal domain UP12_08700 PF00456 Transketolase, thiamine diphosphate binding domain UP12_08700 PF02779 Transketolase, pyrimidine binding domain UP12_08705 PF10747 Sporulation inhibitor of replication protein SirA UP12_08710 PF03672 Uncharacterised protein family (UPF0154) UP12_08715 PF09388 Spo0E like sporulation regulatory protein UP12_08720 PF02683 Cytochrome C biogenesis protein transmembrane region UP12_08725 PF07301 Protein of unknown function (DUF1453) UP12_08730 PF11084 Protein of unknown function (DUF2621) UP12_08740 PF08179 Small acid-soluble spore protein P family UP12_08750 PF00330 Aconitase family (aconitate hydratase) UP12_08750 PF00694 Aconitase C-terminal domain UP12_08755 PF00578 AhpC/TSA family UP12_08760 PF08177 Small acid-soluble spore protein N family UP12_08770 PF03061 Thioesterase superfamily UP12_08780 PF01521 Iron-sulphur cluster biosynthesis UP12_08785 PF02660 Glycerol-3-phosphate acyltransferase UP12_08790 PF13380 CoA binding domain UP12_08800 PF01751 Toprim domain UP12_08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_08800 PF00204 DNA gyrase B UP12_08800 PF00986 DNA gyrase B subunit, carboxyl terminus UP12_08805 PF03989 DNA gyrase C-terminal domain, beta-propeller UP12_08805 PF00521 DNA gyrase/topoisomerase IV, subunit A UP12_08815 PF07690 Major Facilitator Superfamily UP12_08825 PF01451 Low molecular weight phosphotyrosine protein phosphatase UP12_08830 PF02040 Arsenical pump membrane protein UP12_08835 PF01022 Bacterial regulatory protein, arsR family UP12_08845 PF01323 DSBA-like thioredoxin domain UP12_08850 PF02525 Flavodoxin-like fold UP12_08860 PF00440 Bacterial regulatory proteins, tetR family UP12_08865 PF02525 Flavodoxin-like fold UP12_08870 PF01638 HxlR-like helix-turn-helix UP12_08880 PF00291 Pyridoxal-phosphate dependent enzyme UP12_08885 PF01042 Endoribonuclease L-PSP UP12_08895 PF00440 Bacterial regulatory proteins, tetR family UP12_08900 PF01494 FAD binding domain UP12_08915 PF12802 MarR family UP12_08930 PF08803 Putative mono-oxygenase ydhR UP12_08955 PF07859 alpha/beta hydrolase fold UP12_08955 PF00934 PE family UP12_08960 PF13411 MerR HTH family regulatory protein UP12_08970 PF00512 His Kinase A (phospho-acceptor) domain UP12_08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_08975 PF00486 Transcriptional regulatory protein, C terminal UP12_08975 PF00072 Response regulator receiver domain UP12_08980 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain UP12_08980 PF17189 Glycosyl hydrolase family 30 beta sandwich domain UP12_08985 PF03422 Carbohydrate binding module (family 6) UP12_08985 PF04616 Glycosyl hydrolases family 43 UP12_08990 PF00171 Aldehyde dehydrogenase family UP12_08995 PF02056 Family 4 glycosyl hydrolase UP12_08995 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_09020 PF00834 Ribulose-phosphate 3 epimerase family UP12_09035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_09045 PF14449 Pre-toxin TG UP12_09045 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues UP12_09045 PF04740 LXG domain of WXG superfamily UP12_09050 PF01047 MarR family UP12_09055 PF07690 Major Facilitator Superfamily UP12_09060 PF01116 Fructose-bisphosphate aldolase class-II UP12_09065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_09065 PF02378 Phosphotransferase system, EIIC UP12_09065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_09070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_09070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_09075 PF00294 pfkB family carbohydrate kinase UP12_09080 PF01418 Helix-turn-helix domain, rpiR family UP12_09080 PF01380 SIS domain UP12_09085 PF13091 PLD-like domain UP12_09105 PF00171 Aldehyde dehydrogenase family UP12_09110 PF00258 Flavodoxin UP12_09110 PF00667 FAD binding domain UP12_09110 PF00175 Oxidoreductase NAD-binding domain UP12_09115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UP12_09115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UP12_09120 PF16177 Acetyl-coenzyme A synthetase N-terminus UP12_09120 PF13193 AMP-binding enzyme C-terminal domain UP12_09120 PF00501 AMP-binding enzyme UP12_09125 PF01039 Carboxyl transferase domain UP12_09130 PF00378 Enoyl-CoA hydratase/isomerase UP12_09135 PF00682 HMGL-like UP12_09140 PF00364 Biotin-requiring enzyme UP12_09145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_09145 PF02785 Biotin carboxylase C-terminal domain UP12_09145 PF00289 Biotin carboxylase, N-terminal domain UP12_09150 PF00501 AMP-binding enzyme UP12_09150 PF13193 AMP-binding enzyme C-terminal domain UP12_09155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_09155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_09155 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_09160 PF02638 Glycosyl hydrolase-like 10 UP12_09170 PF08220 DeoR-like helix-turn-helix domain UP12_09170 PF00455 DeoR C terminal sensor domain UP12_09175 PF14552 Tautomerase enzyme UP12_09185 PF05651 Putative sugar diacid recognition UP12_09185 PF13556 PucR C-terminal helix-turn-helix domain UP12_09185 PF17853 GGDEF-like domain UP12_09190 PF01565 FAD binding domain UP12_09190 PF02913 FAD linked oxidases, C-terminal domain UP12_09195 PF13183 4Fe-4S dicluster domain UP12_09195 PF02754 Cysteine-rich domain UP12_09200 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_09205 PF03845 Spore germination protein UP12_09215 PF12728 Helix-turn-helix domain UP12_09225 PF09335 SNARE associated Golgi protein UP12_09230 PF02602 Uroporphyrinogen-III synthase HemD UP12_09240 PF00296 Luciferase-like monooxygenase UP12_09260 PF01554 MatE UP12_09265 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family UP12_09270 PF01095 Pectinesterase UP12_09275 PF04239 Protein of unknown function (DUF421) UP12_09280 PF00355 Rieske [2Fe-2S] domain UP12_09285 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_09285 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain UP12_09285 PF01077 Nitrite and sulphite reductase 4Fe-4S domain UP12_09285 PF18267 Rubredoxin NAD+ reductase C-terminal domain UP12_09285 PF04324 BFD-like [2Fe-2S] binding domain UP12_09290 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_09290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster UP12_09295 PF01493 GXGXG motif UP12_09295 PF00310 Glutamine amidotransferases class-II UP12_09295 PF04898 Glutamate synthase central domain UP12_09295 PF01645 Conserved region in glutamate synthase UP12_09300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_09300 PF03466 LysR substrate binding domain UP12_09305 PF00664 ABC transporter transmembrane region UP12_09305 PF00005 ABC transporter UP12_09310 PF00005 ABC transporter UP12_09310 PF00664 ABC transporter transmembrane region UP12_09315 PF13411 MerR HTH family regulatory protein UP12_09315 PF06445 GyrI-like small molecule binding domain UP12_09320 PF00583 Acetyltransferase (GNAT) family UP12_09325 PF13302 Acetyltransferase (GNAT) domain UP12_09330 PF00171 Aldehyde dehydrogenase family UP12_09335 PF00696 Amino acid kinase family UP12_09335 PF01472 PUA domain UP12_09340 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_09340 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_09345 PF00067 Cytochrome P450 UP12_09350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain UP12_09350 PF00384 Molybdopterin oxidoreductase UP12_09350 PF01568 Molydopterin dinucleotide binding domain UP12_09355 PF00457 Glycosyl hydrolases family 11 UP12_09360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UP12_09360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UP12_09365 PF01261 Xylose isomerase-like TIM barrel UP12_09370 PF00480 ROK family UP12_09375 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain UP12_09375 PF04616 Glycosyl hydrolases family 43 UP12_09385 PF01588 Putative tRNA binding domain UP12_09395 PF14158 YndJ-like protein UP12_09400 PF13761 Domain of unknown function (DUF4166) UP12_09410 PF00440 Bacterial regulatory proteins, tetR family UP12_09410 PF13305 Tetracyclin repressor-like, C-terminal domain UP12_09415 PF00753 Metallo-beta-lactamase superfamily UP12_09420 PF06445 GyrI-like small molecule binding domain UP12_09425 PF13280 WYL domain UP12_09425 PF08279 HTH domain UP12_09435 PF01022 Bacterial regulatory protein, arsR family UP12_09440 PF00324 Amino acid permease UP12_09455 PF03972 MmgE/PrpD family UP12_09460 PF00285 Citrate synthase, C-terminal domain UP12_09465 PF04238 Protein of unknown function (DUF420) UP12_09475 PF01476 LysM domain UP12_09475 PF06725 3D domain UP12_09480 PF09382 RQC domain UP12_09480 PF00270 DEAD/DEAH box helicase UP12_09480 PF00271 Helicase conserved C-terminal domain UP12_09480 PF00570 HRDC domain UP12_09480 PF16124 RecQ zinc-binding UP12_09485 PF01258 Prokaryotic dksA/traR C4-type zinc finger UP12_09495 PF08000 Bacterial PH domain UP12_09505 PF00171 Aldehyde dehydrogenase family UP12_09510 PF13249 Squalene-hopene cyclase N-terminal domain UP12_09510 PF13243 Squalene-hopene cyclase C-terminal domain UP12_09515 PF02777 Iron/manganese superoxide dismutases, C-terminal domain UP12_09515 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain UP12_09520 PF01758 Sodium Bile acid symporter family UP12_09525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_09525 PF00364 Biotin-requiring enzyme UP12_09525 PF02817 e3 binding domain UP12_09530 PF16870 2-oxoglutarate dehydrogenase C-terminal UP12_09530 PF02779 Transketolase, pyrimidine binding domain UP12_09530 PF00676 Dehydrogenase E1 component UP12_09530 PF16078 2-oxoglutarate dehydrogenase N-terminus UP12_09535 PF00092 von Willebrand factor type A domain UP12_09540 PF07728 AAA domain (dynein-related subfamily) UP12_09545 PF00080 Copper/zinc superoxide dismutase (SODC) UP12_09545 PF13627 Prokaryotic lipoprotein-attachment site UP12_09550 PF00877 NlpC/P60 family UP12_09550 PF01476 LysM domain UP12_09555 PF10372 Bacterial membrane-spanning protein N-terminus UP12_09555 PF02457 DisA bacterial checkpoint controller nucleotide-binding UP12_09560 PF01554 MatE UP12_09565 PF02585 GlcNAc-PI de-N-acetylase UP12_09570 PF08830 Protein of unknown function (DUF1806) UP12_09580 PF00892 EamA-like transporter family UP12_09595 PF01638 HxlR-like helix-turn-helix UP12_09600 PF00881 Nitroreductase family UP12_09605 PF11755 Protein of unknown function (DUF3311) UP12_09610 PF00474 Sodium:solute symporter family UP12_09615 PF01471 Putative peptidoglycan binding domain UP12_09615 PF03572 Peptidase family S41 UP12_09615 PF17820 PDZ domain UP12_09620 PF08241 Methyltransferase domain UP12_09630 PF02557 D-alanyl-D-alanine carboxypeptidase UP12_09635 PF01048 Phosphorylase superfamily UP12_09640 PF14191 YodL-like UP12_09645 PF01569 PAP2 superfamily UP12_09655 PF06855 YozE SAM-like fold UP12_09660 PF14122 YokU-like protein, putative antitoxin UP12_09665 PF12544 Lysine-2,3-aminomutase UP12_09670 PF13426 PAS domain UP12_09670 PF00158 Sigma-54 interaction domain UP12_09670 PF02954 Bacterial regulatory protein, Fis family UP12_09675 PF00535 Glycosyl transferase family 2 UP12_09690 PF12996 DUF based on E. rectale Gene description (DUF3880) UP12_09700 PF02719 Polysaccharide biosynthesis protein UP12_09705 PF01641 SelR domain UP12_09710 PF01625 Peptide methionine sulfoxide reductase UP12_09715 PF01047 MarR family UP12_09730 PF17431 Uncharacterized YmpT-like UP12_09735 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) UP12_09740 PF13472 GDSL-like Lipase/Acylhydrolase family UP12_09745 PF02630 SCO1/SenC UP12_09750 PF02645 Uncharacterised protein, DegV family COG1307 UP12_09755 PF10751 Protein of unknown function (DUF2535) UP12_09760 PF00291 Pyridoxal-phosphate dependent enzyme UP12_09760 PF00585 C-terminal regulatory domain of Threonine dehydratase UP12_09765 PF00158 Sigma-54 interaction domain UP12_09765 PF08461 Ribonuclease R winged-helix domain UP12_09770 PF03006 Haemolysin-III related UP12_09780 PF00186 Dihydrofolate reductase UP12_09785 PF00303 Thymidylate synthase UP12_09790 PF04608 Phosphatidylglycerophosphatase A UP12_09795 PF14005 YpjP-like protein UP12_09800 PF04445 Putative SAM-dependent methyltransferase UP12_09805 PF06491 Disulphide isomerase UP12_09810 PF00920 Dehydratase family UP12_09815 PF08712 Scaffold protein Nfu/NifU N terminal UP12_09815 PF13769 Virulence factor UP12_09820 PF01966 HD domain UP12_09825 PF00255 Glutathione peroxidase UP12_09830 PF01268 Formate--tetrahydrofolate ligase UP12_09835 PF04204 Homoserine O-succinyltransferase UP12_09840 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase UP12_09840 PF00534 Glycosyl transferases group 1 UP12_09850 PF00313 'Cold-shock' DNA-binding domain UP12_09860 PF10782 Zinc-finger UP12_09865 PF13456 Reverse transcriptase-like UP12_09870 PF02592 Putative vitamin uptake transporter UP12_09875 PF13456 Reverse transcriptase-like UP12_09885 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain UP12_09885 PF01367 5'-3' exonuclease, C-terminal SAM fold UP12_09890 PF10752 Protein of unknown function (DUF2533) UP12_09895 PF00350 Dynamin family UP12_09900 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family UP12_09905 PF02797 Chalcone and stilbene synthases, C-terminal domain UP12_09905 PF00195 Chalcone and stilbene synthases, N-terminal domain UP12_09910 PF01522 Polysaccharide deacetylase UP12_09915 PF00860 Permease family UP12_09925 PF02074 Carboxypeptidase Taq (M32) metallopeptidase UP12_09930 PF13307 Helicase C-terminal domain UP12_09940 PF02926 THUMP domain UP12_09940 PF01170 Putative RNA methylase family UPF0020 UP12_09945 PF05103 DivIVA protein UP12_09950 PF06908 YspA SLOG family UP12_09955 PF13482 RNase_H superfamily UP12_09960 PF09369 Domain of unknown function (DUF1998) UP12_09960 PF00271 Helicase conserved C-terminal domain UP12_09960 PF00270 DEAD/DEAH box helicase UP12_09965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UP12_09970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_09980 PF14179 YppG-like protein UP12_09985 PF08807 Bacterial domain of unknown function (DUF1798) UP12_10000 PF10720 Protein of unknown function (DUF2515) UP12_10005 PF03838 Recombination protein U UP12_10010 PF00912 Transglycosylase UP12_10010 PF00905 Penicillin binding protein transpeptidase domain UP12_10020 PF00633 Helix-hairpin-helix motif UP12_10020 PF10576 Iron-sulfur binding domain of endonuclease III UP12_10020 PF00730 HhH-GPD superfamily base excision DNA repair protein UP12_10025 PF07261 Replication initiation and membrane attachment UP12_10030 PF00152 tRNA synthetases class II (D, K and N) UP12_10030 PF01336 OB-fold nucleic acid binding domain UP12_10035 PF03413 Peptidase propeptide and YPEB domain UP12_10035 PF17881 Domain of unknown function (DUF5590) UP12_10040 PF00929 Exonuclease UP12_10040 PF13307 Helicase C-terminal domain UP12_10040 PF04851 Type III restriction enzyme, res subunit UP12_10045 PF02261 Aspartate decarboxylase UP12_10050 PF02569 Pantoate-beta-alanine ligase UP12_10055 PF02548 Ketopantoate hydroxymethyltransferase UP12_10060 PF02237 Biotin protein ligase C terminal domain UP12_10060 PF08279 HTH domain UP12_10060 PF03099 Biotin/lipoate A/B protein ligase family UP12_10065 PF01743 Poly A polymerase head domain UP12_10065 PF13735 tRNA nucleotidyltransferase domain 2 putative UP12_10065 PF12627 Probable RNA and SrmB- binding site of polymerase A UP12_10070 PF00534 Glycosyl transferases group 1 UP12_10070 PF13439 Glycosyltransferase Family 4 UP12_10075 PF02585 GlcNAc-PI de-N-acetylase UP12_10080 PF02142 MGS-like domain UP12_10085 PF05173 Dihydrodipicolinate reductase, C-terminus UP12_10085 PF01113 Dihydrodipicolinate reductase, N-terminus UP12_10090 PF03819 MazG nucleotide pyrophosphohydrolase domain UP12_10095 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_10095 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_10100 PF09577 Sporulation protein YpjB (SpoYpjB) UP12_10105 PF07187 Protein of unknown function (DUF1405) UP12_10110 PF00032 Cytochrome b(C-terminal)/b6/petD UP12_10110 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UP12_10115 PF00033 Cytochrome b/b6/petB UP12_10120 PF00355 Rieske [2Fe-2S] domain UP12_10125 PF10673 Protein of unknown function (DUF2487) UP12_10130 PF08864 UPF0302 domain UP12_10130 PF08858 IDEAL domain UP12_10140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UP12_10145 PF02153 Prephenate dehydrogenase UP12_10145 PF01842 ACT domain UP12_10150 PF00155 Aminotransferase class I and II UP12_10155 PF00290 Tryptophan synthase alpha chain UP12_10160 PF00291 Pyridoxal-phosphate dependent enzyme UP12_10165 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase UP12_10170 PF00218 Indole-3-glycerol phosphate synthase UP12_10175 PF00591 Glycosyl transferase family, a/b domain UP12_10175 PF02885 Glycosyl transferase family, helical bundle domain UP12_10180 PF04715 Anthranilate synthase component I, N terminal region UP12_10180 PF00425 chorismate binding enzyme UP12_10185 PF07736 Chorismate mutase type I UP12_10190 PF01761 3-dehydroquinate synthase UP12_10195 PF01264 Chorismate synthase UP12_10200 PF01739 CheR methyltransferase, SAM binding domain UP12_10200 PF03705 CheR methyltransferase, all-alpha domain UP12_10205 PF00334 Nucleoside diphosphate kinase UP12_10210 PF00348 Polyprenyl synthetase UP12_10215 PF01209 ubiE/COQ5 methyltransferase family UP12_10220 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 UP12_10225 PF02081 Tryptophan RNA-binding attenuator protein UP12_10230 PF01227 GTP cyclohydrolase I UP12_10235 PF00216 Bacterial DNA-binding protein UP12_10240 PF09547 Stage IV sporulation protein A (spore_IV_A) UP12_10250 PF10966 Protein of unknown function (DUF2768) UP12_10255 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UP12_10255 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus UP12_10260 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal UP12_10260 PF01926 50S ribosome-binding GTPase UP12_10270 PF14045 YIEGIA protein UP12_10280 PF01070 FMN-dependent dehydrogenase UP12_10285 PF00575 S1 RNA binding domain UP12_10290 PF02224 Cytidylate kinase UP12_10295 PF17313 Family of unknown function (DUF5359) UP12_10300 PF12945 Flagellar protein YcgR UP12_10300 PF07238 PilZ domain UP12_10305 PF14620 YpeB sporulation UP12_10305 PF03413 Peptidase propeptide and YPEB domain UP12_10310 PF01471 Putative peptidoglycan binding domain UP12_10310 PF07486 Cell Wall Hydrolase UP12_10315 PF13367 PrsW family intramembrane metalloprotease UP12_10325 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_10325 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UP12_10330 PF05389 Negative regulator of genetic competence (MecA) UP12_10335 PF00149 Calcineurin-like phosphoesterase UP12_10340 PF10864 Protein of unknown function (DUF2663) UP12_10345 PF01476 LysM domain UP12_10350 PF02517 CPBP intramembrane metalloprotease UP12_10355 PF00270 DEAD/DEAH box helicase UP12_10355 PF00271 Helicase conserved C-terminal domain UP12_10360 PF14493 Helix-turn-helix domain UP12_10370 PF12822 ECF transporter, substrate-specific component UP12_10375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UP12_10375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UP12_10375 PF01842 ACT domain UP12_10380 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_10380 PF01471 Putative peptidoglycan binding domain UP12_10380 PF01476 LysM domain UP12_10390 PF08281 Sigma-70, region 4 UP12_10390 PF04542 Sigma-70 region 2 UP12_10395 PF00672 HAMP domain UP12_10395 PF00512 His Kinase A (phospho-acceptor) domain UP12_10395 PF18698 Histidine kinase sensor domain UP12_10395 PF00989 PAS fold UP12_10395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_10400 PF00486 Transcriptional regulatory protein, C terminal UP12_10400 PF00072 Response regulator receiver domain UP12_10405 PF01578 Cytochrome C assembly protein UP12_10410 PF05140 ResB-like family UP12_10415 PF00578 AhpC/TSA family UP12_10420 PF01479 S4 domain UP12_10420 PF00849 RNA pseudouridylate synthase UP12_10425 PF07670 Nucleoside recognition UP12_10430 PF07670 Nucleoside recognition UP12_10435 PF07943 Penicillin-binding protein 5, C-terminal domain UP12_10435 PF00768 D-alanyl-D-alanine carboxypeptidase UP12_10440 PF13047 Protein of unknown function (DUF3907) UP12_10445 PF04079 Segregation and condensation complex subunit ScpB UP12_10450 PF02616 Segregation and condensation protein ScpA UP12_10455 PF03745 Domain of unknown function (DUF309) UP12_10460 PF00583 Acetyltransferase (GNAT) family UP12_10465 PF00885 6,7-dimethyl-8-ribityllumazine synthase UP12_10475 PF00677 Lumazine binding domain UP12_10495 PF07690 Major Facilitator Superfamily UP12_10500 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD UP12_10505 PF06207 Protein of unknown function (DUF1002) UP12_10510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain UP12_10510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain UP12_10515 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_10520 PF14097 Stage V sporulation protein AE1 UP12_10525 PF03862 SpoVAC/SpoVAEB sporulation membrane protein UP12_10530 PF07451 Stage V sporulation protein AD (SpoVAD) UP12_10535 PF03862 SpoVAC/SpoVAEB sporulation membrane protein UP12_10540 PF13782 Stage V sporulation protein AB UP12_10545 PF12164 Stage V sporulation protein AA UP12_10550 PF04542 Sigma-70 region 2 UP12_10550 PF04539 Sigma-70 region 3 UP12_10550 PF04545 Sigma-70, region 4 UP12_10555 PF13581 Histidine kinase-like ATPase domain UP12_10560 PF01740 STAS domain UP12_10565 PF07943 Penicillin-binding protein 5, C-terminal domain UP12_10565 PF00768 D-alanyl-D-alanine carboxypeptidase UP12_10570 PF01048 Phosphorylase superfamily UP12_10575 PF01676 Metalloenzyme superfamily UP12_10580 PF00589 Phage integrase family UP12_10580 PF02899 Phage integrase, N-terminal SAM-like domain UP12_10585 PF14004 Protein of unknown function (DUF4227) UP12_10590 PF01475 Ferric uptake regulator family UP12_10595 PF01944 Stage II sporulation protein M UP12_10600 PF00082 Subtilase family UP12_10600 PF05922 Peptidase inhibitor I9 UP12_10610 PF13673 Acetyltransferase (GNAT) domain UP12_10620 PF00293 NUDIX domain UP12_10625 PF00248 Aldo/keto reductase family UP12_10630 PF01638 HxlR-like helix-turn-helix UP12_10635 PF02525 Flavodoxin-like fold UP12_10645 PF12146 Serine aminopeptidase, S33 UP12_10650 PF18801 response regulator aspartate phosphatase H, N terminal UP12_10655 PF10827 Protein of unknown function (DUF2552) UP12_10660 PF01521 Iron-sulphur cluster biosynthesis UP12_10665 PF03330 Lytic transglycolase UP12_10670 PF13673 Acetyltransferase (GNAT) domain UP12_10670 PF04229 GrpB protein UP12_10675 PF00583 Acetyltransferase (GNAT) family UP12_10680 PF10787 Uncharacterised protein from bacillus cereus group UP12_10685 PF11799 impB/mucB/samB family C-terminal domain UP12_10685 PF00817 impB/mucB/samB family UP12_10690 PF08863 YolD-like protein UP12_10695 PF07690 Major Facilitator Superfamily UP12_10700 PF00485 Phosphoribulokinase / Uridine kinase family UP12_10705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_10705 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_10710 PF00106 short chain dehydrogenase UP12_10715 PF00753 Metallo-beta-lactamase superfamily UP12_10720 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_10720 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_10730 PF01546 Peptidase family M20/M25/M40 UP12_10735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family UP12_10740 PF12146 Serine aminopeptidase, S33 UP12_10745 PF12897 Alanine-glyoxylate amino-transferase UP12_10750 PF12706 Beta-lactamase superfamily domain UP12_10755 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain UP12_10755 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain UP12_10760 PF00392 Bacterial regulatory proteins, gntR family UP12_10760 PF07702 UTRA domain UP12_10765 PF00232 Glycosyl hydrolase family 1 UP12_10770 PF02378 Phosphotransferase system, EIIC UP12_10775 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit UP12_10780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_10790 PF06800 Sugar transport protein UP12_10795 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain UP12_10795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UP12_10800 PF11798 IMS family HHH motif UP12_10800 PF11799 impB/mucB/samB family C-terminal domain UP12_10800 PF00817 impB/mucB/samB family UP12_10805 PF00795 Carbon-nitrogen hydrolase UP12_10815 PF02096 60Kd inner membrane protein UP12_10825 PF01546 Peptidase family M20/M25/M40 UP12_10825 PF07687 Peptidase dimerisation domain UP12_10830 PF01039 Carboxyl transferase domain UP12_10840 PF03734 L,D-transpeptidase catalytic domain UP12_10845 PF11728 Putative aromatic acid exporter C-terminal domain UP12_10845 PF06081 Aromatic acid exporter family member 1 UP12_10850 PF00005 ABC transporter UP12_10855 PF00528 Binding-protein-dependent transport system inner membrane component UP12_10860 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_10865 PF06491 Disulphide isomerase UP12_10870 PF00781 Diacylglycerol kinase catalytic domain UP12_10880 PF02817 e3 binding domain UP12_10880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) UP12_10880 PF00364 Biotin-requiring enzyme UP12_10885 PF02780 Transketolase, C-terminal domain UP12_10885 PF02779 Transketolase, pyrimidine binding domain UP12_10890 PF00676 Dehydrogenase E1 component UP12_10895 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_10895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain UP12_10900 PF00871 Acetokinase family UP12_10905 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UP12_10905 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_10910 PF01515 Phosphate acetyl/butaryl transferase UP12_10915 PF02954 Bacterial regulatory protein, Fis family UP12_10915 PF00989 PAS fold UP12_10915 PF00158 Sigma-54 interaction domain UP12_10920 PF11118 Protein of unknown function (DUF2627) UP12_10925 PF03009 Glycerophosphoryl diester phosphodiesterase family UP12_10930 PF18801 response regulator aspartate phosphatase H, N terminal UP12_10940 PF08769 Sporulation initiation factor Spo0A C terminal UP12_10940 PF00072 Response regulator receiver domain UP12_10945 PF17820 PDZ domain UP12_10945 PF05580 SpoIVB peptidase S55 UP12_10950 PF13476 AAA domain UP12_10955 PF01316 Arginine repressor, DNA binding domain UP12_10955 PF02863 Arginine repressor, C-terminal domain UP12_10960 PF01479 S4 domain UP12_10960 PF01728 FtsJ-like methyltransferase UP12_10965 PF13292 1-deoxy-D-xylulose-5-phosphate synthase UP12_10965 PF02779 Transketolase, pyrimidine binding domain UP12_10965 PF02780 Transketolase, C-terminal domain UP12_10970 PF00348 Polyprenyl synthetase UP12_10975 PF02609 Exonuclease VII small subunit UP12_10980 PF13742 OB-fold nucleic acid binding domain UP12_10980 PF02601 Exonuclease VII, large subunit UP12_10985 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UP12_10985 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain UP12_10990 PF01029 NusB family UP12_10995 PF03780 Asp23 family, cell envelope-related function UP12_11000 PF00289 Biotin carboxylase, N-terminal domain UP12_11000 PF02785 Biotin carboxylase C-terminal domain UP12_11000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain UP12_11005 PF00364 Biotin-requiring enzyme UP12_11010 PF12685 SpoIIIAH-like protein UP12_11020 PF09581 Stage III sporulation protein AF (Spore_III_AF) UP12_11025 PF09546 Stage III sporulation protein AE (spore_III_AE) UP12_11030 PF06686 Stage III sporulation protein AC/AD protein family UP12_11035 PF06686 Stage III sporulation protein AC/AD protein family UP12_11040 PF09548 Stage III sporulation protein AB (spore_III_AB) UP12_11050 PF10942 Protein of unknown function (DUF2619) UP12_11055 PF01132 Elongation factor P (EF-P) OB domain UP12_11055 PF08207 Elongation factor P (EF-P) KOW-like domain UP12_11055 PF09285 Elongation factor P, C-terminal UP12_11060 PF01321 Creatinase/Prolidase N-terminal domain UP12_11060 PF00557 Metallopeptidase family M24 UP12_11065 PF01220 Dehydroquinase class II UP12_11070 PF11085 Conserved membrane protein YqhR UP12_11075 PF07136 Protein of unknown function (DUF1385) UP12_11085 PF01734 Patatin-like phospholipase UP12_11090 PF01325 Iron dependent repressor, N-terminal DNA binding domain UP12_11090 PF02742 Iron dependent repressor, metal binding and dimerisation domain UP12_11095 PF03099 Biotin/lipoate A/B protein ligase family UP12_11100 PF00581 Rhodanese-like domain UP12_11105 PF02347 Glycine cleavage system P-protein UP12_11110 PF02347 Glycine cleavage system P-protein UP12_11115 PF08669 Glycine cleavage T-protein C-terminal barrel domain UP12_11115 PF01571 Aminomethyltransferase folate-binding domain UP12_11120 PF00176 SNF2 family N-terminal domain UP12_11120 PF00271 Helicase conserved C-terminal domain UP12_11125 PF11079 Bacterial protein YqhG of unknown function UP12_11130 PF01381 Helix-turn-helix UP12_11130 PF08671 Anti-repressor SinI UP12_11135 PF12389 Camelysin metallo-endopeptidase UP12_11150 PF13028 Protein of unknown function (DUF3889) UP12_11155 PF14038 YqzE-like protein UP12_11175 PF07963 Prokaryotic N-terminal methylation motif UP12_11180 PF07963 Prokaryotic N-terminal methylation motif UP12_11185 PF00482 Type II secretion system (T2SS), protein F UP12_11190 PF00437 Type II/IV secretion system protein UP12_11200 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain UP12_11200 PF01740 STAS domain UP12_11210 PF03960 ArsC family UP12_11215 PF11117 Protein of unknown function (DUF2626) UP12_11220 PF00753 Metallo-beta-lactamase superfamily UP12_11225 PF10958 Protein of unknown function (DUF2759) UP12_11230 PF01910 Thiamine-binding protein UP12_11235 PF07690 Major Facilitator Superfamily UP12_11240 PF00246 Zinc carboxypeptidase UP12_11245 PF00884 Sulfatase UP12_11250 PF00480 ROK family UP12_11255 PF06014 Bacterial protein of unknown function (DUF910) UP12_11260 PF01694 Rhomboid family UP12_11270 PF01812 5-formyltetrahydrofolate cyclo-ligase family UP12_11275 PF00471 Ribosomal protein L33 UP12_11290 PF00005 ABC transporter UP12_11295 PF00005 ABC transporter UP12_11300 PF00528 Binding-protein-dependent transport system inner membrane component UP12_11305 PF00528 Binding-protein-dependent transport system inner membrane component UP12_11310 PF12849 PBP superfamily domain UP12_11320 PF07690 Major Facilitator Superfamily UP12_11325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain UP12_11325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain UP12_11330 PF04306 Protein of unknown function (DUF456) UP12_11335 PF06691 Protein of unknown function (DUF1189) UP12_11340 PF13302 Acetyltransferase (GNAT) domain UP12_11350 PF04551 GcpE protein UP12_11365 PF00480 ROK family UP12_11370 PF01475 Ferric uptake regulator family UP12_11375 PF00950 ABC 3 transport family UP12_11380 PF00005 ABC transporter UP12_11385 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_11385 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_11390 PF11116 Protein of unknown function (DUF2624) UP12_11395 PF01261 Xylose isomerase-like TIM barrel UP12_11400 PF00270 DEAD/DEAH box helicase UP12_11400 PF00271 Helicase conserved C-terminal domain UP12_11410 PF02401 LytB protein UP12_11415 PF01784 NIF3 (NGG1p interacting factor 3) UP12_11420 PF04816 tRNA (adenine(22)-N(1))-methyltransferase UP12_11425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UP12_11430 PF04542 Sigma-70 region 2 UP12_11430 PF04539 Sigma-70 region 3 UP12_11430 PF03979 Sigma-70 factor, region 1.1 UP12_11430 PF04545 Sigma-70, region 4 UP12_11430 PF00140 Sigma-70 factor, region 1.2 UP12_11435 PF10410 DnaB-helicase binding domain of primase UP12_11435 PF01807 CHC2 zinc finger UP12_11435 PF08275 DNA primase catalytic core, N-terminal domain UP12_11440 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 UP12_11445 PF03618 Kinase/pyrophosphorylase UP12_11450 PF00571 CBS domain UP12_11450 PF08279 HTH domain UP12_11455 PF02092 Glycyl-tRNA synthetase beta subunit UP12_11460 PF02091 Glycyl-tRNA synthetase alpha subunit UP12_11465 PF02565 Recombination protein O C terminal UP12_11465 PF11967 Recombination protein O N terminal UP12_11470 PF01926 50S ribosome-binding GTPase UP12_11470 PF07650 KH domain UP12_11475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_11480 PF01219 Prokaryotic diacylglycerol kinase UP12_11485 PF02130 Uncharacterized protein family UPF0054 UP12_11490 PF01966 HD domain UP12_11490 PF07697 7TM-HD extracellular UP12_11490 PF07698 7TM receptor with intracellular HD hydrolase UP12_11495 PF02562 PhoH-like protein UP12_11500 PF06898 Putative stage IV sporulation protein YqfD UP12_11505 PF07873 YabP family UP12_11515 PF12127 SigmaW regulon antibacterial UP12_11520 PF01972 Serine dehydrogenase proteinase UP12_11520 PF01957 NfeD-like C-terminal, partner-binding UP12_11525 PF09424 Yqey-like protein UP12_11530 PF01165 Ribosomal protein S21 UP12_11535 PF02690 Na+/Pi-cotransporter UP12_11540 PF00919 Uncharacterized protein family UPF0004 UP12_11540 PF01938 TRAM domain UP12_11540 PF04055 Radical SAM superfamily UP12_11545 PF04452 RNA methyltransferase UP12_11555 PF01556 DnaJ C terminal domain UP12_11555 PF00226 DnaJ domain UP12_11555 PF00684 DnaJ central domain UP12_11560 PF00012 Hsp70 protein UP12_11565 PF01025 GrpE UP12_11570 PF01628 HrcA protein C terminal domain UP12_11575 PF04055 Radical SAM superfamily UP12_11575 PF06969 HemN C-terminal domain UP12_11580 PF06421 GTP-binding protein LepA C-terminus UP12_11580 PF03144 Elongation factor Tu domain 2 UP12_11580 PF00009 Elongation factor Tu GTP binding domain UP12_11580 PF00679 Elongation factor G C-terminus UP12_11585 PF12438 Protein of unknown function (DUF3679) UP12_11590 PF07454 Stage II sporulation protein P (SpoIIP) UP12_11595 PF03418 Germination protease UP12_11600 PF01649 Ribosomal protein S20 UP12_11605 PF06144 DNA polymerase III, delta subunit UP12_11610 PF14141 YqzM-like protein UP12_11615 PF03772 Competence protein UP12_11615 PF13567 Domain of unknown function (DUF4131) UP12_11615 PF00753 Metallo-beta-lactamase superfamily UP12_11620 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_11630 PF03807 NADP oxidoreductase coenzyme F420-dependent UP12_11630 PF14748 Pyrroline-5-carboxylate reductase dimerisation UP12_11635 PF13649 Methyltransferase domain UP12_11645 PF01966 HD domain UP12_11650 PF01467 Cytidylyltransferase-like UP12_11655 PF01985 CRS1 / YhbY (CRM) domain UP12_11660 PF08501 Shikimate dehydrogenase substrate binding domain UP12_11660 PF01488 Shikimate / quinate 5-dehydrogenase UP12_11660 PF18317 Shikimate 5'-dehydrogenase C-terminal domain UP12_11665 PF01926 50S ribosome-binding GTPase UP12_11675 PF08970 Sporulation inhibitor A UP12_11680 PF00657 GDSL-like Lipase/Acylhydrolase UP12_11685 PF01522 Polysaccharide deacetylase UP12_11690 PF13176 Tetratricopeptide repeat UP12_11690 PF18801 response regulator aspartate phosphatase H, N terminal UP12_11695 PF04545 Sigma-70, region 4 UP12_11695 PF04542 Sigma-70 region 2 UP12_11710 PF13344 Haloacid dehalogenase-like hydrolase UP12_11710 PF00293 NUDIX domain UP12_11720 PF11738 Protein of unknown function (DUF3298) UP12_11720 PF01522 Polysaccharide deacetylase UP12_11720 PF13739 Deacetylase PdaC UP12_11745 PF00083 Sugar (and other) transporter UP12_11750 PF02610 L-arabinose isomerase UP12_11750 PF11762 L-arabinose isomerase C-terminal domain UP12_11755 PF00596 Class II Aldolase and Adducin N-terminal domain UP12_11765 PF00392 Bacterial regulatory proteins, gntR family UP12_11775 PF01380 SIS domain UP12_11780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_11785 PF01638 HxlR-like helix-turn-helix UP12_11790 PF00135 Carboxylesterase family UP12_11805 PF00905 Penicillin binding protein transpeptidase domain UP12_11810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_11810 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_11810 PF08028 Acyl-CoA dehydrogenase, C-terminal domain UP12_11815 PF00005 ABC transporter UP12_11820 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_11825 PF00528 Binding-protein-dependent transport system inner membrane component UP12_11830 PF00528 Binding-protein-dependent transport system inner membrane component UP12_11835 PF05067 Manganese containing catalase UP12_11840 PF00107 Zinc-binding dehydrogenase UP12_11840 PF08240 Alcohol dehydrogenase GroES-like domain UP12_11855 PF00465 Iron-containing alcohol dehydrogenase UP12_11860 PF01235 Sodium:alanine symporter family UP12_11865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_11865 PF03466 LysR substrate binding domain UP12_11870 PF00107 Zinc-binding dehydrogenase UP12_11870 PF08240 Alcohol dehydrogenase GroES-like domain UP12_11875 PF08241 Methyltransferase domain UP12_11880 PF14143 YrhC-like protein UP12_11885 PF01053 Cys/Met metabolism PLP-dependent enzyme UP12_11890 PF00291 Pyridoxal-phosphate dependent enzyme UP12_11895 PF01048 Phosphorylase superfamily UP12_11900 PF13649 Methyltransferase domain UP12_11905 PF10750 Protein of unknown function (DUF2536) UP12_11910 PF07423 Domain of unknown function (DUF1510) UP12_11915 PF03717 Penicillin-binding Protein dimerisation domain UP12_11915 PF00905 Penicillin binding protein transpeptidase domain UP12_11920 PF03449 Transcription elongation factor, N-terminal UP12_11920 PF01272 Transcription elongation factor, GreA/GreB, C-term UP12_11925 PF02368 Bacterial Ig-like domain (group 2) UP12_11930 PF00485 Phosphoribulokinase / Uridine kinase family UP12_11950 PF02618 YceG-like family UP12_11955 PF02803 Thiolase, C-terminal domain UP12_11955 PF00108 Thiolase, N-terminal domain UP12_11960 PF00501 AMP-binding enzyme UP12_11960 PF13193 AMP-binding enzyme C-terminal domain UP12_11965 PF02632 BioY family UP12_11970 PF06949 Protein of unknown function (DUF1292) UP12_11975 PF03652 Holliday junction resolvase UP12_11980 PF06135 IreB regulatory phosphoprotein UP12_11985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UP12_11985 PF01411 tRNA synthetases class II (A) UP12_11985 PF02272 DHHA1 domain UP12_11990 PF01594 AI-2E family transporter UP12_11995 PF00005 ABC transporter UP12_12000 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_12005 PF00528 Binding-protein-dependent transport system inner membrane component UP12_12010 PF00528 Binding-protein-dependent transport system inner membrane component UP12_12020 PF05239 PRC-barrel domain UP12_12025 PF14490 Helix-hairpin-helix containing domain UP12_12025 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain UP12_12025 PF13538 UvrD-like helicase C-terminal domain UP12_12030 PF13181 Tetratricopeptide repeat UP12_12030 PF07719 Tetratricopeptide repeat UP12_12040 PF00266 Aminotransferase class-V UP12_12045 PF02082 Transcriptional regulator UP12_12050 PF05496 Holliday junction DNA helicase RuvB P-loop domain UP12_12050 PF12002 MgsA AAA+ ATPase C terminal UP12_12050 PF16193 AAA C-terminal domain UP12_12055 PF00899 ThiF family UP12_12060 PF01336 OB-fold nucleic acid binding domain UP12_12060 PF02938 GAD domain UP12_12060 PF00152 tRNA synthetases class II (D, K and N) UP12_12065 PF13393 Histidyl-tRNA synthetase UP12_12065 PF03129 Anticodon binding domain UP12_12070 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_12070 PF08239 Bacterial SH3 domain UP12_12075 PF02580 D-Tyr-tRNA(Tyr) deacylase UP12_12080 PF02824 TGS domain UP12_12080 PF04607 Region found in RelA / SpoT proteins UP12_12080 PF13291 ACT domain UP12_12085 PF00156 Phosphoribosyl transferase domain UP12_12090 PF17768 RecJ OB domain UP12_12090 PF10141 Single-strand DNA-specific exonuclease, C terminal domain UP12_12090 PF02272 DHHA1 domain UP12_12090 PF01368 DHH family UP12_12095 PF06305 Lipopolysaccharide assembly protein A domain UP12_12100 PF02080 TrkA-C domain UP12_12105 PF02355 Protein export membrane protein UP12_12105 PF07549 SecD/SecF GG Motif UP12_12110 PF13797 Post-transcriptional regulator UP12_12115 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_12115 PF01943 Polysaccharide biosynthesis protein UP12_12120 PF04239 Protein of unknown function (DUF421) UP12_12125 PF12670 Protein of unknown function (DUF3792) UP12_12130 PF02699 Preprotein translocase subunit UP12_12135 PF01702 Queuine tRNA-ribosyltransferase UP12_12140 PF02547 Queuosine biosynthesis protein UP12_12145 PF11146 Protein of unknown function (DUF2905) UP12_12150 PF05491 RuvB C-terminal winged helix domain UP12_12150 PF05496 Holliday junction DNA helicase RuvB P-loop domain UP12_12150 PF17864 RuvB AAA lid domain UP12_12155 PF07499 RuvA, C-terminal domain UP12_12155 PF01330 RuvA N terminal domain UP12_12160 PF08955 BofC C-terminal domain UP12_12160 PF08977 Bypass of Forespore C, N terminal UP12_12175 PF01964 Radical SAM ThiC family UP12_12175 PF13667 ThiC-associated domain UP12_12185 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_12190 PF01476 LysM domain UP12_12195 PF02445 Quinolinate synthetase A protein UP12_12200 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain UP12_12200 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain UP12_12205 PF02910 Fumarate reductase flavoprotein C-term UP12_12205 PF00890 FAD binding domain UP12_12210 PF00266 Aminotransferase class-V UP12_12215 PF02829 3H domain UP12_12215 PF08279 HTH domain UP12_12220 PF01842 ACT domain UP12_12220 PF00800 Prephenate dehydratase UP12_12225 PF01842 ACT domain UP12_12230 PF09269 Domain of unknown function (DUF1967) UP12_12230 PF01926 50S ribosome-binding GTPase UP12_12230 PF01018 GTP1/OBG UP12_12235 PF14682 Sporulation initiation phospho-transferase B, C-terminal UP12_12235 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_12240 PF01016 Ribosomal L27 protein UP12_12245 PF04327 Cysteine protease Prp UP12_12250 PF00829 Ribosomal prokaryotic L21 protein UP12_12255 PF02163 Peptidase family M50 UP12_12260 PF01551 Peptidase family M23 UP12_12265 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain UP12_12270 PF03775 Septum formation inhibitor MinC, C-terminal domain UP12_12275 PF04093 rod shape-determining protein MreD UP12_12280 PF04085 rod shape-determining protein MreC UP12_12290 PF04002 RadC-like JAB domain UP12_12295 PF02545 Maf-like protein UP12_12300 PF05036 Sporulation related domain UP12_12305 PF01478 Type IV leader peptidase family UP12_12305 PF06750 Bacterial Peptidase A24 N-terminal domain UP12_12310 PF02875 Mur ligase family, glutamate ligase domain UP12_12310 PF08245 Mur ligase middle domain UP12_12315 PF10458 Valyl tRNA synthetase tRNA binding arm UP12_12315 PF00133 tRNA synthetases class I (I, L, M and V) UP12_12315 PF08264 Anticodon-binding domain of tRNA UP12_12330 PF01476 LysM domain UP12_12335 PF00202 Aminotransferase class-III UP12_12340 PF00490 Delta-aminolevulinic acid dehydratase UP12_12345 PF02602 Uroporphyrinogen-III synthase HemD UP12_12350 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain UP12_12350 PF03900 Porphobilinogen deaminase, C-terminal domain UP12_12355 PF01578 Cytochrome C assembly protein UP12_12360 PF01488 Shikimate / quinate 5-dehydrogenase UP12_12360 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain UP12_12360 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain UP12_12370 PF01926 50S ribosome-binding GTPase UP12_12375 PF05362 Lon protease (S16) C-terminal proteolytic domain UP12_12375 PF00004 ATPase family associated with various cellular activities (AAA) UP12_12375 PF02190 ATP-dependent protease La (LON) substrate-binding domain UP12_12380 PF00004 ATPase family associated with various cellular activities (AAA) UP12_12380 PF05362 Lon protease (S16) C-terminal proteolytic domain UP12_12385 PF07724 AAA domain (Cdc48 subfamily) UP12_12385 PF10431 C-terminal, D2-small domain, of ClpB protein UP12_12385 PF06689 ClpX C4-type zinc finger UP12_12390 PF05697 Bacterial trigger factor protein (TF) UP12_12390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase UP12_12390 PF05698 Bacterial trigger factor protein (TF) C-terminus UP12_12400 PF00694 Aconitase C-terminal domain UP12_12405 PF00330 Aconitase family (aconitate hydratase) UP12_12410 PF00180 Isocitrate/isopropylmalate dehydrogenase UP12_12415 PF08502 LeuA allosteric (dimerisation) domain UP12_12415 PF00682 HMGL-like UP12_12420 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain UP12_12420 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain UP12_12425 PF01842 ACT domain UP12_12425 PF10369 Small subunit of acetolactate synthase UP12_12430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_12430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_12430 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_12435 PF01063 Amino-transferase class IV UP12_12440 PF10282 Lactonase, 7-bladed beta-propeller UP12_12445 PF06803 Protein of unknown function (DUF1232) UP12_12450 PF04914 DltD protein UP12_12455 PF00550 Phosphopantetheine attachment site UP12_12460 PF03062 MBOAT, membrane-bound O-acyltransferase family UP12_12465 PF00501 AMP-binding enzyme UP12_12465 PF13193 AMP-binding enzyme C-terminal domain UP12_12475 PF14449 Pre-toxin TG UP12_12475 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues UP12_12475 PF04740 LXG domain of WXG superfamily UP12_12510 PF12850 Calcineurin-like phosphoesterase superfamily domain UP12_12515 PF01725 Ham1 family UP12_12520 PF01138 3' exoribonuclease family, domain 1 UP12_12520 PF03725 3' exoribonuclease family, domain 2 UP12_12525 PF10646 Sporulation and spore germination UP12_12530 PF01177 Asp/Glu/Hydantoin racemase UP12_12535 PF01047 MarR family UP12_12560 PF05036 Sporulation related domain UP12_12560 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_12565 PF05105 Bacteriophage holin family UP12_12585 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase UP12_12585 PF01476 LysM domain UP12_12595 PF01464 Transglycosylase SLT domain UP12_12695 PF00589 Phage integrase family UP12_12735 PF01555 DNA methylase UP12_12750 PF17356 Phage-like element PBSX protein XtrA UP12_12785 PF00196 Bacterial regulatory proteins, luxR family UP12_12790 PF03600 Citrate transporter UP12_12795 PF03466 LysR substrate binding domain UP12_12795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_12800 PF04303 PrpF protein UP12_12805 PF02237 Biotin protein ligase C terminal domain UP12_12805 PF03099 Biotin/lipoate A/B protein ligase family UP12_12810 PF03061 Thioesterase superfamily UP12_12815 PF13085 2Fe-2S iron-sulfur cluster binding domain UP12_12815 PF13183 4Fe-4S dicluster domain UP12_12820 PF00890 FAD binding domain UP12_12820 PF02910 Fumarate reductase flavoprotein C-term UP12_12825 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit UP12_12830 PF10702 Protein of unknown function (DUF2507) UP12_12835 PF00696 Amino acid kinase family UP12_12835 PF01842 ACT domain UP12_12835 PF13840 ACT domain UP12_12840 PF01541 GIY-YIG catalytic domain UP12_12840 PF02151 UvrB/uvrC motif UP12_12840 PF08459 UvrC Helix-hairpin-helix N-terminal UP12_12845 PF00085 Thioredoxin UP12_12850 PF06964 Alpha-L-arabinofuranosidase C-terminal domain UP12_12855 PF00766 Electron transfer flavoprotein FAD-binding domain UP12_12855 PF01012 Electron transfer flavoprotein domain UP12_12860 PF01012 Electron transfer flavoprotein domain UP12_12865 PF00378 Enoyl-CoA hydratase/isomerase UP12_12870 PF08359 YsiA-like protein, C-terminal region UP12_12870 PF00440 Bacterial regulatory proteins, tetR family UP12_12875 PF00501 AMP-binding enzyme UP12_12875 PF13193 AMP-binding enzyme C-terminal domain UP12_12885 PF03994 Domain of Unknown Function (DUF350) UP12_12890 PF01713 Smr domain UP12_12890 PF00488 MutS domain V UP12_12895 PF14716 Helix-hairpin-helix domain UP12_12895 PF14791 DNA polymerase beta thumb UP12_12895 PF02811 PHP domain UP12_12900 PF02674 Colicin V production protein UP12_12905 PF05164 Cell division protein ZapA UP12_12910 PF11858 Domain of unknown function (DUF3378) UP12_12910 PF01351 Ribonuclease HII UP12_12915 PF03484 tRNA synthetase B5 domain UP12_12915 PF03483 B3/4 domain UP12_12915 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain UP12_12915 PF03147 Ferredoxin-fold anticodon binding domain UP12_12915 PF01588 Putative tRNA binding domain UP12_12920 PF01409 tRNA synthetases class II core domain (F) UP12_12920 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain UP12_12925 PF00588 SpoU rRNA Methylase family UP12_12925 PF08032 RNA 2'-O ribose methyltransferase substrate binding UP12_12930 PF14098 Small, acid-soluble spore protein I UP12_12935 PF02554 Carbon starvation protein CstA UP12_12935 PF13722 5TM C-terminal transporter carbon starvation CstA UP12_12940 PF05343 M42 glutamyl aminopeptidase UP12_12950 PF06961 Protein of unknown function (DUF1294) UP12_12955 PF00453 Ribosomal protein L20 UP12_12960 PF01632 Ribosomal protein L35 UP12_12965 PF05198 Translation initiation factor IF-3, N-terminal domain UP12_12965 PF00707 Translation initiation factor IF-3, C-terminal domain UP12_12970 PF04172 LrgB-like family UP12_12975 PF03788 LrgA family UP12_12980 PF00072 Response regulator receiver domain UP12_12980 PF04397 LytTr DNA-binding domain UP12_12985 PF07694 5TMR of 5TMR-LYT UP12_12985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_12985 PF06580 Histidine kinase UP12_12995 PF08447 PAS fold UP12_12995 PF13426 PAS domain UP12_12995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_13000 PF03129 Anticodon binding domain UP12_13000 PF02824 TGS domain UP12_13000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain UP12_13000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) UP12_13005 PF08812 YtxC-like family UP12_13010 PF09335 SNARE associated Golgi protein UP12_13015 PF07319 Primosomal protein DnaI N-terminus UP12_13015 PF01695 IstB-like ATP binding protein UP12_13020 PF07261 Replication initiation and membrane attachment UP12_13025 PF03477 ATP cone domain UP12_13035 PF02675 S-adenosylmethionine decarboxylase UP12_13040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_13040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain UP12_13045 PF01121 Dephospho-CoA kinase UP12_13050 PF02659 Putative manganese efflux pump UP12_13055 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain UP12_13055 PF06827 Zinc finger found in FPG and IleRS UP12_13055 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain UP12_13060 PF01367 5'-3' exonuclease, C-terminal SAM fold UP12_13060 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain UP12_13060 PF00476 DNA polymerase family A UP12_13065 PF16736 Single Cache-like UP12_13065 PF00989 PAS fold UP12_13065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_13065 PF00512 His Kinase A (phospho-acceptor) domain UP12_13070 PF00486 Transcriptional regulatory protein, C terminal UP12_13070 PF00072 Response regulator receiver domain UP12_13075 PF00056 lactate/malate dehydrogenase, NAD binding domain UP12_13075 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain UP12_13080 PF00180 Isocitrate/isopropylmalate dehydrogenase UP12_13085 PF00285 Citrate synthase, C-terminal domain UP12_13090 PF04284 Protein of unknown function (DUF441) UP12_13095 PF01594 AI-2E family transporter UP12_13100 PF04186 FxsA cytoplasmic membrane protein UP12_13105 PF02887 Pyruvate kinase, alpha/beta domain UP12_13105 PF00224 Pyruvate kinase, barrel domain UP12_13105 PF00391 PEP-utilising enzyme, mobile domain UP12_13110 PF00365 Phosphofructokinase UP12_13115 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit UP12_13120 PF17848 Acetyl-coA carboxylase zinc finger domain UP12_13120 PF01039 Carboxyl transferase domain UP12_13125 PF03949 Malic enzyme, NAD binding domain UP12_13125 PF00390 Malic enzyme, N-terminal domain UP12_13130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain UP12_13130 PF07733 Bacterial DNA polymerase III alpha NTPase domain UP12_13130 PF01336 OB-fold nucleic acid binding domain UP12_13130 PF14579 Helix-hairpin-helix motif UP12_13130 PF02811 PHP domain UP12_13135 PF14034 Sporulation protein YtrH UP12_13150 PF01368 DHH family UP12_13150 PF02272 DHHA1 domain UP12_13155 PF14007 YtpI-like protein UP12_13160 PF00571 CBS domain UP12_13160 PF07085 DRTGG domain UP12_13160 PF03061 Thioesterase superfamily UP12_13160 PF00392 Bacterial regulatory proteins, gntR family UP12_13180 PF14698 Argininosuccinate lyase C-terminal UP12_13180 PF00206 Lyase UP12_13185 PF00764 Arginosuccinate synthase UP12_13190 PF00994 Probable molybdopterin binding domain UP12_13195 PF00871 Acetokinase family UP12_13200 PF02384 N-6 DNA Methylase UP12_13205 PF08534 Redoxin UP12_13210 PF09579 Sporulation protein YtfJ (Spore_YtfJ) UP12_13215 PF11167 Protein of unknown function (DUF2953) UP12_13220 PF06271 RDD family UP12_13225 PF01343 Peptidase family S49 UP12_13230 PF01513 ATP-NAD kinase UP12_13235 PF00270 DEAD/DEAH box helicase UP12_13235 PF03880 DbpA RNA binding domain UP12_13235 PF00271 Helicase conserved C-terminal domain UP12_13240 PF00487 Fatty acid desaturase UP12_13245 PF07730 Histidine kinase UP12_13250 PF00072 Response regulator receiver domain UP12_13250 PF00196 Bacterial regulatory proteins, luxR family UP12_13255 PF01497 Periplasmic binding protein UP12_13260 PF00486 Transcriptional regulatory protein, C terminal UP12_13260 PF00072 Response regulator receiver domain UP12_13265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_13270 PF01098 Cell cycle protein UP12_13275 PF03551 Transcriptional regulator PadR-like family UP12_13280 PF00005 ABC transporter UP12_13285 PF02687 FtsX-like permease family UP12_13290 PF01979 Amidohydrolase family UP12_13295 PF02525 Flavodoxin-like fold UP12_13305 PF01810 LysE type translocator UP12_13310 PF00501 AMP-binding enzyme UP12_13310 PF13193 AMP-binding enzyme C-terminal domain UP12_13315 PF00269 Small, acid-soluble spore proteins, alpha/beta type UP12_13320 PF02568 Thiamine biosynthesis protein (ThiI) UP12_13320 PF02926 THUMP domain UP12_13325 PF00266 Aminotransferase class-V UP12_13330 PF05525 Branched-chain amino acid transport protein UP12_13335 PF05525 Branched-chain amino acid transport protein UP12_13340 PF06160 Septation ring formation regulator, EzrA UP12_13345 PF02811 PHP domain UP12_13350 PF00440 Bacterial regulatory proteins, tetR family UP12_13355 PF13185 GAF domain UP12_13360 PF00163 Ribosomal protein S4/S9 N-terminal domain UP12_13360 PF01479 S4 domain UP12_13375 PF00857 Isochorismatase family UP12_13385 PF01674 Lipase (class 2) UP12_13390 PF01479 S4 domain UP12_13390 PF00579 tRNA synthetases class I (W and Y) UP12_13395 PF00501 AMP-binding enzyme UP12_13395 PF13193 AMP-binding enzyme C-terminal domain UP12_13400 PF00583 Acetyltransferase (GNAT) family UP12_13405 PF00571 CBS domain UP12_13410 PF00850 Histone deacetylase domain UP12_13415 PF00356 Bacterial regulatory proteins, lacI family UP12_13420 PF00793 DAHP synthetase I family UP12_13420 PF01817 Chorismate mutase type II UP12_13425 PF11009 Protein of unknown function (DUF2847) UP12_13430 PF12732 YtxH-like protein UP12_13435 PF06103 Bacterial protein of unknown function (DUF948) UP12_13440 PF08245 Mur ligase middle domain UP12_13440 PF02875 Mur ligase family, glutamate ligase domain UP12_13440 PF01225 Mur ligase family, catalytic domain UP12_13445 PF01580 FtsK/SpoIIIE family UP12_13445 PF09397 Ftsk gamma domain UP12_13445 PF17854 FtsK alpha domain UP12_13450 PF01588 Putative tRNA binding domain UP12_13450 PF14794 Domain of unknown function (DUF4479) UP12_13455 PF07285 Protein of unknown function (DUF1444) UP12_13460 PF00085 Thioredoxin UP12_13470 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ UP12_13475 PF05343 M42 glutamyl aminopeptidase UP12_13480 PF03413 Peptidase propeptide and YPEB domain UP12_13485 PF03949 Malic enzyme, NAD binding domain UP12_13485 PF00390 Malic enzyme, N-terminal domain UP12_13490 PF00753 Metallo-beta-lactamase superfamily UP12_13495 PF02390 Putative methyltransferase UP12_13500 PF14165 YtzH-like protein UP12_13505 PF01636 Phosphotransferase enzyme family UP12_13510 PF00781 Diacylglycerol kinase catalytic domain UP12_13525 PF00291 Pyridoxal-phosphate dependent enzyme UP12_13530 PF03575 Peptidase family S51 UP12_13535 PF01546 Peptidase family M20/M25/M40 UP12_13540 PF00860 Permease family UP12_13545 PF08220 DeoR-like helix-turn-helix domain UP12_13550 PF01479 S4 domain UP12_13550 PF00849 RNA pseudouridylate synthase UP12_13555 PF01943 Polysaccharide biosynthesis protein UP12_13555 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_13570 PF02028 BCCT, betaine/carnitine/choline family transporter UP12_13575 PF03691 Uncharacterised protein family (UPF0167) UP12_13580 PF10957 Sporulation protein Cse60 UP12_13585 PF00581 Rhodanese-like domain UP12_13590 PF04854 Protein of unknown function, DUF624 UP12_13595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_13595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain UP12_13605 PF07470 Glycosyl Hydrolase Family 88 UP12_13610 PF00528 Binding-protein-dependent transport system inner membrane component UP12_13615 PF17853 GGDEF-like domain UP12_13615 PF12833 Helix-turn-helix domain UP12_13620 PF01638 HxlR-like helix-turn-helix UP12_13625 PF07690 Major Facilitator Superfamily UP12_13630 PF00248 Aldo/keto reductase family UP12_13635 PF13416 Bacterial extracellular solute-binding protein UP12_13640 PF00528 Binding-protein-dependent transport system inner membrane component UP12_13645 PF01370 NAD dependent epimerase/dehydratase family UP12_13650 PF01738 Dienelactone hydrolase family UP12_13655 PF09334 tRNA synthetases class I (M) UP12_13655 PF13603 Leucyl-tRNA synthetase, Domain 2 UP12_13655 PF00133 tRNA synthetases class I (I, L, M and V) UP12_13655 PF08264 Anticodon-binding domain of tRNA UP12_13660 PF14074 Protein of unknown function (DUF4257) UP12_13665 PF13426 PAS domain UP12_13665 PF01740 STAS domain UP12_13670 PF04791 LMBR1-like membrane protein UP12_13675 PF02687 FtsX-like permease family UP12_13675 PF12704 MacB-like periplasmic core domain UP12_13680 PF00005 ABC transporter UP12_13690 PF00005 ABC transporter UP12_13695 PF00392 Bacterial regulatory proteins, gntR family UP12_13705 PF10732 Protein of unknown function (DUF2524) UP12_13710 PF04055 Radical SAM superfamily UP12_13710 PF16199 Radical_SAM C-terminal domain UP12_13715 PF06962 Putative rRNA methylase UP12_13720 PF10776 Protein of unknown function (DUF2600) UP12_13725 PF12146 Serine aminopeptidase, S33 UP12_13730 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_13735 PF00733 Asparagine synthase UP12_13735 PF13537 Glutamine amidotransferase domain UP12_13740 PF02773 S-adenosylmethionine synthetase, C-terminal domain UP12_13740 PF00438 S-adenosylmethionine synthetase, N-terminal domain UP12_13740 PF02772 S-adenosylmethionine synthetase, central domain UP12_13745 PF01293 Phosphoenolpyruvate carboxykinase UP12_13750 PF10763 Protein of unknown function (DUF2584) UP12_13755 PF00326 Prolyl oligopeptidase family UP12_13760 PF01593 Flavin containing amine oxidoreductase UP12_13765 PF00535 Glycosyl transferase family 2 UP12_13785 PF00005 ABC transporter UP12_13790 PF00528 Binding-protein-dependent transport system inner membrane component UP12_13795 PF00293 NUDIX domain UP12_13800 PF02342 TerD domain UP12_13815 PF05105 Bacteriophage holin family UP12_13825 PF00210 Ferritin-like domain UP12_13835 PF13115 YtkA-like UP12_13840 PF02664 S-Ribosylhomocysteinase (LuxS) UP12_13845 PF01809 Putative membrane protein insertion efficiency factor UP12_13850 PF00484 Carbonic anhydrase UP12_13855 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment UP12_13855 PF01297 Zinc-uptake complex component A periplasmic UP12_13860 PF01197 Ribosomal protein L31 UP12_13870 PF01654 Cytochrome bd terminal oxidase subunit I UP12_13875 PF02322 Cytochrome bd terminal oxidase subunit II UP12_13880 PF07561 Domain of Unknown Function (DUF1540) UP12_13890 PF13378 Enolase C-terminal domain-like UP12_13890 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UP12_13895 PF00501 AMP-binding enzyme UP12_13895 PF13193 AMP-binding enzyme C-terminal domain UP12_13900 PF00378 Enoyl-CoA hydratase/isomerase UP12_13905 PF00561 alpha/beta hydrolase fold UP12_13910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_13910 PF16582 Middle domain of thiamine pyrophosphate UP12_13910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_13915 PF00425 chorismate binding enzyme UP12_13920 PF01040 UbiA prenyltransferase family UP12_13925 PF01258 Prokaryotic dksA/traR C4-type zinc finger UP12_13930 PF03073 TspO/MBR family UP12_14055 PF09515 Thiamine transporter protein (Thia_YuaJ) UP12_14065 PF00583 Acetyltransferase (GNAT) family UP12_14070 PF06803 Protein of unknown function (DUF1232) UP12_14075 PF01098 Cell cycle protein UP12_14080 PF01098 Cell cycle protein UP12_14085 PF01145 SPFH domain / Band 7 family UP12_14085 PF15975 Flotillin UP12_14095 PF12867 DinB superfamily UP12_14100 PF00465 Iron-containing alcohol dehydrogenase UP12_14115 PF13176 Tetratricopeptide repeat UP12_14115 PF18801 response regulator aspartate phosphatase H, N terminal UP12_14135 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_14135 PF01471 Putative peptidoglycan binding domain UP12_14140 PF04688 SPP1 phage holin UP12_14145 PF10960 BhlA holin family UP12_14170 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) UP12_14175 PF04865 Baseplate J-like protein UP12_14180 PF10934 Protein of unknown function (DUF2634) UP12_14185 PF10844 Protein of unknown function (DUF2577) UP12_14195 PF01476 LysM domain UP12_14200 PF01464 Transglycosylase SLT domain UP12_14200 PF01464 Transglycosylase SLT domain UP12_14205 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC UP12_14215 PF09393 Phage tail tube protein UP12_14220 PF04984 Phage tail sheath protein subtilisin-like domain UP12_14220 PF17481 Phage tail sheath protein beta-sandwich domain UP12_14220 PF17482 Phage tail sheath C-terminal domain UP12_14235 PF04883 Bacteriophage HK97-gp10, putative tail-component UP12_14240 PF12206 Domain of unknown function (DUF3599) UP12_14245 PF11436 Protein of unknown function (DUF3199) UP12_14250 PF14553 YqbF, hypothetical protein domain UP12_14255 PF05065 Phage capsid family UP12_14260 PF14550 Putative phage serine protease XkdF UP12_14270 PF04233 Phage Mu protein F like protein UP12_14275 PF04860 Phage portal protein UP12_14280 PF04466 Phage terminase large subunit UP12_14280 PF17288 Terminase RNAseH like domain UP12_14415 PF00772 DnaB-like helicase N terminal domain UP12_14415 PF03796 DnaB-like helicase C terminal domain UP12_14490 PF06114 IrrE N-terminal-like domain UP12_14495 PF00589 Phage integrase family UP12_14495 PF14659 Phage integrase, N-terminal SAM-like domain UP12_14510 PF01471 Putative peptidoglycan binding domain UP12_14510 PF01510 N-acetylmuramoyl-L-alanine amidase UP12_14515 PF04688 SPP1 phage holin UP12_14520 PF10960 BhlA holin family UP12_14550 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) UP12_14555 PF04865 Baseplate J-like protein UP12_14560 PF10934 Protein of unknown function (DUF2634) UP12_14565 PF10844 Protein of unknown function (DUF2577) UP12_14575 PF01476 LysM domain UP12_14580 PF01464 Transglycosylase SLT domain UP12_14580 PF01464 Transglycosylase SLT domain UP12_14585 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC UP12_14590 PF09393 Phage tail tube protein UP12_14595 PF04984 Phage tail sheath protein subtilisin-like domain UP12_14595 PF17482 Phage tail sheath C-terminal domain UP12_14595 PF17481 Phage tail sheath protein beta-sandwich domain UP12_14610 PF04883 Bacteriophage HK97-gp10, putative tail-component UP12_14615 PF12206 Domain of unknown function (DUF3599) UP12_14620 PF11436 Protein of unknown function (DUF3199) UP12_14625 PF05065 Phage capsid family UP12_14630 PF14550 Putative phage serine protease XkdF UP12_14635 PF04860 Phage portal protein UP12_14640 PF17288 Terminase RNAseH like domain UP12_14640 PF04466 Phage terminase large subunit UP12_14645 PF10668 Phage terminase small subunit UP12_14650 PF08281 Sigma-70, region 4 UP12_14655 PF17356 Phage-like element PBSX protein XtrA UP12_14660 PF05866 Endodeoxyribonuclease RusA UP12_14675 PF01381 Helix-turn-helix UP12_14685 PF06968 Biotin and Thiamin Synthesis associated domain UP12_14685 PF04055 Radical SAM superfamily UP12_14695 PF02673 Bacitracin resistance protein BacA UP12_14700 PF01594 AI-2E family transporter UP12_14710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain UP12_14710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_14715 PF01965 DJ-1/PfpI family UP12_14720 PF02743 Cache domain UP12_14720 PF00672 HAMP domain UP12_14720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_14725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_14725 PF00672 HAMP domain UP12_14725 PF02743 Cache domain UP12_14730 PF02743 Cache domain UP12_14730 PF00672 HAMP domain UP12_14730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_14735 PF00672 HAMP domain UP12_14735 PF02743 Cache domain UP12_14735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_14750 PF03060 Nitronate monooxygenase UP12_14755 PF01894 Uncharacterised protein family UPF0047 UP12_14760 PF00571 CBS domain UP12_14760 PF03471 Transporter associated domain UP12_14760 PF01595 Cyclin M transmembrane N-terminal domain UP12_14765 PF04298 Putative neutral zinc metallopeptidase UP12_14775 PF07885 Ion channel UP12_14775 PF02254 TrkA-N domain UP12_14780 PF08868 YugN-like family UP12_14790 PF00342 Phosphoglucose isomerase UP12_14795 PF00465 Iron-containing alcohol dehydrogenase UP12_14800 PF00465 Iron-containing alcohol dehydrogenase UP12_14805 PF04070 Domain of unknown function (DUF378) UP12_14810 PF00575 S1 RNA binding domain UP12_14815 PF00155 Aminotransferase class I and II UP12_14820 PF01037 Lrp/AsnC ligand binding domain UP12_14825 PF08386 TAP-like protein UP12_14825 PF00561 alpha/beta hydrolase fold UP12_14830 PF08958 Domain of unknown function (DUF1871) UP12_14835 PF00155 Aminotransferase class I and II UP12_14840 PF00512 His Kinase A (phospho-acceptor) domain UP12_14840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_14850 PF08810 Kinase associated protein B UP12_14855 PF00929 Exonuclease UP12_14860 PF07690 Major Facilitator Superfamily UP12_14865 PF00912 Transglycosylase UP12_14865 PF00905 Penicillin binding protein transpeptidase domain UP12_14870 PF04134 Protein of unknown function, DUF393 UP12_14875 PF17328 Family of unknown function (DUF5366) UP12_14880 PF17203 Single cache domain 3 UP12_14880 PF00989 PAS fold UP12_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_14880 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain UP12_14885 PF00072 Response regulator receiver domain UP12_14910 PF03390 2-hydroxycarboxylate transporter family UP12_14920 PF00361 Proton-conducting membrane transporter UP12_14920 PF13244 Domain of unknown function (DUF4040) UP12_14920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus UP12_14925 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter UP12_14930 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L UP12_14935 PF00361 Proton-conducting membrane transporter UP12_14940 PF01899 Na+/H+ ion antiporter subunit UP12_14945 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) UP12_14950 PF03334 Na+/H+ antiporter subunit UP12_14955 PF03061 Thioesterase superfamily UP12_14960 PF00072 Response regulator receiver domain UP12_14960 PF00196 Bacterial regulatory proteins, luxR family UP12_14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_14965 PF07730 Histidine kinase UP12_14970 PF00348 Polyprenyl synthetase UP12_14975 PF08181 DegQ (SacQ) family UP12_14985 PF08668 HDOD domain UP12_14985 PF00563 EAL domain UP12_14990 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain UP12_14990 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family UP12_14990 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain UP12_14995 PF00857 Isochorismatase family UP12_15000 PF07997 Protein of unknown function (DUF1694) UP12_15005 PF14166 YueH-like protein UP12_15010 PF10676 Spore germination protein gerPA/gerPF UP12_15015 PF10676 Spore germination protein gerPA/gerPF UP12_15020 PF01594 AI-2E family transporter UP12_15025 PF10842 Protein of unknown function (DUF2642) UP12_15035 PF01966 HD domain UP12_15040 PF00106 short chain dehydrogenase UP12_15045 PF17355 Family of unknown function (DUF5383) UP12_15055 PF01580 FtsK/SpoIIIE family UP12_15055 PF12538 DNA transporter UP12_15060 PF10140 WXG100 protein secretion system (Wss), protein YukC UP12_15065 PF08817 WXG100 protein secretion system (Wss), protein YukD UP12_15070 PF06013 Proteins of 100 residues with WXG UP12_15075 PF17853 GGDEF-like domain UP12_15075 PF13556 PucR C-terminal helix-turn-helix domain UP12_15075 PF06018 CodY GAF-like domain UP12_15080 PF05222 Alanine dehydrogenase/PNT, N-terminal domain UP12_15080 PF01262 Alanine dehydrogenase/PNT, C-terminal domain UP12_15085 PF02632 BioY family UP12_15090 PF07070 SpoOM protein UP12_15095 PF13726 Na+-H+ antiporter family UP12_15095 PF03553 Na+/H+ antiporter family UP12_15100 PF00883 Cytosol aminopeptidase family, catalytic domain UP12_15100 PF02789 Cytosol aminopeptidase family, N-terminal domain UP12_15105 PF02681 Divergent PAP2 family UP12_15110 PF06725 3D domain UP12_15115 PF14068 Putative membrane protein UP12_15120 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_15125 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_15140 PF01521 Iron-sulphur cluster biosynthesis UP12_15145 PF01678 Diaminopimelate epimerase UP12_15150 PF07293 Protein of unknown function (DUF1450) UP12_15155 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_15165 PF07315 Protein of unknown function (DUF1462) UP12_15170 PF01106 NifU-like domain UP12_15175 PF00326 Prolyl oligopeptidase family UP12_15175 PF07676 WD40-like Beta Propeller Repeat UP12_15180 PF00288 GHMP kinases N terminal domain UP12_15180 PF08544 GHMP kinases C terminal UP12_15185 PF00291 Pyridoxal-phosphate dependent enzyme UP12_15190 PF01842 ACT domain UP12_15190 PF03447 Homoserine dehydrogenase, NAD binding domain UP12_15190 PF00742 Homoserine dehydrogenase UP12_15195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UP12_15195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UP12_15205 PF04608 Phosphatidylglycerophosphatase A UP12_15210 PF13344 Haloacid dehalogenase-like hydrolase UP12_15215 PF01934 Protein of unknown function DUF86 UP12_15220 PF06265 Protein of unknown function (DUF1027) UP12_15225 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) UP12_15230 PF04055 Radical SAM superfamily UP12_15230 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family UP12_15240 PF01551 Peptidase family M23 UP12_15245 PF09560 Sporulation protein YunB (Spo_YunB) UP12_15250 PF08827 Domain of unknown function (DUF1805) UP12_15255 PF02872 5'-nucleotidase, C-terminal domain UP12_15260 PF01904 Protein of unknown function DUF72 UP12_15265 PF17853 GGDEF-like domain UP12_15265 PF13556 PucR C-terminal helix-turn-helix domain UP12_15265 PF07905 Purine catabolism regulatory protein-like family UP12_15270 PF00190 Cupin UP12_15275 PF07690 Major Facilitator Superfamily UP12_15280 PF00266 Aminotransferase class-V UP12_15285 PF04231 Endonuclease I UP12_15295 PF01032 FecCD transport family UP12_15300 PF01032 FecCD transport family UP12_15305 PF01497 Periplasmic binding protein UP12_15315 PF07859 alpha/beta hydrolase fold UP12_15320 PF06146 Phosphate-starvation-inducible E UP12_15325 PF00512 His Kinase A (phospho-acceptor) domain UP12_15330 PF00072 Response regulator receiver domain UP12_15330 PF00486 Transcriptional regulatory protein, C terminal UP12_15335 PF04235 Protein of unknown function (DUF418) UP12_15345 PF02525 Flavodoxin-like fold UP12_15350 PF12161 HsdM N-terminal domain UP12_15350 PF02384 N-6 DNA Methylase UP12_15365 PF18766 SWI2/SNF2 ATPase UP12_15365 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) UP12_15365 PF12008 Type I restriction and modification enzyme - subunit R C terminal UP12_15375 PF01458 Uncharacterized protein family (UPF0051) UP12_15380 PF01592 NifU-like N terminal domain UP12_15385 PF00266 Aminotransferase class-V UP12_15390 PF01458 Uncharacterized protein family (UPF0051) UP12_15395 PF00005 ABC transporter UP12_15400 PF02627 Carboxymuconolactone decarboxylase family UP12_15405 PF03180 NLPA lipoprotein UP12_15410 PF00528 Binding-protein-dependent transport system inner membrane component UP12_15415 PF09383 NIL domain UP12_15415 PF00005 ABC transporter UP12_15420 PF02036 SCP-2 sterol transfer family UP12_15425 PF00085 Thioredoxin UP12_15430 PF01751 Toprim domain UP12_15435 PF10830 Protein of unknown function (DUF2553) UP12_15440 PF01597 Glycine cleavage H-protein UP12_15445 PF03960 ArsC family UP12_15450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_15450 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_15450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_15455 PF00108 Thiolase, N-terminal domain UP12_15455 PF02803 Thiolase, C-terminal domain UP12_15460 PF00378 Enoyl-CoA hydratase/isomerase UP12_15460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UP12_15460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UP12_15470 PF07875 Coat F domain UP12_15475 PF10835 Protein of unknown function (DUF2573) UP12_15480 PF00005 ABC transporter UP12_15490 PF00106 short chain dehydrogenase UP12_15495 PF13180 PDZ domain UP12_15500 PF00072 Response regulator receiver domain UP12_15500 PF00486 Transcriptional regulatory protein, C terminal UP12_15505 PF00512 His Kinase A (phospho-acceptor) domain UP12_15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_15505 PF00672 HAMP domain UP12_15510 PF00440 Bacterial regulatory proteins, tetR family UP12_15515 PF00206 Lyase UP12_15515 PF10415 Fumarase C C-terminus UP12_15520 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_15525 PF03845 Spore germination protein UP12_15530 PF05504 Spore germination B3/ GerAC like, C-terminal UP12_15540 PF00196 Bacterial regulatory proteins, luxR family UP12_15540 PF00072 Response regulator receiver domain UP12_15545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_15545 PF07730 Histidine kinase UP12_15545 PF00672 HAMP domain UP12_15550 PF09922 Cell wall-active antibiotics response 4TMS YvqF UP12_15560 PF04012 PspA/IM30 family UP12_15575 PF00005 ABC transporter UP12_15580 PF01032 FecCD transport family UP12_15585 PF01497 Periplasmic binding protein UP12_15590 PF00295 Glycosyl hydrolases family 28 UP12_15595 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus UP12_15595 PF08666 SAF domain UP12_15600 PF08125 Mannitol dehydrogenase C-terminal domain UP12_15600 PF01232 Mannitol dehydrogenase Rossmann domain UP12_15605 PF00356 Bacterial regulatory proteins, lacI family UP12_15610 PF02614 Glucuronate isomerase UP12_15615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_15615 PF00512 His Kinase A (phospho-acceptor) domain UP12_15620 PF00072 Response regulator receiver domain UP12_15620 PF00486 Transcriptional regulatory protein, C terminal UP12_15625 PF00005 ABC transporter UP12_15630 PF01032 FecCD transport family UP12_15635 PF01032 FecCD transport family UP12_15640 PF01497 Periplasmic binding protein UP12_15645 PF13520 Amino acid permease UP12_15655 PF09575 Small spore protein J (Spore_SspJ) UP12_15665 PF04307 LexA-binding, inner membrane-associated putative hydrolase UP12_15670 PF00884 Sulfatase UP12_15680 PF00528 Binding-protein-dependent transport system inner membrane component UP12_15685 PF00248 Aldo/keto reductase family UP12_15690 PF00480 ROK family UP12_15695 PF00999 Sodium/hydrogen exchanger family UP12_15700 PF03458 UPF0126 domain UP12_15705 PF02600 Disulfide bond formation protein DsbB UP12_15710 PF13462 Thioredoxin UP12_15715 PF00403 Heavy-metal-associated domain UP12_15720 PF00005 ABC transporter UP12_15725 PF00950 ABC 3 transport family UP12_15730 PF01297 Zinc-uptake complex component A periplasmic UP12_15740 PF00440 Bacterial regulatory proteins, tetR family UP12_15740 PF13977 BetI-type transcriptional repressor, C-terminal UP12_15745 PF08664 YcbB domain UP12_15745 PF00072 Response regulator receiver domain UP12_15750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_15755 PF00206 Lyase UP12_15755 PF10415 Fumarase C C-terminus UP12_15760 PF00375 Sodium:dicarboxylate symporter family UP12_15765 PF00403 Heavy-metal-associated domain UP12_15770 PF00403 Heavy-metal-associated domain UP12_15775 PF02583 Metal-sensitive transcriptional repressor UP12_15785 PF00072 Response regulator receiver domain UP12_15785 PF00990 Diguanylate cyclase, GGDEF domain UP12_15800 PF01668 SmpB protein UP12_15805 PF17876 Cold shock domain UP12_15805 PF08206 Ribonuclease B OB domain UP12_15805 PF00773 RNB domain UP12_15805 PF00575 S1 RNA binding domain UP12_15810 PF12146 Serine aminopeptidase, S33 UP12_15815 PF03840 Preprotein translocase SecG subunit UP12_15820 PF18277 AbrB C-terminal domain UP12_15820 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin UP12_15825 PF01381 Helix-turn-helix UP12_15840 PF01638 HxlR-like helix-turn-helix UP12_15845 PF00528 Binding-protein-dependent transport system inner membrane component UP12_15850 PF04069 Substrate binding domain of ABC-type glycine betaine transport system UP12_15855 PF00528 Binding-protein-dependent transport system inner membrane component UP12_15860 PF00005 ABC transporter UP12_15860 PF00571 CBS domain UP12_15865 PF12802 MarR family UP12_15870 PF01914 MarC family integral membrane protein UP12_15880 PF00583 Acetyltransferase (GNAT) family UP12_15900 PF00005 ABC transporter UP12_15910 PF00113 Enolase, C-terminal TIM barrel domain UP12_15910 PF03952 Enolase, N-terminal domain UP12_15915 PF01676 Metalloenzyme superfamily UP12_15915 PF06415 BPG-independent PGAM N-terminus (iPGM_N) UP12_15920 PF00121 Triosephosphate isomerase UP12_15925 PF00162 Phosphoglycerate kinase UP12_15930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain UP12_15930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_15935 PF04198 Putative sugar-binding domain UP12_15940 PF00324 Amino acid permease UP12_15945 PF00202 Aminotransferase class-III UP12_15950 PF02954 Bacterial regulatory protein, Fis family UP12_15950 PF13426 PAS domain UP12_15950 PF00158 Sigma-54 interaction domain UP12_15955 PF07729 FCD domain UP12_15955 PF00392 Bacterial regulatory proteins, gntR family UP12_15960 PF04552 Sigma-54, DNA binding domain UP12_15960 PF00309 Sigma-54 factor, Activator interacting domain (AID) UP12_15960 PF04963 Sigma-54 factor, core binding domain UP12_15965 PF09628 YvfG protein UP12_15970 PF01554 MatE UP12_15975 PF00005 ABC transporter UP12_15975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_15980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region UP12_15980 PF00005 ABC transporter UP12_15985 PF00528 Binding-protein-dependent transport system inner membrane component UP12_15990 PF00528 Binding-protein-dependent transport system inner membrane component UP12_15995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_16000 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UP12_16005 PF00132 Bacterial transferase hexapeptide (six repeats) UP12_16005 PF17836 PglD N-terminal domain UP12_16010 PF02397 Bacterial sugar transferase UP12_16015 PF01943 Polysaccharide biosynthesis protein UP12_16015 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_16020 PF04230 Polysaccharide pyruvyl transferase UP12_16025 PF00535 Glycosyl transferase family 2 UP12_16035 PF00534 Glycosyl transferases group 1 UP12_16035 PF13439 Glycosyltransferase Family 4 UP12_16040 PF00535 Glycosyl transferase family 2 UP12_16045 PF00534 Glycosyl transferases group 1 UP12_16045 PF13439 Glycosyltransferase Family 4 UP12_16050 PF02719 Polysaccharide biosynthesis protein UP12_16055 PF13614 AAA domain UP12_16060 PF02706 Chain length determinant protein UP12_16065 PF08671 Anti-repressor SinI UP12_16065 PF01381 Helix-turn-helix UP12_16075 PF01497 Periplasmic binding protein UP12_16080 PF01032 FecCD transport family UP12_16085 PF01032 FecCD transport family UP12_16090 PF01522 Polysaccharide deacetylase UP12_16090 PF11738 Protein of unknown function (DUF3298) UP12_16090 PF13739 Deacetylase PdaC UP12_16100 PF00005 ABC transporter UP12_16105 PF00005 ABC transporter UP12_16110 PF00528 Binding-protein-dependent transport system inner membrane component UP12_16110 PF12911 N-terminal TM domain of oligopeptide transport permease C UP12_16115 PF00528 Binding-protein-dependent transport system inner membrane component UP12_16120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle UP12_16125 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase UP12_16150 PF00574 Clp protease UP12_16155 PF03641 Possible lysine decarboxylase UP12_16160 PF03819 MazG nucleotide pyrophosphohydrolase domain UP12_16165 PF00916 Sulfate permease family UP12_16165 PF01740 STAS domain UP12_16170 PF00484 Carbonic anhydrase UP12_16175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UP12_16175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UP12_16180 PF00545 ribonuclease UP12_16185 PF00375 Sodium:dicarboxylate symporter family UP12_16190 PF00266 Aminotransferase class-V UP12_16200 PF00797 N-acetyltransferase UP12_16205 PF00381 PTS HPr component phosphorylation site UP12_16210 PF14527 WhiA LAGLIDADG-like domain UP12_16210 PF02650 WhiA C-terminal HTH domain UP12_16210 PF10298 WhiA N-terminal LAGLIDADG-like domain UP12_16215 PF01933 Uncharacterised protein family UPF0052 UP12_16220 PF03668 P-loop ATPase protein family UP12_16225 PF00293 NUDIX domain UP12_16230 PF07992 Pyridine nucleotide-disulphide oxidoreductase UP12_16235 PF00877 NlpC/P60 family UP12_16245 PF01502 Phosphoribosyl-AMP cyclohydrolase UP12_16245 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase UP12_16250 PF00977 Histidine biosynthesis protein UP12_16255 PF00977 Histidine biosynthesis protein UP12_16260 PF00117 Glutamine amidotransferase class-I UP12_16265 PF00475 Imidazoleglycerol-phosphate dehydratase UP12_16270 PF00815 Histidinol dehydrogenase UP12_16275 PF01634 ATP phosphoribosyltransferase UP12_16280 PF13393 Histidyl-tRNA synthetase UP12_16285 PF13529 Peptidase_C39 like family UP12_16295 PF13460 NAD(P)H-binding UP12_16300 PF02082 Transcriptional regulator UP12_16305 PF14602 Hexapeptide repeat of succinyl-transferase UP12_16310 PF13419 Haloacid dehalogenase-like hydrolase UP12_16315 PF07670 Nucleoside recognition UP12_16320 PF01790 Prolipoprotein diacylglyceryl transferase UP12_16325 PF02603 HPr Serine kinase N terminus UP12_16325 PF07475 HPr Serine kinase C-terminal domain UP12_16330 PF01979 Amidohydrolase family UP12_16335 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase UP12_16345 PF00149 Calcineurin-like phosphoesterase UP12_16350 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV UP12_16355 PF04024 PspC domain UP12_16360 PF13349 Putative adhesin UP12_16375 PF00005 ABC transporter UP12_16375 PF17755 UvrA DNA-binding domain UP12_16375 PF17760 UvrA interaction domain UP12_16380 PF02151 UvrB/uvrC motif UP12_16380 PF00271 Helicase conserved C-terminal domain UP12_16380 PF12344 Ultra-violet resistance protein B UP12_16380 PF17757 UvrB interaction domain UP12_16380 PF04851 Type III restriction enzyme, res subunit UP12_16385 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) UP12_16395 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain UP12_16395 PF00391 PEP-utilising enzyme, mobile domain UP12_16400 PF00440 Bacterial regulatory proteins, tetR family UP12_16405 PF07690 Major Facilitator Superfamily UP12_16415 PF00486 Transcriptional regulatory protein, C terminal UP12_16415 PF00072 Response regulator receiver domain UP12_16420 PF16736 Single Cache-like UP12_16420 PF00989 PAS fold UP12_16420 PF00512 His Kinase A (phospho-acceptor) domain UP12_16420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_16425 PF00324 Amino acid permease UP12_16430 PF00881 Nitroreductase family UP12_16435 PF01638 HxlR-like helix-turn-helix UP12_16440 PF17820 PDZ domain UP12_16445 PF17423 Swarming motility protein UP12_16450 PF17820 PDZ domain UP12_16450 PF03572 Peptidase family S41 UP12_16450 PF01471 Putative peptidoglycan binding domain UP12_16455 PF01925 Sulfite exporter TauE/SafE UP12_16460 PF00877 NlpC/P60 family UP12_16465 PF18075 FtsX extracellular domain UP12_16465 PF02687 FtsX-like permease family UP12_16470 PF00005 ABC transporter UP12_16475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III UP12_16480 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 UP12_16480 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) UP12_16495 PF03462 PCRF domain UP12_16495 PF00472 RF-1 domain UP12_16500 PF07517 SecA DEAD-like domain UP12_16500 PF02810 SEC-C motif UP12_16500 PF01043 SecA preprotein cross-linking domain UP12_16500 PF07516 SecA Wing and Scaffold domain UP12_16505 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein UP12_16505 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus UP12_16510 PF00672 HAMP domain UP12_16510 PF02743 Cache domain UP12_16510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_16525 PF02561 Flagellar protein FliS UP12_16530 PF07195 Flagellar hook-associated protein 2 C-terminus UP12_16530 PF02465 Flagellar hook-associated protein 2 N-terminus UP12_16530 PF07196 Flagellin hook IN motif UP12_16535 PF03646 FlaG protein UP12_16540 PF02599 Global regulator protein family UP12_16545 PF02623 FliW protein UP12_16555 PF00669 Bacterial flagellin N-terminal helical region UP12_16555 PF00700 Bacterial flagellin C-terminal helical region UP12_16560 PF00460 Flagella basal body rod protein UP12_16560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_16565 PF05130 FlgN protein UP12_16585 PF10719 Late competence development protein ComFB UP12_16590 PF04851 Type III restriction enzyme, res subunit UP12_16590 PF00271 Helicase conserved C-terminal domain UP12_16595 PF02645 Uncharacterised protein, DegV family COG1307 UP12_16600 PF00072 Response regulator receiver domain UP12_16600 PF00196 Bacterial regulatory proteins, luxR family UP12_16605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_16605 PF05384 Sensor protein DegS UP12_16605 PF07730 Histidine kinase UP12_16610 PF01205 Uncharacterized protein family UPF0029 UP12_16610 PF09186 Domain of unknown function (DUF1949) UP12_16615 PF03816 Cell envelope-related transcriptional attenuator domain UP12_16620 PF00953 Glycosyl transferase family 4 UP12_16630 PF00535 Glycosyl transferase family 2 UP12_16635 PF02706 Chain length determinant protein UP12_16640 PF04932 O-Antigen ligase UP12_16645 PF16363 GDP-mannose 4,6 dehydratase UP12_16650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UP12_16650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain UP12_16650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UP12_16655 PF13439 Glycosyltransferase Family 4 UP12_16655 PF00534 Glycosyl transferases group 1 UP12_16660 PF01943 Polysaccharide biosynthesis protein UP12_16660 PF14667 Polysaccharide biosynthesis C-terminal domain UP12_16665 PF02397 Bacterial sugar transferase UP12_16675 PF04122 Putative cell wall binding repeat 2 UP12_16675 PF01520 N-acetylmuramoyl-L-alanine amidase UP12_16680 PF04122 Putative cell wall binding repeat 2 UP12_16680 PF08486 Stage II sporulation protein UP12_16690 PF03816 Cell envelope-related transcriptional attenuator domain UP12_16695 PF02350 UDP-N-acetylglucosamine 2-epimerase UP12_16700 PF00483 Nucleotidyl transferase UP12_16705 PF00005 ABC transporter UP12_16710 PF01061 ABC-2 type transporter UP12_16715 PF00535 Glycosyl transferase family 2 UP12_16715 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_16720 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_16730 PF01467 Cytidylyltransferase-like UP12_16735 PF03808 Glycosyl transferase WecB/TagA/CpsF family UP12_16740 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_16745 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase UP12_16745 PF08239 Bacterial SH3 domain UP12_16745 PF05036 Sporulation related domain UP12_16750 PF01238 Phosphomannose isomerase type I UP12_16755 PF00528 Binding-protein-dependent transport system inner membrane component UP12_16760 PF00528 Binding-protein-dependent transport system inner membrane component UP12_16765 PF01547 Bacterial extracellular solute-binding protein UP12_16770 PF00072 Response regulator receiver domain UP12_16770 PF00196 Bacterial regulatory proteins, luxR family UP12_16775 PF00672 HAMP domain UP12_16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_16775 PF06580 Histidine kinase UP12_16775 PF02743 Cache domain UP12_16785 PF00583 Acetyltransferase (GNAT) family UP12_16790 PF01081 KDPG and KHG aldolase UP12_16795 PF00294 pfkB family carbohydrate kinase UP12_16800 PF00356 Bacterial regulatory proteins, lacI family UP12_16805 PF04962 KduI/IolB family UP12_16815 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_16820 PF03845 Spore germination protein UP12_16825 PF05504 Spore germination B3/ GerAC like, C-terminal UP12_16830 PF00535 Glycosyl transferase family 2 UP12_16835 PF00083 Sugar (and other) transporter UP12_16840 PF03816 Cell envelope-related transcriptional attenuator domain UP12_16850 PF00877 NlpC/P60 family UP12_16855 PF09587 Bacterial capsule synthesis protein PGA_cap UP12_16860 PF14102 Capsule biosynthesis CapC UP12_16865 PF08245 Mur ligase middle domain UP12_16870 PF03323 Bacillus/Clostridium GerA spore germination protein UP12_16880 PF05504 Spore germination B3/ GerAC like, C-terminal UP12_16885 PF00356 Bacterial regulatory proteins, lacI family UP12_16890 PF00294 pfkB family carbohydrate kinase UP12_16895 PF05025 RbsD / FucU transport protein family UP12_16900 PF00005 ABC transporter UP12_16905 PF02653 Branched-chain amino acid transport system / permease component UP12_16910 PF13407 Periplasmic binding protein domain UP12_16915 PF01613 Flavin reductase like domain UP12_16920 PF03466 LysR substrate binding domain UP12_16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_16925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UP12_16925 PF00205 Thiamine pyrophosphate enzyme, central domain UP12_16925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain UP12_16930 PF03306 Alpha-acetolactate decarboxylase UP12_16935 PF13404 AsnC-type helix-turn-helix domain UP12_16935 PF01037 Lrp/AsnC ligand binding domain UP12_16940 PF02417 Chromate transporter UP12_16945 PF02417 Chromate transporter UP12_16950 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UP12_16950 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UP12_16950 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain UP12_16955 PF04434 SWIM zinc finger UP12_16960 PF00271 Helicase conserved C-terminal domain UP12_16960 PF12419 SNF2 Helicase protein UP12_16960 PF00176 SNF2 family N-terminal domain UP12_16965 PF13426 PAS domain UP12_16965 PF01740 STAS domain UP12_16980 PF14183 YwpF-like protein UP12_16985 PF01741 Large-conductance mechanosensitive channel, MscL UP12_16990 PF07977 FabA-like domain UP12_16995 PF18801 response regulator aspartate phosphatase H, N terminal UP12_17000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_17000 PF00460 Flagella basal body rod protein UP12_17005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal UP12_17005 PF00460 Flagella basal body rod protein UP12_17015 PF12116 Stage III sporulation protein D UP12_17020 PF01047 MarR family UP12_17025 PF07690 Major Facilitator Superfamily UP12_17030 PF01569 PAP2 superfamily UP12_17035 PF07690 Major Facilitator Superfamily UP12_17040 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_17045 PF00528 Binding-protein-dependent transport system inner membrane component UP12_17050 PF00005 ABC transporter UP12_17055 PF00909 Ammonium Transporter Family UP12_17060 PF00543 Nitrogen regulatory protein P-II UP12_17065 PF01551 Peptidase family M23 UP12_17070 PF00583 Acetyltransferase (GNAT) family UP12_17085 PF00005 ABC transporter UP12_17105 PF00471 Ribosomal protein L33 UP12_17110 PF07683 Cobalamin synthesis protein cobW C-terminal domain UP12_17110 PF02492 CobW/HypB/UreG, nucleotide-binding domain UP12_17115 PF00253 Ribosomal protein S14p/S29e UP12_17120 PF06463 Molybdenum Cofactor Synthesis C UP12_17120 PF04055 Radical SAM superfamily UP12_17125 PF02634 FdhD/NarQ family UP12_17130 PF07690 Major Facilitator Superfamily UP12_17135 PF00384 Molybdopterin oxidoreductase UP12_17140 PF00092 von Willebrand factor type A domain UP12_17145 PF00092 von Willebrand factor type A domain UP12_17150 PF08486 Stage II sporulation protein UP12_17155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UP12_17160 PF08680 TATA-box binding UP12_17165 PF06612 Protein of unknown function (DUF1146) UP12_17175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain UP12_17175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain UP12_17180 PF02874 ATP synthase alpha/beta family, beta-barrel domain UP12_17180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_17185 PF00231 ATP synthase UP12_17190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_17190 PF02874 ATP synthase alpha/beta family, beta-barrel domain UP12_17190 PF00306 ATP synthase alpha/beta chain, C terminal domain UP12_17195 PF00213 ATP synthase delta (OSCP) subunit UP12_17200 PF00430 ATP synthase B/B' CF(0) UP12_17205 PF00137 ATP synthase subunit C UP12_17210 PF00119 ATP synthase A chain UP12_17215 PF03899 ATP synthase I chain UP12_17225 PF00464 Serine hydroxymethyltransferase UP12_17230 PF04260 Protein of unknown function (DUF436) UP12_17235 PF02502 Ribose/Galactose Isomerase UP12_17240 PF01451 Low molecular weight phosphotyrosine protein phosphatase UP12_17245 PF02659 Putative manganese efflux pump UP12_17250 PF01300 Telomere recombination UP12_17250 PF03481 Putative GTP-binding controlling metal-binding UP12_17260 PF09551 Stage II sporulation protein R (spore_II_R) UP12_17270 PF05175 Methyltransferase small domain UP12_17270 PF17827 PrmC N-terminal domain UP12_17275 PF00472 RF-1 domain UP12_17275 PF03462 PCRF domain UP12_17280 PF13411 MerR HTH family regulatory protein UP12_17285 PF03547 Membrane transport protein UP12_17290 PF00390 Malic enzyme, N-terminal domain UP12_17290 PF03949 Malic enzyme, NAD binding domain UP12_17295 PF00265 Thymidine kinase UP12_17300 PF01197 Ribosomal protein L31 UP12_17305 PF07498 Rho termination factor, N-terminal domain UP12_17305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain UP12_17305 PF07497 Rho termination factor, RNA-binding domain UP12_17310 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded UP12_17315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) UP12_17320 PF00923 Transaldolase/Fructose-6-phosphate aldolase UP12_17325 PF01116 Fructose-bisphosphate aldolase class-II UP12_17330 PF00072 Response regulator receiver domain UP12_17335 PF10740 Domain of unknown function (DUF2529) UP12_17340 PF00117 Glutamine amidotransferase class-I UP12_17340 PF06418 CTP synthase N-terminus UP12_17345 PF05066 HB1, ASXL, restriction endonuclease HTH domain UP12_17355 PF00005 ABC transporter UP12_17380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_17380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_17380 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_17385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain UP12_17385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain UP12_17385 PF02770 Acyl-CoA dehydrogenase, middle domain UP12_17390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UP12_17390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain UP12_17395 PF02803 Thiolase, C-terminal domain UP12_17395 PF00108 Thiolase, N-terminal domain UP12_17400 PF02754 Cysteine-rich domain UP12_17400 PF13183 4Fe-4S dicluster domain UP12_17405 PF13091 PLD-like domain UP12_17410 PF03851 UV-endonuclease UvdE UP12_17420 PF17676 LD-carboxypeptidase C-terminal domain UP12_17420 PF02016 LD-carboxypeptidase N-terminal domain UP12_17425 PF00005 ABC transporter UP12_17425 PF00664 ABC transporter transmembrane region UP12_17430 PF13396 Phospholipase_D-nuclease N-terminal UP12_17430 PF13091 PLD-like domain UP12_17435 PF02016 LD-carboxypeptidase N-terminal domain UP12_17435 PF17676 LD-carboxypeptidase C-terminal domain UP12_17440 PF00750 tRNA synthetases class I (R) UP12_17440 PF05746 DALR anticodon binding domain UP12_17440 PF03485 Arginyl tRNA synthetase N terminal domain UP12_17445 PF09148 Domain of unknown function (DUF1934) UP12_17455 PF00491 Arginase family UP12_17460 PF17284 Spermidine synthase tetramerisation domain UP12_17465 PF00905 Penicillin binding protein transpeptidase domain UP12_17465 PF00912 Transglycosylase UP12_17470 PF08741 YwhD family UP12_17475 PF02163 Peptidase family M50 UP12_17480 PF01361 Tautomerase enzyme UP12_17495 PF01966 HD domain UP12_17500 PF07293 Protein of unknown function (DUF1450) UP12_17515 PF00535 Glycosyl transferase family 2 UP12_17515 PF07238 PilZ domain UP12_17525 PF03099 Biotin/lipoate A/B protein ligase family UP12_17540 PF14449 Pre-toxin TG UP12_17540 PF04740 LXG domain of WXG superfamily UP12_17570 PF03737 Aldolase/RraA UP12_17580 PF01515 Phosphate acetyl/butaryl transferase UP12_17590 PF07690 Major Facilitator Superfamily UP12_17595 PF01037 Lrp/AsnC ligand binding domain UP12_17600 PF07690 Major Facilitator Superfamily UP12_17610 PF07883 Cupin domain UP12_17625 PF00155 Aminotransferase class I and II UP12_17635 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase UP12_17640 PF04321 RmlD substrate binding domain UP12_17645 PF16363 GDP-mannose 4,6 dehydratase UP12_17650 PF00483 Nucleotidyl transferase UP12_17655 PF04101 Glycosyltransferase family 28 C-terminal domain UP12_17660 PF02348 Cytidylyltransferase UP12_17665 PF03102 NeuB family UP12_17665 PF08666 SAF domain UP12_17670 PF00583 Acetyltransferase (GNAT) family UP12_17675 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family UP12_17680 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase UP12_17685 PF00535 Glycosyl transferase family 2 UP12_17695 PF09671 Spore coat protein (Spore_GerQ) UP12_17705 PF04241 Protein of unknown function (DUF423) UP12_17710 PF00860 Permease family UP12_17715 PF17261 Family of unknown function (DUF5327) UP12_17720 PF00171 Aldehyde dehydrogenase family UP12_17725 PF03167 Uracil DNA glycosylase superfamily UP12_17730 PF00535 Glycosyl transferase family 2 UP12_17740 PF08543 Phosphomethylpyrimidine kinase UP12_17750 PF08244 Glycosyl hydrolases family 32 C terminal UP12_17750 PF00251 Glycosyl hydrolases family 32 N-terminal domain UP12_17755 PF00367 phosphotransferase system, EIIB UP12_17755 PF02378 Phosphotransferase system, EIIC UP12_17760 PF00874 PRD domain UP12_17760 PF03123 CAT RNA binding domain UP12_17770 PF13860 FlgD Ig-like domain UP12_17770 PF02225 PA domain UP12_17770 PF00082 Subtilase family UP12_17770 PF05922 Peptidase inhibitor I9 UP12_17780 PF00296 Luciferase-like monooxygenase UP12_17785 PF00881 Nitroreductase family UP12_17790 PF01098 Cell cycle protein UP12_17795 PF17368 Spore morphogenesis and germination YwcE UP12_17800 PF03626 Prokaryotic Cytochrome C oxidase subunit IV UP12_17805 PF00510 Cytochrome c oxidase subunit III UP12_17810 PF00115 Cytochrome C and Quinol oxidase polypeptide I UP12_17815 PF00116 Cytochrome C oxidase subunit II, periplasmic domain UP12_17815 PF02790 Cytochrome C oxidase subunit II, transmembrane domain UP12_17825 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain UP12_17825 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain UP12_17830 PF16363 GDP-mannose 4,6 dehydratase UP12_17835 PF10509 Galactokinase galactose-binding signature UP12_17835 PF08544 GHMP kinases C terminal UP12_17835 PF00288 GHMP kinases N terminal domain UP12_17850 PF04138 GtrA-like protein UP12_17870 PF04341 Protein of unknown function, DUF485 UP12_17875 PF00474 Sodium:solute symporter family UP12_17890 PF02581 Thiamine monophosphate synthase UP12_17895 PF02110 Hydroxyethylthiazole kinase family UP12_17900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_17900 PF03466 LysR substrate binding domain UP12_17905 PF03788 LrgA family UP12_17910 PF04172 LrgB-like family UP12_17915 PF17785 PUA-like domain UP12_17915 PF10672 S-adenosylmethionine-dependent methyltransferase UP12_17920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_17925 PF00005 ABC transporter UP12_17930 PF00528 Binding-protein-dependent transport system inner membrane component UP12_17935 PF00497 Bacterial extracellular solute-binding proteins, family 3 UP12_17940 PF18801 response regulator aspartate phosphatase H, N terminal UP12_17945 PF04607 Region found in RelA / SpoT proteins UP12_17950 PF02653 Branched-chain amino acid transport system / permease component UP12_17955 PF00005 ABC transporter UP12_17960 PF13407 Periplasmic binding protein domain UP12_17965 PF13229 Right handed beta helix region UP12_17970 PF01063 Amino-transferase class IV UP12_17985 PF02056 Family 4 glycosyl hydrolase UP12_17985 PF11975 Family 4 glycosyl hydrolase C-terminal domain UP12_17990 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit UP12_17995 PF02378 Phosphotransferase system, EIIC UP12_18000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_18005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_18005 PF00874 PRD domain UP12_18005 PF08279 HTH domain UP12_18005 PF05043 Mga helix-turn-helix domain UP12_18020 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain UP12_18020 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_18035 PF08281 Sigma-70, region 4 UP12_18035 PF04542 Sigma-70 region 2 UP12_18040 PF00544 Pectate lyase UP12_18045 PF00664 ABC transporter transmembrane region UP12_18045 PF00005 ABC transporter UP12_18050 PF00664 ABC transporter transmembrane region UP12_18050 PF00005 ABC transporter UP12_18055 PF02322 Cytochrome bd terminal oxidase subunit II UP12_18060 PF01654 Cytochrome bd terminal oxidase subunit I UP12_18065 PF00005 ABC transporter UP12_18070 PF01032 FecCD transport family UP12_18080 PF04203 Sortase domain UP12_18085 PF00005 ABC transporter UP12_18090 PF01032 FecCD transport family UP12_18095 PF01497 Periplasmic binding protein UP12_18105 PF05031 Iron Transport-associated domain UP12_18110 PF05031 Iron Transport-associated domain UP12_18115 PF01638 HxlR-like helix-turn-helix UP12_18120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_18125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase UP12_18125 PF00925 GTP cyclohydrolase II UP12_18130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region UP12_18130 PF01872 RibD C-terminal domain UP12_18135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_18140 PF01522 Polysaccharide deacetylase UP12_18145 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit UP12_18150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit UP12_18155 PF00232 Glycosyl hydrolase family 1 UP12_18160 PF03786 D-mannonate dehydratase (UxuA) UP12_18165 PF02378 Phosphotransferase system, EIIC UP12_18170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 UP12_18170 PF00874 PRD domain UP12_18170 PF08279 HTH domain UP12_18170 PF05043 Mga helix-turn-helix domain UP12_18195 PF03553 Na+/H+ antiporter family UP12_18200 PF00206 Lyase UP12_18200 PF10415 Fumarase C C-terminus UP12_18205 PF00710 Asparaginase, N-terminal UP12_18205 PF17763 Glutaminase/Asparaginase C-terminal domain UP12_18210 PF01381 Helix-turn-helix UP12_18220 PF17353 Family of unknown function (DUF5381) UP12_18235 PF06013 Proteins of 100 residues with WXG UP12_18240 PF07687 Peptidase dimerisation domain UP12_18240 PF01546 Peptidase family M20/M25/M40 UP12_18255 PF01380 SIS domain UP12_18255 PF01418 Helix-turn-helix domain, rpiR family UP12_18260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase UP12_18260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase UP12_18270 PF02447 GntP family permease UP12_18275 PF01717 Cobalamin-independent synthase, Catalytic domain UP12_18280 PF00232 Glycosyl hydrolase family 1 UP12_18285 PF02378 Phosphotransferase system, EIIC UP12_18285 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_18285 PF00367 phosphotransferase system, EIIB UP12_18290 PF00874 PRD domain UP12_18290 PF03123 CAT RNA binding domain UP12_18295 PF09234 Domain of unknown function (DUF1963) UP12_18305 PF02361 Cobalt transport protein UP12_18310 PF00005 ABC transporter UP12_18315 PF09819 ABC-type cobalt transport system, permease component UP12_18320 PF03070 TENA/THI-4/PQQC family UP12_18345 PF05547 Immune inhibitor A peptidase M6 UP12_18345 PF00801 PKD domain UP12_18350 PF03992 Antibiotic biosynthesis monooxygenase UP12_18355 PF00881 Nitroreductase family UP12_18360 PF01047 MarR family UP12_18365 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain UP12_18365 PF02885 Glycosyl transferase family, helical bundle domain UP12_18365 PF00591 Glycosyl transferase family, a/b domain UP12_18370 PF07662 Na+ dependent nucleoside transporter C-terminus UP12_18370 PF01773 Na+ dependent nucleoside transporter N-terminus UP12_18375 PF01791 DeoC/LacD family aldolase UP12_18380 PF04198 Putative sugar-binding domain UP12_18400 PF00082 Subtilase family UP12_18405 PF01757 Acyltransferase family UP12_18410 PF07690 Major Facilitator Superfamily UP12_18425 PF00072 Response regulator receiver domain UP12_18425 PF00196 Bacterial regulatory proteins, luxR family UP12_18435 PF13411 MerR HTH family regulatory protein UP12_18440 PF01408 Oxidoreductase family, NAD-binding Rossmann fold UP12_18445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain UP12_18450 PF00324 Amino acid permease UP12_18455 PF08713 DNA alkylation repair enzyme UP12_18460 PF02447 GntP family permease UP12_18465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain UP12_18465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain UP12_18470 PF01418 Helix-turn-helix domain, rpiR family UP12_18470 PF01380 SIS domain UP12_18475 PF01156 Inosine-uridine preferring nucleoside hydrolase UP12_18505 PF03466 LysR substrate binding domain UP12_18505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_18510 PF00356 Bacterial regulatory proteins, lacI family UP12_18515 PF13416 Bacterial extracellular solute-binding protein UP12_18520 PF00528 Binding-protein-dependent transport system inner membrane component UP12_18525 PF00528 Binding-protein-dependent transport system inner membrane component UP12_18530 PF07745 Glycosyl hydrolase family 53 UP12_18535 PF02449 Beta-galactosidase UP12_18535 PF08533 Beta-galactosidase C-terminal domain UP12_18535 PF08532 Beta-galactosidase trimerisation domain UP12_18540 PF03600 Citrate transporter UP12_18550 PF12679 ABC-2 family transporter protein UP12_18555 PF00005 ABC transporter UP12_18565 PF03831 PhnA domain UP12_18565 PF08274 PhnA Zinc-Ribbon UP12_18570 PF02595 Glycerate kinase family UP12_18575 PF02447 GntP family permease UP12_18580 PF17853 GGDEF-like domain UP12_18580 PF13556 PucR C-terminal helix-turn-helix domain UP12_18580 PF05651 Putative sugar diacid recognition UP12_18585 PF17922 Tetracyclin repressor-like, C-terminal domain UP12_18585 PF00440 Bacterial regulatory proteins, tetR family UP12_18590 PF07690 Major Facilitator Superfamily UP12_18600 PF00005 ABC transporter UP12_18610 PF18801 response regulator aspartate phosphatase H, N terminal UP12_18615 PF03123 CAT RNA binding domain UP12_18615 PF00874 PRD domain UP12_18620 PF00232 Glycosyl hydrolase family 1 UP12_18625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 UP12_18625 PF00367 phosphotransferase system, EIIB UP12_18625 PF02378 Phosphotransferase system, EIIC UP12_18650 PF00293 NUDIX domain UP12_18665 PF00324 Amino acid permease UP12_18680 PF07690 Major Facilitator Superfamily UP12_18685 PF08501 Shikimate dehydrogenase substrate binding domain UP12_18685 PF18317 Shikimate 5'-dehydrogenase C-terminal domain UP12_18690 PF07690 Major Facilitator Superfamily UP12_18715 PF00232 Glycosyl hydrolase family 1 UP12_18720 PF00392 Bacterial regulatory proteins, gntR family UP12_18720 PF07702 UTRA domain UP12_18730 PF02567 Phenazine biosynthesis-like protein UP12_18735 PF03466 LysR substrate binding domain UP12_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family UP12_18755 PF00672 HAMP domain UP12_18755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_18755 PF00512 His Kinase A (phospho-acceptor) domain UP12_18760 PF00072 Response regulator receiver domain UP12_18760 PF00486 Transcriptional regulatory protein, C terminal UP12_18765 PF03176 MMPL family UP12_18765 PF12823 Domain of unknown function (DUF3817) UP12_18775 PF07690 Major Facilitator Superfamily UP12_18830 PF02590 Predicted SPOUT methyltransferase UP12_18835 PF02361 Cobalt transport protein UP12_18840 PF12558 ATP-binding cassette cobalt transporter UP12_18840 PF00005 ABC transporter UP12_18845 PF07155 ECF-type riboflavin transporter, S component UP12_18860 PF00005 ABC transporter UP12_18865 PF00583 Acetyltransferase (GNAT) family UP12_18870 PF13180 PDZ domain UP12_18875 PF00753 Metallo-beta-lactamase superfamily UP12_18880 PF09648 YycH protein UP12_18885 PF07435 YycH protein UP12_18890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UP12_18890 PF00512 His Kinase A (phospho-acceptor) domain UP12_18890 PF00672 HAMP domain UP12_18890 PF13426 PAS domain UP12_18895 PF00486 Transcriptional regulatory protein, C terminal UP12_18895 PF00072 Response regulator receiver domain UP12_18920 PF00578 AhpC/TSA family UP12_18930 PF04235 Protein of unknown function (DUF418) UP12_18935 PF00709 Adenylosuccinate synthetase UP12_18940 PF00440 Bacterial regulatory proteins, tetR family UP12_18945 PF00067 Cytochrome P450 UP12_18950 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_18955 PF03796 DnaB-like helicase C terminal domain UP12_18955 PF00772 DnaB-like helicase N terminal domain UP12_18960 PF16226 Domain of unknown function (DUF4885) UP12_18970 PF00756 Putative esterase UP12_18975 PF00106 short chain dehydrogenase UP12_18980 PF00425 chorismate binding enzyme UP12_18985 PF13193 AMP-binding enzyme C-terminal domain UP12_18985 PF00501 AMP-binding enzyme UP12_18990 PF00857 Isochorismatase family UP12_18990 PF00550 Phosphopantetheine attachment site UP12_18995 PF13193 AMP-binding enzyme C-terminal domain UP12_18995 PF00975 Thioesterase domain UP12_18995 PF00501 AMP-binding enzyme UP12_18995 PF00668 Condensation domain UP12_18995 PF00550 Phosphopantetheine attachment site UP12_19000 PF03621 MbtH-like protein UP12_19005 PF01497 Periplasmic binding protein UP12_19005 PF12833 Helix-turn-helix domain UP12_19010 PF01497 Periplasmic binding protein UP12_19015 PF00756 Putative esterase UP12_19020 PF07690 Major Facilitator Superfamily UP12_19025 PF01281 Ribosomal protein L9, N-terminal domain UP12_19025 PF03948 Ribosomal protein L9, C-terminal domain UP12_19030 PF02272 DHHA1 domain UP12_19030 PF01368 DHH family UP12_19035 PF09991 Predicted membrane protein (DUF2232) UP12_19040 PF01368 DHH family UP12_19040 PF02833 DHHA2 domain UP12_19045 PF11738 Protein of unknown function (DUF3298) UP12_19045 PF13739 Deacetylase PdaC UP12_19050 PF08281 Sigma-70, region 4 UP12_19050 PF04542 Sigma-70 region 2 UP12_19060 PF06628 Catalase-related immune-responsive UP12_19060 PF00199 Catalase UP12_19065 PF03358 NADPH-dependent FMN reductase UP12_19070 PF01738 Dienelactone hydrolase family UP12_19075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily UP12_19080 PF00528 Binding-protein-dependent transport system inner membrane component UP12_19085 PF00571 CBS domain UP12_19085 PF00005 ABC transporter UP12_19090 PF01084 Ribosomal protein S18 UP12_19095 PF00436 Single-strand binding protein family UP12_19100 PF01250 Ribosomal protein S6 UP12_19105 PF06071 Protein of unknown function (DUF933) UP12_19105 PF01926 50S ribosome-binding GTPase UP12_19110 PF06107 Bacterial protein of unknown function (DUF951) UP12_19130 PF06866 Protein of unknown function (DUF1256) UP12_19135 PF17762 HTH domain found in ParB protein UP12_19135 PF02195 ParB-like nuclease domain UP12_19140 PF13614 AAA domain UP12_19150 PF02195 ParB-like nuclease domain UP12_19150 PF17762 HTH domain found in ParB protein UP12_19155 PF02527 rRNA small subunit methyltransferase G UP12_19160 PF13932 GidA associated domain UP12_19160 PF01134 Glucose inhibited division protein A UP12_19165 PF01926 50S ribosome-binding GTPase UP12_19165 PF12631 MnmE helical domain UP12_19165 PF10396 GTP-binding protein TrmE N-terminus UP12_19170 PF14804 Jag N-terminus UP12_19170 PF01424 R3H domain UP12_19175 PF02096 60Kd inner membrane protein UP12_19180 PF00825 Ribonuclease P UP12_19300 PF00877 NlpC/P60 family UP12_19330 PF13154 Protein of unknown function (DUF3991) UP12_19335 PF01131 DNA topoisomerase UP12_19335 PF01751 Toprim domain UP12_19365 PF02334 Replication terminator protein UP12_19385 PF11799 impB/mucB/samB family C-terminal domain UP12_19385 PF00817 impB/mucB/samB family UP12_19385 PF11798 IMS family HHH motif UP12_19410 PF01381 Helix-turn-helix UP12_19455 PF00436 Single-strand binding protein family UP12_19520 PF00145 C-5 cytosine-specific DNA methylase UP12_19585 PF18801 response regulator aspartate phosphatase H, N terminal UP12_19640 PF01443 Viral (Superfamily 1) RNA helicase UP12_19640 PF03389 MobA/MobL family UP12_19640 PF17841 BID domain of Bartonella effector protein (Bep) UP12_19660 PF17841 BID domain of Bartonella effector protein (Bep) UP12_19660 PF02661 Fic/DOC family