CJO35_00070	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJO35_00070	PWY-6596	adenosine nucleotides degradation I
CJO35_00070	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJO35_00075	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_00075	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_00080	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CJO35_00085	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
CJO35_00090	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CJO35_00220	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJO35_00220	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_00220	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_00220	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJO35_00220	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJO35_00220	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJO35_00310	PWY-7560	methylerythritol phosphate pathway II
CJO35_00330	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJO35_00345	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CJO35_00430	PWY-6599	guanine and guanosine salvage II
CJO35_00430	PWY-6609	adenine and adenosine salvage III
CJO35_00430	PWY-6610	adenine and adenosine salvage IV
CJO35_00430	PWY-6620	guanine and guanosine salvage
CJO35_00440	PWY-3961	phosphopantothenate biosynthesis II
CJO35_00455	PWY-6936	seleno-amino acid biosynthesis
CJO35_00465	PWY-5958	acridone alkaloid biosynthesis
CJO35_00465	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJO35_00465	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJO35_00470	PWY-5958	acridone alkaloid biosynthesis
CJO35_00470	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJO35_00470	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJO35_00480	PWY-6614	tetrahydrofolate biosynthesis
CJO35_00485	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJO35_00485	PWY-6148	tetrahydromethanopterin biosynthesis
CJO35_00485	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJO35_00485	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJO35_00490	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJO35_00490	PWY-6148	tetrahydromethanopterin biosynthesis
CJO35_00490	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CJO35_00490	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJO35_00490	PWY-7852	CJO35_00490
CJO35_00490	PWY-7853	CJO35_00490
CJO35_00620	PWY-7560	methylerythritol phosphate pathway II
CJO35_00625	PWY-7560	methylerythritol phosphate pathway II
CJO35_00630	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_00635	PWY-6936	seleno-amino acid biosynthesis
CJO35_00635	PWY-7274	D-cycloserine biosynthesis
CJO35_00635	PWY-7870	CJO35_00635
CJO35_00850	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJO35_00855	PWY-7799	CJO35_00855
CJO35_00855	PWY-7800	CJO35_00855
CJO35_00935	PWY-7883	CJO35_00935
CJO35_01070	PWY-31	canavanine degradation
CJO35_01070	PWY-4984	urea cycle
CJO35_01070	PWY-6305	putrescine biosynthesis IV
CJO35_01070	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_01095	PWY-6749	CMP-legionaminate biosynthesis I
CJO35_01100	PWY-6749	CMP-legionaminate biosynthesis I
CJO35_01330	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CJO35_01360	PWY-6349	CDP-archaeol biosynthesis
CJO35_01495	PWY-6486	D-galacturonate degradation II
CJO35_01495	PWY-6497	D-galactarate degradation II
CJO35_01495	PWY-6499	D-glucarate degradation II
CJO35_01495	PWY-6501	D-glucuronate degradation II
CJO35_01510	PWY-6499	D-glucarate degradation II
CJO35_01520	PWY-6497	D-galactarate degradation II
CJO35_01695	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJO35_01755	PWY-6855	chitin degradation I (archaea)
CJO35_01755	PWY-6902	chitin degradation II
CJO35_01755	PWY-7822	CJO35_01755
CJO35_01760	PWY-6855	chitin degradation I (archaea)
CJO35_01760	PWY-6902	chitin degradation II
CJO35_01760	PWY-7822	CJO35_01760
CJO35_01785	PWY-5350	thiosulfate disproportionation III (rhodanese)
CJO35_01785	PWY-7927	CJO35_01785
CJO35_01895	PWY-5481	pyruvate fermentation to lactate
CJO35_01895	PWY-6901	superpathway of glucose and xylose degradation
CJO35_01920	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJO35_01930	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CJO35_01930	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_01935	PWY-6853	ethylene biosynthesis II (microbes)
CJO35_02090	PWY-6012	acyl carrier protein metabolism I
CJO35_02090	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CJO35_02090	PWY-6289	petrobactin biosynthesis
CJO35_02160	PWY-3341	L-proline biosynthesis III
CJO35_02160	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_02160	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJO35_02160	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_02170	PWY-31	canavanine degradation
CJO35_02170	PWY-4984	urea cycle
CJO35_02170	PWY-6305	putrescine biosynthesis IV
CJO35_02170	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_02185	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CJO35_02185	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CJO35_02185	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CJO35_02185	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CJO35_02185	PWY-6978	plastoquinol-9 biosynthesis II
CJO35_02195	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CJO35_02195	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJO35_02290	PWY-6807	xyloglucan degradation II (exoglucanase)
CJO35_02300	PWY-4702	phytate degradation I
CJO35_02365	PWY-2941	L-lysine biosynthesis II
CJO35_02365	PWY-2942	L-lysine biosynthesis III
CJO35_02365	PWY-5097	L-lysine biosynthesis VI
CJO35_02365	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CJO35_02365	PWY-6559	spermidine biosynthesis II
CJO35_02365	PWY-6562	norspermidine biosynthesis
CJO35_02365	PWY-7153	grixazone biosynthesis
CJO35_02365	PWY-7977	CJO35_02365
CJO35_02465	PWY-6683	sulfate reduction III (assimilatory)
CJO35_02475	PWY-6683	sulfate reduction III (assimilatory)
CJO35_02485	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_02485	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJO35_02485	PWY-5194	siroheme biosynthesis
CJO35_02485	PWY-5196	factor 430 biosynthesis
CJO35_02485	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJO35_02535	PWY-6891	thiazole biosynthesis II (Bacillus)
CJO35_02535	PWY-6892	thiazole biosynthesis I (E. coli)
CJO35_02535	PWY-7560	methylerythritol phosphate pathway II
CJO35_02550	PWY-4041	&gamma;-glutamyl cycle
CJO35_02550	PWY-7942	CJO35_02550
CJO35_02565	PWY-4041	&gamma;-glutamyl cycle
CJO35_02565	PWY-7942	CJO35_02565
CJO35_02595	PWY-6531	mannitol cycle
CJO35_02690	PWY-5392	reductive TCA cycle II
CJO35_02690	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJO35_02690	PWY-5690	TCA cycle II (plants and fungi)
CJO35_02690	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_02690	PWY-6728	methylaspartate cycle
CJO35_02690	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_02690	PWY-7254	TCA cycle VII (acetate-producers)
CJO35_02690	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJO35_02770	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_02770	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_02770	PWY-7953	CJO35_02770
CJO35_02775	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_02775	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_02775	PWY-7953	CJO35_02775
CJO35_02810	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJO35_03015	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CJO35_03015	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CJO35_03015	PWY-7717	CJO35_03015
CJO35_03015	PWY-7733	CJO35_03015
CJO35_03015	PWY-7734	CJO35_03015
CJO35_03015	PWY-7765	CJO35_03015
CJO35_03115	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJO35_03115	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJO35_03115	PWY-6896	thiamin salvage I
CJO35_03115	PWY-6897	thiamin salvage II
CJO35_03145	PWY-6823	molybdenum cofactor biosynthesis
CJO35_03310	PWY-7511	protein ubiquitylation
CJO35_03315	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_03315	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_03315	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_03315	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_03320	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_03320	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_03320	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_03320	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_03395	PWY-2721	trehalose degradation III
CJO35_03395	PWY-2722	trehalose degradation IV
CJO35_03395	PWY-7459	kojibiose degradation
CJO35_03500	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJO35_03535	PWY-6123	inosine-5'-phosphate biosynthesis I
CJO35_03535	PWY-7234	inosine-5'-phosphate biosynthesis III
CJO35_03545	PWY-6123	inosine-5'-phosphate biosynthesis I
CJO35_03545	PWY-6124	inosine-5'-phosphate biosynthesis II
CJO35_03545	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJO35_03545	PWY-7234	inosine-5'-phosphate biosynthesis III
CJO35_03550	PWY-6123	inosine-5'-phosphate biosynthesis I
CJO35_03550	PWY-6124	inosine-5'-phosphate biosynthesis II
CJO35_03550	PWY-7234	inosine-5'-phosphate biosynthesis III
CJO35_03555	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJO35_03555	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJO35_03555	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJO35_03560	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJO35_03560	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJO35_03560	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJO35_03565	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJO35_03565	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJO35_03565	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJO35_03570	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJO35_03570	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJO35_03570	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJO35_03570	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CJO35_03575	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJO35_03575	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJO35_03575	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJO35_03580	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJO35_03580	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJO35_03585	PWY-6123	inosine-5'-phosphate biosynthesis I
CJO35_03585	PWY-6124	inosine-5'-phosphate biosynthesis II
CJO35_03585	PWY-7234	inosine-5'-phosphate biosynthesis III
CJO35_03590	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CJO35_03590	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CJO35_03590	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CJO35_03625	PWY-6610	adenine and adenosine salvage IV
CJO35_03690	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CJO35_03695	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJO35_03700	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJO35_03700	PWY-6855	chitin degradation I (archaea)
CJO35_03700	PWY-6906	chitin derivatives degradation
CJO35_03720	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJO35_03865	PWY-5663	tetrahydrobiopterin biosynthesis I
CJO35_03865	PWY-5664	tetrahydrobiopterin biosynthesis II
CJO35_03865	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJO35_03865	PWY-6703	preQ<sub>0</sub> biosynthesis
CJO35_03865	PWY-6983	tetrahydrobiopterin biosynthesis III
CJO35_03865	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJO35_03865	PWY-7852	CJO35_03865
CJO35_03885	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CJO35_03895	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJO35_03895	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CJO35_03895	PWY-7147	8-amino-7-oxononanoate biosynthesis II
CJO35_03900	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJO35_03905	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
CJO35_04020	PWY-7799	CJO35_04020
CJO35_04020	PWY-7800	CJO35_04020
CJO35_04055	PWY-6936	seleno-amino acid biosynthesis
CJO35_04055	PWY-7274	D-cycloserine biosynthesis
CJO35_04055	PWY-7870	CJO35_04055
CJO35_04205	PWY-6349	CDP-archaeol biosynthesis
CJO35_04320	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJO35_04320	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJO35_04370	PWY-5386	methylglyoxal degradation I
CJO35_04565	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_04750	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJO35_04750	PWY-6416	quinate degradation II
CJO35_04750	PWY-6707	gallate biosynthesis
CJO35_04755	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CJO35_04830	PWY-6700	queuosine biosynthesis
CJO35_05040	PWY-4261	glycerol degradation I
CJO35_05045	PWY-4261	glycerol degradation I
CJO35_05045	PWY-6118	glycerol-3-phosphate shuttle
CJO35_05045	PWY-6952	glycerophosphodiester degradation
CJO35_05050	PWY-6749	CMP-legionaminate biosynthesis I
CJO35_05180	PWY-5667	CDP-diacylglycerol biosynthesis I
CJO35_05180	PWY-5981	CDP-diacylglycerol biosynthesis III
CJO35_05180	PWY-6453	stigma estolide biosynthesis
CJO35_05180	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CJO35_05180	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
CJO35_05180	PWY-7587	oleate biosynthesis III (cyanobacteria)
CJO35_05180	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
CJO35_05180	PWY-7782	CJO35_05180
CJO35_05545	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_05545	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_05545	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_05545	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_05550	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CJO35_05550	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CJO35_05550	PWY-7766	CJO35_05550
CJO35_05560	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CJO35_05575	PWY-4381	fatty acid biosynthesis initiation I
CJO35_05605	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJO35_05605	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJO35_05730	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
CJO35_05730	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CJO35_05740	PWY-5692	allantoin degradation to glyoxylate II
CJO35_05740	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CJO35_05755	PWY-5392	reductive TCA cycle II
CJO35_05755	PWY-5537	pyruvate fermentation to acetate V
CJO35_05755	PWY-5538	pyruvate fermentation to acetate VI
CJO35_05755	PWY-5690	TCA cycle II (plants and fungi)
CJO35_05755	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_05755	PWY-6728	methylaspartate cycle
CJO35_05755	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_05755	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJO35_06045	PWY-6409	pyoverdine I biosynthesis
CJO35_06045	PWY-6562	norspermidine biosynthesis
CJO35_06045	PWY-761	rhizobactin 1021 biosynthesis
CJO35_06045	PWY-7855	CJO35_06045
CJO35_06045	PWY-7988	CJO35_06045
CJO35_06090	PWY-2201	folate transformations I
CJO35_06090	PWY-3841	folate transformations II
CJO35_06090	PWY-7977	CJO35_06090
CJO35_06095	PWY-2201	folate transformations I
CJO35_06095	PWY-3841	folate transformations II
CJO35_06165	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_06165	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_06170	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_06175	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_06175	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_06185	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_06185	PWY-5686	UMP biosynthesis
CJO35_06185	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_06185	PWY-7790	CJO35_06185
CJO35_06185	PWY-7791	CJO35_06185
CJO35_06190	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_06190	PWY-5686	UMP biosynthesis
CJO35_06190	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_06190	PWY-7790	CJO35_06190
CJO35_06190	PWY-7791	CJO35_06190
CJO35_06195	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_06195	PWY-4984	urea cycle
CJO35_06195	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_06200	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CJO35_06240	PWY-4381	fatty acid biosynthesis initiation I
CJO35_06425	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJO35_06425	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJO35_06425	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CJO35_06450	PWY-6899	base-degraded thiamin salvage
CJO35_06450	PWY-7356	thiamin salvage IV (yeast)
CJO35_06455	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJO35_06455	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJO35_06455	PWY-6897	thiamin salvage II
CJO35_06455	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJO35_06455	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJO35_06455	PWY-7356	thiamin salvage IV (yeast)
CJO35_06455	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJO35_06460	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJO35_06460	PWY-7806	CJO35_06460
CJO35_06470	PWY-6891	thiazole biosynthesis II (Bacillus)
CJO35_06470	PWY-6892	thiazole biosynthesis I (E. coli)
CJO35_06480	PWY-6910	hydroxymethylpyrimidine salvage
CJO35_06480	PWY-7356	thiamin salvage IV (yeast)
CJO35_06480	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJO35_06485	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJO35_06485	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJO35_06485	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJO35_06485	PWY-6113	superpathway of mycolate biosynthesis
CJO35_06485	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJO35_06485	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJO35_06485	PWY-7663	gondoate biosynthesis (anaerobic)
CJO35_06485	PWY-7664	oleate biosynthesis IV (anaerobic)
CJO35_06485	PWY-7858	CJO35_06485
CJO35_06485	PWYG-321	mycolate biosynthesis
CJO35_06555	PWY-3821	galactose degradation III
CJO35_06555	PWY-6317	galactose degradation I (Leloir pathway)
CJO35_06555	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJO35_06555	PWY-6527	stachyose degradation
CJO35_06555	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJO35_06555	PWY-7344	UDP-D-galactose biosynthesis
CJO35_06560	PWY-3801	sucrose degradation II (sucrose synthase)
CJO35_06560	PWY-6527	stachyose degradation
CJO35_06560	PWY-7238	sucrose biosynthesis II
CJO35_06560	PWY-7343	UDP-glucose biosynthesis
CJO35_06560	PWY-7817	CJO35_06560
CJO35_06665	PWY-6683	sulfate reduction III (assimilatory)
CJO35_06670	PWY-6683	sulfate reduction III (assimilatory)
CJO35_06925	PWY-7242	D-fructuronate degradation
CJO35_06965	PWY-4041	&gamma;-glutamyl cycle
CJO35_06965	PWY-4061	glutathione-mediated detoxification I
CJO35_06965	PWY-5826	hypoglycin biosynthesis
CJO35_06965	PWY-6842	glutathione-mediated detoxification II
CJO35_06965	PWY-7112	4-hydroxy-2-nonenal detoxification
CJO35_06965	PWY-7559	glutathione degradation (DUG pathway - yeast)
CJO35_07055	PWY-6807	xyloglucan degradation II (exoglucanase)
CJO35_07100	PWY-3341	L-proline biosynthesis III
CJO35_07100	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_07100	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJO35_07200	PWY-2201	folate transformations I
CJO35_07200	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_07200	PWY-7909	CJO35_07200
CJO35_07205	PWY-3341	L-proline biosynthesis III
CJO35_07205	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_07210	PWY-3341	L-proline biosynthesis III
CJO35_07210	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_07255	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJO35_07255	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJO35_07255	PWY-6936	seleno-amino acid biosynthesis
CJO35_07255	PWY-702	L-methionine biosynthesis II
CJO35_07700	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
CJO35_07715	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CJO35_07715	PWY-5532	adenosine nucleotides degradation IV
CJO35_07715	PWY-5723	Rubisco shunt
CJO35_07720	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CJO35_07725	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
CJO35_07725	PWY-5389	3-methylthiopropanoate biosynthesis
CJO35_07735	PWY-7511	protein ubiquitylation
CJO35_07775	PWY-6703	preQ<sub>0</sub> biosynthesis
CJO35_07785	PWY-6703	preQ<sub>0</sub> biosynthesis
CJO35_07790	PWY-6700	queuosine biosynthesis
CJO35_07865	PWY-7799	CJO35_07865
CJO35_07865	PWY-7800	CJO35_07865
CJO35_08050	PWY-2941	L-lysine biosynthesis II
CJO35_08055	PWY-2941	L-lysine biosynthesis II
CJO35_08085	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CJO35_08085	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
CJO35_08095	PWY-6823	molybdenum cofactor biosynthesis
CJO35_08105	PWY-6823	molybdenum cofactor biosynthesis
CJO35_08105	PWY-7887	CJO35_08105
CJO35_08220	PWY-6610	adenine and adenosine salvage IV
CJO35_08275	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJO35_08275	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJO35_08395	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_08395	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_08395	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_08395	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_08400	PWY-5750	itaconate biosynthesis
CJO35_08400	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_08400	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CJO35_08420	PWY-3781	aerobic respiration I (cytochrome c)
CJO35_08420	PWY-4521	arsenite oxidation I (respiratory)
CJO35_08420	PWY-6692	Fe(II) oxidation
CJO35_08420	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJO35_08430	PWY-3781	aerobic respiration I (cytochrome c)
CJO35_08430	PWY-4521	arsenite oxidation I (respiratory)
CJO35_08430	PWY-6692	Fe(II) oxidation
CJO35_08430	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJO35_08480	PWY-7851	CJO35_08480
CJO35_08520	PWY-6654	phosphopantothenate biosynthesis III
CJO35_08560	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_08560	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_08560	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_08565	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_08565	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_08570	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_08570	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_08570	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_08570	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_08575	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_08575	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_08575	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_08575	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_08580	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_08580	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_08580	PWY-7953	CJO35_08580
CJO35_08660	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJO35_08695	PWY-7884	CJO35_08695
CJO35_08705	PWY-7183	pyrimidine nucleobases salvage I
CJO35_08715	PWY-5686	UMP biosynthesis
CJO35_08715	PWY-7790	CJO35_08715
CJO35_08715	PWY-7791	CJO35_08715
CJO35_08720	PWY-5686	UMP biosynthesis
CJO35_08720	PWY-7790	CJO35_08720
CJO35_08720	PWY-7791	CJO35_08720
CJO35_08725	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_08725	PWY-5686	UMP biosynthesis
CJO35_08725	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_08725	PWY-7790	CJO35_08725
CJO35_08725	PWY-7791	CJO35_08725
CJO35_08730	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_08730	PWY-5686	UMP biosynthesis
CJO35_08730	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_08730	PWY-7790	CJO35_08730
CJO35_08730	PWY-7791	CJO35_08730
CJO35_08745	PWY-5686	UMP biosynthesis
CJO35_08745	PWY-7790	CJO35_08745
CJO35_08745	PWY-7791	CJO35_08745
CJO35_08750	PWY-5686	UMP biosynthesis
CJO35_08750	PWY-7790	CJO35_08750
CJO35_08750	PWY-7791	CJO35_08750
CJO35_08770	PWY-5278	sulfite oxidation III
CJO35_08770	PWY-5340	sulfate activation for sulfonation
CJO35_08770	PWY-6683	sulfate reduction III (assimilatory)
CJO35_08770	PWY-6932	selenate reduction
CJO35_08775	PWY-5340	sulfate activation for sulfonation
CJO35_08780	PWY-5194	siroheme biosynthesis
CJO35_08780	PWY-5196	factor 430 biosynthesis
CJO35_08780	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJO35_08785	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJO35_08790	PWY-5194	siroheme biosynthesis
CJO35_08790	PWY-5196	factor 430 biosynthesis
CJO35_08790	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CJO35_08815	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJO35_08825	PWY-7851	CJO35_08825
CJO35_08870	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_08870	PWY-5723	Rubisco shunt
CJO35_08875	PWY-6898	thiamin salvage III
CJO35_08875	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJO35_08875	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJO35_08875	PWY-7356	thiamin salvage IV (yeast)
CJO35_08925	PWY-4381	fatty acid biosynthesis initiation I
CJO35_08925	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CJO35_08925	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJO35_08930	PWY-5367	petroselinate biosynthesis
CJO35_08930	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJO35_08930	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJO35_08930	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJO35_08930	PWY-5994	palmitate biosynthesis I (animals and fungi)
CJO35_08930	PWY-6113	superpathway of mycolate biosynthesis
CJO35_08930	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJO35_08930	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJO35_08930	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJO35_08930	PWY-7663	gondoate biosynthesis (anaerobic)
CJO35_08930	PWY-7664	oleate biosynthesis IV (anaerobic)
CJO35_08930	PWY-7858	CJO35_08930
CJO35_08930	PWYG-321	mycolate biosynthesis
CJO35_08985	PWY-6829	tRNA methylation (yeast)
CJO35_08985	PWY-7285	methylwyosine biosynthesis
CJO35_08985	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CJO35_09015	PWY-5392	reductive TCA cycle II
CJO35_09015	PWY-5537	pyruvate fermentation to acetate V
CJO35_09015	PWY-5538	pyruvate fermentation to acetate VI
CJO35_09015	PWY-5690	TCA cycle II (plants and fungi)
CJO35_09015	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_09015	PWY-6728	methylaspartate cycle
CJO35_09015	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_09015	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJO35_09020	PWY-5392	reductive TCA cycle II
CJO35_09020	PWY-5537	pyruvate fermentation to acetate V
CJO35_09020	PWY-5538	pyruvate fermentation to acetate VI
CJO35_09020	PWY-5690	TCA cycle II (plants and fungi)
CJO35_09020	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_09020	PWY-6728	methylaspartate cycle
CJO35_09020	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_09020	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJO35_09090	PWY-7980	CJO35_09090
CJO35_09245	PWY-5667	CDP-diacylglycerol biosynthesis I
CJO35_09245	PWY-5981	CDP-diacylglycerol biosynthesis III
CJO35_09245	PWY-7817	CJO35_09245
CJO35_09250	PWY-7560	methylerythritol phosphate pathway II
CJO35_09275	PWY-6788	cellulose degradation II (fungi)
CJO35_09285	PWY-6788	cellulose degradation II (fungi)
CJO35_09335	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CJO35_09335	PWY-6167	flavin biosynthesis II (archaea)
CJO35_09335	PWY-6168	flavin biosynthesis III (fungi)
CJO35_09335	PWY-7863	CJO35_09335
CJO35_09375	PWY-2941	L-lysine biosynthesis II
CJO35_09375	PWY-2942	L-lysine biosynthesis III
CJO35_09375	PWY-5097	L-lysine biosynthesis VI
CJO35_09375	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_09375	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CJO35_09375	PWY-6559	spermidine biosynthesis II
CJO35_09375	PWY-6562	norspermidine biosynthesis
CJO35_09375	PWY-7153	grixazone biosynthesis
CJO35_09375	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_09375	PWY-7977	CJO35_09375
CJO35_09380	PWY-2941	L-lysine biosynthesis II
CJO35_09380	PWY-2942	L-lysine biosynthesis III
CJO35_09380	PWY-5097	L-lysine biosynthesis VI
CJO35_09380	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CJO35_09380	PWY-6559	spermidine biosynthesis II
CJO35_09380	PWY-6562	norspermidine biosynthesis
CJO35_09380	PWY-7153	grixazone biosynthesis
CJO35_09380	PWY-7977	CJO35_09380
CJO35_09385	PWY-2941	L-lysine biosynthesis II
CJO35_09385	PWY-2942	L-lysine biosynthesis III
CJO35_09385	PWY-5097	L-lysine biosynthesis VI
CJO35_09450	PWY-5269	cardiolipin biosynthesis II
CJO35_09450	PWY-5668	cardiolipin biosynthesis I
CJO35_09450	PWY-7817	CJO35_09450
CJO35_09480	PWY-7533	gliotoxin biosynthesis
CJO35_09485	PWY-7378	aminopropanol phosphate biosynthesis II
CJO35_09490	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJO35_09490	PWY-6578	8-amino-7-oxononanoate biosynthesis III
CJO35_09490	PWY-7147	8-amino-7-oxononanoate biosynthesis II
CJO35_09700	PWY-2781	<i>cis</i>-zeatin biosynthesis
CJO35_09725	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJO35_09725	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_09725	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJO35_09725	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJO35_09725	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_09725	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_09725	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_09725	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJO35_09730	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJO35_09730	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_09730	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJO35_09730	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJO35_09730	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_09730	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_09730	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_09730	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJO35_09870	PWY-381	nitrate reduction II (assimilatory)
CJO35_09870	PWY-5675	nitrate reduction V (assimilatory)
CJO35_09870	PWY-6549	L-glutamine biosynthesis III
CJO35_09870	PWY-6963	ammonia assimilation cycle I
CJO35_09870	PWY-6964	ammonia assimilation cycle II
CJO35_10035	PWY-7731	CJO35_10035
CJO35_10050	PWY-3841	folate transformations II
CJO35_10050	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_10050	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_10050	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJO35_10050	PWY-7199	pyrimidine deoxyribonucleosides salvage
CJO35_10050	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJO35_10080	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_10080	PWY-5723	Rubisco shunt
CJO35_10080	PWY-6891	thiazole biosynthesis II (Bacillus)
CJO35_10080	PWY-6892	thiazole biosynthesis I (E. coli)
CJO35_10080	PWY-6901	superpathway of glucose and xylose degradation
CJO35_10080	PWY-7560	methylerythritol phosphate pathway II
CJO35_10235	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJO35_10265	PWY-6748	nitrate reduction VII (denitrification)
CJO35_10270	PWY-6748	nitrate reduction VII (denitrification)
CJO35_10320	PWY-3781	aerobic respiration I (cytochrome c)
CJO35_10320	PWY-4521	arsenite oxidation I (respiratory)
CJO35_10320	PWY-6692	Fe(II) oxidation
CJO35_10320	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJO35_10415	PWY-5642	2,4-dinitrotoluene degradation
CJO35_10430	PWY-3861	mannitol degradation II
CJO35_10430	PWY-3881	mannitol biosynthesis
CJO35_10430	PWY-5659	GDP-mannose biosynthesis
CJO35_10430	PWY-6992	1,5-anhydrofructose degradation
CJO35_10430	PWY-7456	mannan degradation
CJO35_10430	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CJO35_10430	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CJO35_10480	PWY-7242	D-fructuronate degradation
CJO35_10560	PWY-5480	pyruvate fermentation to ethanol I
CJO35_10560	PWY-5485	pyruvate fermentation to acetate IV
CJO35_10560	PWY-5493	reductive monocarboxylic acid cycle
CJO35_10565	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_10565	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_10595	PWY-5108	L-isoleucine biosynthesis V
CJO35_10595	PWY-5132	humulone biosynthesis
CJO35_10595	PWY-5133	cohumulone biosynthesis
CJO35_10595	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CJO35_10595	PWY-7118	chitin degradation to ethanol
CJO35_10595	PWY-7857	CJO35_10595
CJO35_10600	PWY-4381	fatty acid biosynthesis initiation I
CJO35_10600	PWY-5743	3-hydroxypropanoate cycle
CJO35_10600	PWY-5744	glyoxylate assimilation
CJO35_10600	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_10600	PWY-6722	candicidin biosynthesis
CJO35_10645	PWY-3341	L-proline biosynthesis III
CJO35_10645	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_10650	PWY-3341	L-proline biosynthesis III
CJO35_10650	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CJO35_10655	PWY-3341	L-proline biosynthesis III
CJO35_10655	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_10655	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJO35_11035	PWY-1881	formate oxidation to CO<sub>2</sub>
CJO35_11035	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_11035	PWY-6696	oxalate degradation III
CJO35_11035	PWY-7985	CJO35_11035
CJO35_11220	PWY-6854	ethylene biosynthesis III (microbes)
CJO35_11240	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJO35_11245	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJO35_11260	PWY-6854	ethylene biosynthesis III (microbes)
CJO35_11365	PWY-4202	arsenate detoxification I (glutaredoxin)
CJO35_11365	PWY-5532	adenosine nucleotides degradation IV
CJO35_11365	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJO35_11365	PWY-6608	guanosine nucleotides degradation III
CJO35_11365	PWY-6609	adenine and adenosine salvage III
CJO35_11365	PWY-6611	adenine and adenosine salvage V
CJO35_11365	PWY-6620	guanine and guanosine salvage
CJO35_11365	PWY-6627	salinosporamide A biosynthesis
CJO35_11365	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CJO35_11365	PWY-7179	purine deoxyribonucleosides degradation I
CJO35_11365	PWY-7179-1	purine deoxyribonucleosides degradation
CJO35_11550	PWY-3841	folate transformations II
CJO35_11550	PWY-6614	tetrahydrofolate biosynthesis
CJO35_11575	PWY-5101	L-isoleucine biosynthesis II
CJO35_11575	PWY-5103	L-isoleucine biosynthesis III
CJO35_11575	PWY-5104	L-isoleucine biosynthesis IV
CJO35_11575	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJO35_11595	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CJO35_11595	PWY-2161	folate polyglutamylation
CJO35_11595	PWY-2201	folate transformations I
CJO35_11595	PWY-3841	folate transformations II
CJO35_11605	PWY-7817	CJO35_11605
CJO35_11685	PWY-5135	xanthohumol biosynthesis
CJO35_11685	PWY-6316	aromatic polyketides biosynthesis
CJO35_11685	PWY-6515	phloridzin biosynthesis
CJO35_11685	PWY-6787	flavonoid biosynthesis (in equisetum)
CJO35_11685	PWY-7397	naringenin biosynthesis (engineered)
CJO35_11685	PWY-7897	CJO35_11685
CJO35_11805	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_11805	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_11805	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_11805	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_11850	PWY-5155	&beta;-alanine biosynthesis III
CJO35_11860	PWY-6654	phosphopantothenate biosynthesis III
CJO35_11870	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJO35_11870	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJO35_11895	PWY-2941	L-lysine biosynthesis II
CJO35_11895	PWY-2942	L-lysine biosynthesis III
CJO35_11895	PWY-5097	L-lysine biosynthesis VI
CJO35_11930	PWY-101	photosynthesis light reactions
CJO35_11950	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJO35_11955	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CJO35_11990	PWY-5958	acridone alkaloid biosynthesis
CJO35_11990	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CJO35_11990	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CJO35_11995	PWY-3461	L-tyrosine biosynthesis II
CJO35_11995	PWY-3462	L-phenylalanine biosynthesis II
CJO35_11995	PWY-6120	L-tyrosine biosynthesis III
CJO35_11995	PWY-6627	salinosporamide A biosynthesis
CJO35_11995	PWY-7626	bacilysin biosynthesis
CJO35_12000	PWY-6164	3-dehydroquinate biosynthesis I
CJO35_12005	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJO35_12015	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CJO35_12015	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJO35_12015	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_12015	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_12015	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CJO35_12015	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CJO35_12015	PWY-7205	CMP phosphorylation
CJO35_12015	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJO35_12015	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_12015	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CJO35_12015	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_12015	PWY-7224	purine deoxyribonucleosides salvage
CJO35_12015	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CJO35_12015	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CJO35_12020	PWY-5807	heptaprenyl diphosphate biosynthesis
CJO35_12025	PWY-5839	menaquinol-7 biosynthesis
CJO35_12025	PWY-5844	menaquinol-9 biosynthesis
CJO35_12025	PWY-5849	menaquinol-6 biosynthesis
CJO35_12025	PWY-5890	menaquinol-10 biosynthesis
CJO35_12025	PWY-5891	menaquinol-11 biosynthesis
CJO35_12025	PWY-5892	menaquinol-12 biosynthesis
CJO35_12025	PWY-5895	menaquinol-13 biosynthesis
CJO35_12030	PWY-5807	heptaprenyl diphosphate biosynthesis
CJO35_12040	PWY-5663	tetrahydrobiopterin biosynthesis I
CJO35_12040	PWY-5664	tetrahydrobiopterin biosynthesis II
CJO35_12040	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CJO35_12040	PWY-6703	preQ<sub>0</sub> biosynthesis
CJO35_12040	PWY-6983	tetrahydrobiopterin biosynthesis III
CJO35_12040	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CJO35_12040	PWY-7852	CJO35_12040
CJO35_12070	PWY-5667	CDP-diacylglycerol biosynthesis I
CJO35_12070	PWY-5981	CDP-diacylglycerol biosynthesis III
CJO35_12070	PWY-7902	CJO35_12070
CJO35_12100	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
CJO35_12100	PWY-6174	mevalonate pathway II (archaea)
CJO35_12100	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
CJO35_12100	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
CJO35_12100	PWY-7102	bisabolene biosynthesis
CJO35_12100	PWY-7391	isoprene biosynthesis II (engineered)
CJO35_12100	PWY-7524	mevalonate pathway III (archaea)
CJO35_12100	PWY-7560	methylerythritol phosphate pathway II
CJO35_12100	PWY-922	mevalonate pathway I
CJO35_12110	PWY-7205	CMP phosphorylation
CJO35_12280	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_12280	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_12315	PWY-6167	flavin biosynthesis II (archaea)
CJO35_12315	PWY-6168	flavin biosynthesis III (fungi)
CJO35_12320	PWY-6167	flavin biosynthesis II (archaea)
CJO35_12320	PWY-6168	flavin biosynthesis III (fungi)
CJO35_12320	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CJO35_12320	PWY-7991	CJO35_12320
CJO35_12325	PWY-6167	flavin biosynthesis II (archaea)
CJO35_12325	PWY-6168	flavin biosynthesis III (fungi)
CJO35_12325	PWY-7980	CJO35_12325
CJO35_12330	PWY-7991	CJO35_12330
CJO35_12375	PWY-2941	L-lysine biosynthesis II
CJO35_12375	PWY-2942	L-lysine biosynthesis III
CJO35_12375	PWY-5097	L-lysine biosynthesis VI
CJO35_12435	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_12435	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_12440	PWY-4202	arsenate detoxification I (glutaredoxin)
CJO35_12440	PWY-5532	adenosine nucleotides degradation IV
CJO35_12440	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CJO35_12440	PWY-6608	guanosine nucleotides degradation III
CJO35_12440	PWY-6609	adenine and adenosine salvage III
CJO35_12440	PWY-6611	adenine and adenosine salvage V
CJO35_12440	PWY-6620	guanine and guanosine salvage
CJO35_12440	PWY-6627	salinosporamide A biosynthesis
CJO35_12440	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CJO35_12440	PWY-7179	purine deoxyribonucleosides degradation I
CJO35_12440	PWY-7179-1	purine deoxyribonucleosides degradation
CJO35_12445	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CJO35_12565	PWY-6857	retinol biosynthesis
CJO35_12635	PWY-3961	phosphopantothenate biosynthesis II
CJO35_12690	PWY-3341	L-proline biosynthesis III
CJO35_12690	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_12690	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJO35_12720	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJO35_12765	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJO35_12765	PWY-5491	diethylphosphate degradation
CJO35_12800	PWY-4381	fatty acid biosynthesis initiation I
CJO35_12800	PWY-5743	3-hydroxypropanoate cycle
CJO35_12800	PWY-5744	glyoxylate assimilation
CJO35_12800	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_12800	PWY-6722	candicidin biosynthesis
CJO35_12850	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CJO35_12850	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CJO35_12855	PWY-5482	pyruvate fermentation to acetate II
CJO35_12855	PWY-5485	pyruvate fermentation to acetate IV
CJO35_12855	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_12865	PWY-1281	sulfoacetaldehyde degradation I
CJO35_12865	PWY-5482	pyruvate fermentation to acetate II
CJO35_12865	PWY-5485	pyruvate fermentation to acetate IV
CJO35_12865	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_12865	PWY-6637	sulfolactate degradation II
CJO35_12900	PWY-6936	seleno-amino acid biosynthesis
CJO35_12900	PWY-7274	D-cycloserine biosynthesis
CJO35_12900	PWY-7870	CJO35_12900
CJO35_12935	PWY-6891	thiazole biosynthesis II (Bacillus)
CJO35_12935	PWY-6892	thiazole biosynthesis I (E. coli)
CJO35_12935	PWY-7560	methylerythritol phosphate pathway II
CJO35_12955	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CJO35_12955	PWY-2201	folate transformations I
CJO35_12955	PWY-3841	folate transformations II
CJO35_12955	PWY-5030	L-histidine degradation III
CJO35_12955	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_12955	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CJO35_12955	PWY-7909	CJO35_12955
CJO35_13030	PWY-7799	CJO35_13030
CJO35_13030	PWY-7800	CJO35_13030
CJO35_13035	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJO35_13035	PWY-6416	quinate degradation II
CJO35_13035	PWY-6707	gallate biosynthesis
CJO35_13065	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJO35_13065	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJO35_13240	PWY-2722	trehalose degradation IV
CJO35_13240	PWY-2723	trehalose degradation V
CJO35_13240	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJO35_13240	PWY-5661	GDP-glucose biosynthesis
CJO35_13240	PWY-621	sucrose degradation III (sucrose invertase)
CJO35_13240	PWY-7238	sucrose biosynthesis II
CJO35_13240	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJO35_13330	PWY-6854	ethylene biosynthesis III (microbes)
CJO35_13405	PWY-7560	methylerythritol phosphate pathway II
CJO35_13540	PWY-6556	pyrimidine ribonucleosides salvage II
CJO35_13540	PWY-7181	pyrimidine deoxyribonucleosides degradation
CJO35_13540	PWY-7193	pyrimidine ribonucleosides salvage I
CJO35_13540	PWY-7199	pyrimidine deoxyribonucleosides salvage
CJO35_13545	PWY-7039	phosphatidate metabolism, as a signaling molecule
CJO35_13545	PWY-7817	CJO35_13545
CJO35_13605	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CJO35_13690	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CJO35_13700	PWY-3341	L-proline biosynthesis III
CJO35_13700	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_13700	PWY-6344	L-ornithine degradation II (Stickland reaction)
CJO35_13720	PWY-5381	pyridine nucleotide cycling (plants)
CJO35_13720	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJO35_13720	PWY-7761	CJO35_13720
CJO35_13730	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CJO35_13765	PWY-1881	formate oxidation to CO<sub>2</sub>
CJO35_13765	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_13765	PWY-6696	oxalate degradation III
CJO35_13765	PWY-7985	CJO35_13765
CJO35_13900	PWY-5350	thiosulfate disproportionation III (rhodanese)
CJO35_13900	PWY-7927	CJO35_13900
CJO35_13955	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_13955	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJO35_13965	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_13965	PWY-5686	UMP biosynthesis
CJO35_13965	PWY-7790	CJO35_13965
CJO35_13965	PWY-7791	CJO35_13965
CJO35_13965	PWY-7796	CJO35_13965
CJO35_13990	PWY-101	photosynthesis light reactions
CJO35_14150	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_14150	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJO35_14180	PWY-5451	acetone degradation I (to methylglyoxal)
CJO35_14180	PWY-5665	vanillin biosynthesis I
CJO35_14180	PWY-6398	melatonin degradation I
CJO35_14180	PWY-6992	1,5-anhydrofructose degradation
CJO35_14180	PWY-7466	acetone degradation III (to propane-1,2-diol)
CJO35_14180	PWY-7826	CJO35_14180
CJO35_14230	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJO35_14230	PWY-6153	autoinducer AI-2 biosynthesis I
CJO35_14230	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CJO35_14260	PWY-7193	pyrimidine ribonucleosides salvage I
CJO35_14335	PWY-7887	CJO35_14335
CJO35_14335	PWY-7892	CJO35_14335
CJO35_14340	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJO35_14380	PWY-7883	CJO35_14380
CJO35_14395	PWY-6605	adenine and adenosine salvage II
CJO35_14395	PWY-6610	adenine and adenosine salvage IV
CJO35_14395	PWY-7805	CJO35_14395
CJO35_14395	PWY-7807	CJO35_14395
CJO35_14400	PWY-7805	CJO35_14400
CJO35_14400	PWY-7807	CJO35_14400
CJO35_14440	PWY-6700	queuosine biosynthesis
CJO35_14445	PWY-6700	queuosine biosynthesis
CJO35_14515	PWY-5316	nicotine biosynthesis
CJO35_14515	PWY-7342	superpathway of nicotine biosynthesis
CJO35_14520	PWY-5316	nicotine biosynthesis
CJO35_14520	PWY-5381	pyridine nucleotide cycling (plants)
CJO35_14520	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CJO35_14520	PWY-7342	superpathway of nicotine biosynthesis
CJO35_14525	PWY-5316	nicotine biosynthesis
CJO35_14525	PWY-7342	superpathway of nicotine biosynthesis
CJO35_14530	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJO35_14540	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CJO35_14640	PWY-2161	folate polyglutamylation
CJO35_14665	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_14670	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_14670	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJO35_14675	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_14675	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJO35_14680	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_14680	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CJO35_14690	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CJO35_14740	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJO35_14745	PWY-6871	3-methylbutanol biosynthesis
CJO35_14750	PWY-5103	L-isoleucine biosynthesis III
CJO35_14750	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJO35_14755	PWY-5101	L-isoleucine biosynthesis II
CJO35_14755	PWY-5103	L-isoleucine biosynthesis III
CJO35_14755	PWY-5104	L-isoleucine biosynthesis IV
CJO35_14755	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJO35_14755	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJO35_14755	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJO35_14755	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJO35_14760	PWY-5101	L-isoleucine biosynthesis II
CJO35_14760	PWY-5103	L-isoleucine biosynthesis III
CJO35_14760	PWY-5104	L-isoleucine biosynthesis IV
CJO35_14760	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJO35_14760	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJO35_14760	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJO35_14760	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJO35_14765	PWY-5057	L-valine degradation II
CJO35_14765	PWY-5076	L-leucine degradation III
CJO35_14765	PWY-5078	L-isoleucine degradation II
CJO35_14765	PWY-5101	L-isoleucine biosynthesis II
CJO35_14765	PWY-5103	L-isoleucine biosynthesis III
CJO35_14765	PWY-5104	L-isoleucine biosynthesis IV
CJO35_14765	PWY-5108	L-isoleucine biosynthesis V
CJO35_14765	PWY-7767	CJO35_14765
CJO35_14895	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_14895	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_14920	PWY-3781	aerobic respiration I (cytochrome c)
CJO35_14920	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJO35_14920	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJO35_14920	PWY-5690	TCA cycle II (plants and fungi)
CJO35_14920	PWY-6728	methylaspartate cycle
CJO35_14920	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_14920	PWY-7254	TCA cycle VII (acetate-producers)
CJO35_14920	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJO35_14925	PWY-3781	aerobic respiration I (cytochrome c)
CJO35_14925	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CJO35_14925	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJO35_14925	PWY-5690	TCA cycle II (plants and fungi)
CJO35_14925	PWY-6728	methylaspartate cycle
CJO35_14925	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_14925	PWY-7254	TCA cycle VII (acetate-producers)
CJO35_14925	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJO35_14940	PWY-2941	L-lysine biosynthesis II
CJO35_14940	PWY-2942	L-lysine biosynthesis III
CJO35_14940	PWY-5097	L-lysine biosynthesis VI
CJO35_14940	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
CJO35_14940	PWY-6559	spermidine biosynthesis II
CJO35_14940	PWY-6562	norspermidine biosynthesis
CJO35_14940	PWY-7153	grixazone biosynthesis
CJO35_14940	PWY-7977	CJO35_14940
CJO35_15095	PWY-6349	CDP-archaeol biosynthesis
CJO35_15100	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
CJO35_15105	PWY-4261	glycerol degradation I
CJO35_15225	PWY-6834	spermidine biosynthesis III
CJO35_15230	PWY-1042	glycolysis IV (plant cytosol)
CJO35_15230	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_15230	PWY-6901	superpathway of glucose and xylose degradation
CJO35_15230	PWY-7003	glycerol degradation to butanol
CJO35_15240	PWY-7851	CJO35_15240
CJO35_15270	PWY-1622	formaldehyde assimilation I (serine pathway)
CJO35_15270	PWY-5392	reductive TCA cycle II
CJO35_15270	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJO35_15270	PWY-5690	TCA cycle II (plants and fungi)
CJO35_15270	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_15270	PWY-6728	methylaspartate cycle
CJO35_15270	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_15270	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJO35_15270	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJO35_15275	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_15275	PWY-6549	L-glutamine biosynthesis III
CJO35_15275	PWY-6728	methylaspartate cycle
CJO35_15275	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_15275	PWY-7124	ethylene biosynthesis V (engineered)
CJO35_15275	PWY-7254	TCA cycle VII (acetate-producers)
CJO35_15275	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJO35_15300	PWY-1042	glycolysis IV (plant cytosol)
CJO35_15300	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJO35_15300	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_15300	PWY-5723	Rubisco shunt
CJO35_15300	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_15300	PWY-6886	1-butanol autotrophic biosynthesis
CJO35_15300	PWY-6901	superpathway of glucose and xylose degradation
CJO35_15300	PWY-7003	glycerol degradation to butanol
CJO35_15300	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJO35_15300	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJO35_15305	PWY-1042	glycolysis IV (plant cytosol)
CJO35_15305	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_15305	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_15305	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJO35_15310	PWY-4381	fatty acid biosynthesis initiation I
CJO35_15310	PWY-5743	3-hydroxypropanoate cycle
CJO35_15310	PWY-5744	glyoxylate assimilation
CJO35_15310	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_15310	PWY-6722	candicidin biosynthesis
CJO35_15315	PWY-4381	fatty acid biosynthesis initiation I
CJO35_15315	PWY-5743	3-hydroxypropanoate cycle
CJO35_15315	PWY-5744	glyoxylate assimilation
CJO35_15315	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_15315	PWY-6722	candicidin biosynthesis
CJO35_15345	PWY-7805	CJO35_15345
CJO35_15345	PWY-7807	CJO35_15345
CJO35_15355	PWY-1281	sulfoacetaldehyde degradation I
CJO35_15355	PWY-5482	pyruvate fermentation to acetate II
CJO35_15355	PWY-5485	pyruvate fermentation to acetate IV
CJO35_15355	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_15355	PWY-6637	sulfolactate degradation II
CJO35_15375	PWY-4983	L-citrulline-nitric oxide cycle
CJO35_15375	PWY-4984	urea cycle
CJO35_15375	PWY-5	canavanine biosynthesis
CJO35_15375	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_15375	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_15380	PWY-4983	L-citrulline-nitric oxide cycle
CJO35_15380	PWY-4984	urea cycle
CJO35_15380	PWY-5	canavanine biosynthesis
CJO35_15380	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CJO35_15380	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_15390	PWY-5482	pyruvate fermentation to acetate II
CJO35_15390	PWY-5485	pyruvate fermentation to acetate IV
CJO35_15390	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_15425	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CJO35_15425	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CJO35_15425	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CJO35_15460	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJO35_15570	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CJO35_15570	PWY-3461	L-tyrosine biosynthesis II
CJO35_15570	PWY-3462	L-phenylalanine biosynthesis II
CJO35_15570	PWY-6120	L-tyrosine biosynthesis III
CJO35_15570	PWY-6164	3-dehydroquinate biosynthesis I
CJO35_15570	PWY-6627	salinosporamide A biosynthesis
CJO35_15570	PWY-7626	bacilysin biosynthesis
CJO35_15570	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CJO35_15595	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_15595	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_15595	PWY-7953	CJO35_15595
CJO35_15680	PWY-6936	seleno-amino acid biosynthesis
CJO35_15915	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJO35_15915	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CJO35_15920	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJO35_15920	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJO35_15955	PWY-6502	oxidized GTP and dGTP detoxification
CJO35_15985	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJO35_15985	PWY-6153	autoinducer AI-2 biosynthesis I
CJO35_15985	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
CJO35_15995	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJO35_15995	PWY-5743	3-hydroxypropanoate cycle
CJO35_15995	PWY-5744	glyoxylate assimilation
CJO35_15995	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_15995	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_15995	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJO35_15995	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJO35_16035	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CJO35_16040	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CJO35_16045	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CJO35_16050	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CJO35_16055	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CJO35_16060	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CJO35_16060	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CJO35_16060	PWY-6406	salicylate biosynthesis I
CJO35_16065	PWY-5839	menaquinol-7 biosynthesis
CJO35_16065	PWY-5851	demethylmenaquinol-9 biosynthesis
CJO35_16065	PWY-5852	demethylmenaquinol-8 biosynthesis I
CJO35_16065	PWY-5853	demethylmenaquinol-6 biosynthesis I
CJO35_16065	PWY-5890	menaquinol-10 biosynthesis
CJO35_16065	PWY-5891	menaquinol-11 biosynthesis
CJO35_16065	PWY-5892	menaquinol-12 biosynthesis
CJO35_16065	PWY-5895	menaquinol-13 biosynthesis
CJO35_16075	PWY-5941	glycogen degradation II (eukaryotic)
CJO35_16075	PWY-6731	starch degradation III
CJO35_16075	PWY-6737	starch degradation V
CJO35_16075	PWY-7238	sucrose biosynthesis II
CJO35_16080	PWY-622	starch biosynthesis
CJO35_16090	PWY-622	starch biosynthesis
CJO35_16090	PWY-7902	CJO35_16090
CJO35_16095	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CJO35_16095	PWY-622	starch biosynthesis
CJO35_16095	PWY-7900	CJO35_16095
CJO35_16250	PWY-7942	CJO35_16250
CJO35_16285	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CJO35_16285	PWY-7494	choline degradation IV
CJO35_16305	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CJO35_16310	PWY-6698	oxalate degradation V
CJO35_16400	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CJO35_16440	PWY-723	alkylnitronates degradation
CJO35_16465	PWY-6717	(1,4)-&beta;-xylan degradation
CJO35_16465	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
CJO35_16510	PWY-3801	sucrose degradation II (sucrose synthase)
CJO35_16510	PWY-5054	sorbitol biosynthesis I
CJO35_16510	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CJO35_16510	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJO35_16510	PWY-5659	GDP-mannose biosynthesis
CJO35_16510	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_16510	PWY-621	sucrose degradation III (sucrose invertase)
CJO35_16510	PWY-622	starch biosynthesis
CJO35_16510	PWY-6981	chitin biosynthesis
CJO35_16510	PWY-6992	1,5-anhydrofructose degradation
CJO35_16510	PWY-7238	sucrose biosynthesis II
CJO35_16510	PWY-7347	sucrose biosynthesis III
CJO35_16510	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJO35_16580	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_16580	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_16580	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_16580	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_16610	PWY-5669	phosphatidylethanolamine biosynthesis I
CJO35_16620	PWY-5669	phosphatidylethanolamine biosynthesis I
CJO35_16715	PWY-5381	pyridine nucleotide cycling (plants)
CJO35_16860	PWY-101	photosynthesis light reactions
CJO35_16885	PWY-2941	L-lysine biosynthesis II
CJO35_16885	PWY-5097	L-lysine biosynthesis VI
CJO35_16945	PWY-702	L-methionine biosynthesis II
CJO35_16995	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJO35_16995	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJO35_17055	PWY-6832	2-aminoethylphosphonate degradation II
CJO35_17130	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CJO35_17210	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJO35_17210	PWY-5109	2-methylbutanoate biosynthesis
CJO35_17210	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJO35_17210	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJO35_17210	PWY-5177	glutaryl-CoA degradation
CJO35_17210	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_17210	PWY-6435	4-hydroxybenzoate biosynthesis V
CJO35_17210	PWY-6583	pyruvate fermentation to butanol I
CJO35_17210	PWY-6863	pyruvate fermentation to hexanol
CJO35_17210	PWY-6883	pyruvate fermentation to butanol II
CJO35_17210	PWY-6944	androstenedione degradation
CJO35_17210	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJO35_17210	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJO35_17210	PWY-7007	methyl ketone biosynthesis
CJO35_17210	PWY-7046	4-coumarate degradation (anaerobic)
CJO35_17210	PWY-7094	fatty acid salvage
CJO35_17210	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJO35_17210	PWY-735	jasmonic acid biosynthesis
CJO35_17210	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJO35_17210	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJO35_17210	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CJO35_17210	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CJO35_17210	PWY-7726	CJO35_17210
CJO35_17210	PWY-7778	CJO35_17210
CJO35_17210	PWY-7779	CJO35_17210
CJO35_17310	PWY-5392	reductive TCA cycle II
CJO35_17310	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJO35_17310	PWY-5690	TCA cycle II (plants and fungi)
CJO35_17310	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_17310	PWY-6728	methylaspartate cycle
CJO35_17310	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_17310	PWY-7254	TCA cycle VII (acetate-producers)
CJO35_17310	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJO35_17370	PWY-1081	homogalacturonan degradation
CJO35_17370	PWY-7246	pectin degradation II
CJO35_17370	PWY-7248	pectin degradation III
CJO35_17400	PWY-2941	L-lysine biosynthesis II
CJO35_17400	PWY-2942	L-lysine biosynthesis III
CJO35_17400	PWY-5097	L-lysine biosynthesis VI
CJO35_17450	PWY-6531	mannitol cycle
CJO35_17465	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
CJO35_17465	PWY-7248	pectin degradation III
CJO35_17640	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CJO35_17640	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CJO35_17720	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CJO35_17755	PWY-6698	oxalate degradation V
CJO35_18200	PWY-1042	glycolysis IV (plant cytosol)
CJO35_18200	PWY-1622	formaldehyde assimilation I (serine pathway)
CJO35_18200	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJO35_18200	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_18200	PWY-5723	Rubisco shunt
CJO35_18200	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_18200	PWY-6886	1-butanol autotrophic biosynthesis
CJO35_18200	PWY-6901	superpathway of glucose and xylose degradation
CJO35_18200	PWY-7003	glycerol degradation to butanol
CJO35_18200	PWY-7124	ethylene biosynthesis V (engineered)
CJO35_18200	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJO35_18205	PWY-1042	glycolysis IV (plant cytosol)
CJO35_18205	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJO35_18205	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_18205	PWY-5723	Rubisco shunt
CJO35_18205	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_18205	PWY-6886	1-butanol autotrophic biosynthesis
CJO35_18205	PWY-6901	superpathway of glucose and xylose degradation
CJO35_18205	PWY-7003	glycerol degradation to butanol
CJO35_18205	PWY-7124	ethylene biosynthesis V (engineered)
CJO35_18205	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CJO35_18210	PWY-1042	glycolysis IV (plant cytosol)
CJO35_18210	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_18210	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_18210	PWY-7003	glycerol degradation to butanol
CJO35_18215	PWY-1042	glycolysis IV (plant cytosol)
CJO35_18215	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_18215	PWY-6886	1-butanol autotrophic biosynthesis
CJO35_18215	PWY-6901	superpathway of glucose and xylose degradation
CJO35_18215	PWY-7003	glycerol degradation to butanol
CJO35_18220	PWY-1042	glycolysis IV (plant cytosol)
CJO35_18220	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_18220	PWY-6901	superpathway of glucose and xylose degradation
CJO35_18220	PWY-7003	glycerol degradation to butanol
CJO35_18400	PWY-2941	L-lysine biosynthesis II
CJO35_18400	PWY-2942	L-lysine biosynthesis III
CJO35_18400	PWY-5097	L-lysine biosynthesis VI
CJO35_18465	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CJO35_18465	PWY-5743	3-hydroxypropanoate cycle
CJO35_18465	PWY-5744	glyoxylate assimilation
CJO35_18465	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_18465	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_18465	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CJO35_18465	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CJO35_18600	PWY-7805	CJO35_18600
CJO35_18600	PWY-7807	CJO35_18600
CJO35_18875	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_18875	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_18875	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_18905	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CJO35_18905	PWY-7820	CJO35_18905
CJO35_18950	PWY-3801	sucrose degradation II (sucrose synthase)
CJO35_18950	PWY-6527	stachyose degradation
CJO35_18950	PWY-7238	sucrose biosynthesis II
CJO35_18950	PWY-7343	UDP-glucose biosynthesis
CJO35_18950	PWY-7817	CJO35_18950
CJO35_18965	PWY-7883	CJO35_18965
CJO35_18975	PWY-7815	CJO35_18975
CJO35_18975	PWY-7816	CJO35_18975
CJO35_18975	PWY-7819	CJO35_18975
CJO35_18980	PWY-7815	CJO35_18980
CJO35_18980	PWY-7816	CJO35_18980
CJO35_18980	PWY-7819	CJO35_18980
CJO35_18995	PWY-3861	mannitol degradation II
CJO35_18995	PWY-3881	mannitol biosynthesis
CJO35_18995	PWY-5659	GDP-mannose biosynthesis
CJO35_18995	PWY-6992	1,5-anhydrofructose degradation
CJO35_18995	PWY-7456	mannan degradation
CJO35_18995	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
CJO35_18995	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
CJO35_19005	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_19005	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_19005	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CJO35_19015	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJO35_19015	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CJO35_19015	PWY-7242	D-fructuronate degradation
CJO35_19015	PWY-7310	D-glucosaminate degradation
CJO35_19015	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CJO35_19030	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CJO35_19035	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CJO35_19035	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CJO35_19120	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJO35_19125	PWY-5101	L-isoleucine biosynthesis II
CJO35_19125	PWY-5103	L-isoleucine biosynthesis III
CJO35_19125	PWY-5104	L-isoleucine biosynthesis IV
CJO35_19125	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CJO35_19125	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CJO35_19125	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CJO35_19125	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJO35_19135	PWY-4041	&gamma;-glutamyl cycle
CJO35_19135	PWY-4061	glutathione-mediated detoxification I
CJO35_19135	PWY-5826	hypoglycin biosynthesis
CJO35_19135	PWY-6842	glutathione-mediated detoxification II
CJO35_19135	PWY-7112	4-hydroxy-2-nonenal detoxification
CJO35_19135	PWY-7559	glutathione degradation (DUG pathway - yeast)
CJO35_19190	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_19190	PWY-5723	Rubisco shunt
CJO35_19245	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CJO35_19245	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CJO35_19245	PWY-5989	stearate biosynthesis II (bacteria and plants)
CJO35_19245	PWY-5994	palmitate biosynthesis I (animals and fungi)
CJO35_19245	PWY-6113	superpathway of mycolate biosynthesis
CJO35_19245	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CJO35_19245	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CJO35_19245	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CJO35_19245	PWY-7663	gondoate biosynthesis (anaerobic)
CJO35_19245	PWY-7664	oleate biosynthesis IV (anaerobic)
CJO35_19245	PWY-7858	CJO35_19245
CJO35_19245	PWYG-321	mycolate biosynthesis
CJO35_19290	PWY-7805	CJO35_19290
CJO35_19290	PWY-7807	CJO35_19290
CJO35_19300	PWY-5451	acetone degradation I (to methylglyoxal)
CJO35_19300	PWY-6588	pyruvate fermentation to acetone
CJO35_19300	PWY-6876	isopropanol biosynthesis
CJO35_19300	PWY-7466	acetone degradation III (to propane-1,2-diol)
CJO35_19390	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
CJO35_19390	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CJO35_19390	PWY-6406	salicylate biosynthesis I
CJO35_19395	PWY-5901	2,3-dihydroxybenzoate biosynthesis
CJO35_19445	PWY-6823	molybdenum cofactor biosynthesis
CJO35_19480	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_19480	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_19480	PWY-7953	CJO35_19480
CJO35_19500	PWY-7980	CJO35_19500
CJO35_19510	PWY-7980	CJO35_19510
CJO35_19545	PWY-7183	pyrimidine nucleobases salvage I
CJO35_19550	PWY-1622	formaldehyde assimilation I (serine pathway)
CJO35_19550	PWY-181	photorespiration
CJO35_19550	PWY-2161	folate polyglutamylation
CJO35_19550	PWY-2201	folate transformations I
CJO35_19550	PWY-3661	glycine betaine degradation I
CJO35_19550	PWY-3661-1	glycine betaine degradation II (mammalian)
CJO35_19550	PWY-3841	folate transformations II
CJO35_19550	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_19645	PWY-7199	pyrimidine deoxyribonucleosides salvage
CJO35_19655	PWY-7980	CJO35_19655
CJO35_19660	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_19665	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CJO35_19665	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CJO35_19665	PWY-7953	CJO35_19665
CJO35_19670	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_19670	PWY-5723	Rubisco shunt
CJO35_19675	PWY-1042	glycolysis IV (plant cytosol)
CJO35_19675	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_19675	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_19675	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_19675	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJO35_19690	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CJO35_19690	PWY-7177	UTP and CTP dephosphorylation II
CJO35_19690	PWY-7185	UTP and CTP dephosphorylation I
CJO35_19710	PWY-1361	benzoyl-CoA degradation I (aerobic)
CJO35_19710	PWY-5109	2-methylbutanoate biosynthesis
CJO35_19710	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CJO35_19710	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CJO35_19710	PWY-5177	glutaryl-CoA degradation
CJO35_19710	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CJO35_19710	PWY-6435	4-hydroxybenzoate biosynthesis V
CJO35_19710	PWY-6583	pyruvate fermentation to butanol I
CJO35_19710	PWY-6863	pyruvate fermentation to hexanol
CJO35_19710	PWY-6883	pyruvate fermentation to butanol II
CJO35_19710	PWY-6944	androstenedione degradation
CJO35_19710	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CJO35_19710	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CJO35_19710	PWY-7007	methyl ketone biosynthesis
CJO35_19710	PWY-7046	4-coumarate degradation (anaerobic)
CJO35_19710	PWY-7094	fatty acid salvage
CJO35_19710	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CJO35_19710	PWY-735	jasmonic acid biosynthesis
CJO35_19710	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CJO35_19710	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CJO35_19710	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
CJO35_19710	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
CJO35_19710	PWY-7726	CJO35_19710
CJO35_19710	PWY-7778	CJO35_19710
CJO35_19710	PWY-7779	CJO35_19710
CJO35_19745	PWY-40	putrescine biosynthesis I
CJO35_19745	PWY-6305	putrescine biosynthesis IV
CJO35_19765	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_19765	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_19765	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_19765	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_19815	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CJO35_19815	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CJO35_19860	PWY-1281	sulfoacetaldehyde degradation I
CJO35_19860	PWY-5482	pyruvate fermentation to acetate II
CJO35_19860	PWY-5485	pyruvate fermentation to acetate IV
CJO35_19860	PWY-5497	purine nucleobases degradation II (anaerobic)
CJO35_19860	PWY-6637	sulfolactate degradation II
CJO35_19945	PWY-6910	hydroxymethylpyrimidine salvage
CJO35_19945	PWY-7356	thiamin salvage IV (yeast)
CJO35_19945	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJO35_20000	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_20000	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_20000	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_20000	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_20005	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CJO35_20005	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CJO35_20005	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CJO35_20005	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CJO35_20075	PWY-3781	aerobic respiration I (cytochrome c)
CJO35_20075	PWY-4521	arsenite oxidation I (respiratory)
CJO35_20075	PWY-6692	Fe(II) oxidation
CJO35_20075	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CJO35_20085	PWY-3821	galactose degradation III
CJO35_20085	PWY-6317	galactose degradation I (Leloir pathway)
CJO35_20085	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJO35_20085	PWY-6527	stachyose degradation
CJO35_20085	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJO35_20085	PWY-7344	UDP-D-galactose biosynthesis
CJO35_20115	PWY-4261	glycerol degradation I
CJO35_20130	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CJO35_20130	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CJO35_20130	PWY-6897	thiamin salvage II
CJO35_20130	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CJO35_20130	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CJO35_20130	PWY-7356	thiamin salvage IV (yeast)
CJO35_20130	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJO35_20135	PWY-6897	thiamin salvage II
CJO35_20135	PWY-7356	thiamin salvage IV (yeast)
CJO35_20135	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CJO35_20235	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CJO35_20235	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CJO35_20235	PWY-7242	D-fructuronate degradation
CJO35_20235	PWY-7310	D-glucosaminate degradation
CJO35_20235	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CJO35_20300	PWY-5057	L-valine degradation II
CJO35_20300	PWY-5076	L-leucine degradation III
CJO35_20300	PWY-5078	L-isoleucine degradation II
CJO35_20300	PWY-5101	L-isoleucine biosynthesis II
CJO35_20300	PWY-5103	L-isoleucine biosynthesis III
CJO35_20300	PWY-5104	L-isoleucine biosynthesis IV
CJO35_20300	PWY-5108	L-isoleucine biosynthesis V
CJO35_20300	PWY-7767	CJO35_20300
CJO35_20355	PWY-5747	2-methylcitrate cycle II
CJO35_20575	PWY-5392	reductive TCA cycle II
CJO35_20575	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CJO35_20575	PWY-5690	TCA cycle II (plants and fungi)
CJO35_20575	PWY-5913	TCA cycle VI (obligate autotrophs)
CJO35_20575	PWY-6728	methylaspartate cycle
CJO35_20575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_20575	PWY-7254	TCA cycle VII (acetate-producers)
CJO35_20575	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CJO35_20640	PWY-1001	cellulose biosynthesis
CJO35_20690	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_20695	PWY-4981	L-proline biosynthesis II (from arginine)
CJO35_20695	PWY-4984	urea cycle
CJO35_20695	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CJO35_20780	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CJO35_20780	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CJO35_20780	PWY-6936	seleno-amino acid biosynthesis
CJO35_20780	PWY-702	L-methionine biosynthesis II
CJO35_20795	PWY-3821	galactose degradation III
CJO35_20795	PWY-6317	galactose degradation I (Leloir pathway)
CJO35_20795	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJO35_20795	PWY-6527	stachyose degradation
CJO35_20795	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJO35_20795	PWY-7344	UDP-D-galactose biosynthesis
CJO35_20865	PWY-6899	base-degraded thiamin salvage
CJO35_20865	PWY-7356	thiamin salvage IV (yeast)
CJO35_20870	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_20875	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CJO35_20875	PWY-7118	chitin degradation to ethanol
CJO35_20875	PWY-7294	xylose degradation IV
CJO35_20875	PWY-7295	L-arabinose degradation IV
CJO35_20875	PWY-7854	CJO35_20875
CJO35_20975	PWY-7181	pyrimidine deoxyribonucleosides degradation
CJO35_20985	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CJO35_21050	PWY-1042	glycolysis IV (plant cytosol)
CJO35_21050	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CJO35_21050	PWY-5484	glycolysis II (from fructose 6-phosphate)
CJO35_21050	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CJO35_21050	PWY-7385	1,3-propanediol biosynthesis (engineered)
CJO35_21065	PWY-5940	streptomycin biosynthesis
CJO35_21065	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
CJO35_21065	PWY-7241	<I>myo</I>-inositol degradation II
CJO35_21090	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CJO35_21095	PWY-5642	2,4-dinitrotoluene degradation
CJO35_21135	PWY-6349	CDP-archaeol biosynthesis
CJO35_21160	PWY-5386	methylglyoxal degradation I
CJO35_21230	PWY-6807	xyloglucan degradation II (exoglucanase)
CJO35_21255	PWY-3821	galactose degradation III
CJO35_21255	PWY-6317	galactose degradation I (Leloir pathway)
CJO35_21255	PWY-6527	stachyose degradation
CJO35_21260	PWY-3821	galactose degradation III
CJO35_21260	PWY-6317	galactose degradation I (Leloir pathway)
CJO35_21260	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CJO35_21260	PWY-6527	stachyose degradation
CJO35_21260	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CJO35_21260	PWY-7344	UDP-D-galactose biosynthesis
CJO35_21265	PWY-6317	galactose degradation I (Leloir pathway)
CJO35_21265	PWY-6527	stachyose degradation
CJO35_21280	PWY-4261	glycerol degradation I
CJO35_21280	PWY-5530	sorbitol biosynthesis II
CJO35_21295	PWY-3162	L-tryptophan degradation V (side chain pathway)
CJO35_21295	PWY-5057	L-valine degradation II
CJO35_21295	PWY-5076	L-leucine degradation III
CJO35_21295	PWY-5078	L-isoleucine degradation II
CJO35_21295	PWY-5079	L-phenylalanine degradation III
CJO35_21295	PWY-5082	L-methionine degradation III
CJO35_21295	PWY-5480	pyruvate fermentation to ethanol I
CJO35_21295	PWY-5486	pyruvate fermentation to ethanol II
CJO35_21295	PWY-5751	phenylethanol biosynthesis
CJO35_21295	PWY-6313	serotonin degradation
CJO35_21295	PWY-6333	acetaldehyde biosynthesis I
CJO35_21295	PWY-6342	noradrenaline and adrenaline degradation
CJO35_21295	PWY-6587	pyruvate fermentation to ethanol III
CJO35_21295	PWY-6802	salidroside biosynthesis
CJO35_21295	PWY-6871	3-methylbutanol biosynthesis
CJO35_21295	PWY-7013	L-1,2-propanediol degradation
CJO35_21295	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CJO35_21295	PWY-7118	chitin degradation to ethanol
CJO35_21295	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CJO35_21455	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CJO35_21490	PWY-6906	chitin derivatives degradation
CJO35_21490	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CJO35_21490	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CJO35_21495	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CJO35_21495	PWY-6855	chitin degradation I (archaea)
CJO35_21495	PWY-6906	chitin derivatives degradation
CJO35_21520	PWY-7805	CJO35_21520
CJO35_21520	PWY-7807	CJO35_21520