locus-tag	class	description
JD965_00010	COG0592	DNA-directed DNA polymerase activity
JD965_00015	COG2501	S4 domain
JD965_00030	COG0187	DNA topoisomerase II activity
JD965_00035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JD965_00070	COG0516	GMP reductase activity
JD965_00070	COG0517	IMP dehydrogenase activity
JD965_00075	COG1686	Belongs to the peptidase S11 family
JD965_00095	COG1929	Belongs to the glycerate kinase type-1 family
JD965_00110	COG1428	Deoxynucleoside kinase
JD965_00115	COG1428	Deoxynucleoside kinase
JD965_00120	COG1388	LysM domain
JD965_00120	COG3858	chitin binding
JD965_00125	COG1335	isochorismatase
JD965_00130	COG0590	tRNA wobble adenosine to inosine editing
JD965_00140	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JD965_00145	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JD965_00195	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
JD965_00200	COG3853	Toxic anion resistance protein (TelA)
JD965_00205	COG1982	Orn Lys Arg decarboxylase major
JD965_00215	COG3870	Protein conserved in bacteria
JD965_00220	COG1728	Protein conserved in bacteria
JD965_00225	COG0470	DNA polymerase III
JD965_00230	COG1774	PSP1 C-terminal conserved region
JD965_00240	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JD965_00250	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JD965_00255	COG2002	toxin-antitoxin pair type II binding
JD965_00260	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JD965_00260	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JD965_00265	COG0084	hydrolase, TatD family'
JD965_00270	COG3583	domain protein
JD965_00270	COG3584	3D domain protein
JD965_00275	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JD965_00280	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JD965_00290	COG4466	Protein conserved in bacteria
JD965_00305	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JD965_00310	COG0251	oxidation-reduction process
JD965_00325	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JD965_00345	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JD965_00350	COG2002	toxin-antitoxin pair type II binding
JD965_00355	COG2244	polysaccharide biosynthetic process
JD965_00360	COG3956	TIGRFAM MazG family protein
JD965_00365	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JD965_00380	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JD965_00385	COG1098	S1 RNA binding domain
JD965_00400	COG2208	phosphoserine phosphatase activity
JD965_00405	COG2304	oxidoreductase activity
JD965_00410	COG0515	serine threonine protein kinase
JD965_00415	COG0037	tRNA processing
JD965_00420	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JD965_00425	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JD965_00440	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JD965_00445	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JD965_00450	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JD965_00455	COG0512	Glutamine amidotransferase of anthranilate synthase
JD965_00460	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JD965_00465	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JD965_00470	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JD965_00475	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JD965_00480	COG1396	sequence-specific DNA binding
JD965_00485	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JD965_00490	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JD965_00570	COG4463	regulation of RNA biosynthetic process
JD965_00575	COG3880	PFAM UvrB UvrC protein
JD965_00585	COG0542	response to heat
JD965_00590	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JD965_00595	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
JD965_00600	COG4956	integral membrane protein (PIN domain superfamily)
JD965_00620	COG1045	serine acetyltransferase
JD965_00630	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
JD965_00635	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JD965_00640	COG3688	RNA-binding protein containing a PIN domain
JD965_00645	COG1595	DNA-templated transcription, initiation
JD965_00655	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JD965_00660	COG0250	Participates in transcription elongation, termination and antitermination
JD965_00670	COG0081	regulation of translation
JD965_00685	COG2813	Specifically methylates the guanine in position
JD965_00700	COG1358	cellular component organization or biogenesis
JD965_00725	COG0596	Alpha beta hydrolase
JD965_00820	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JD965_00835	COG0201	protein transport
JD965_00845	COG0024	Methionine aminopeptidase
JD965_00855	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JD965_00880	COG1122	ATPase activity
JD965_00885	COG1122	ATPase activity
JD965_00890	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JD965_00910	COG2226	methyltransferase
JD965_00915	COG2318	DinB family
JD965_00925	COG0860	N-Acetylmuramoyl-L-alanine amidase
JD965_00930	COG0489	protein tyrosine kinase activity
JD965_00940	COG2194	sulfuric ester hydrolase activity
JD965_00945	COG0726	polysaccharide deacetylase
JD965_01005	COG0738	Major facilitator superfamily
JD965_01010	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JD965_01025	COG0659	secondary active sulfate transmembrane transporter activity
JD965_01030	COG0385	Bile acid
JD965_01035	COG2819	hydrolase of the alpha beta superfamily
JD965_01040	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_01045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_01050	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JD965_01060	COG3876	Protein conserved in bacteria
JD965_01065	COG1472	Belongs to the glycosyl hydrolase 3 family
JD965_01070	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JD965_01075	COG1263	PTS System
JD965_01075	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JD965_01085	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JD965_01090	COG1683	Conserved Protein
JD965_01120	COG1595	DNA-templated transcription, initiation
JD965_01125	COG5662	AntiSigma factor
JD965_01130	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JD965_01135	COG4856	YbbR-like protein
JD965_01180	COG0596	Alpha beta hydrolase
JD965_01190	COG0642	Histidine kinase
JD965_01195	COG0515	serine threonine protein kinase
JD965_01205	COG1113	amino acid transport
JD965_01210	COG1011	Hydrolase
JD965_01220	COG2197	response regulator
JD965_01225	COG1131	(ABC) transporter
JD965_01235	COG0842	Transport permease protein
JD965_01235	COG1511	domain protein
JD965_01265	COG0531	amino acid
JD965_01270	COG0584	glycerophosphoryl diester phosphodiesterase
JD965_01275	COG2271	Major facilitator Superfamily
JD965_01285	COG2368	4-hydroxyphenylacetate
JD965_01305	COG0371	Dehydrogenase
JD965_01315	COG1183	phosphatidylcholine synthase activity
JD965_01320	COG0586	Pfam SNARE associated Golgi protein
JD965_01325	COG0688	phosphatidylethanolamine metabolic process
JD965_01340	COG1301	dicarboxylic acid transport
JD965_01345	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JD965_01350	COG0833	amino acid
JD965_01355	COG2040	homocysteine
JD965_01360	COG1115	amino acid carrier protein
JD965_01365	COG2066	Belongs to the glutaminase family
JD965_01370	COG4191	Histidine kinase
JD965_01375	COG0784	Response regulator, receiver
JD965_01380	COG3173	Aminoglycoside phosphotransferase
JD965_01390	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JD965_01395	COG0778	Nitroreductase
JD965_01400	COG0346	lactoylglutathione lyase activity
JD965_01405	COG2259	Doxx family
JD965_01410	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_01420	COG3773	Cell wall hydrolase
JD965_01425	COG3540	Alkaline phosphatase
JD965_01430	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JD965_01435	COG0805	protein transport
JD965_01440	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
JD965_01445	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JD965_01450	COG0477	Major facilitator Superfamily
JD965_01455	COG1309	transcriptional regulator
JD965_01460	COG0252	asparaginase activity
JD965_01465	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JD965_01470	COG1405	negative regulation of cell septum assembly
JD965_01470	COG3012	SEC-C Motif Domain Protein
JD965_01475	COG0667	Aldo Keto reductase
JD965_01485	COG1595	DNA-templated transcription, initiation
JD965_01490	COG1595	DNA-templated transcription, initiation
JD965_01495	COG1876	peptidase activity
JD965_01500	COG0457	Tetratricopeptide repeat
JD965_01505	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_01510	COG0366	Alpha amylase catalytic
JD965_01515	COG0803	Belongs to the bacterial solute-binding protein 9 family
JD965_01520	COG1121	(ABC) transporter
JD965_01525	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JD965_01530	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JD965_01535	COG2310	stress, protein
JD965_01540	COG2310	stress, protein
JD965_01545	COG2310	stress, protein
JD965_01550	COG0861	Integral membrane protein TerC family
JD965_01560	COG3853	Toxic anion resistance protein (TelA)
JD965_01565	COG0477	Major facilitator Superfamily
JD965_01570	COG0517	IMP dehydrogenase activity
JD965_01570	COG4175	Glycine betaine
JD965_01575	COG4176	ABC-type proline glycine betaine transport system permease component
JD965_01580	COG2113	Glycine betaine
JD965_01585	COG1473	amidohydrolase
JD965_01590	COG1288	antiporter activity
JD965_01600	COG0366	Alpha amylase catalytic
JD965_01610	COG2814	Major facilitator Superfamily
JD965_01615	COG1846	Transcriptional regulator
JD965_01620	COG1280	lysine exporter protein (LysE YggA)
JD965_01625	COG3403	YqcI/YcgG family
JD965_01630	COG1113	amino acid transport
JD965_01635	COG3665	Urea carboxylase-associated protein
JD965_01645	COG1082	Xylose isomerase domain protein TIM barrel
JD965_01650	COG2271	Major facilitator Superfamily
JD965_01655	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JD965_01660	COG3458	cephalosporin-C deacetylase activity
JD965_01665	COG3541	Predicted nucleotidyltransferase
JD965_01670	COG0506	proline dehydrogenase activity
JD965_01675	COG1012	belongs to the aldehyde dehydrogenase family
JD965_01680	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JD965_01685	COG2508	Transcriptional regulator
JD965_01695	COG1587	Uroporphyrinogen-III synthase
JD965_01695	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JD965_01700	COG2146	nitrite reductase [NAD(P)H] activity
JD965_01705	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JD965_01710	COG0523	cobalamin synthesis protein
JD965_01715	COG1063	alcohol dehydrogenase
JD965_01720	COG1714	RDD family
JD965_01740	COG3209	COG3209 Rhs family protein
JD965_01745	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JD965_01750	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
JD965_01755	COG1733	regulation of RNA biosynthetic process
JD965_01760	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_01765	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_01770	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_01775	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
JD965_01795	COG2364	Membrane
JD965_01800	COG1126	abc transporter atp-binding protein
JD965_01805	COG0765	amino acid transport
JD965_01810	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JD965_01815	COG0583	DNA-binding transcription factor activity
JD965_01820	COG0163	prenyltransferase activity
JD965_01825	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JD965_01840	COG3104	oligopeptide transport
JD965_01855	COG0697	spore germination
JD965_01865	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JD965_01870	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JD965_01875	COG0456	acetyltransferase
JD965_01885	COG0765	amino acid transport
JD965_01890	COG1126	abc transporter atp-binding protein
JD965_01895	COG1473	amidohydrolase
JD965_01900	COG2079	MmgE PrpD family protein
JD965_01905	COG1136	(ABC) transporter
JD965_01910	COG0577	efflux transmembrane transporter activity
JD965_01915	COG0745	RESPONSE REGULATOR receiver
JD965_01920	COG5002	protein histidine kinase activity
JD965_01920	COG3850	Histidine kinase
JD965_01925	COG0457	Tetratricopeptide repeat
JD965_01940	COG0527	aspartate kinase activity
JD965_01945	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_01950	COG4605	iron ion homeostasis
JD965_01955	COG4604	ABC transporter, ATP-binding protein
JD965_01960	COG4607	ABC-type enterochelin transport system periplasmic component
JD965_01965	COG2814	Major facilitator Superfamily
JD965_01970	COG1309	transcriptional regulator
JD965_01975	COG0778	Nitroreductase
JD965_01980	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JD965_01985	COG0640	Transcriptional regulator
JD965_01990	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JD965_01995	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JD965_02000	COG1012	belongs to the aldehyde dehydrogenase family
JD965_02005	COG4975	Glucose uptake
JD965_02010	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_02015	COG4549	nuclear export factor GLE1
JD965_02020	COG1276	copper resistance
JD965_02020	COG2372	response to copper ion
JD965_02025	COG1349	DNA-binding transcription factor activity
JD965_02035	COG2213	PTS system mannitol-specific
JD965_02040	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JD965_02050	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JD965_02060	COG0561	phosphatase activity
JD965_02070	COG1914	H( )-stimulated, divalent metal cation uptake system
JD965_02080	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JD965_02085	COG1984	allophanate hydrolase subunit 2
JD965_02090	COG1414	Transcriptional regulator
JD965_02095	COG2755	lipolytic protein G-D-S-L family
JD965_02105	COG2329	Antibiotic biosynthesis monooxygenase
JD965_02110	COG0768	penicillin binding
JD965_02120	COG3711	transcriptional antiterminator
JD965_02125	COG0318	PFAM AMP-dependent synthetase and ligase
JD965_02130	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_02135	COG1917	Cupin 2, conserved barrel domain protein
JD965_02140	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JD965_02145	COG3871	stress protein (general stress protein 26)
JD965_02155	COG2814	Major facilitator Superfamily
JD965_02160	COG1522	sequence-specific DNA binding
JD965_02165	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JD965_02165	COG0551	DNA topoisomerase type I activity
JD965_02170	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JD965_02175	COG3706	GGDEF domain
JD965_02180	COG5298	Protein conserved in bacteria
JD965_02185	COG1215	transferase activity, transferring glycosyl groups
JD965_02195	COG0531	amino acid
JD965_02200	COG0494	nUDIX hydrolase
JD965_02205	COG0028	Belongs to the TPP enzyme family
JD965_02245	COG1914	H( )-stimulated, divalent metal cation uptake system
JD965_02255	COG4876	unkown
JD965_02265	COG2076	Multidrug Resistance protein
JD965_02270	COG2217	Heavy metal translocating P-type atpase
JD965_02275	COG3729	General stress protein
JD965_02280	COG0662	Cupin 2, conserved barrel domain protein
JD965_02285	COG2329	Antibiotic biosynthesis monooxygenase
JD965_02295	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JD965_02300	COG3290	protein histidine kinase activity
JD965_02305	COG4565	transcriptional regulatory protein
JD965_02310	COG1301	dicarboxylic acid transport
JD965_02315	COG0628	permease
JD965_02320	COG1131	(ABC) transporter
JD965_02325	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JD965_02335	COG1960	acyl-CoA dehydrogenase activity
JD965_02350	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JD965_02355	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_02365	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JD965_02370	COG0513	Belongs to the DEAD box helicase family
JD965_02375	COG3402	PFAM membrane-flanked domain
JD965_02380	COG3428	Bacterial PH domain
JD965_02385	COG0705	Rhomboid family
JD965_02395	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JD965_02400	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JD965_02405	COG0864	Transcriptional regulator
JD965_02410	COG2337	Toxic component of a toxin-antitoxin (TA) module
JD965_02415	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_02420	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_02425	COG2172	sigma factor antagonist activity
JD965_02430	COG2208	phosphoserine phosphatase activity
JD965_02435	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_02445	COG1191	sigma factor activity
JD965_02450	COG2208	phosphoserine phosphatase activity
JD965_02455	COG2183	response to ionizing radiation
JD965_02525	COG0697	spore germination
JD965_02550	COG1959	2 iron, 2 sulfur cluster binding
JD965_02570	COG2249	NAD(P)H dehydrogenase (quinone) activity
JD965_02600	COG0477	Major facilitator Superfamily
JD965_02610	COG1764	response to oxidative stress
JD965_02615	COG1846	Transcriptional regulator
JD965_02625	COG1959	2 iron, 2 sulfur cluster binding
JD965_02630	COG2910	NAD(P)H-binding
JD965_02640	COG1278	Cold shock
JD965_02645	COG1329	Transcriptional regulator
JD965_02650	COG2188	Transcriptional regulator
JD965_02655	COG1447	Phosphotransferase system cellobiose-specific component IIA
JD965_02665	COG2723	6-phospho-beta-galactosidase activity
JD965_02670	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JD965_02675	COG1940	carbohydrate kinase activity
JD965_02685	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JD965_02690	COG0531	amino acid
JD965_02695	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JD965_02700	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JD965_02715	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JD965_02720	COG1794	racemase activity, acting on amino acids and derivatives
JD965_02735	COG1846	Transcriptional regulator
JD965_02735	COG0456	acetyltransferase
JD965_02740	COG2271	Major facilitator Superfamily
JD965_02745	COG3621	Patatin-like phospholipase
JD965_02755	COG0662	Cupin 2, conserved barrel domain protein
JD965_02775	COG0277	FAD linked oxidase domain protein
JD965_02795	COG0662	Cupin 2, conserved barrel domain protein
JD965_02800	COG0456	acetyltransferase
JD965_02805	COG2318	DinB family
JD965_02825	COG0789	Transcriptional regulator
JD965_02835	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JD965_02850	COG3963	phosphatidate phosphatase activity
JD965_02860	COG5002	protein histidine kinase activity
JD965_02870	COG2814	Major facilitator Superfamily
JD965_02875	COG1309	transcriptional regulator
JD965_02885	COG5577	PFAM Coat F domain
JD965_02895	COG1063	alcohol dehydrogenase
JD965_02900	COG5577	PFAM Coat F domain
JD965_02910	COG4585	Histidine kinase
JD965_02915	COG2197	response regulator
JD965_02920	COG2409	Drug exporters of the RND superfamily
JD965_02925	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JD965_02930	COG0488	(ABC) transporter
JD965_02935	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JD965_02940	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JD965_02950	COG2814	Major facilitator Superfamily
JD965_02955	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JD965_02965	COG0730	response to heat
JD965_02970	COG0456	acetyltransferase
JD965_02975	COG1051	belongs to the nudix hydrolase family
JD965_02980	COG0596	Alpha beta hydrolase
JD965_02985	COG0473	3-isopropylmalate dehydrogenase activity
JD965_02990	COG1802	Transcriptional regulator
JD965_02995	COG1819	glycosyl
JD965_03010	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JD965_03020	COG1388	LysM domain
JD965_03025	COG2814	Major facilitator Superfamily
JD965_03030	COG2188	Transcriptional regulator
JD965_03035	COG2186	Transcriptional regulator
JD965_03040	COG2807	transmembrane transport
JD965_03045	COG2076	Multidrug Resistance protein
JD965_03050	COG2076	Multidrug Resistance protein
JD965_03055	COG1309	transcriptional regulator
JD965_03060	COG0531	amino acid
JD965_03070	COG3832	glyoxalase III activity
JD965_03075	COG0604	alcohol dehydrogenase
JD965_03080	COG2814	Major facilitator Superfamily
JD965_03120	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JD965_03125	COG0802	atpase or kinase
JD965_03135	COG0456	acetyltransferase
JD965_03140	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JD965_03145	COG0488	(ABC) transporter
JD965_03160	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JD965_03165	COG0805	protein transport
JD965_03175	COG1266	CAAX protease self-immunity
JD965_03195	COG2856	Zn peptidase
JD965_03210	COG1396	sequence-specific DNA binding
JD965_03280	COG3935	DnaD domain protein
JD965_03285	COG1484	DNA-dependent DNA replication
JD965_03295	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
JD965_03365	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
JD965_03380	COG2337	Toxic component of a toxin-antitoxin (TA) module
JD965_03390	COG4980	gas vesicle protein
JD965_03390	COG1674	ftsk spoiiie
JD965_03410	COG1802	Transcriptional regulator
JD965_03410	COG4626	Terminase
JD965_03470	COG5280	Phage tail tape measure protein TP901
JD965_03470	COG3953	SLT domain
JD965_03480	COG1705	Flagellar rod assembly protein muramidase FlgJ
JD965_03505	COG4824	toxin secretion phage lysis holin
JD965_03520	COG0156	8-amino-7-oxononanoate synthase activity
JD965_03540	COG3403	YqcI/YcgG family
JD965_03555	COG2814	Major facilitator Superfamily
JD965_03560	COG0457	Tetratricopeptide repeat
JD965_03565	COG1063	alcohol dehydrogenase
JD965_03570	COG2211	Major facilitator Superfamily
JD965_03575	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JD965_03585	COG1842	Phage shock protein A
JD965_03590	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JD965_03595	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JD965_03600	COG4260	virion core protein, lumpy skin disease virus
JD965_03610	COG2755	lipolytic protein G-D-S-L family
JD965_03610	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JD965_03620	COG1595	DNA-templated transcription, initiation
JD965_03625	COG1063	alcohol dehydrogenase
JD965_03630	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JD965_03635	COG0823	Involved in the tonB-independent uptake of proteins
JD965_03655	COG2132	Multicopper oxidase
JD965_03660	COG1113	amino acid transport
JD965_03665	COG0714	Associated with various cellular activities
JD965_03670	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
JD965_03675	COG1305	Transglutaminase-like
JD965_03685	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JD965_03705	COG2211	Major facilitator Superfamily
JD965_03725	COG2252	PERMEase
JD965_03730	COG3064	Membrane
JD965_03750	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JD965_03755	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JD965_03760	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JD965_03765	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JD965_03770	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JD965_03785	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JD965_03795	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JD965_03800	COG0138	bifunctional purine biosynthesis protein purh
JD965_03805	COG0151	Belongs to the GarS family
JD965_03815	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JD965_03820	COG1470	cell adhesion involved in biofilm formation
JD965_03825	COG4496	protein, YerC YecD
JD965_03830	COG0069	glutamate synthase activity
JD965_03840	COG0210	DNA helicase
JD965_03850	COG4851	CamS sex pheromone cAM373 precursor
JD965_03855	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JD965_03860	COG1285	pathogenesis
JD965_03870	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JD965_03890	COG1309	transcriptional regulator
JD965_03895	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JD965_03900	COG1597	lipid kinase activity
JD965_03905	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JD965_03910	COG1136	(ABC) transporter
JD965_03920	COG1131	(ABC) transporter
JD965_03950	COG3546	catalase activity
JD965_03965	COG2323	membrane
JD965_03975	COG2329	Antibiotic biosynthesis monooxygenase
JD965_03980	COG0346	lactoylglutathione lyase activity
JD965_03985	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_03990	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JD965_03995	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JD965_04000	COG4208	sulfate ABC transporter
JD965_04010	COG5583	Uncharacterized small protein (DUF2292)
JD965_04015	COG0196	riboflavin kinase activity
JD965_04020	COG0670	Belongs to the BI1 family
JD965_04025	COG1846	Transcriptional regulator
JD965_04030	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JD965_04040	COG2124	cytochrome p450
JD965_04040	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JD965_04055	COG1131	(ABC) transporter
JD965_04065	COG1368	sulfuric ester hydrolase activity
JD965_04070	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JD965_04075	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JD965_04080	COG1442	glycosyl transferase family 8
JD965_04085	COG1216	Glycosyl transferase, family 2
JD965_04090	COG1442	glycosyl transferase family 8
JD965_04095	COG2223	nitrite transmembrane transporter activity
JD965_04100	COG0531	amino acid
JD965_04105	COG1012	belongs to the aldehyde dehydrogenase family
JD965_04110	COG0840	transmembrane signaling receptor activity
JD965_04115	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_04155	COG0457	Tetratricopeptide repeat
JD965_04170	COG1695	Transcriptional regulator
JD965_04190	COG1136	(ABC) transporter
JD965_04190	COG0577	efflux transmembrane transporter activity
JD965_04215	COG0457	Tetratricopeptide repeat
JD965_04215	COG0463	Glycosyl transferase, family 2
JD965_04220	COG0488	(ABC) transporter
JD965_04225	COG0789	Transcriptional regulator
JD965_04230	COG2814	Major facilitator Superfamily
JD965_04235	COG0488	(ABC) transporter
JD965_04240	COG0513	Belongs to the DEAD box helicase family
JD965_04245	COG0456	acetyltransferase
JD965_04250	COG2130	NADP-dependent
JD965_04265	COG3866	Pectate lyase
JD965_04270	COG0471	metal ion transport
JD965_04290	COG3290	protein histidine kinase activity
JD965_04295	COG4565	transcriptional regulatory protein
JD965_04300	COG3181	Tripartite tricarboxylate transporter family receptor
JD965_04305	COG2851	Citrate transporter
JD965_04310	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JD965_04315	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
JD965_04325	COG2258	MOSC domain
JD965_04345	COG0024	Methionine aminopeptidase
JD965_04350	COG1263	PTS System
JD965_04350	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JD965_04360	COG1368	sulfuric ester hydrolase activity
JD965_04370	COG0071	Belongs to the small heat shock protein (HSP20) family
JD965_04385	COG0778	Nitroreductase
JD965_04400	COG0737	Belongs to the 5'-nucleotidase family
JD965_04405	COG0693	protein deglycase activity
JD965_04410	COG1609	Transcriptional regulator
JD965_04425	COG2814	Major facilitator Superfamily
JD965_04435	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JD965_04440	COG4980	gas vesicle protein
JD965_04445	COG1295	ribonuclease BN
JD965_04450	COG0477	Major facilitator Superfamily
JD965_04455	COG0387	Pfam Sodium calcium exchanger
JD965_04465	COG0668	transmembrane transport
JD965_04470	COG0535	radical SAM domain protein
JD965_04480	COG0726	polysaccharide deacetylase
JD965_04500	COG0745	RESPONSE REGULATOR receiver
JD965_04505	COG2205	protein histidine kinase activity
JD965_04510	COG2084	Dehydrogenase
JD965_04520	COG0598	Magnesium transport protein CorA
JD965_04525	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JD965_04530	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JD965_04540	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JD965_04545	COG4637	Psort location Cytoplasmic, score
JD965_04550	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JD965_04555	COG0022	dehydrogenase e1 component
JD965_04560	COG0508	dehydrogenase complex catalyzes the overall conversion of
JD965_04565	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JD965_04570	COG3284	Transcriptional regulator
JD965_04580	COG1486	melibiose metabolic process
JD965_04585	COG1737	Transcriptional regulator
JD965_04590	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JD965_04590	COG1263	PTS System
JD965_04595	COG5434	Belongs to the glycosyl hydrolase 28 family
JD965_04600	COG1132	(ABC) transporter
JD965_04605	COG1132	(ABC) transporter
JD965_04610	COG2259	Doxx family
JD965_04615	COG2514	catechol 2,3-dioxygenase activity
JD965_04625	COG1695	Transcriptional regulator
JD965_04630	COG2249	NAD(P)H dehydrogenase (quinone) activity
JD965_04635	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
JD965_04640	COG2732	(Barnase) inhibitor
JD965_04645	COG2318	DinB family
JD965_04650	COG2814	Major facilitator Superfamily
JD965_04655	COG1846	Transcriptional regulator
JD965_04660	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JD965_04660	COG0392	lysyltransferase activity
JD965_04670	COG0384	phenazine biosynthesis protein PhzF
JD965_04675	COG0778	Nitroreductase
JD965_04690	COG1090	epimerase
JD965_04705	COG2814	Major facilitator Superfamily
JD965_04720	COG3103	Sh3 type 3 domain protein
JD965_04725	COG5658	integral membrane protein
JD965_04730	COG0596	Alpha beta hydrolase
JD965_04735	COG0463	Glycosyl transferase, family 2
JD965_04740	COG4485	Bacterial membrane protein, YfhO
JD965_04745	COG1988	membrane-bound metal-dependent
JD965_04750	COG1194	a g-specific adenine glycosylase
JD965_04760	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_04780	COG1132	(ABC) transporter
JD965_04785	COG4129	membrane
JD965_04795	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JD965_04800	COG0735	belongs to the Fur family
JD965_04950	COG5577	PFAM Coat F domain
JD965_04955	COG3340	Belongs to the peptidase S51 family
JD965_04960	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JD965_04965	COG0277	FAD linked oxidase domain protein
JD965_04975	COG4166	transmembrane transport
JD965_04980	COG0601	transmembrane transport
JD965_04985	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JD965_04990	COG0444	Belongs to the ABC transporter superfamily
JD965_04995	COG4608	Belongs to the ABC transporter superfamily
JD965_05000	COG0753	catalase activity
JD965_05010	COG1116	anion transmembrane transporter activity
JD965_05015	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JD965_05020	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JD965_05045	COG1476	TRANSCRIPTIONal
JD965_05055	COG3382	B3 4 domain protein
JD965_05060	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JD965_05070	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JD965_05075	COG0789	Transcriptional regulator
JD965_05080	COG1664	Polymer-forming cytoskeletal
JD965_05085	COG1664	Polymer-forming cytoskeletal
JD965_05090	COG2766	serine protein kinase
JD965_05100	COG1846	Transcriptional regulator
JD965_05105	COG1566	PFAM secretion protein HlyD family protein
JD965_05110	COG2814	Major facilitator Superfamily
JD965_05115	COG0655	NAD(P)H dehydrogenase (quinone) activity
JD965_05130	COG1725	Transcriptional regulator
JD965_05135	COG1131	(ABC) transporter
JD965_05140	COG1131	(ABC) transporter
JD965_05145	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JD965_05150	COG1278	Cold shock
JD965_05160	COG3706	GGDEF domain
JD965_05165	COG1823	symporter activity
JD965_05185	COG5577	PFAM Coat F domain
JD965_05195	COG3764	Sortase (surface protein transpeptidase)
JD965_05200	COG0564	pseudouridine synthase activity
JD965_05210	COG0517	IMP dehydrogenase activity
JD965_05215	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JD965_05220	COG3153	acetyltransferase
JD965_05220	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JD965_05225	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JD965_05230	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JD965_05235	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JD965_05245	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JD965_05250	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JD965_05255	COG2203	Gaf domain
JD965_05255	COG4585	Histidine kinase
JD965_05260	COG2197	response regulator
JD965_05265	COG0431	NADPH-dependent FMN reductase
JD965_05280	COG1388	LysM domain
JD965_05280	COG0791	NLP P60 protein
JD965_05285	COG1959	2 iron, 2 sulfur cluster binding
JD965_05290	COG0668	transmembrane transport
JD965_05295	COG2719	SpoVR family
JD965_05300	COG1785	Belongs to the alkaline phosphatase family
JD965_05305	COG0791	NLP P60 protein
JD965_05305	COG1388	LysM domain
JD965_05310	COG0583	DNA-binding transcription factor activity
JD965_05315	COG0372	Belongs to the citrate synthase family
JD965_05320	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_05325	COG0531	amino acid
JD965_05330	COG0733	neurotransmitter:sodium symporter activity
JD965_05345	COG1595	DNA-templated transcription, initiation
JD965_05350	COG0204	Acyl-transferase
JD965_05355	COG1253	flavin adenine dinucleotide binding
JD965_05360	COG0789	Transcriptional regulator
JD965_05365	COG0436	Aminotransferase
JD965_05370	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JD965_05375	COG1253	flavin adenine dinucleotide binding
JD965_05380	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JD965_05385	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JD965_05390	COG0584	glycerophosphoryl diester phosphodiesterase
JD965_05400	COG0668	transmembrane transport
JD965_05405	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JD965_05410	COG0726	polysaccharide deacetylase
JD965_05415	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JD965_05420	COG3226	Transcriptional regulator
JD965_05430	COG0589	response to stress
JD965_05435	COG1132	(ABC) transporter
JD965_05440	COG1132	(ABC) transporter
JD965_05445	COG0702	epimerase
JD965_05460	COG0189	ligase activity
JD965_05465	COG0189	ligase activity
JD965_05480	COG4335	DNA alkylation repair
JD965_05485	COG0561	phosphatase activity
JD965_05490	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JD965_05500	COG0475	glutathione-regulated potassium exporter activity
JD965_05505	COG0490	domain, Protein
JD965_05515	COG1024	Enoyl-CoA hydratase
JD965_05525	COG4152	abc transporter atp-binding protein
JD965_05530	COG1668	transmembrane transport
JD965_05535	COG0420	3'-5' exonuclease activity
JD965_05540	COG4717	serine-type aminopeptidase activity
JD965_05555	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JD965_05590	COG4980	gas vesicle protein
JD965_05605	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JD965_05610	COG0537	adenosine 5'-monophosphoramidase activity
JD965_05615	COG1131	(ABC) transporter
JD965_05620	COG4473	ABC transporter
JD965_05630	COG1473	amidohydrolase
JD965_05635	COG3069	C4-dicarboxylate transmembrane transporter activity
JD965_05640	COG2329	Antibiotic biosynthesis monooxygenase
JD965_05645	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JD965_05655	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JD965_05660	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JD965_05665	COG1309	transcriptional regulator
JD965_05670	COG1511	domain protein
JD965_05675	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JD965_05685	COG1363	Peptidase, m42
JD965_05690	COG1301	dicarboxylic acid transport
JD965_05700	COG1234	tRNA 3'-trailer cleavage
JD965_05705	COG0095	Lipoate-protein ligase
JD965_05710	COG0702	epimerase
JD965_05715	COG0318	PFAM AMP-dependent synthetase and ligase
JD965_05725	COG0501	Belongs to the peptidase M48B family
JD965_05730	COG1404	Belongs to the peptidase S8 family
JD965_05735	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JD965_05740	COG0406	alpha-ribazole phosphatase activity
JD965_05745	COG0183	Belongs to the thiolase family
JD965_05750	COG0318	PFAM AMP-dependent synthetase and ligase
JD965_05755	COG1268	BioY protein
JD965_05760	COG0840	transmembrane signaling receptor activity
JD965_05765	COG0723	plastoquinol--plastocyanin reductase activity
JD965_05765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JD965_05770	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_05780	COG4903	ComK protein
JD965_05785	COG5646	InterPro IPR014922
JD965_05820	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JD965_05835	COG0398	Pfam SNARE associated Golgi protein
JD965_05840	COG0681	Belongs to the peptidase S26 family
JD965_05845	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JD965_05850	COG1846	Transcriptional regulator
JD965_05860	COG3180	Ammonia monooxygenase
JD965_05865	COG2814	Major facilitator Superfamily
JD965_05875	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
JD965_05880	COG2323	membrane
JD965_05895	COG0420	3'-5' exonuclease activity
JD965_05900	COG0419	ATPase involved in DNA repair
JD965_05905	COG1403	HNH endonuclease
JD965_05945	COG0179	Fumarylacetoacetate (FAA) hydrolase
JD965_05960	COG0367	asparagine synthase
JD965_05965	COG1562	ergosterol biosynthetic process
JD965_05970	COG0534	Mate efflux family protein
JD965_05975	COG1917	Cupin 2, conserved barrel domain protein
JD965_05975	COG2207	Transcriptional regulator
JD965_05980	COG2318	DinB family
JD965_05985	COG1279	arginine transmembrane transporter activity
JD965_05990	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JD965_05995	COG1357	PFAM Pentapeptide repeats (8 copies)
JD965_06000	COG2153	protein acetylation
JD965_06005	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JD965_06005	COG0646	methionine synthase
JD965_06015	COG2996	Protein conserved in bacteria
JD965_06025	COG1307	EDD domain protein, DegV family
JD965_06030	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JD965_06050	COG0561	phosphatase activity
JD965_06055	COG1073	alpha beta
JD965_06060	COG2151	metal-sulfur cluster biosynthetic enzyme
JD965_06070	COG0277	FAD linked oxidase domain protein
JD965_06075	COG2271	Major facilitator Superfamily
JD965_06085	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
JD965_06095	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JD965_06100	COG0505	Belongs to the CarA family
JD965_06105	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JD965_06110	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JD965_06130	COG2267	carboxylic ester hydrolase activity
JD965_06140	COG1744	ABC transporter substrate-binding protein PnrA-like
JD965_06155	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JD965_06160	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JD965_06165	COG5504	Zn-dependent protease
JD965_06170	COG0444	Belongs to the ABC transporter superfamily
JD965_06175	COG4608	Belongs to the ABC transporter superfamily
JD965_06185	COG0601	transmembrane transport
JD965_06190	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JD965_06200	COG0180	Tryptophanyl-tRNA synthetase
JD965_06205	COG4166	transmembrane transport
JD965_06210	COG0601	transmembrane transport
JD965_06215	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JD965_06220	COG0444	Belongs to the ABC transporter superfamily
JD965_06225	COG4608	Belongs to the ABC transporter superfamily
JD965_06235	COG0456	acetyltransferase
JD965_06240	COG1393	Belongs to the ArsC family
JD965_06250	COG0861	Integral membrane protein TerC family
JD965_06260	COG4862	establishment of competence for transformation
JD965_06265	COG4469	Competence protein
JD965_06270	COG1164	Oligoendopeptidase f
JD965_06280	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JD965_06285	COG2346	COG2346, Truncated hemoglobins
JD965_06290	COG0741	lytic transglycosylase activity
JD965_06295	COG4116	CYTH
JD965_06305	COG2357	RelA SpoT domain protein
JD965_06310	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JD965_06315	COG0564	pseudouridine synthase activity
JD965_06325	COG0475	glutathione-regulated potassium exporter activity
JD965_06325	COG0569	domain protein
JD965_06330	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JD965_06335	COG0352	thiamine-phosphate diphosphorylase activity
JD965_06340	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JD965_06345	COG2104	thiamine diphosphate biosynthetic process
JD965_06355	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JD965_06360	COG0351	phosphomethylpyrimidine kinase
JD965_06365	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JD965_06420	COG0210	DNA helicase
JD965_06440	COG1131	(ABC) transporter
JD965_06450	COG2153	protein acetylation
JD965_06460	COG2382	esterase
JD965_06465	COG0626	cystathionine gamma-synthase activity
JD965_06470	COG0626	cystathionine gamma-synthase activity
JD965_06605	COG2367	Beta-lactamase
JD965_06610	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JD965_06615	COG2814	Major facilitator Superfamily
JD965_06630	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
JD965_06635	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JD965_06640	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JD965_06645	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JD965_06645	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JD965_06650	COG1447	Phosphotransferase system cellobiose-specific component IIA
JD965_06655	COG2723	6-phospho-beta-galactosidase activity
JD965_06660	COG1349	DNA-binding transcription factor activity
JD965_06680	COG1285	pathogenesis
JD965_06690	COG2205	protein histidine kinase activity
JD965_06700	COG3383	formate dehydrogenase (NAD+) activity
JD965_06705	COG2427	Protein of unknown function (DUF1641)
JD965_06710	COG2124	cytochrome p450
JD965_06715	COG1819	glycosyl
JD965_06725	COG1587	Uroporphyrinogen-III synthase
JD965_06730	COG0390	transport system, permease component
JD965_06735	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JD965_06740	COG0697	spore germination
JD965_06755	COG1252	NADH dehydrogenase
JD965_06765	COG1609	Transcriptional regulator
JD965_06770	COG0745	RESPONSE REGULATOR receiver
JD965_06775	COG2205	protein histidine kinase activity
JD965_06775	COG2770	Histidine kinase
JD965_06785	COG0730	response to heat
JD965_06790	COG2318	DinB family
JD965_06795	COG0457	Tetratricopeptide repeat
JD965_06810	COG5632	N-Acetylmuramoyl-L-alanine amidase
JD965_06810	COG3409	Peptidoglycan-binding domain 1 protein
JD965_06810	COG1388	LysM domain
JD965_06820	COG4195	phage-related replication protein
JD965_06825	COG2856	Zn peptidase
JD965_06830	COG1396	sequence-specific DNA binding
JD965_06845	COG1484	DNA-dependent DNA replication
JD965_06865	COG1595	DNA-templated transcription, initiation
JD965_06870	COG5484	DNA packaging
JD965_06870	COG3728	DNA packaging
JD965_06875	COG1783	phage Terminase large subunit
JD965_06880	COG5518	Phage portal protein
JD965_06885	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JD965_06890	COG4653	Phage capsid family
JD965_06940	COG5412	phage tail tape measure protein
JD965_06940	COG5412	phage tail tape measure protein
JD965_06940	COG5412	phage tail tape measure protein
JD965_06940	COG3953	SLT domain
JD965_06940	COG3953	SLT domain
JD965_06940	COG3953	SLT domain
JD965_06945	COG1652	LysM domain
JD965_06950	COG4193	domain, Protein
JD965_06960	COG3628	GPW Gp25 family protein
JD965_06965	COG3299	homolog of phage Mu protein gp47
JD965_06970	COG3778	Protein conserved in bacteria
JD965_07010	COG5632	N-Acetylmuramoyl-L-alanine amidase
JD965_07010	COG3409	Peptidoglycan-binding domain 1 protein
JD965_07030	COG0306	phosphate transporter
JD965_07035	COG1392	Phosphate transport regulator
JD965_07040	COG0531	amino acid
JD965_07045	COG0346	lactoylglutathione lyase activity
JD965_07050	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JD965_07055	COG0463	Glycosyl transferase, family 2
JD965_07065	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JD965_07070	COG0477	Major facilitator Superfamily
JD965_07075	COG2362	D-Aminopeptidase
JD965_07080	COG0601	transmembrane transport
JD965_07085	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JD965_07090	COG0444	Belongs to the ABC transporter superfamily
JD965_07095	COG4166	transmembrane transport
JD965_07100	COG1619	proteins homologs of microcin C7 resistance protein MccF
JD965_07105	COG4948	Mandelate Racemase Muconate Lactonizing
JD965_07110	COG0791	NLP P60 protein
JD965_07115	COG4608	Belongs to the ABC transporter superfamily
JD965_07120	COG2706	6-phosphogluconolactonase activity
JD965_07125	COG1834	amidinotransferase
JD965_07130	COG1607	acyl-coa hydrolase
JD965_07135	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JD965_07140	COG2076	Multidrug Resistance protein
JD965_07145	COG2076	Multidrug Resistance protein
JD965_07150	COG0788	formyltetrahydrofolate deformylase activity
JD965_07155	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JD965_07165	COG1764	response to oxidative stress
JD965_07170	COG1846	Transcriptional regulator
JD965_07175	COG1764	response to oxidative stress
JD965_07190	COG0457	Tetratricopeptide repeat
JD965_07190	COG0463	Glycosyl transferase, family 2
JD965_07200	COG0590	tRNA wobble adenosine to inosine editing
JD965_07205	COG2814	Major facilitator Superfamily
JD965_07210	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JD965_07220	COG1404	Belongs to the peptidase S8 family
JD965_07225	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_07230	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JD965_07235	COG1122	ATPase activity
JD965_07240	COG4721	ABC-type cobalt transport system, permease component
JD965_07245	COG1388	LysM domain
JD965_07245	COG3858	chitin binding
JD965_07255	COG2239	Acts as a magnesium transporter
JD965_07260	COG0789	Transcriptional regulator
JD965_07275	COG1846	Transcriptional regulator
JD965_07280	COG0726	polysaccharide deacetylase
JD965_07285	COG3285	dna ligase
JD965_07285	COG1793	dna ligase
JD965_07290	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JD965_07295	COG5001	Diguanylate cyclase
JD965_07295	COG3300	MHYT domain
JD965_07300	COG0586	Pfam SNARE associated Golgi protein
JD965_07305	COG0861	Integral membrane protein TerC family
JD965_07310	COG1191	sigma factor activity
JD965_07335	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JD965_07340	COG2323	membrane
JD965_07350	COG3594	Acyltransferase
JD965_07355	COG5002	protein histidine kinase activity
JD965_07360	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JD965_07375	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JD965_07380	COG0436	Aminotransferase
JD965_07410	COG3852	Histidine kinase
JD965_07415	COG1846	Transcriptional regulator
JD965_07420	COG1360	Flagellar Motor Protein
JD965_07425	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JD965_07430	COG0542	response to heat
JD965_07435	COG3949	Membrane
JD965_07450	COG0720	synthase
JD965_07455	COG0602	queuosine metabolic process
JD965_07485	COG4873	Protein conserved in bacteria
JD965_07495	COG3773	Cell wall hydrolase
JD965_07500	COG2244	polysaccharide biosynthetic process
JD965_07505	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_07510	COG2217	Heavy metal translocating P-type atpase
JD965_07515	COG0006	proline dipeptidase activity
JD965_07520	COG1609	Transcriptional regulator
JD965_07525	COG3711	transcriptional antiterminator
JD965_07530	COG2190	(PTS) system
JD965_07530	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JD965_07530	COG1263	PTS System
JD965_07535	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JD965_07540	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JD965_07550	COG1533	DNA photolyase activity
JD965_07555	COG0840	transmembrane signaling receptor activity
JD965_07560	COG2084	Dehydrogenase
JD965_07570	COG2340	Cysteine-rich secretory protein family
JD965_07575	COG0768	penicillin binding
JD965_07585	COG0436	Aminotransferase
JD965_07595	COG0835	chemotaxis
JD965_07595	COG0784	Response regulator, receiver
JD965_07605	COG2814	Major facilitator Superfamily
JD965_07610	COG1376	ErfK ybiS ycfS ynhG family protein
JD965_07615	COG1408	metallophosphoesterase
JD965_07620	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_07630	COG2200	EAL domain
JD965_07635	COG4703	Protein of unknown function (DUF1797)
JD965_07640	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
JD965_07650	COG0517	IMP dehydrogenase activity
JD965_07655	COG0583	DNA-binding transcription factor activity
JD965_07660	COG0716	FMN binding
JD965_07670	COG0716	FMN binding
JD965_07695	COG0668	transmembrane transport
JD965_07700	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_07720	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JD965_07725	COG0303	'Molybdopterin
JD965_07730	COG1763	Mo-molybdopterin cofactor biosynthetic process
JD965_07735	COG0314	molybdopterin synthase activity
JD965_07740	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JD965_07750	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JD965_07755	COG1136	(ABC) transporter
JD965_07760	COG0577	efflux transmembrane transporter activity
JD965_07765	COG1349	DNA-binding transcription factor activity
JD965_07770	COG1105	Belongs to the carbohydrate kinase PfkB family
JD965_07775	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JD965_07775	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JD965_07775	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JD965_07780	COG0681	Belongs to the peptidase S26 family
JD965_07790	COG0488	(ABC) transporter
JD965_07795	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JD965_07800	COG2309	aminopeptidase activity
JD965_07810	COG1077	Cell shape determining protein MreB Mrl
JD965_07815	COG2002	toxin-antitoxin pair type II binding
JD965_07820	COG3852	Histidine kinase
JD965_07825	COG2105	PFAM AIG2 family protein
JD965_07825	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
JD965_07830	COG0569	domain protein
JD965_07840	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JD965_07850	COG0561	phosphatase activity
JD965_07860	COG0242	peptide deformylase activity
JD965_07870	COG0497	DNA recombination
JD965_07875	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JD965_07880	COG0022	dehydrogenase e1 component
JD965_07885	COG0508	dehydrogenase complex catalyzes the overall conversion of
JD965_07890	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JD965_07895	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_07910	COG1982	Orn Lys Arg decarboxylase major
JD965_07930	COG0483	inositol monophosphate 1-phosphatase activity
JD965_07940	COG3227	Zinc metalloprotease (Elastase)
JD965_07955	COG1595	DNA-templated transcription, initiation
JD965_07980	COG1217	gtp-binding protein TYPA
JD965_07990	COG4896	Protein conserved in bacteria
JD965_08000	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JD965_08005	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JD965_08010	COG2066	Belongs to the glutaminase family
JD965_08020	COG0772	Belongs to the SEDS family
JD965_08025	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JD965_08040	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JD965_08040	COG2010	Cytochrome c
JD965_08045	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JD965_08050	COG1845	cytochrome c oxidase, subunit III
JD965_08055	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JD965_08060	COG3336	cytochrome c oxidase
JD965_08075	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JD965_08080	COG2340	Cysteine-rich secretory protein family
JD965_08095	COG3679	Belongs to the UPF0342 family
JD965_08105	COG0742	ribosomal rna small subunit methyltransferase
JD965_08115	COG3314	Sporulation integral membrane protein YlbJ
JD965_08120	COG1752	Esterase of the alpha-beta hydrolase superfamily
JD965_08125	COG3480	Lon protease (S16) C-terminal proteolytic domain
JD965_08135	COG1399	metal-binding, possibly nucleic acid-binding protein
JD965_08155	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JD965_08175	COG4839	cell division protein FtsL
JD965_08180	COG0768	penicillin binding
JD965_08185	COG0768	penicillin binding
JD965_08205	COG0772	Belongs to the SEDS family
JD965_08220	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JD965_08225	COG0849	cell division
JD965_08230	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JD965_08235	COG1404	Belongs to the peptidase S8 family
JD965_08235	COG4412	M6 family metalloprotease domain protein
JD965_08245	COG1191	sigma factor activity
JD965_08250	COG1191	sigma factor activity
JD965_08255	COG1119	ATPase activity
JD965_08260	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JD965_08265	COG1873	PFAM PRC-barrel domain
JD965_08270	COG1496	oxidoreductase activity
JD965_08275	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JD965_08285	COG0762	integral membrane protein
JD965_08290	COG2302	S4 RNA-binding domain
JD965_08295	COG3599	regulation of cell shape
JD965_08300	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JD965_08305	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JD965_08315	COG0564	pseudouridine synthase activity
JD965_08325	COG2233	PERMEase
JD965_08335	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JD965_08340	COG0505	Belongs to the CarA family
JD965_08345	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JD965_08360	COG0284	orotidine-5'-phosphate decarboxylase activity
JD965_08365	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JD965_08375	COG0306	phosphate transporter
JD965_08390	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JD965_08395	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
JD965_08400	COG1648	precorrin-2 dehydrogenase activity
JD965_08410	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JD965_08415	COG1561	YicC-like family, N-terminal region
JD965_08425	COG0194	GDP metabolic process
JD965_08435	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JD965_08440	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JD965_08445	COG0242	peptide deformylase activity
JD965_08455	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JD965_08455	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JD965_08465	COG0631	protein serine/threonine phosphatase activity
JD965_08470	COG0515	serine threonine protein kinase
JD965_08470	COG2815	serine threonine protein kinase
JD965_08480	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JD965_08485	COG1564	THIamine pyrophosphokinase
JD965_08500	COG1302	Protein conserved in bacteria
JD965_08505	COG1461	Dihydroxyacetone kinase
JD965_08510	COG1760	l-serine dehydratase
JD965_08520	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JD965_08535	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JD965_08540	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_08555	COG1196	nuclear chromosome segregation
JD965_08560	COG0552	protein localization to endoplasmic reticulum
JD965_08575	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JD965_08585	COG1837	Belongs to the UPF0109 family
JD965_08610	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JD965_08625	COG2257	FlhB HrpN YscU SpaS Family
JD965_08635	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JD965_08640	COG0758	DNA mediated transformation
JD965_08645	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JD965_08655	COG4974	Belongs to the 'phage' integrase family
JD965_08675	COG1815	bacterial-type flagellum-dependent cell motility
JD965_08680	COG1558	bacterial-type flagellum-dependent cell motility
JD965_08685	COG1677	Flagellar hook-basal body complex protein FliE
JD965_08690	COG1766	The M ring may be actively involved in energy transduction
JD965_08695	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JD965_08700	COG1317	bacterial-type flagellum organization
JD965_08705	COG1157	protein secretion by the type III secretion system
JD965_08710	COG2882	bacterial-type flagellum organization
JD965_08715	COG3334	PFAM MgtE intracellular
JD965_08720	COG3144	bacterial-type flagellum assembly
JD965_08725	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JD965_08730	COG4786	Flagellar basal body rod
JD965_08735	COG1582	Flagellar protein (FlbD)
JD965_08740	COG1580	Controls the rotational direction of flagella during chemotaxis
JD965_08745	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JD965_08750	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JD965_08750	COG1776	CheC inhibitor of MCP methylation
JD965_08755	COG2201	protein-glutamate methylesterase activity
JD965_08760	COG3190	flagellar
JD965_08765	COG1338	Plays a role in the flagellum-specific transport system
JD965_08770	COG1987	bacterial-type flagellum assembly
JD965_08775	COG1684	flagellar biosynthetic protein fliR
JD965_08780	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JD965_08785	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JD965_08790	COG1419	protein localization to endoplasmic reticulum
JD965_08795	COG0455	bacterial-type flagellum organization
JD965_08800	COG2201	protein-glutamate methylesterase activity
JD965_08805	COG2198	Histidine kinase
JD965_08805	COG0643	Histidine kinase
JD965_08810	COG0835	chemotaxis
JD965_08815	COG1776	CheC inhibitor of MCP methylation
JD965_08825	COG1191	sigma factor activity
JD965_08855	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JD965_08860	COG4589	Belongs to the CDS family
JD965_08870	COG0750	zinc metalloprotease
JD965_08880	COG2176	DNA-directed DNA polymerase activity
JD965_08890	COG0195	Participates in both transcription termination and antitermination
JD965_08895	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JD965_08900	COG1358	cellular component organization or biogenesis
JD965_08910	COG1550	Protein conserved in bacteria
JD965_08925	COG0196	riboflavin kinase activity
JD965_08940	COG0726	polysaccharide deacetylase
JD965_08945	COG0612	Peptidase, M16
JD965_08950	COG1873	PFAM PRC-barrel domain
JD965_08955	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JD965_08960	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JD965_08965	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JD965_08970	COG0527	aspartate kinase activity
JD965_08980	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JD965_08985	COG0740	serine-type endopeptidase activity
JD965_08995	COG4980	gas vesicle protein
JD965_08995	COG1674	ftsk spoiiie
JD965_09000	COG2188	Transcriptional regulator
JD965_09005	COG2814	Major facilitator Superfamily
JD965_09010	COG1846	Transcriptional regulator
JD965_09015	COG2409	Drug exporters of the RND superfamily
JD965_09015	COG1033	growth of symbiont in host cell
JD965_09020	COG0612	Peptidase, M16
JD965_09025	COG0612	Peptidase, M16
JD965_09030	COG0300	oxidoreductase activity
JD965_09045	COG1426	Protein conserved in bacteria
JD965_09050	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JD965_09065	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JD965_09075	COG1692	metallophosphoesterase
JD965_09080	COG2359	stage V sporulation protein S
JD965_09105	COG4550	Control of competence regulator ComK, YlbF/YmcA
JD965_09155	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JD965_09160	COG3425	synthase
JD965_09165	COG1024	Enoyl-CoA hydratase
JD965_09170	COG1024	Enoyl-CoA hydratase
JD965_09175	COG0300	oxidoreductase activity
JD965_09175	COG0318	PFAM AMP-dependent synthetase and ligase
JD965_09175	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_09175	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_09175	COG3321	synthase
JD965_09180	COG0300	oxidoreductase activity
JD965_09180	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JD965_09180	COG3321	synthase
JD965_09180	COG4221	oxidoreductase activity
JD965_09185	COG3321	synthase
JD965_09185	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JD965_09185	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JD965_09185	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_09185	COG3321	synthase
JD965_09185	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_09185	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JD965_09185	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JD965_09185	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_09185	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_09190	COG4221	oxidoreductase activity
JD965_09190	COG3321	synthase
JD965_09190	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_09190	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_09195	COG3321	synthase
JD965_09195	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JD965_09195	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JD965_09195	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
JD965_09200	COG2124	cytochrome p450
JD965_09205	COG3209	COG3209 Rhs family protein
JD965_09210	COG3619	membrane
JD965_09220	COG1404	Belongs to the peptidase S8 family
JD965_09230	COG4195	phage-related replication protein
JD965_09235	COG1764	response to oxidative stress
JD965_09245	COG2076	Multidrug Resistance protein
JD965_09285	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JD965_09290	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JD965_09295	COG4112	unkown
JD965_09300	COG0860	N-Acetylmuramoyl-L-alanine amidase
JD965_09305	COG0464	growth
JD965_09310	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JD965_09315	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
JD965_09320	COG0789	Transcriptional regulator
JD965_09325	COG0174	glutamine synthetase
JD965_09335	COG2211	Major facilitator Superfamily
JD965_09340	COG3507	Belongs to the glycosyl hydrolase 43 family
JD965_09355	COG1070	Carbohydrate kinase
JD965_09360	COG0574	Belongs to the PEP-utilizing enzyme family
JD965_09360	COG3848	Pyruvate phosphate dikinase
JD965_09375	COG2378	regulation of single-species biofilm formation
JD965_09380	COG2318	DinB family
JD965_09385	COG1064	alcohol dehydrogenase
JD965_09390	COG4451	ribulose bisphosphate carboxylase, small
JD965_09390	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JD965_09410	COG0456	acetyltransferase
JD965_09445	COG3397	chitin binding
JD965_09455	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JD965_09465	COG5434	Belongs to the glycosyl hydrolase 28 family
JD965_09475	COG0756	dUTP diphosphatase activity
JD965_09480	COG4195	phage-related replication protein
JD965_09515	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JD965_09525	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JD965_09545	COG0785	Cytochrome C biogenesis protein
JD965_09550	COG2201	protein-glutamate methylesterase activity
JD965_09565	COG0071	Belongs to the small heat shock protein (HSP20) family
JD965_09580	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JD965_09585	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_09605	COG0824	Thioesterase
JD965_09615	COG4841	protein insertion into membrane
JD965_09625	COG1832	CoA-binding protein
JD965_09630	COG0187	DNA topoisomerase II activity
JD965_09635	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JD965_09645	COG1115	amino acid carrier protein
JD965_09680	COG3507	Belongs to the glycosyl hydrolase 43 family
JD965_09705	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_09710	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JD965_09715	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JD965_09720	COG2610	gluconate transmembrane transporter activity
JD965_09725	COG2124	cytochrome p450
JD965_09745	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JD965_09755	COG2246	polysaccharide biosynthetic process
JD965_09760	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JD965_09765	COG0586	Pfam SNARE associated Golgi protein
JD965_09770	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JD965_09775	COG1024	Enoyl-CoA hydratase
JD965_09780	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JD965_09785	COG0511	ligase activity, forming carbon-carbon bonds
JD965_09790	COG0439	Biotin carboxylase
JD965_09795	COG0318	PFAM AMP-dependent synthetase and ligase
JD965_09800	COG1960	acyl-CoA dehydrogenase activity
JD965_09805	COG1649	PFAM Uncharacterised BCR, COG1649
JD965_09815	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
JD965_09815	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_09830	COG2323	membrane
JD965_09835	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JD965_09845	COG2323	membrane
JD965_09860	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JD965_09905	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_09910	COG2027	D-alanyl-D-alanine carboxypeptidase
JD965_09915	COG2017	converts alpha-aldose to the beta-anomer
JD965_09920	COG0534	Mate efflux family protein
JD965_09935	COG0582	viral genome integration into host DNA
JD965_09940	COG0166	Belongs to the GPI family
JD965_09945	COG0405	Gamma-glutamyltransferase
JD965_09950	COG2814	Major facilitator Superfamily
JD965_09955	COG0640	Transcriptional regulator
JD965_09960	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JD965_09970	COG0604	alcohol dehydrogenase
JD965_09975	COG0493	'glutamate synthase
JD965_09980	COG0070	glutamate synthase
JD965_09980	COG0069	glutamate synthase activity
JD965_09980	COG0067	glutamate synthase
JD965_09985	COG0583	DNA-binding transcription factor activity
JD965_09990	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JD965_10005	COG0300	oxidoreductase activity
JD965_10010	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
JD965_10020	COG2814	Major facilitator Superfamily
JD965_10025	COG1070	Carbohydrate kinase
JD965_10030	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JD965_10070	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JD965_10075	COG0662	Cupin 2, conserved barrel domain protein
JD965_10075	COG2207	Transcriptional regulator
JD965_10080	COG1309	transcriptional regulator
JD965_10085	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JD965_10095	COG0640	Transcriptional regulator
JD965_10100	COG0741	lytic transglycosylase activity
JD965_10105	COG2322	membrane
JD965_10120	COG1619	proteins homologs of microcin C7 resistance protein MccF
JD965_10130	COG1388	LysM domain
JD965_10130	COG3584	3D domain protein
JD965_10135	COG0514	ATP-dependent DNA helicase (RecQ)
JD965_10145	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JD965_10150	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JD965_10165	COG0071	Belongs to the small heat shock protein (HSP20) family
JD965_10190	COG1012	belongs to the aldehyde dehydrogenase family
JD965_10195	COG1657	PFAM Prenyltransferase squalene oxidase
JD965_10200	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JD965_10205	COG0733	neurotransmitter:sodium symporter activity
JD965_10210	COG0385	Bile acid
JD965_10215	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JD965_10220	COG0508	dehydrogenase complex catalyzes the overall conversion of
JD965_10230	COG4548	von Willebrand factor, type A
JD965_10235	COG0714	Associated with various cellular activities
JD965_10240	COG2032	superoxide dismutase activity
JD965_10245	COG1388	LysM domain
JD965_10245	COG0791	NLP P60 protein
JD965_10250	COG1819	glycosyl
JD965_10255	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JD965_10260	COG0534	Mate efflux family protein
JD965_10265	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_10270	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JD965_10275	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JD965_10285	COG2962	Rard protein
JD965_10300	COG1942	4-Oxalocrotonate Tautomerase
JD965_10310	COG1733	regulation of RNA biosynthetic process
JD965_10315	COG0778	Nitroreductase
JD965_10320	COG0400	carboxylic ester hydrolase activity
JD965_10325	COG0346	lactoylglutathione lyase activity
JD965_10335	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JD965_10345	COG2723	6-phospho-beta-galactosidase activity
JD965_10350	COG2188	Transcriptional regulator
JD965_10355	COG3409	Peptidoglycan-binding domain 1 protein
JD965_10355	COG0793	Belongs to the peptidase S41A family
JD965_10360	COG2226	methyltransferase
JD965_10370	COG1876	peptidase activity
JD965_10390	COG0671	phosphoesterase, PA-phosphatase related
JD965_10420	COG1509	lysine 2,3-aminomutase activity
JD965_10425	COG0456	acetyltransferase
JD965_10430	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JD965_10435	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JD965_10440	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JD965_10445	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JD965_10450	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
JD965_10460	COG0456	acetyltransferase
JD965_10465	COG0463	Glycosyl transferase, family 2
JD965_10480	COG4641	Protein conserved in bacteria
JD965_10490	COG1086	Polysaccharide biosynthesis protein
JD965_10520	COG1357	PFAM Pentapeptide repeats (8 copies)
JD965_10535	COG0477	Major facilitator Superfamily
JD965_10570	COG0457	Tetratricopeptide repeat
JD965_10580	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JD965_10585	COG0583	DNA-binding transcription factor activity
JD965_10610	COG0457	Tetratricopeptide repeat
JD965_10615	COG4282	regulation of fungal-type cell wall biogenesis
JD965_10620	COG1525	nuclease
JD965_10635	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JD965_10655	COG1846	Transcriptional regulator
JD965_10660	COG4698	Protein conserved in bacteria
JD965_10665	COG2755	lipolytic protein G-D-S-L family
JD965_10670	COG1999	signal sequence binding
JD965_10680	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JD965_10685	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JD965_10690	COG1272	protein, Hemolysin III
JD965_10695	COG0204	Acyl-transferase
JD965_10700	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JD965_10715	COG2521	methyltransferase
JD965_10715	COG2136	Putative SAM-dependent methyltransferase
JD965_10730	COG1413	lyase activity
JD965_10740	COG0386	Belongs to the glutathione peroxidase family
JD965_10750	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JD965_10765	COG1278	Cold shock
JD965_10785	COG0328	RNA-DNA hybrid ribonuclease activity
JD965_10790	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JD965_10795	COG0328	RNA-DNA hybrid ribonuclease activity
JD965_10805	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JD965_10820	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JD965_10830	COG1755	Isoprenylcysteine carboxyl methyltransferase
JD965_10835	COG3424	synthase
JD965_10860	COG1335	isochorismatase
JD965_10870	COG2233	PERMEase
JD965_10880	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JD965_10885	COG1199	ATP-dependent helicase activity
JD965_10900	COG0116	Belongs to the methyltransferase superfamily
JD965_10930	COG3359	exonuclease
JD965_10935	COG1205	dead DEAH box helicase
JD965_10935	COG1111	helicase
JD965_10940	COG2190	(PTS) system
JD965_10945	COG0071	Belongs to the small heat shock protein (HSP20) family
JD965_10985	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JD965_10985	COG4499	WXG100 protein secretion system (Wss), protein YukC
JD965_10995	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JD965_11000	COG3935	DnaD domain protein
JD965_11010	COG0436	Aminotransferase
JD965_11015	COG5353	protein conserved in bacteria
JD965_11025	COG1199	ATP-dependent helicase activity
JD965_11025	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JD965_11045	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JD965_11045	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JD965_11055	COG0438	transferase activity, transferring glycosyl groups
JD965_11060	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JD965_11075	COG1694	Mazg nucleotide pyrophosphohydrolase
JD965_11080	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JD965_11085	COG2140	Oxalate decarboxylase
JD965_11095	COG4347	Protein of unknown function (DUF1405)
JD965_11100	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JD965_11100	COG2010	Cytochrome c
JD965_11105	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JD965_11110	COG0723	plastoquinol--plastocyanin reductase activity
JD965_11125	COG0457	Tetratricopeptide repeat
JD965_11135	COG0287	Prephenate dehydrogenase
JD965_11170	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JD965_11175	COG4401	Chorismate mutase type I
JD965_11190	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JD965_11195	COG0105	UTP biosynthetic process
JD965_11200	COG0142	geranyltranstransferase activity
JD965_11210	COG0142	geranyltranstransferase activity
JD965_11225	COG0776	regulation of translation
JD965_11230	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JD965_11270	COG0539	negative regulation of cytoplasmic translation
JD965_11285	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
JD965_11290	COG2959	enzyme of heme biosynthesis
JD965_11295	COG3773	Cell wall hydrolase
JD965_11295	COG3409	Peptidoglycan-binding domain 1 protein
JD965_11300	COG2339	peptidase activity
JD965_11305	COG0492	ferredoxin-NADP+ reductase activity
JD965_11310	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JD965_11315	COG4862	establishment of competence for transformation
JD965_11320	COG1408	metallophosphoesterase
JD965_11330	COG1388	LysM domain
JD965_11335	COG1266	CAAX protease self-immunity
JD965_11340	COG0514	ATP-dependent DNA helicase (RecQ)
JD965_11345	COG4955	Helix-turn-helix domain
JD965_11350	COG1141	Ferredoxin
JD965_11355	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JD965_11360	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JD965_11370	COG1595	DNA-templated transcription, initiation
JD965_11375	COG5002	protein histidine kinase activity
JD965_11380	COG0745	RESPONSE REGULATOR receiver
JD965_11385	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JD965_11390	COG1333	cytochrome c biogenesis protein
JD965_11395	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_11400	COG1187	pseudouridine synthase activity
JD965_11405	COG0700	Nucleoside recognition
JD965_11410	COG2715	membrane protein required for spore maturation
JD965_11415	COG1686	Belongs to the peptidase S11 family
JD965_11440	COG1547	Domain of unknown function (DUF309)
JD965_11445	COG0456	acetyltransferase
JD965_11460	COG0307	riboflavin synthase, alpha
JD965_11465	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JD965_11465	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JD965_11475	COG0681	Belongs to the peptidase S26 family
JD965_11485	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JD965_11490	COG4086	secreted protein
JD965_11495	COG0019	diaminopimelate decarboxylase activity
JD965_11500	COG0697	spore germination
JD965_11515	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JD965_11535	COG1191	sigma factor activity
JD965_11545	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_11550	COG1686	Belongs to the peptidase S11 family
JD965_11555	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JD965_11560	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JD965_11565	COG4974	Belongs to the 'phage' integrase family
JD965_11575	COG0735	belongs to the Fur family
JD965_11580	COG1300	Membrane
JD965_11590	COG0281	malic enzyme
JD965_11595	COG1757	Na H antiporter
JD965_11600	COG1027	Aspartate ammonia-lyase
JD965_11605	COG0252	asparaginase activity
JD965_11610	COG1396	sequence-specific DNA binding
JD965_11615	COG1379	DNA repair
JD965_11620	COG0494	nUDIX hydrolase
JD965_11630	COG0667	Aldo Keto reductase
JD965_11640	COG1073	alpha beta
JD965_11650	COG4918	Iron-sulphur cluster biosynthesis
JD965_11655	COG0456	acetyltransferase
JD965_11655	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JD965_11660	COG2329	Antibiotic biosynthesis monooxygenase
JD965_11665	COG0456	acetyltransferase
JD965_11670	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JD965_11685	COG0628	permease
JD965_11695	COG0346	lactoylglutathione lyase activity
JD965_11705	COG3048	D-serine ammonia-lyase activity
JD965_11710	COG0300	oxidoreductase activity
JD965_11715	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JD965_11720	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JD965_11730	COG0596	Alpha beta hydrolase
JD965_11745	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JD965_11750	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JD965_11765	COG0706	membrane insertase activity
JD965_11790	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JD965_11795	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_11800	COG2986	histidine ammonia-lyase
JD965_11805	COG0318	PFAM AMP-dependent synthetase and ligase
JD965_11810	COG0109	protoheme IX farnesyltransferase activity
JD965_11815	COG2195	Cleaves the N-terminal amino acid of tripeptides
JD965_11820	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JD965_11825	COG0346	lactoylglutathione lyase activity
JD965_11835	COG1376	ErfK ybiS ycfS ynhG family protein
JD965_11840	COG4129	membrane
JD965_11845	COG1126	abc transporter atp-binding protein
JD965_11850	COG0765	amino acid transport
JD965_11855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JD965_11865	COG1597	lipid kinase activity
JD965_11870	COG0508	dehydrogenase complex catalyzes the overall conversion of
JD965_11875	COG0022	dehydrogenase e1 component
JD965_11880	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JD965_11885	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JD965_11890	COG3426	butyrate kinase activity
JD965_11895	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JD965_11900	COG0280	phosphate acetyltransferase
JD965_11905	COG3829	transcription factor binding
JD965_11905	COG3290	protein histidine kinase activity
JD965_11915	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JD965_11920	COG2079	MmgE PrpD family protein
JD965_11925	COG0372	Belongs to the citrate synthase family
JD965_11930	COG1960	acyl-CoA dehydrogenase activity
JD965_11935	COG1250	3-hydroxyacyl-CoA dehydrogenase
JD965_11940	COG0183	Belongs to the thiolase family
JD965_11945	COG0584	glycerophosphoryl diester phosphodiesterase
JD965_11950	COG0860	N-Acetylmuramoyl-L-alanine amidase
JD965_11975	COG1902	pentaerythritol trinitrate reductase activity
JD965_11990	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JD965_11995	COG0745	RESPONSE REGULATOR receiver
JD965_12000	COG0750	zinc metalloprotease
JD965_12005	COG0497	DNA recombination
JD965_12015	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JD965_12025	COG0142	geranyltranstransferase activity
JD965_12035	COG1570	exodeoxyribonuclease VII activity
JD965_12050	COG1302	Protein conserved in bacteria
JD965_12055	COG0439	Biotin carboxylase
JD965_12060	COG0511	ligase activity, forming carbon-carbon bonds
JD965_12100	COG3854	ATPases associated with a variety of cellular activities
JD965_12115	COG0006	proline dipeptidase activity
JD965_12125	COG3872	metal-dependent enzyme
JD965_12135	COG1752	Esterase of the alpha-beta hydrolase superfamily
JD965_12150	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JD965_12170	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JD965_12185	COG1396	sequence-specific DNA binding
JD965_12195	COG0681	Belongs to the peptidase S26 family
JD965_12220	COG4940	Competence protein ComGF
JD965_12230	COG4970	Tfp pilus assembly protein FimT
JD965_12235	COG4537	Required for transformation and DNA binding
JD965_12240	COG1459	type II secretion system
JD965_12245	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JD965_12250	COG0598	Magnesium transport protein CorA
JD965_12255	COG1253	flavin adenine dinucleotide binding
JD965_12260	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_12270	COG1393	Belongs to the ArsC family
JD965_12280	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JD965_12290	COG0011	TIGRFAM Protein of
JD965_12300	COG2866	Carboxypeptidase
JD965_12305	COG1940	carbohydrate kinase activity
JD965_12310	COG4483	Protein conserved in bacteria
JD965_12315	COG1757	Na H antiporter
JD965_12330	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JD965_12345	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JD965_12350	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JD965_12355	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JD965_12360	COG0581	inorganic phosphate transmembrane transporter activity
JD965_12365	COG0573	inorganic phosphate transmembrane transporter activity
JD965_12370	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JD965_12375	COG0768	penicillin binding
JD965_12380	COG0477	Major facilitator Superfamily
JD965_12385	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JD965_12390	COG2839	Protein conserved in bacteria
JD965_12395	COG5521	maltodextrose utilization protein MalA
JD965_12400	COG1388	LysM domain
JD965_12410	COG4709	membrane
JD965_12415	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
JD965_12425	COG0735	belongs to the Fur family
JD965_12430	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JD965_12445	COG0513	Belongs to the DEAD box helicase family
JD965_12460	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JD965_12465	COG2384	SAM-dependent methyltransferase
JD965_12470	COG2010	Cytochrome c
JD965_12475	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JD965_12480	COG0358	DNA primase activity
JD965_12495	COG0517	IMP dehydrogenase activity
JD965_12500	COG0751	glycine-tRNA ligase activity
JD965_12520	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JD965_12525	COG0295	cytidine deaminase activity
JD965_12530	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JD965_12540	COG1480	7TM receptor with intracellular HD hydrolase
JD965_12545	COG1702	phosphate starvation-inducible protein PhoH
JD965_12550	COG0561	phosphatase activity
JD965_12565	COG4864	UPF0365 protein
JD965_12570	COG1030	water channel activity
JD965_12575	COG1610	YqeY-like protein
JD965_12585	COG1283	sodium-dependent phosphate transmembrane transporter activity
JD965_12590	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JD965_12595	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JD965_12625	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JD965_12640	COG0860	N-Acetylmuramoyl-L-alanine amidase
JD965_12655	COG1466	dna polymerase III delta subunit
JD965_12670	COG0658	competence protein
JD965_12670	COG2333	competence protein COMEC
JD965_12675	COG2131	deaminase
JD965_12680	COG1555	photosystem II stabilization
JD965_12680	COG1596	polysaccharide export
JD965_12685	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JD965_12690	COG2226	methyltransferase
JD965_12695	COG0799	negative regulation of ribosome biogenesis
JD965_12700	COG1713	HD superfamily hydrolase involved in NAD metabolism
JD965_12710	COG1534	Rna-binding protein
JD965_12715	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JD965_12720	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JD965_12725	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JD965_12735	COG2755	lipolytic protein G-D-S-L family
JD965_12745	COG5632	N-Acetylmuramoyl-L-alanine amidase
JD965_12745	COG3409	Peptidoglycan-binding domain 1 protein
JD965_12750	COG0398	Pfam SNARE associated Golgi protein
JD965_12770	COG1733	regulation of RNA biosynthetic process
JD965_12775	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JD965_12790	COG0583	DNA-binding transcription factor activity
JD965_12800	COG0656	L-ascorbic acid biosynthetic process
JD965_12830	COG0563	adenylate kinase activity
JD965_12840	COG2814	Major facilitator Superfamily
JD965_12855	COG2318	DinB family
JD965_12865	COG0561	phosphatase activity
JD965_12870	COG0561	phosphatase activity
JD965_12885	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JD965_12890	COG2814	Major facilitator Superfamily
JD965_12895	COG2124	cytochrome p450
JD965_12895	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JD965_12900	COG1309	transcriptional regulator
JD965_12905	COG2226	methyltransferase
JD965_12920	COG2116	formate transmembrane transporter activity
JD965_12925	COG5609	conserved protein (DUF2294)
JD965_12930	COG3383	formate dehydrogenase (NAD+) activity
JD965_12935	COG2427	Protein of unknown function (DUF1641)
JD965_12945	COG0626	cystathionine gamma-synthase activity
JD965_12950	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JD965_12975	COG0768	penicillin binding
JD965_12990	COG0826	peptidase U32
JD965_12995	COG0826	peptidase U32
JD965_13000	COG4122	O-methyltransferase activity
JD965_13005	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JD965_13020	COG4472	Bacterial protein of unknown function (DUF965)
JD965_13030	COG0628	permease
JD965_13035	COG1126	abc transporter atp-binding protein
JD965_13040	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JD965_13045	COG0765	amino acid transport
JD965_13050	COG0765	amino acid transport
JD965_13070	COG3881	PFAM PRC-barrel domain
JD965_13075	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JD965_13080	COG0457	Tetratricopeptide repeat
JD965_13090	COG1104	cysteine desulfurase activity
JD965_13095	COG1959	2 iron, 2 sulfur cluster binding
JD965_13100	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JD965_13105	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JD965_13130	COG4991	sh3 domain protein
JD965_13130	COG0860	N-Acetylmuramoyl-L-alanine amidase
JD965_13130	COG3103	Sh3 type 3 domain protein
JD965_13135	COG1490	D-aminoacyl-tRNA deacylase activity
JD965_13140	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JD965_13150	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JD965_13150	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JD965_13155	COG5416	Lipopolysaccharide assembly protein A domain
JD965_13160	COG0490	domain, Protein
JD965_13165	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JD965_13165	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JD965_13175	COG2244	polysaccharide biosynthetic process
JD965_13180	COG2323	membrane
JD965_13195	COG1862	Preprotein translocase
JD965_13235	COG1388	LysM domain
JD965_13245	COG0157	Belongs to the NadC ModD family
JD965_13250	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JD965_13255	COG1104	cysteine desulfurase activity
JD965_13260	COG1827	regulation of RNA biosynthetic process
JD965_13265	COG0077	Prephenate dehydratase
JD965_13280	COG3290	protein histidine kinase activity
JD965_13285	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JD965_13290	COG2868	ribosomal protein
JD965_13300	COG1994	Peptidase M50
JD965_13305	COG0739	heme binding
JD965_13310	COG2894	cell division
JD965_13320	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JD965_13330	COG1077	Cell shape determining protein MreB Mrl
JD965_13345	COG0457	Tetratricopeptide repeat
JD965_13450	COG0740	serine-type endopeptidase activity
JD965_13570	COG1396	sequence-specific DNA binding
JD965_13600	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JD965_13605	COG0285	dihydrofolate synthase activity
JD965_13610	COG0525	valine-tRNA ligase activity
JD965_13620	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JD965_13625	COG1388	LysM domain
JD965_13635	COG0113	porphobilinogen synthase activity
JD965_13640	COG1587	Uroporphyrinogen-III synthase
JD965_13650	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JD965_13670	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JD965_13675	COG0470	DNA polymerase III
JD965_13675	COG1067	ATP-dependent peptidase activity
JD965_13690	COG1477	protein flavinylation
JD965_13690	COG0457	Tetratricopeptide repeat
JD965_13705	COG0473	3-isopropylmalate dehydrogenase activity
JD965_13720	COG0440	acetolactate synthase activity
JD965_13725	COG0028	Belongs to the TPP enzyme family
JD965_13755	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
JD965_13770	COG0622	Phosphoesterase
JD965_13775	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JD965_13785	COG5401	PFAM Sporulation and spore germination
JD965_13795	COG1846	Transcriptional regulator
JD965_13800	COG2197	response regulator
JD965_13805	COG0824	Thioesterase
JD965_13810	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JD965_13815	COG1053	succinate dehydrogenase
JD965_13820	COG2009	succinate dehydrogenase
JD965_13825	COG1719	4-vinyl reductase, 4VR
JD965_13830	COG0527	aspartate kinase activity
JD965_13840	COG3118	belongs to the thioredoxin family
JD965_13845	COG3534	alpha-L-arabinofuranosidase
JD965_13850	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JD965_13855	COG2086	electron transfer activity
JD965_13860	COG1024	Enoyl-CoA hydratase
JD965_13865	COG1309	transcriptional regulator
JD965_13870	COG0318	PFAM AMP-dependent synthetase and ligase
JD965_13880	COG3766	membrane
JD965_13890	COG1796	DNA polymerase
JD965_13890	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JD965_13895	COG1286	toxin biosynthetic process
JD965_13910	COG0072	phenylalanine-tRNA ligase activity
JD965_13910	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JD965_13915	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JD965_13920	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JD965_13930	COG3835	regulator
JD965_13935	COG0277	FAD linked oxidase domain protein
JD965_13940	COG0247	lactate metabolic process
JD965_13945	COG1966	Carbon starvation protein
JD965_13950	COG3534	alpha-L-arabinofuranosidase
JD965_13955	COG0395	ABC-type sugar transport system, permease component
JD965_13965	COG1653	transport
JD965_13975	COG0647	UMP catabolic process
JD965_13980	COG0235	Class ii aldolase
JD965_13985	COG1069	ribulokinase activity
JD965_13990	COG2160	L-arabinose isomerase activity
JD965_13995	COG3507	Belongs to the glycosyl hydrolase 43 family
JD965_14000	COG1363	Peptidase, m42
JD965_14010	COG3326	Membrane
JD965_14025	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JD965_14030	COG1346	cytolysis
JD965_14035	COG1380	Effector of murein hydrolase LrgA
JD965_14040	COG3279	Response regulator of the LytR AlgR family
JD965_14045	COG3275	phosphorelay sensor kinase activity
JD965_14050	COG1011	Hydrolase
JD965_14065	COG0398	Pfam SNARE associated Golgi protein
JD965_14070	COG1484	DNA-dependent DNA replication
JD965_14075	COG3611	Membrane attachment protein
JD965_14090	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JD965_14095	COG1733	regulation of RNA biosynthetic process
JD965_14100	COG2814	Major facilitator Superfamily
JD965_14105	COG0656	L-ascorbic acid biosynthetic process
JD965_14110	COG0237	dephospho-CoA kinase activity
JD965_14115	COG1971	Probably functions as a manganese efflux pump
JD965_14120	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JD965_14125	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JD965_14125	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JD965_14130	COG5002	protein histidine kinase activity
JD965_14135	COG0745	RESPONSE REGULATOR receiver
JD965_14145	COG0538	isocitrate dehydrogenase activity
JD965_14150	COG0372	Belongs to the citrate synthase family
JD965_14185	COG0628	permease
JD965_14190	COG3030	protein affecting phage T7 exclusion by the F plasmid
JD965_14195	COG0469	pyruvate kinase activity
JD965_14215	COG0281	malic enzyme
JD965_14220	COG0587	DNA-directed DNA polymerase activity
JD965_14240	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JD965_14250	COG4109	DRTGG domain
JD965_14260	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_14275	COG0521	Mo-molybdopterin cofactor biosynthetic process
JD965_14290	COG0827	DNA restriction-modification system
JD965_14295	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JD965_14300	COG3874	Sporulation protein YtfJ
JD965_14310	COG1714	RDD family
JD965_14315	COG0616	signal peptide processing
JD965_14320	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JD965_14325	COG1574	metal-dependent hydrolase with the TIM-barrel fold
JD965_14330	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JD965_14345	COG1104	cysteine desulfurase activity
JD965_14350	COG1114	Component of the transport system for branched-chain amino acids
JD965_14360	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JD965_14365	COG1309	transcriptional regulator
JD965_14370	COG1956	GAF domain-containing protein
JD965_14375	COG2203	Gaf domain
JD965_14375	COG2199	diguanylate cyclase activity
JD965_14390	COG4282	regulation of fungal-type cell wall biogenesis
JD965_14420	COG0693	protein deglycase activity
JD965_14435	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JD965_14440	COG1378	Sugar-specific transcriptional regulator TrmB
JD965_14460	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JD965_14465	COG0454	-acetyltransferase
JD965_14470	COG0517	IMP dehydrogenase activity
JD965_14475	COG0123	including yeast histone deacetylase and acetoin utilization protein
JD965_14480	COG1360	Flagellar Motor Protein
JD965_14485	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JD965_14490	COG1609	Transcriptional regulator
JD965_14495	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JD965_14495	COG1605	Chorismate mutase
JD965_14500	COG3118	belongs to the thioredoxin family
JD965_14505	COG4980	gas vesicle protein
JD965_14510	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
JD965_14520	COG1674	ftsk spoiiie
JD965_14525	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JD965_14535	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_14545	COG1363	Peptidase, m42
JD965_14550	COG5584	Small secreted protein
JD965_14555	COG0281	malic enzyme
JD965_14560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JD965_14575	COG0510	thiamine kinase activity
JD965_14580	COG1597	lipid kinase activity
JD965_14590	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JD965_14595	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JD965_14600	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JD965_14605	COG2252	PERMEase
JD965_14610	COG4473	ABC transporter
JD965_14615	COG1131	(ABC) transporter
JD965_14620	COG1349	DNA-binding transcription factor activity
JD965_14625	COG1187	pseudouridine synthase activity
JD965_14630	COG2244	polysaccharide biosynthetic process
JD965_14635	COG2081	HI0933 family
JD965_14640	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JD965_14650	COG1609	Transcriptional regulator
JD965_14655	COG1653	transport
JD965_14660	COG1175	transmembrane transport
JD965_14665	COG0395	ABC-type sugar transport system, permease component
JD965_14670	COG1486	melibiose metabolic process
JD965_14680	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JD965_14695	COG2202	Pas domain
JD965_14695	COG1366	Belongs to the anti-sigma-factor antagonist family
JD965_14700	COG2814	Major facilitator Superfamily
JD965_14705	COG5522	Integral membrane protein (intg_mem_TP0381)
JD965_14710	COG0577	efflux transmembrane transporter activity
JD965_14715	COG1136	(ABC) transporter
JD965_14720	COG2205	protein histidine kinase activity
JD965_14725	COG0745	RESPONSE REGULATOR receiver
JD965_14730	COG0577	efflux transmembrane transporter activity
JD965_14735	COG1136	(ABC) transporter
JD965_14755	COG1131	(ABC) transporter
JD965_14760	COG1725	Transcriptional regulator
JD965_14770	COG0640	Transcriptional regulator
JD965_14775	COG0477	Major facilitator Superfamily
JD965_14780	COG1242	4 iron, 4 sulfur cluster binding
JD965_14785	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JD965_14800	COG2267	carboxylic ester hydrolase activity
JD965_14805	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JD965_14810	COG1113	amino acid transport
JD965_14815	COG0367	asparagine synthase
JD965_14835	COG1506	peptidase
JD965_14840	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JD965_14845	COG1116	anion transmembrane transporter activity
JD965_14850	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JD965_14855	COG0494	nUDIX hydrolase
JD965_14860	COG4824	toxin secretion phage lysis holin
JD965_14865	COG0783	Belongs to the Dps family
JD965_14890	COG0288	reversible hydration of carbon dioxide
JD965_14900	COG1271	oxidase subunit
JD965_14905	COG1294	oxidase, subunit
JD965_14915	COG4948	Mandelate Racemase Muconate Lactonizing
JD965_14925	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JD965_14930	COG0596	Alpha beta hydrolase
JD965_14940	COG1169	isochorismate synthase
JD965_14945	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JD965_14950	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
JD965_15075	COG3859	Proton-coupled thiamine transporter YuaJ
JD965_15080	COG2268	Band 7 protein
JD965_15085	COG1585	Membrane protein implicated in regulation of membrane protease activity
JD965_15090	COG2318	DinB family
JD965_15100	COG1454	alcohol dehydrogenase
JD965_15105	COG1012	belongs to the aldehyde dehydrogenase family
JD965_15110	COG1510	regulation of RNA biosynthetic process
JD965_15120	COG0569	domain protein
JD965_15125	COG1705	Flagellar rod assembly protein muramidase FlgJ
JD965_15130	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JD965_15130	COG1017	nitric oxide dioxygenase activity
JD965_15170	COG0628	permease
JD965_15175	COG0673	inositol 2-dehydrogenase activity
JD965_15180	COG0693	protein deglycase activity
JD965_15185	COG0840	transmembrane signaling receptor activity
JD965_15190	COG0840	transmembrane signaling receptor activity
JD965_15195	COG0840	transmembrane signaling receptor activity
JD965_15200	COG0840	transmembrane signaling receptor activity
JD965_15215	COG2070	2-Nitropropane dioxygenase
JD965_15220	COG0432	Pfam Uncharacterised protein family UPF0047
JD965_15225	COG0366	Alpha amylase catalytic
JD965_15230	COG1253	flavin adenine dinucleotide binding
JD965_15235	COG2738	Putative neutral zinc metallopeptidase
JD965_15250	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JD965_15275	COG1335	isochorismatase
JD965_15280	COG1979	alcohol dehydrogenase
JD965_15285	COG1979	alcohol dehydrogenase
JD965_15290	COG2155	Conserved Protein
JD965_15295	COG1098	S1 RNA binding domain
JD965_15300	COG0436	Aminotransferase
JD965_15305	COG1522	sequence-specific DNA binding
JD965_15310	COG2267	carboxylic ester hydrolase activity
JD965_15320	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JD965_15325	COG2205	protein histidine kinase activity
JD965_15335	COG5018	Exonuclease
JD965_15340	COG2814	Major facilitator Superfamily
JD965_15345	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JD965_15350	COG3011	Protein conserved in bacteria
JD965_15360	COG3290	protein histidine kinase activity
JD965_15365	COG4565	transcriptional regulatory protein
JD965_15370	COG1744	ABC transporter substrate-binding protein PnrA-like
JD965_15375	COG3845	ABC transporter
JD965_15380	COG4603	Belongs to the binding-protein-dependent transport system permease family
JD965_15385	COG1079	Belongs to the binding-protein-dependent transport system permease family
JD965_15395	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JD965_15395	COG2111	Na H antiporter
JD965_15400	COG2111	Na H antiporter
JD965_15405	COG1006	Multisubunit Na H antiporter MnhC subunit
JD965_15410	COG0651	ATP synthesis coupled electron transport
JD965_15415	COG1863	multisubunit Na H antiporter MnhE subunit
JD965_15420	COG2212	antiporter activity
JD965_15425	COG1320	monovalent cation:proton antiporter activity
JD965_15430	COG2050	protein possibly involved in aromatic compounds catabolism
JD965_15435	COG2197	response regulator
JD965_15440	COG4585	Histidine kinase
JD965_15450	COG0142	geranyltranstransferase activity
JD965_15465	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JD965_15470	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JD965_15475	COG1335	isochorismatase
JD965_15495	COG0628	permease
JD965_15505	COG1418	mRNA catabolic process
JD965_15510	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_15520	COG2508	Transcriptional regulator
JD965_15520	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
JD965_15525	COG0686	Belongs to the AlaDH PNT family
JD965_15530	COG5634	Uncharacterized conserved protein (DUF2278)
JD965_15535	COG3251	PFAM MbtH domain protein
JD965_15540	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JD965_15545	COG1535	isochorismatase
JD965_15545	COG3433	isochorismatase activity
JD965_15550	COG1021	2,3-dihydroxybenzoate-AMP ligase
JD965_15555	COG1169	isochorismate synthase
JD965_15560	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_15565	COG2819	hydrolase of the alpha beta superfamily
JD965_15570	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JD965_15575	COG1268	BioY protein
JD965_15580	COG2056	Na+-H+ antiporter family
JD965_15590	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
JD965_15595	COG3584	3D domain protein
JD965_15610	COG1252	NADH dehydrogenase
JD965_15645	COG1131	(ABC) transporter
JD965_15670	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
JD965_15675	COG0316	Belongs to the HesB IscA family
JD965_15685	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JD965_15695	COG1252	NADH dehydrogenase
JD965_15700	COG4837	Protein of unknown function (DUF1462)
JD965_15705	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JD965_15710	COG1506	peptidase
JD965_15710	COG4946	Tricorn protease homolog
JD965_15710	COG0823	Involved in the tonB-independent uptake of proteins
JD965_15720	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JD965_15725	COG0460	homoserine dehydrogenase
JD965_15730	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JD965_15735	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JD965_15740	COG0647	UMP catabolic process
JD965_15745	COG2445	Protein of unknown function DUF86
JD965_15750	COG4470	Protein conserved in bacteria
JD965_15760	COG0739	heme binding
JD965_15770	COG0737	Belongs to the 5'-nucleotidase family
JD965_15775	COG0730	response to heat
JD965_15780	COG1801	Protein of unknown function DUF72
JD965_15790	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JD965_15795	COG2508	Transcriptional regulator
JD965_15800	COG2233	PERMEase
JD965_15805	COG2233	PERMEase
JD965_15810	COG3648	Uricase
JD965_15810	COG3195	allantoin biosynthetic process
JD965_15815	COG2351	hydroxyisourate hydrolase activity
JD965_15820	COG1794	racemase activity, acting on amino acids and derivatives
JD965_15825	COG2080	2 iron, 2 sulfur cluster binding
JD965_15830	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JD965_15835	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JD965_15840	COG2068	MobA-Related Protein
JD965_15845	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JD965_15850	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JD965_15855	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JD965_15860	COG2356	endonuclease I
JD965_15865	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JD965_15870	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JD965_15875	COG1116	anion transmembrane transporter activity
JD965_15885	COG3842	ATPase activity
JD965_15890	COG2188	Transcriptional regulator
JD965_15895	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JD965_15900	COG0395	ABC-type sugar transport system, permease component
JD965_15905	COG1175	transmembrane transport
JD965_15910	COG1653	transport
JD965_15915	COG2222	sugar isomerase
JD965_15920	COG0789	Transcriptional regulator
JD965_15930	COG0322	excinuclease ABC activity
JD965_15935	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JD965_15955	COG3409	Peptidoglycan-binding domain 1 protein
JD965_15960	COG0719	Fe-S assembly protein
JD965_15965	COG0822	iron-sulfur transferase activity
JD965_15970	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JD965_15975	COG0719	Fe-S assembly protein
JD965_15980	COG0396	ATPase activity
JD965_15990	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JD965_15995	COG1464	Belongs to the NlpA lipoprotein family
JD965_16000	COG2011	ABC-type metal ion transport system permease component
JD965_16005	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JD965_16015	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JD965_16020	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JD965_16035	COG1393	Belongs to the ArsC family
JD965_16040	COG1960	acyl-CoA dehydrogenase activity
JD965_16045	COG0183	Belongs to the thiolase family
JD965_16050	COG1250	3-hydroxyacyl-CoA dehydrogenase
JD965_16050	COG1024	Enoyl-CoA hydratase
JD965_16070	COG5577	PFAM Coat F domain
JD965_16075	COG1846	Transcriptional regulator
JD965_16080	COG0477	Major facilitator Superfamily
JD965_16085	COG1942	4-Oxalocrotonate Tautomerase
JD965_16095	COG0583	DNA-binding transcription factor activity
JD965_16105	COG1120	ATPase activity
JD965_16120	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_16125	COG0783	Belongs to the Dps family
JD965_16130	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JD965_16135	COG0745	RESPONSE REGULATOR receiver
JD965_16140	COG2770	Histidine kinase
JD965_16140	COG2205	protein histidine kinase activity
JD965_16150	COG1309	transcriptional regulator
JD965_16155	COG0114	fumarate hydratase activity
JD965_16165	COG0697	spore germination
JD965_16170	COG0814	amino acid
JD965_16180	COG2197	response regulator
JD965_16185	COG4585	Histidine kinase
JD965_16190	COG4758	membrane
JD965_16195	COG3595	metallopeptidase activity
JD965_16200	COG1842	Phage shock protein A
JD965_16205	COG4758	membrane
JD965_16210	COG2814	Major facilitator Superfamily
JD965_16215	COG2096	Adenosyltransferase
JD965_16220	COG1120	ATPase activity
JD965_16225	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_16230	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JD965_16235	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_16240	COG3386	PFAM SMP-30 Gluconolaconase
JD965_16245	COG2205	protein histidine kinase activity
JD965_16250	COG0745	RESPONSE REGULATOR receiver
JD965_16260	COG1191	sigma factor activity
JD965_16270	COG2140	Oxalate decarboxylase
JD965_16280	COG1120	ATPase activity
JD965_16285	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_16290	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_16295	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JD965_16300	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
JD965_16305	COG0531	amino acid
JD965_16315	COG1988	membrane-bound metal-dependent
JD965_16320	COG1368	sulfuric ester hydrolase activity
JD965_16325	COG1910	domain protein
JD965_16330	COG0725	ABC transporter, periplasmic molybdate-binding protein
JD965_16335	COG4149	molybdate abc transporter
JD965_16340	COG2197	response regulator
JD965_16350	COG1131	(ABC) transporter
JD965_16360	COG0842	Transport permease protein
JD965_16375	COG0656	L-ascorbic acid biosynthetic process
JD965_16400	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JD965_16405	COG3973	AAA domain
JD965_16410	COG2860	membrane
JD965_16420	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JD965_16425	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JD965_16430	COG2217	Heavy metal translocating P-type atpase
JD965_16435	COG2217	Heavy metal translocating P-type atpase
JD965_16440	COG2608	mercury ion transmembrane transporter activity
JD965_16445	COG1937	Protein conserved in bacteria
JD965_16450	COG0673	inositol 2-dehydrogenase activity
JD965_16460	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JD965_16465	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JD965_16470	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JD965_16475	COG1126	abc transporter atp-binding protein
JD965_16480	COG0765	amino acid transport
JD965_16485	COG0765	amino acid transport
JD965_16490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JD965_16495	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JD965_16500	COG0454	-acetyltransferase
JD965_16505	COG0583	DNA-binding transcription factor activity
JD965_16510	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_16515	COG2732	(Barnase) inhibitor
JD965_16535	COG0557	exoribonuclease II activity
JD965_16540	COG1647	Serine aminopeptidase, S33
JD965_16545	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JD965_16550	COG1476	TRANSCRIPTIONal
JD965_16555	COG1396	sequence-specific DNA binding
JD965_16560	COG1396	sequence-specific DNA binding
JD965_16565	COG1733	regulation of RNA biosynthetic process
JD965_16590	COG1131	(ABC) transporter
JD965_16595	COG1174	glycine betaine transport
JD965_16600	COG1732	Glycine betaine
JD965_16605	COG1174	glycine betaine transport
JD965_16610	COG1125	glycine betaine transport
JD965_16610	COG0517	IMP dehydrogenase activity
JD965_16615	COG1510	regulation of RNA biosynthetic process
JD965_16620	COG1174	glycine betaine transport
JD965_16625	COG1732	Glycine betaine
JD965_16630	COG1174	glycine betaine transport
JD965_16635	COG0517	IMP dehydrogenase activity
JD965_16635	COG1125	glycine betaine transport
JD965_16640	COG1510	regulation of RNA biosynthetic process
JD965_16645	COG2095	MarC family integral membrane protein
JD965_16650	COG3064	Membrane
JD965_16655	COG4640	response to antibiotic
JD965_16660	COG0456	acetyltransferase
JD965_16680	COG0126	phosphoglycerate kinase activity
JD965_16685	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JD965_16690	COG2390	Transcriptional regulator
JD965_16695	COG2814	Major facilitator Superfamily
JD965_16700	COG1609	Transcriptional regulator
JD965_16705	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JD965_16710	COG0583	DNA-binding transcription factor activity
JD965_16715	COG0697	spore germination
JD965_16720	COG1113	amino acid transport
JD965_16730	COG1609	Transcriptional regulator
JD965_16740	COG0561	phosphatase activity
JD965_16745	COG1737	Transcriptional regulator
JD965_16750	COG1070	Carbohydrate kinase
JD965_16770	COG2801	Transposase and inactivated derivatives
JD965_16800	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JD965_16805	COG2186	Transcriptional regulator
JD965_16810	COG1620	l-lactate permease
JD965_16815	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JD965_16825	COG5039	Polysaccharide pyruvyl transferase
JD965_16830	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JD965_16835	COG0110	maltose O-acetyltransferase activity
JD965_16840	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JD965_16845	COG2244	polysaccharide biosynthetic process
JD965_16850	COG1216	Glycosyl transferase, family 2
JD965_16855	COG5039	Polysaccharide pyruvyl transferase
JD965_16860	COG1216	Glycosyl transferase, family 2
JD965_16870	COG0438	transferase activity, transferring glycosyl groups
JD965_16875	COG1215	transferase activity, transferring glycosyl groups
JD965_16880	COG0438	transferase activity, transferring glycosyl groups
JD965_16885	COG1086	Polysaccharide biosynthesis protein
JD965_16890	COG0489	protein tyrosine kinase activity
JD965_16895	COG3944	biosynthesis protein
JD965_16900	COG1396	sequence-specific DNA binding
JD965_16905	COG2272	Belongs to the type-B carboxylesterase lipase family
JD965_16915	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JD965_16920	COG2364	Membrane
JD965_16925	COG0456	acetyltransferase
JD965_16930	COG3479	Phenolic acid decarboxylase
JD965_16960	COG1609	Transcriptional regulator
JD965_16970	COG0583	DNA-binding transcription factor activity
JD965_16975	COG2828	Protein conserved in bacteria
JD965_16980	COG0477	Major facilitator Superfamily
JD965_16980	COG2814	Major facilitator Superfamily
JD965_16990	COG1611	Belongs to the LOG family
JD965_16995	COG1694	Mazg nucleotide pyrophosphohydrolase
JD965_17005	COG0288	reversible hydration of carbon dioxide
JD965_17010	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JD965_17015	COG4290	ribonuclease
JD965_17020	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JD965_17025	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JD965_17035	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JD965_17045	COG1051	belongs to the nudix hydrolase family
JD965_17050	COG0492	ferredoxin-NADP+ reductase activity
JD965_17055	COG0791	NLP P60 protein
JD965_17055	COG3883	PFAM NLP P60 protein
JD965_17060	COG0457	Tetratricopeptide repeat
JD965_17065	COG5002	protein histidine kinase activity
JD965_17070	COG0745	RESPONSE REGULATOR receiver
JD965_17080	COG1132	(ABC) transporter
JD965_17085	COG0140	phosphoribosyl-ATP diphosphatase activity
JD965_17085	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JD965_17110	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JD965_17125	COG4990	cell redox homeostasis
JD965_17130	COG0110	maltose O-acetyltransferase activity
JD965_17150	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JD965_17160	COG2188	Transcriptional regulator
JD965_17165	COG1309	transcriptional regulator
JD965_17170	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JD965_17180	COG1950	PFAM Membrane protein of
JD965_17185	COG1983	PspC domain protein
JD965_17190	COG3595	metallopeptidase activity
JD965_17205	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JD965_17215	COG4897	Protein conserved in bacteria
JD965_17220	COG0574	Belongs to the PEP-utilizing enzyme family
JD965_17220	COG3848	Pyruvate phosphate dikinase
JD965_17225	COG1309	transcriptional regulator
JD965_17230	COG2814	Major facilitator Superfamily
JD965_17240	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JD965_17250	COG3409	Peptidoglycan-binding domain 1 protein
JD965_17250	COG0793	Belongs to the peptidase S41A family
JD965_17255	COG3420	alginic acid biosynthetic process
JD965_17260	COG2177	Part of the ABC transporter FtsEX involved in
JD965_17265	COG2884	Cell division ATP-binding protein ftsE
JD965_17270	COG2010	Cytochrome c
JD965_17275	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JD965_17290	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JD965_17305	COG1516	flagellar protein fliS
JD965_17310	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JD965_17315	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JD965_17335	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JD965_17340	COG4786	Flagellar basal body rod
JD965_17340	COG1256	bacterial-type flagellum assembly
JD965_17345	COG3418	PFAM FlgN family protein
JD965_17350	COG2747	anti-sigma28 factor FlgM
JD965_17360	COG1040	competence protein
JD965_17370	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JD965_17375	COG1307	EDD domain protein, DegV family
JD965_17380	COG2197	response regulator
JD965_17385	COG4585	Histidine kinase
JD965_17390	COG1739	Uncharacterized protein family UPF0029
JD965_17395	COG1316	TRANSCRIPTIONal
JD965_17400	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JD965_17405	COG0438	transferase activity, transferring glycosyl groups
JD965_17410	COG1215	transferase activity, transferring glycosyl groups
JD965_17415	COG3206	protein involved in exopolysaccharide biosynthesis
JD965_17420	COG3307	-O-antigen
JD965_17425	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JD965_17430	COG0438	transferase activity, transferring glycosyl groups
JD965_17430	COG0297	glycogen (starch) synthase activity
JD965_17435	COG2244	polysaccharide biosynthetic process
JD965_17445	COG1316	TRANSCRIPTIONal
JD965_17450	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JD965_17455	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JD965_17460	COG1134	teichoic acid transport
JD965_17465	COG1682	transport, permease protein
JD965_17470	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JD965_17480	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JD965_17485	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JD965_17490	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
JD965_17495	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JD965_17500	COG4193	domain, Protein
JD965_17505	COG1216	Glycosyl transferase, family 2
JD965_17505	COG1442	glycosyl transferase family 8
JD965_17515	COG1181	Belongs to the D-alanine--D-alanine ligase family
JD965_17520	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JD965_17520	COG0463	Glycosyl transferase, family 2
JD965_17530	COG1482	cell wall glycoprotein biosynthetic process
JD965_17535	COG0697	spore germination
JD965_17540	COG0814	amino acid
JD965_17550	COG0463	Glycosyl transferase, family 2
JD965_17555	COG2814	Major facilitator Superfamily
JD965_17560	COG1316	TRANSCRIPTIONal
JD965_17565	COG0561	phosphatase activity
JD965_17570	COG2433	Pfam Transposase IS66
JD965_17575	COG0791	NLP P60 protein
JD965_17585	COG2843	Capsule synthesis protein
JD965_17595	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JD965_17605	COG1609	Transcriptional regulator
JD965_17610	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JD965_17620	COG1129	ABC transporter
JD965_17625	COG1172	Belongs to the binding-protein-dependent transport system permease family
JD965_17630	COG1879	ABC-type sugar transport system periplasmic component
JD965_17635	COG3103	Sh3 type 3 domain protein
JD965_17640	COG2249	NAD(P)H dehydrogenase (quinone) activity
JD965_17645	COG3527	Alpha-acetolactate decarboxylase
JD965_17650	COG0028	Belongs to the TPP enzyme family
JD965_17655	COG0583	DNA-binding transcription factor activity
JD965_17660	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JD965_17675	COG5337	Spore coat protein CotH
JD965_17685	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JD965_17695	COG0405	Gamma-glutamyltransferase
JD965_17700	COG1522	sequence-specific DNA binding
JD965_17705	COG2059	Chromate
JD965_17710	COG2059	Chromate
JD965_17720	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JD965_17725	COG4464	protein tyrosine phosphatase activity
JD965_17730	COG0489	protein tyrosine kinase activity
JD965_17735	COG3944	biosynthesis protein
JD965_17745	COG4715	Zinc finger, swim domain protein
JD965_17750	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JD965_17755	COG0561	phosphatase activity
JD965_17760	COG1349	DNA-binding transcription factor activity
JD965_17765	COG0629	single-stranded DNA binding
JD965_17790	COG0457	Tetratricopeptide repeat
JD965_17795	COG4786	Flagellar basal body rod
JD965_17800	COG4786	Flagellar basal body rod
JD965_17805	COG1077	Cell shape determining protein MreB Mrl
JD965_17810	COG1609	Transcriptional regulator
JD965_17815	COG1846	Transcriptional regulator
JD965_17820	COG2814	Major facilitator Superfamily
JD965_17825	COG1953	Uracil, thiamine, allantoin
JD965_17830	COG0477	Major facilitator Superfamily
JD965_17835	COG1335	isochorismatase
JD965_17840	COG0004	ammonium transporteR
JD965_17845	COG0347	Belongs to the P(II) protein family
JD965_17850	COG0772	Belongs to the SEDS family
JD965_17855	COG0671	phosphoesterase, PA-phosphatase related
JD965_17865	COG0739	heme binding
JD965_17870	COG1247	-acetyltransferase
JD965_17885	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JD965_17895	COG0726	polysaccharide deacetylase
JD965_17900	COG1959	2 iron, 2 sulfur cluster binding
JD965_17915	COG0831	urea catabolic process
JD965_17920	COG3237	CsbD-like
JD965_17925	COG1994	Peptidase M50
JD965_17930	COG0457	Tetratricopeptide repeat
JD965_17940	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JD965_17950	COG2304	oxidoreductase activity
JD965_17955	COG2304	oxidoreductase activity
JD965_17960	COG2385	sporulation resulting in formation of a cellular spore
JD965_17965	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JD965_17975	COG4836	Membrane
JD965_18045	COG0698	ribose 5-phosphate isomerase
JD965_18050	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JD965_18060	COG0009	L-threonylcarbamoyladenylate synthase
JD965_18065	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JD965_18085	COG2890	protein-(glutamine-N5) methyltransferase activity
JD965_18090	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JD965_18095	COG0346	lactoylglutathione lyase activity
JD965_18100	COG0789	Transcriptional regulator
JD965_18105	COG0679	Auxin Efflux Carrier
JD965_18110	COG0281	malic enzyme
JD965_18125	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JD965_18130	COG1494	fructose-1,6-bisphosphatase
JD965_18135	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JD965_18145	COG0191	fructose-bisphosphate aldolase activity
JD965_18150	COG2204	response regulator
JD965_18155	COG4821	SIS domain
JD965_18170	COG2181	nitrate reductase activity
JD965_18170	COG0247	lactate metabolic process
JD965_18175	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JD965_18195	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JD965_18205	COG2181	nitrate reductase activity
JD965_18210	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JD965_18215	COG1140	nitrate reductase beta subunit
JD965_18220	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JD965_18225	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JD965_18235	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JD965_18240	COG2223	nitrite transmembrane transporter activity
JD965_18250	COG4506	Protein conserved in bacteria
JD965_18255	COG3391	amine dehydrogenase activity
JD965_18260	COG0457	Tetratricopeptide repeat
JD965_18285	COG0010	Belongs to the arginase family
JD965_18290	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JD965_18295	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JD965_18310	COG1994	Peptidase M50
JD965_18315	COG1942	4-Oxalocrotonate Tautomerase
JD965_18320	COG1846	Transcriptional regulator
JD965_18325	COG0531	amino acid
JD965_18330	COG3465	dGTPase activity
JD965_18335	COG1078	dGTPase activity
JD965_18350	COG1695	Transcriptional regulator
JD965_18370	COG0583	DNA-binding transcription factor activity
JD965_18375	COG2855	membrane
JD965_18380	COG0280	phosphate acetyltransferase
JD965_18395	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_18405	COG2814	Major facilitator Superfamily
JD965_18410	COG2814	Major facilitator Superfamily
JD965_18415	COG0833	amino acid
JD965_18420	COG4187	Peptidase family M20/M25/M40
JD965_18425	COG1012	belongs to the aldehyde dehydrogenase family
JD965_18430	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JD965_18435	COG2205	protein histidine kinase activity
JD965_18440	COG0745	RESPONSE REGULATOR receiver
JD965_18455	COG1131	(ABC) transporter
JD965_18460	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
JD965_18465	COG1091	dTDP-4-dehydrorhamnose reductase activity
JD965_18470	COG1088	dTDP-glucose 4,6-dehydratase activity
JD965_18475	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JD965_18480	COG3980	spore coat polysaccharide biosynthesis protein
JD965_18485	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
JD965_18490	COG2089	acid synthase
JD965_18495	COG0456	acetyltransferase
JD965_18500	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JD965_18505	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JD965_18510	COG0463	Glycosyl transferase, family 2
JD965_18520	COG2363	Small membrane protein
JD965_18525	COG2233	PERMEase
JD965_18540	COG1216	Glycosyl transferase, family 2
JD965_18555	COG1695	Transcriptional regulator
JD965_18560	COG0351	phosphomethylpyrimidine kinase
JD965_18570	COG1621	beta-fructofuranosidase activity
JD965_18575	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JD965_18575	COG1263	PTS System
JD965_18580	COG3711	transcriptional antiterminator
JD965_18590	COG1404	Belongs to the peptidase S8 family
JD965_18595	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JD965_18600	COG2378	regulation of single-species biofilm formation
JD965_18620	COG0778	Nitroreductase
JD965_18625	COG0772	Belongs to the SEDS family
JD965_18630	COG0454	-acetyltransferase
JD965_18650	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JD965_18655	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JD965_18660	COG2261	transglycosylase associated protein
JD965_18665	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
JD965_18670	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JD965_18675	COG2246	polysaccharide biosynthetic process
JD965_18680	COG1309	transcriptional regulator
JD965_18690	COG2813	Specifically methylates the guanine in position
JD965_18700	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JD965_18705	COG2837	iron assimilation
JD965_18710	COG2822	iron ion transport
JD965_18725	COG0583	DNA-binding transcription factor activity
JD965_18735	COG1346	cytolysis
JD965_18740	COG4895	conserved protein (DUF2196)
JD965_18745	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JD965_18750	COG0346	lactoylglutathione lyase activity
JD965_18755	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JD965_18760	COG1404	Belongs to the peptidase S8 family
JD965_18765	COG1442	glycosyl transferase family 8
JD965_18770	COG2357	RelA SpoT domain protein
JD965_18775	COG1575	Belongs to the MenA family. Type 1 subfamily
JD965_18790	COG1696	Membrane protein involved in D-alanine export
JD965_18805	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JD965_18810	COG1486	melibiose metabolic process
JD965_18815	COG1447	Phosphotransferase system cellobiose-specific component IIA
JD965_18820	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JD965_18825	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JD965_18830	COG3711	transcriptional antiterminator
JD965_18830	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JD965_18840	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_18845	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JD965_18855	COG0640	Transcriptional regulator
JD965_18860	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JD965_18865	COG0753	catalase activity
JD965_18870	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JD965_18875	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JD965_18880	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JD965_18885	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JD965_18890	COG4988	ABC transporter
JD965_18895	COG1294	oxidase, subunit
JD965_18900	COG1271	oxidase subunit
JD965_18905	COG3493	citrate carrier protein
JD965_18910	COG0726	polysaccharide deacetylase
JD965_18915	COG3842	ATPase activity
JD965_18920	COG2508	Transcriptional regulator
JD965_18925	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JD965_18935	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JD965_18950	COG4894	glucomannan catabolic process
JD965_18955	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JD965_18960	COG0500	methyltransferase
JD965_18965	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JD965_18980	COG0693	protein deglycase activity
JD965_18980	COG0753	catalase activity
JD965_18985	COG2851	Citrate transporter
JD965_18990	COG2273	Hydrolase Family 16
JD965_18995	COG3711	transcriptional antiterminator
JD965_19000	COG2270	Major facilitator Superfamily
JD965_19005	COG0513	Belongs to the DEAD box helicase family
JD965_19055	COG3209	COG3209 Rhs family protein
JD965_19065	COG0697	spore germination
JD965_19070	COG0589	response to stress
JD965_19075	COG2723	6-phospho-beta-galactosidase activity
JD965_19080	COG1263	PTS System
JD965_19080	COG2190	(PTS) system
JD965_19080	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JD965_19090	COG0494	nUDIX hydrolase
JD965_19100	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JD965_19105	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JD965_19115	COG2390	Transcriptional regulator
JD965_19120	COG0561	phosphatase activity
JD965_19150	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JD965_19155	COG5294	Protein conserved in bacteria
JD965_19160	COG0577	efflux transmembrane transporter activity
JD965_19165	COG1136	(ABC) transporter
JD965_19170	COG2205	protein histidine kinase activity
JD965_19175	COG0745	RESPONSE REGULATOR receiver
JD965_19180	COG2205	protein histidine kinase activity
JD965_19185	COG0745	RESPONSE REGULATOR receiver
JD965_19205	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JD965_19210	COG0191	fructose-bisphosphate aldolase activity
JD965_19215	COG1082	Xylose isomerase domain protein TIM barrel
JD965_19250	COG1349	DNA-binding transcription factor activity
JD965_19255	COG0667	Aldo Keto reductase
JD965_19260	COG2814	Major facilitator Superfamily
JD965_19270	COG1028	Short-chain dehydrogenase reductase Sdr
JD965_19275	COG2197	response regulator
JD965_19280	COG4585	Histidine kinase
JD965_19285	COG3239	Fatty acid desaturase
JD965_19290	COG1309	transcriptional regulator
JD965_19300	COG1476	TRANSCRIPTIONal
JD965_19330	COG1012	belongs to the aldehyde dehydrogenase family
JD965_19335	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JD965_19345	COG0640	Transcriptional regulator
JD965_19350	COG2814	Major facilitator Superfamily
JD965_19355	COG1714	RDD family
JD965_19365	COG0450	alkyl hydroperoxide reductase
JD965_19370	COG3634	alkyl hydroperoxide reductase activity
JD965_19375	COG1113	amino acid transport
JD965_19385	COG2080	2 iron, 2 sulfur cluster binding
JD965_19400	COG2068	MobA-Related Protein
JD965_19405	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JD965_19445	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JD965_19470	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
JD965_19475	COG0456	acetyltransferase
JD965_19480	COG0457	Tetratricopeptide repeat
JD965_19485	COG0010	Belongs to the arginase family
JD965_19490	COG0833	amino acid
JD965_19495	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JD965_19500	COG5658	integral membrane protein
JD965_19505	COG0640	Transcriptional regulator
JD965_19510	COG3829	transcription factor binding
JD965_19520	COG0488	(ABC) transporter
JD965_19535	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JD965_19550	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JD965_19555	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JD965_19560	COG4853	Protein conserved in bacteria
JD965_19565	COG4863	YycH protein
JD965_19570	COG5002	protein histidine kinase activity
JD965_19575	COG0745	RESPONSE REGULATOR receiver
JD965_19605	COG0346	lactoylglutathione lyase activity
JD965_19610	COG0305	Participates in initiation and elongation during chromosome replication
JD965_19625	COG3093	addiction module antidote protein HigA
JD965_19630	COG0438	transferase activity, transferring glycosyl groups
JD965_19640	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JD965_19645	COG0438	transferase activity, transferring glycosyl groups
JD965_19665	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
JD965_19670	COG4241	membrane
JD965_19680	COG5577	PFAM Coat F domain
JD965_19685	COG1733	regulation of RNA biosynthetic process
JD965_19710	COG0697	spore germination
JD965_19715	COG1621	beta-fructofuranosidase activity
JD965_19720	COG1621	beta-fructofuranosidase activity
JD965_19725	COG1802	Transcriptional regulator
JD965_19730	COG2318	DinB family
JD965_19735	COG2211	Major facilitator Superfamily
JD965_19745	COG2197	response regulator
JD965_19750	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JD965_19750	COG0512	Glutamine amidotransferase of anthranilate synthase
JD965_19755	COG0697	spore germination
JD965_19760	COG0583	DNA-binding transcription factor activity
JD965_19770	COG0778	Nitroreductase
JD965_19775	COG1846	Transcriptional regulator
JD965_19780	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JD965_19785	COG1846	Transcriptional regulator
JD965_19790	COG2153	protein acetylation
JD965_19800	COG1078	dGTPase activity
JD965_19805	COG1331	Highly conserved protein containing a thioredoxin domain
JD965_19815	COG0457	Tetratricopeptide repeat
JD965_19840	COG0741	lytic transglycosylase activity
JD965_19840	COG0791	NLP P60 protein
JD965_19845	COG5644	endopeptidase inhibitor activity
JD965_19855	COG0433	COG0433 Predicted ATPase
JD965_19905	COG2946	Replication initiation factor
JD965_19910	COG1674	ftsk spoiiie
JD965_19935	COG1396	sequence-specific DNA binding
JD965_19940	COG2856	Zn peptidase
JD965_19960	COG1331	Highly conserved protein containing a thioredoxin domain
JD965_19965	COG1331	Highly conserved protein containing a thioredoxin domain
JD965_19970	COG1266	CAAX protease self-immunity
JD965_19975	COG2814	Major facilitator Superfamily
JD965_19975	COG0477	Major facilitator Superfamily
JD965_19980	COG0346	lactoylglutathione lyase activity
JD965_19985	COG1609	Transcriptional regulator
JD965_19990	COG0708	Exodeoxyribonuclease III
JD965_19995	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JD965_20000	COG2169	Transcriptional regulator
JD965_20010	COG0629	single-stranded DNA binding
JD965_20020	COG0012	GTP binding
JD965_20025	COG0243	molybdopterin cofactor binding
JD965_20030	COG4481	Protein conserved in bacteria
JD965_20035	COG3949	Membrane
JD965_20050	COG1475	DNA binding
JD965_20055	COG1192	Involved in chromosome partitioning
JD965_20080	COG1847	R3H domain protein
JD965_20085	COG0706	membrane insertase activity