VT48_00005 SM00382 ATPases associated with a variety of cellular activities VT48_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain VT48_00010 SM00480 DNA polymerase III beta subunit VT48_00030 SM00387 Histidine kinase-like ATPases VT48_00030 SM00433 TopoisomeraseII VT48_00035 SM00434 DNA Topoisomerase IV VT48_00110 SM00465 GIY-YIG type nucleases (URI domain) VT48_00120 SM00966 SpoVT / AbrB like domain VT48_00135 SM01208 VT48_00135 VT48_00140 SM00493 VT48_00140 VT48_00145 SM00650 Ribosomal RNA adenine dimethylases VT48_00190 SM01400 VT48_00190 VT48_00210 SM00487 DEAD-like helicases superfamily VT48_00210 SM00490 helicase superfamily c-terminal domain VT48_00210 SM00982 VT48_00210 VT48_00210 SM01058 CarD-like/TRCF domain VT48_00215 SM00966 SpoVT / AbrB like domain VT48_00230 SM00363 S4 RNA-binding domain VT48_00250 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_00265 SM00331 Sigma factor PP2C-like phosphatases VT48_00265 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain VT48_00275 SM00220 Serine/Threonine protein kinases, catalytic domain VT48_00280 SM00977 TilS substrate C-terminal domain VT48_00290 SM00382 ATPases associated with a variety of cellular activities VT48_00335 SM00905 Dihydroneopterin aldolase VT48_00345 SM00530 Helix-turn-helix XRE-family like proteins VT48_00390 SM00382 ATPases associated with a variety of cellular activities VT48_00390 SM01086 C-terminal, D2-small domain, of ClpB protein VT48_00395 SM00382 ATPases associated with a variety of cellular activities VT48_00405 SM00670 Large family of predicted nucleotide-binding domains VT48_00430 SM00840 VT48_00430 VT48_00435 SM00535 Ribonuclease III family VT48_00440 SM00967 RNA 2'-O ribose methyltransferase substrate binding VT48_00460 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VT48_00460 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VT48_00465 SM00649 Ribosomal protein L11/L12 VT48_00495 SM00663 RNA polymerase I subunit A N-terminus VT48_00515 SM00838 Elongation factor G C-terminus VT48_00515 SM00889 Elongation factor G, domain IV VT48_00530 SM01403 VT48_00530 VT48_00550 SM01382 VT48_00550 VT48_00550 SM01383 VT48_00550 VT48_00565 SM00322 K homology RNA-binding domain VT48_00585 SM01374 VT48_00585 VT48_00590 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VT48_00650 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_00670 SM00662 RNA polymerases D VT48_00680 SM00382 ATPases associated with a variety of cellular activities VT48_00685 SM00382 ATPases associated with a variety of cellular activities VT48_00755 SM00646 VT48_00755 VT48_00770 SM01251 VT48_00770 VT48_00920 SM00382 ATPases associated with a variety of cellular activities VT48_00930 SM00382 ATPases associated with a variety of cellular activities VT48_00950 SM00382 ATPases associated with a variety of cellular activities VT48_00985 SM00382 ATPases associated with a variety of cellular activities VT48_01035 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_01040 SM00382 ATPases associated with a variety of cellular activities VT48_01050 SM00530 Helix-turn-helix XRE-family like proteins VT48_01065 SM00342 helix_turn_helix, arabinose operon control protein VT48_01110 SM00825 Beta-ketoacyl synthase VT48_01115 SM00530 Helix-turn-helix XRE-family like proteins VT48_01125 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VT48_01150 SM00450 Rhodanese Homology Domain VT48_01155 SM00450 Rhodanese Homology Domain VT48_01160 SM00450 Rhodanese Homology Domain VT48_01160 SM00849 Metallo-beta-lactamase superfamily VT48_01175 SM00946 Prolyl-tRNA synthetase, C-terminal VT48_01195 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_01225 SM00450 Rhodanese Homology Domain VT48_01240 SM01061 CAT RNA binding domain VT48_01275 SM00872 Alpha mannosidase, middle domain VT48_01380 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_01415 SM00387 Histidine kinase-like ATPases VT48_01420 SM00448 cheY-homologous receiver domain VT48_01440 SM00387 Histidine kinase-like ATPases VT48_01445 SM00448 cheY-homologous receiver domain VT48_01445 SM00850 LytTr DNA-binding domain VT48_01450 SM00382 ATPases associated with a variety of cellular activities VT48_01550 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_01550 SM00382 ATPases associated with a variety of cellular activities VT48_01595 SM00354 helix_turn _helix lactose operon repressor VT48_01710 SM00346 helix_turn_helix isocitrate lyase regulation VT48_01775 SM00062 Bacterial periplasmic substrate-binding proteins VT48_01790 SM00344 helix_turn_helix ASNC type VT48_01805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_01805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_01835 SM00382 ATPases associated with a variety of cellular activities VT48_01850 SM00823 Phosphopantetheine attachment site VT48_01855 SM00823 Phosphopantetheine attachment site VT48_01860 SM00823 Phosphopantetheine attachment site VT48_01865 SM00822 VT48_01865 VT48_01865 SM00823 Phosphopantetheine attachment site VT48_01870 SM00822 VT48_01870 VT48_01870 SM00823 Phosphopantetheine attachment site VT48_01875 SM00824 Thioesterase VT48_01890 SM00382 ATPases associated with a variety of cellular activities VT48_01910 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_01920 SM00342 helix_turn_helix, arabinose operon control protein VT48_01920 SM00871 Bacterial transcription activator, effector binding domain VT48_01935 SM00382 ATPases associated with a variety of cellular activities VT48_01945 SM00062 Bacterial periplasmic substrate-binding proteins VT48_01965 SM00710 Parallel beta-helix repeats VT48_01980 SM00062 Bacterial periplasmic substrate-binding proteins VT48_01980 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VT48_01990 SM00382 ATPases associated with a variety of cellular activities VT48_02015 SM00448 cheY-homologous receiver domain VT48_02015 SM00862 Transcriptional regulatory protein, C terminal VT48_02020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_02020 SM00387 Histidine kinase-like ATPases VT48_02020 SM00388 His Kinase A (phosphoacceptor) domain VT48_02025 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VT48_02050 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VT48_02065 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_02115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_02115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_02115 SM01049 VT48_02115 VT48_02130 SM00900 VT48_02130 VT48_02155 SM00894 Excalibur calcium-binding domain VT48_02180 SM00796 Allophanate hydrolase subunit 1 VT48_02185 SM00797 Allophanate hydrolase subunit 2 VT48_02190 SM00346 helix_turn_helix isocitrate lyase regulation VT48_02250 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_02250 SM00895 VT48_02250 VT48_02255 SM00342 helix_turn_helix, arabinose operon control protein VT48_02265 SM01329 VT48_02265 VT48_02270 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VT48_02270 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VT48_02270 SM00493 VT48_02270 VT48_02280 SM00267 diguanylate cyclase VT48_02365 SM00091 PAS domain VT48_02365 SM00387 Histidine kinase-like ATPases VT48_02370 SM00448 cheY-homologous receiver domain VT48_02390 SM00382 ATPases associated with a variety of cellular activities VT48_02430 SM00487 DEAD-like helicases superfamily VT48_02430 SM00490 helicase superfamily c-terminal domain VT48_02460 SM01005 Alanine racemase, C-terminal domain VT48_02490 SM00331 Sigma factor PP2C-like phosphatases VT48_02510 SM00331 Sigma factor PP2C-like phosphatases VT48_02510 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain VT48_02515 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_02515 SM00732 Likely ribonuclease with RNase H fold. VT48_02520 SM00731 SprT homologues. VT48_02530 SM00861 Transketolase, pyrimidine binding domain VT48_02545 SM00382 ATPases associated with a variety of cellular activities VT48_02590 SM00357 Cold shock protein domain VT48_02605 SM01061 CAT RNA binding domain VT48_02610 SM00829 Enoylreductase VT48_02615 SM00422 helix_turn_helix, mercury resistance VT48_02660 SM00870 VT48_02660 VT48_02670 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_02690 SM00850 LytTr DNA-binding domain VT48_02735 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_02755 SM00530 Helix-turn-helix XRE-family like proteins VT48_02845 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_02845 SM01240 VT48_02845 VT48_02850 SM00936 Penicillin-binding protein 5, C-terminal domain VT48_02855 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_02875 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_02895 SM00257 Lysin motif VT48_02895 SM00636 VT48_02895 VT48_02910 SM00382 ATPases associated with a variety of cellular activities VT48_02920 SM00493 VT48_02920 VT48_02985 SM00382 ATPases associated with a variety of cellular activities VT48_02995 SM00881 CoA binding domain VT48_03025 SM00883 Chaperonin 10 Kd subunit VT48_03035 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_03045 SM00287 Bacterial SH3 domain homologues VT48_03110 SM00460 Transglutaminase/protease-like homologues VT48_03130 SM00342 helix_turn_helix, arabinose operon control protein VT48_03135 SM00917 LeuA allosteric (dimerisation) domain VT48_03210 SM01001 AIR carboxylase VT48_03220 SM00998 Adenylosuccinate lyase C-terminus VT48_03235 SM01211 VT48_03235 VT48_03260 SM00798 AICARFT/IMPCHase bienzyme VT48_03260 SM00851 MGS-like domain VT48_03265 SM01209 VT48_03265 VT48_03265 SM01210 VT48_03265 VT48_03290 SM00882 Coenzyme A transferase VT48_03295 SM00882 Coenzyme A transferase VT48_03350 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VT48_03350 SM00292 breast cancer carboxy-terminal domain VT48_03350 SM00532 Ligase N family VT48_03390 SM00845 GatB domain VT48_03410 SM00046 Diacylglycerol kinase catalytic domain (presumed) VT48_03425 SM00860 SMI1 / KNR4 family VT48_03565 SM00382 ATPases associated with a variety of cellular activities VT48_03575 SM00422 helix_turn_helix, mercury resistance VT48_03585 SM00382 ATPases associated with a variety of cellular activities VT48_03590 SM00487 DEAD-like helicases superfamily VT48_03590 SM00490 helicase superfamily c-terminal domain VT48_03595 SM00829 Enoylreductase VT48_03625 SM00320 WD40 repeats VT48_03660 SM00387 Histidine kinase-like ATPases VT48_03665 SM00448 cheY-homologous receiver domain VT48_03680 SM00631 VT48_03680 VT48_03750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_03750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_03765 SM00642 Alpha-amylase domain VT48_03770 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_03770 SM00866 VT48_03770 VT48_03805 SM00226 Low molecular weight phosphatase family VT48_03885 SM00478 endonuclease III VT48_03910 SM00422 helix_turn_helix, mercury resistance VT48_03910 SM00871 Bacterial transcription activator, effector binding domain VT48_03930 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VT48_04015 SM00342 helix_turn_helix, arabinose operon control protein VT48_04025 SM00382 ATPases associated with a variety of cellular activities VT48_04050 SM00829 Enoylreductase VT48_04065 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_04085 SM00530 Helix-turn-helix XRE-family like proteins VT48_04150 SM00835 Cupin VT48_04170 SM00478 endonuclease III VT48_04200 SM00382 ATPases associated with a variety of cellular activities VT48_04205 SM00382 ATPases associated with a variety of cellular activities VT48_04210 SM00382 ATPases associated with a variety of cellular activities VT48_04375 SM00855 Phosphoglycerate mutase family VT48_04420 SM00382 ATPases associated with a variety of cellular activities VT48_04425 SM00062 Bacterial periplasmic substrate-binding proteins VT48_04450 SM00382 ATPases associated with a variety of cellular activities VT48_04485 SM00567 E-Z type HEAT repeats VT48_04500 SM00763 PrkA AAA domain VT48_04530 SM00357 Cold shock protein domain VT48_04535 SM00267 diguanylate cyclase VT48_04565 SM00138 Methyltransferase, chemotaxis proteins VT48_04565 SM00387 Histidine kinase-like ATPases VT48_04565 SM00388 His Kinase A (phosphoacceptor) domain VT48_04570 SM00318 Staphylococcal nuclease homologues VT48_04650 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VT48_04655 SM00421 helix_turn_helix, Lux Regulon VT48_04655 SM00448 cheY-homologous receiver domain VT48_04670 SM01060 VT48_04670 VT48_04690 SM00098 Alkaline phosphatase homologues VT48_04695 SM00257 Lysin motif VT48_04720 SM00563 Phosphate acyltransferases VT48_04725 SM01091 Transporter associated domain VT48_04735 SM01091 Transporter associated domain VT48_04785 SM00382 ATPases associated with a variety of cellular activities VT48_04790 SM00382 ATPases associated with a variety of cellular activities VT48_04805 SM00382 ATPases associated with a variety of cellular activities VT48_04845 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_04890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_04925 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_04955 SM00382 ATPases associated with a variety of cellular activities VT48_05025 SM00849 Metallo-beta-lactamase superfamily VT48_05055 SM00855 Phosphoglycerate mutase family VT48_05060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_05075 SM00914 VT48_05075 VT48_05085 SM01119 VT48_05085 VT48_05095 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_05120 SM00382 ATPases associated with a variety of cellular activities VT48_05295 SM00342 helix_turn_helix, arabinose operon control protein VT48_05330 SM01006 Siderophore biosynthesis protein domain VT48_05355 SM01018 B12 binding domain VT48_05370 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_05380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_05380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_05435 SM00859 Semialdehyde dehydrogenase, NAD binding domain VT48_05455 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VT48_05460 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VT48_05515 SM00825 Beta-ketoacyl synthase VT48_05525 SM00382 ATPases associated with a variety of cellular activities VT48_05530 SM00382 ATPases associated with a variety of cellular activities VT48_05575 SM00382 ATPases associated with a variety of cellular activities VT48_05580 SM00382 ATPases associated with a variety of cellular activities VT48_05610 SM00155 Phospholipase D. Active site motifs. VT48_05645 SM01118 VT48_05645 VT48_05655 SM00954 Region found in RelA / SpoT proteins VT48_05825 SM00530 Helix-turn-helix XRE-family like proteins VT48_06045 SM00257 Lysin motif VT48_06105 SM00644 VT48_06105 VT48_06140 SM00860 SMI1 / KNR4 family VT48_06160 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_06170 SM00028 Tetratricopeptide repeats VT48_06185 SM01059 Chloramphenicol acetyltransferase VT48_06190 SM00028 Tetratricopeptide repeats VT48_06200 SM00860 SMI1 / KNR4 family VT48_06265 SM01005 Alanine racemase, C-terminal domain VT48_06270 SM00829 Enoylreductase VT48_06280 SM00612 VT48_06280 VT48_06310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_06330 SM00257 Lysin motif VT48_06330 SM00644 VT48_06330 VT48_06355 SM01022 VT48_06355 VT48_06405 SM00829 Enoylreductase VT48_06415 SM00861 Transketolase, pyrimidine binding domain VT48_06420 SM01059 Chloramphenicol acetyltransferase VT48_06460 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_06485 SM00382 ATPases associated with a variety of cellular activities VT48_06505 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VT48_06515 SM00382 ATPases associated with a variety of cellular activities VT48_06550 SM00342 helix_turn_helix, arabinose operon control protein VT48_06575 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VT48_06585 SM00028 Tetratricopeptide repeats VT48_06600 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_06630 SM00530 Helix-turn-helix XRE-family like proteins VT48_06635 SM00448 cheY-homologous receiver domain VT48_06635 SM00862 Transcriptional regulatory protein, C terminal VT48_06640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_06640 SM00387 Histidine kinase-like ATPases VT48_06640 SM00388 His Kinase A (phosphoacceptor) domain VT48_06660 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_06660 SM00924 MgtE intracellular N domain VT48_06680 SM00422 helix_turn_helix, mercury resistance VT48_06695 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_06700 SM00052 Putative diguanylate phosphodiesterase VT48_06700 SM00267 diguanylate cyclase VT48_06760 SM00091 PAS domain VT48_06760 SM00387 Histidine kinase-like ATPases VT48_06760 SM00388 His Kinase A (phosphoacceptor) domain VT48_06795 SM01007 Class II Aldolase and Adducin N-terminal domain VT48_06810 SM00387 Histidine kinase-like ATPases VT48_06810 SM00388 His Kinase A (phosphoacceptor) domain VT48_06815 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_06830 SM00382 ATPases associated with a variety of cellular activities VT48_06830 SM01086 C-terminal, D2-small domain, of ClpB protein VT48_06905 SM00354 helix_turn _helix lactose operon repressor VT48_06910 SM01061 CAT RNA binding domain VT48_06940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_06940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_06965 SM00091 PAS domain VT48_06965 SM00387 Histidine kinase-like ATPases VT48_06965 SM00388 His Kinase A (phosphoacceptor) domain VT48_06990 SM00260 Two component signalling adaptor domain VT48_06990 SM00448 cheY-homologous receiver domain VT48_07000 SM00342 helix_turn_helix, arabinose operon control protein VT48_07020 SM00257 Lysin motif VT48_07035 SM00052 Putative diguanylate phosphodiesterase VT48_07140 SM00852 Probable molybdopterin binding domain VT48_07175 SM00382 ATPases associated with a variety of cellular activities VT48_07185 SM00420 helix_turn_helix, Deoxyribose operon repressor VT48_07185 SM01134 VT48_07185 VT48_07210 SM00382 ATPases associated with a variety of cellular activities VT48_07225 SM00966 SpoVT / AbrB like domain VT48_07230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VT48_07230 SM00091 PAS domain VT48_07230 SM00387 Histidine kinase-like ATPases VT48_07230 SM00388 His Kinase A (phosphoacceptor) domain VT48_07250 SM00849 Metallo-beta-lactamase superfamily VT48_07285 SM00861 Transketolase, pyrimidine binding domain VT48_07360 SM00838 Elongation factor G C-terminus VT48_07380 SM00670 Large family of predicted nucleotide-binding domains VT48_07405 SM00878 Biotin carboxylase C-terminal domain VT48_07455 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_07510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_07530 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains VT48_07565 SM00740 VT48_07565 VT48_07570 SM00740 VT48_07570 VT48_07625 SM00842 Cell division protein FtsA VT48_07630 SM00864 Tubulin/FtsZ family, GTPase domain VT48_07630 SM00865 Tubulin/FtsZ family, C-terminal domain VT48_07660 SM00858 VT48_07660 VT48_07685 SM00382 ATPases associated with a variety of cellular activities VT48_07715 SM00363 S4 RNA-binding domain VT48_07740 SM00363 S4 RNA-binding domain VT48_07765 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VT48_07770 SM00851 MGS-like domain VT48_07770 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VT48_07770 SM01209 VT48_07770 VT48_07785 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VT48_07835 SM00831 Cation transporter/ATPase, N-terminus VT48_07850 SM00072 Guanylate kinase homologues. VT48_07855 SM01409 VT48_07855 VT48_07865 SM00487 DEAD-like helicases superfamily VT48_07865 SM00490 helicase superfamily c-terminal domain VT48_07890 SM00331 Sigma factor PP2C-like phosphatases VT48_07890 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain VT48_07895 SM00220 Serine/Threonine protein kinases, catalytic domain VT48_07895 SM00740 VT48_07895 VT48_07910 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain VT48_07930 SM01120 VT48_07930 VT48_07930 SM01121 VT48_07930 VT48_07945 SM00487 DEAD-like helicases superfamily VT48_07945 SM00490 helicase superfamily c-terminal domain VT48_07960 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VT48_07965 SM00822 VT48_07965 VT48_07975 SM00358 Double-stranded RNA binding motif VT48_07975 SM00535 Ribonuclease III family VT48_07980 SM00968 SMC proteins Flexible Hinge Domain VT48_07985 SM00382 ATPases associated with a variety of cellular activities VT48_07985 SM00962 SRP54-type protein, GTPase domain VT48_07985 SM00963 SRP54-type protein, helical bundle domain VT48_07995 SM00382 ATPases associated with a variety of cellular activities VT48_07995 SM00962 SRP54-type protein, GTPase domain VT48_07995 SM00963 SRP54-type protein, helical bundle domain VT48_08055 SM00881 CoA binding domain VT48_08065 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VT48_08065 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VT48_08065 SM00493 VT48_08065 VT48_08085 SM00382 ATPases associated with a variety of cellular activities VT48_08085 SM01086 C-terminal, D2-small domain, of ClpB protein VT48_08125 SM00382 ATPases associated with a variety of cellular activities VT48_08175 SM00448 cheY-homologous receiver domain VT48_08210 SM00962 SRP54-type protein, GTPase domain VT48_08220 SM00448 cheY-homologous receiver domain VT48_08225 SM00073 Histidine Phosphotransfer domain VT48_08225 SM00260 Two component signalling adaptor domain VT48_08225 SM00387 Histidine kinase-like ATPases VT48_08225 SM01231 VT48_08225 VT48_08230 SM00260 Two component signalling adaptor domain VT48_08290 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_08300 SM00479 VT48_08300 VT48_08300 SM00481 DNA polymerase alpha chain like domain VT48_08305 SM01067 Cellulose binding domain VT48_08315 SM00633 Glycosyl hydrolase family 10 VT48_08330 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_08330 SM00322 K homology RNA-binding domain VT48_08365 SM00904 Riboflavin kinase VT48_08370 SM01387 VT48_08370 VT48_08375 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_08375 SM00322 K homology RNA-binding domain VT48_08410 SM00859 Semialdehyde dehydrogenase, NAD binding domain VT48_08420 SM01130 VT48_08420 VT48_08425 SM00849 Metallo-beta-lactamase superfamily VT48_08440 SM00382 ATPases associated with a variety of cellular activities VT48_08440 SM00843 VT48_08440 VT48_08445 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_08445 SM00866 VT48_08445 VT48_08470 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_08505 SM00852 Probable molybdopterin binding domain VT48_08510 SM00382 ATPases associated with a variety of cellular activities VT48_08515 SM00322 K homology RNA-binding domain VT48_08515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_08535 SM00829 Enoylreductase VT48_08545 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_08560 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VT48_08560 SM00534 ATPase domain of DNA mismatch repair MUTS family VT48_08565 SM00853 MutL C terminal dimerisation domain VT48_08565 SM01340 VT48_08565 VT48_08585 SM01058 CarD-like/TRCF domain VT48_08595 SM00028 Tetratricopeptide repeats VT48_08680 SM00646 VT48_08680 VT48_08685 SM00382 ATPases associated with a variety of cellular activities VT48_08700 SM00422 helix_turn_helix, mercury resistance VT48_08705 SM01230 VT48_08705 VT48_08725 SM00860 SMI1 / KNR4 family VT48_08745 SM00829 Enoylreductase VT48_08750 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_08770 SM00506 Appr-1"-p processing enzyme VT48_08780 SM00014 Acid phosphatase homologues VT48_08830 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen VT48_08900 SM00020 Trypsin-like serine protease VT48_08935 SM00257 Lysin motif VT48_08940 SM00857 Resolvase, N terminal domain VT48_08950 SM00861 Transketolase, pyrimidine binding domain VT48_09035 SM01207 VT48_09035 VT48_09040 SM00881 CoA binding domain VT48_09045 SM00387 Histidine kinase-like ATPases VT48_09045 SM00433 TopoisomeraseII VT48_09050 SM00434 DNA Topoisomerase IV VT48_09065 SM01329 VT48_09065 VT48_09070 SM01266 VT48_09070 VT48_09075 SM00226 Low molecular weight phosphatase family VT48_09085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VT48_09175 SM00422 helix_turn_helix, mercury resistance VT48_09190 SM01061 CAT RNA binding domain VT48_09200 SM00387 Histidine kinase-like ATPases VT48_09200 SM00388 His Kinase A (phosphoacceptor) domain VT48_09205 SM00448 cheY-homologous receiver domain VT48_09205 SM00862 Transcriptional regulatory protein, C terminal VT48_09215 SM00606 Cellulose Binding Domain Type IV VT48_09245 SM00354 helix_turn _helix lactose operon repressor VT48_09280 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_09290 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_09325 SM00155 Phospholipase D. Active site motifs. VT48_09335 SM00100 Cyclic nucleotide-monophosphate binding domain VT48_09385 SM00878 Biotin carboxylase C-terminal domain VT48_09410 SM00420 helix_turn_helix, Deoxyribose operon repressor VT48_09410 SM01134 VT48_09410 VT48_09530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VT48_09560 SM00382 ATPases associated with a variety of cellular activities VT48_09565 SM00382 ATPases associated with a variety of cellular activities VT48_09570 SM00422 helix_turn_helix, mercury resistance VT48_09585 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VT48_09600 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VT48_09665 SM00849 Metallo-beta-lactamase superfamily VT48_09670 SM00871 Bacterial transcription activator, effector binding domain VT48_09685 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VT48_09725 SM00257 Lysin motif VT48_09730 SM00341 Helicase and RNase D C-terminal VT48_09730 SM00487 DEAD-like helicases superfamily VT48_09730 SM00490 helicase superfamily c-terminal domain VT48_09730 SM00956 VT48_09730 VT48_09785 SM00861 Transketolase, pyrimidine binding domain VT48_09790 SM00327 von Willebrand factor (vWF) type A domain VT48_09795 SM00382 ATPases associated with a variety of cellular activities VT48_09805 SM00257 Lysin motif VT48_09870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_09870 SM00245 tail specific protease VT48_09900 SM00014 Acid phosphatase homologues VT48_09925 SM00091 PAS domain VT48_09925 SM00382 ATPases associated with a variety of cellular activities VT48_09970 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_10070 SM00567 E-Z type HEAT repeats VT48_10070 SM00932 Scaffold protein Nfu/NifU N terminal VT48_10075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_10105 SM00357 Cold shock protein domain VT48_10140 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VT48_10140 SM00475 5'-3' exonuclease VT48_10190 SM00491 VT48_10190 VT48_10200 SM00981 VT48_10200 VT48_10220 SM00487 DEAD-like helicases superfamily VT48_10220 SM00490 helicase superfamily c-terminal domain VT48_10280 SM00478 endonuclease III VT48_10280 SM00525 VT48_10280 VT48_10300 SM00479 VT48_10300 VT48_10300 SM00491 VT48_10300 VT48_10340 SM00851 MGS-like domain VT48_10390 SM00914 VT48_10390 VT48_10395 SM00028 Tetratricopeptide repeats VT48_10460 SM00138 Methyltransferase, chemotaxis proteins VT48_10465 SM00562 VT48_10465 VT48_10495 SM00411 bacterial (prokaryotic) histone like domain VT48_10540 SM01240 VT48_10540 VT48_10545 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_10585 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VT48_10605 SM00257 Lysin motif VT48_10615 SM00487 DEAD-like helicases superfamily VT48_10615 SM00490 helicase superfamily c-terminal domain VT48_10640 SM00257 Lysin motif VT48_10655 SM00091 PAS domain VT48_10655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_10655 SM00387 Histidine kinase-like ATPases VT48_10655 SM00388 His Kinase A (phosphoacceptor) domain VT48_10660 SM00448 cheY-homologous receiver domain VT48_10660 SM00862 Transcriptional regulatory protein, C terminal VT48_10680 SM00363 S4 RNA-binding domain VT48_10815 SM00387 Histidine kinase-like ATPases VT48_10825 SM00936 Penicillin-binding protein 5, C-terminal domain VT48_10900 SM00028 Tetratricopeptide repeats VT48_10970 SM00849 Metallo-beta-lactamase superfamily VT48_11015 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_11015 SM00866 VT48_11015 VT48_11055 SM01350 VT48_11055 VT48_11075 SM00260 Two component signalling adaptor domain VT48_11105 SM00382 ATPases associated with a variety of cellular activities VT48_11115 SM00062 Bacterial periplasmic substrate-binding proteins VT48_11115 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VT48_11125 SM00046 Diacylglycerol kinase catalytic domain (presumed) VT48_11140 SM00861 Transketolase, pyrimidine binding domain VT48_11160 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VT48_11170 SM00091 PAS domain VT48_11170 SM00382 ATPases associated with a variety of cellular activities VT48_11190 SM00448 cheY-homologous receiver domain VT48_11195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_11210 SM00363 S4 RNA-binding domain VT48_11215 SM00861 Transketolase, pyrimidine binding domain VT48_11250 SM00878 Biotin carboxylase C-terminal domain VT48_11295 SM00382 ATPases associated with a variety of cellular activities VT48_11305 SM00841 Elongation factor P, C-terminal VT48_11305 SM01185 VT48_11305 VT48_11340 SM00529 Helix-turn-helix diphteria tox regulatory element VT48_11350 SM00450 Rhodanese Homology Domain VT48_11370 SM00487 DEAD-like helicases superfamily VT48_11370 SM00490 helicase superfamily c-terminal domain VT48_11380 SM00530 Helix-turn-helix XRE-family like proteins VT48_11440 SM00382 ATPases associated with a variety of cellular activities VT48_11465 SM00849 Metallo-beta-lactamase superfamily VT48_11485 SM00631 VT48_11485 VT48_11505 SM00028 Tetratricopeptide repeats VT48_11540 SM00382 ATPases associated with a variety of cellular activities VT48_11545 SM00382 ATPases associated with a variety of cellular activities VT48_11630 SM00382 ATPases associated with a variety of cellular activities VT48_11645 SM00518 AP endonuclease family 2 VT48_11650 SM00487 DEAD-like helicases superfamily VT48_11650 SM00490 helicase superfamily c-terminal domain VT48_11685 SM00400 zinc finger VT48_11685 SM00493 VT48_11685 VT48_11700 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_11740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_11790 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_11805 SM00271 DnaJ molecular chaperone homology domain VT48_11825 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_11830 SM00838 Elongation factor G C-terminus VT48_11865 SM00849 Metallo-beta-lactamase superfamily VT48_11875 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VT48_11895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_11905 SM01103 VT48_11905 VT48_11940 SM00028 Tetratricopeptide repeats VT48_11955 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_11955 SM00895 VT48_11955 VT48_11970 SM00861 Transketolase, pyrimidine binding domain VT48_12035 SM00382 ATPases associated with a variety of cellular activities VT48_12065 SM01007 Class II Aldolase and Adducin N-terminal domain VT48_12075 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_12085 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_12100 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VT48_12185 SM00382 ATPases associated with a variety of cellular activities VT48_12190 SM00062 Bacterial periplasmic substrate-binding proteins VT48_12210 SM00829 Enoylreductase VT48_12250 SM00382 ATPases associated with a variety of cellular activities VT48_12355 SM00732 Likely ribonuclease with RNase H fold. VT48_12365 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VT48_12375 SM00382 ATPases associated with a variety of cellular activities VT48_12380 SM00062 Bacterial periplasmic substrate-binding proteins VT48_12380 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VT48_12410 SM00028 Tetratricopeptide repeats VT48_12430 SM00382 ATPases associated with a variety of cellular activities VT48_12450 SM00287 Bacterial SH3 domain homologues VT48_12450 SM00646 VT48_12450 VT48_12460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_12460 SM00954 Region found in RelA / SpoT proteins VT48_12510 SM01323 VT48_12510 VT48_12530 SM00382 ATPases associated with a variety of cellular activities VT48_12535 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VT48_12570 SM00257 Lysin motif VT48_12615 SM01317 VT48_12615 VT48_12710 SM00257 Lysin motif VT48_12720 SM01004 Delta-aminolevulinic acid dehydratase VT48_12755 SM00382 ATPases associated with a variety of cellular activities VT48_12755 SM00464 Found in ATP-dependent protease La (LON) VT48_12760 SM00382 ATPases associated with a variety of cellular activities VT48_12765 SM00382 ATPases associated with a variety of cellular activities VT48_12765 SM00994 ClpX C4-type zinc finger VT48_12765 SM01086 C-terminal, D2-small domain, of ClpB protein VT48_12790 SM01329 VT48_12790 VT48_12795 SM00917 LeuA allosteric (dimerisation) domain VT48_12850 SM00612 VT48_12850 VT48_12905 SM00909 Sporulation and spore germination VT48_12915 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_12920 SM00421 helix_turn_helix, Lux Regulon VT48_12975 SM00465 GIY-YIG type nucleases (URI domain) VT48_12985 SM00813 Alpha-L-arabinofuranosidase C-terminus VT48_12990 SM00893 Electron transfer flavoprotein domain VT48_12995 SM00893 Electron transfer flavoprotein domain VT48_13025 SM00463 Small MutS-related domain VT48_13025 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VT48_13025 SM00534 ATPase domain of DNA mismatch repair MUTS family VT48_13030 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VT48_13030 SM00481 DNA polymerase alpha chain like domain VT48_13030 SM00483 DNA polymerase X family VT48_13050 SM00873 B3/4 domain VT48_13050 SM00874 tRNA synthetase B5 domain VT48_13050 SM00896 Ferredoxin-fold anticodon binding domain VT48_13060 SM00967 RNA 2'-O ribose methyltransferase substrate binding VT48_13115 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VT48_13115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_13120 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VT48_13135 SM00382 ATPases associated with a variety of cellular activities VT48_13160 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VT48_13175 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VT48_13175 SM01232 VT48_13175 VT48_13180 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VT48_13180 SM00474 3'-5' exonuclease VT48_13180 SM00475 5'-3' exonuclease VT48_13180 SM00482 DNA polymerase A domain VT48_13185 SM00387 Histidine kinase-like ATPases VT48_13185 SM00388 His Kinase A (phosphoacceptor) domain VT48_13190 SM00448 cheY-homologous receiver domain VT48_13190 SM00862 Transcriptional regulatory protein, C terminal VT48_13200 SM01329 VT48_13200 VT48_13245 SM00919 Malic enzyme, NAD binding domain VT48_13245 SM01274 VT48_13245 VT48_13250 SM00481 DNA polymerase alpha chain like domain VT48_13280 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_13285 SM00849 Metallo-beta-lactamase superfamily VT48_13310 SM00852 Probable molybdopterin binding domain VT48_13355 SM00487 DEAD-like helicases superfamily VT48_13355 SM00490 helicase superfamily c-terminal domain VT48_13370 SM00421 helix_turn_helix, Lux Regulon VT48_13370 SM00448 cheY-homologous receiver domain VT48_13380 SM00448 cheY-homologous receiver domain VT48_13380 SM00862 Transcriptional regulatory protein, C terminal VT48_13385 SM00387 Histidine kinase-like ATPases VT48_13400 SM00382 ATPases associated with a variety of cellular activities VT48_13420 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_13445 SM00981 VT48_13445 VT48_13480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VT48_13485 SM00363 S4 RNA-binding domain VT48_13485 SM01390 VT48_13485 VT48_13505 SM00487 DEAD-like helicases superfamily VT48_13535 SM00363 S4 RNA-binding domain VT48_13550 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_13560 SM00354 helix_turn _helix lactose operon repressor VT48_13565 SM00830 Chorismate mutase type II VT48_13590 SM00382 ATPases associated with a variety of cellular activities VT48_13590 SM00843 VT48_13590 VT48_13630 SM00919 Malic enzyme, NAD binding domain VT48_13630 SM01274 VT48_13630 VT48_13635 SM00849 Metallo-beta-lactamase superfamily VT48_13655 SM00046 Diacylglycerol kinase catalytic domain (presumed) VT48_13690 SM00420 helix_turn_helix, Deoxyribose operon repressor VT48_13695 SM00363 S4 RNA-binding domain VT48_13730 SM00450 Rhodanese Homology Domain VT48_13760 SM00342 helix_turn_helix, arabinose operon control protein VT48_13810 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VT48_13810 SM00091 PAS domain VT48_13825 SM00382 ATPases associated with a variety of cellular activities VT48_13835 SM00382 ATPases associated with a variety of cellular activities VT48_13840 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_13860 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_13925 SM00563 Phosphate acyltransferases VT48_13940 SM00382 ATPases associated with a variety of cellular activities VT48_14000 SM01234 VT48_14000 VT48_14005 SM00947 Carbonic anhydrase VT48_14035 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VT48_14210 SM00530 Helix-turn-helix XRE-family like proteins VT48_14225 SM00244 prohibitin homologues VT48_14265 SM00644 VT48_14265 VT48_14340 SM00257 Lysin motif VT48_14415 SM00421 helix_turn_helix, Lux Regulon VT48_14435 SM00530 Helix-turn-helix XRE-family like proteins VT48_14440 SM00530 Helix-turn-helix XRE-family like proteins VT48_14450 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_14450 SM00876 Biotin and Thiamin Synthesis associated domain VT48_14485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_14485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_14485 SM00319 Homologues of the ligand binding domain of Tar VT48_14490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_14490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_14495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_14495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_14495 SM00319 Homologues of the ligand binding domain of Tar VT48_14500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_14500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_14500 SM00319 Homologues of the ligand binding domain of Tar VT48_14525 SM01091 Transporter associated domain VT48_14575 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_14585 SM00344 helix_turn_helix ASNC type VT48_14605 SM00387 Histidine kinase-like ATPases VT48_14605 SM00388 His Kinase A (phosphoacceptor) domain VT48_14610 SM01298 VT48_14610 VT48_14615 SM00479 VT48_14615 VT48_14640 SM00387 Histidine kinase-like ATPases VT48_14645 SM00448 cheY-homologous receiver domain VT48_14655 SM00382 ATPases associated with a variety of cellular activities VT48_14725 SM00421 helix_turn_helix, Lux Regulon VT48_14725 SM00448 cheY-homologous receiver domain VT48_14730 SM00387 Histidine kinase-like ATPases VT48_14755 SM00052 Putative diguanylate phosphodiesterase VT48_14805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_14850 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VT48_14850 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VT48_14995 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_15040 SM00835 Cupin VT48_15100 SM00388 His Kinase A (phosphoacceptor) domain VT48_15105 SM00448 cheY-homologous receiver domain VT48_15105 SM00862 Transcriptional regulatory protein, C terminal VT48_15165 SM00382 ATPases associated with a variety of cellular activities VT48_15190 SM00382 ATPases associated with a variety of cellular activities VT48_15190 SM00930 VT48_15190 VT48_15205 SM00493 VT48_15205 VT48_15255 SM00382 ATPases associated with a variety of cellular activities VT48_15270 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_15275 SM00448 cheY-homologous receiver domain VT48_15275 SM00862 Transcriptional regulatory protein, C terminal VT48_15280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_15280 SM00387 Histidine kinase-like ATPases VT48_15280 SM00388 His Kinase A (phosphoacceptor) domain VT48_15315 SM00421 helix_turn_helix, Lux Regulon VT48_15315 SM00448 cheY-homologous receiver domain VT48_15320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_15320 SM00387 Histidine kinase-like ATPases VT48_15385 SM01130 VT48_15385 VT48_15390 SM00382 ATPases associated with a variety of cellular activities VT48_15405 SM00710 Parallel beta-helix repeats VT48_15410 SM00858 VT48_15410 VT48_15420 SM00354 helix_turn _helix lactose operon repressor VT48_15430 SM00387 Histidine kinase-like ATPases VT48_15430 SM00388 His Kinase A (phosphoacceptor) domain VT48_15435 SM00448 cheY-homologous receiver domain VT48_15435 SM00862 Transcriptional regulatory protein, C terminal VT48_15440 SM00382 ATPases associated with a variety of cellular activities VT48_15470 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_15530 SM00382 ATPases associated with a variety of cellular activities VT48_15555 SM00448 cheY-homologous receiver domain VT48_15560 SM00387 Histidine kinase-like ATPases VT48_15600 SM00267 diguanylate cyclase VT48_15625 SM00316 Ribosomal protein S1-like RNA-binding domain VT48_15625 SM00357 Cold shock protein domain VT48_15625 SM00955 VT48_15625 VT48_15640 SM00966 SpoVT / AbrB like domain VT48_15645 SM00530 Helix-turn-helix XRE-family like proteins VT48_15650 SM00530 Helix-turn-helix XRE-family like proteins VT48_15655 SM00530 Helix-turn-helix XRE-family like proteins VT48_15680 SM00116 Domain in cystathionine beta-synthase and other proteins. VT48_15680 SM00382 ATPases associated with a variety of cellular activities VT48_15720 SM00382 ATPases associated with a variety of cellular activities VT48_15730 SM01192 VT48_15730 VT48_15730 SM01193 VT48_15730 VT48_15750 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VT48_15770 SM00382 ATPases associated with a variety of cellular activities VT48_15775 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_15775 SM00895 VT48_15775 VT48_15795 SM00382 ATPases associated with a variety of cellular activities VT48_15800 SM00382 ATPases associated with a variety of cellular activities VT48_15885 SM00530 Helix-turn-helix XRE-family like proteins VT48_15915 SM00382 ATPases associated with a variety of cellular activities VT48_15960 SM00947 Carbonic anhydrase VT48_16015 SM00028 Tetratricopeptide repeats VT48_16115 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_16115 SM00866 VT48_16115 VT48_16150 SM00382 ATPases associated with a variety of cellular activities VT48_16155 SM00487 DEAD-like helicases superfamily VT48_16155 SM00490 helicase superfamily c-terminal domain VT48_16185 SM00448 cheY-homologous receiver domain VT48_16185 SM00862 Transcriptional regulatory protein, C terminal VT48_16190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_16190 SM00387 Histidine kinase-like ATPases VT48_16190 SM00388 His Kinase A (phosphoacceptor) domain VT48_16220 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_16230 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_16230 SM00245 tail specific protease VT48_16250 SM00382 ATPases associated with a variety of cellular activities VT48_16275 SM00937 VT48_16275 VT48_16280 SM00957 SecA DEAD-like domain VT48_16280 SM00958 SecA preprotein cross-linking domain VT48_16290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_16290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_16370 SM00487 DEAD-like helicases superfamily VT48_16370 SM00490 helicase superfamily c-terminal domain VT48_16380 SM00421 helix_turn_helix, Lux Regulon VT48_16380 SM00448 cheY-homologous receiver domain VT48_16385 SM00387 Histidine kinase-like ATPases VT48_16430 SM00984 UDP binding domain VT48_16455 SM00646 VT48_16455 VT48_16460 SM00646 VT48_16460 VT48_16490 SM00382 ATPases associated with a variety of cellular activities VT48_16530 SM00047 Lysozyme subfamily 2 VT48_16530 SM00287 Bacterial SH3 domain homologues VT48_16555 SM00342 helix_turn_helix, arabinose operon control protein VT48_16555 SM00448 cheY-homologous receiver domain VT48_16560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_16560 SM00387 Histidine kinase-like ATPases VT48_16585 SM00354 helix_turn _helix lactose operon repressor VT48_16640 SM00854 Bacterial capsule synthesis protein PGA_cap VT48_16670 SM00354 helix_turn _helix lactose operon repressor VT48_16685 SM00382 ATPases associated with a variety of cellular activities VT48_16700 SM00903 Flavin reductase like domain VT48_16720 SM00344 helix_turn_helix ASNC type VT48_16735 SM00984 UDP binding domain VT48_16745 SM00487 DEAD-like helicases superfamily VT48_16745 SM00490 helicase superfamily c-terminal domain VT48_16750 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VT48_16750 SM00091 PAS domain VT48_16780 SM00028 Tetratricopeptide repeats VT48_16805 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_16815 SM00014 Acid phosphatase homologues VT48_16825 SM00062 Bacterial periplasmic substrate-binding proteins VT48_16825 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VT48_16835 SM00382 ATPases associated with a variety of cellular activities VT48_16845 SM00938 Nitrogen regulatory protein P-II VT48_16870 SM00382 ATPases associated with a variety of cellular activities VT48_16895 SM00833 Cobalamin synthesis protein cobW C-terminal domain VT48_16905 SM00729 Elongator protein 3, MiaB family, Radical SAM VT48_16925 SM00327 von Willebrand factor (vWF) type A domain VT48_16930 SM00327 von Willebrand factor (vWF) type A domain VT48_16965 SM00382 ATPases associated with a variety of cellular activities VT48_17025 SM00226 Low molecular weight phosphatase family VT48_17060 SM00937 VT48_17060 VT48_17075 SM00919 Malic enzyme, NAD binding domain VT48_17075 SM01274 VT48_17075 VT48_17090 SM00357 Cold shock protein domain VT48_17090 SM00382 ATPases associated with a variety of cellular activities VT48_17090 SM00959 Rho termination factor, N-terminal domain VT48_17115 SM00448 cheY-homologous receiver domain VT48_17170 SM00155 Phospholipase D. Active site motifs. VT48_17195 SM00382 ATPases associated with a variety of cellular activities VT48_17200 SM00155 Phospholipase D. Active site motifs. VT48_17215 SM00836 DALR anticodon binding domain VT48_17215 SM01016 Arginyl tRNA synthetase N terminal dom VT48_17300 SM00062 Bacterial periplasmic substrate-binding proteins VT48_17310 SM00382 ATPases associated with a variety of cellular activities VT48_17320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VT48_17345 SM00028 Tetratricopeptide repeats VT48_17355 SM00860 SMI1 / KNR4 family VT48_17430 SM00344 helix_turn_helix ASNC type VT48_17500 SM00858 VT48_17500 VT48_17535 SM00835 Cupin VT48_17560 SM00986 Uracil DNA glycosylase superfamily VT48_17560 SM00987 UreE urease accessory protein, C-terminal domain VT48_17590 SM00640 Glycosyl hydrolases family 32 VT48_17600 SM01061 CAT RNA binding domain VT48_17680 SM00342 helix_turn_helix, arabinose operon control protein VT48_17720 SM00028 Tetratricopeptide repeats VT48_17780 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VT48_17790 SM00382 ATPases associated with a variety of cellular activities VT48_17800 SM00062 Bacterial periplasmic substrate-binding proteins VT48_17800 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VT48_17810 SM00954 Region found in RelA / SpoT proteins VT48_17820 SM00382 ATPases associated with a variety of cellular activities VT48_17830 SM00710 Parallel beta-helix repeats VT48_17885 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VT48_17905 SM00656 VT48_17905 VT48_17910 SM00382 ATPases associated with a variety of cellular activities VT48_17915 SM00382 ATPases associated with a variety of cellular activities VT48_17930 SM00382 ATPases associated with a variety of cellular activities VT48_17950 SM00382 ATPases associated with a variety of cellular activities VT48_17965 SM00725 NEAr Transporter domain VT48_17970 SM00725 NEAr Transporter domain VT48_17975 SM00725 NEAr Transporter domain VT48_18070 SM00870 VT48_18070 VT48_18075 SM00530 Helix-turn-helix XRE-family like proteins VT48_18080 SM00530 Helix-turn-helix XRE-family like proteins VT48_18155 SM01061 CAT RNA binding domain VT48_18165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_18175 SM00382 ATPases associated with a variety of cellular activities VT48_18225 SM00347 helix_turn_helix multiple antibiotic resistance protein VT48_18225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VT48_18230 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VT48_18240 SM01133 VT48_18240 VT48_18275 SM00421 helix_turn_helix, Lux Regulon VT48_18285 SM00422 helix_turn_helix, mercury resistance VT48_18295 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VT48_18295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VT48_18365 SM00354 helix_turn _helix lactose operon repressor VT48_18410 SM00382 ATPases associated with a variety of cellular activities VT48_18450 SM00382 ATPases associated with a variety of cellular activities VT48_18460 SM00028 Tetratricopeptide repeats VT48_18465 SM01061 CAT RNA binding domain VT48_18505 SM00530 Helix-turn-helix XRE-family like proteins VT48_18520 SM00354 helix_turn _helix lactose operon repressor VT48_18545 SM01061 CAT RNA binding domain VT48_18605 SM00345 helix_turn_helix gluconate operon transcriptional repressor VT48_18605 SM00866 VT48_18605 VT48_18660 SM00849 Metallo-beta-lactamase superfamily VT48_18715 SM00382 ATPases associated with a variety of cellular activities VT48_18735 SM00382 ATPases associated with a variety of cellular activities VT48_18745 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VT48_18750 SM00849 Metallo-beta-lactamase superfamily VT48_18765 SM00091 PAS domain VT48_18765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VT48_18765 SM00387 Histidine kinase-like ATPases VT48_18765 SM00388 His Kinase A (phosphoacceptor) domain VT48_18770 SM00448 cheY-homologous receiver domain VT48_18770 SM00862 Transcriptional regulatory protein, C terminal VT48_18810 SM00788 Adenylosuccinate synthetase VT48_18830 SM00382 ATPases associated with a variety of cellular activities VT48_18850 SM00342 helix_turn_helix, arabinose operon control protein VT48_18875 SM00267 diguanylate cyclase VT48_18885 SM01131 VT48_18885 VT48_18905 SM01060 VT48_18905 VT48_18930 SM00382 ATPases associated with a variety of cellular activities VT48_18980 SM00470 ParB-like nuclease domain VT48_18995 SM00470 ParB-like nuclease domain VT48_19005 SM01228 VT48_19005 VT48_19015 SM00393 Putative single-stranded nucleic acids-binding domain VT48_19015 SM01245 VT48_19015