UP12_00005 SM00382 ATPases associated with a variety of cellular activities UP12_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain UP12_00010 SM00480 DNA polymerase III beta subunit UP12_00030 SM00387 Histidine kinase-like ATPases UP12_00030 SM00433 TopoisomeraseII UP12_00035 SM00434 DNA Topoisomerase IV UP12_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_00070 SM01240 UP12_00070 UP12_00075 SM00936 Penicillin-binding protein 5, C-terminal domain UP12_00080 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_00100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_00120 SM00257 Lysin motif UP12_00120 SM00636 UP12_00120 UP12_00135 SM00382 ATPases associated with a variety of cellular activities UP12_00145 SM00493 UP12_00145 UP12_00240 SM00465 GIY-YIG type nucleases (URI domain) UP12_00250 SM00966 SpoVT / AbrB like domain UP12_00265 SM01208 UP12_00265 UP12_00270 SM00493 UP12_00270 UP12_00275 SM00650 Ribosomal RNA adenine dimethylases UP12_00320 SM01400 UP12_00320 UP12_00340 SM00487 DEAD-like helicases superfamily UP12_00340 SM00490 helicase superfamily c-terminal domain UP12_00340 SM00982 UP12_00340 UP12_00340 SM01058 CarD-like/TRCF domain UP12_00345 SM00966 SpoVT / AbrB like domain UP12_00360 SM00363 S4 RNA-binding domain UP12_00380 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_00395 SM00331 Sigma factor PP2C-like phosphatases UP12_00395 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP12_00405 SM00220 Serine/Threonine protein kinases, catalytic domain UP12_00410 SM00977 TilS substrate C-terminal domain UP12_00420 SM00382 ATPases associated with a variety of cellular activities UP12_00465 SM00905 Dihydroneopterin aldolase UP12_00475 SM00530 Helix-turn-helix XRE-family like proteins UP12_00580 SM00382 ATPases associated with a variety of cellular activities UP12_00580 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_00585 SM00382 ATPases associated with a variety of cellular activities UP12_00595 SM00670 Large family of predicted nucleotide-binding domains UP12_00620 SM00840 UP12_00620 UP12_00625 SM00535 Ribonuclease III family UP12_00630 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP12_00650 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. UP12_00650 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP12_00655 SM00649 Ribosomal protein L11/L12 UP12_00685 SM00663 RNA polymerase I subunit A N-terminus UP12_00705 SM00838 Elongation factor G C-terminus UP12_00705 SM00889 Elongation factor G, domain IV UP12_00720 SM01403 UP12_00720 UP12_00740 SM01382 UP12_00740 UP12_00740 SM01383 UP12_00740 UP12_00755 SM00322 K homology RNA-binding domain UP12_00775 SM01374 UP12_00775 UP12_00780 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. UP12_00845 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_00865 SM00662 RNA polymerases D UP12_00875 SM00382 ATPases associated with a variety of cellular activities UP12_00880 SM00382 ATPases associated with a variety of cellular activities UP12_00935 SM00646 UP12_00935 UP12_00950 SM01251 UP12_00950 UP12_01130 SM00382 ATPases associated with a variety of cellular activities UP12_01145 SM00382 ATPases associated with a variety of cellular activities UP12_01175 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_01180 SM00382 ATPases associated with a variety of cellular activities UP12_01190 SM00530 Helix-turn-helix XRE-family like proteins UP12_01260 SM00829 Enoylreductase UP12_01265 SM00825 Beta-ketoacyl synthase UP12_01270 SM00530 Helix-turn-helix XRE-family like proteins UP12_01290 SM00450 Rhodanese Homology Domain UP12_01295 SM00450 Rhodanese Homology Domain UP12_01300 SM00450 Rhodanese Homology Domain UP12_01300 SM00849 Metallo-beta-lactamase superfamily UP12_01315 SM00946 Prolyl-tRNA synthetase, C-terminal UP12_01330 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_01360 SM00450 Rhodanese Homology Domain UP12_01375 SM01061 CAT RNA binding domain UP12_01415 SM00872 Alpha mannosidase, middle domain UP12_01520 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_01555 SM00387 Histidine kinase-like ATPases UP12_01560 SM00448 cheY-homologous receiver domain UP12_01580 SM00387 Histidine kinase-like ATPases UP12_01585 SM00448 cheY-homologous receiver domain UP12_01585 SM00850 LytTr DNA-binding domain UP12_01590 SM00382 ATPases associated with a variety of cellular activities UP12_01680 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_01680 SM00382 ATPases associated with a variety of cellular activities UP12_01725 SM00354 helix_turn _helix lactose operon repressor UP12_01845 SM00346 helix_turn_helix isocitrate lyase regulation UP12_01855 SM01130 UP12_01855 UP12_01860 SM00354 helix_turn _helix lactose operon repressor UP12_01925 SM00062 Bacterial periplasmic substrate-binding proteins UP12_01940 SM00344 helix_turn_helix ASNC type UP12_01955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_01955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_01985 SM00382 ATPases associated with a variety of cellular activities UP12_02000 SM00823 Phosphopantetheine attachment site UP12_02005 SM00823 Phosphopantetheine attachment site UP12_02010 SM00823 Phosphopantetheine attachment site UP12_02015 SM00822 UP12_02015 UP12_02020 SM00822 UP12_02020 UP12_02020 SM00824 Thioesterase UP12_02025 SM00824 Thioesterase UP12_02035 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_02065 SM00966 SpoVT / AbrB like domain UP12_02070 SM00382 ATPases associated with a variety of cellular activities UP12_02080 SM00062 Bacterial periplasmic substrate-binding proteins UP12_02095 SM00710 Parallel beta-helix repeats UP12_02110 SM00062 Bacterial periplasmic substrate-binding proteins UP12_02110 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_02120 SM00382 ATPases associated with a variety of cellular activities UP12_02135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_02160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_02165 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_02215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_02215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_02215 SM01049 UP12_02215 UP12_02240 SM00894 Excalibur calcium-binding domain UP12_02265 SM00796 Allophanate hydrolase subunit 1 UP12_02270 SM00797 Allophanate hydrolase subunit 2 UP12_02275 SM00346 helix_turn_helix isocitrate lyase regulation UP12_02335 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_02335 SM00895 UP12_02335 UP12_02340 SM00342 helix_turn_helix, arabinose operon control protein UP12_02350 SM01329 UP12_02350 UP12_02355 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain UP12_02355 SM00437 Bacterial DNA topoisomerase I DNA-binding domain UP12_02355 SM00493 UP12_02355 UP12_02365 SM00267 diguanylate cyclase UP12_02440 SM00091 PAS domain UP12_02440 SM00387 Histidine kinase-like ATPases UP12_02445 SM00448 cheY-homologous receiver domain UP12_02465 SM00382 ATPases associated with a variety of cellular activities UP12_02505 SM00487 DEAD-like helicases superfamily UP12_02505 SM00490 helicase superfamily c-terminal domain UP12_02535 SM01005 Alanine racemase, C-terminal domain UP12_02565 SM00331 Sigma factor PP2C-like phosphatases UP12_02575 SM00387 Histidine kinase-like ATPases UP12_02585 SM00331 Sigma factor PP2C-like phosphatases UP12_02585 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP12_02590 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_02590 SM00732 Likely ribonuclease with RNase H fold. UP12_02595 SM00731 SprT homologues. UP12_02605 SM00861 Transketolase, pyrimidine binding domain UP12_02620 SM00382 ATPases associated with a variety of cellular activities UP12_02670 SM00530 Helix-turn-helix XRE-family like proteins UP12_02810 SM00028 Tetratricopeptide repeats UP12_02820 SM00829 Enoylreductase UP12_02850 SM00357 Cold shock protein domain UP12_02855 SM01058 CarD-like/TRCF domain UP12_02860 SM00829 Enoylreductase UP12_02865 SM00422 helix_turn_helix, mercury resistance UP12_02910 SM00422 helix_turn_helix, mercury resistance UP12_02925 SM00870 UP12_02925 UP12_02935 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_02960 SM00387 Histidine kinase-like ATPases UP12_02965 SM00421 helix_turn_helix, Lux Regulon UP12_02965 SM00448 cheY-homologous receiver domain UP12_03005 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_03025 SM00530 Helix-turn-helix XRE-family like proteins UP12_03145 SM00382 ATPases associated with a variety of cellular activities UP12_03155 SM00881 CoA binding domain UP12_03185 SM00883 Chaperonin 10 Kd subunit UP12_03195 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_03265 SM00460 Transglutaminase/protease-like homologues UP12_03290 SM00850 LytTr DNA-binding domain UP12_03335 SM01001 AIR carboxylase UP12_03345 SM00998 Adenylosuccinate lyase C-terminus UP12_03360 SM01211 UP12_03360 UP12_03385 SM00798 AICARFT/IMPCHase bienzyme UP12_03385 SM00851 MGS-like domain UP12_03390 SM01209 UP12_03390 UP12_03390 SM01210 UP12_03390 UP12_03415 SM00882 Coenzyme A transferase UP12_03420 SM00882 Coenzyme A transferase UP12_03475 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_03475 SM00292 breast cancer carboxy-terminal domain UP12_03475 SM00532 Ligase N family UP12_03530 SM00822 UP12_03530 UP12_03530 SM00823 Phosphopantetheine attachment site UP12_03530 SM00825 Beta-ketoacyl synthase UP12_03530 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_03530 SM01294 UP12_03530 UP12_03535 SM00823 Phosphopantetheine attachment site UP12_03540 SM00822 UP12_03540 UP12_03540 SM00823 Phosphopantetheine attachment site UP12_03540 SM00825 Beta-ketoacyl synthase UP12_03540 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_03545 SM00822 UP12_03545 UP12_03545 SM00823 Phosphopantetheine attachment site UP12_03545 SM00825 Beta-ketoacyl synthase UP12_03545 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_03550 SM00823 Phosphopantetheine attachment site UP12_03550 SM00825 Beta-ketoacyl synthase UP12_03550 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_03560 SM00098 Alkaline phosphatase homologues UP12_03585 SM00845 GatB domain UP12_03605 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP12_03785 SM00028 Tetratricopeptide repeats UP12_03790 SM00382 ATPases associated with a variety of cellular activities UP12_03795 SM00422 helix_turn_helix, mercury resistance UP12_03805 SM00382 ATPases associated with a variety of cellular activities UP12_03810 SM00487 DEAD-like helicases superfamily UP12_03810 SM00490 helicase superfamily c-terminal domain UP12_03815 SM00829 Enoylreductase UP12_03845 SM00320 WD40 repeats UP12_03860 SM00387 Histidine kinase-like ATPases UP12_03865 SM00448 cheY-homologous receiver domain UP12_03880 SM00631 UP12_03880 UP12_03945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_03945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_03960 SM00642 Alpha-amylase domain UP12_03965 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_03965 SM00866 UP12_03965 UP12_03995 SM00226 Low molecular weight phosphatase family UP12_04075 SM00478 endonuclease III UP12_04105 SM00422 helix_turn_helix, mercury resistance UP12_04105 SM00871 Bacterial transcription activator, effector binding domain UP12_04125 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP12_04200 SM00342 helix_turn_helix, arabinose operon control protein UP12_04210 SM00382 ATPases associated with a variety of cellular activities UP12_04235 SM00829 Enoylreductase UP12_04250 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_04270 SM00530 Helix-turn-helix XRE-family like proteins UP12_04340 SM00835 Cupin UP12_04360 SM00478 endonuclease III UP12_04390 SM00382 ATPases associated with a variety of cellular activities UP12_04395 SM00382 ATPases associated with a variety of cellular activities UP12_04400 SM00382 ATPases associated with a variety of cellular activities UP12_04565 SM00855 Phosphoglycerate mutase family UP12_04610 SM00382 ATPases associated with a variety of cellular activities UP12_04645 SM00567 E-Z type HEAT repeats UP12_04665 SM00763 PrkA AAA domain UP12_04695 SM00357 Cold shock protein domain UP12_04700 SM00267 diguanylate cyclase UP12_04730 SM00138 Methyltransferase, chemotaxis proteins UP12_04730 SM00387 Histidine kinase-like ATPases UP12_04730 SM00388 His Kinase A (phosphoacceptor) domain UP12_04735 SM00318 Staphylococcal nuclease homologues UP12_04810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_04815 SM00421 helix_turn_helix, Lux Regulon UP12_04815 SM00448 cheY-homologous receiver domain UP12_04835 SM01060 UP12_04835 UP12_04855 SM00098 Alkaline phosphatase homologues UP12_04860 SM00257 Lysin motif UP12_04880 SM00563 Phosphate acyltransferases UP12_04885 SM01091 Transporter associated domain UP12_04890 SM00422 helix_turn_helix, mercury resistance UP12_04895 SM01091 Transporter associated domain UP12_04945 SM00382 ATPases associated with a variety of cellular activities UP12_04950 SM00382 ATPases associated with a variety of cellular activities UP12_04965 SM00382 ATPases associated with a variety of cellular activities UP12_05005 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_05050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_05085 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_05115 SM00382 ATPases associated with a variety of cellular activities UP12_05185 SM00849 Metallo-beta-lactamase superfamily UP12_05215 SM00855 Phosphoglycerate mutase family UP12_05220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_05235 SM00914 UP12_05235 UP12_05245 SM01119 UP12_05245 UP12_05255 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_05425 SM00342 helix_turn_helix, arabinose operon control protein UP12_05465 SM01006 Siderophore biosynthesis protein domain UP12_05485 SM01018 B12 binding domain UP12_05500 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_05510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_05510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_05565 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP12_05585 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_05590 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_05645 SM00825 Beta-ketoacyl synthase UP12_05655 SM00382 ATPases associated with a variety of cellular activities UP12_05660 SM00382 ATPases associated with a variety of cellular activities UP12_05705 SM00382 ATPases associated with a variety of cellular activities UP12_05710 SM00382 ATPases associated with a variety of cellular activities UP12_05740 SM00155 Phospholipase D. Active site motifs. UP12_05775 SM01118 UP12_05775 UP12_05785 SM00954 Region found in RelA / SpoT proteins UP12_05940 SM00829 Enoylreductase UP12_05945 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_05955 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_05975 SM01130 UP12_05975 UP12_05990 SM01059 Chloramphenicol acetyltransferase UP12_05995 SM00028 Tetratricopeptide repeats UP12_06005 SM00860 SMI1 / KNR4 family UP12_06070 SM00028 Tetratricopeptide repeats UP12_06080 SM00871 Bacterial transcription activator, effector binding domain UP12_06090 SM01005 Alanine racemase, C-terminal domain UP12_06095 SM00829 Enoylreductase UP12_06105 SM00612 UP12_06105 UP12_06135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_06155 SM00257 Lysin motif UP12_06155 SM00644 UP12_06155 UP12_06180 SM01022 UP12_06180 UP12_06210 SM00829 Enoylreductase UP12_06220 SM00861 Transketolase, pyrimidine binding domain UP12_06225 SM01059 Chloramphenicol acetyltransferase UP12_06265 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_06290 SM00382 ATPases associated with a variety of cellular activities UP12_06305 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP12_06315 SM00382 ATPases associated with a variety of cellular activities UP12_06350 SM00342 helix_turn_helix, arabinose operon control protein UP12_06375 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP12_06385 SM00028 Tetratricopeptide repeats UP12_06400 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_06425 SM00448 cheY-homologous receiver domain UP12_06425 SM00862 Transcriptional regulatory protein, C terminal UP12_06430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_06430 SM00387 Histidine kinase-like ATPases UP12_06430 SM00388 His Kinase A (phosphoacceptor) domain UP12_06450 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_06450 SM00924 MgtE intracellular N domain UP12_06470 SM00422 helix_turn_helix, mercury resistance UP12_06480 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_06485 SM00052 Putative diguanylate phosphodiesterase UP12_06485 SM00267 diguanylate cyclase UP12_06545 SM00091 PAS domain UP12_06545 SM00387 Histidine kinase-like ATPases UP12_06545 SM00388 His Kinase A (phosphoacceptor) domain UP12_06580 SM01007 Class II Aldolase and Adducin N-terminal domain UP12_06595 SM00387 Histidine kinase-like ATPases UP12_06595 SM00388 His Kinase A (phosphoacceptor) domain UP12_06600 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_06615 SM00382 ATPases associated with a variety of cellular activities UP12_06615 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_06690 SM00354 helix_turn _helix lactose operon repressor UP12_06695 SM01061 CAT RNA binding domain UP12_06725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_06725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_06750 SM00091 PAS domain UP12_06750 SM00387 Histidine kinase-like ATPases UP12_06750 SM00388 His Kinase A (phosphoacceptor) domain UP12_06775 SM00260 Two component signalling adaptor domain UP12_06775 SM00448 cheY-homologous receiver domain UP12_06800 SM00257 Lysin motif UP12_06815 SM00052 Putative diguanylate phosphodiesterase UP12_06920 SM00852 Probable molybdopterin binding domain UP12_06955 SM00382 ATPases associated with a variety of cellular activities UP12_06965 SM00420 helix_turn_helix, Deoxyribose operon repressor UP12_06965 SM01134 UP12_06965 UP12_06990 SM00382 ATPases associated with a variety of cellular activities UP12_07005 SM00966 SpoVT / AbrB like domain UP12_07010 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_07010 SM00091 PAS domain UP12_07010 SM00387 Histidine kinase-like ATPases UP12_07010 SM00388 His Kinase A (phosphoacceptor) domain UP12_07030 SM00849 Metallo-beta-lactamase superfamily UP12_07065 SM00861 Transketolase, pyrimidine binding domain UP12_07145 SM00838 Elongation factor G C-terminus UP12_07165 SM00670 Large family of predicted nucleotide-binding domains UP12_07190 SM00878 Biotin carboxylase C-terminal domain UP12_07240 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_07295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_07315 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains UP12_07350 SM00740 UP12_07350 UP12_07355 SM00740 UP12_07355 UP12_07410 SM00842 Cell division protein FtsA UP12_07415 SM00864 Tubulin/FtsZ family, GTPase domain UP12_07415 SM00865 Tubulin/FtsZ family, C-terminal domain UP12_07445 SM00858 UP12_07445 UP12_07470 SM00382 ATPases associated with a variety of cellular activities UP12_07500 SM00363 S4 RNA-binding domain UP12_07525 SM00363 S4 RNA-binding domain UP12_07550 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain UP12_07555 SM00851 MGS-like domain UP12_07555 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain UP12_07555 SM01209 UP12_07555 UP12_07570 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_07620 SM00831 Cation transporter/ATPase, N-terminus UP12_07635 SM00072 Guanylate kinase homologues. UP12_07640 SM01409 UP12_07640 UP12_07650 SM00487 DEAD-like helicases superfamily UP12_07650 SM00490 helicase superfamily c-terminal domain UP12_07675 SM00331 Sigma factor PP2C-like phosphatases UP12_07675 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain UP12_07680 SM00220 Serine/Threonine protein kinases, catalytic domain UP12_07680 SM00740 UP12_07680 UP12_07695 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain UP12_07715 SM01120 UP12_07715 UP12_07715 SM01121 UP12_07715 UP12_07730 SM00487 DEAD-like helicases superfamily UP12_07730 SM00490 helicase superfamily c-terminal domain UP12_07745 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. UP12_07750 SM00822 UP12_07750 UP12_07760 SM00358 Double-stranded RNA binding motif UP12_07760 SM00535 Ribonuclease III family UP12_07765 SM00968 SMC proteins Flexible Hinge Domain UP12_07770 SM00382 ATPases associated with a variety of cellular activities UP12_07770 SM00962 SRP54-type protein, GTPase domain UP12_07770 SM00963 SRP54-type protein, helical bundle domain UP12_07780 SM00382 ATPases associated with a variety of cellular activities UP12_07780 SM00962 SRP54-type protein, GTPase domain UP12_07780 SM00963 SRP54-type protein, helical bundle domain UP12_07840 SM00881 CoA binding domain UP12_07850 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain UP12_07850 SM00437 Bacterial DNA topoisomerase I DNA-binding domain UP12_07850 SM00493 UP12_07850 UP12_07870 SM00382 ATPases associated with a variety of cellular activities UP12_07870 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_07910 SM00382 ATPases associated with a variety of cellular activities UP12_07960 SM00448 cheY-homologous receiver domain UP12_07995 SM00962 SRP54-type protein, GTPase domain UP12_08005 SM00448 cheY-homologous receiver domain UP12_08010 SM00073 Histidine Phosphotransfer domain UP12_08010 SM00260 Two component signalling adaptor domain UP12_08010 SM00387 Histidine kinase-like ATPases UP12_08010 SM01231 UP12_08010 UP12_08015 SM00260 Two component signalling adaptor domain UP12_08075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_08085 SM00479 UP12_08085 UP12_08085 SM00481 DNA polymerase alpha chain like domain UP12_08090 SM01067 Cellulose binding domain UP12_08100 SM00633 Glycosyl hydrolase family 10 UP12_08115 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_08115 SM00322 K homology RNA-binding domain UP12_08150 SM00904 Riboflavin kinase UP12_08155 SM01387 UP12_08155 UP12_08160 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_08160 SM00322 K homology RNA-binding domain UP12_08195 SM00859 Semialdehyde dehydrogenase, NAD binding domain UP12_08205 SM01130 UP12_08205 UP12_08210 SM00849 Metallo-beta-lactamase superfamily UP12_08225 SM00382 ATPases associated with a variety of cellular activities UP12_08225 SM00843 UP12_08225 UP12_08230 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_08230 SM00866 UP12_08230 UP12_08255 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_08280 SM00530 Helix-turn-helix XRE-family like proteins UP12_08290 SM00852 Probable molybdopterin binding domain UP12_08295 SM00382 ATPases associated with a variety of cellular activities UP12_08300 SM00322 K homology RNA-binding domain UP12_08300 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_08325 SM00829 Enoylreductase UP12_08340 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_08355 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP12_08355 SM00534 ATPase domain of DNA mismatch repair MUTS family UP12_08360 SM00853 MutL C terminal dimerisation domain UP12_08360 SM01340 UP12_08360 UP12_08380 SM01058 CarD-like/TRCF domain UP12_08390 SM00028 Tetratricopeptide repeats UP12_08475 SM00646 UP12_08475 UP12_08480 SM00382 ATPases associated with a variety of cellular activities UP12_08495 SM00422 helix_turn_helix, mercury resistance UP12_08500 SM01230 UP12_08500 UP12_08540 SM00506 Appr-1"-p processing enzyme UP12_08550 SM00014 Acid phosphatase homologues UP12_08585 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen UP12_08655 SM00020 Trypsin-like serine protease UP12_08685 SM00257 Lysin motif UP12_08690 SM00857 Resolvase, N terminal domain UP12_08700 SM00861 Transketolase, pyrimidine binding domain UP12_08785 SM01207 UP12_08785 UP12_08790 SM00881 CoA binding domain UP12_08800 SM00387 Histidine kinase-like ATPases UP12_08800 SM00433 TopoisomeraseII UP12_08805 SM00434 DNA Topoisomerase IV UP12_08825 SM00226 Low molecular weight phosphatase family UP12_08835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_08915 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_08960 SM00422 helix_turn_helix, mercury resistance UP12_08970 SM00387 Histidine kinase-like ATPases UP12_08970 SM00388 His Kinase A (phosphoacceptor) domain UP12_08975 SM00448 cheY-homologous receiver domain UP12_08975 SM00862 Transcriptional regulatory protein, C terminal UP12_08985 SM00606 Cellulose Binding Domain Type IV UP12_09015 SM00354 helix_turn _helix lactose operon repressor UP12_09050 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_09085 SM00155 Phospholipase D. Active site motifs. UP12_09095 SM00100 Cyclic nucleotide-monophosphate binding domain UP12_09145 SM00878 Biotin carboxylase C-terminal domain UP12_09170 SM00420 helix_turn_helix, Deoxyribose operon repressor UP12_09170 SM01134 UP12_09170 UP12_09305 SM00382 ATPases associated with a variety of cellular activities UP12_09310 SM00382 ATPases associated with a variety of cellular activities UP12_09315 SM00422 helix_turn_helix, mercury resistance UP12_09335 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP12_09350 SM00926 Molybdopterin oxidoreductase Fe4S4 domain UP12_09415 SM00849 Metallo-beta-lactamase superfamily UP12_09420 SM00871 Bacterial transcription activator, effector binding domain UP12_09435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_09475 SM00257 Lysin motif UP12_09480 SM00341 Helicase and RNase D C-terminal UP12_09480 SM00487 DEAD-like helicases superfamily UP12_09480 SM00490 helicase superfamily c-terminal domain UP12_09480 SM00956 UP12_09480 UP12_09530 SM00861 Transketolase, pyrimidine binding domain UP12_09535 SM00327 von Willebrand factor (vWF) type A domain UP12_09540 SM00382 ATPases associated with a variety of cellular activities UP12_09550 SM00257 Lysin motif UP12_09615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_09615 SM00245 tail specific protease UP12_09645 SM00014 Acid phosphatase homologues UP12_09670 SM00091 PAS domain UP12_09670 SM00382 ATPases associated with a variety of cellular activities UP12_09715 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_09765 SM00382 ATPases associated with a variety of cellular activities UP12_09815 SM00567 E-Z type HEAT repeats UP12_09815 SM00932 Scaffold protein Nfu/NifU N terminal UP12_09820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_09850 SM00357 Cold shock protein domain UP12_09885 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP12_09885 SM00475 5'-3' exonuclease UP12_09930 SM00491 UP12_09930 UP12_09940 SM00981 UP12_09940 UP12_09960 SM00487 DEAD-like helicases superfamily UP12_09960 SM00490 helicase superfamily c-terminal domain UP12_10020 SM00478 endonuclease III UP12_10020 SM00525 UP12_10020 UP12_10040 SM00479 UP12_10040 UP12_10040 SM00491 UP12_10040 UP12_10080 SM00851 MGS-like domain UP12_10130 SM00914 UP12_10130 UP12_10135 SM00028 Tetratricopeptide repeats UP12_10200 SM00138 Methyltransferase, chemotaxis proteins UP12_10205 SM00562 UP12_10205 UP12_10235 SM00411 bacterial (prokaryotic) histone like domain UP12_10280 SM01240 UP12_10280 UP12_10285 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_10325 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_10345 SM00257 Lysin motif UP12_10355 SM00487 DEAD-like helicases superfamily UP12_10355 SM00490 helicase superfamily c-terminal domain UP12_10380 SM00257 Lysin motif UP12_10395 SM00091 PAS domain UP12_10395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_10395 SM00387 Histidine kinase-like ATPases UP12_10395 SM00388 His Kinase A (phosphoacceptor) domain UP12_10400 SM00448 cheY-homologous receiver domain UP12_10400 SM00862 Transcriptional regulatory protein, C terminal UP12_10420 SM00363 S4 RNA-binding domain UP12_10555 SM00387 Histidine kinase-like ATPases UP12_10565 SM00936 Penicillin-binding protein 5, C-terminal domain UP12_10650 SM00028 Tetratricopeptide repeats UP12_10715 SM00849 Metallo-beta-lactamase superfamily UP12_10760 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_10760 SM00866 UP12_10760 UP12_10795 SM01350 UP12_10795 UP12_10820 SM00260 Two component signalling adaptor domain UP12_10850 SM00382 ATPases associated with a variety of cellular activities UP12_10860 SM00062 Bacterial periplasmic substrate-binding proteins UP12_10860 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_10870 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP12_10885 SM00861 Transketolase, pyrimidine binding domain UP12_10905 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_10915 SM00091 PAS domain UP12_10915 SM00382 ATPases associated with a variety of cellular activities UP12_10940 SM00448 cheY-homologous receiver domain UP12_10945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_10960 SM00363 S4 RNA-binding domain UP12_10965 SM00861 Transketolase, pyrimidine binding domain UP12_11000 SM00878 Biotin carboxylase C-terminal domain UP12_11045 SM00382 ATPases associated with a variety of cellular activities UP12_11055 SM00841 Elongation factor P, C-terminal UP12_11055 SM01185 UP12_11055 UP12_11090 SM00529 Helix-turn-helix diphteria tox regulatory element UP12_11100 SM00450 Rhodanese Homology Domain UP12_11120 SM00487 DEAD-like helicases superfamily UP12_11120 SM00490 helicase superfamily c-terminal domain UP12_11130 SM00530 Helix-turn-helix XRE-family like proteins UP12_11190 SM00382 ATPases associated with a variety of cellular activities UP12_11220 SM00849 Metallo-beta-lactamase superfamily UP12_11240 SM00631 UP12_11240 UP12_11260 SM00028 Tetratricopeptide repeats UP12_11290 SM00382 ATPases associated with a variety of cellular activities UP12_11295 SM00382 ATPases associated with a variety of cellular activities UP12_11380 SM00382 ATPases associated with a variety of cellular activities UP12_11395 SM00518 AP endonuclease family 2 UP12_11400 SM00487 DEAD-like helicases superfamily UP12_11400 SM00490 helicase superfamily c-terminal domain UP12_11435 SM00400 zinc finger UP12_11435 SM00493 UP12_11435 UP12_11450 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_11490 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_11540 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_11555 SM00271 DnaJ molecular chaperone homology domain UP12_11575 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_11580 SM00838 Elongation factor G C-terminus UP12_11615 SM00849 Metallo-beta-lactamase superfamily UP12_11625 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_11645 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_11655 SM01103 UP12_11655 UP12_11755 SM01007 Class II Aldolase and Adducin N-terminal domain UP12_11765 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_11780 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family UP12_11815 SM00382 ATPases associated with a variety of cellular activities UP12_11820 SM00062 Bacterial periplasmic substrate-binding proteins UP12_11840 SM00829 Enoylreductase UP12_11975 SM00732 Likely ribonuclease with RNase H fold. UP12_11985 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP12_11995 SM00382 ATPases associated with a variety of cellular activities UP12_12000 SM00062 Bacterial periplasmic substrate-binding proteins UP12_12000 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_12030 SM00028 Tetratricopeptide repeats UP12_12050 SM00382 ATPases associated with a variety of cellular activities UP12_12070 SM00287 Bacterial SH3 domain homologues UP12_12070 SM00646 UP12_12070 UP12_12080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_12080 SM00954 Region found in RelA / SpoT proteins UP12_12130 SM01323 UP12_12130 UP12_12150 SM00382 ATPases associated with a variety of cellular activities UP12_12155 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_12190 SM00257 Lysin motif UP12_12235 SM01317 UP12_12235 UP12_12330 SM00257 Lysin motif UP12_12340 SM01004 Delta-aminolevulinic acid dehydratase UP12_12375 SM00382 ATPases associated with a variety of cellular activities UP12_12375 SM00464 Found in ATP-dependent protease La (LON) UP12_12380 SM00382 ATPases associated with a variety of cellular activities UP12_12385 SM00382 ATPases associated with a variety of cellular activities UP12_12385 SM00994 ClpX C4-type zinc finger UP12_12385 SM01086 C-terminal, D2-small domain, of ClpB protein UP12_12410 SM01329 UP12_12410 UP12_12415 SM00917 LeuA allosteric (dimerisation) domain UP12_12525 SM00909 Sporulation and spore germination UP12_12535 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_12540 SM00857 Resolvase, N terminal domain UP12_12560 SM00646 UP12_12560 UP12_12580 SM00710 Parallel beta-helix repeats UP12_12585 SM00047 Lysozyme subfamily 2 UP12_12665 SM00507 HNH nucleases UP12_12770 SM00530 Helix-turn-helix XRE-family like proteins UP12_12775 SM00530 Helix-turn-helix XRE-family like proteins UP12_12785 SM00421 helix_turn_helix, Lux Regulon UP12_12840 SM00465 GIY-YIG type nucleases (URI domain) UP12_12850 SM00813 Alpha-L-arabinofuranosidase C-terminus UP12_12855 SM00893 Electron transfer flavoprotein domain UP12_12860 SM00893 Electron transfer flavoprotein domain UP12_12890 SM00463 Small MutS-related domain UP12_12890 SM00533 DNA-binding domain of DNA mismatch repair MUTS family UP12_12890 SM00534 ATPase domain of DNA mismatch repair MUTS family UP12_12895 SM00278 Helix-hairpin-helix DNA-binding motif class 1 UP12_12895 SM00481 DNA polymerase alpha chain like domain UP12_12895 SM00483 DNA polymerase X family UP12_12915 SM00873 B3/4 domain UP12_12915 SM00874 tRNA synthetase B5 domain UP12_12915 SM00896 Ferredoxin-fold anticodon binding domain UP12_12925 SM00967 RNA 2'-O ribose methyltransferase substrate binding UP12_12980 SM00448 cheY-homologous receiver domain UP12_12980 SM00850 LytTr DNA-binding domain UP12_12985 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_12995 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_12995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_13000 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain UP12_13015 SM00382 ATPases associated with a variety of cellular activities UP12_13040 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_13055 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain UP12_13055 SM01232 UP12_13055 UP12_13060 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs UP12_13060 SM00474 3'-5' exonuclease UP12_13060 SM00475 5'-3' exonuclease UP12_13060 SM00482 DNA polymerase A domain UP12_13065 SM00387 Histidine kinase-like ATPases UP12_13065 SM00388 His Kinase A (phosphoacceptor) domain UP12_13070 SM00448 cheY-homologous receiver domain UP12_13070 SM00862 Transcriptional regulatory protein, C terminal UP12_13080 SM01329 UP12_13080 UP12_13125 SM00919 Malic enzyme, NAD binding domain UP12_13125 SM01274 UP12_13125 UP12_13130 SM00481 DNA polymerase alpha chain like domain UP12_13160 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_13165 SM00849 Metallo-beta-lactamase superfamily UP12_13190 SM00852 Probable molybdopterin binding domain UP12_13235 SM00487 DEAD-like helicases superfamily UP12_13235 SM00490 helicase superfamily c-terminal domain UP12_13250 SM00421 helix_turn_helix, Lux Regulon UP12_13250 SM00448 cheY-homologous receiver domain UP12_13260 SM00448 cheY-homologous receiver domain UP12_13260 SM00862 Transcriptional regulatory protein, C terminal UP12_13265 SM00387 Histidine kinase-like ATPases UP12_13280 SM00382 ATPases associated with a variety of cellular activities UP12_13300 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_13320 SM00981 UP12_13320 UP12_13355 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. UP12_13360 SM00363 S4 RNA-binding domain UP12_13360 SM01390 UP12_13360 UP12_13390 SM00363 S4 RNA-binding domain UP12_13405 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_13415 SM00354 helix_turn _helix lactose operon repressor UP12_13420 SM00830 Chorismate mutase type II UP12_13445 SM00382 ATPases associated with a variety of cellular activities UP12_13445 SM00843 UP12_13445 UP12_13485 SM00919 Malic enzyme, NAD binding domain UP12_13485 SM01274 UP12_13485 UP12_13490 SM00849 Metallo-beta-lactamase superfamily UP12_13510 SM00046 Diacylglycerol kinase catalytic domain (presumed) UP12_13545 SM00420 helix_turn_helix, Deoxyribose operon repressor UP12_13550 SM00363 S4 RNA-binding domain UP12_13585 SM00450 Rhodanese Homology Domain UP12_13615 SM00342 helix_turn_helix, arabinose operon control protein UP12_13665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_13665 SM00091 PAS domain UP12_13680 SM00382 ATPases associated with a variety of cellular activities UP12_13690 SM00382 ATPases associated with a variety of cellular activities UP12_13695 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_13710 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_13770 SM00563 Phosphate acyltransferases UP12_13785 SM00382 ATPases associated with a variety of cellular activities UP12_13845 SM01234 UP12_13845 UP12_13850 SM00947 Carbonic anhydrase UP12_13890 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain UP12_14070 SM00530 Helix-turn-helix XRE-family like proteins UP12_14085 SM00244 prohibitin homologues UP12_14115 SM00028 Tetratricopeptide repeats UP12_14135 SM00644 UP12_14135 UP12_14195 SM00257 Lysin motif UP12_14295 SM00470 ParB-like nuclease domain UP12_14465 SM00530 Helix-turn-helix XRE-family like proteins UP12_14510 SM00644 UP12_14510 UP12_14575 SM00257 Lysin motif UP12_14650 SM00421 helix_turn_helix, Lux Regulon UP12_14670 SM00530 Helix-turn-helix XRE-family like proteins UP12_14675 SM00530 Helix-turn-helix XRE-family like proteins UP12_14685 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_14685 SM00876 Biotin and Thiamin Synthesis associated domain UP12_14720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_14720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_14720 SM00319 Homologues of the ligand binding domain of Tar UP12_14725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_14725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_14730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_14730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_14730 SM00319 Homologues of the ligand binding domain of Tar UP12_14735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_14735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_14735 SM00319 Homologues of the ligand binding domain of Tar UP12_14760 SM01091 Transporter associated domain UP12_14810 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_14820 SM00344 helix_turn_helix ASNC type UP12_14840 SM00387 Histidine kinase-like ATPases UP12_14840 SM00388 His Kinase A (phosphoacceptor) domain UP12_14850 SM01298 UP12_14850 UP12_14855 SM00479 UP12_14855 UP12_14880 SM00387 Histidine kinase-like ATPases UP12_14885 SM00448 cheY-homologous receiver domain UP12_14895 SM00382 ATPases associated with a variety of cellular activities UP12_14960 SM00421 helix_turn_helix, Lux Regulon UP12_14960 SM00448 cheY-homologous receiver domain UP12_14965 SM00387 Histidine kinase-like ATPases UP12_14985 SM00052 Putative diguanylate phosphodiesterase UP12_15035 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_15080 SM01002 Alanine dehydrogenase/PNT, C-terminal domain UP12_15080 SM01003 Alanine dehydrogenase/PNT, N-terminal domain UP12_15230 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_15270 SM00835 Cupin UP12_15325 SM00388 His Kinase A (phosphoacceptor) domain UP12_15330 SM00448 cheY-homologous receiver domain UP12_15330 SM00862 Transcriptional regulatory protein, C terminal UP12_15365 SM00487 DEAD-like helicases superfamily UP12_15395 SM00382 ATPases associated with a variety of cellular activities UP12_15415 SM00382 ATPases associated with a variety of cellular activities UP12_15415 SM00930 UP12_15415 UP12_15430 SM00493 UP12_15430 UP12_15480 SM00382 ATPases associated with a variety of cellular activities UP12_15495 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_15500 SM00448 cheY-homologous receiver domain UP12_15500 SM00862 Transcriptional regulatory protein, C terminal UP12_15505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_15505 SM00387 Histidine kinase-like ATPases UP12_15505 SM00388 His Kinase A (phosphoacceptor) domain UP12_15540 SM00421 helix_turn_helix, Lux Regulon UP12_15540 SM00448 cheY-homologous receiver domain UP12_15545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_15545 SM00387 Histidine kinase-like ATPases UP12_15575 SM00382 ATPases associated with a variety of cellular activities UP12_15590 SM00710 Parallel beta-helix repeats UP12_15595 SM00858 UP12_15595 UP12_15605 SM00354 helix_turn _helix lactose operon repressor UP12_15615 SM00387 Histidine kinase-like ATPases UP12_15615 SM00388 His Kinase A (phosphoacceptor) domain UP12_15620 SM00448 cheY-homologous receiver domain UP12_15620 SM00862 Transcriptional regulatory protein, C terminal UP12_15625 SM00382 ATPases associated with a variety of cellular activities UP12_15660 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_15720 SM00382 ATPases associated with a variety of cellular activities UP12_15745 SM00448 cheY-homologous receiver domain UP12_15750 SM00387 Histidine kinase-like ATPases UP12_15785 SM00267 diguanylate cyclase UP12_15805 SM00316 Ribosomal protein S1-like RNA-binding domain UP12_15805 SM00357 Cold shock protein domain UP12_15805 SM00955 UP12_15805 UP12_15820 SM00966 SpoVT / AbrB like domain UP12_15825 SM00530 Helix-turn-helix XRE-family like proteins UP12_15830 SM00530 Helix-turn-helix XRE-family like proteins UP12_15835 SM00530 Helix-turn-helix XRE-family like proteins UP12_15860 SM00116 Domain in cystathionine beta-synthase and other proteins. UP12_15860 SM00382 ATPases associated with a variety of cellular activities UP12_15900 SM00382 ATPases associated with a variety of cellular activities UP12_15910 SM01192 UP12_15910 UP12_15910 SM01193 UP12_15910 UP12_15930 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain UP12_15950 SM00382 ATPases associated with a variety of cellular activities UP12_15955 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_15955 SM00895 UP12_15955 UP12_15975 SM00382 ATPases associated with a variety of cellular activities UP12_15980 SM00382 ATPases associated with a variety of cellular activities UP12_16065 SM00530 Helix-turn-helix XRE-family like proteins UP12_16095 SM00382 ATPases associated with a variety of cellular activities UP12_16100 SM00382 ATPases associated with a variety of cellular activities UP12_16105 SM00382 ATPases associated with a variety of cellular activities UP12_16170 SM00947 Carbonic anhydrase UP12_16240 SM00028 Tetratricopeptide repeats UP12_16340 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_16340 SM00866 UP12_16340 UP12_16375 SM00382 ATPases associated with a variety of cellular activities UP12_16380 SM00487 DEAD-like helicases superfamily UP12_16380 SM00490 helicase superfamily c-terminal domain UP12_16415 SM00448 cheY-homologous receiver domain UP12_16415 SM00862 Transcriptional regulatory protein, C terminal UP12_16420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_16420 SM00387 Histidine kinase-like ATPases UP12_16420 SM00388 His Kinase A (phosphoacceptor) domain UP12_16440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_16450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_16450 SM00245 tail specific protease UP12_16470 SM00382 ATPases associated with a variety of cellular activities UP12_16495 SM00937 UP12_16495 UP12_16500 SM00957 SecA DEAD-like domain UP12_16500 SM00958 SecA preprotein cross-linking domain UP12_16510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_16510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_16590 SM00487 DEAD-like helicases superfamily UP12_16590 SM00490 helicase superfamily c-terminal domain UP12_16600 SM00421 helix_turn_helix, Lux Regulon UP12_16600 SM00448 cheY-homologous receiver domain UP12_16605 SM00387 Histidine kinase-like ATPases UP12_16650 SM00984 UDP binding domain UP12_16675 SM00646 UP12_16675 UP12_16705 SM00382 ATPases associated with a variety of cellular activities UP12_16745 SM00047 Lysozyme subfamily 2 UP12_16745 SM00287 Bacterial SH3 domain homologues UP12_16770 SM00342 helix_turn_helix, arabinose operon control protein UP12_16770 SM00448 cheY-homologous receiver domain UP12_16775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_16775 SM00387 Histidine kinase-like ATPases UP12_16800 SM00354 helix_turn _helix lactose operon repressor UP12_16855 SM00854 Bacterial capsule synthesis protein PGA_cap UP12_16885 SM00354 helix_turn _helix lactose operon repressor UP12_16900 SM00382 ATPases associated with a variety of cellular activities UP12_16915 SM00903 Flavin reductase like domain UP12_16935 SM00344 helix_turn_helix ASNC type UP12_16950 SM00984 UDP binding domain UP12_16960 SM00487 DEAD-like helicases superfamily UP12_16960 SM00490 helicase superfamily c-terminal domain UP12_16965 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_16965 SM00091 PAS domain UP12_17020 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_17030 SM00014 Acid phosphatase homologues UP12_17040 SM00062 Bacterial periplasmic substrate-binding proteins UP12_17050 SM00382 ATPases associated with a variety of cellular activities UP12_17060 SM00938 Nitrogen regulatory protein P-II UP12_17085 SM00382 ATPases associated with a variety of cellular activities UP12_17110 SM00833 Cobalamin synthesis protein cobW C-terminal domain UP12_17120 SM00729 Elongator protein 3, MiaB family, Radical SAM UP12_17140 SM00327 von Willebrand factor (vWF) type A domain UP12_17145 SM00327 von Willebrand factor (vWF) type A domain UP12_17180 SM00382 ATPases associated with a variety of cellular activities UP12_17240 SM00226 Low molecular weight phosphatase family UP12_17275 SM00937 UP12_17275 UP12_17290 SM00919 Malic enzyme, NAD binding domain UP12_17290 SM01274 UP12_17290 UP12_17305 SM00357 Cold shock protein domain UP12_17305 SM00382 ATPases associated with a variety of cellular activities UP12_17305 SM00959 Rho termination factor, N-terminal domain UP12_17330 SM00448 cheY-homologous receiver domain UP12_17355 SM00382 ATPases associated with a variety of cellular activities UP12_17405 SM00155 Phospholipase D. Active site motifs. UP12_17425 SM00382 ATPases associated with a variety of cellular activities UP12_17430 SM00155 Phospholipase D. Active site motifs. UP12_17440 SM00836 DALR anticodon binding domain UP12_17440 SM01016 Arginyl tRNA synthetase N terminal dom UP12_17495 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. UP12_17520 SM00028 Tetratricopeptide repeats UP12_17530 SM00860 SMI1 / KNR4 family UP12_17595 SM00344 helix_turn_helix ASNC type UP12_17665 SM00858 UP12_17665 UP12_17700 SM00835 Cupin UP12_17725 SM00986 Uracil DNA glycosylase superfamily UP12_17725 SM00987 UreE urease accessory protein, C-terminal domain UP12_17750 SM00640 Glycosyl hydrolases family 32 UP12_17760 SM01061 CAT RNA binding domain UP12_17840 SM00342 helix_turn_helix, arabinose operon control protein UP12_17915 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase UP12_17925 SM00382 ATPases associated with a variety of cellular activities UP12_17935 SM00062 Bacterial periplasmic substrate-binding proteins UP12_17935 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. UP12_17945 SM00954 Region found in RelA / SpoT proteins UP12_17955 SM00382 ATPases associated with a variety of cellular activities UP12_17965 SM00710 Parallel beta-helix repeats UP12_18020 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase UP12_18040 SM00656 UP12_18040 UP12_18045 SM00382 ATPases associated with a variety of cellular activities UP12_18050 SM00382 ATPases associated with a variety of cellular activities UP12_18065 SM00382 ATPases associated with a variety of cellular activities UP12_18085 SM00382 ATPases associated with a variety of cellular activities UP12_18100 SM00725 NEAr Transporter domain UP12_18105 SM00725 NEAr Transporter domain UP12_18110 SM00725 NEAr Transporter domain UP12_18205 SM00870 UP12_18205 UP12_18210 SM00530 Helix-turn-helix XRE-family like proteins UP12_18215 SM00530 Helix-turn-helix XRE-family like proteins UP12_18290 SM01061 CAT RNA binding domain UP12_18300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_18310 SM00382 ATPases associated with a variety of cellular activities UP12_18360 SM00347 helix_turn_helix multiple antibiotic resistance protein UP12_18360 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_18365 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain UP12_18375 SM01133 UP12_18375 UP12_18425 SM00421 helix_turn_helix, Lux Regulon UP12_18435 SM00422 helix_turn_helix, mercury resistance UP12_18445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) UP12_18445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). UP12_18510 SM00354 helix_turn _helix lactose operon repressor UP12_18555 SM00382 ATPases associated with a variety of cellular activities UP12_18600 SM00382 ATPases associated with a variety of cellular activities UP12_18610 SM00028 Tetratricopeptide repeats UP12_18615 SM01061 CAT RNA binding domain UP12_18655 SM00530 Helix-turn-helix XRE-family like proteins UP12_18670 SM00354 helix_turn _helix lactose operon repressor UP12_18720 SM00345 helix_turn_helix gluconate operon transcriptional repressor UP12_18720 SM00866 UP12_18720 UP12_18755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_18755 SM00387 Histidine kinase-like ATPases UP12_18755 SM00388 His Kinase A (phosphoacceptor) domain UP12_18760 SM00448 cheY-homologous receiver domain UP12_18760 SM00862 Transcriptional regulatory protein, C terminal UP12_18770 SM00849 Metallo-beta-lactamase superfamily UP12_18780 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor UP12_18840 SM00382 ATPases associated with a variety of cellular activities UP12_18860 SM00382 ATPases associated with a variety of cellular activities UP12_18870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. UP12_18875 SM00849 Metallo-beta-lactamase superfamily UP12_18890 SM00091 PAS domain UP12_18890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain UP12_18890 SM00387 Histidine kinase-like ATPases UP12_18890 SM00388 His Kinase A (phosphoacceptor) domain UP12_18895 SM00448 cheY-homologous receiver domain UP12_18895 SM00862 Transcriptional regulatory protein, C terminal UP12_18935 SM00788 Adenylosuccinate synthetase UP12_18955 SM00382 ATPases associated with a variety of cellular activities UP12_18975 SM00822 UP12_18975 UP12_18995 SM00823 Phosphopantetheine attachment site UP12_19000 SM00923 MbtH-like protein UP12_19005 SM00342 helix_turn_helix, arabinose operon control protein UP12_19030 SM00267 diguanylate cyclase UP12_19040 SM01131 UP12_19040 UP12_19060 SM01060 UP12_19060 UP12_19085 SM00382 ATPases associated with a variety of cellular activities UP12_19135 SM00470 ParB-like nuclease domain UP12_19150 SM00470 ParB-like nuclease domain UP12_19160 SM01228 UP12_19160 UP12_19170 SM00393 Putative single-stranded nucleic acids-binding domain UP12_19170 SM01245 UP12_19170 UP12_19335 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain UP12_19335 SM00437 Bacterial DNA topoisomerase I DNA-binding domain UP12_19335 SM00493 UP12_19335 UP12_19410 SM00530 Helix-turn-helix XRE-family like proteins UP12_19565 SM00487 DEAD-like helicases superfamily UP12_19565 SM00490 helicase superfamily c-terminal domain UP12_19585 SM00028 Tetratricopeptide repeats