locus-tag class description CJO35_00005 PF00308 Bacterial dnaA protein CJO35_00005 PF08299 Bacterial dnaA protein helix-turn-helix CJO35_00005 PF11638 DnaA N-terminal domain CJO35_00010 PF02767 DNA polymerase III beta subunit, central domain CJO35_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJO35_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJO35_00020 PF02463 RecF/RecN/SMC N terminal domain CJO35_00025 PF04025 Domain of unknown function (DUF370) CJO35_00030 PF01751 Toprim domain CJO35_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_00030 PF00986 DNA gyrase B subunit, carboxyl terminus CJO35_00030 PF00204 DNA gyrase B CJO35_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller CJO35_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A CJO35_00065 PF14175 YaaC-like Protein CJO35_00070 PF00571 CBS domain CJO35_00070 PF00478 IMP dehydrogenase / GMP reductase domain CJO35_00075 PF07943 Penicillin-binding protein 5, C-terminal domain CJO35_00075 PF00768 D-alanyl-D-alanine carboxypeptidase CJO35_00080 PF01680 SOR/SNZ family CJO35_00085 PF01174 SNO glutamine amidotransferase family CJO35_00090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO35_00090 PF02403 Seryl-tRNA synthetase N-terminal domain CJO35_00095 PF02595 Glycerate kinase family CJO35_00100 PF02447 GntP family permease CJO35_00105 PF17853 GGDEF-like domain CJO35_00105 PF05651 Putative sugar diacid recognition CJO35_00105 PF13556 PucR C-terminal helix-turn-helix domain CJO35_00120 PF01712 Deoxynucleoside kinase CJO35_00125 PF01712 Deoxynucleoside kinase CJO35_00130 PF01476 LysM domain CJO35_00130 PF00704 Glycosyl hydrolases family 18 CJO35_00135 PF00857 Isochorismatase family CJO35_00140 PF14437 MafB19-like deaminase CJO35_00150 PF12169 DNA polymerase III subunits gamma and tau domain III CJO35_00155 PF02575 YbaB/EbfC DNA-binding family CJO35_00160 PF02132 RecR protein CJO35_00160 PF13662 Toprim domain CJO35_00165 PF10704 Protein of unknown function (DUF2508) CJO35_00170 PF07441 SigmaK-factor processing regulatory protein BofA CJO35_00200 PF10764 Inhibitor of sigma-G Gin CJO35_00205 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein CJO35_00210 PF05816 Toxic anion resistance protein (TelA) CJO35_00215 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJO35_00215 PF01276 Orn/Lys/Arg decarboxylase, major domain CJO35_00220 PF02223 Thymidylate kinase CJO35_00225 PF06153 Cyclic-di-AMP receptor CJO35_00230 PF03885 Protein of unknown function (DUF327) CJO35_00235 PF09115 DNA polymerase III, delta subunit, C terminal CJO35_00240 PF04468 PSP1 C-terminal conserved region CJO35_00245 PF06156 Initiation control protein YabA CJO35_00250 PF05175 Methyltransferase small domain CJO35_00255 PF01541 GIY-YIG catalytic domain CJO35_00260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO35_00265 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJO35_00265 PF18277 AbrB C-terminal domain CJO35_00270 PF01588 Putative tRNA binding domain CJO35_00270 PF09334 tRNA synthetases class I (M) CJO35_00270 PF08264 Anticodon-binding domain of tRNA CJO35_00275 PF01026 TatD related DNase CJO35_00280 PF07501 G5 domain CJO35_00280 PF03990 G5-linked-Ubiquitin-like domain CJO35_00280 PF06725 3D domain CJO35_00285 PF13662 Toprim domain CJO35_00285 PF13331 Domain of unknown function (DUF4093) CJO35_00290 PF00398 Ribosomal RNA adenine dimethylase CJO35_00295 PF05582 YabG peptidase U57 CJO35_00300 PF06257 Biofilm formation stimulator VEG CJO35_00305 PF00269 Small, acid-soluble spore proteins, alpha/beta type CJO35_00310 PF00288 GHMP kinases N terminal domain CJO35_00310 PF08544 GHMP kinases C terminal CJO35_00315 PF09182 Bacterial purine repressor, N-terminal CJO35_00315 PF00156 Phosphoribosyl transferase domain CJO35_00320 PF01042 Endoribonuclease L-PSP CJO35_00325 PF04026 SpoVG CJO35_00330 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_00330 PF00483 Nucleotidyl transferase CJO35_00335 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJO35_00335 PF14572 Phosphoribosyl synthetase-associated domain CJO35_00340 PF01386 Ribosomal L25p family CJO35_00340 PF14693 Ribosomal protein TL5, C-terminal domain CJO35_00345 PF01195 Peptidyl-tRNA hydrolase CJO35_00350 PF10955 Protein of unknown function (DUF2757) CJO35_00355 PF17757 UvrB interaction domain CJO35_00355 PF03461 TRCF domain CJO35_00355 PF00271 Helicase conserved C-terminal domain CJO35_00355 PF00270 DEAD/DEAH box helicase CJO35_00355 PF02559 CarD-like/TRCF domain CJO35_00360 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJO35_00360 PF15714 Stage V sporulation protein T C-terminal, transcription factor CJO35_00365 PF01943 Polysaccharide biosynthesis protein CJO35_00365 PF14667 Polysaccharide biosynthesis C-terminal domain CJO35_00370 PF03819 MazG nucleotide pyrophosphohydrolase domain CJO35_00370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO35_00375 PF01479 S4 domain CJO35_00380 PF07873 YabP family CJO35_00385 PF09578 Spore cortex protein YabQ (Spore_YabQ) CJO35_00390 PF04977 Septum formation initiator CJO35_00395 PF00575 S1 RNA binding domain CJO35_00410 PF07228 Stage II sporulation protein E (SpoIIE) CJO35_00415 PF00092 von Willebrand factor type A domain CJO35_00420 PF00069 Protein kinase domain CJO35_00425 PF09179 TilS substrate binding domain CJO35_00425 PF01171 PP-loop family CJO35_00425 PF11734 TilS substrate C-terminal domain CJO35_00435 PF17862 AAA+ lid domain CJO35_00435 PF01434 Peptidase family M41 CJO35_00435 PF06480 FtsH Extracellular CJO35_00435 PF00004 ATPase family associated with various cellular activities (AAA) CJO35_00440 PF03309 Type III pantothenate kinase CJO35_00445 PF01430 Hsp33 protein CJO35_00450 PF13145 PPIC-type PPIASE domain CJO35_00455 PF00291 Pyridoxal-phosphate dependent enzyme CJO35_00465 PF00425 chorismate binding enzyme CJO35_00465 PF04715 Anthranilate synthase component I, N terminal region CJO35_00470 PF00117 Glutamine amidotransferase class-I CJO35_00475 PF01063 Amino-transferase class IV CJO35_00480 PF00809 Pterin binding enzyme CJO35_00485 PF02152 Dihydroneopterin aldolase CJO35_00490 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJO35_00495 PF01381 Helix-turn-helix CJO35_00500 PF01207 Dihydrouridine synthase (Dus) CJO35_00505 PF01336 OB-fold nucleic acid binding domain CJO35_00505 PF00152 tRNA synthetases class II (D, K and N) CJO35_00585 PF17727 CtsR C-terminal dimerization domain CJO35_00585 PF05848 CtsR N-terminal HTH domain CJO35_00590 PF02151 UvrB/uvrC motif CJO35_00595 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CJO35_00600 PF17871 AAA lid domain CJO35_00600 PF07724 AAA domain (Cdc48 subfamily) CJO35_00600 PF10431 C-terminal, D2-small domain, of ClpB protein CJO35_00600 PF00004 ATPase family associated with various cellular activities (AAA) CJO35_00600 PF02861 Clp amino terminal domain, pathogenicity island component CJO35_00605 PF18073 Rubredoxin metal binding domain CJO35_00610 PF02457 DisA bacterial checkpoint controller nucleotide-binding CJO35_00610 PF10635 DisA bacterial checkpoint controller linker region CJO35_00620 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJO35_00625 PF02542 YgbB family CJO35_00630 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJO35_00635 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_00640 PF09190 DALR domain CJO35_00640 PF01406 tRNA synthetases class I (C) catalytic domain CJO35_00645 PF00636 Ribonuclease III domain CJO35_00650 PF00588 SpoU rRNA Methylase family CJO35_00650 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJO35_00655 PF05991 YacP-like NYN domain CJO35_00660 PF08281 Sigma-70, region 4 CJO35_00660 PF04542 Sigma-70 region 2 CJO35_00665 PF00471 Ribosomal protein L33 CJO35_00670 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CJO35_00675 PF00467 KOW motif CJO35_00675 PF02357 Transcription termination factor nusG CJO35_00680 PF03946 Ribosomal protein L11, N-terminal domain CJO35_00680 PF00298 Ribosomal protein L11, RNA binding domain CJO35_00685 PF00687 Ribosomal protein L1p/L10e family CJO35_00690 PF00466 Ribosomal protein L10 CJO35_00695 PF00542 Ribosomal protein L7/L12 C-terminal domain CJO35_00695 PF16320 Ribosomal protein L7/L12 dimerisation domain CJO35_00700 PF05175 Methyltransferase small domain CJO35_00705 PF00562 RNA polymerase Rpb2, domain 6 CJO35_00705 PF10385 RNA polymerase beta subunit external 1 domain CJO35_00705 PF04563 RNA polymerase beta subunit CJO35_00705 PF04560 RNA polymerase Rpb2, domain 7 CJO35_00705 PF04565 RNA polymerase Rpb2, domain 3 CJO35_00705 PF04561 RNA polymerase Rpb2, domain 2 CJO35_00710 PF04998 RNA polymerase Rpb1, domain 5 CJO35_00710 PF05000 RNA polymerase Rpb1, domain 4 CJO35_00710 PF04997 RNA polymerase Rpb1, domain 1 CJO35_00710 PF00623 RNA polymerase Rpb1, domain 2 CJO35_00710 PF04983 RNA polymerase Rpb1, domain 3 CJO35_00715 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CJO35_00720 PF00164 Ribosomal protein S12/S23 CJO35_00725 PF00177 Ribosomal protein S7p/S5e CJO35_00730 PF03764 Elongation factor G, domain IV CJO35_00730 PF00009 Elongation factor Tu GTP binding domain CJO35_00730 PF03144 Elongation factor Tu domain 2 CJO35_00730 PF00679 Elongation factor G C-terminus CJO35_00730 PF14492 Elongation Factor G, domain II CJO35_00735 PF03143 Elongation factor Tu C-terminal domain CJO35_00735 PF03144 Elongation factor Tu domain 2 CJO35_00735 PF00009 Elongation factor Tu GTP binding domain CJO35_00740 PF00338 Ribosomal protein S10p/S20e CJO35_00745 PF00297 Ribosomal protein L3 CJO35_00750 PF00573 Ribosomal protein L4/L1 family CJO35_00755 PF00276 Ribosomal protein L23 CJO35_00760 PF00181 Ribosomal Proteins L2, RNA binding domain CJO35_00760 PF03947 Ribosomal Proteins L2, C-terminal domain CJO35_00765 PF00203 Ribosomal protein S19 CJO35_00770 PF00237 Ribosomal protein L22p/L17e CJO35_00775 PF00189 Ribosomal protein S3, C-terminal domain CJO35_00775 PF07650 KH domain CJO35_00780 PF00252 Ribosomal protein L16p/L10e CJO35_00785 PF00831 Ribosomal L29 protein CJO35_00790 PF00366 Ribosomal protein S17 CJO35_00795 PF00238 Ribosomal protein L14p/L23e CJO35_00800 PF00467 KOW motif CJO35_00800 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJO35_00805 PF00673 ribosomal L5P family C-terminus CJO35_00805 PF00281 Ribosomal protein L5 CJO35_00810 PF00253 Ribosomal protein S14p/S29e CJO35_00815 PF00410 Ribosomal protein S8 CJO35_00820 PF00347 Ribosomal protein L6 CJO35_00825 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJO35_00830 PF03719 Ribosomal protein S5, C-terminal domain CJO35_00830 PF00333 Ribosomal protein S5, N-terminal domain CJO35_00835 PF00327 Ribosomal protein L30p/L7e CJO35_00840 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJO35_00845 PF00344 SecY translocase CJO35_00850 PF05191 Adenylate kinase, active site lid CJO35_00855 PF00557 Metallopeptidase family M24 CJO35_00865 PF01176 Translation initiation factor 1A / IF-1 CJO35_00870 PF00444 Ribosomal protein L36 CJO35_00875 PF00416 Ribosomal protein S13/S18 CJO35_00880 PF00411 Ribosomal protein S11 CJO35_00885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJO35_00885 PF01000 RNA polymerase Rpb3/RpoA insert domain CJO35_00885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJO35_00890 PF01196 Ribosomal protein L17 CJO35_00895 PF00005 ABC transporter CJO35_00900 PF00005 ABC transporter CJO35_00905 PF02361 Cobalt transport protein CJO35_00910 PF01416 tRNA pseudouridine synthase CJO35_00915 PF00572 Ribosomal protein L13 CJO35_00920 PF00380 Ribosomal protein S9/S16 CJO35_00925 PF05163 DinB family CJO35_00935 PF01520 N-acetylmuramoyl-L-alanine amidase CJO35_00940 PF10609 NUBPL iron-transfer P-loop NTPase CJO35_00945 PF17898 Spore germination GerD central core domain CJO35_00950 PF14089 KinB-signalling pathway activation in sporulation CJO35_00955 PF01522 Polysaccharide deacetylase CJO35_00985 PF00144 Beta-lactamase CJO35_00995 PF01758 Sodium Bile acid symporter family CJO35_01000 PF17369 Family of unknown function (DUF5391) CJO35_01010 PF07075 Protein of unknown function (DUF1343) CJO35_01015 PF01915 Glycosyl hydrolase family 3 C-terminal domain CJO35_01015 PF00933 Glycosyl hydrolase family 3 N terminal domain CJO35_01020 PF00144 Beta-lactamase CJO35_01025 PF00367 phosphotransferase system, EIIB CJO35_01025 PF02378 Phosphotransferase system, EIIC CJO35_01030 PF01418 Helix-turn-helix domain, rpiR family CJO35_01030 PF01380 SIS domain CJO35_01035 PF01380 SIS domain CJO35_01040 PF04463 Protein of unknown function (DUF523) CJO35_01070 PF00491 Arginase family CJO35_01075 PF04542 Sigma-70 region 2 CJO35_01075 PF08281 Sigma-70, region 4 CJO35_01080 PF13490 Putative zinc-finger CJO35_01085 PF02457 DisA bacterial checkpoint controller nucleotide-binding CJO35_01090 PF07949 YbbR-like protein CJO35_01095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJO35_01095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJO35_01095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJO35_01095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJO35_01100 PF01380 SIS domain CJO35_01115 PF00005 ABC transporter CJO35_01120 PF00392 Bacterial regulatory proteins, gntR family CJO35_01130 PF07690 Major Facilitator Superfamily CJO35_01140 PF00664 ABC transporter transmembrane region CJO35_01140 PF00005 ABC transporter CJO35_01145 PF01323 DSBA-like thioredoxin domain CJO35_01160 PF04439 Streptomycin adenylyltransferase CJO35_01170 PF13419 Haloacid dehalogenase-like hydrolase CJO35_01175 PF00324 Amino acid permease CJO35_01180 PF03600 Citrate transporter CJO35_01185 PF03401 Tripartite tricarboxylate transporter family receptor CJO35_01190 PF12431 Transcriptional regulator CJO35_01190 PF08279 HTH domain CJO35_01190 PF00072 Response regulator receiver domain CJO35_01195 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CJO35_01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_01200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_01200 PF03466 LysR substrate binding domain CJO35_01210 PF07690 Major Facilitator Superfamily CJO35_01215 PF17334 Minor curli fiber component A CJO35_01220 PF17340 Family of unknown function (DUF5370) CJO35_01230 PF03190 Protein of unknown function, DUF255 CJO35_01255 PF12671 Putative amidase domain CJO35_01275 PF03190 Protein of unknown function, DUF255 CJO35_01285 PF07690 Major Facilitator Superfamily CJO35_01305 PF02690 Na+/Pi-cotransporter CJO35_01310 PF05360 yiaA/B two helix domain CJO35_01335 PF00892 EamA-like transporter family CJO35_01340 PF12833 Helix-turn-helix domain CJO35_01340 PF02311 AraC-like ligand binding domain CJO35_01360 PF00465 Iron-containing alcohol dehydrogenase CJO35_01365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_01365 PF00672 HAMP domain CJO35_01365 PF12729 Four helix bundle sensory module for signal transduction CJO35_01370 PF13407 Periplasmic binding protein domain CJO35_01390 PF10710 Protein of unknown function (DUF2512) CJO35_01395 PF00324 Amino acid permease CJO35_01400 PF02574 Homocysteine S-methyltransferase CJO35_01405 PF04794 YdjC-like protein CJO35_01410 PF02378 Phosphotransferase system, EIIC CJO35_01410 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJO35_01410 PF00367 phosphotransferase system, EIIB CJO35_01415 PF07739 TipAS antibiotic-recognition domain CJO35_01415 PF13411 MerR HTH family regulatory protein CJO35_01420 PF04239 Protein of unknown function (DUF421) CJO35_01425 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_01435 PF10990 Protein of unknown function (DUF2809) CJO35_01440 PF01235 Sodium:alanine symporter family CJO35_01445 PF04960 Glutaminase CJO35_01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_01455 PF00072 Response regulator receiver domain CJO35_01455 PF08664 YcbB domain CJO35_01460 PF13302 Acetyltransferase (GNAT) domain CJO35_01465 PF00905 Penicillin binding protein transpeptidase domain CJO35_01465 PF05569 BlaR1 peptidase M56 CJO35_01470 PF03965 Penicillinase repressor CJO35_01480 PF09423 PhoD-like phosphatase CJO35_01480 PF16655 PhoD-like phosphatase, N-terminal domain CJO35_01485 PF02416 mttA/Hcf106 family CJO35_01490 PF00902 Sec-independent protein translocase protein (TatC) CJO35_01495 PF00701 Dihydrodipicolinate synthetase family CJO35_01500 PF00171 Aldehyde dehydrogenase family CJO35_01505 PF07690 Major Facilitator Superfamily CJO35_01510 PF13378 Enolase C-terminal domain-like CJO35_01515 PF07729 FCD domain CJO35_01515 PF00392 Bacterial regulatory proteins, gntR family CJO35_01520 PF08666 SAF domain CJO35_01520 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJO35_01525 PF00486 Transcriptional regulatory protein, C terminal CJO35_01525 PF00072 Response regulator receiver domain CJO35_01530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_01530 PF00512 His Kinase A (phospho-acceptor) domain CJO35_01535 PF00005 ABC transporter CJO35_01550 PF13037 Domain of unknown function (DUF3898) CJO35_01550 PF13039 Protein of unknown function (DUF3900) CJO35_01555 PF16226 Domain of unknown function (DUF4885) CJO35_01560 PF01636 Phosphotransferase enzyme family CJO35_01565 PF01047 MarR family CJO35_01570 PF13193 AMP-binding enzyme C-terminal domain CJO35_01570 PF00501 AMP-binding enzyme CJO35_01590 PF07739 TipAS antibiotic-recognition domain CJO35_01590 PF13411 MerR HTH family regulatory protein CJO35_01600 PF13847 Methyltransferase domain CJO35_01600 PF03551 Transcriptional regulator PadR-like family CJO35_01610 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein CJO35_01620 PF06271 RDD family CJO35_01625 PF05225 helix-turn-helix, Psq domain CJO35_01625 PF02810 SEC-C motif CJO35_01630 PF00005 ABC transporter CJO35_01645 PF00486 Transcriptional regulatory protein, C terminal CJO35_01645 PF00072 Response regulator receiver domain CJO35_01650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_01650 PF00512 His Kinase A (phospho-acceptor) domain CJO35_01655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_01655 PF03466 LysR substrate binding domain CJO35_01660 PF14552 Tautomerase enzyme CJO35_01675 PF17118 Domain of unknown function (DUF5105) CJO35_01675 PF11611 Domain of unknown function (DUF4352) CJO35_01680 PF03606 C4-dicarboxylate anaerobic carrier CJO35_01685 PF07687 Peptidase dimerisation domain CJO35_01685 PF01546 Peptidase family M20/M25/M40 CJO35_01690 PF00583 Acetyltransferase (GNAT) family CJO35_01695 PF01425 Amidase CJO35_01700 PF01432 Peptidase family M3 CJO35_01700 PF08439 Oligopeptidase F CJO35_01705 PF04226 Transglycosylase associated protein CJO35_01715 PF02754 Cysteine-rich domain CJO35_01715 PF13183 4Fe-4S dicluster domain CJO35_01720 PF01565 FAD binding domain CJO35_01720 PF02913 FAD linked oxidases, C-terminal domain CJO35_01725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_01730 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CJO35_01735 PF02378 Phosphotransferase system, EIIC CJO35_01740 PF02056 Family 4 glycosyl hydrolase CJO35_01740 PF11975 Family 4 glycosyl hydrolase C-terminal domain CJO35_01750 PF04794 YdjC-like protein CJO35_01755 PF00704 Glycosyl hydrolases family 18 CJO35_01755 PF00041 Fibronectin type III domain CJO35_01760 PF00704 Glycosyl hydrolases family 18 CJO35_01760 PF06483 Chitinase C CJO35_01765 PF00089 Trypsin CJO35_01780 PF16244 Domain of unknown function (DUF4901) CJO35_01785 PF00581 Rhodanese-like domain CJO35_01790 PF07486 Cell Wall Hydrolase CJO35_01795 PF00296 Luciferase-like monooxygenase CJO35_01800 PF00877 NlpC/P60 family CJO35_01810 PF13732 Domain of unknown function (DUF4162) CJO35_01810 PF00005 ABC transporter CJO35_01815 PF17932 Tetracyclin repressor-like, C-terminal domain CJO35_01815 PF00440 Bacterial regulatory proteins, tetR family CJO35_01835 PF02342 TerD domain CJO35_01840 PF02342 TerD domain CJO35_01845 PF02342 TerD domain CJO35_01850 PF03741 Integral membrane protein TerC family CJO35_01865 PF14266 Putative component of 'biosynthetic module' CJO35_01870 PF05816 Toxic anion resistance protein (TelA) CJO35_01875 PF02683 Cytochrome C biogenesis protein transmembrane region CJO35_01885 PF13411 MerR HTH family regulatory protein CJO35_01890 PF07690 Major Facilitator Superfamily CJO35_01895 PF00056 lactate/malate dehydrogenase, NAD binding domain CJO35_01895 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJO35_01900 PF02652 L-lactate permease CJO35_01905 PF01810 LysE type translocator CJO35_01910 PF00324 Amino acid permease CJO35_01915 PF02540 NAD synthase CJO35_01920 PF01202 Shikimate kinase CJO35_01925 PF10127 RNA repair pathway DNA polymerase beta family CJO35_01930 PF01619 Proline dehydrogenase CJO35_01935 PF00171 Aldehyde dehydrogenase family CJO35_01940 PF00474 Sodium:solute symporter family CJO35_01945 PF17853 GGDEF-like domain CJO35_01945 PF13556 PucR C-terminal helix-turn-helix domain CJO35_01950 PF09323 Domain of unknown function (DUF1980) CJO35_01955 PF03773 Predicted permease CJO35_01960 PF05448 Acetyl xylan esterase (AXE1) CJO35_01980 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_01985 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO35_01990 PF02525 Flavodoxin-like fold CJO35_02000 PF00232 Glycosyl hydrolase family 1 CJO35_02005 PF11033 Competence protein J (ComJ) CJO35_02010 PF14040 Deoxyribonuclease NucA/NucB CJO35_02015 PF00069 Protein kinase domain CJO35_02025 PF04740 LXG domain of WXG superfamily CJO35_02030 PF01968 Hydantoinase/oxoprolinase CJO35_02030 PF05378 Hydantoinase/oxoprolinase N-terminal region CJO35_02035 PF02538 Hydantoinase B/oxoprolinase CJO35_02045 PF08402 TOBE domain CJO35_02045 PF00005 ABC transporter CJO35_02050 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_02055 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_02060 PF00668 Condensation domain CJO35_02060 PF00501 AMP-binding enzyme CJO35_02060 PF00550 Phosphopantetheine attachment site CJO35_02060 PF13193 AMP-binding enzyme C-terminal domain CJO35_02065 PF00668 Condensation domain CJO35_02065 PF13193 AMP-binding enzyme C-terminal domain CJO35_02065 PF00501 AMP-binding enzyme CJO35_02065 PF00550 Phosphopantetheine attachment site CJO35_02070 PF00975 Thioesterase domain CJO35_02070 PF00550 Phosphopantetheine attachment site CJO35_02070 PF00668 Condensation domain CJO35_02070 PF13193 AMP-binding enzyme C-terminal domain CJO35_02070 PF00501 AMP-binding enzyme CJO35_02075 PF00975 Thioesterase domain CJO35_02080 PF00892 EamA-like transporter family CJO35_02085 PF00392 Bacterial regulatory proteins, gntR family CJO35_02085 PF00155 Aminotransferase class I and II CJO35_02090 PF01648 4'-phosphopantetheinyl transferase superfamily CJO35_02095 PF00756 Putative esterase CJO35_02115 PF00005 ABC transporter CJO35_02135 PF00672 HAMP domain CJO35_02135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_02140 PF00005 ABC transporter CJO35_02145 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_02150 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO35_02155 PF00158 Sigma-54 interaction domain CJO35_02155 PF13426 PAS domain CJO35_02155 PF02954 Bacterial regulatory protein, Fis family CJO35_02160 PF00202 Aminotransferase class-III CJO35_02165 PF00324 Amino acid permease CJO35_02170 PF00491 Arginase family CJO35_02175 PF03466 LysR substrate binding domain CJO35_02175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_02180 PF02441 Flavoprotein CJO35_02185 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJO35_02235 PF14449 Pre-toxin TG CJO35_02235 PF04740 LXG domain of WXG superfamily CJO35_02255 PF06580 Histidine kinase CJO35_02255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_02255 PF02743 Cache domain CJO35_02255 PF00672 HAMP domain CJO35_02260 PF12833 Helix-turn-helix domain CJO35_02260 PF00072 Response regulator receiver domain CJO35_02265 PF13407 Periplasmic binding protein domain CJO35_02270 PF00005 ABC transporter CJO35_02275 PF02653 Branched-chain amino acid transport system / permease component CJO35_02280 PF07690 Major Facilitator Superfamily CJO35_02285 PF00583 Acetyltransferase (GNAT) family CJO35_02285 PF01047 MarR family CJO35_02290 PF08532 Beta-galactosidase trimerisation domain CJO35_02290 PF02449 Beta-galactosidase CJO35_02290 PF08533 Beta-galactosidase C-terminal domain CJO35_02300 PF02333 Phytase CJO35_02305 PF00854 POT family CJO35_02310 PF13229 Right handed beta helix region CJO35_02310 PF12708 Pectate lyase superfamily protein CJO35_02320 PF03323 Bacillus/Clostridium GerA spore germination protein CJO35_02325 PF05504 Spore germination B3/ GerAC like, C-terminal CJO35_02330 PF03845 Spore germination protein CJO35_02340 PF00005 ABC transporter CJO35_02345 PF12704 MacB-like periplasmic core domain CJO35_02345 PF02687 FtsX-like permease family CJO35_02350 PF00072 Response regulator receiver domain CJO35_02350 PF00486 Transcriptional regulatory protein, C terminal CJO35_02355 PF00512 His Kinase A (phospho-acceptor) domain CJO35_02355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_02355 PF00672 HAMP domain CJO35_02360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_02360 PF02743 Cache domain CJO35_02360 PF00672 HAMP domain CJO35_02365 PF00696 Amino acid kinase family CJO35_02365 PF13840 ACT domain CJO35_02370 PF01032 FecCD transport family CJO35_02375 PF01032 FecCD transport family CJO35_02380 PF00005 ABC transporter CJO35_02385 PF01497 Periplasmic binding protein CJO35_02390 PF07690 Major Facilitator Superfamily CJO35_02395 PF00440 Bacterial regulatory proteins, tetR family CJO35_02405 PF00881 Nitroreductase family CJO35_02410 PF03992 Antibiotic biosynthesis monooxygenase CJO35_02415 PF01022 Bacterial regulatory protein, arsR family CJO35_02420 PF00155 Aminotransferase class I and II CJO35_02420 PF00392 Bacterial regulatory proteins, gntR family CJO35_02425 PF00202 Aminotransferase class-III CJO35_02430 PF13520 Amino acid permease CJO35_02435 PF00171 Aldehyde dehydrogenase family CJO35_02440 PF00892 EamA-like transporter family CJO35_02450 PF07987 Domain of unkown function (DUF1775) CJO35_02455 PF13115 YtkA-like CJO35_02455 PF05425 Copper resistance protein D CJO35_02455 PF04234 CopC domain CJO35_02460 PF05573 NosL CJO35_02460 PF08220 DeoR-like helix-turn-helix domain CJO35_02465 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_02465 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJO35_02465 PF04324 BFD-like [2Fe-2S] binding domain CJO35_02465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO35_02470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO35_02470 PF00384 Molybdopterin oxidoreductase CJO35_02470 PF01568 Molydopterin dinucleotide binding domain CJO35_02475 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJO35_02475 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO35_02475 PF04324 BFD-like [2Fe-2S] binding domain CJO35_02475 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO35_02475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_02480 PF00355 Rieske [2Fe-2S] domain CJO35_02485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO35_02490 PF00392 Bacterial regulatory proteins, gntR family CJO35_02490 PF07729 FCD domain CJO35_02495 PF00939 Sodium:sulfate symporter transmembrane region CJO35_02500 PF07977 FabA-like domain CJO35_02505 PF07977 FabA-like domain CJO35_02510 PF01980 tRNA-methyltransferase O CJO35_02520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_02535 PF00456 Transketolase, thiamine diphosphate binding domain CJO35_02540 PF02780 Transketolase, C-terminal domain CJO35_02540 PF02779 Transketolase, pyrimidine binding domain CJO35_02550 PF03746 LamB/YcsF family CJO35_02555 PF01566 Natural resistance-associated macrophage protein CJO35_02560 PF07286 Protein of unknown function (DUF1445) CJO35_02565 PF02682 Carboxyltransferase domain, subdomain C and D CJO35_02570 PF02626 Carboxyltransferase domain, subdomain A and B CJO35_02575 PF09339 IclR helix-turn-helix domain CJO35_02575 PF01614 Bacterial transcriptional regulator CJO35_02580 PF13472 GDSL-like Lipase/Acylhydrolase family CJO35_02585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_02585 PF02378 Phosphotransferase system, EIIC CJO35_02590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_02595 PF01232 Mannitol dehydrogenase Rossmann domain CJO35_02595 PF08125 Mannitol dehydrogenase C-terminal domain CJO35_02600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_02600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_02600 PF00874 PRD domain CJO35_02600 PF05043 Mga helix-turn-helix domain CJO35_02600 PF08279 HTH domain CJO35_02620 PF16242 Pyridoxamine 5'-phosphate oxidase like CJO35_02625 PF10997 Alternate to MurJ CJO35_02630 PF03816 Cell envelope-related transcriptional attenuator domain CJO35_02635 PF12823 Domain of unknown function (DUF3817) CJO35_02645 PF01037 Lrp/AsnC ligand binding domain CJO35_02650 PF01751 Toprim domain CJO35_02650 PF01131 DNA topoisomerase CJO35_02655 PF13520 Amino acid permease CJO35_02660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO35_02660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO35_02660 PF00205 Thiamine pyrophosphate enzyme, central domain CJO35_02675 PF13302 Acetyltransferase (GNAT) domain CJO35_02680 PF01566 Natural resistance-associated macrophage protein CJO35_02685 PF04226 Transglycosylase associated protein CJO35_02690 PF00206 Lyase CJO35_02690 PF10415 Fumarase C C-terminus CJO35_02695 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CJO35_02700 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) CJO35_02705 PF12787 EcsC protein family CJO35_02715 PF07883 Cupin domain CJO35_02720 PF10685 Stress-induced bacterial acidophilic repeat motif CJO35_02720 PF00477 Small hydrophilic plant seed protein CJO35_02725 PF01594 AI-2E family transporter CJO35_02730 PF00375 Sodium:dicarboxylate symporter family CJO35_02735 PF00005 ABC transporter CJO35_02750 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CJO35_02750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO35_02750 PF02770 Acyl-CoA dehydrogenase, middle domain CJO35_02755 PF13040 Fur-regulated basic protein B CJO35_02765 PF00085 Thioredoxin CJO35_02770 PF07478 D-ala D-ala ligase C-terminus CJO35_02770 PF01820 D-ala D-ala ligase N-terminus CJO35_02775 PF01225 Mur ligase family, catalytic domain CJO35_02775 PF02875 Mur ligase family, glutamate ligase domain CJO35_02775 PF08245 Mur ligase middle domain CJO35_02780 PF12146 Serine aminopeptidase, S33 CJO35_02785 PF00270 DEAD/DEAH box helicase CJO35_02785 PF00271 Helicase conserved C-terminal domain CJO35_02790 PF03703 Bacterial PH domain CJO35_02795 PF03703 Bacterial PH domain CJO35_02800 PF01694 Rhomboid family CJO35_02810 PF00842 Alanine racemase, C-terminal domain CJO35_02810 PF01168 Alanine racemase, N-terminal domain CJO35_02815 PF01402 Ribbon-helix-helix protein, copG family CJO35_02820 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CJO35_02825 PF08678 Rsbr N terminal CJO35_02825 PF01740 STAS domain CJO35_02830 PF01740 STAS domain CJO35_02835 PF13581 Histidine kinase-like ATPase domain CJO35_02840 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain CJO35_02840 PF07228 Stage II sporulation protein E (SpoIIE) CJO35_02845 PF01740 STAS domain CJO35_02850 PF13581 Histidine kinase-like ATPase domain CJO35_02855 PF04542 Sigma-70 region 2 CJO35_02855 PF04545 Sigma-70, region 4 CJO35_02855 PF04539 Sigma-70 region 3 CJO35_02860 PF07228 Stage II sporulation protein E (SpoIIE) CJO35_02865 PF17674 HHH domain CJO35_02865 PF16921 Tex protein YqgF-like domain CJO35_02865 PF00575 S1 RNA binding domain CJO35_02865 PF09371 Tex-like protein N-terminal domain CJO35_02870 PF00440 Bacterial regulatory proteins, tetR family CJO35_02875 PF03176 MMPL family CJO35_02885 PF10263 SprT-like family CJO35_02935 PF01381 Helix-turn-helix CJO35_02940 PF00487 Fatty acid desaturase CJO35_02945 PF00313 'Cold-shock' DNA-binding domain CJO35_02950 PF00107 Zinc-binding dehydrogenase CJO35_02950 PF08240 Alcohol dehydrogenase GroES-like domain CJO35_02965 PF01047 MarR family CJO35_02970 PF00583 Acetyltransferase (GNAT) family CJO35_02975 PF04299 Putative FMN-binding domain CJO35_02985 PF01638 HxlR-like helix-turn-helix CJO35_02990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CJO35_02990 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CJO35_03000 PF03466 LysR substrate binding domain CJO35_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_03015 PF04199 Putative cyclase CJO35_03020 PF00324 Amino acid permease CJO35_03035 PF04542 Sigma-70 region 2 CJO35_03035 PF08281 Sigma-70, region 4 CJO35_03040 PF13739 Deacetylase PdaC CJO35_03040 PF11738 Protein of unknown function (DUF3298) CJO35_03045 PF01757 Acyltransferase family CJO35_03050 PF07690 Major Facilitator Superfamily CJO35_03055 PF06580 Histidine kinase CJO35_03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_03060 PF04397 LytTr DNA-binding domain CJO35_03060 PF00072 Response regulator receiver domain CJO35_03065 PF00746 LPXTG cell wall anchor motif CJO35_03065 PF10425 C-terminus of bacterial fibrinogen-binding adhesin CJO35_03065 PF04650 YSIRK type signal peptide CJO35_03065 PF17210 SdrD B-like domain CJO35_03065 PF17961 Bacterial Ig domain CJO35_03070 PF04203 Sortase domain CJO35_03075 PF00083 Sugar (and other) transporter CJO35_03115 PF00586 AIR synthase related protein, N-terminal domain CJO35_03115 PF02769 AIR synthase related protein, C-terminal domain CJO35_03120 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJO35_03125 PF00814 Glycoprotease family CJO35_03130 PF00583 Acetyltransferase (GNAT) family CJO35_03135 PF00814 Glycoprotease family CJO35_03140 PF16326 ABC transporter C-terminal domain CJO35_03140 PF12848 ABC transporter CJO35_03140 PF00005 ABC transporter CJO35_03145 PF01967 MoaC family CJO35_03150 PF06971 Putative DNA-binding protein N-terminus CJO35_03150 PF02629 CoA binding domain CJO35_03155 PF02416 mttA/Hcf106 family CJO35_03160 PF00902 Sec-independent protein translocase protein (TatC) CJO35_03165 PF14146 Domain of unknown function (DUF4305) CJO35_03170 PF02517 CPBP intramembrane metalloprotease CJO35_03175 PF00166 Chaperonin 10 Kd subunit CJO35_03180 PF00118 TCP-1/cpn60 chaperonin family CJO35_03205 PF08863 YolD-like protein CJO35_03215 PF04294 VanW like protein CJO35_03220 PF10787 Uncharacterised protein from bacillus cereus group CJO35_03230 PF02586 SOS response associated peptidase (SRAP) CJO35_03240 PF00440 Bacterial regulatory proteins, tetR family CJO35_03240 PF17933 Tetracyclin repressor-like, C-terminal domain CJO35_03245 PF00391 PEP-utilising enzyme, mobile domain CJO35_03245 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJO35_03255 PF04343 Protein of unknown function, DUF488 CJO35_03260 PF00106 short chain dehydrogenase CJO35_03265 PF00135 Carboxylesterase family CJO35_03270 PF07690 Major Facilitator Superfamily CJO35_03275 PF04012 PspA/IM30 family CJO35_03280 PF08271 TFIIB zinc-binding CJO35_03285 PF04536 TPM domain CJO35_03290 PF13421 SPFH domain-Band 7 family CJO35_03300 PF01978 Sugar-specific transcriptional regulator TrmB CJO35_03300 PF11495 Archaeal transcriptional regulator TrmB CJO35_03305 PF01810 LysE type translocator CJO35_03310 PF06803 Protein of unknown function (DUF1232) CJO35_03315 PF01098 Cell cycle protein CJO35_03320 PF01098 Cell cycle protein CJO35_03345 PF13739 Deacetylase PdaC CJO35_03345 PF01522 Polysaccharide deacetylase CJO35_03345 PF11738 Protein of unknown function (DUF3298) CJO35_03350 PF00128 Alpha amylase, catalytic domain CJO35_03350 PF09154 Domain of unknown function (DUF1939) CJO35_03355 PF00356 Bacterial regulatory proteins, lacI family CJO35_03360 PF00128 Alpha amylase, catalytic domain CJO35_03360 PF02903 Alpha amylase, N-terminal ig-like domain CJO35_03365 PF13416 Bacterial extracellular solute-binding protein CJO35_03370 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_03375 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_03380 PF06691 Protein of unknown function (DUF1189) CJO35_03385 PF03636 Glycosyl hydrolase family 65, N-terminal domain CJO35_03385 PF03633 Glycosyl hydrolase family 65, C-terminal domain CJO35_03385 PF03632 Glycosyl hydrolase family 65 central catalytic domain CJO35_03390 PF00128 Alpha amylase, catalytic domain CJO35_03390 PF16657 Maltogenic Amylase, C-terminal domain CJO35_03395 PF13419 Haloacid dehalogenase-like hydrolase CJO35_03400 PF01479 S4 domain CJO35_03400 PF00579 tRNA synthetases class I (W and Y) CJO35_03405 PF01047 MarR family CJO35_03420 PF03330 Lytic transglycolase CJO35_03425 PF07676 WD40-like Beta Propeller Repeat CJO35_03430 PF13170 Protein of unknown function (DUF4003) CJO35_03445 PF10502 Signal peptidase, peptidase S26 CJO35_03455 PF13460 NAD(P)H-binding CJO35_03460 PF12833 Helix-turn-helix domain CJO35_03465 PF00394 Multicopper oxidase CJO35_03465 PF07732 Multicopper oxidase CJO35_03465 PF07731 Multicopper oxidase CJO35_03480 PF01545 Cation efflux family CJO35_03480 PF16916 Dimerisation domain of Zinc Transporter CJO35_03485 PF17863 AAA lid domain CJO35_03485 PF07726 ATPase family associated with various cellular activities (AAA) CJO35_03490 PF01882 Protein of unknown function DUF58 CJO35_03495 PF11992 Domain of unknown function (DUF3488) CJO35_03495 PF01841 Transglutaminase-like superfamily CJO35_03495 PF13559 Domain of unknown function (DUF4129) CJO35_03500 PF02540 NAD synthase CJO35_03500 PF00958 GMP synthase C terminal domain CJO35_03500 PF00117 Glutamine amidotransferase class-I CJO35_03510 PF00860 Permease family CJO35_03520 PF13076 Fur-regulated basic protein A CJO35_03525 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CJO35_03530 PF14044 NETI protein CJO35_03535 PF00731 AIR carboxylase CJO35_03540 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CJO35_03540 PF02222 ATP-grasp domain CJO35_03545 PF10397 Adenylosuccinate lyase C-terminus CJO35_03545 PF00206 Lyase CJO35_03550 PF01259 SAICAR synthetase CJO35_03555 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CJO35_03565 PF00586 AIR synthase related protein, N-terminal domain CJO35_03565 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJO35_03565 PF02769 AIR synthase related protein, C-terminal domain CJO35_03570 PF00156 Phosphoribosyl transferase domain CJO35_03575 PF00586 AIR synthase related protein, N-terminal domain CJO35_03575 PF02769 AIR synthase related protein, C-terminal domain CJO35_03580 PF00551 Formyl transferase CJO35_03585 PF01808 AICARFT/IMPCHase bienzyme CJO35_03585 PF02142 MGS-like domain CJO35_03590 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJO35_03590 PF02844 Phosphoribosylglycinamide synthetase, N domain CJO35_03590 PF02843 Phosphoribosylglycinamide synthetase, C domain CJO35_03605 PF00067 Cytochrome P450 CJO35_03620 PF11127 Protein of unknown function (DUF2892) CJO35_03625 PF13382 Adenine deaminase C-terminal domain CJO35_03625 PF01979 Amidohydrolase family CJO35_03630 PF11258 Protein of unknown function (DUF3048) N-terminal domain CJO35_03630 PF17479 Protein of unknown function (DUF3048) C-terminal domain CJO35_03635 PF01371 Trp repressor protein CJO35_03640 PF01884 PcrB family CJO35_03645 PF13361 UvrD-like helicase C-terminal domain CJO35_03645 PF00580 UvrD/REP helicase N-terminal domain CJO35_03650 PF03120 NAD-dependent DNA ligase OB-fold domain CJO35_03650 PF01653 NAD-dependent DNA ligase adenylation domain CJO35_03650 PF00533 BRCA1 C Terminus (BRCT) domain CJO35_03650 PF12826 Helix-hairpin-helix motif CJO35_03650 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CJO35_03655 PF07537 CamS sex pheromone cAM373 precursor CJO35_03660 PF14502 Helix-turn-helix domain CJO35_03660 PF14503 YhfZ C-terminal domain CJO35_03670 PF10941 Protein of unknown function DUF2620 CJO35_03675 PF10797 Protein of unknown function CJO35_03680 PF02126 Phosphotriesterase family CJO35_03685 PF00155 Aminotransferase class I and II CJO35_03690 PF01676 Metalloenzyme superfamily CJO35_03695 PF01168 Alanine racemase, N-terminal domain CJO35_03700 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJO35_03705 PF02308 MgtC family CJO35_03710 PF00474 Sodium:solute symporter family CJO35_03715 PF02686 Glu-tRNAGln amidotransferase C subunit CJO35_03720 PF01425 Amidase CJO35_03725 PF02934 GatB/GatE catalytic domain CJO35_03725 PF02637 GatB domain CJO35_03745 PF00440 Bacterial regulatory proteins, tetR family CJO35_03750 PF00873 AcrB/AcrD/AcrF family CJO35_03760 PF13302 Acetyltransferase (GNAT) domain CJO35_03765 PF01156 Inosine-uridine preferring nucleoside hydrolase CJO35_03770 PF00781 Diacylglycerol kinase catalytic domain CJO35_03775 PF01938 TRAM domain CJO35_03775 PF05958 tRNA (Uracil-5-)-methyltransferase CJO35_03785 PF00145 C-5 cytosine-specific DNA methylase CJO35_03795 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJO35_03795 PF00367 phosphotransferase system, EIIB CJO35_03795 PF02378 Phosphotransferase system, EIIC CJO35_03800 PF00232 Glycosyl hydrolase family 1 CJO35_03805 PF03123 CAT RNA binding domain CJO35_03805 PF00874 PRD domain CJO35_03810 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_03830 PF01709 Transcriptional regulator CJO35_03835 PF01381 Helix-turn-helix CJO35_03845 PF00171 Aldehyde dehydrogenase family CJO35_03850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_03855 PF00939 Sodium:sulfate symporter transmembrane region CJO35_03860 PF00005 ABC transporter CJO35_03860 PF16326 ABC transporter C-terminal domain CJO35_03860 PF12848 ABC transporter CJO35_03865 PF02649 Type I GTP cyclohydrolase folE2 CJO35_03880 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO35_03880 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO35_03885 PF03744 6-carboxyhexanoate--CoA ligase CJO35_03890 PF00202 Aminotransferase class-III CJO35_03895 PF00155 Aminotransferase class I and II CJO35_03905 PF06968 Biotin and Thiamin Synthesis associated domain CJO35_03905 PF04055 Radical SAM superfamily CJO35_03910 PF00067 Cytochrome P450 CJO35_03920 PF13411 MerR HTH family regulatory protein CJO35_03925 PF07690 Major Facilitator Superfamily CJO35_03930 PF12848 ABC transporter CJO35_03930 PF00005 ABC transporter CJO35_03935 PF00271 Helicase conserved C-terminal domain CJO35_03935 PF00270 DEAD/DEAH box helicase CJO35_03940 PF00107 Zinc-binding dehydrogenase CJO35_03940 PF16884 N-terminal domain of oxidoreductase CJO35_03945 PF11486 Protein of unknown function (DUF3212) CJO35_03950 PF11181 Heat induced stress protein YflT CJO35_03955 PF00939 Sodium:sulfate symporter transmembrane region CJO35_03975 PF00753 Metallo-beta-lactamase superfamily CJO35_03985 PF02898 Nitric oxide synthase, oxygenase domain CJO35_03990 PF07853 Protein of unknown function (DUF1648) CJO35_03990 PF13630 SdpI/YhfL protein family CJO35_03995 PF01022 Bacterial regulatory protein, arsR family CJO35_04000 PF00708 Acylphosphatase CJO35_04005 PF03473 MOSC domain CJO35_04005 PF03475 3-alpha domain CJO35_04010 PF11121 Protein of unknown function (DUF2639) CJO35_04020 PF00557 Metallopeptidase family M24 CJO35_04025 PF00884 Sulfatase CJO35_04030 PF09350 Domain of unknown function (DUF1992) CJO35_04035 PF01235 Sodium:alanine symporter family CJO35_04040 PF00367 phosphotransferase system, EIIB CJO35_04040 PF02378 Phosphotransferase system, EIIC CJO35_04045 PF00128 Alpha amylase, catalytic domain CJO35_04045 PF16657 Maltogenic Amylase, C-terminal domain CJO35_04050 PF00392 Bacterial regulatory proteins, gntR family CJO35_04050 PF07702 UTRA domain CJO35_04075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO35_04080 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_04085 PF01370 NAD dependent epimerase/dehydratase family CJO35_04095 PF00535 Glycosyl transferase family 2 CJO35_04100 PF13181 Tetratricopeptide repeat CJO35_04100 PF00535 Glycosyl transferase family 2 CJO35_04105 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO35_04110 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO35_04110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO35_04115 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJO35_04115 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJO35_04115 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJO35_04125 PF01638 HxlR-like helix-turn-helix CJO35_04130 PF00881 Nitroreductase family CJO35_04135 PF00149 Calcineurin-like phosphoesterase CJO35_04135 PF02872 5'-nucleotidase, C-terminal domain CJO35_04140 PF01965 DJ-1/PfpI family CJO35_04145 PF06569 Protein of unknown function (DUF1128) CJO35_04150 PF01235 Sodium:alanine symporter family CJO35_04155 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJO35_04165 PF03631 Virulence factor BrkB CJO35_04170 PF07690 Major Facilitator Superfamily CJO35_04180 PF01699 Sodium/calcium exchanger protein CJO35_04185 PF14167 YfkD-like protein CJO35_04190 PF04055 Radical SAM superfamily CJO35_04190 PF08756 YfkB-like domain CJO35_04200 PF01522 Polysaccharide deacetylase CJO35_04205 PF00465 Iron-containing alcohol dehydrogenase CJO35_04215 PF01544 CorA-like Mg2+ transporter protein CJO35_04220 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO35_04225 PF01938 TRAM domain CJO35_04225 PF05958 tRNA (Uracil-5-)-methyltransferase CJO35_04255 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CJO35_04260 PF10925 Protein of unknown function (DUF2680) CJO35_04265 PF07690 Major Facilitator Superfamily CJO35_04270 PF02378 Phosphotransferase system, EIIC CJO35_04270 PF00367 phosphotransferase system, EIIB CJO35_04275 PF00874 PRD domain CJO35_04275 PF03123 CAT RNA binding domain CJO35_04285 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CJO35_04290 PF00361 Proton-conducting membrane transporter CJO35_04290 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJO35_04295 PF10057 Uncharacterized conserved protein (DUF2294) CJO35_04305 PF00676 Dehydrogenase E1 component CJO35_04310 PF02779 Transketolase, pyrimidine binding domain CJO35_04310 PF02780 Transketolase, C-terminal domain CJO35_04315 PF00364 Biotin-requiring enzyme CJO35_04315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO35_04315 PF02817 e3 binding domain CJO35_04320 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_04320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO35_04325 PF01590 GAF domain CJO35_04325 PF02954 Bacterial regulatory protein, Fis family CJO35_04325 PF00158 Sigma-54 interaction domain CJO35_04330 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CJO35_04335 PF11975 Family 4 glycosyl hydrolase C-terminal domain CJO35_04335 PF02056 Family 4 glycosyl hydrolase CJO35_04340 PF01380 SIS domain CJO35_04340 PF01418 Helix-turn-helix domain, rpiR family CJO35_04345 PF02378 Phosphotransferase system, EIIC CJO35_04345 PF00367 phosphotransferase system, EIIB CJO35_04360 PF01638 HxlR-like helix-turn-helix CJO35_04365 PF07681 DoxX CJO35_04370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_04375 PF04616 Glycosyl hydrolases family 43 CJO35_04375 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CJO35_04380 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CJO35_04380 PF04616 Glycosyl hydrolases family 43 CJO35_04385 PF02311 AraC-like ligand binding domain CJO35_04385 PF12833 Helix-turn-helix domain CJO35_04390 PF13416 Bacterial extracellular solute-binding protein CJO35_04400 PF00293 NUDIX domain CJO35_04405 PF12867 DinB superfamily CJO35_04410 PF12867 DinB superfamily CJO35_04415 PF03706 Lysylphosphatidylglycerol synthase TM region CJO35_04415 PF09924 Uncharacterised conserved protein (DUF2156) CJO35_04420 PF02567 Phenazine biosynthesis-like protein CJO35_04425 PF00881 Nitroreductase family CJO35_04430 PF14151 YfhD-like protein CJO35_04445 PF01370 NAD dependent epimerase/dehydratase family CJO35_04445 PF08338 Domain of unknown function (DUF1731) CJO35_04450 PF02631 RecX family CJO35_04455 PF08838 Protein of unknown function (DUF1811) CJO35_04465 PF08176 Small acid-soluble spore protein K family CJO35_04470 PF14043 WVELL protein CJO35_04480 PF00535 Glycosyl transferase family 2 CJO35_04490 PF09586 Bacterial membrane protein YfhO CJO35_04495 PF04307 LexA-binding, inner membrane-associated putative hydrolase CJO35_04500 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO35_04500 PF14815 NUDIX domain CJO35_04520 PF14182 YgaB-like protein CJO35_04525 PF04167 Protein of unknown function (DUF402) CJO35_04530 PF00664 ABC transporter transmembrane region CJO35_04530 PF00005 ABC transporter CJO35_04535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_04535 PF00005 ABC transporter CJO35_04540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_04540 PF00005 ABC transporter CJO35_04545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO35_04560 PF06081 Aromatic acid exporter family member 1 CJO35_04565 PF00202 Aminotransferase class-III CJO35_04570 PF00578 AhpC/TSA family CJO35_04575 PF01475 Ferric uptake regulator family CJO35_04580 PF11023 Zinc-ribbon containing domain CJO35_04585 PF18576 Helix-turn-helix domain CJO35_04585 PF14540 Nucleotidyltransferase-like CJO35_04685 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_04720 PF01510 N-acetylmuramoyl-L-alanine amidase CJO35_04720 PF01471 Putative peptidoglycan binding domain CJO35_04730 PF14449 Pre-toxin TG CJO35_04730 PF04740 LXG domain of WXG superfamily CJO35_04735 PF13181 Tetratricopeptide repeat CJO35_04735 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_04740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO35_04740 PF03129 Anticodon binding domain CJO35_04740 PF02824 TGS domain CJO35_04740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO35_04750 PF01487 Type I 3-dehydroquinase CJO35_04755 PF01964 Radical SAM ThiC family CJO35_04755 PF13667 ThiC-associated domain CJO35_04760 PF00005 ABC transporter CJO35_04765 PF09084 NMT1/THI5 like CJO35_04770 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_04775 PF00296 Luciferase-like monooxygenase CJO35_04785 PF01381 Helix-turn-helix CJO35_04795 PF13732 Domain of unknown function (DUF4162) CJO35_04795 PF00005 ABC transporter CJO35_04815 PF00253 Ribosomal protein S14p/S29e CJO35_04830 PF08331 Domain of unknown function (DUF1730) CJO35_04835 PF12671 Putative amidase domain CJO35_04840 PF00588 SpoU rRNA Methylase family CJO35_04845 PF13171 Protein of unknown function (DUF4004) CJO35_04850 PF04519 Polymer-forming cytoskeletal CJO35_04860 PF06798 PrkA serine protein kinase C-terminal domain CJO35_04860 PF08298 PrkA AAA domain CJO35_04865 PF04285 Protein of unknown function (DUF444) CJO35_04875 PF07690 Major Facilitator Superfamily CJO35_04880 PF03358 NADPH-dependent FMN reductase CJO35_04900 PF00005 ABC transporter CJO35_04905 PF00005 ABC transporter CJO35_04910 PF12679 ABC-2 family transporter protein CJO35_04915 PF00313 'Cold-shock' DNA-binding domain CJO35_04920 PF00005 ABC transporter CJO35_04920 PF09383 NIL domain CJO35_04925 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_04930 PF03180 NLPA lipoprotein CJO35_04935 PF00375 Sodium:dicarboxylate symporter family CJO35_04945 PF00326 Prolyl oligopeptidase family CJO35_04950 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CJO35_04960 PF07875 Coat F domain CJO35_04965 PF00989 PAS fold CJO35_04965 PF13426 PAS domain CJO35_04965 PF13188 PAS domain CJO35_04965 PF00512 His Kinase A (phospho-acceptor) domain CJO35_04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_04970 PF00565 Staphylococcal nuclease homologue CJO35_04970 PF00149 Calcineurin-like phosphoesterase CJO35_04970 PF00746 LPXTG cell wall anchor motif CJO35_04970 PF02872 5'-nucleotidase, C-terminal domain CJO35_04975 PF04203 Sortase domain CJO35_04980 PF01479 S4 domain CJO35_04980 PF00849 RNA pseudouridylate synthase CJO35_04985 PF17326 Family of unknown function (DUF5365) CJO35_04990 PF00571 CBS domain CJO35_04995 PF13419 Haloacid dehalogenase-like hydrolase CJO35_05000 PF00583 Acetyltransferase (GNAT) family CJO35_05000 PF00795 Carbon-nitrogen hydrolase CJO35_05005 PF12848 ABC transporter CJO35_05005 PF16326 ABC transporter C-terminal domain CJO35_05005 PF00005 ABC transporter CJO35_05015 PF01226 Formate/nitrite transporter CJO35_05020 PF03547 Membrane transport protein CJO35_05025 PF00107 Zinc-binding dehydrogenase CJO35_05025 PF08240 Alcohol dehydrogenase GroES-like domain CJO35_05030 PF04309 Glycerol-3-phosphate responsive antiterminator CJO35_05035 PF00230 Major intrinsic protein CJO35_05040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO35_05040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO35_05045 PF01266 FAD dependent oxidoreductase CJO35_05045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CJO35_05050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJO35_05050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJO35_05050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJO35_05050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJO35_05065 PF13185 GAF domain CJO35_05065 PF07730 Histidine kinase CJO35_05070 PF00196 Bacterial regulatory proteins, luxR family CJO35_05070 PF00072 Response regulator receiver domain CJO35_05075 PF03358 NADPH-dependent FMN reductase CJO35_05080 PF14148 YhdB-like protein CJO35_05085 PF13028 Protein of unknown function (DUF3889) CJO35_05090 PF02082 Transcriptional regulator CJO35_05095 PF00042 Globin CJO35_05095 PF00175 Oxidoreductase NAD-binding domain CJO35_05095 PF00970 Oxidoreductase FAD-binding domain CJO35_05100 PF04293 SpoVR like protein CJO35_05105 PF00877 NlpC/P60 family CJO35_05105 PF01476 LysM domain CJO35_05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_05110 PF03466 LysR substrate binding domain CJO35_05115 PF00285 Citrate synthase, C-terminal domain CJO35_05120 PF07995 Glucose / Sorbosone dehydrogenase CJO35_05130 PF00209 Sodium:neurotransmitter symporter family CJO35_05140 PF06445 GyrI-like small molecule binding domain CJO35_05140 PF12833 Helix-turn-helix domain CJO35_05145 PF00392 Bacterial regulatory proteins, gntR family CJO35_05145 PF00155 Aminotransferase class I and II CJO35_05155 PF17453 Sigma-M inhibitor CJO35_05160 PF13791 Sigma factor regulator C-terminal CJO35_05160 PF13800 Sigma factor regulator N-terminal CJO35_05165 PF04542 Sigma-70 region 2 CJO35_05165 PF08281 Sigma-70, region 4 CJO35_05170 PF07883 Cupin domain CJO35_05180 PF01553 Acyltransferase CJO35_05185 PF05656 Protein of unknown function (DUF805) CJO35_05195 PF00440 Bacterial regulatory proteins, tetR family CJO35_05200 PF01595 Cyclin M transmembrane N-terminal domain CJO35_05200 PF03471 Transporter associated domain CJO35_05200 PF00571 CBS domain CJO35_05205 PF13411 MerR HTH family regulatory protein CJO35_05210 PF03471 Transporter associated domain CJO35_05210 PF00571 CBS domain CJO35_05210 PF01595 Cyclin M transmembrane N-terminal domain CJO35_05225 PF05036 Sporulation related domain CJO35_05225 PF01520 N-acetylmuramoyl-L-alanine amidase CJO35_05230 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJO35_05235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJO35_05240 PF03009 Glycerophosphoryl diester phosphodiesterase family CJO35_05245 PF17444 Uncharacterized YhdX-like CJO35_05250 PF00924 Mechanosensitive ion channel CJO35_05255 PF02146 Sir2 family CJO35_05265 PF01522 Polysaccharide deacetylase CJO35_05270 PF01063 Amino-transferase class IV CJO35_05275 PF03553 Na+/H+ antiporter family CJO35_05280 PF01263 Aldose 1-epimerase CJO35_05285 PF16302 Domain of unknown function (DUF4944) CJO35_05305 PF00582 Universal stress protein family CJO35_05310 PF00005 ABC transporter CJO35_05310 PF00664 ABC transporter transmembrane region CJO35_05315 PF00664 ABC transporter transmembrane region CJO35_05315 PF00005 ABC transporter CJO35_05320 PF13460 NAD(P)H-binding CJO35_05325 PF00269 Small, acid-soluble spore proteins, alpha/beta type CJO35_05335 PF00005 ABC transporter CJO35_05335 PF17912 MalK OB fold domain CJO35_05335 PF03459 TOBE domain CJO35_05340 PF13556 PucR C-terminal helix-turn-helix domain CJO35_05345 PF17277 Family of unknown function (DUF5342) CJO35_05350 PF14398 YheC/D like ATP-grasp CJO35_05355 PF14398 YheC/D like ATP-grasp CJO35_05360 PF04286 Protein of unknown function (DUF445) CJO35_05365 PF06133 Control of competence regulator ComK, YlbF/YmcA CJO35_05380 PF04055 Radical SAM superfamily CJO35_05385 PF00999 Sodium/hydrogen exchanger family CJO35_05390 PF02080 TrkA-C domain CJO35_05400 PF00378 Enoyl-CoA hydratase/isomerase CJO35_05405 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_05415 PF14120 YhzD-like protein CJO35_05420 PF00005 ABC transporter CJO35_05420 PF13732 Domain of unknown function (DUF4162) CJO35_05430 PF00149 Calcineurin-like phosphoesterase CJO35_05435 PF13514 AAA domain CJO35_05440 PF01966 HD domain CJO35_05445 PF14147 Sporulation protein YhaL CJO35_05455 PF09680 Family of unknown function CJO35_05470 PF11667 Putative zincin peptidase CJO35_05475 PF08963 Protein of unknown function (DUF1878) CJO35_05480 PF01047 MarR family CJO35_05485 PF12732 YtxH-like protein CJO35_05495 PF17099 Tryptophan transporter TrpP CJO35_05500 PF00266 Aminotransferase class-V CJO35_05505 PF01230 HIT domain CJO35_05515 PF00005 ABC transporter CJO35_05520 PF05975 Bacterial ABC transporter protein EcsB CJO35_05525 PF12787 EcsC protein family CJO35_05530 PF07687 Peptidase dimerisation domain CJO35_05530 PF01546 Peptidase family M20/M25/M40 CJO35_05540 PF03992 Antibiotic biosynthesis monooxygenase CJO35_05545 PF00905 Penicillin binding protein transpeptidase domain CJO35_05545 PF00912 Transglycosylase CJO35_05550 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJO35_05565 PF00440 Bacterial regulatory proteins, tetR family CJO35_05565 PF17932 Tetracyclin repressor-like, C-terminal domain CJO35_05575 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJO35_05575 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJO35_05580 PF05343 M42 glutamyl aminopeptidase CJO35_05590 PF00375 Sodium:dicarboxylate symporter family CJO35_05595 PF14149 YhfH-like protein CJO35_05600 PF12706 Beta-lactamase superfamily domain CJO35_05605 PF10437 Bacterial lipoate protein ligase C-terminus CJO35_05605 PF03099 Biotin/lipoate A/B protein ligase family CJO35_05610 PF13193 AMP-binding enzyme C-terminal domain CJO35_05610 PF00501 AMP-binding enzyme CJO35_05620 PF07883 Cupin domain CJO35_05620 PF01381 Helix-turn-helix CJO35_05635 PF01435 Peptidase family M48 CJO35_05635 PF16491 CAAX prenyl protease N-terminal, five membrane helices CJO35_05645 PF00892 EamA-like transporter family CJO35_05650 PF01497 Periplasmic binding protein CJO35_05655 PF01032 FecCD transport family CJO35_05660 PF01032 FecCD transport family CJO35_05665 PF00300 Histidine phosphatase superfamily (branch 1) CJO35_05670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_05675 PF01266 FAD dependent oxidoreductase CJO35_05675 PF00355 Rieske [2Fe-2S] domain CJO35_05685 PF08858 IDEAL domain CJO35_05690 PF06338 ComK protein CJO35_05700 PF09335 SNARE associated Golgi protein CJO35_05705 PF10502 Signal peptidase, peptidase S26 CJO35_05710 PF00082 Subtilase family CJO35_05720 PF17853 GGDEF-like domain CJO35_05720 PF13556 PucR C-terminal helix-turn-helix domain CJO35_05720 PF07905 Purine catabolism regulatory protein-like family CJO35_05730 PF01979 Amidohydrolase family CJO35_05740 PF07883 Cupin domain CJO35_05740 PF05899 Protein of unknown function (DUF861) CJO35_05745 PF02615 Malate/L-lactate dehydrogenase CJO35_05750 PF02615 Malate/L-lactate dehydrogenase CJO35_05755 PF02629 CoA binding domain CJO35_05755 PF00549 CoA-ligase CJO35_05760 PF06545 Protein of unknown function (DUF1116) CJO35_05770 PF00696 Amino acid kinase family CJO35_05775 PF07690 Major Facilitator Superfamily CJO35_05785 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_05825 PF02056 Family 4 glycosyl hydrolase CJO35_05825 PF11975 Family 4 glycosyl hydrolase C-terminal domain CJO35_05830 PF05145 Transition state regulatory protein AbrB CJO35_05835 PF11007 Spore coat associated protein JA (CotJA) CJO35_05840 PF12652 CotJB protein CJO35_05845 PF05067 Manganese containing catalase CJO35_05850 PF13193 AMP-binding enzyme C-terminal domain CJO35_05850 PF00501 AMP-binding enzyme CJO35_05855 PF07690 Major Facilitator Superfamily CJO35_05865 PF00512 His Kinase A (phospho-acceptor) domain CJO35_05865 PF00989 PAS fold CJO35_05865 PF16736 Single Cache-like CJO35_05865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_05870 PF00486 Transcriptional regulatory protein, C terminal CJO35_05870 PF00072 Response regulator receiver domain CJO35_05875 PF02915 Rubrerythrin CJO35_05885 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_05890 PF12705 PD-(D/E)XK nuclease superfamily CJO35_05895 PF13361 UvrD-like helicase C-terminal domain CJO35_05895 PF00580 UvrD/REP helicase N-terminal domain CJO35_05895 PF12705 PD-(D/E)XK nuclease superfamily CJO35_05900 PF12320 Type 5 capsule protein repressor C-terminal domain CJO35_05900 PF00149 Calcineurin-like phosphoesterase CJO35_05905 PF13476 AAA domain CJO35_05910 PF10676 Spore germination protein gerPA/gerPF CJO35_05915 PF10970 Spore germination protein GerPE CJO35_05925 PF10737 Spore germination protein GerPC CJO35_05930 PF10803 Spore germination GerPB CJO35_05935 PF10676 Spore germination protein gerPA/gerPF CJO35_05940 PF12650 Domain of unknown function (DUF3784) CJO35_05945 PF09388 Spo0E like sporulation regulatory protein CJO35_05950 PF08757 CotH kinase protein CJO35_05960 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO35_05965 PF03193 RsgA GTPase CJO35_05970 PF07457 Protein of unknown function (DUF1516) CJO35_05975 PF10949 Protein of unknown function (DUF2777) CJO35_05980 PF00733 Asparagine synthase CJO35_05980 PF13537 Glutamine amidotransferase domain CJO35_05985 PF00909 Ammonium Transporter Family CJO35_05990 PF00543 Nitrogen regulatory protein P-II CJO35_05995 PF01554 MatE CJO35_06000 PF02311 AraC-like ligand binding domain CJO35_06000 PF12833 Helix-turn-helix domain CJO35_06010 PF00356 Bacterial regulatory proteins, lacI family CJO35_06015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO35_06015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO35_06030 PF03323 Bacillus/Clostridium GerA spore germination protein CJO35_06035 PF01810 LysE type translocator CJO35_06040 PF00392 Bacterial regulatory proteins, gntR family CJO35_06040 PF00155 Aminotransferase class I and II CJO35_06045 PF00202 Aminotransferase class-III CJO35_06050 PF00282 Pyridoxal-dependent decarboxylase conserved domain CJO35_06055 PF04183 IucA / IucC family CJO35_06055 PF06276 Ferric iron reductase FhuF-like transporter CJO35_06065 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CJO35_06070 PF06276 Ferric iron reductase FhuF-like transporter CJO35_06070 PF04183 IucA / IucC family CJO35_06075 PF13673 Acetyltransferase (GNAT) domain CJO35_06085 PF08279 HTH domain CJO35_06085 PF13280 WYL domain CJO35_06090 PF02607 B12 binding domain CJO35_06090 PF00809 Pterin binding enzyme CJO35_06090 PF02574 Homocysteine S-methyltransferase CJO35_06090 PF02965 Vitamin B12 dependent methionine synthase, activation domain CJO35_06090 PF02310 B12 binding domain CJO35_06095 PF02219 Methylenetetrahydrofolate reductase CJO35_06095 PF02574 Homocysteine S-methyltransferase CJO35_06100 PF04461 Protein of unknown function (DUF520) CJO35_06105 PF13509 S1 domain CJO35_06105 PF17783 CvfB-like winged helix domain CJO35_06120 PF02645 Uncharacterised protein, DegV family COG1307 CJO35_06125 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CJO35_06125 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CJO35_06130 PF12690 Intracellular proteinase inhibitor CJO35_06135 PF00478 IMP dehydrogenase / GMP reductase domain CJO35_06140 PF12758 Protein of unknown function (DUF3813) CJO35_06150 PF00326 Prolyl oligopeptidase family CJO35_06155 PF01883 Iron-sulfur cluster assembly protein CJO35_06165 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJO35_06165 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJO35_06170 PF01960 ArgJ family CJO35_06175 PF00696 Amino acid kinase family CJO35_06180 PF00202 Aminotransferase class-III CJO35_06185 PF00117 Glutamine amidotransferase class-I CJO35_06185 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJO35_06190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO35_06190 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJO35_06195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJO35_06195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJO35_06200 PF02673 Bacitracin resistance protein BacA CJO35_06205 PF14168 YjzC-like protein CJO35_06225 PF02608 ABC transporter substrate-binding protein PnrA-like CJO35_06230 PF10815 ComZ CJO35_06240 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJO35_06240 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJO35_06245 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO35_06245 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO35_06250 PF10026 Predicted Zn-dependent protease (DUF2268) CJO35_06255 PF00005 ABC transporter CJO35_06255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_06260 PF00005 ABC transporter CJO35_06260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_06265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO35_06270 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_06275 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO35_06275 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_06285 PF02441 Flavoprotein CJO35_06295 PF12227 Protein of unknown function (DUF3603) CJO35_06300 PF00579 tRNA synthetases class I (W and Y) CJO35_06310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO35_06315 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_06320 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO35_06320 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_06325 PF00005 ABC transporter CJO35_06325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_06330 PF00005 ABC transporter CJO35_06330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_06335 PF13508 Acetyltransferase (GNAT) domain CJO35_06340 PF03960 ArsC family CJO35_06345 PF03741 Integral membrane protein TerC family CJO35_06350 PF05389 Negative regulator of genetic competence (MecA) CJO35_06365 PF01970 Tripartite tricarboxylate transporter TctA family CJO35_06370 PF00072 Response regulator receiver domain CJO35_06370 PF12431 Transcriptional regulator CJO35_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_06375 PF00989 PAS fold CJO35_06375 PF17203 Single cache domain 3 CJO35_06375 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CJO35_06380 PF06054 Competence protein CoiA-like family CJO35_06385 PF01432 Peptidase family M3 CJO35_06385 PF08439 Oligopeptidase F CJO35_06400 PF01152 Bacterial-like globin CJO35_06405 PF01464 Transglycosylase SLT domain CJO35_06410 PF01928 CYTH domain CJO35_06420 PF04607 Region found in RelA / SpoT proteins CJO35_06425 PF01513 ATP-NAD kinase CJO35_06430 PF00849 RNA pseudouridylate synthase CJO35_06435 PF00149 Calcineurin-like phosphoesterase CJO35_06445 PF00999 Sodium/hydrogen exchanger family CJO35_06445 PF02254 TrkA-N domain CJO35_06445 PF02080 TrkA-C domain CJO35_06450 PF03070 TENA/THI-4/PQQC family CJO35_06455 PF02581 Thiamine monophosphate synthase CJO35_06460 PF01266 FAD dependent oxidoreductase CJO35_06465 PF02597 ThiS family CJO35_06470 PF05690 Thiazole biosynthesis protein ThiG CJO35_06475 PF00899 ThiF family CJO35_06480 PF08543 Phosphomethylpyrimidine kinase CJO35_06490 PF14153 Spore coat protein CotO CJO35_06495 PF10612 Spore coat protein Z CJO35_06500 PF10612 Spore coat protein Z CJO35_06505 PF07552 Spore Coat Protein X and V domain CJO35_06515 PF07552 Spore Coat Protein X and V domain CJO35_06520 PF07098 Protein of unknown function (DUF1360) CJO35_06535 PF14069 Stage VI sporulation protein F CJO35_06540 PF13361 UvrD-like helicase C-terminal domain CJO35_06540 PF00580 UvrD/REP helicase N-terminal domain CJO35_06550 PF09335 SNARE associated Golgi protein CJO35_06555 PF16363 GDP-mannose 4,6 dehydratase CJO35_06560 PF00483 Nucleotidyl transferase CJO35_06565 PF04138 GtrA-like protein CJO35_06570 PF13673 Acetyltransferase (GNAT) domain CJO35_06580 PF00756 Putative esterase CJO35_06600 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO35_06605 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO35_06630 PF04616 Glycosyl hydrolases family 43 CJO35_06650 PF12464 Maltose acetyltransferase CJO35_06650 PF14602 Hexapeptide repeat of succinyl-transferase CJO35_06660 PF03466 LysR substrate binding domain CJO35_06660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_06665 PF00175 Oxidoreductase NAD-binding domain CJO35_06665 PF00667 FAD binding domain CJO35_06665 PF00258 Flavodoxin CJO35_06670 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO35_06670 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO35_06675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_06675 PF03466 LysR substrate binding domain CJO35_06680 PF00892 EamA-like transporter family CJO35_06685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_06690 PF16800 IseA DL-endopeptidase inhibitor CJO35_06695 PF01476 LysM domain CJO35_06695 PF06725 3D domain CJO35_06700 PF07690 Major Facilitator Superfamily CJO35_06705 PF00440 Bacterial regulatory proteins, tetR family CJO35_06720 PF04634 Protein of unknown function, DUF600 CJO35_06730 PF05908 Poly-gamma-glutamate hydrolase CJO35_06735 PF06114 IrrE N-terminal-like domain CJO35_06740 PF01381 Helix-turn-helix CJO35_06760 PF01695 IstB-like ATP binding protein CJO35_06770 PF17356 Phage-like element PBSX protein XtrA CJO35_06775 PF08281 Sigma-70, region 4 CJO35_06780 PF03592 Terminase small subunit CJO35_06780 PF10668 Phage terminase small subunit CJO35_06785 PF04466 Phage terminase large subunit CJO35_06785 PF17288 Terminase RNAseH like domain CJO35_06790 PF04860 Phage portal protein CJO35_06795 PF14550 Putative phage serine protease XkdF CJO35_06800 PF05065 Phage capsid family CJO35_06805 PF11436 Protein of unknown function (DUF3199) CJO35_06810 PF12206 Domain of unknown function (DUF3599) CJO35_06815 PF04883 Bacteriophage HK97-gp10, putative tail-component CJO35_06830 PF17481 Phage tail sheath protein beta-sandwich domain CJO35_06830 PF17482 Phage tail sheath C-terminal domain CJO35_06830 PF04984 Phage tail sheath protein subtilisin-like domain CJO35_06835 PF09393 Phage tail tube protein CJO35_06840 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC CJO35_06855 PF01476 LysM domain CJO35_06865 PF10844 Protein of unknown function (DUF2577) CJO35_06870 PF10934 Protein of unknown function (DUF2634) CJO35_06875 PF04865 Baseplate J-like protein CJO35_06880 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) CJO35_06900 PF10779 Haemolysin XhlA CJO35_06905 PF04688 SPP1 phage holin CJO35_06910 PF01510 N-acetylmuramoyl-L-alanine amidase CJO35_06910 PF01471 Putative peptidoglycan binding domain CJO35_06915 PF00392 Bacterial regulatory proteins, gntR family CJO35_06915 PF07729 FCD domain CJO35_06920 PF00107 Zinc-binding dehydrogenase CJO35_06920 PF08240 Alcohol dehydrogenase GroES-like domain CJO35_06925 PF03786 D-mannonate dehydratase (UxuA) CJO35_06930 PF00106 short chain dehydrogenase CJO35_06935 PF00107 Zinc-binding dehydrogenase CJO35_06935 PF08240 Alcohol dehydrogenase GroES-like domain CJO35_06940 PF07690 Major Facilitator Superfamily CJO35_06945 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system CJO35_06950 PF14171 Toxin SpoIISA, type II toxin-antitoxin system CJO35_06955 PF01384 Phosphate transporter family CJO35_06960 PF01865 Protein of unknown function DUF47 CJO35_06970 PF04854 Protein of unknown function, DUF624 CJO35_06975 PF02743 Cache domain CJO35_06975 PF00672 HAMP domain CJO35_06975 PF06580 Histidine kinase CJO35_06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_06980 PF00072 Response regulator receiver domain CJO35_06980 PF12833 Helix-turn-helix domain CJO35_06985 PF13416 Bacterial extracellular solute-binding protein CJO35_06990 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_06995 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_07000 PF07470 Glycosyl Hydrolase Family 88 CJO35_07005 PF12833 Helix-turn-helix domain CJO35_07010 PF13472 GDSL-like Lipase/Acylhydrolase family CJO35_07015 PF09224 Domain of unknown function (DUF1961) CJO35_07020 PF04854 Protein of unknown function, DUF624 CJO35_07025 PF18370 Rhamnogalacturonan I lyases beta-sheet domain CJO35_07035 PF13472 GDSL-like Lipase/Acylhydrolase family CJO35_07040 PF18370 Rhamnogalacturonan I lyases beta-sheet domain CJO35_07040 PF01839 FG-GAP repeat CJO35_07045 PF00248 Aldo/keto reductase family CJO35_07050 PF00657 GDSL-like Lipase/Acylhydrolase CJO35_07055 PF08532 Beta-galactosidase trimerisation domain CJO35_07055 PF08533 Beta-galactosidase C-terminal domain CJO35_07055 PF02449 Beta-galactosidase CJO35_07065 PF01547 Bacterial extracellular solute-binding protein CJO35_07070 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_07075 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_07080 PF13520 Amino acid permease CJO35_07085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_07095 PF13180 PDZ domain CJO35_07100 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJO35_07100 PF03807 NADP oxidoreductase coenzyme F420-dependent CJO35_07105 PF04951 D-aminopeptidase CJO35_07110 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_07115 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_07115 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO35_07120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_07120 PF00005 ABC transporter CJO35_07125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO35_07130 PF17676 LD-carboxypeptidase C-terminal domain CJO35_07130 PF02016 LD-carboxypeptidase N-terminal domain CJO35_07135 PF13378 Enolase C-terminal domain-like CJO35_07135 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO35_07140 PF00877 NlpC/P60 family CJO35_07145 PF00005 ABC transporter CJO35_07145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_07155 PF03061 Thioesterase superfamily CJO35_07190 PF00893 Small Multidrug Resistance protein CJO35_07195 PF00893 Small Multidrug Resistance protein CJO35_07200 PF01842 ACT domain CJO35_07200 PF00551 Formyl transferase CJO35_07205 PF01472 PUA domain CJO35_07205 PF00696 Amino acid kinase family CJO35_07210 PF00171 Aldehyde dehydrogenase family CJO35_07215 PF02566 OsmC-like protein CJO35_07220 PF01047 MarR family CJO35_07225 PF02566 OsmC-like protein CJO35_07235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJO35_07240 PF00300 Histidine phosphatase superfamily (branch 1) CJO35_07255 PF08267 Cobalamin-independent synthase, N-terminal domain CJO35_07255 PF01717 Cobalamin-independent synthase, Catalytic domain CJO35_07260 PF00082 Subtilase family CJO35_07265 PF11132 Transcriptional regulator protein (SplA) CJO35_07270 PF01769 Divalent cation transporter CJO35_07270 PF00571 CBS domain CJO35_07270 PF03448 MgtE intracellular N domain CJO35_07285 PF06114 IrrE N-terminal-like domain CJO35_07295 PF01381 Helix-turn-helix CJO35_07320 PF01381 Helix-turn-helix CJO35_07325 PF17448 Uncharacterized YqaH-like CJO35_07345 PF07261 Replication initiation and membrane attachment CJO35_07350 PF01695 IstB-like ATP binding protein CJO35_07370 PF17356 Phage-like element PBSX protein XtrA CJO35_07450 PF10668 Phage terminase small subunit CJO35_07455 PF17288 Terminase RNAseH like domain CJO35_07455 PF04466 Phage terminase large subunit CJO35_07560 PF10779 Haemolysin XhlA CJO35_07565 PF04688 SPP1 phage holin CJO35_07570 PF01183 Glycosyl hydrolases family 25 CJO35_07570 PF08239 Bacterial SH3 domain CJO35_07575 PF07883 Cupin domain CJO35_07580 PF02915 Rubrerythrin CJO35_07585 PF04239 Protein of unknown function (DUF421) CJO35_07590 PF13411 MerR HTH family regulatory protein CJO35_07605 PF01047 MarR family CJO35_07610 PF01068 ATP dependent DNA ligase domain CJO35_07615 PF02735 Ku70/Ku80 beta-barrel domain CJO35_07620 PF03707 Bacterial signalling protein N terminal repeat CJO35_07620 PF00563 EAL domain CJO35_07620 PF00990 Diguanylate cyclase, GGDEF domain CJO35_07625 PF09335 SNARE associated Golgi protein CJO35_07630 PF03741 Integral membrane protein TerC family CJO35_07635 PF04542 Sigma-70 region 2 CJO35_07640 PF12791 Anti-sigma factor N-terminus CJO35_07645 PF00269 Small, acid-soluble spore proteins, alpha/beta type CJO35_07650 PF08876 Domain of unknown function (DUF1836) CJO35_07655 PF01435 Peptidase family M48 CJO35_07660 PF02386 Cation transport protein CJO35_07665 PF03717 Penicillin-binding Protein dimerisation domain CJO35_07665 PF00905 Penicillin binding protein transpeptidase domain CJO35_07665 PF05223 NTF2-like N-terminal transpeptidase domain CJO35_07680 PF01757 Acyltransferase family CJO35_07685 PF13188 PAS domain CJO35_07685 PF13426 PAS domain CJO35_07685 PF00989 PAS fold CJO35_07685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_07685 PF00512 His Kinase A (phospho-acceptor) domain CJO35_07690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO35_07690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO35_07700 PF01636 Phosphotransferase enzyme family CJO35_07705 PF00795 Carbon-nitrogen hydrolase CJO35_07710 PF00155 Aminotransferase class I and II CJO35_07715 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CJO35_07715 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CJO35_07720 PF00596 Class II Aldolase and Adducin N-terminal domain CJO35_07725 PF03079 ARD/ARD' family CJO35_07730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_07735 PF06803 Protein of unknown function (DUF1232) CJO35_07745 PF00512 His Kinase A (phospho-acceptor) domain CJO35_07745 PF02743 Cache domain CJO35_07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_07750 PF01047 MarR family CJO35_07755 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJO35_07755 PF00691 OmpA family CJO35_07760 PF01618 MotA/TolQ/ExbB proton channel family CJO35_07765 PF00004 ATPase family associated with various cellular activities (AAA) CJO35_07765 PF07724 AAA domain (Cdc48 subfamily) CJO35_07765 PF17871 AAA lid domain CJO35_07765 PF10431 C-terminal, D2-small domain, of ClpB protein CJO35_07775 PF06508 Queuosine biosynthesis protein QueC CJO35_07780 PF01242 6-pyruvoyl tetrahydropterin synthase CJO35_07785 PF04055 Radical SAM superfamily CJO35_07790 PF14489 QueF-like protein CJO35_07800 PF05675 Protein of unknown function (DUF817) CJO35_07805 PF13443 Cro/C1-type HTH DNA-binding domain CJO35_07810 PF11188 Protein of unknown function (DUF2975) CJO35_07835 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) CJO35_07845 PF07486 Cell Wall Hydrolase CJO35_07850 PF01943 Polysaccharide biosynthesis protein CJO35_07855 PF00578 AhpC/TSA family CJO35_07865 PF01321 Creatinase/Prolidase N-terminal domain CJO35_07865 PF00557 Metallopeptidase family M24 CJO35_07875 PF00356 Bacterial regulatory proteins, lacI family CJO35_07875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CJO35_07880 PF00874 PRD domain CJO35_07880 PF03123 CAT RNA binding domain CJO35_07885 PF00367 phosphotransferase system, EIIB CJO35_07885 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJO35_07885 PF02378 Phosphotransferase system, EIIC CJO35_07890 PF00381 PTS HPr component phosphorylation site CJO35_07895 PF05524 PEP-utilising enzyme, N-terminal CJO35_07895 PF02896 PEP-utilising enzyme, TIM barrel domain CJO35_07895 PF00391 PEP-utilising enzyme, mobile domain CJO35_07900 PF11132 Transcriptional regulator protein (SplA) CJO35_07910 PF00583 Acetyltransferase (GNAT) family CJO35_07915 PF00672 HAMP domain CJO35_07915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_07915 PF02743 Cache domain CJO35_07925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO35_07925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO35_07930 PF00188 Cysteine-rich secretory protein family CJO35_07935 PF00905 Penicillin binding protein transpeptidase domain CJO35_07935 PF03717 Penicillin-binding Protein dimerisation domain CJO35_07940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_07940 PF00512 His Kinase A (phospho-acceptor) domain CJO35_07940 PF08447 PAS fold CJO35_07940 PF00989 PAS fold CJO35_07945 PF00155 Aminotransferase class I and II CJO35_07950 PF06271 RDD family CJO35_07960 PF00072 Response regulator receiver domain CJO35_07960 PF01584 CheW-like domain CJO35_07965 PF14177 YkyB-like protein CJO35_07970 PF07690 Major Facilitator Superfamily CJO35_07975 PF03734 L,D-transpeptidase catalytic domain CJO35_07975 PF01476 LysM domain CJO35_07985 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJO35_07985 PF00149 Calcineurin-like phosphoesterase CJO35_07995 PF10388 EAL-domain associated signalling protein domain CJO35_07995 PF00563 EAL domain CJO35_08005 PF08796 Protein of unknown function (DUF1797) CJO35_08015 PF04308 Ribonuclease H-like CJO35_08020 PF14156 Antirepressor AbbA CJO35_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_08030 PF03466 LysR substrate binding domain CJO35_08035 PF00258 Flavodoxin CJO35_08045 PF00258 Flavodoxin CJO35_08050 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_08050 PF14602 Hexapeptide repeat of succinyl-transferase CJO35_08050 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CJO35_08055 PF07687 Peptidase dimerisation domain CJO35_08055 PF01546 Peptidase family M20/M25/M40 CJO35_08060 PF03698 Uncharacterised protein family (UPF0180) CJO35_08065 PF00578 AhpC/TSA family CJO35_08065 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJO35_08070 PF00578 AhpC/TSA family CJO35_08085 PF12804 MobA-like NTP transferase domain CJO35_08090 PF00899 ThiF family CJO35_08095 PF03454 MoeA C-terminal region (domain IV) CJO35_08095 PF00994 Probable molybdopterin binding domain CJO35_08095 PF03453 MoeA N-terminal region (domain I and II) CJO35_08100 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJO35_08105 PF02391 MoaE protein CJO35_08110 PF02597 ThiS family CJO35_08120 PF00005 ABC transporter CJO35_08120 PF00664 ABC transporter transmembrane region CJO35_08125 PF00005 ABC transporter CJO35_08125 PF00664 ABC transporter transmembrane region CJO35_08130 PF04893 Yip1 domain CJO35_08135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO35_08140 PF00005 ABC transporter CJO35_08145 PF02687 FtsX-like permease family CJO35_08145 PF12704 MacB-like periplasmic core domain CJO35_08150 PF08220 DeoR-like helix-turn-helix domain CJO35_08150 PF00455 DeoR C terminal sensor domain CJO35_08155 PF00294 pfkB family carbohydrate kinase CJO35_08160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_08160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_08165 PF10502 Signal peptidase, peptidase S26 CJO35_08180 PF12848 ABC transporter CJO35_08180 PF00005 ABC transporter CJO35_08190 PF02073 Thermophilic metalloprotease (M29) CJO35_08195 PF17447 Uncharacterized YkpC-like CJO35_08205 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJO35_08205 PF18277 AbrB C-terminal domain CJO35_08210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_08210 PF00512 His Kinase A (phospho-acceptor) domain CJO35_08210 PF00989 PAS fold CJO35_08215 PF02080 TrkA-C domain CJO35_08215 PF02254 TrkA-N domain CJO35_08220 PF01979 Amidohydrolase family CJO35_08220 PF13382 Adenine deaminase C-terminal domain CJO35_08225 PF17770 Ribonuclease J C-terminal domain CJO35_08225 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJO35_08225 PF00753 Metallo-beta-lactamase superfamily CJO35_08245 PF01327 Polypeptide deformylase CJO35_08255 PF10368 Putative cell-wall binding lipoprotein CJO35_08260 PF00676 Dehydrogenase E1 component CJO35_08265 PF02780 Transketolase, C-terminal domain CJO35_08265 PF02779 Transketolase, pyrimidine binding domain CJO35_08270 PF02817 e3 binding domain CJO35_08270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO35_08270 PF00364 Biotin-requiring enzyme CJO35_08275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO35_08275 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_08285 PF13790 SR1 protein CJO35_08290 PF01276 Orn/Lys/Arg decarboxylase, major domain CJO35_08290 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJO35_08295 PF05256 Uncharacterised protein family (UPF0223) CJO35_08300 PF06335 Protein of unknown function (DUF1054) CJO35_08310 PF00459 Inositol monophosphatase family CJO35_08315 PF00583 Acetyltransferase (GNAT) family CJO35_08330 PF08281 Sigma-70, region 4 CJO35_08330 PF04542 Sigma-70 region 2 CJO35_08335 PF13490 Putative zinc-finger CJO35_08350 PF14036 YlaH-like protein CJO35_08355 PF01047 MarR family CJO35_08360 PF01494 FAD binding domain CJO35_08365 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) CJO35_08370 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CJO35_08375 PF02562 PhoH-like protein CJO35_08375 PF13638 PIN domain CJO35_08385 PF04960 Glutaminase CJO35_08390 PF07408 Protein of unknown function (DUF1507) CJO35_08395 PF01098 Cell cycle protein CJO35_08400 PF00289 Biotin carboxylase, N-terminal domain CJO35_08400 PF00364 Biotin-requiring enzyme CJO35_08400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO35_08400 PF00682 HMGL-like CJO35_08400 PF02436 Conserved carboxylase domain CJO35_08400 PF02785 Biotin carboxylase C-terminal domain CJO35_08405 PF02628 Cytochrome oxidase assembly protein CJO35_08410 PF01040 UbiA prenyltransferase family CJO35_08415 PF00034 Cytochrome c CJO35_08415 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CJO35_08415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO35_08420 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO35_08425 PF00510 Cytochrome c oxidase subunit III CJO35_08430 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CJO35_08435 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) CJO35_08440 PF08868 YugN-like family CJO35_08445 PF00571 CBS domain CJO35_08450 PF00188 Cysteine-rich secretory protein family CJO35_08450 PF14504 CAP-associated N-terminal CJO35_08455 PF14071 Putative coat protein CJO35_08460 PF14003 YlbE-like protein CJO35_08465 PF06133 Control of competence regulator ComK, YlbF/YmcA CJO35_08470 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CJO35_08480 PF01467 Cytidylyltransferase-like CJO35_08485 PF07670 Nucleoside recognition CJO35_08490 PF05362 Lon protease (S16) C-terminal proteolytic domain CJO35_08490 PF13180 PDZ domain CJO35_08495 PF05636 HIGH Nucleotidyl Transferase CJO35_08500 PF02620 Large ribosomal RNA subunit accumulation protein YceD CJO35_08505 PF01783 Ribosomal L32p protein family CJO35_08515 PF00583 Acetyltransferase (GNAT) family CJO35_08520 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJO35_08520 PF02558 Ketopantoate reductase PanE/ApbA CJO35_08525 PF10079 Bacillithiol biosynthesis BshC CJO35_08530 PF02381 MraZ protein, putative antitoxin-like CJO35_08535 PF01795 MraW methylase family CJO35_08550 PF03793 PASTA domain CJO35_08550 PF03717 Penicillin-binding Protein dimerisation domain CJO35_08550 PF00905 Penicillin binding protein transpeptidase domain CJO35_08555 PF01225 Mur ligase family, catalytic domain CJO35_08555 PF08245 Mur ligase middle domain CJO35_08555 PF02875 Mur ligase family, glutamate ligase domain CJO35_08560 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CJO35_08560 PF00953 Glycosyl transferase family 4 CJO35_08565 PF02875 Mur ligase family, glutamate ligase domain CJO35_08565 PF08245 Mur ligase middle domain CJO35_08570 PF01098 Cell cycle protein CJO35_08575 PF04101 Glycosyltransferase family 28 C-terminal domain CJO35_08575 PF03033 Glycosyltransferase family 28 N-terminal domain CJO35_08580 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJO35_08580 PF01565 FAD binding domain CJO35_08585 PF08478 POTRA domain, FtsQ-type CJO35_08590 PF05949 Bacterial protein of unknown function (DUF881) CJO35_08595 PF05949 Bacterial protein of unknown function (DUF881) CJO35_08600 PF06947 Protein of unknown function (DUF1290) CJO35_08605 PF02491 SHS2 domain inserted in FTSA CJO35_08610 PF00091 Tubulin/FtsZ family, GTPase domain CJO35_08610 PF12327 FtsZ family, C-terminal domain CJO35_08615 PF00082 Subtilase family CJO35_08615 PF05922 Peptidase inhibitor I9 CJO35_08620 PF05922 Peptidase inhibitor I9 CJO35_08620 PF00082 Subtilase family CJO35_08625 PF03419 Sporulation factor SpoIIGA CJO35_08630 PF04542 Sigma-70 region 2 CJO35_08630 PF04545 Sigma-70, region 4 CJO35_08635 PF04545 Sigma-70, region 4 CJO35_08635 PF04539 Sigma-70 region 3 CJO35_08635 PF04542 Sigma-70 region 2 CJO35_08640 PF00005 ABC transporter CJO35_08645 PF08241 Methyltransferase domain CJO35_08650 PF05239 PRC-barrel domain CJO35_08660 PF01168 Alanine racemase, N-terminal domain CJO35_08665 PF04472 Cell division protein SepF CJO35_08670 PF02325 YGGT family CJO35_08675 PF01479 S4 domain CJO35_08675 PF17774 Putative RNA-binding domain in YlmH CJO35_08680 PF05103 DivIVA protein CJO35_08685 PF08264 Anticodon-binding domain of tRNA CJO35_08685 PF00133 tRNA synthetases class I (I, L, M and V) CJO35_08685 PF06827 Zinc finger found in FPG and IleRS CJO35_08690 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJO35_08695 PF01252 Signal peptidase (SPase) II CJO35_08700 PF01479 S4 domain CJO35_08700 PF00849 RNA pseudouridylate synthase CJO35_08705 PF00156 Phosphoribosyl transferase domain CJO35_08710 PF00860 Permease family CJO35_08715 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJO35_08715 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJO35_08720 PF01979 Amidohydrolase family CJO35_08725 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJO35_08725 PF00117 Glutamine amidotransferase class-I CJO35_08730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO35_08730 PF02142 MGS-like domain CJO35_08730 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJO35_08735 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CJO35_08735 PF00175 Oxidoreductase NAD-binding domain CJO35_08740 PF01180 Dihydroorotate dehydrogenase CJO35_08745 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJO35_08750 PF00156 Phosphoribosyl transferase domain CJO35_08760 PF01507 Phosphoadenosine phosphosulfate reductase family CJO35_08765 PF01384 Phosphate transporter family CJO35_08770 PF01747 ATP-sulfurylase CJO35_08770 PF14306 PUA-like domain CJO35_08780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO35_08785 PF01903 CbiX CJO35_08800 PF00690 Cation transporter/ATPase, N-terminus CJO35_08800 PF00689 Cation transporting ATPase, C-terminus CJO35_08805 PF03755 YicC-like family, N-terminal region CJO35_08805 PF08340 Domain of unknown function (DUF1732) CJO35_08810 PF04025 Domain of unknown function (DUF370) CJO35_08815 PF00625 Guanylate kinase CJO35_08820 PF01192 RNA polymerase Rpb6 CJO35_08825 PF02441 Flavoprotein CJO35_08825 PF04127 DNA / pantothenate metabolism flavoprotein CJO35_08830 PF18074 Primosomal protein N C-terminal domain CJO35_08830 PF17764 3′ DNA-binding domain (3′BD) CJO35_08830 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJO35_08830 PF00271 Helicase conserved C-terminal domain CJO35_08830 PF04851 Type III restriction enzyme, res subunit CJO35_08835 PF01327 Polypeptide deformylase CJO35_08840 PF00551 Formyl transferase CJO35_08840 PF02911 Formyl transferase, C-terminal domain CJO35_08845 PF01189 16S rRNA methyltransferase RsmB/F CJO35_08845 PF01029 NusB family CJO35_08850 PF04055 Radical SAM superfamily CJO35_08860 PF03793 PASTA domain CJO35_08860 PF00069 Protein kinase domain CJO35_08865 PF16745 RsgA N-terminal domain CJO35_08865 PF03193 RsgA GTPase CJO35_08870 PF00834 Ribulose-phosphate 3 epimerase family CJO35_08875 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain CJO35_08875 PF04263 Thiamin pyrophosphokinase, catalytic domain CJO35_08880 PF08183 Stage V sporulation protein family CJO35_08885 PF00830 Ribosomal L28 family CJO35_08890 PF03780 Asp23 family, cell envelope-related function CJO35_08895 PF02734 DAK2 domain CJO35_08895 PF13684 Dihydroxyacetone kinase family CJO35_08900 PF01842 ACT domain CJO35_08900 PF03315 Serine dehydratase beta chain CJO35_08905 PF03313 Serine dehydratase alpha chain CJO35_08910 PF00270 DEAD/DEAH box helicase CJO35_08910 PF00271 Helicase conserved C-terminal domain CJO35_08910 PF17191 RecG wedge domain CJO35_08915 PF08279 HTH domain CJO35_08915 PF03061 Thioesterase superfamily CJO35_08920 PF02504 Fatty acid synthesis protein CJO35_08925 PF00698 Acyl transferase domain CJO35_08935 PF00550 Phosphopantetheine attachment site CJO35_08940 PF00035 Double-stranded RNA binding motif CJO35_08940 PF14622 Ribonuclease-III-like CJO35_08945 PF02463 RecF/RecN/SMC N terminal domain CJO35_08945 PF06470 SMC proteins Flexible Hinge Domain CJO35_08950 PF02881 SRP54-type protein, helical bundle domain CJO35_08950 PF00448 SRP54-type protein, GTPase domain CJO35_08955 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CJO35_08960 PF00448 SRP54-type protein, GTPase domain CJO35_08960 PF02881 SRP54-type protein, helical bundle domain CJO35_08960 PF02978 Signal peptide binding domain CJO35_08965 PF00886 Ribosomal protein S16 CJO35_08975 PF11068 YlqD protein CJO35_08980 PF01782 RimM N-terminal domain CJO35_08980 PF05239 PRC-barrel domain CJO35_08985 PF01746 tRNA (Guanine-1)-methyltransferase CJO35_08990 PF01245 Ribosomal protein L19 CJO35_08995 PF01926 50S ribosome-binding GTPase CJO35_09000 PF01351 Ribonuclease HII CJO35_09010 PF01312 FlhB HrpN YscU SpaS Family CJO35_09015 PF00549 CoA-ligase CJO35_09015 PF08442 ATP-grasp domain CJO35_09020 PF02629 CoA binding domain CJO35_09020 PF00549 CoA-ligase CJO35_09025 PF02481 DNA recombination-mediator protein A CJO35_09030 PF01396 Topoisomerase DNA binding C4 zinc finger CJO35_09030 PF01131 DNA topoisomerase CJO35_09030 PF01751 Toprim domain CJO35_09035 PF01134 Glucose inhibited division protein A CJO35_09040 PF00589 Phage integrase family CJO35_09040 PF02899 Phage integrase, N-terminal SAM-like domain CJO35_09045 PF00227 Proteasome subunit CJO35_09050 PF10431 C-terminal, D2-small domain, of ClpB protein CJO35_09050 PF00004 ATPase family associated with various cellular activities (AAA) CJO35_09050 PF07724 AAA domain (Cdc48 subfamily) CJO35_09055 PF08222 CodY helix-turn-helix domain CJO35_09055 PF06018 CodY GAF-like domain CJO35_09060 PF00460 Flagella basal body rod protein CJO35_09065 PF00460 Flagella basal body rod protein CJO35_09065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO35_09070 PF02049 Flagellar hook-basal body complex protein FliE CJO35_09075 PF01514 Secretory protein of YscJ/FliF family CJO35_09075 PF08345 Flagellar M-ring protein C-terminal CJO35_09080 PF14842 FliG N-terminal domain CJO35_09080 PF14841 FliG middle domain CJO35_09080 PF01706 FliG C-terminal domain CJO35_09085 PF02108 Flagellar assembly protein FliH CJO35_09090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO35_09090 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO35_09090 PF18269 T3SS EscN ATPase C-terminal domain CJO35_09095 PF02050 Flagellar FliJ protein CJO35_09105 PF02120 Flagellar hook-length control protein FliK CJO35_09110 PF03963 Flagellar hook capping protein - N-terminal region CJO35_09115 PF00460 Flagella basal body rod protein CJO35_09115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO35_09120 PF06289 Flagellar and Swarming motility proteins CJO35_09125 PF03748 Flagellar basal body-associated protein FliL CJO35_09130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJO35_09130 PF02154 Flagellar motor switch protein FliM CJO35_09135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJO35_09135 PF04509 CheC-like family CJO35_09140 PF00072 Response regulator receiver domain CJO35_09145 PF04347 Flagellar biosynthesis protein, FliO CJO35_09150 PF00813 FliP family CJO35_09155 PF01313 Bacterial export proteins, family 3 CJO35_09160 PF01311 Bacterial export proteins, family 1 CJO35_09165 PF01312 FlhB HrpN YscU SpaS Family CJO35_09170 PF00771 FHIPEP family CJO35_09175 PF00448 SRP54-type protein, GTPase domain CJO35_09180 PF10609 NUBPL iron-transfer P-loop NTPase CJO35_09185 PF00072 Response regulator receiver domain CJO35_09185 PF01339 CheB methylesterase CJO35_09190 PF01584 CheW-like domain CJO35_09190 PF07194 P2 response regulator binding domain CJO35_09190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_09190 PF02895 Signal transducing histidine kinase, homodimeric domain CJO35_09190 PF01627 Hpt domain CJO35_09195 PF01584 CheW-like domain CJO35_09200 PF04509 CheC-like family CJO35_09205 PF03975 CheD chemotactic sensory transduction CJO35_09210 PF04545 Sigma-70, region 4 CJO35_09210 PF04542 Sigma-70 region 2 CJO35_09210 PF04539 Sigma-70 region 3 CJO35_09220 PF00318 Ribosomal protein S2 CJO35_09225 PF00889 Elongation factor TS CJO35_09230 PF00696 Amino acid kinase family CJO35_09235 PF01765 Ribosome recycling factor CJO35_09240 PF01255 Putative undecaprenyl diphosphate synthase CJO35_09250 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJO35_09250 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJO35_09250 PF13288 DXP reductoisomerase C-terminal domain CJO35_09255 PF02163 Peptidase family M50 CJO35_09255 PF17820 PDZ domain CJO35_09260 PF04073 Aminoacyl-tRNA editing domain CJO35_09260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO35_09260 PF03129 Anticodon binding domain CJO35_09265 PF02811 PHP domain CJO35_09265 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJO35_09265 PF11490 DNA polymerase III polC-type N-terminus II CJO35_09265 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJO35_09265 PF14579 Helix-hairpin-helix motif CJO35_09265 PF00929 Exonuclease CJO35_09265 PF14480 DNA polymerase III polC-type N-terminus I CJO35_09275 PF00942 Cellulose binding domain CJO35_09275 PF00759 Glycosyl hydrolase family 9 CJO35_09280 PF00942 Cellulose binding domain CJO35_09280 PF00759 Glycosyl hydrolase family 9 CJO35_09280 PF02011 Glycosyl hydrolase family 48 CJO35_09285 PF18448 Carbohydrate binding domain CJO35_09285 PF03442 Carbohydrate binding domain X2 CJO35_09285 PF00150 Cellulase (glycosyl hydrolase family 5) CJO35_09295 PF17384 RimP C-terminal SH3 domain CJO35_09295 PF02576 RimP N-terminal domain CJO35_09300 PF13184 NusA-like KH domain CJO35_09300 PF08529 NusA N-terminal domain CJO35_09300 PF00575 S1 RNA binding domain CJO35_09305 PF04296 Protein of unknown function (DUF448) CJO35_09310 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CJO35_09315 PF11987 Translation-initiation factor 2 CJO35_09315 PF00009 Elongation factor Tu GTP binding domain CJO35_09315 PF04760 Translation initiation factor IF-2, N-terminal region CJO35_09320 PF04456 Protein of unknown function (DUF503) CJO35_09325 PF02033 Ribosome-binding factor A CJO35_09330 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJO35_09330 PF16198 tRNA pseudouridylate synthase B C-terminal domain CJO35_09335 PF06574 FAD synthetase CJO35_09335 PF01687 Riboflavin kinase CJO35_09340 PF00312 Ribosomal protein S15 CJO35_09345 PF00013 KH domain CJO35_09345 PF01138 3' exoribonuclease family, domain 1 CJO35_09345 PF03725 3' exoribonuclease family, domain 2 CJO35_09345 PF00575 S1 RNA binding domain CJO35_09345 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJO35_09350 PF01522 Polysaccharide deacetylase CJO35_09355 PF00675 Insulinase (Peptidase family M16) CJO35_09355 PF05193 Peptidase M16 inactive domain CJO35_09360 PF05239 PRC-barrel domain CJO35_09365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJO35_09365 PF16924 Dipicolinate synthase subunit A N-terminal domain CJO35_09370 PF02441 Flavoprotein CJO35_09375 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJO35_09375 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJO35_09380 PF13840 ACT domain CJO35_09380 PF00696 Amino acid kinase family CJO35_09385 PF00701 Dihydrodipicolinate synthetase family CJO35_09390 PF17770 Ribonuclease J C-terminal domain CJO35_09390 PF00753 Metallo-beta-lactamase superfamily CJO35_09390 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJO35_09395 PF00574 Clp protease CJO35_09400 PF14035 YlzJ-like protein CJO35_09405 PF09397 Ftsk gamma domain CJO35_09405 PF17854 FtsK alpha domain CJO35_09405 PF01580 FtsK/SpoIIIE family CJO35_09410 PF00392 Bacterial regulatory proteins, gntR family CJO35_09410 PF07702 UTRA domain CJO35_09415 PF07690 Major Facilitator Superfamily CJO35_09420 PF05193 Peptidase M16 inactive domain CJO35_09425 PF05193 Peptidase M16 inactive domain CJO35_09425 PF00675 Insulinase (Peptidase family M16) CJO35_09435 PF11588 Protein of unknown function (DUF3243) CJO35_09440 PF11868 Protein of unknown function (DUF3388) CJO35_09445 PF13464 Domain of unknown function (DUF4115) CJO35_09450 PF01066 CDP-alcohol phosphatidyltransferase CJO35_09455 PF02464 Competence-damaged protein CJO35_09455 PF00994 Probable molybdopterin binding domain CJO35_09455 PF18146 Damage-inducible protein CinA KH domain CJO35_09460 PF00154 recA bacterial DNA recombination protein CJO35_09465 PF12072 Domain of unknown function (DUF3552) CJO35_09465 PF00013 KH domain CJO35_09465 PF01966 HD domain CJO35_09470 PF13277 YmdB-like protein CJO35_09475 PF04232 Stage V sporulation protein S (SpoVS) CJO35_09480 PF01244 Membrane dipeptidase (Peptidase family M19) CJO35_09485 PF08240 Alcohol dehydrogenase GroES-like domain CJO35_09485 PF00107 Zinc-binding dehydrogenase CJO35_09490 PF00155 Aminotransferase class I and II CJO35_09495 PF04055 Radical SAM superfamily CJO35_09495 PF01938 TRAM domain CJO35_09495 PF00919 Uncharacterized protein family UPF0004 CJO35_09500 PF06133 Control of competence regulator ComK, YlbF/YmcA CJO35_09505 PF10628 Outer spore coat protein E (CotE) CJO35_09510 PF05190 MutS family domain IV CJO35_09510 PF01624 MutS domain I CJO35_09510 PF05188 MutS domain II CJO35_09510 PF05192 MutS domain III CJO35_09510 PF00488 MutS domain V CJO35_09515 PF01119 DNA mismatch repair protein, C-terminal domain CJO35_09515 PF08676 MutL C terminal dimerisation domain CJO35_09520 PF03992 Antibiotic biosynthesis monooxygenase CJO35_09525 PF04740 LXG domain of WXG superfamily CJO35_09525 PF14449 Pre-toxin TG CJO35_09545 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO35_09545 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO35_09555 PF00583 Acetyltransferase (GNAT) family CJO35_09575 PF06912 Protein of unknown function (DUF1275) CJO35_09580 PF02080 TrkA-C domain CJO35_09580 PF00999 Sodium/hydrogen exchanger family CJO35_09580 PF03471 Transporter associated domain CJO35_09585 PF07690 Major Facilitator Superfamily CJO35_09590 PF07690 Major Facilitator Superfamily CJO35_09595 PF07690 Major Facilitator Superfamily CJO35_09600 PF00561 alpha/beta hydrolase fold CJO35_09605 PF00561 alpha/beta hydrolase fold CJO35_09615 PF01906 Putative heavy-metal-binding CJO35_09620 PF09335 SNARE associated Golgi protein CJO35_09625 PF11954 Domain of unknown function (DUF3471) CJO35_09625 PF00144 Beta-lactamase CJO35_09630 PF04101 Glycosyltransferase family 28 C-terminal domain CJO35_09635 PF13520 Amino acid permease CJO35_09640 PF07875 Coat F domain CJO35_09650 PF00704 Glycosyl hydrolases family 18 CJO35_09650 PF01476 LysM domain CJO35_09655 PF00440 Bacterial regulatory proteins, tetR family CJO35_09660 PF12680 SnoaL-like domain CJO35_09665 PF01370 NAD dependent epimerase/dehydratase family CJO35_09675 PF02566 OsmC-like protein CJO35_09680 PF00893 Small Multidrug Resistance protein CJO35_09685 PF00893 Small Multidrug Resistance protein CJO35_09695 PF12788 YmaF family CJO35_09705 PF17209 Hfq protein CJO35_09720 PF07972 NrdI Flavodoxin like CJO35_09725 PF00317 Ribonucleotide reductase, all-alpha domain CJO35_09725 PF08343 Ribonucleotide reductase N-terminal CJO35_09725 PF02867 Ribonucleotide reductase, barrel domain CJO35_09730 PF00268 Ribonucleotide reductase, small chain CJO35_09740 PF00753 Metallo-beta-lactamase superfamily CJO35_09745 PF01592 NifU-like N terminal domain CJO35_09750 PF01475 Ferric uptake regulator family CJO35_09755 PF07729 FCD domain CJO35_09755 PF00392 Bacterial regulatory proteins, gntR family CJO35_09760 PF13536 Putative multidrug resistance efflux transporter CJO35_09765 PF01520 N-acetylmuramoyl-L-alanine amidase CJO35_09765 PF05036 Sporulation related domain CJO35_09795 PF00440 Bacterial regulatory proteins, tetR family CJO35_09810 PF01968 Hydantoinase/oxoprolinase CJO35_09810 PF05378 Hydantoinase/oxoprolinase N-terminal region CJO35_09820 PF02538 Hydantoinase B/oxoprolinase CJO35_09850 PF00004 ATPase family associated with various cellular activities (AAA) CJO35_09850 PF17866 AAA lid domain CJO35_09855 PF13167 GTP-binding GTPase N-terminal CJO35_09855 PF01926 50S ribosome-binding GTPase CJO35_09855 PF16360 GTP-binding GTPase Middle Region CJO35_09860 PF06838 Methionine gamma-lyase CJO35_09865 PF13411 MerR HTH family regulatory protein CJO35_09870 PF03951 Glutamine synthetase, beta-Grasp domain CJO35_09870 PF00120 Glutamine synthetase, catalytic domain CJO35_09900 PF01230 HIT domain CJO35_09935 PF16302 Domain of unknown function (DUF4944) CJO35_09955 PF17934 Tetracyclin repressor-like, C-terminal domain CJO35_09955 PF00440 Bacterial regulatory proteins, tetR family CJO35_09960 PF00893 Small Multidrug Resistance protein CJO35_09965 PF00893 Small Multidrug Resistance protein CJO35_09970 PF13302 Acetyltransferase (GNAT) domain CJO35_09985 PF08534 Redoxin CJO35_09990 PF05067 Manganese containing catalase CJO35_10010 PF00440 Bacterial regulatory proteins, tetR family CJO35_10010 PF08360 QacR-like protein, C-terminal region CJO35_10015 PF01047 MarR family CJO35_10020 PF00881 Nitroreductase family CJO35_10025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_10030 PF01613 Flavin reductase like domain CJO35_10035 PF03358 NADPH-dependent FMN reductase CJO35_10050 PF00303 Thymidylate synthase CJO35_10055 PF14040 Deoxyribonuclease NucA/NucB CJO35_10060 PF01726 LexA DNA binding domain CJO35_10060 PF00717 Peptidase S24-like CJO35_10065 PF01476 LysM domain CJO35_10070 PF00239 Resolvase, N terminal domain CJO35_10075 PF05979 Bacterial protein of unknown function (DUF896) CJO35_10080 PF00456 Transketolase, thiamine diphosphate binding domain CJO35_10080 PF02780 Transketolase, C-terminal domain CJO35_10080 PF02779 Transketolase, pyrimidine binding domain CJO35_10085 PF10747 Sporulation inhibitor of replication protein SirA CJO35_10090 PF03672 Uncharacterised protein family (UPF0154) CJO35_10095 PF09388 Spo0E like sporulation regulatory protein CJO35_10100 PF02683 Cytochrome C biogenesis protein transmembrane region CJO35_10105 PF00072 Response regulator receiver domain CJO35_10110 PF07301 Protein of unknown function (DUF1453) CJO35_10115 PF11084 Protein of unknown function (DUF2621) CJO35_10125 PF08179 Small acid-soluble spore protein P family CJO35_10135 PF00694 Aconitase C-terminal domain CJO35_10135 PF00330 Aconitase family (aconitate hydratase) CJO35_10140 PF00578 AhpC/TSA family CJO35_10145 PF13040 Fur-regulated basic protein B CJO35_10150 PF08177 Small acid-soluble spore protein N family CJO35_10160 PF03061 Thioesterase superfamily CJO35_10185 PF01521 Iron-sulphur cluster biosynthesis CJO35_10190 PF02660 Glycerol-3-phosphate acyltransferase CJO35_10195 PF13380 CoA binding domain CJO35_10200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_10200 PF01751 Toprim domain CJO35_10200 PF00986 DNA gyrase B subunit, carboxyl terminus CJO35_10200 PF00204 DNA gyrase B CJO35_10205 PF03989 DNA gyrase C-terminal domain, beta-propeller CJO35_10205 PF00521 DNA gyrase/topoisomerase IV, subunit A CJO35_10210 PF00392 Bacterial regulatory proteins, gntR family CJO35_10220 PF00596 Class II Aldolase and Adducin N-terminal domain CJO35_10225 PF11762 L-arabinose isomerase C-terminal domain CJO35_10225 PF02610 L-arabinose isomerase CJO35_10230 PF00083 Sugar (and other) transporter CJO35_10235 PF00106 short chain dehydrogenase CJO35_10245 PF01235 Sodium:alanine symporter family CJO35_10255 PF02665 Nitrate reductase gamma subunit CJO35_10260 PF02613 Nitrate reductase delta subunit CJO35_10265 PF14711 Respiratory nitrate reductase beta C-terminal CJO35_10265 PF13247 4Fe-4S dicluster domain CJO35_10270 PF00384 Molybdopterin oxidoreductase CJO35_10270 PF01568 Molydopterin dinucleotide binding domain CJO35_10270 PF14710 Respiratory nitrate reductase alpha N-terminal CJO35_10285 PF06463 Molybdenum Cofactor Synthesis C CJO35_10285 PF04055 Radical SAM superfamily CJO35_10295 PF14256 YwiC-like protein CJO35_10300 PF00027 Cyclic nucleotide-binding domain CJO35_10300 PF00325 Bacterial regulatory proteins, crp family CJO35_10305 PF07690 Major Facilitator Superfamily CJO35_10315 PF00027 Cyclic nucleotide-binding domain CJO35_10315 PF13545 Crp-like helix-turn-helix domain CJO35_10320 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO35_10325 PF01814 Hemerythrin HHE cation binding domain CJO35_10325 PF04405 Domain of Unknown function (DUF542) CJO35_10330 PF07098 Protein of unknown function (DUF1360) CJO35_10335 PF00150 Cellulase (glycosyl hydrolase family 5) CJO35_10335 PF00942 Cellulose binding domain CJO35_10340 PF17452 Uncharacterized YnfE-like CJO35_10345 PF13302 Acetyltransferase (GNAT) domain CJO35_10370 PF13229 Right handed beta helix region CJO35_10375 PF05525 Branched-chain amino acid transport protein CJO35_10385 PF13411 MerR HTH family regulatory protein CJO35_10395 PF12706 Beta-lactamase superfamily domain CJO35_10410 PF00378 Enoyl-CoA hydratase/isomerase CJO35_10415 PF00171 Aldehyde dehydrogenase family CJO35_10420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO35_10420 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO35_10425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO35_10425 PF02770 Acyl-CoA dehydrogenase, middle domain CJO35_10425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO35_10430 PF01238 Phosphomannose isomerase type I CJO35_10435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_10435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_10435 PF02378 Phosphotransferase system, EIIC CJO35_10455 PF05043 Mga helix-turn-helix domain CJO35_10455 PF00874 PRD domain CJO35_10455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_10455 PF08279 HTH domain CJO35_10465 PF00005 ABC transporter CJO35_10470 PF00392 Bacterial regulatory proteins, gntR family CJO35_10475 PF00106 short chain dehydrogenase CJO35_10480 PF03786 D-mannonate dehydratase (UxuA) CJO35_10485 PF13802 Galactose mutarotase-like CJO35_10485 PF01055 Glycosyl hydrolases family 31 CJO35_10485 PF16338 Domain of unknown function (DUF4968) CJO35_10485 PF17137 Domain of unknown function (DUF5110) CJO35_10490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CJO35_10495 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CJO35_10500 PF03480 Bacterial extracellular solute-binding protein, family 7 CJO35_10505 PF00356 Bacterial regulatory proteins, lacI family CJO35_10510 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJO35_10515 PF02040 Arsenical pump membrane protein CJO35_10520 PF01022 Bacterial regulatory protein, arsR family CJO35_10530 PF08818 Domain of unknown function (DU1801) CJO35_10540 PF06800 Sugar transport protein CJO35_10545 PF02638 Glycosyl hydrolase-like 10 CJO35_10555 PF04055 Radical SAM superfamily CJO35_10560 PF01228 Glycine radical CJO35_10560 PF02901 Pyruvate formate lyase-like CJO35_10565 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CJO35_10570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_10575 PF07849 Protein of unknown function (DUF1641) CJO35_10585 PF12728 Helix-turn-helix domain CJO35_10595 PF13193 AMP-binding enzyme C-terminal domain CJO35_10595 PF00501 AMP-binding enzyme CJO35_10595 PF16177 Acetyl-coenzyme A synthetase N-terminus CJO35_10600 PF01039 Carboxyl transferase domain CJO35_10605 PF00378 Enoyl-CoA hydratase/isomerase CJO35_10610 PF00682 HMGL-like CJO35_10615 PF00364 Biotin-requiring enzyme CJO35_10620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO35_10620 PF00289 Biotin carboxylase, N-terminal domain CJO35_10620 PF02785 Biotin carboxylase C-terminal domain CJO35_10625 PF13193 AMP-binding enzyme C-terminal domain CJO35_10625 PF00501 AMP-binding enzyme CJO35_10630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO35_10630 PF02770 Acyl-CoA dehydrogenase, middle domain CJO35_10630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO35_10635 PF02525 Flavodoxin-like fold CJO35_10640 PF01638 HxlR-like helix-turn-helix CJO35_10645 PF00171 Aldehyde dehydrogenase family CJO35_10650 PF00696 Amino acid kinase family CJO35_10650 PF01472 PUA domain CJO35_10655 PF03807 NADP oxidoreductase coenzyme F420-dependent CJO35_10655 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJO35_10660 PF04239 Protein of unknown function (DUF421) CJO35_10670 PF01384 Phosphate transporter family CJO35_10675 PF01507 Phosphoadenosine phosphosulfate reductase family CJO35_10680 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) CJO35_10685 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CJO35_10690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO35_10690 PF13378 Enolase C-terminal domain-like CJO35_10695 PF07690 Major Facilitator Superfamily CJO35_10700 PF00535 Glycosyl transferase family 2 CJO35_10715 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_10715 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJO35_10720 PF04898 Glutamate synthase central domain CJO35_10720 PF00310 Glutamine amidotransferases class-II CJO35_10720 PF01645 Conserved region in glutamate synthase CJO35_10720 PF01493 GXGXG motif CJO35_10725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_10725 PF03466 LysR substrate binding domain CJO35_10745 PF01047 MarR family CJO35_10750 PF00005 ABC transporter CJO35_10750 PF00664 ABC transporter transmembrane region CJO35_10755 PF00005 ABC transporter CJO35_10755 PF00664 ABC transporter transmembrane region CJO35_10760 PF00067 Cytochrome P450 CJO35_10765 PF00106 short chain dehydrogenase CJO35_10770 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJO35_10770 PF00391 PEP-utilising enzyme, mobile domain CJO35_10780 PF07690 Major Facilitator Superfamily CJO35_10785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO35_10785 PF00384 Molybdopterin oxidoreductase CJO35_10785 PF01568 Molydopterin dinucleotide binding domain CJO35_10790 PF01047 MarR family CJO35_10800 PF03845 Spore germination protein CJO35_10805 PF05504 Spore germination B3/ GerAC like, C-terminal CJO35_10810 PF03845 Spore germination protein CJO35_10815 PF03845 Spore germination protein CJO35_10820 PF03323 Bacillus/Clostridium GerA spore germination protein CJO35_10835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_10835 PF02743 Cache domain CJO35_10835 PF00672 HAMP domain CJO35_10840 PF01588 Putative tRNA binding domain CJO35_10845 PF00082 Subtilase family CJO35_10855 PF17932 Tetracyclin repressor-like, C-terminal domain CJO35_10855 PF00440 Bacterial regulatory proteins, tetR family CJO35_10860 PF01047 MarR family CJO35_10865 PF01966 HD domain CJO35_10875 PF14158 YndJ-like protein CJO35_10880 PF13761 Domain of unknown function (DUF4166) CJO35_10890 PF00440 Bacterial regulatory proteins, tetR family CJO35_10890 PF13305 Tetracyclin repressor-like, C-terminal domain CJO35_10910 PF08279 HTH domain CJO35_10910 PF13280 WYL domain CJO35_10920 PF01022 Bacterial regulatory protein, arsR family CJO35_10935 PF00324 Amino acid permease CJO35_10945 PF02719 Polysaccharide biosynthesis protein CJO35_10960 PF00534 Glycosyl transferases group 1 CJO35_10965 PF04238 Protein of unknown function (DUF420) CJO35_10980 PF00474 Sodium:solute symporter family CJO35_10985 PF01476 LysM domain CJO35_10985 PF06725 3D domain CJO35_10990 PF00270 DEAD/DEAH box helicase CJO35_10990 PF00271 Helicase conserved C-terminal domain CJO35_10990 PF09382 RQC domain CJO35_10990 PF00570 HRDC domain CJO35_10990 PF16124 RecQ zinc-binding CJO35_11030 PF07849 Protein of unknown function (DUF1641) CJO35_11035 PF12838 4Fe-4S dicluster domain CJO35_11035 PF00384 Molybdopterin oxidoreductase CJO35_11035 PF01568 Molydopterin dinucleotide binding domain CJO35_11035 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJO35_11035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO35_11060 PF07238 PilZ domain CJO35_11060 PF12945 Flagellar protein YcgR CJO35_11085 PF13217 Protein of unknown function (DUF4025) CJO35_11090 PF05504 Spore germination B3/ GerAC like, C-terminal CJO35_11105 PF01979 Amidohydrolase family CJO35_11110 PF11122 Inner spore coat protein D CJO35_11120 PF08386 TAP-like protein CJO35_11120 PF00561 alpha/beta hydrolase fold CJO35_11130 PF11122 Inner spore coat protein D CJO35_11135 PF01810 LysE type translocator CJO35_11140 PF00253 Ribosomal protein S14p/S29e CJO35_11145 PF00293 NUDIX domain CJO35_11145 PF13344 Haloacid dehalogenase-like hydrolase CJO35_11150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJO35_11150 PF00391 PEP-utilising enzyme, mobile domain CJO35_11155 PF00440 Bacterial regulatory proteins, tetR family CJO35_11165 PF10710 Protein of unknown function (DUF2512) CJO35_11170 PF05163 DinB family CJO35_11175 PF02525 Flavodoxin-like fold CJO35_11180 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJO35_11185 PF08000 Bacterial PH domain CJO35_11195 PF00171 Aldehyde dehydrogenase family CJO35_11200 PF07690 Major Facilitator Superfamily CJO35_11205 PF01636 Phosphotransferase enzyme family CJO35_11215 PF13243 Squalene-hopene cyclase C-terminal domain CJO35_11215 PF13249 Squalene-hopene cyclase N-terminal domain CJO35_11220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJO35_11220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJO35_11230 PF00209 Sodium:neurotransmitter symporter family CJO35_11235 PF01758 Sodium Bile acid symporter family CJO35_11240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO35_11240 PF00364 Biotin-requiring enzyme CJO35_11240 PF02817 e3 binding domain CJO35_11245 PF00676 Dehydrogenase E1 component CJO35_11245 PF16870 2-oxoglutarate dehydrogenase C-terminal CJO35_11245 PF02779 Transketolase, pyrimidine binding domain CJO35_11250 PF00092 von Willebrand factor type A domain CJO35_11255 PF07728 AAA domain (dynein-related subfamily) CJO35_11260 PF00080 Copper/zinc superoxide dismutase (SODC) CJO35_11260 PF13627 Prokaryotic lipoprotein-attachment site CJO35_11265 PF01476 LysM domain CJO35_11265 PF00877 NlpC/P60 family CJO35_11275 PF01554 MatE CJO35_11280 PF02585 GlcNAc-PI de-N-acetylase CJO35_11285 PF08830 Protein of unknown function (DUF1806) CJO35_11295 PF00892 EamA-like transporter family CJO35_11305 PF03330 Lytic transglycolase CJO35_11320 PF01638 HxlR-like helix-turn-helix CJO35_11325 PF00881 Nitroreductase family CJO35_11330 PF01738 Dienelactone hydrolase family CJO35_11335 PF11755 Protein of unknown function (DUF3311) CJO35_11340 PF00474 Sodium:solute symporter family CJO35_11345 PF01471 Putative peptidoglycan binding domain CJO35_11345 PF03572 Peptidase family S41 CJO35_11345 PF17820 PDZ domain CJO35_11350 PF08241 Methyltransferase domain CJO35_11360 PF02557 D-alanyl-D-alanine carboxypeptidase CJO35_11365 PF01048 Phosphorylase superfamily CJO35_11370 PF03773 Predicted permease CJO35_11385 PF14191 YodL-like CJO35_11390 PF01569 PAP2 superfamily CJO35_11395 PF14162 YozD-like protein CJO35_11410 PF06855 YozE SAM-like fold CJO35_11415 PF14122 YokU-like protein, putative antitoxin CJO35_11420 PF12544 Lysine-2,3-aminomutase CJO35_11425 PF00583 Acetyltransferase (GNAT) family CJO35_11430 PF01546 Peptidase family M20/M25/M40 CJO35_11430 PF07687 Peptidase dimerisation domain CJO35_11435 PF01144 Coenzyme A transferase CJO35_11440 PF01144 Coenzyme A transferase CJO35_11445 PF00202 Aminotransferase class-III CJO35_11460 PF00583 Acetyltransferase (GNAT) family CJO35_11465 PF01641 SelR domain CJO35_11470 PF01625 Peptide methionine sulfoxide reductase CJO35_11475 PF01047 MarR family CJO35_11485 PF00990 Diguanylate cyclase, GGDEF domain CJO35_11485 PF07694 5TMR of 5TMR-LYT CJO35_11490 PF01554 MatE CJO35_11500 PF17431 Uncharacterized YmpT-like CJO35_11505 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) CJO35_11510 PF13472 GDSL-like Lipase/Acylhydrolase family CJO35_11515 PF02630 SCO1/SenC CJO35_11520 PF02645 Uncharacterised protein, DegV family COG1307 CJO35_11525 PF10751 Protein of unknown function (DUF2535) CJO35_11530 PF00585 C-terminal regulatory domain of Threonine dehydratase CJO35_11530 PF00291 Pyridoxal-phosphate dependent enzyme CJO35_11535 PF00158 Sigma-54 interaction domain CJO35_11535 PF08461 Ribonuclease R winged-helix domain CJO35_11540 PF03006 Haemolysin-III related CJO35_11550 PF00186 Dihydrofolate reductase CJO35_11555 PF04608 Phosphatidylglycerophosphatase A CJO35_11560 PF14005 YpjP-like protein CJO35_11565 PF04445 Putative SAM-dependent methyltransferase CJO35_11570 PF06491 Disulphide isomerase CJO35_11575 PF00920 Dehydratase family CJO35_11580 PF08712 Scaffold protein Nfu/NifU N terminal CJO35_11580 PF13769 Virulence factor CJO35_11585 PF01966 HD domain CJO35_11590 PF00255 Glutathione peroxidase CJO35_11595 PF01268 Formate--tetrahydrofolate ligase CJO35_11600 PF04204 Homoserine O-succinyltransferase CJO35_11605 PF00534 Glycosyl transferases group 1 CJO35_11605 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CJO35_11615 PF00313 'Cold-shock' DNA-binding domain CJO35_11625 PF10819 Protein of unknown function (DUF2564) CJO35_11630 PF10782 Zinc-finger CJO35_11635 PF13456 Reverse transcriptase-like CJO35_11640 PF02592 Putative vitamin uptake transporter CJO35_11645 PF13456 Reverse transcriptase-like CJO35_11655 PF01367 5'-3' exonuclease, C-terminal SAM fold CJO35_11655 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJO35_11665 PF10752 Protein of unknown function (DUF2533) CJO35_11670 PF00350 Dynamin family CJO35_11680 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CJO35_11685 PF00195 Chalcone and stilbene synthases, N-terminal domain CJO35_11685 PF02797 Chalcone and stilbene synthases, C-terminal domain CJO35_11690 PF00583 Acetyltransferase (GNAT) family CJO35_11695 PF00860 Permease family CJO35_11700 PF00156 Phosphoribosyl transferase domain CJO35_11705 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CJO35_11710 PF13307 Helicase C-terminal domain CJO35_11725 PF02926 THUMP domain CJO35_11725 PF01170 Putative RNA methylase family UPF0020 CJO35_11735 PF05103 DivIVA protein CJO35_11740 PF06908 YspA SLOG family CJO35_11745 PF11122 Inner spore coat protein D CJO35_11750 PF13482 RNase_H superfamily CJO35_11755 PF00271 Helicase conserved C-terminal domain CJO35_11755 PF09369 Domain of unknown function (DUF1998) CJO35_11755 PF00270 DEAD/DEAH box helicase CJO35_11760 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJO35_11770 PF14179 YppG-like protein CJO35_11775 PF14178 YppF-like protein CJO35_11780 PF08807 Bacterial domain of unknown function (DUF1798) CJO35_11795 PF10720 Protein of unknown function (DUF2515) CJO35_11800 PF03838 Recombination protein U CJO35_11805 PF00912 Transglycosylase CJO35_11805 PF00905 Penicillin binding protein transpeptidase domain CJO35_11815 PF10576 Iron-sulfur binding domain of endonuclease III CJO35_11815 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO35_11815 PF00633 Helix-hairpin-helix motif CJO35_11820 PF07261 Replication initiation and membrane attachment CJO35_11825 PF00152 tRNA synthetases class II (D, K and N) CJO35_11825 PF01336 OB-fold nucleic acid binding domain CJO35_11830 PF00155 Aminotransferase class I and II CJO35_11835 PF17881 Domain of unknown function (DUF5590) CJO35_11835 PF03413 Peptidase propeptide and YPEB domain CJO35_11840 PF14084 Protein of unknown function (DUF4264) CJO35_11845 PF13307 Helicase C-terminal domain CJO35_11845 PF04851 Type III restriction enzyme, res subunit CJO35_11845 PF00929 Exonuclease CJO35_11850 PF02261 Aspartate decarboxylase CJO35_11855 PF02569 Pantoate-beta-alanine ligase CJO35_11860 PF02548 Ketopantoate hydroxymethyltransferase CJO35_11870 PF02237 Biotin protein ligase C terminal domain CJO35_11870 PF08279 HTH domain CJO35_11870 PF03099 Biotin/lipoate A/B protein ligase family CJO35_11875 PF12627 Probable RNA and SrmB- binding site of polymerase A CJO35_11875 PF01743 Poly A polymerase head domain CJO35_11875 PF13735 tRNA nucleotidyltransferase domain 2 putative CJO35_11880 PF00534 Glycosyl transferases group 1 CJO35_11880 PF13439 Glycosyltransferase Family 4 CJO35_11885 PF02585 GlcNAc-PI de-N-acetylase CJO35_11890 PF02142 MGS-like domain CJO35_11895 PF05173 Dihydrodipicolinate reductase, C-terminus CJO35_11895 PF01113 Dihydrodipicolinate reductase, N-terminus CJO35_11900 PF03819 MazG nucleotide pyrophosphohydrolase domain CJO35_11905 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CJO35_11905 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CJO35_11910 PF09577 Sporulation protein YpjB (SpoYpjB) CJO35_11915 PF07187 Protein of unknown function (DUF1405) CJO35_11920 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO35_11920 PF00032 Cytochrome b(C-terminal)/b6/petD CJO35_11925 PF00033 Cytochrome b/b6/petB CJO35_11930 PF00355 Rieske [2Fe-2S] domain CJO35_11935 PF10673 Protein of unknown function (DUF2487) CJO35_11940 PF08858 IDEAL domain CJO35_11940 PF08864 UPF0302 domain CJO35_11950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJO35_11955 PF02153 Prephenate dehydrogenase CJO35_11955 PF01842 ACT domain CJO35_11960 PF00155 Aminotransferase class I and II CJO35_11965 PF00290 Tryptophan synthase alpha chain CJO35_11970 PF00291 Pyridoxal-phosphate dependent enzyme CJO35_11975 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJO35_11980 PF00218 Indole-3-glycerol phosphate synthase CJO35_11985 PF02885 Glycosyl transferase family, helical bundle domain CJO35_11985 PF00591 Glycosyl transferase family, a/b domain CJO35_11990 PF00425 chorismate binding enzyme CJO35_11990 PF04715 Anthranilate synthase component I, N terminal region CJO35_11995 PF07736 Chorismate mutase type I CJO35_12000 PF01761 3-dehydroquinate synthase CJO35_12005 PF01264 Chorismate synthase CJO35_12010 PF01739 CheR methyltransferase, SAM binding domain CJO35_12010 PF03705 CheR methyltransferase, all-alpha domain CJO35_12015 PF00334 Nucleoside diphosphate kinase CJO35_12020 PF00348 Polyprenyl synthetase CJO35_12025 PF01209 ubiE/COQ5 methyltransferase family CJO35_12030 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 CJO35_12035 PF02081 Tryptophan RNA-binding attenuator protein CJO35_12040 PF01227 GTP cyclohydrolase I CJO35_12045 PF00216 Bacterial DNA-binding protein CJO35_12050 PF09547 Stage IV sporulation protein A (spore_IV_A) CJO35_12060 PF10966 Protein of unknown function (DUF2768) CJO35_12070 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJO35_12070 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJO35_12075 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJO35_12075 PF01926 50S ribosome-binding GTPase CJO35_12085 PF14045 YIEGIA protein CJO35_12095 PF14140 YpzI-like protein CJO35_12100 PF01070 FMN-dependent dehydrogenase CJO35_12105 PF00575 S1 RNA binding domain CJO35_12110 PF02224 Cytidylate kinase CJO35_12115 PF17313 Family of unknown function (DUF5359) CJO35_12120 PF03413 Peptidase propeptide and YPEB domain CJO35_12120 PF14620 YpeB sporulation CJO35_12125 PF07486 Cell Wall Hydrolase CJO35_12125 PF01471 Putative peptidoglycan binding domain CJO35_12130 PF13367 PrsW family intramembrane metalloprotease CJO35_12135 PF17763 Glutaminase/Asparaginase C-terminal domain CJO35_12135 PF00710 Asparaginase, N-terminal CJO35_12145 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO35_12145 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJO35_12150 PF05389 Negative regulator of genetic competence (MecA) CJO35_12155 PF00149 Calcineurin-like phosphoesterase CJO35_12160 PF10864 Protein of unknown function (DUF2663) CJO35_12165 PF01476 LysM domain CJO35_12170 PF02517 CPBP intramembrane metalloprotease CJO35_12175 PF00270 DEAD/DEAH box helicase CJO35_12175 PF00271 Helicase conserved C-terminal domain CJO35_12180 PF14493 Helix-turn-helix domain CJO35_12190 PF12822 ECF transporter, substrate-specific component CJO35_12195 PF01842 ACT domain CJO35_12195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO35_12195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO35_12200 PF04225 Opacity-associated protein A LysM-like domain CJO35_12200 PF01551 Peptidase family M23 CJO35_12210 PF04542 Sigma-70 region 2 CJO35_12210 PF08281 Sigma-70, region 4 CJO35_12215 PF03816 Cell envelope-related transcriptional attenuator domain CJO35_12230 PF00512 His Kinase A (phospho-acceptor) domain CJO35_12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_12235 PF00486 Transcriptional regulatory protein, C terminal CJO35_12235 PF00072 Response regulator receiver domain CJO35_12240 PF00672 HAMP domain CJO35_12240 PF00989 PAS fold CJO35_12240 PF00512 His Kinase A (phospho-acceptor) domain CJO35_12240 PF18698 Histidine kinase sensor domain CJO35_12240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_12245 PF00072 Response regulator receiver domain CJO35_12245 PF00486 Transcriptional regulatory protein, C terminal CJO35_12250 PF01578 Cytochrome C assembly protein CJO35_12255 PF05140 ResB-like family CJO35_12260 PF00578 AhpC/TSA family CJO35_12265 PF01479 S4 domain CJO35_12265 PF00849 RNA pseudouridylate synthase CJO35_12270 PF07670 Nucleoside recognition CJO35_12275 PF07670 Nucleoside recognition CJO35_12280 PF00768 D-alanyl-D-alanine carboxypeptidase CJO35_12280 PF07943 Penicillin-binding protein 5, C-terminal domain CJO35_12285 PF13047 Protein of unknown function (DUF3907) CJO35_12290 PF04079 Segregation and condensation complex subunit ScpB CJO35_12295 PF02616 Segregation and condensation protein ScpA CJO35_12305 PF03745 Domain of unknown function (DUF309) CJO35_12310 PF00583 Acetyltransferase (GNAT) family CJO35_12315 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJO35_12320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJO35_12320 PF00925 GTP cyclohydrolase II CJO35_12325 PF00677 Lumazine binding domain CJO35_12330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJO35_12330 PF01872 RibD C-terminal domain CJO35_12340 PF00149 Calcineurin-like phosphoesterase CJO35_12345 PF00011 Hsp20/alpha crystallin family CJO35_12355 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_12360 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJO35_12365 PF06207 Protein of unknown function (DUF1002) CJO35_12370 PF05908 Poly-gamma-glutamate hydrolase CJO35_12375 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJO35_12375 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJO35_12385 PF03323 Bacillus/Clostridium GerA spore germination protein CJO35_12390 PF14097 Stage V sporulation protein AE1 CJO35_12395 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CJO35_12400 PF07451 Stage V sporulation protein AD (SpoVAD) CJO35_12405 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CJO35_12410 PF13782 Stage V sporulation protein AB CJO35_12415 PF12164 Stage V sporulation protein AA CJO35_12420 PF04542 Sigma-70 region 2 CJO35_12420 PF04539 Sigma-70 region 3 CJO35_12420 PF04545 Sigma-70, region 4 CJO35_12425 PF13581 Histidine kinase-like ATPase domain CJO35_12430 PF01740 STAS domain CJO35_12435 PF07943 Penicillin-binding protein 5, C-terminal domain CJO35_12435 PF00768 D-alanyl-D-alanine carboxypeptidase CJO35_12440 PF01048 Phosphorylase superfamily CJO35_12445 PF01676 Metalloenzyme superfamily CJO35_12450 PF02899 Phage integrase, N-terminal SAM-like domain CJO35_12450 PF00589 Phage integrase family CJO35_12455 PF14004 Protein of unknown function (DUF4227) CJO35_12460 PF01475 Ferric uptake regulator family CJO35_12465 PF01944 Stage II sporulation protein M CJO35_12470 PF02378 Phosphotransferase system, EIIC CJO35_12475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_12490 PF13673 Acetyltransferase (GNAT) domain CJO35_12500 PF00293 NUDIX domain CJO35_12505 PF13072 Mother cell inhibitor of FtsZ CJO35_12510 PF00440 Bacterial regulatory proteins, tetR family CJO35_12515 PF13564 DoxX-like family CJO35_12520 PF00248 Aldo/keto reductase family CJO35_12530 PF12146 Serine aminopeptidase, S33 CJO35_12535 PF10827 Protein of unknown function (DUF2552) CJO35_12540 PF01521 Iron-sulphur cluster biosynthesis CJO35_12555 PF03992 Antibiotic biosynthesis monooxygenase CJO35_12565 PF01674 Lipase (class 2) CJO35_12575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO35_12580 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_12585 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_12590 PF00005 ABC transporter CJO35_12595 PF00005 ABC transporter CJO35_12595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_12600 PF01554 MatE CJO35_12610 PF08863 YolD-like protein CJO35_12615 PF11799 impB/mucB/samB family C-terminal domain CJO35_12615 PF00817 impB/mucB/samB family CJO35_12615 PF11798 IMS family HHH motif CJO35_12620 PF14164 YqzH-like protein CJO35_12625 PF07690 Major Facilitator Superfamily CJO35_12635 PF00485 Phosphoribulokinase / Uridine kinase family CJO35_12650 PF00005 ABC transporter CJO35_12670 PF05908 Poly-gamma-glutamate hydrolase CJO35_12680 PF00106 short chain dehydrogenase CJO35_12685 PF00753 Metallo-beta-lactamase superfamily CJO35_12690 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJO35_12690 PF03807 NADP oxidoreductase coenzyme F420-dependent CJO35_12695 PF01546 Peptidase family M20/M25/M40 CJO35_12700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO35_12705 PF12146 Serine aminopeptidase, S33 CJO35_12710 PF00471 Ribosomal protein L33 CJO35_12715 PF00753 Metallo-beta-lactamase superfamily CJO35_12715 PF12706 Beta-lactamase superfamily domain CJO35_12720 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CJO35_12720 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CJO35_12735 PF16868 NMT1-like family CJO35_12740 PF07702 UTRA domain CJO35_12740 PF00392 Bacterial regulatory proteins, gntR family CJO35_12745 PF00232 Glycosyl hydrolase family 1 CJO35_12750 PF02378 Phosphotransferase system, EIIC CJO35_12755 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CJO35_12760 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_12765 PF00245 Alkaline phosphatase CJO35_12775 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CJO35_12775 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO35_12780 PF11798 IMS family HHH motif CJO35_12780 PF11799 impB/mucB/samB family C-terminal domain CJO35_12780 PF00817 impB/mucB/samB family CJO35_12790 PF02096 60Kd inner membrane protein CJO35_12795 PF07687 Peptidase dimerisation domain CJO35_12795 PF01546 Peptidase family M20/M25/M40 CJO35_12800 PF01039 Carboxyl transferase domain CJO35_12805 PF11728 Putative aromatic acid exporter C-terminal domain CJO35_12805 PF06081 Aromatic acid exporter family member 1 CJO35_12810 PF00005 ABC transporter CJO35_12815 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_12820 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO35_12825 PF06491 Disulphide isomerase CJO35_12830 PF00781 Diacylglycerol kinase catalytic domain CJO35_12835 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO35_12835 PF00364 Biotin-requiring enzyme CJO35_12835 PF02817 e3 binding domain CJO35_12840 PF02780 Transketolase, C-terminal domain CJO35_12840 PF02779 Transketolase, pyrimidine binding domain CJO35_12845 PF00676 Dehydrogenase E1 component CJO35_12850 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_12850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO35_12855 PF00871 Acetokinase family CJO35_12860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO35_12860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJO35_12865 PF01515 Phosphate acetyl/butaryl transferase CJO35_12870 PF02954 Bacterial regulatory protein, Fis family CJO35_12870 PF00989 PAS fold CJO35_12870 PF00158 Sigma-54 interaction domain CJO35_12875 PF11118 Protein of unknown function (DUF2627) CJO35_12880 PF03009 Glycerophosphoryl diester phosphodiesterase family CJO35_12885 PF01520 N-acetylmuramoyl-L-alanine amidase CJO35_12900 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_12900 PF06426 Serine acetyltransferase, N-terminal CJO35_12910 PF00072 Response regulator receiver domain CJO35_12910 PF08769 Sporulation initiation factor Spo0A C terminal CJO35_12915 PF17820 PDZ domain CJO35_12915 PF05580 SpoIVB peptidase S55 CJO35_12920 PF13476 AAA domain CJO35_12925 PF01316 Arginine repressor, DNA binding domain CJO35_12925 PF02863 Arginine repressor, C-terminal domain CJO35_12930 PF01479 S4 domain CJO35_12930 PF01728 FtsJ-like methyltransferase CJO35_12935 PF02779 Transketolase, pyrimidine binding domain CJO35_12935 PF02780 Transketolase, C-terminal domain CJO35_12935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJO35_12940 PF00348 Polyprenyl synthetase CJO35_12945 PF02609 Exonuclease VII small subunit CJO35_12950 PF02601 Exonuclease VII, large subunit CJO35_12950 PF13742 OB-fold nucleic acid binding domain CJO35_12955 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJO35_12955 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJO35_12960 PF01029 NusB family CJO35_12965 PF03780 Asp23 family, cell envelope-related function CJO35_12970 PF00289 Biotin carboxylase, N-terminal domain CJO35_12970 PF02785 Biotin carboxylase C-terminal domain CJO35_12970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO35_12975 PF00364 Biotin-requiring enzyme CJO35_12980 PF12685 SpoIIIAH-like protein CJO35_12990 PF09581 Stage III sporulation protein AF (Spore_III_AF) CJO35_12995 PF09546 Stage III sporulation protein AE (spore_III_AE) CJO35_13000 PF06686 Stage III sporulation protein AC/AD protein family CJO35_13005 PF06686 Stage III sporulation protein AC/AD protein family CJO35_13010 PF09548 Stage III sporulation protein AB (spore_III_AB) CJO35_13020 PF10942 Protein of unknown function (DUF2619) CJO35_13025 PF01132 Elongation factor P (EF-P) OB domain CJO35_13025 PF08207 Elongation factor P (EF-P) KOW-like domain CJO35_13025 PF09285 Elongation factor P, C-terminal CJO35_13030 PF01321 Creatinase/Prolidase N-terminal domain CJO35_13030 PF00557 Metallopeptidase family M24 CJO35_13035 PF01220 Dehydroquinase class II CJO35_13040 PF11085 Conserved membrane protein YqhR CJO35_13045 PF07136 Protein of unknown function (DUF1385) CJO35_13055 PF01734 Patatin-like phospholipase CJO35_13060 PF01325 Iron dependent repressor, N-terminal DNA binding domain CJO35_13060 PF02742 Iron dependent repressor, metal binding and dimerisation domain CJO35_13065 PF03099 Biotin/lipoate A/B protein ligase family CJO35_13070 PF00581 Rhodanese-like domain CJO35_13075 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CJO35_13080 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_13085 PF00571 CBS domain CJO35_13085 PF00005 ABC transporter CJO35_13090 PF02347 Glycine cleavage system P-protein CJO35_13095 PF02347 Glycine cleavage system P-protein CJO35_13100 PF08669 Glycine cleavage T-protein C-terminal barrel domain CJO35_13100 PF01571 Aminomethyltransferase folate-binding domain CJO35_13105 PF00271 Helicase conserved C-terminal domain CJO35_13105 PF00176 SNF2 family N-terminal domain CJO35_13110 PF11079 Bacterial protein YqhG of unknown function CJO35_13115 PF08671 Anti-repressor SinI CJO35_13120 PF08671 Anti-repressor SinI CJO35_13120 PF01381 Helix-turn-helix CJO35_13125 PF12389 Camelysin metallo-endopeptidase CJO35_13140 PF13028 Protein of unknown function (DUF3889) CJO35_13145 PF14038 YqzE-like protein CJO35_13155 PF15980 Putative Competence protein ComGF CJO35_13165 PF07963 Prokaryotic N-terminal methylation motif CJO35_13170 PF07963 Prokaryotic N-terminal methylation motif CJO35_13175 PF00482 Type II secretion system (T2SS), protein F CJO35_13180 PF00437 Type II/IV secretion system protein CJO35_13185 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain CJO35_13185 PF01740 STAS domain CJO35_13195 PF03960 ArsC family CJO35_13200 PF11117 Protein of unknown function (DUF2626) CJO35_13205 PF00753 Metallo-beta-lactamase superfamily CJO35_13210 PF10958 Protein of unknown function (DUF2759) CJO35_13215 PF01910 Thiamine-binding protein CJO35_13225 PF00246 Zinc carboxypeptidase CJO35_13230 PF01497 Periplasmic binding protein CJO35_13235 PF00884 Sulfatase CJO35_13240 PF00480 ROK family CJO35_13245 PF06014 Bacterial protein of unknown function (DUF910) CJO35_13250 PF03323 Bacillus/Clostridium GerA spore germination protein CJO35_13255 PF01694 Rhomboid family CJO35_13265 PF01812 5-formyltetrahydrofolate cyclo-ligase family CJO35_13270 PF00471 Ribosomal protein L33 CJO35_13275 PF13439 Glycosyltransferase Family 4 CJO35_13275 PF00534 Glycosyl transferases group 1 CJO35_13295 PF00005 ABC transporter CJO35_13300 PF00005 ABC transporter CJO35_13305 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_13310 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_13315 PF12849 PBP superfamily domain CJO35_13325 PF07690 Major Facilitator Superfamily CJO35_13330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJO35_13330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJO35_13335 PF04306 Protein of unknown function (DUF456) CJO35_13340 PF06691 Protein of unknown function (DUF1189) CJO35_13350 PF04551 GcpE protein CJO35_13365 PF01475 Ferric uptake regulator family CJO35_13370 PF00950 ABC 3 transport family CJO35_13375 PF00005 ABC transporter CJO35_13380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CJO35_13380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CJO35_13385 PF11116 Protein of unknown function (DUF2624) CJO35_13390 PF01261 Xylose isomerase-like TIM barrel CJO35_13395 PF00270 DEAD/DEAH box helicase CJO35_13395 PF00271 Helicase conserved C-terminal domain CJO35_13405 PF02401 LytB protein CJO35_13410 PF01784 NIF3 (NGG1p interacting factor 3) CJO35_13415 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CJO35_13420 PF04493 Endonuclease V CJO35_13425 PF04493 Endonuclease V CJO35_13470 PF04740 LXG domain of WXG superfamily CJO35_13470 PF14449 Pre-toxin TG CJO35_13470 PF14431 YwqJ-like deaminase CJO35_13485 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO35_13490 PF04545 Sigma-70, region 4 CJO35_13490 PF04542 Sigma-70 region 2 CJO35_13490 PF00140 Sigma-70 factor, region 1.2 CJO35_13490 PF03979 Sigma-70 factor, region 1.1 CJO35_13490 PF04539 Sigma-70 region 3 CJO35_13495 PF01807 CHC2 zinc finger CJO35_13495 PF08275 DNA primase catalytic core, N-terminal domain CJO35_13495 PF10410 DnaB-helicase binding domain of primase CJO35_13500 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CJO35_13505 PF03618 Kinase/pyrophosphorylase CJO35_13510 PF00571 CBS domain CJO35_13510 PF08279 HTH domain CJO35_13515 PF02092 Glycyl-tRNA synthetase beta subunit CJO35_13520 PF02091 Glycyl-tRNA synthetase alpha subunit CJO35_13525 PF02565 Recombination protein O C terminal CJO35_13525 PF11967 Recombination protein O N terminal CJO35_13530 PF14006 YqzL-like protein CJO35_13535 PF07650 KH domain CJO35_13535 PF01926 50S ribosome-binding GTPase CJO35_13540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJO35_13545 PF01219 Prokaryotic diacylglycerol kinase CJO35_13550 PF02130 Uncharacterized protein family UPF0054 CJO35_13555 PF01966 HD domain CJO35_13555 PF07698 7TM receptor with intracellular HD hydrolase CJO35_13555 PF07697 7TM-HD extracellular CJO35_13560 PF02562 PhoH-like protein CJO35_13565 PF06898 Putative stage IV sporulation protein YqfD CJO35_13570 PF07873 YabP family CJO35_13580 PF12127 SigmaW regulon antibacterial CJO35_13585 PF01957 NfeD-like C-terminal, partner-binding CJO35_13585 PF01972 Serine dehydrogenase proteinase CJO35_13590 PF09424 Yqey-like protein CJO35_13595 PF01165 Ribosomal protein S21 CJO35_13600 PF02690 Na+/Pi-cotransporter CJO35_13605 PF01791 DeoC/LacD family aldolase CJO35_13610 PF04055 Radical SAM superfamily CJO35_13610 PF01938 TRAM domain CJO35_13610 PF00919 Uncharacterized protein family UPF0004 CJO35_13615 PF04452 RNA methyltransferase CJO35_13625 PF01556 DnaJ C terminal domain CJO35_13625 PF00684 DnaJ central domain CJO35_13625 PF00226 DnaJ domain CJO35_13630 PF00012 Hsp70 protein CJO35_13635 PF01025 GrpE CJO35_13640 PF01628 HrcA protein C terminal domain CJO35_13645 PF04055 Radical SAM superfamily CJO35_13645 PF06969 HemN C-terminal domain CJO35_13650 PF00009 Elongation factor Tu GTP binding domain CJO35_13650 PF00679 Elongation factor G C-terminus CJO35_13650 PF03144 Elongation factor Tu domain 2 CJO35_13650 PF06421 GTP-binding protein LepA C-terminus CJO35_13655 PF12438 Protein of unknown function (DUF3679) CJO35_13660 PF07454 Stage II sporulation protein P (SpoIIP) CJO35_13665 PF03418 Germination protease CJO35_13670 PF01649 Ribosomal protein S20 CJO35_13675 PF06144 DNA polymerase III, delta subunit CJO35_13680 PF14141 YqzM-like protein CJO35_13685 PF13567 Domain of unknown function (DUF4131) CJO35_13685 PF00753 Metallo-beta-lactamase superfamily CJO35_13685 PF03772 Competence protein CJO35_13690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJO35_13695 PF10531 SLBB domain CJO35_13700 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJO35_13700 PF03807 NADP oxidoreductase coenzyme F420-dependent CJO35_13705 PF13649 Methyltransferase domain CJO35_13715 PF01966 HD domain CJO35_13720 PF01467 Cytidylyltransferase-like CJO35_13725 PF01985 CRS1 / YhbY (CRM) domain CJO35_13730 PF08501 Shikimate dehydrogenase substrate binding domain CJO35_13730 PF01488 Shikimate / quinate 5-dehydrogenase CJO35_13730 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJO35_13735 PF01926 50S ribosome-binding GTPase CJO35_13745 PF08970 Sporulation inhibitor A CJO35_13750 PF00657 GDSL-like Lipase/Acylhydrolase CJO35_13755 PF12746 GNAT acetyltransferase CJO35_13760 PF10057 Uncharacterized conserved protein (DUF2294) CJO35_13765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO35_13765 PF00384 Molybdopterin oxidoreductase CJO35_13765 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJO35_13765 PF01568 Molydopterin dinucleotide binding domain CJO35_13765 PF00037 4Fe-4S binding domain CJO35_13770 PF07849 Protein of unknown function (DUF1641) CJO35_13780 PF04542 Sigma-70 region 2 CJO35_13780 PF04545 Sigma-70, region 4 CJO35_13790 PF00005 ABC transporter CJO35_13805 PF07454 Stage II sporulation protein P (SpoIIP) CJO35_13815 PF04542 Sigma-70 region 2 CJO35_13815 PF04545 Sigma-70, region 4 CJO35_13835 PF17094 Uncharacterised protein family (UPF0715) CJO35_13860 PF16123 Hydroxyacylglutathione hydrolase C-terminus CJO35_13860 PF00753 Metallo-beta-lactamase superfamily CJO35_13870 PF00196 Bacterial regulatory proteins, luxR family CJO35_13870 PF00072 Response regulator receiver domain CJO35_13875 PF07730 Histidine kinase CJO35_13875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_13880 PF00085 Thioredoxin CJO35_13885 PF01925 Sulfite exporter TauE/SafE CJO35_13890 PF01206 Sulfurtransferase TusA CJO35_13895 PF00581 Rhodanese-like domain CJO35_13895 PF00753 Metallo-beta-lactamase superfamily CJO35_13900 PF01206 Sulfurtransferase TusA CJO35_13900 PF00581 Rhodanese-like domain CJO35_13905 PF13686 DsrE/DsrF/DrsH-like family CJO35_13910 PF02583 Metal-sensitive transcriptional repressor CJO35_13950 PF01809 Putative membrane protein insertion efficiency factor CJO35_13955 PF00490 Delta-aminolevulinic acid dehydratase CJO35_13960 PF01380 SIS domain CJO35_13965 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJO35_13970 PF01638 HxlR-like helix-turn-helix CJO35_13975 PF00487 Fatty acid desaturase CJO35_13980 PF07730 Histidine kinase CJO35_13985 PF00072 Response regulator receiver domain CJO35_13985 PF00196 Bacterial regulatory proteins, luxR family CJO35_13990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_13995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO35_14000 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_14010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_14010 PF00005 ABC transporter CJO35_14015 PF00005 ABC transporter CJO35_14015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO35_14030 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CJO35_14030 PF12833 Helix-turn-helix domain CJO35_14035 PF00106 short chain dehydrogenase CJO35_14050 PF00067 Cytochrome P450 CJO35_14055 PF01925 Sulfite exporter TauE/SafE CJO35_14070 PF00106 short chain dehydrogenase CJO35_14075 PF08244 Glycosyl hydrolases family 32 C terminal CJO35_14075 PF00251 Glycosyl hydrolases family 32 N-terminal domain CJO35_14080 PF03613 PTS system mannose/fructose/sorbose family IID component CJO35_14085 PF03609 PTS system sorbose-specific iic component CJO35_14090 PF03830 PTS system sorbose subfamily IIB component CJO35_14095 PF03610 PTS system fructose IIA component CJO35_14100 PF00874 PRD domain CJO35_14100 PF00158 Sigma-54 interaction domain CJO35_14100 PF03610 PTS system fructose IIA component CJO35_14110 PF14145 YrhK-like protein CJO35_14125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO35_14125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO35_14130 PF00248 Aldo/keto reductase family CJO35_14135 PF07690 Major Facilitator Superfamily CJO35_14140 PF01638 HxlR-like helix-turn-helix CJO35_14145 PF03575 Peptidase family S51 CJO35_14150 PF02602 Uroporphyrinogen-III synthase HemD CJO35_14160 PF01497 Periplasmic binding protein CJO35_14165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_14165 PF03466 LysR substrate binding domain CJO35_14170 PF07690 Major Facilitator Superfamily CJO35_14180 PF00067 Cytochrome P450 CJO35_14180 PF00175 Oxidoreductase NAD-binding domain CJO35_14180 PF00667 FAD binding domain CJO35_14180 PF00258 Flavodoxin CJO35_14185 PF16295 Tetracyclin repressor-like, C-terminal domain CJO35_14185 PF00440 Bacterial regulatory proteins, tetR family CJO35_14190 PF17936 Bacterial Ig domain CJO35_14190 PF00082 Subtilase family CJO35_14195 PF08241 Methyltransferase domain CJO35_14210 PF09501 Probable sporulation protein (Bac_small_yrzI) CJO35_14215 PF14143 YrhC-like protein CJO35_14220 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO35_14225 PF00291 Pyridoxal-phosphate dependent enzyme CJO35_14230 PF01048 Phosphorylase superfamily CJO35_14235 PF13649 Methyltransferase domain CJO35_14240 PF10750 Protein of unknown function (DUF2536) CJO35_14245 PF07423 Domain of unknown function (DUF1510) CJO35_14250 PF03717 Penicillin-binding Protein dimerisation domain CJO35_14250 PF00905 Penicillin binding protein transpeptidase domain CJO35_14255 PF03449 Transcription elongation factor, N-terminal CJO35_14255 PF01272 Transcription elongation factor, GreA/GreB, C-term CJO35_14260 PF00485 Phosphoribulokinase / Uridine kinase family CJO35_14280 PF02618 YceG-like family CJO35_14285 PF06949 Protein of unknown function (DUF1292) CJO35_14290 PF03652 Holliday junction resolvase CJO35_14295 PF06135 IreB regulatory phosphoprotein CJO35_14300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO35_14300 PF01411 tRNA synthetases class II (A) CJO35_14300 PF02272 DHHA1 domain CJO35_14305 PF01594 AI-2E family transporter CJO35_14310 PF13056 Protein of unknown function (DUF3918) CJO35_14320 PF05239 PRC-barrel domain CJO35_14325 PF13538 UvrD-like helicase C-terminal domain CJO35_14325 PF14490 Helix-hairpin-helix containing domain CJO35_14325 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CJO35_14330 PF07719 Tetratricopeptide repeat CJO35_14330 PF13181 Tetratricopeptide repeat CJO35_14340 PF00266 Aminotransferase class-V CJO35_14345 PF02082 Transcriptional regulator CJO35_14350 PF16193 AAA C-terminal domain CJO35_14350 PF12002 MgsA AAA+ ATPase C terminal CJO35_14350 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJO35_14355 PF00899 ThiF family CJO35_14365 PF02938 GAD domain CJO35_14365 PF01336 OB-fold nucleic acid binding domain CJO35_14365 PF00152 tRNA synthetases class II (D, K and N) CJO35_14370 PF13393 Histidyl-tRNA synthetase CJO35_14370 PF03129 Anticodon binding domain CJO35_14380 PF08239 Bacterial SH3 domain CJO35_14380 PF01520 N-acetylmuramoyl-L-alanine amidase CJO35_14385 PF02580 D-Tyr-tRNA(Tyr) deacylase CJO35_14390 PF13291 ACT domain CJO35_14390 PF04607 Region found in RelA / SpoT proteins CJO35_14390 PF02824 TGS domain CJO35_14395 PF00156 Phosphoribosyl transferase domain CJO35_14400 PF01368 DHH family CJO35_14400 PF02272 DHHA1 domain CJO35_14400 PF17768 RecJ OB domain CJO35_14400 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CJO35_14405 PF06305 Lipopolysaccharide assembly protein A domain CJO35_14410 PF02355 Protein export membrane protein CJO35_14410 PF07549 SecD/SecF GG Motif CJO35_14415 PF13797 Post-transcriptional regulator CJO35_14420 PF01943 Polysaccharide biosynthesis protein CJO35_14420 PF14667 Polysaccharide biosynthesis C-terminal domain CJO35_14425 PF04239 Protein of unknown function (DUF421) CJO35_14430 PF12670 Protein of unknown function (DUF3792) CJO35_14435 PF02699 Preprotein translocase subunit CJO35_14440 PF01702 Queuine tRNA-ribosyltransferase CJO35_14445 PF02547 Queuosine biosynthesis protein CJO35_14450 PF11146 Protein of unknown function (DUF2905) CJO35_14455 PF17864 RuvB AAA lid domain CJO35_14455 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJO35_14455 PF05491 RuvB C-terminal winged helix domain CJO35_14460 PF01330 RuvA N terminal domain CJO35_14460 PF07499 RuvA, C-terminal domain CJO35_14465 PF08977 Bypass of Forespore C, N terminal CJO35_14465 PF08955 BofC C-terminal domain CJO35_14475 PF08141 Small acid-soluble spore protein H family CJO35_14480 PF05163 DinB family CJO35_14485 PF05908 Poly-gamma-glutamate hydrolase CJO35_14500 PF01709 Transcriptional regulator CJO35_14505 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CJO35_14510 PF01476 LysM domain CJO35_14515 PF02445 Quinolinate synthetase A protein CJO35_14520 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CJO35_14520 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJO35_14525 PF00890 FAD binding domain CJO35_14525 PF02910 Fumarate reductase flavoprotein C-term CJO35_14530 PF00266 Aminotransferase class-V CJO35_14535 PF02829 3H domain CJO35_14535 PF08279 HTH domain CJO35_14540 PF00800 Prephenate dehydratase CJO35_14540 PF01842 ACT domain CJO35_14545 PF01842 ACT domain CJO35_14550 PF01926 50S ribosome-binding GTPase CJO35_14550 PF09269 Domain of unknown function (DUF1967) CJO35_14550 PF01018 GTP1/OBG CJO35_14555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CJO35_14555 PF14682 Sporulation initiation phospho-transferase B, C-terminal CJO35_14560 PF01016 Ribosomal L27 protein CJO35_14565 PF04327 Cysteine protease Prp CJO35_14570 PF00829 Ribosomal prokaryotic L21 protein CJO35_14575 PF02163 Peptidase family M50 CJO35_14580 PF01551 Peptidase family M23 CJO35_14585 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CJO35_14590 PF01022 Bacterial regulatory protein, arsR family CJO35_14595 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJO35_14600 PF03775 Septum formation inhibitor MinC, C-terminal domain CJO35_14605 PF04093 rod shape-determining protein MreD CJO35_14610 PF04085 rod shape-determining protein MreC CJO35_14625 PF02545 Maf-like protein CJO35_14630 PF05036 Sporulation related domain CJO35_14635 PF06750 Bacterial Peptidase A24 N-terminal domain CJO35_14635 PF01478 Type IV leader peptidase family CJO35_14640 PF02875 Mur ligase family, glutamate ligase domain CJO35_14640 PF08245 Mur ligase middle domain CJO35_14645 PF08264 Anticodon-binding domain of tRNA CJO35_14645 PF10458 Valyl tRNA synthetase tRNA binding arm CJO35_14645 PF00133 tRNA synthetases class I (I, L, M and V) CJO35_14660 PF01476 LysM domain CJO35_14665 PF00202 Aminotransferase class-III CJO35_14670 PF00490 Delta-aminolevulinic acid dehydratase CJO35_14675 PF02602 Uroporphyrinogen-III synthase HemD CJO35_14680 PF03900 Porphobilinogen deaminase, C-terminal domain CJO35_14680 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJO35_14685 PF01578 Cytochrome C assembly protein CJO35_14690 PF01488 Shikimate / quinate 5-dehydrogenase CJO35_14690 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJO35_14690 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJO35_14700 PF01926 50S ribosome-binding GTPase CJO35_14705 PF00004 ATPase family associated with various cellular activities (AAA) CJO35_14705 PF05362 Lon protease (S16) C-terminal proteolytic domain CJO35_14705 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJO35_14710 PF05362 Lon protease (S16) C-terminal proteolytic domain CJO35_14710 PF00004 ATPase family associated with various cellular activities (AAA) CJO35_14715 PF06689 ClpX C4-type zinc finger CJO35_14715 PF07724 AAA domain (Cdc48 subfamily) CJO35_14715 PF10431 C-terminal, D2-small domain, of ClpB protein CJO35_14720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO35_14720 PF05698 Bacterial trigger factor protein (TF) C-terminus CJO35_14720 PF05697 Bacterial trigger factor protein (TF) CJO35_14730 PF00694 Aconitase C-terminal domain CJO35_14735 PF00330 Aconitase family (aconitate hydratase) CJO35_14740 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO35_14745 PF08502 LeuA allosteric (dimerisation) domain CJO35_14745 PF00682 HMGL-like CJO35_14750 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJO35_14750 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJO35_14755 PF10369 Small subunit of acetolactate synthase CJO35_14755 PF01842 ACT domain CJO35_14760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO35_14760 PF00205 Thiamine pyrophosphate enzyme, central domain CJO35_14760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO35_14765 PF01063 Amino-transferase class IV CJO35_14775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJO35_14775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO35_14795 PF04860 Phage portal protein CJO35_14830 PF01381 Helix-turn-helix CJO35_14830 PF00145 C-5 cytosine-specific DNA methylase CJO35_14845 PF04634 Protein of unknown function, DUF600 CJO35_14850 PF04740 LXG domain of WXG superfamily CJO35_14855 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_14875 PF12850 Calcineurin-like phosphoesterase superfamily domain CJO35_14880 PF01725 Ham1 family CJO35_14885 PF01138 3' exoribonuclease family, domain 1 CJO35_14885 PF03725 3' exoribonuclease family, domain 2 CJO35_14890 PF10646 Sporulation and spore germination CJO35_14895 PF01177 Asp/Glu/Hydantoin racemase CJO35_14900 PF01047 MarR family CJO35_14905 PF00196 Bacterial regulatory proteins, luxR family CJO35_14910 PF00106 short chain dehydrogenase CJO35_14915 PF03061 Thioesterase superfamily CJO35_14920 PF13183 4Fe-4S dicluster domain CJO35_14920 PF13085 2Fe-2S iron-sulfur cluster binding domain CJO35_14925 PF00890 FAD binding domain CJO35_14925 PF02910 Fumarate reductase flavoprotein C-term CJO35_14930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJO35_14935 PF10702 Protein of unknown function (DUF2507) CJO35_14940 PF00696 Amino acid kinase family CJO35_14940 PF13840 ACT domain CJO35_14940 PF01842 ACT domain CJO35_14945 PF01541 GIY-YIG catalytic domain CJO35_14945 PF08459 UvrC Helix-hairpin-helix N-terminal CJO35_14945 PF02151 UvrB/uvrC motif CJO35_14950 PF00085 Thioredoxin CJO35_14955 PF01012 Electron transfer flavoprotein domain CJO35_14955 PF00766 Electron transfer flavoprotein FAD-binding domain CJO35_14960 PF01012 Electron transfer flavoprotein domain CJO35_14965 PF00378 Enoyl-CoA hydratase/isomerase CJO35_14970 PF08359 YsiA-like protein, C-terminal region CJO35_14970 PF00440 Bacterial regulatory proteins, tetR family CJO35_14975 PF13193 AMP-binding enzyme C-terminal domain CJO35_14975 PF00501 AMP-binding enzyme CJO35_14980 PF03994 Domain of Unknown Function (DUF350) CJO35_14985 PF00488 MutS domain V CJO35_14985 PF01713 Smr domain CJO35_14990 PF14716 Helix-hairpin-helix domain CJO35_14990 PF14791 DNA polymerase beta thumb CJO35_14990 PF02811 PHP domain CJO35_14995 PF02674 Colicin V production protein CJO35_15000 PF05164 Cell division protein ZapA CJO35_15005 PF01351 Ribonuclease HII CJO35_15005 PF11858 Domain of unknown function (DUF3378) CJO35_15030 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO35_15030 PF00005 ABC transporter CJO35_15045 PF03484 tRNA synthetase B5 domain CJO35_15045 PF01588 Putative tRNA binding domain CJO35_15045 PF03483 B3/4 domain CJO35_15045 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJO35_15045 PF03147 Ferredoxin-fold anticodon binding domain CJO35_15050 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJO35_15050 PF01409 tRNA synthetases class II core domain (F) CJO35_15055 PF00588 SpoU rRNA Methylase family CJO35_15055 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJO35_15060 PF14098 Small, acid-soluble spore protein I CJO35_15065 PF13722 5TM C-terminal transporter carbon starvation CstA CJO35_15065 PF02554 Carbon starvation protein CstA CJO35_15075 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CJO35_15080 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_15085 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_15090 PF01547 Bacterial extracellular solute-binding protein CJO35_15095 PF13685 Iron-containing alcohol dehydrogenase CJO35_15100 PF00596 Class II Aldolase and Adducin N-terminal domain CJO35_15105 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO35_15105 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO35_15110 PF11762 L-arabinose isomerase C-terminal domain CJO35_15110 PF02610 L-arabinose isomerase CJO35_15115 PF04616 Glycosyl hydrolases family 43 CJO35_15120 PF05343 M42 glutamyl aminopeptidase CJO35_15130 PF06961 Protein of unknown function (DUF1294) CJO35_15135 PF00453 Ribosomal protein L20 CJO35_15140 PF01632 Ribosomal protein L35 CJO35_15145 PF00707 Translation initiation factor IF-3, C-terminal domain CJO35_15145 PF05198 Translation initiation factor IF-3, N-terminal domain CJO35_15150 PF04172 LrgB-like family CJO35_15155 PF03788 LrgA family CJO35_15160 PF16655 PhoD-like phosphatase, N-terminal domain CJO35_15160 PF09423 PhoD-like phosphatase CJO35_15165 PF00072 Response regulator receiver domain CJO35_15165 PF04397 LytTr DNA-binding domain CJO35_15170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_15170 PF07694 5TMR of 5TMR-LYT CJO35_15170 PF06580 Histidine kinase CJO35_15185 PF03129 Anticodon binding domain CJO35_15185 PF02824 TGS domain CJO35_15185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO35_15185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO35_15190 PF08812 YtxC-like family CJO35_15195 PF09335 SNARE associated Golgi protein CJO35_15200 PF07319 Primosomal protein DnaI N-terminus CJO35_15200 PF01695 IstB-like ATP binding protein CJO35_15205 PF07261 Replication initiation and membrane attachment CJO35_15210 PF03477 ATP cone domain CJO35_15225 PF02675 S-adenosylmethionine decarboxylase CJO35_15230 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJO35_15230 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJO35_15235 PF00544 Pectate lyase CJO35_15240 PF01121 Dephospho-CoA kinase CJO35_15245 PF02659 Putative manganese efflux pump CJO35_15250 PF06827 Zinc finger found in FPG and IleRS CJO35_15250 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CJO35_15250 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CJO35_15255 PF00476 DNA polymerase family A CJO35_15255 PF01367 5'-3' exonuclease, C-terminal SAM fold CJO35_15255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJO35_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_15260 PF16736 Single Cache-like CJO35_15260 PF00512 His Kinase A (phospho-acceptor) domain CJO35_15260 PF00989 PAS fold CJO35_15265 PF00486 Transcriptional regulatory protein, C terminal CJO35_15265 PF00072 Response regulator receiver domain CJO35_15270 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJO35_15270 PF00056 lactate/malate dehydrogenase, NAD binding domain CJO35_15275 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO35_15280 PF00285 Citrate synthase, C-terminal domain CJO35_15285 PF04284 Protein of unknown function (DUF441) CJO35_15290 PF01594 AI-2E family transporter CJO35_15295 PF04186 FxsA cytoplasmic membrane protein CJO35_15300 PF02887 Pyruvate kinase, alpha/beta domain CJO35_15300 PF00391 PEP-utilising enzyme, mobile domain CJO35_15300 PF00224 Pyruvate kinase, barrel domain CJO35_15305 PF00365 Phosphofructokinase CJO35_15310 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJO35_15315 PF17848 Acetyl-coA carboxylase zinc finger domain CJO35_15315 PF01039 Carboxyl transferase domain CJO35_15320 PF00390 Malic enzyme, N-terminal domain CJO35_15320 PF03949 Malic enzyme, NAD binding domain CJO35_15325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJO35_15325 PF02811 PHP domain CJO35_15325 PF14579 Helix-hairpin-helix motif CJO35_15325 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJO35_15325 PF01336 OB-fold nucleic acid binding domain CJO35_15330 PF14034 Sporulation protein YtrH CJO35_15345 PF01368 DHH family CJO35_15345 PF02272 DHHA1 domain CJO35_15350 PF14007 YtpI-like protein CJO35_15355 PF00392 Bacterial regulatory proteins, gntR family CJO35_15355 PF07085 DRTGG domain CJO35_15355 PF00571 CBS domain CJO35_15355 PF03061 Thioesterase superfamily CJO35_15360 PF03551 Transcriptional regulator PadR-like family CJO35_15360 PF10400 Virulence activator alpha C-term CJO35_15375 PF14698 Argininosuccinate lyase C-terminal CJO35_15375 PF00206 Lyase CJO35_15380 PF00764 Arginosuccinate synthase CJO35_15385 PF00994 Probable molybdopterin binding domain CJO35_15390 PF00871 Acetokinase family CJO35_15395 PF02384 N-6 DNA Methylase CJO35_15400 PF08534 Redoxin CJO35_15405 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CJO35_15410 PF11167 Protein of unknown function (DUF2953) CJO35_15415 PF06271 RDD family CJO35_15420 PF01343 Peptidase family S49 CJO35_15425 PF01513 ATP-NAD kinase CJO35_15435 PF07690 Major Facilitator Superfamily CJO35_15445 PF13193 AMP-binding enzyme C-terminal domain CJO35_15445 PF00501 AMP-binding enzyme CJO35_15450 PF00269 Small, acid-soluble spore proteins, alpha/beta type CJO35_15455 PF02568 Thiamine biosynthesis protein (ThiI) CJO35_15455 PF02926 THUMP domain CJO35_15460 PF00266 Aminotransferase class-V CJO35_15465 PF05525 Branched-chain amino acid transport protein CJO35_15470 PF06160 Septation ring formation regulator, EzrA CJO35_15475 PF02811 PHP domain CJO35_15480 PF00440 Bacterial regulatory proteins, tetR family CJO35_15485 PF13185 GAF domain CJO35_15500 PF00163 Ribosomal protein S4/S9 N-terminal domain CJO35_15500 PF01479 S4 domain CJO35_15515 PF05656 Protein of unknown function (DUF805) CJO35_15520 PF12706 Beta-lactamase superfamily domain CJO35_15525 PF01037 Lrp/AsnC ligand binding domain CJO35_15530 PF01479 S4 domain CJO35_15530 PF00579 tRNA synthetases class I (W and Y) CJO35_15535 PF00501 AMP-binding enzyme CJO35_15535 PF13193 AMP-binding enzyme C-terminal domain CJO35_15540 PF00583 Acetyltransferase (GNAT) family CJO35_15545 PF00571 CBS domain CJO35_15550 PF00850 Histone deacetylase domain CJO35_15555 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJO35_15555 PF00691 OmpA family CJO35_15560 PF01618 MotA/TolQ/ExbB proton channel family CJO35_15565 PF00356 Bacterial regulatory proteins, lacI family CJO35_15570 PF01817 Chorismate mutase type II CJO35_15570 PF00793 DAHP synthetase I family CJO35_15580 PF11009 Protein of unknown function (DUF2847) CJO35_15585 PF12732 YtxH-like protein CJO35_15590 PF06103 Bacterial protein of unknown function (DUF948) CJO35_15595 PF08245 Mur ligase middle domain CJO35_15595 PF01225 Mur ligase family, catalytic domain CJO35_15595 PF02875 Mur ligase family, glutamate ligase domain CJO35_15600 PF17854 FtsK alpha domain CJO35_15600 PF01580 FtsK/SpoIIIE family CJO35_15600 PF09397 Ftsk gamma domain CJO35_15605 PF14794 Domain of unknown function (DUF4479) CJO35_15605 PF01588 Putative tRNA binding domain CJO35_15610 PF07285 Protein of unknown function (DUF1444) CJO35_15615 PF00085 Thioredoxin CJO35_15620 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ CJO35_15625 PF05343 M42 glutamyl aminopeptidase CJO35_15630 PF03413 Peptidase propeptide and YPEB domain CJO35_15635 PF03949 Malic enzyme, NAD binding domain CJO35_15635 PF00390 Malic enzyme, N-terminal domain CJO35_15640 PF00753 Metallo-beta-lactamase superfamily CJO35_15645 PF02390 Putative methyltransferase CJO35_15650 PF14165 YtzH-like protein CJO35_15655 PF01636 Phosphotransferase enzyme family CJO35_15660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJO35_15660 PF17999 Pullulanase N1-terminal domain CJO35_15660 PF00128 Alpha amylase, catalytic domain CJO35_15665 PF00781 Diacylglycerol kinase catalytic domain CJO35_15680 PF00291 Pyridoxal-phosphate dependent enzyme CJO35_15695 PF01546 Peptidase family M20/M25/M40 CJO35_15700 PF00860 Permease family CJO35_15705 PF08220 DeoR-like helix-turn-helix domain CJO35_15710 PF01479 S4 domain CJO35_15710 PF00849 RNA pseudouridylate synthase CJO35_15715 PF01943 Polysaccharide biosynthesis protein CJO35_15715 PF14667 Polysaccharide biosynthesis C-terminal domain CJO35_15725 PF02028 BCCT, betaine/carnitine/choline family transporter CJO35_15730 PF10957 Sporulation protein Cse60 CJO35_15735 PF00581 Rhodanese-like domain CJO35_15750 PF04854 Protein of unknown function, DUF624 CJO35_15755 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO35_15755 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO35_15765 PF07470 Glycosyl Hydrolase Family 88 CJO35_15770 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_15775 PF12833 Helix-turn-helix domain CJO35_15775 PF17853 GGDEF-like domain CJO35_15780 PF13416 Bacterial extracellular solute-binding protein CJO35_15785 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_15790 PF01370 NAD dependent epimerase/dehydratase family CJO35_15795 PF01738 Dienelactone hydrolase family CJO35_15805 PF03466 LysR substrate binding domain CJO35_15805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_15810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_15815 PF08264 Anticodon-binding domain of tRNA CJO35_15815 PF00133 tRNA synthetases class I (I, L, M and V) CJO35_15815 PF13603 Leucyl-tRNA synthetase, Domain 2 CJO35_15815 PF09334 tRNA synthetases class I (M) CJO35_15820 PF14074 Protein of unknown function (DUF4257) CJO35_15825 PF07690 Major Facilitator Superfamily CJO35_15830 PF03180 NLPA lipoprotein CJO35_15835 PF04791 LMBR1-like membrane protein CJO35_15840 PF02687 FtsX-like permease family CJO35_15840 PF12704 MacB-like periplasmic core domain CJO35_15845 PF00005 ABC transporter CJO35_15855 PF00005 ABC transporter CJO35_15860 PF00392 Bacterial regulatory proteins, gntR family CJO35_15865 PF10732 Protein of unknown function (DUF2524) CJO35_15870 PF16199 Radical_SAM C-terminal domain CJO35_15870 PF04055 Radical SAM superfamily CJO35_15875 PF06962 Putative rRNA methylase CJO35_15880 PF00375 Sodium:dicarboxylate symporter family CJO35_15885 PF10776 Protein of unknown function (DUF2600) CJO35_15890 PF12146 Serine aminopeptidase, S33 CJO35_15895 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_15900 PF01569 PAP2 superfamily CJO35_15905 PF00534 Glycosyl transferases group 1 CJO35_15905 PF13439 Glycosyltransferase Family 4 CJO35_15910 PF00733 Asparagine synthase CJO35_15910 PF13537 Glutamine amidotransferase domain CJO35_15915 PF02772 S-adenosylmethionine synthetase, central domain CJO35_15915 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJO35_15915 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJO35_15920 PF01293 Phosphoenolpyruvate carboxykinase CJO35_15925 PF00375 Sodium:dicarboxylate symporter family CJO35_15930 PF10763 Protein of unknown function (DUF2584) CJO35_15935 PF00326 Prolyl oligopeptidase family CJO35_15945 PF00005 ABC transporter CJO35_15950 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_15955 PF00293 NUDIX domain CJO35_15965 PF05105 Bacteriophage holin family CJO35_15970 PF00210 Ferritin-like domain CJO35_15980 PF13115 YtkA-like CJO35_15985 PF02664 S-Ribosylhomocysteinase (LuxS) CJO35_15990 PF01809 Putative membrane protein insertion efficiency factor CJO35_15995 PF00484 Carbonic anhydrase CJO35_16000 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO35_16000 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO35_16005 PF01297 Zinc-uptake complex component A periplasmic CJO35_16010 PF01197 Ribosomal protein L31 CJO35_16015 PF01654 Cytochrome bd terminal oxidase subunit I CJO35_16020 PF02322 Cytochrome bd terminal oxidase subunit II CJO35_16025 PF07561 Domain of Unknown Function (DUF1540) CJO35_16035 PF13378 Enolase C-terminal domain-like CJO35_16035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO35_16040 PF13193 AMP-binding enzyme C-terminal domain CJO35_16040 PF00501 AMP-binding enzyme CJO35_16045 PF00378 Enoyl-CoA hydratase/isomerase CJO35_16050 PF00561 alpha/beta hydrolase fold CJO35_16055 PF16582 Middle domain of thiamine pyrophosphate CJO35_16055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO35_16055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO35_16060 PF00425 chorismate binding enzyme CJO35_16065 PF01040 UbiA prenyltransferase family CJO35_16070 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJO35_16075 PF00343 Carbohydrate phosphorylase CJO35_16080 PF08323 Starch synthase catalytic domain CJO35_16080 PF00534 Glycosyl transferases group 1 CJO35_16085 PF00483 Nucleotidyl transferase CJO35_16090 PF00483 Nucleotidyl transferase CJO35_16095 PF00128 Alpha amylase, catalytic domain CJO35_16095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJO35_16095 PF02806 Alpha amylase, C-terminal all-beta domain CJO35_16220 PF00392 Bacterial regulatory proteins, gntR family CJO35_16225 PF09515 Thiamine transporter protein (Thia_YuaJ) CJO35_16230 PF04203 Sortase domain CJO35_16245 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_16250 PF01470 Pyroglutamyl peptidase CJO35_16255 PF02080 TrkA-C domain CJO35_16255 PF02254 TrkA-N domain CJO35_16260 PF02386 Cation transport protein CJO35_16270 PF12867 DinB superfamily CJO35_16280 PF00465 Iron-containing alcohol dehydrogenase CJO35_16300 PF04072 Leucine carboxyl methyltransferase CJO35_16305 PF00842 Alanine racemase, C-terminal domain CJO35_16305 PF01168 Alanine racemase, N-terminal domain CJO35_16310 PF00190 Cupin CJO35_16340 PF03747 ADP-ribosylglycohydrolase CJO35_16375 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) CJO35_16385 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CJO35_16395 PF00149 Calcineurin-like phosphoesterase CJO35_16400 PF02673 Bacitracin resistance protein BacA CJO35_16405 PF01594 AI-2E family transporter CJO35_16410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO35_16410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO35_16415 PF01965 DJ-1/PfpI family CJO35_16420 PF02743 Cache domain CJO35_16420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_16420 PF00672 HAMP domain CJO35_16425 PF02743 Cache domain CJO35_16425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_16425 PF00672 HAMP domain CJO35_16430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_16430 PF00672 HAMP domain CJO35_16430 PF02743 Cache domain CJO35_16440 PF03060 Nitronate monooxygenase CJO35_16445 PF01894 Uncharacterised protein family UPF0047 CJO35_16450 PF16657 Maltogenic Amylase, C-terminal domain CJO35_16450 PF00128 Alpha amylase, catalytic domain CJO35_16465 PF01670 Glycosyl hydrolase family 12 CJO35_16470 PF03471 Transporter associated domain CJO35_16470 PF01595 Cyclin M transmembrane N-terminal domain CJO35_16470 PF00571 CBS domain CJO35_16475 PF04298 Putative neutral zinc metallopeptidase CJO35_16480 PF11458 Membrane-integrating protein Mistic CJO35_16485 PF07885 Ion channel CJO35_16485 PF02254 TrkA-N domain CJO35_16490 PF08868 YugN-like family CJO35_16500 PF03073 TspO/MBR family CJO35_16505 PF13302 Acetyltransferase (GNAT) domain CJO35_16510 PF00342 Phosphoglucose isomerase CJO35_16515 PF00465 Iron-containing alcohol dehydrogenase CJO35_16520 PF04070 Domain of unknown function (DUF378) CJO35_16525 PF00575 S1 RNA binding domain CJO35_16530 PF00155 Aminotransferase class I and II CJO35_16535 PF01037 Lrp/AsnC ligand binding domain CJO35_16540 PF08386 TAP-like protein CJO35_16540 PF00561 alpha/beta hydrolase fold CJO35_16545 PF08958 Domain of unknown function (DUF1871) CJO35_16555 PF00155 Aminotransferase class I and II CJO35_16565 PF08810 Kinase associated protein B CJO35_16570 PF00929 Exonuclease CJO35_16575 PF07690 Major Facilitator Superfamily CJO35_16580 PF00912 Transglycosylase CJO35_16580 PF00905 Penicillin binding protein transpeptidase domain CJO35_16585 PF04134 Protein of unknown function, DUF393 CJO35_16590 PF17328 Family of unknown function (DUF5366) CJO35_16595 PF00989 PAS fold CJO35_16595 PF17203 Single cache domain 3 CJO35_16595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_16595 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CJO35_16600 PF00072 Response regulator receiver domain CJO35_16610 PF01066 CDP-alcohol phosphatidyltransferase CJO35_16615 PF09335 SNARE associated Golgi protein CJO35_16620 PF02666 Phosphatidylserine decarboxylase CJO35_16625 PF03390 2-hydroxycarboxylate transporter family CJO35_16635 PF13244 Domain of unknown function (DUF4040) CJO35_16635 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJO35_16635 PF00361 Proton-conducting membrane transporter CJO35_16640 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CJO35_16645 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJO35_16650 PF00361 Proton-conducting membrane transporter CJO35_16655 PF01899 Na+/H+ ion antiporter subunit CJO35_16660 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CJO35_16665 PF03334 Na+/H+ antiporter subunit CJO35_16670 PF03061 Thioesterase superfamily CJO35_16675 PF00196 Bacterial regulatory proteins, luxR family CJO35_16675 PF00072 Response regulator receiver domain CJO35_16680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_16680 PF07730 Histidine kinase CJO35_16690 PF00348 Polyprenyl synthetase CJO35_16695 PF08181 DegQ (SacQ) family CJO35_16710 PF08668 HDOD domain CJO35_16710 PF00563 EAL domain CJO35_16715 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJO35_16715 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CJO35_16715 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJO35_16720 PF00857 Isochorismatase family CJO35_16725 PF07997 Protein of unknown function (DUF1694) CJO35_16730 PF14166 YueH-like protein CJO35_16740 PF01594 AI-2E family transporter CJO35_16745 PF02082 Transcriptional regulator CJO35_16750 PF07859 alpha/beta hydrolase fold CJO35_16750 PF00331 Glycosyl hydrolase family 10 CJO35_16760 PF01966 HD domain CJO35_16765 PF00106 short chain dehydrogenase CJO35_16770 PF17355 Family of unknown function (DUF5383) CJO35_16780 PF12538 DNA transporter CJO35_16780 PF01580 FtsK/SpoIIIE family CJO35_16785 PF10140 WXG100 protein secretion system (Wss), protein YukC CJO35_16790 PF08817 WXG100 protein secretion system (Wss), protein YukD CJO35_16795 PF06013 Proteins of 100 residues with WXG CJO35_16800 PF01235 Sodium:alanine symporter family CJO35_16805 PF06018 CodY GAF-like domain CJO35_16805 PF13556 PucR C-terminal helix-turn-helix domain CJO35_16805 PF17853 GGDEF-like domain CJO35_16810 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJO35_16810 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJO35_16820 PF00174 Oxidoreductase molybdopterin binding domain CJO35_16825 PF02632 BioY family CJO35_16830 PF03553 Na+/H+ antiporter family CJO35_16830 PF13726 Na+-H+ antiporter family CJO35_16835 PF02789 Cytosol aminopeptidase family, N-terminal domain CJO35_16835 PF00883 Cytosol aminopeptidase family, catalytic domain CJO35_16840 PF02681 Divergent PAP2 family CJO35_16845 PF06725 3D domain CJO35_16850 PF14068 Putative membrane protein CJO35_16855 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_16860 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_16870 PF14169 Cold-inducible protein YdjO CJO35_16875 PF00583 Acetyltransferase (GNAT) family CJO35_16880 PF01521 Iron-sulphur cluster biosynthesis CJO35_16885 PF01678 Diaminopimelate epimerase CJO35_16890 PF07662 Na+ dependent nucleoside transporter C-terminus CJO35_16890 PF01773 Na+ dependent nucleoside transporter N-terminus CJO35_16895 PF07293 Protein of unknown function (DUF1450) CJO35_16900 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_16905 PF08818 Domain of unknown function (DU1801) CJO35_16915 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_16930 PF07315 Protein of unknown function (DUF1462) CJO35_16935 PF01106 NifU-like domain CJO35_16940 PF00326 Prolyl oligopeptidase family CJO35_16940 PF07676 WD40-like Beta Propeller Repeat CJO35_16945 PF08544 GHMP kinases C terminal CJO35_16945 PF00288 GHMP kinases N terminal domain CJO35_16950 PF00291 Pyridoxal-phosphate dependent enzyme CJO35_16955 PF01842 ACT domain CJO35_16955 PF00742 Homoserine dehydrogenase CJO35_16955 PF03447 Homoserine dehydrogenase, NAD binding domain CJO35_16960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO35_16960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO35_16970 PF04608 Phosphatidylglycerophosphatase A CJO35_16975 PF13344 Haloacid dehalogenase-like hydrolase CJO35_16980 PF01934 Protein of unknown function DUF86 CJO35_16985 PF06265 Protein of unknown function (DUF1027) CJO35_16990 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CJO35_16995 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CJO35_16995 PF04055 Radical SAM superfamily CJO35_17000 PF01551 Peptidase family M23 CJO35_17010 PF00209 Sodium:neurotransmitter symporter family CJO35_17015 PF09560 Sporulation protein YunB (Spo_YunB) CJO35_17020 PF08827 Domain of unknown function (DUF1805) CJO35_17025 PF02872 5'-nucleotidase, C-terminal domain CJO35_17030 PF01925 Sulfite exporter TauE/SafE CJO35_17035 PF01904 Protein of unknown function DUF72 CJO35_17045 PF13977 BetI-type transcriptional repressor, C-terminal CJO35_17045 PF00440 Bacterial regulatory proteins, tetR family CJO35_17055 PF00266 Aminotransferase class-V CJO35_17060 PF01546 Peptidase family M20/M25/M40 CJO35_17065 PF13556 PucR C-terminal helix-turn-helix domain CJO35_17065 PF07905 Purine catabolism regulatory protein-like family CJO35_17065 PF17853 GGDEF-like domain CJO35_17070 PF07690 Major Facilitator Superfamily CJO35_17075 PF03606 C4-dicarboxylate anaerobic carrier CJO35_17080 PF00591 Glycosyl transferase family, a/b domain CJO35_17080 PF02885 Glycosyl transferase family, helical bundle domain CJO35_17090 PF04231 Endonuclease I CJO35_17100 PF01266 FAD dependent oxidoreductase CJO35_17115 PF18801 response regulator aspartate phosphatase H, N terminal CJO35_17120 PF01458 Uncharacterized protein family (UPF0051) CJO35_17125 PF01592 NifU-like N terminal domain CJO35_17130 PF00266 Aminotransferase class-V CJO35_17135 PF01458 Uncharacterized protein family (UPF0051) CJO35_17140 PF00005 ABC transporter CJO35_17145 PF16916 Dimerisation domain of Zinc Transporter CJO35_17145 PF01545 Cation efflux family CJO35_17150 PF02627 Carboxymuconolactone decarboxylase family CJO35_17155 PF03180 NLPA lipoprotein CJO35_17160 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_17165 PF00005 ABC transporter CJO35_17165 PF09383 NIL domain CJO35_17170 PF02036 SCP-2 sterol transfer family CJO35_17175 PF00085 Thioredoxin CJO35_17180 PF01751 Toprim domain CJO35_17185 PF10830 Protein of unknown function (DUF2553) CJO35_17190 PF01597 Glycine cleavage H-protein CJO35_17195 PF03960 ArsC family CJO35_17200 PF02770 Acyl-CoA dehydrogenase, middle domain CJO35_17200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO35_17200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO35_17205 PF00108 Thiolase, N-terminal domain CJO35_17205 PF02803 Thiolase, C-terminal domain CJO35_17210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO35_17210 PF00378 Enoyl-CoA hydratase/isomerase CJO35_17210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO35_17215 PF14115 YuzL-like protein CJO35_17225 PF07875 Coat F domain CJO35_17230 PF10835 Protein of unknown function (DUF2573) CJO35_17240 PF00005 ABC transporter CJO35_17245 PF01032 FecCD transport family CJO35_17250 PF01032 FecCD transport family CJO35_17255 PF01497 Periplasmic binding protein CJO35_17260 PF14039 YusW-like protein CJO35_17270 PF07943 Penicillin-binding protein 5, C-terminal domain CJO35_17270 PF00768 D-alanyl-D-alanine carboxypeptidase CJO35_17275 PF00106 short chain dehydrogenase CJO35_17280 PF00210 Ferritin-like domain CJO35_17285 PF13180 PDZ domain CJO35_17290 PF00072 Response regulator receiver domain CJO35_17290 PF00486 Transcriptional regulatory protein, C terminal CJO35_17295 PF00512 His Kinase A (phospho-acceptor) domain CJO35_17295 PF00672 HAMP domain CJO35_17295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_17305 PF00440 Bacterial regulatory proteins, tetR family CJO35_17310 PF00206 Lyase CJO35_17310 PF10415 Fumarase C C-terminus CJO35_17315 PF13113 Protein of unknown function (DUF3970) CJO35_17320 PF03323 Bacillus/Clostridium GerA spore germination protein CJO35_17325 PF03845 Spore germination protein CJO35_17330 PF05504 Spore germination B3/ GerAC like, C-terminal CJO35_17340 PF00196 Bacterial regulatory proteins, luxR family CJO35_17340 PF00072 Response regulator receiver domain CJO35_17345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_17345 PF00672 HAMP domain CJO35_17345 PF07730 Histidine kinase CJO35_17350 PF09922 Cell wall-active antibiotics response 4TMS YvqF CJO35_17360 PF04012 PspA/IM30 family CJO35_17370 PF01095 Pectinesterase CJO35_17375 PF01923 Cobalamin adenosyltransferase CJO35_17395 PF00465 Iron-containing alcohol dehydrogenase CJO35_17400 PF00701 Dihydrodipicolinate synthetase family CJO35_17405 PF00005 ABC transporter CJO35_17410 PF01032 FecCD transport family CJO35_17415 PF01497 Periplasmic binding protein CJO35_17420 PF07729 FCD domain CJO35_17420 PF00392 Bacterial regulatory proteins, gntR family CJO35_17425 PF00106 short chain dehydrogenase CJO35_17430 PF03475 3-alpha domain CJO35_17430 PF03473 MOSC domain CJO35_17435 PF03466 LysR substrate binding domain CJO35_17435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_17440 PF00295 Glycosyl hydrolases family 28 CJO35_17445 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJO35_17445 PF08666 SAF domain CJO35_17450 PF01232 Mannitol dehydrogenase Rossmann domain CJO35_17450 PF08125 Mannitol dehydrogenase C-terminal domain CJO35_17455 PF00356 Bacterial regulatory proteins, lacI family CJO35_17465 PF02614 Glucuronate isomerase CJO35_17470 PF00512 His Kinase A (phospho-acceptor) domain CJO35_17470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_17475 PF00486 Transcriptional regulatory protein, C terminal CJO35_17475 PF00072 Response regulator receiver domain CJO35_17480 PF00005 ABC transporter CJO35_17485 PF01032 FecCD transport family CJO35_17490 PF01032 FecCD transport family CJO35_17495 PF13520 Amino acid permease CJO35_17500 PF09575 Small spore protein J (Spore_SspJ) CJO35_17505 PF04307 LexA-binding, inner membrane-associated putative hydrolase CJO35_17510 PF00884 Sulfatase CJO35_17515 PF07690 Major Facilitator Superfamily CJO35_17520 PF00248 Aldo/keto reductase family CJO35_17525 PF00480 ROK family CJO35_17530 PF00266 Aminotransferase class-V CJO35_17540 PF13538 UvrD-like helicase C-terminal domain CJO35_17545 PF03458 UPF0126 domain CJO35_17550 PF04229 GrpB protein CJO35_17550 PF13673 Acetyltransferase (GNAT) domain CJO35_17555 PF00583 Acetyltransferase (GNAT) family CJO35_17555 PF13673 Acetyltransferase (GNAT) domain CJO35_17560 PF02600 Disulfide bond formation protein DsbB CJO35_17565 PF13462 Thioredoxin CJO35_17570 PF00403 Heavy-metal-associated domain CJO35_17580 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_17585 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_17590 PF01055 Glycosyl hydrolases family 31 CJO35_17590 PF13802 Galactose mutarotase-like CJO35_17595 PF14310 Fibronectin type III-like domain CJO35_17595 PF07691 PA14 domain CJO35_17595 PF00933 Glycosyl hydrolase family 3 N terminal domain CJO35_17595 PF01915 Glycosyl hydrolase family 3 C-terminal domain CJO35_17600 PF00005 ABC transporter CJO35_17605 PF00950 ABC 3 transport family CJO35_17610 PF01297 Zinc-uptake complex component A periplasmic CJO35_17620 PF01418 Helix-turn-helix domain, rpiR family CJO35_17620 PF01380 SIS domain CJO35_17630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_17630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_17640 PF01116 Fructose-bisphosphate aldolase class-II CJO35_17645 PF00403 Heavy-metal-associated domain CJO35_17650 PF00403 Heavy-metal-associated domain CJO35_17655 PF02583 Metal-sensitive transcriptional repressor CJO35_17660 PF01965 DJ-1/PfpI family CJO35_17665 PF08220 DeoR-like helix-turn-helix domain CJO35_17665 PF00455 DeoR C terminal sensor domain CJO35_17670 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO35_17670 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO35_17675 PF01261 Xylose isomerase-like TIM barrel CJO35_17685 PF00596 Class II Aldolase and Adducin N-terminal domain CJO35_17695 PF07690 Major Facilitator Superfamily CJO35_17700 PF16715 Cyclodipeptide synthase CJO35_17705 PF00067 Cytochrome P450 CJO35_17715 PF01047 MarR family CJO35_17720 PF01425 Amidase CJO35_17725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO35_17725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO35_17730 PF02525 Flavodoxin-like fold CJO35_17745 PF04545 Sigma-70, region 4 CJO35_17750 PF12841 YvrJ protein family CJO35_17755 PF00190 Cupin CJO35_17760 PF14184 Regulatory protein YrvL CJO35_17790 PF01726 LexA DNA binding domain CJO35_17790 PF00717 Peptidase S24-like CJO35_17845 PF01471 Putative peptidoglycan binding domain CJO35_17845 PF01510 N-acetylmuramoyl-L-alanine amidase CJO35_17850 PF04688 SPP1 phage holin CJO35_17855 PF10779 Haemolysin XhlA CJO35_17880 PF13457 GW (Gly-Tryp) dipeptide domain CJO35_17880 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJO35_17890 PF01464 Transglycosylase SLT domain CJO35_17935 PF00574 Clp protease CJO35_17950 PF03354 Phage Terminase CJO35_17985 PF11122 Inner spore coat protein D CJO35_18105 PF01668 SmpB protein CJO35_18110 PF00773 RNB domain CJO35_18110 PF17876 Cold shock domain CJO35_18110 PF00575 S1 RNA binding domain CJO35_18110 PF08206 Ribonuclease B OB domain CJO35_18115 PF12146 Serine aminopeptidase, S33 CJO35_18120 PF03840 Preprotein translocase SecG subunit CJO35_18125 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJO35_18125 PF18277 AbrB C-terminal domain CJO35_18130 PF01381 Helix-turn-helix CJO35_18145 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_18150 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CJO35_18155 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_18160 PF00005 ABC transporter CJO35_18160 PF00571 CBS domain CJO35_18165 PF12802 MarR family CJO35_18170 PF01914 MarC family integral membrane protein CJO35_18185 PF01497 Periplasmic binding protein CJO35_18195 PF01965 DJ-1/PfpI family CJO35_18200 PF03952 Enolase, N-terminal domain CJO35_18200 PF00113 Enolase, C-terminal TIM barrel domain CJO35_18205 PF01676 Metalloenzyme superfamily CJO35_18205 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CJO35_18210 PF00121 Triosephosphate isomerase CJO35_18215 PF00162 Phosphoglycerate kinase CJO35_18220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJO35_18220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJO35_18225 PF04198 Putative sugar-binding domain CJO35_18230 PF00296 Luciferase-like monooxygenase CJO35_18235 PF00324 Amino acid permease CJO35_18245 PF00005 ABC transporter CJO35_18255 PF02589 LUD domain CJO35_18260 PF13183 4Fe-4S dicluster domain CJO35_18260 PF02589 LUD domain CJO35_18260 PF11870 Domain of unknown function (DUF3390) CJO35_18265 PF02754 Cysteine-rich domain CJO35_18270 PF00392 Bacterial regulatory proteins, gntR family CJO35_18270 PF07729 FCD domain CJO35_18275 PF02652 L-lactate permease CJO35_18280 PF04963 Sigma-54 factor, core binding domain CJO35_18280 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJO35_18280 PF04552 Sigma-54, DNA binding domain CJO35_18285 PF09628 YvfG protein CJO35_18290 PF04230 Polysaccharide pyruvyl transferase CJO35_18295 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO35_18300 PF17836 PglD N-terminal domain CJO35_18300 PF00132 Bacterial transferase hexapeptide (six repeats) CJO35_18305 PF02397 Bacterial sugar transferase CJO35_18310 PF14667 Polysaccharide biosynthesis C-terminal domain CJO35_18310 PF01943 Polysaccharide biosynthesis protein CJO35_18315 PF00535 Glycosyl transferase family 2 CJO35_18320 PF04230 Polysaccharide pyruvyl transferase CJO35_18325 PF00535 Glycosyl transferase family 2 CJO35_18335 PF13439 Glycosyltransferase Family 4 CJO35_18335 PF00534 Glycosyl transferases group 1 CJO35_18340 PF00535 Glycosyl transferase family 2 CJO35_18345 PF00534 Glycosyl transferases group 1 CJO35_18345 PF13439 Glycosyltransferase Family 4 CJO35_18350 PF02719 Polysaccharide biosynthesis protein CJO35_18355 PF13614 AAA domain CJO35_18360 PF02706 Chain length determinant protein CJO35_18365 PF01381 Helix-turn-helix CJO35_18365 PF08671 Anti-repressor SinI CJO35_18370 PF02525 Flavodoxin-like fold CJO35_18375 PF07690 Major Facilitator Superfamily CJO35_18380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO35_18380 PF01842 ACT domain CJO35_18380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO35_18385 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJO35_18390 PF07005 Sugar-binding N-terminal domain CJO35_18390 PF17042 Nucleotide-binding C-terminal domain CJO35_18395 PF00465 Iron-containing alcohol dehydrogenase CJO35_18400 PF00701 Dihydrodipicolinate synthetase family CJO35_18405 PF13426 PAS domain CJO35_18405 PF02954 Bacterial regulatory protein, Fis family CJO35_18405 PF00158 Sigma-54 interaction domain CJO35_18415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO35_18420 PF02435 Levansucrase/Invertase CJO35_18425 PF08244 Glycosyl hydrolases family 32 C terminal CJO35_18425 PF00251 Glycosyl hydrolases family 32 N-terminal domain CJO35_18440 PF00574 Clp protease CJO35_18445 PF03641 Possible lysine decarboxylase CJO35_18450 PF03819 MazG nucleotide pyrophosphohydrolase domain CJO35_18455 PF01966 HD domain CJO35_18460 PF01740 STAS domain CJO35_18460 PF00916 Sulfate permease family CJO35_18465 PF00484 Carbonic anhydrase CJO35_18470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO35_18470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO35_18475 PF01613 Flavin reductase like domain CJO35_18485 PF00545 ribonuclease CJO35_18490 PF01337 Barstar (barnase inhibitor) CJO35_18495 PF00797 N-acetyltransferase CJO35_18500 PF00381 PTS HPr component phosphorylation site CJO35_18505 PF10298 WhiA N-terminal LAGLIDADG-like domain CJO35_18505 PF14527 WhiA LAGLIDADG-like domain CJO35_18505 PF02650 WhiA C-terminal HTH domain CJO35_18510 PF01933 Uncharacterised protein family UPF0052 CJO35_18515 PF03668 P-loop ATPase protein family CJO35_18520 PF00293 NUDIX domain CJO35_18530 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_18545 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJO35_18545 PF01502 Phosphoribosyl-AMP cyclohydrolase CJO35_18550 PF00977 Histidine biosynthesis protein CJO35_18555 PF00977 Histidine biosynthesis protein CJO35_18560 PF00117 Glutamine amidotransferase class-I CJO35_18565 PF00475 Imidazoleglycerol-phosphate dehydratase CJO35_18570 PF00815 Histidinol dehydrogenase CJO35_18575 PF01634 ATP phosphoribosyltransferase CJO35_18580 PF13393 Histidyl-tRNA synthetase CJO35_18585 PF13529 Peptidase_C39 like family CJO35_18590 PF03211 Pectate lyase CJO35_18595 PF14602 Hexapeptide repeat of succinyl-transferase CJO35_18600 PF13419 Haloacid dehalogenase-like hydrolase CJO35_18605 PF07670 Nucleoside recognition CJO35_18610 PF01790 Prolipoprotein diacylglyceryl transferase CJO35_18615 PF07475 HPr Serine kinase C-terminal domain CJO35_18615 PF02603 HPr Serine kinase N terminus CJO35_18620 PF01047 MarR family CJO35_18625 PF07690 Major Facilitator Superfamily CJO35_18630 PF00149 Calcineurin-like phosphoesterase CJO35_18635 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CJO35_18640 PF04024 PspC domain CJO35_18645 PF13349 Putative adhesin CJO35_18660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_18670 PF17760 UvrA interaction domain CJO35_18670 PF17755 UvrA DNA-binding domain CJO35_18670 PF00005 ABC transporter CJO35_18675 PF17757 UvrB interaction domain CJO35_18675 PF00271 Helicase conserved C-terminal domain CJO35_18675 PF04851 Type III restriction enzyme, res subunit CJO35_18675 PF02151 UvrB/uvrC motif CJO35_18675 PF12344 Ultra-violet resistance protein B CJO35_18680 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) CJO35_18690 PF17820 PDZ domain CJO35_18695 PF17423 Swarming motility protein CJO35_18700 PF01471 Putative peptidoglycan binding domain CJO35_18700 PF03572 Peptidase family S41 CJO35_18700 PF17820 PDZ domain CJO35_18705 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO35_18710 PF00877 NlpC/P60 family CJO35_18715 PF18075 FtsX extracellular domain CJO35_18715 PF02687 FtsX-like permease family CJO35_18720 PF00005 ABC transporter CJO35_18730 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO35_18735 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CJO35_18735 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CJO35_18745 PF07517 SecA DEAD-like domain CJO35_18745 PF01043 SecA preprotein cross-linking domain CJO35_18745 PF07516 SecA Wing and Scaffold domain CJO35_18745 PF02810 SEC-C motif CJO35_18750 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CJO35_18750 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CJO35_18765 PF02561 Flagellar protein FliS CJO35_18770 PF02465 Flagellar hook-associated protein 2 N-terminus CJO35_18770 PF07195 Flagellar hook-associated protein 2 C-terminus CJO35_18770 PF07196 Flagellin hook IN motif CJO35_18775 PF03646 FlaG protein CJO35_18785 PF00669 Bacterial flagellin N-terminal helical region CJO35_18785 PF00700 Bacterial flagellin C-terminal helical region CJO35_18790 PF02599 Global regulator protein family CJO35_18795 PF02623 FliW protein CJO35_18805 PF00700 Bacterial flagellin C-terminal helical region CJO35_18805 PF00669 Bacterial flagellin N-terminal helical region CJO35_18810 PF00460 Flagella basal body rod protein CJO35_18810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO35_18815 PF05130 FlgN protein CJO35_18820 PF04316 Anti-sigma-28 factor, FlgM CJO35_18835 PF10719 Late competence development protein ComFB CJO35_18840 PF00271 Helicase conserved C-terminal domain CJO35_18840 PF04851 Type III restriction enzyme, res subunit CJO35_18845 PF02645 Uncharacterised protein, DegV family COG1307 CJO35_18850 PF00196 Bacterial regulatory proteins, luxR family CJO35_18850 PF00072 Response regulator receiver domain CJO35_18855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_18855 PF07730 Histidine kinase CJO35_18855 PF05384 Sensor protein DegS CJO35_18860 PF09186 Domain of unknown function (DUF1949) CJO35_18860 PF01205 Uncharacterized protein family UPF0029 CJO35_18865 PF03816 Cell envelope-related transcriptional attenuator domain CJO35_18875 PF00953 Glycosyl transferase family 4 CJO35_18885 PF00535 Glycosyl transferase family 2 CJO35_18890 PF02706 Chain length determinant protein CJO35_18895 PF04932 O-Antigen ligase CJO35_18900 PF16363 GDP-mannose 4,6 dehydratase CJO35_18905 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJO35_18905 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJO35_18905 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJO35_18910 PF13439 Glycosyltransferase Family 4 CJO35_18910 PF00534 Glycosyl transferases group 1 CJO35_18915 PF14667 Polysaccharide biosynthesis C-terminal domain CJO35_18915 PF01943 Polysaccharide biosynthesis protein CJO35_18920 PF02397 Bacterial sugar transferase CJO35_18925 PF04122 Putative cell wall binding repeat 2 CJO35_18925 PF01520 N-acetylmuramoyl-L-alanine amidase CJO35_18930 PF08486 Stage II sporulation protein CJO35_18930 PF04122 Putative cell wall binding repeat 2 CJO35_18940 PF03816 Cell envelope-related transcriptional attenuator domain CJO35_18945 PF02350 UDP-N-acetylglucosamine 2-epimerase CJO35_18950 PF00483 Nucleotidyl transferase CJO35_18955 PF00005 ABC transporter CJO35_18960 PF01061 ABC-2 type transporter CJO35_18965 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJO35_18965 PF00535 Glycosyl transferase family 2 CJO35_18970 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJO35_18975 PF01467 Cytidylyltransferase-like CJO35_18980 PF03808 Glycosyl transferase WecB/TagA/CpsF family CJO35_18985 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CJO35_18995 PF01238 Phosphomannose isomerase type I CJO35_19000 PF04055 Radical SAM superfamily CJO35_19005 PF03477 ATP cone domain CJO35_19005 PF13597 Anaerobic ribonucleoside-triphosphate reductase CJO35_19010 PF03812 2-keto-3-deoxygluconate permease CJO35_19015 PF01081 KDPG and KHG aldolase CJO35_19020 PF00294 pfkB family carbohydrate kinase CJO35_19025 PF00356 Bacterial regulatory proteins, lacI family CJO35_19030 PF04962 KduI/IolB family CJO35_19040 PF00107 Zinc-binding dehydrogenase CJO35_19040 PF13823 Alcohol dehydrogenase GroES-associated CJO35_19040 PF08240 Alcohol dehydrogenase GroES-like domain CJO35_19045 PF00083 Sugar (and other) transporter CJO35_19050 PF03816 Cell envelope-related transcriptional attenuator domain CJO35_19060 PF00877 NlpC/P60 family CJO35_19070 PF09587 Bacterial capsule synthesis protein PGA_cap CJO35_19075 PF14102 Capsule biosynthesis CapC CJO35_19080 PF08245 Mur ligase middle domain CJO35_19085 PF00356 Bacterial regulatory proteins, lacI family CJO35_19090 PF00294 pfkB family carbohydrate kinase CJO35_19095 PF05025 RbsD / FucU transport protein family CJO35_19100 PF00005 ABC transporter CJO35_19105 PF02653 Branched-chain amino acid transport system / permease component CJO35_19110 PF13407 Periplasmic binding protein domain CJO35_19120 PF03306 Alpha-acetolactate decarboxylase CJO35_19125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO35_19125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO35_19125 PF00205 Thiamine pyrophosphate enzyme, central domain CJO35_19130 PF03466 LysR substrate binding domain CJO35_19130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_19140 PF01037 Lrp/AsnC ligand binding domain CJO35_19140 PF13404 AsnC-type helix-turn-helix domain CJO35_19145 PF02417 Chromate transporter CJO35_19150 PF02417 Chromate transporter CJO35_19160 PF02706 Chain length determinant protein CJO35_19160 PF13807 G-rich domain on putative tyrosine kinase CJO35_19170 PF04434 SWIM zinc finger CJO35_19175 PF12419 SNF2 Helicase protein CJO35_19175 PF00176 SNF2 family N-terminal domain CJO35_19175 PF00271 Helicase conserved C-terminal domain CJO35_19185 PF08220 DeoR-like helix-turn-helix domain CJO35_19185 PF00455 DeoR C terminal sensor domain CJO35_19190 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJO35_19195 PF00106 short chain dehydrogenase CJO35_19200 PF03829 PTS system glucitol/sorbitol-specific IIA component CJO35_19205 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CJO35_19205 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CJO35_19210 PF03608 PTS system enzyme II sorbitol-specific factor CJO35_19220 PF04198 Putative sugar-binding domain CJO35_19220 PF13936 Helix-turn-helix domain CJO35_19225 PF00436 Single-strand binding protein family CJO35_19235 PF14183 YwpF-like protein CJO35_19240 PF01741 Large-conductance mechanosensitive channel, MscL CJO35_19245 PF07977 FabA-like domain CJO35_19250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO35_19250 PF00460 Flagella basal body rod protein CJO35_19255 PF00460 Flagella basal body rod protein CJO35_19255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO35_19265 PF12116 Stage III sporulation protein D CJO35_19275 PF01047 MarR family CJO35_19280 PF07690 Major Facilitator Superfamily CJO35_19285 PF01569 PAP2 superfamily CJO35_19290 PF01368 DHH family CJO35_19290 PF02833 DHHA2 domain CJO35_19295 PF05067 Manganese containing catalase CJO35_19300 PF09844 Uncharacterized conserved protein (COG2071) CJO35_19305 PF00571 CBS domain CJO35_19310 PF01544 CorA-like Mg2+ transporter protein CJO35_19315 PF01595 Cyclin M transmembrane N-terminal domain CJO35_19315 PF03471 Transporter associated domain CJO35_19315 PF00571 CBS domain CJO35_19320 PF00909 Ammonium Transporter Family CJO35_19325 PF00543 Nitrogen regulatory protein P-II CJO35_19330 PF00574 Clp protease CJO35_19335 PF08281 Sigma-70, region 4 CJO35_19335 PF12680 SnoaL-like domain CJO35_19335 PF04542 Sigma-70 region 2 CJO35_19340 PF01551 Peptidase family M23 CJO35_19345 PF00583 Acetyltransferase (GNAT) family CJO35_19350 PF17370 Family of unknown function (DUF5392) CJO35_19355 PF13091 PLD-like domain CJO35_19355 PF13396 Phospholipase_D-nuclease N-terminal CJO35_19365 PF07690 Major Facilitator Superfamily CJO35_19375 PF13193 AMP-binding enzyme C-terminal domain CJO35_19375 PF00668 Condensation domain CJO35_19375 PF00550 Phosphopantetheine attachment site CJO35_19375 PF00975 Thioesterase domain CJO35_19375 PF00501 AMP-binding enzyme CJO35_19380 PF00550 Phosphopantetheine attachment site CJO35_19380 PF00857 Isochorismatase family CJO35_19385 PF00501 AMP-binding enzyme CJO35_19385 PF13193 AMP-binding enzyme C-terminal domain CJO35_19390 PF00425 chorismate binding enzyme CJO35_19395 PF00106 short chain dehydrogenase CJO35_19400 PF00756 Putative esterase CJO35_19405 PF01032 FecCD transport family CJO35_19410 PF01032 FecCD transport family CJO35_19415 PF01497 Periplasmic binding protein CJO35_19420 PF01497 Periplasmic binding protein CJO35_19420 PF12833 Helix-turn-helix domain CJO35_19425 PF17319 Family of unknown function (DUF5362) CJO35_19430 PF13460 NAD(P)H-binding CJO35_19435 PF02082 Transcriptional regulator CJO35_19445 PF06463 Molybdenum Cofactor Synthesis C CJO35_19445 PF04055 Radical SAM superfamily CJO35_19450 PF02634 FdhD/NarQ family CJO35_19455 PF07690 Major Facilitator Superfamily CJO35_19460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO35_19460 PF00384 Molybdopterin oxidoreductase CJO35_19460 PF01568 Molydopterin dinucleotide binding domain CJO35_19460 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJO35_19465 PF00092 von Willebrand factor type A domain CJO35_19470 PF00092 von Willebrand factor type A domain CJO35_19475 PF08486 Stage II sporulation protein CJO35_19480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJO35_19485 PF08680 TATA-box binding CJO35_19490 PF06612 Protein of unknown function (DUF1146) CJO35_19495 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJO35_19495 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CJO35_19500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO35_19500 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO35_19505 PF00231 ATP synthase CJO35_19510 PF00306 ATP synthase alpha/beta chain, C terminal domain CJO35_19510 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO35_19510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO35_19515 PF00213 ATP synthase delta (OSCP) subunit CJO35_19520 PF00430 ATP synthase B/B' CF(0) CJO35_19525 PF00137 ATP synthase subunit C CJO35_19530 PF00119 ATP synthase A chain CJO35_19535 PF03899 ATP synthase I chain CJO35_19550 PF00464 Serine hydroxymethyltransferase CJO35_19555 PF04260 Protein of unknown function (DUF436) CJO35_19560 PF02502 Ribose/Galactose Isomerase CJO35_19565 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJO35_19570 PF02659 Putative manganese efflux pump CJO35_19575 PF03481 Putative GTP-binding controlling metal-binding CJO35_19575 PF01300 Telomere recombination CJO35_19585 PF09551 Stage II sporulation protein R (spore_II_R) CJO35_19590 PF07690 Major Facilitator Superfamily CJO35_19595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO35_19595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO35_19600 PF05116 Sucrose-6F-phosphate phosphohydrolase CJO35_19605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO35_19610 PF00356 Bacterial regulatory proteins, lacI family CJO35_19615 PF17827 PrmC N-terminal domain CJO35_19615 PF05175 Methyltransferase small domain CJO35_19620 PF00472 RF-1 domain CJO35_19620 PF03462 PCRF domain CJO35_19625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_19630 PF13411 MerR HTH family regulatory protein CJO35_19635 PF03547 Membrane transport protein CJO35_19640 PF00390 Malic enzyme, N-terminal domain CJO35_19640 PF03949 Malic enzyme, NAD binding domain CJO35_19645 PF00265 Thymidine kinase CJO35_19650 PF01197 Ribosomal protein L31 CJO35_19655 PF07497 Rho termination factor, RNA-binding domain CJO35_19655 PF07498 Rho termination factor, N-terminal domain CJO35_19655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO35_19660 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CJO35_19665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJO35_19670 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJO35_19675 PF01116 Fructose-bisphosphate aldolase class-II CJO35_19680 PF00072 Response regulator receiver domain CJO35_19685 PF10740 Domain of unknown function (DUF2529) CJO35_19690 PF00117 Glutamine amidotransferase class-I CJO35_19690 PF06418 CTP synthase N-terminus CJO35_19695 PF05066 HB1, ASXL, restriction endonuclease HTH domain CJO35_19700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO35_19700 PF02770 Acyl-CoA dehydrogenase, middle domain CJO35_19700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO35_19705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO35_19705 PF02770 Acyl-CoA dehydrogenase, middle domain CJO35_19705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO35_19710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO35_19710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO35_19715 PF00108 Thiolase, N-terminal domain CJO35_19715 PF02803 Thiolase, C-terminal domain CJO35_19720 PF13183 4Fe-4S dicluster domain CJO35_19720 PF02754 Cysteine-rich domain CJO35_19725 PF13091 PLD-like domain CJO35_19735 PF03485 Arginyl tRNA synthetase N terminal domain CJO35_19735 PF00750 tRNA synthetases class I (R) CJO35_19735 PF05746 DALR anticodon binding domain CJO35_19740 PF09148 Domain of unknown function (DUF1934) CJO35_19745 PF00491 Arginase family CJO35_19750 PF17284 Spermidine synthase tetramerisation domain CJO35_19765 PF00912 Transglycosylase CJO35_19765 PF00905 Penicillin binding protein transpeptidase domain CJO35_19770 PF08741 YwhD family CJO35_19775 PF02163 Peptidase family M50 CJO35_19780 PF01361 Tautomerase enzyme CJO35_19795 PF01966 HD domain CJO35_19800 PF07293 Protein of unknown function (DUF1450) CJO35_19810 PF14154 Domain of unknown function (DUF4306) CJO35_19815 PF03099 Biotin/lipoate A/B protein ligase family CJO35_19820 PF01494 FAD binding domain CJO35_19825 PF07690 Major Facilitator Superfamily CJO35_19835 PF01361 Tautomerase enzyme CJO35_19845 PF00171 Aldehyde dehydrogenase family CJO35_19850 PF09339 IclR helix-turn-helix domain CJO35_19850 PF01614 Bacterial transcriptional regulator CJO35_19860 PF01515 Phosphate acetyl/butaryl transferase CJO35_19870 PF17735 Biofilm surface layer A CJO35_19880 PF02386 Cation transport protein CJO35_19885 PF09671 Spore coat protein (Spore_GerQ) CJO35_19900 PF00005 ABC transporter CJO35_19910 PF00072 Response regulator receiver domain CJO35_19910 PF00196 Bacterial regulatory proteins, luxR family CJO35_19915 PF04241 Protein of unknown function (DUF423) CJO35_19920 PF00860 Permease family CJO35_19925 PF17261 Family of unknown function (DUF5327) CJO35_19930 PF00171 Aldehyde dehydrogenase family CJO35_19935 PF03167 Uracil DNA glycosylase superfamily CJO35_19940 PF00535 Glycosyl transferase family 2 CJO35_19945 PF08543 Phosphomethylpyrimidine kinase CJO35_19955 PF08244 Glycosyl hydrolases family 32 C terminal CJO35_19955 PF00251 Glycosyl hydrolases family 32 N-terminal domain CJO35_19960 PF02378 Phosphotransferase system, EIIC CJO35_19960 PF00367 phosphotransferase system, EIIB CJO35_19965 PF00874 PRD domain CJO35_19965 PF03123 CAT RNA binding domain CJO35_19975 PF00082 Subtilase family CJO35_19975 PF05922 Peptidase inhibitor I9 CJO35_19975 PF02225 PA domain CJO35_19975 PF13860 FlgD Ig-like domain CJO35_19985 PF00296 Luciferase-like monooxygenase CJO35_19990 PF00881 Nitroreductase family CJO35_19995 PF07687 Peptidase dimerisation domain CJO35_19995 PF01546 Peptidase family M20/M25/M40 CJO35_20000 PF01098 Cell cycle protein CJO35_20005 PF01098 Cell cycle protein CJO35_20020 PF17368 Spore morphogenesis and germination YwcE CJO35_20030 PF00583 Acetyltransferase (GNAT) family CJO35_20035 PF00005 ABC transporter CJO35_20040 PF00005 ABC transporter CJO35_20060 PF00072 Response regulator receiver domain CJO35_20060 PF00196 Bacterial regulatory proteins, luxR family CJO35_20065 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CJO35_20070 PF00510 Cytochrome c oxidase subunit III CJO35_20075 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO35_20080 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO35_20080 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CJO35_20085 PF16363 GDP-mannose 4,6 dehydratase CJO35_20105 PF04341 Protein of unknown function, DUF485 CJO35_20110 PF00474 Sodium:solute symporter family CJO35_20115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO35_20115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO35_20120 PF01261 Xylose isomerase-like TIM barrel CJO35_20125 PF00480 ROK family CJO35_20130 PF02581 Thiamine monophosphate synthase CJO35_20135 PF02110 Hydroxyethylthiazole kinase family CJO35_20140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO35_20140 PF03466 LysR substrate binding domain CJO35_20155 PF03788 LrgA family CJO35_20160 PF04172 LrgB-like family CJO35_20170 PF00474 Sodium:solute symporter family CJO35_20175 PF17785 PUA-like domain CJO35_20175 PF10672 S-adenosylmethionine-dependent methyltransferase CJO35_20180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO35_20185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO35_20185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO35_20190 PF01501 Glycosyl transferase family 8 CJO35_20205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_20205 PF07730 Histidine kinase CJO35_20210 PF00072 Response regulator receiver domain CJO35_20210 PF00196 Bacterial regulatory proteins, luxR family CJO35_20215 PF03176 MMPL family CJO35_20220 PF09529 Integral membrane protein (intg_mem_TP0381) CJO35_20225 PF07690 Major Facilitator Superfamily CJO35_20230 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO35_20230 PF13378 Enolase C-terminal domain-like CJO35_20235 PF01081 KDPG and KHG aldolase CJO35_20240 PF00294 pfkB family carbohydrate kinase CJO35_20245 PF09339 IclR helix-turn-helix domain CJO35_20245 PF01614 Bacterial transcriptional regulator CJO35_20250 PF04389 Peptidase family M28 CJO35_20250 PF02225 PA domain CJO35_20255 PF07690 Major Facilitator Superfamily CJO35_20265 PF04607 Region found in RelA / SpoT proteins CJO35_20275 PF12459 D-Ala-teichoic acid biosynthesis protein CJO35_20280 PF00501 AMP-binding enzyme CJO35_20280 PF13193 AMP-binding enzyme C-terminal domain CJO35_20285 PF03062 MBOAT, membrane-bound O-acyltransferase family CJO35_20290 PF00550 Phosphopantetheine attachment site CJO35_20295 PF04914 DltD protein CJO35_20300 PF01063 Amino-transferase class IV CJO35_20305 PF07690 Major Facilitator Superfamily CJO35_20310 PF02056 Family 4 glycosyl hydrolase CJO35_20310 PF11975 Family 4 glycosyl hydrolase C-terminal domain CJO35_20315 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CJO35_20320 PF02378 Phosphotransferase system, EIIC CJO35_20325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO35_20330 PF05043 Mga helix-turn-helix domain CJO35_20330 PF00874 PRD domain CJO35_20330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO35_20330 PF08279 HTH domain CJO35_20335 PF02245 Methylpurine-DNA glycosylase (MPG) CJO35_20340 PF00392 Bacterial regulatory proteins, gntR family CJO35_20340 PF07729 FCD domain CJO35_20345 PF00285 Citrate synthase, C-terminal domain CJO35_20350 PF03972 MmgE/PrpD family CJO35_20370 PF00664 ABC transporter transmembrane region CJO35_20370 PF00005 ABC transporter CJO35_20375 PF13472 GDSL-like Lipase/Acylhydrolase family CJO35_20380 PF17735 Biofilm surface layer A CJO35_20385 PF17735 Biofilm surface layer A CJO35_20390 PF07690 Major Facilitator Superfamily CJO35_20395 PF12679 ABC-2 family transporter protein CJO35_20400 PF13732 Domain of unknown function (DUF4162) CJO35_20400 PF00005 ABC transporter CJO35_20405 PF13396 Phospholipase_D-nuclease N-terminal CJO35_20420 PF08281 Sigma-70, region 4 CJO35_20420 PF04542 Sigma-70 region 2 CJO35_20425 PF07690 Major Facilitator Superfamily CJO35_20430 PF06628 Catalase-related immune-responsive CJO35_20430 PF00199 Catalase CJO35_20435 PF06628 Catalase-related immune-responsive CJO35_20435 PF00199 Catalase CJO35_20440 PF01475 Ferric uptake regulator family CJO35_20450 PF12679 ABC-2 family transporter protein CJO35_20455 PF00005 ABC transporter CJO35_20470 PF00005 ABC transporter CJO35_20490 PF00082 Subtilase family CJO35_20495 PF03412 Peptidase C39 family CJO35_20495 PF00005 ABC transporter CJO35_20495 PF00664 ABC transporter transmembrane region CJO35_20505 PF16934 Two-component Enterococcus faecalis cytolysin (EFC) CJO35_20510 PF14867 Lantibiotic alpha CJO35_20520 PF00544 Pectate lyase CJO35_20525 PF01256 Carbohydrate kinase CJO35_20530 PF00005 ABC transporter CJO35_20530 PF00664 ABC transporter transmembrane region CJO35_20535 PF00664 ABC transporter transmembrane region CJO35_20535 PF00005 ABC transporter CJO35_20540 PF02322 Cytochrome bd terminal oxidase subunit II CJO35_20545 PF01654 Cytochrome bd terminal oxidase subunit I CJO35_20555 PF01226 Formate/nitrite transporter CJO35_20565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO35_20565 PF00390 Malic enzyme, N-terminal domain CJO35_20565 PF03949 Malic enzyme, NAD binding domain CJO35_20570 PF03553 Na+/H+ antiporter family CJO35_20575 PF10415 Fumarase C C-terminus CJO35_20575 PF00206 Lyase CJO35_20580 PF17763 Glutaminase/Asparaginase C-terminal domain CJO35_20580 PF00710 Asparaginase, N-terminal CJO35_20585 PF01381 Helix-turn-helix CJO35_20590 PF10282 Lactonase, 7-bladed beta-propeller CJO35_20595 PF00072 Response regulator receiver domain CJO35_20595 PF00486 Transcriptional regulatory protein, C terminal CJO35_20600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_20610 PF00005 ABC transporter CJO35_20615 PF02687 FtsX-like permease family CJO35_20620 PF06486 Protein of unknown function (DUF1093) CJO35_20630 PF01522 Polysaccharide deacetylase CJO35_20635 PF00392 Bacterial regulatory proteins, gntR family CJO35_20635 PF00155 Aminotransferase class I and II CJO35_20640 PF03552 Cellulose synthase CJO35_20640 PF00535 Glycosyl transferase family 2 CJO35_20640 PF07238 PilZ domain CJO35_20645 PF03390 2-hydroxycarboxylate transporter family CJO35_20650 PF03009 Glycerophosphoryl diester phosphodiesterase family CJO35_20655 PF05901 Excalibur calcium-binding domain CJO35_20665 PF00884 Sulfatase CJO35_20670 PF17353 Family of unknown function (DUF5381) CJO35_20675 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CJO35_20675 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CJO35_20680 PF02863 Arginine repressor, C-terminal domain CJO35_20680 PF01316 Arginine repressor, DNA binding domain CJO35_20695 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJO35_20695 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJO35_20700 PF13520 Amino acid permease CJO35_20705 PF00696 Amino acid kinase family CJO35_20720 PF02378 Phosphotransferase system, EIIC CJO35_20730 PF08281 Sigma-70, region 4 CJO35_20730 PF04542 Sigma-70 region 2 CJO35_20740 PF07687 Peptidase dimerisation domain CJO35_20740 PF01546 Peptidase family M20/M25/M40 CJO35_20750 PF08244 Glycosyl hydrolases family 32 C terminal CJO35_20750 PF00251 Glycosyl hydrolases family 32 N-terminal domain CJO35_20755 PF01306 LacY proton/sugar symporter CJO35_20765 PF00356 Bacterial regulatory proteins, lacI family CJO35_20780 PF01717 Cobalamin-independent synthase, Catalytic domain CJO35_20785 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CJO35_20790 PF00535 Glycosyl transferase family 2 CJO35_20795 PF01370 NAD dependent epimerase/dehydratase family CJO35_20820 PF07662 Na+ dependent nucleoside transporter C-terminus CJO35_20820 PF01773 Na+ dependent nucleoside transporter N-terminus CJO35_20825 PF00199 Catalase CJO35_20825 PF06628 Catalase-related immune-responsive CJO35_20825 PF18011 C-terminal domain found in long catalases CJO35_20835 PF00232 Glycosyl hydrolase family 1 CJO35_20840 PF00367 phosphotransferase system, EIIB CJO35_20840 PF02378 Phosphotransferase system, EIIC CJO35_20840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJO35_20850 PF02361 Cobalt transport protein CJO35_20855 PF00005 ABC transporter CJO35_20860 PF09819 ABC-type cobalt transport system, permease component CJO35_20865 PF03070 TENA/THI-4/PQQC family CJO35_20870 PF00463 Isocitrate lyase family CJO35_20875 PF01274 Malate synthase CJO35_20885 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CJO35_20890 PF02687 FtsX-like permease family CJO35_20895 PF00005 ABC transporter CJO35_20900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_20905 PF00486 Transcriptional regulatory protein, C terminal CJO35_20905 PF00072 Response regulator receiver domain CJO35_20910 PF00232 Glycosyl hydrolase family 1 CJO35_20915 PF02378 Phosphotransferase system, EIIC CJO35_20915 PF00367 phosphotransferase system, EIIB CJO35_20915 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CJO35_20925 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CJO35_20940 PF04616 Glycosyl hydrolases family 43 CJO35_20940 PF16369 C-terminal lipocalin-like domain CJO35_20945 PF03880 DbpA RNA binding domain CJO35_20945 PF00270 DEAD/DEAH box helicase CJO35_20945 PF00271 Helicase conserved C-terminal domain CJO35_20975 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CJO35_20975 PF00591 Glycosyl transferase family, a/b domain CJO35_20975 PF02885 Glycosyl transferase family, helical bundle domain CJO35_20980 PF01773 Na+ dependent nucleoside transporter N-terminus CJO35_20980 PF07662 Na+ dependent nucleoside transporter C-terminus CJO35_20985 PF01791 DeoC/LacD family aldolase CJO35_20990 PF04198 Putative sugar-binding domain CJO35_21005 PF00990 Diguanylate cyclase, GGDEF domain CJO35_21010 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) CJO35_21025 PF00155 Aminotransferase class I and II CJO35_21040 PF07478 D-ala D-ala ligase C-terminus CJO35_21050 PF01116 Fructose-bisphosphate aldolase class-II CJO35_21055 PF01261 Xylose isomerase-like TIM barrel CJO35_21060 PF01261 Xylose isomerase-like TIM barrel CJO35_21065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO35_21065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO35_21070 PF07690 Major Facilitator Superfamily CJO35_21075 PF01261 Xylose isomerase-like TIM barrel CJO35_21080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO35_21080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO35_21080 PF00205 Thiamine pyrophosphate enzyme, central domain CJO35_21085 PF00294 pfkB family carbohydrate kinase CJO35_21090 PF04962 KduI/IolB family CJO35_21095 PF00171 Aldehyde dehydrogenase family CJO35_21100 PF00455 DeoR C terminal sensor domain CJO35_21100 PF08220 DeoR-like helix-turn-helix domain CJO35_21105 PF00248 Aldo/keto reductase family CJO35_21110 PF03009 Glycerophosphoryl diester phosphodiesterase family CJO35_21115 PF07690 Major Facilitator Superfamily CJO35_21120 PF00183 Hsp90 protein CJO35_21125 PF00005 ABC transporter CJO35_21125 PF12848 ABC transporter CJO35_21150 PF01497 Periplasmic binding protein CJO35_21170 PF07670 Nucleoside recognition CJO35_21170 PF17910 FeoB cytosolic helical domain CJO35_21170 PF02421 Ferrous iron transport protein B CJO35_21170 PF07664 Ferrous iron transport protein B C terminus CJO35_21180 PF01757 Acyltransferase family CJO35_21185 PF02687 FtsX-like permease family CJO35_21190 PF00005 ABC transporter CJO35_21195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_21200 PF00072 Response regulator receiver domain CJO35_21200 PF00486 Transcriptional regulatory protein, C terminal CJO35_21210 PF05227 CHASE3 domain CJO35_21210 PF00672 HAMP domain CJO35_21210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO35_21215 PF01235 Sodium:alanine symporter family CJO35_21220 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJO35_21220 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJO35_21225 PF07745 Glycosyl hydrolase family 53 CJO35_21230 PF08533 Beta-galactosidase C-terminal domain CJO35_21230 PF02449 Beta-galactosidase CJO35_21230 PF08532 Beta-galactosidase trimerisation domain CJO35_21235 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_21240 PF00528 Binding-protein-dependent transport system inner membrane component CJO35_21245 PF13416 Bacterial extracellular solute-binding protein CJO35_21250 PF00356 Bacterial regulatory proteins, lacI family CJO35_21255 PF10509 Galactokinase galactose-binding signature CJO35_21255 PF00288 GHMP kinases N terminal domain CJO35_21255 PF08544 GHMP kinases C terminal CJO35_21260 PF16363 GDP-mannose 4,6 dehydratase CJO35_21265 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CJO35_21265 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CJO35_21270 PF01325 Iron dependent repressor, N-terminal DNA binding domain CJO35_21270 PF00480 ROK family CJO35_21275 PF00392 Bacterial regulatory proteins, gntR family CJO35_21275 PF07729 FCD domain CJO35_21280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO35_21280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO35_21285 PF02447 GntP family permease CJO35_21290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO35_21290 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CJO35_21295 PF00171 Aldehyde dehydrogenase family CJO35_21295 PF00465 Iron-containing alcohol dehydrogenase CJO35_21300 PF00578 AhpC/TSA family CJO35_21305 PF13192 Thioredoxin domain CJO35_21305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO35_21330 PF00005 ABC transporter CJO35_21340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_21340 PF07730 Histidine kinase CJO35_21345 PF00196 Bacterial regulatory proteins, luxR family CJO35_21345 PF00072 Response regulator receiver domain CJO35_21360 PF00027 Cyclic nucleotide-binding domain CJO35_21360 PF00005 ABC transporter CJO35_21370 PF02590 Predicted SPOUT methyltransferase CJO35_21375 PF14116 YyzF-like protein CJO35_21385 PF00583 Acetyltransferase (GNAT) family CJO35_21400 PF13180 PDZ domain CJO35_21405 PF00753 Metallo-beta-lactamase superfamily CJO35_21410 PF09648 YycH protein CJO35_21415 PF07435 YycH protein CJO35_21420 PF00672 HAMP domain CJO35_21420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO35_21420 PF00512 His Kinase A (phospho-acceptor) domain CJO35_21420 PF13426 PAS domain CJO35_21425 PF00072 Response regulator receiver domain CJO35_21425 PF00486 Transcriptional regulatory protein, C terminal CJO35_21450 PF00293 NUDIX domain CJO35_21455 PF00709 Adenylosuccinate synthetase CJO35_21465 PF03796 DnaB-like helicase C terminal domain CJO35_21465 PF00772 DnaB-like helicase N terminal domain CJO35_21470 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) CJO35_21480 PF14174 YycC-like protein CJO35_21485 PF07690 Major Facilitator Superfamily CJO35_21490 PF01979 Amidohydrolase family CJO35_21495 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJO35_21505 PF01380 SIS domain CJO35_21510 PF00367 phosphotransferase system, EIIB CJO35_21510 PF02378 Phosphotransferase system, EIIC CJO35_21515 PF03948 Ribosomal protein L9, C-terminal domain CJO35_21515 PF01281 Ribosomal protein L9, N-terminal domain CJO35_21520 PF01368 DHH family CJO35_21520 PF02272 DHHA1 domain CJO35_21525 PF09991 Predicted membrane protein (DUF2232) CJO35_21535 PF07875 Coat F domain CJO35_21540 PF00582 Universal stress protein family CJO35_21545 PF00916 Sulfate permease family CJO35_21545 PF01740 STAS domain CJO35_21550 PF07690 Major Facilitator Superfamily CJO35_21555 PF01084 Ribosomal protein S18 CJO35_21560 PF00436 Single-strand binding protein family CJO35_21565 PF01250 Ribosomal protein S6 CJO35_21570 PF01926 50S ribosome-binding GTPase CJO35_21570 PF06071 Protein of unknown function (DUF933) CJO35_21580 PF06107 Bacterial protein of unknown function (DUF951) CJO35_21590 PF06866 Protein of unknown function (DUF1256) CJO35_21595 PF17762 HTH domain found in ParB protein CJO35_21595 PF02195 ParB-like nuclease domain CJO35_21600 PF13614 AAA domain CJO35_21605 PF02627 Carboxymuconolactone decarboxylase family CJO35_21615 PF17762 HTH domain found in ParB protein CJO35_21615 PF02195 ParB-like nuclease domain CJO35_21620 PF02527 rRNA small subunit methyltransferase G CJO35_21625 PF13932 GidA associated domain CJO35_21625 PF01134 Glucose inhibited division protein A CJO35_21630 PF01926 50S ribosome-binding GTPase CJO35_21630 PF10396 GTP-binding protein TrmE N-terminus CJO35_21630 PF12631 MnmE helical domain CJO35_21635 PF14804 Jag N-terminus CJO35_21635 PF01424 R3H domain CJO35_21640 PF02096 60Kd inner membrane protein CJO35_21645 PF00825 Ribonuclease P CJO35_21650 PF00468 Ribosomal protein L34