CJO35_00005 SM00382 ATPases associated with a variety of cellular activities CJO35_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CJO35_00010 SM00480 DNA polymerase III beta subunit CJO35_00030 SM00387 Histidine kinase-like ATPases CJO35_00030 SM00433 TopoisomeraseII CJO35_00035 SM00434 DNA Topoisomerase IV CJO35_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_00070 SM01240 CJO35_00070 CJO35_00075 SM00936 Penicillin-binding protein 5, C-terminal domain CJO35_00130 SM00257 Lysin motif CJO35_00130 SM00636 CJO35_00130 CJO35_00150 SM00382 ATPases associated with a variety of cellular activities CJO35_00160 SM00493 CJO35_00160 CJO35_00255 SM00465 GIY-YIG type nucleases (URI domain) CJO35_00265 SM00966 SpoVT / AbrB like domain CJO35_00280 SM01208 CJO35_00280 CJO35_00285 SM00493 CJO35_00285 CJO35_00290 SM00650 Ribosomal RNA adenine dimethylases CJO35_00335 SM01400 CJO35_00335 CJO35_00355 SM00487 DEAD-like helicases superfamily CJO35_00355 SM00490 helicase superfamily c-terminal domain CJO35_00355 SM00982 CJO35_00355 CJO35_00355 SM01058 CarD-like/TRCF domain CJO35_00360 SM00966 SpoVT / AbrB like domain CJO35_00375 SM00363 S4 RNA-binding domain CJO35_00395 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_00410 SM00331 Sigma factor PP2C-like phosphatases CJO35_00410 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CJO35_00420 SM00220 Serine/Threonine protein kinases, catalytic domain CJO35_00425 SM00977 TilS substrate C-terminal domain CJO35_00435 SM00382 ATPases associated with a variety of cellular activities CJO35_00485 SM00905 Dihydroneopterin aldolase CJO35_00495 SM00530 Helix-turn-helix XRE-family like proteins CJO35_00600 SM00382 ATPases associated with a variety of cellular activities CJO35_00600 SM01086 C-terminal, D2-small domain, of ClpB protein CJO35_00605 SM00382 ATPases associated with a variety of cellular activities CJO35_00615 SM00670 Large family of predicted nucleotide-binding domains CJO35_00640 SM00840 CJO35_00640 CJO35_00645 SM00535 Ribonuclease III family CJO35_00650 SM00967 RNA 2'-O ribose methyltransferase substrate binding CJO35_00675 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CJO35_00675 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CJO35_00680 SM00649 Ribosomal protein L11/L12 CJO35_00710 SM00663 RNA polymerase I subunit A N-terminus CJO35_00730 SM00838 Elongation factor G C-terminus CJO35_00730 SM00889 Elongation factor G, domain IV CJO35_00740 SM01403 CJO35_00740 CJO35_00760 SM01382 CJO35_00760 CJO35_00760 SM01383 CJO35_00760 CJO35_00775 SM00322 K homology RNA-binding domain CJO35_00795 SM01374 CJO35_00795 CJO35_00800 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CJO35_00865 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_00885 SM00662 RNA polymerases D CJO35_00895 SM00382 ATPases associated with a variety of cellular activities CJO35_00900 SM00382 ATPases associated with a variety of cellular activities CJO35_00935 SM00646 CJO35_00935 CJO35_00950 SM01251 CJO35_00950 CJO35_01115 SM00382 ATPases associated with a variety of cellular activities CJO35_01120 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_01125 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CJO35_01140 SM00382 ATPases associated with a variety of cellular activities CJO35_01190 SM00448 cheY-homologous receiver domain CJO35_01195 SM00091 PAS domain CJO35_01195 SM00387 Histidine kinase-like ATPases CJO35_01340 SM00342 helix_turn_helix, arabinose operon control protein CJO35_01350 SM00530 Helix-turn-helix XRE-family like proteins CJO35_01355 SM00421 helix_turn_helix, Lux Regulon CJO35_01365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_01365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_01415 SM00422 helix_turn_helix, mercury resistance CJO35_01450 SM00387 Histidine kinase-like ATPases CJO35_01455 SM00448 cheY-homologous receiver domain CJO35_01495 SM01130 CJO35_01495 CJO35_01510 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CJO35_01515 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_01515 SM00895 CJO35_01515 CJO35_01520 SM00858 CJO35_01520 CJO35_01525 SM00448 cheY-homologous receiver domain CJO35_01525 SM00862 Transcriptional regulatory protein, C terminal CJO35_01530 SM00387 Histidine kinase-like ATPases CJO35_01530 SM00388 His Kinase A (phosphoacceptor) domain CJO35_01535 SM00382 ATPases associated with a variety of cellular activities CJO35_01565 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_01575 SM00093 SERine Proteinase INhibitors CJO35_01590 SM00422 helix_turn_helix, mercury resistance CJO35_01630 SM00382 ATPases associated with a variety of cellular activities CJO35_01645 SM00448 cheY-homologous receiver domain CJO35_01645 SM00862 Transcriptional regulatory protein, C terminal CJO35_01650 SM00387 Histidine kinase-like ATPases CJO35_01650 SM00388 His Kinase A (phosphoacceptor) domain CJO35_01745 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_01745 SM00866 CJO35_01745 CJO35_01755 SM00060 Fibronectin type 3 domain CJO35_01755 SM00495 Chitin-binding domain type 3 CJO35_01755 SM00636 CJO35_01755 CJO35_01760 SM00636 CJO35_01760 CJO35_01785 SM00450 Rhodanese Homology Domain CJO35_01810 SM00382 ATPases associated with a variety of cellular activities CJO35_01885 SM00422 helix_turn_helix, mercury resistance CJO35_01965 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_01985 SM00062 Bacterial periplasmic substrate-binding proteins CJO35_01995 SM00382 ATPases associated with a variety of cellular activities CJO35_02015 SM00219 Tyrosine kinase, catalytic domain CJO35_02045 SM00382 ATPases associated with a variety of cellular activities CJO35_02060 SM00823 Phosphopantetheine attachment site CJO35_02065 SM00823 Phosphopantetheine attachment site CJO35_02070 SM00823 Phosphopantetheine attachment site CJO35_02085 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_02115 SM00382 ATPases associated with a variety of cellular activities CJO35_02135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_02135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_02140 SM00382 ATPases associated with a variety of cellular activities CJO35_02150 SM00062 Bacterial periplasmic substrate-binding proteins CJO35_02155 SM00382 ATPases associated with a variety of cellular activities CJO35_02255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_02255 SM00387 Histidine kinase-like ATPases CJO35_02260 SM00342 helix_turn_helix, arabinose operon control protein CJO35_02260 SM00448 cheY-homologous receiver domain CJO35_02270 SM00382 ATPases associated with a variety of cellular activities CJO35_02285 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_02310 SM00710 Parallel beta-helix repeats CJO35_02340 SM00382 ATPases associated with a variety of cellular activities CJO35_02350 SM00448 cheY-homologous receiver domain CJO35_02350 SM00862 Transcriptional regulatory protein, C terminal CJO35_02355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_02355 SM00387 Histidine kinase-like ATPases CJO35_02355 SM00388 His Kinase A (phosphoacceptor) domain CJO35_02360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_02360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_02380 SM00382 ATPases associated with a variety of cellular activities CJO35_02415 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CJO35_02420 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_02460 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_02470 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CJO35_02490 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_02490 SM00895 CJO35_02490 CJO35_02540 SM00861 Transketolase, pyrimidine binding domain CJO35_02565 SM00796 Allophanate hydrolase subunit 1 CJO35_02570 SM00797 Allophanate hydrolase subunit 2 CJO35_02575 SM00346 helix_turn_helix isocitrate lyase regulation CJO35_02645 SM00344 helix_turn_helix ASNC type CJO35_02650 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CJO35_02650 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CJO35_02650 SM00493 CJO35_02650 CJO35_02735 SM00382 ATPases associated with a variety of cellular activities CJO35_02785 SM00487 DEAD-like helicases superfamily CJO35_02785 SM00490 helicase superfamily c-terminal domain CJO35_02810 SM01005 Alanine racemase, C-terminal domain CJO35_02835 SM00387 Histidine kinase-like ATPases CJO35_02840 SM00331 Sigma factor PP2C-like phosphatases CJO35_02850 SM00387 Histidine kinase-like ATPases CJO35_02860 SM00331 Sigma factor PP2C-like phosphatases CJO35_02865 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_02865 SM00732 Likely ribonuclease with RNase H fold. CJO35_02885 SM00731 SprT homologues. CJO35_02935 SM00530 Helix-turn-helix XRE-family like proteins CJO35_02945 SM00357 Cold shock protein domain CJO35_02950 SM00829 Enoylreductase CJO35_02965 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_03055 SM00387 Histidine kinase-like ATPases CJO35_03055 SM00388 His Kinase A (phosphoacceptor) domain CJO35_03055 SM00448 cheY-homologous receiver domain CJO35_03060 SM00448 cheY-homologous receiver domain CJO35_03060 SM00862 Transcriptional regulatory protein, C terminal CJO35_03140 SM00382 ATPases associated with a variety of cellular activities CJO35_03150 SM00881 CoA binding domain CJO35_03175 SM00883 Chaperonin 10 Kd subunit CJO35_03310 SM00530 Helix-turn-helix XRE-family like proteins CJO35_03335 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_03350 SM00642 Alpha-amylase domain CJO35_03355 SM00354 helix_turn _helix lactose operon repressor CJO35_03360 SM00642 Alpha-amylase domain CJO35_03390 SM00642 Alpha-amylase domain CJO35_03400 SM00363 S4 RNA-binding domain CJO35_03405 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_03460 SM00342 helix_turn_helix, arabinose operon control protein CJO35_03460 SM00871 Bacterial transcription activator, effector binding domain CJO35_03495 SM00460 Transglutaminase/protease-like homologues CJO35_03535 SM01001 AIR carboxylase CJO35_03545 SM00998 Adenylosuccinate lyase C-terminus CJO35_03560 SM01211 CJO35_03560 CJO35_03585 SM00798 AICARFT/IMPCHase bienzyme CJO35_03585 SM00851 MGS-like domain CJO35_03590 SM01209 CJO35_03590 CJO35_03590 SM01210 CJO35_03590 CJO35_03650 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CJO35_03650 SM00292 breast cancer carboxy-terminal domain CJO35_03650 SM00532 Ligase N family CJO35_03725 SM00845 GatB domain CJO35_03770 SM00046 Diacylglycerol kinase catalytic domain (presumed) CJO35_03805 SM01061 CAT RNA binding domain CJO35_03810 SM00028 Tetratricopeptide repeats CJO35_03835 SM00530 Helix-turn-helix XRE-family like proteins CJO35_03850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_03860 SM00382 ATPases associated with a variety of cellular activities CJO35_03880 SM00833 Cobalamin synthesis protein cobW C-terminal domain CJO35_03905 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_03905 SM00876 Biotin and Thiamin Synthesis associated domain CJO35_03920 SM00422 helix_turn_helix, mercury resistance CJO35_03930 SM00382 ATPases associated with a variety of cellular activities CJO35_03935 SM00487 DEAD-like helicases superfamily CJO35_03935 SM00490 helicase superfamily c-terminal domain CJO35_03940 SM00829 Enoylreductase CJO35_03970 SM00849 Metallo-beta-lactamase superfamily CJO35_03975 SM00849 Metallo-beta-lactamase superfamily CJO35_03980 SM00631 CJO35_03980 CJO35_03995 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CJO35_04045 SM00642 Alpha-amylase domain CJO35_04050 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_04050 SM00866 CJO35_04050 CJO35_04100 SM00028 Tetratricopeptide repeats CJO35_04115 SM00984 UDP binding domain CJO35_04155 SM00226 Low molecular weight phosphatase family CJO35_04220 SM00478 endonuclease III CJO35_04275 SM01061 CAT RNA binding domain CJO35_04310 SM00861 Transketolase, pyrimidine binding domain CJO35_04325 SM00382 ATPases associated with a variety of cellular activities CJO35_04385 SM00342 helix_turn_helix, arabinose operon control protein CJO35_04500 SM00478 endonuclease III CJO35_04500 SM00525 CJO35_04500 CJO35_04530 SM00382 ATPases associated with a variety of cellular activities CJO35_04535 SM00382 ATPases associated with a variety of cellular activities CJO35_04540 SM00382 ATPases associated with a variety of cellular activities CJO35_04735 SM00028 Tetratricopeptide repeats CJO35_04760 SM00382 ATPases associated with a variety of cellular activities CJO35_04765 SM00062 Bacterial periplasmic substrate-binding proteins CJO35_04785 SM00530 Helix-turn-helix XRE-family like proteins CJO35_04795 SM00382 ATPases associated with a variety of cellular activities CJO35_04830 SM00567 E-Z type HEAT repeats CJO35_04860 SM00763 PrkA AAA domain CJO35_04905 SM00382 ATPases associated with a variety of cellular activities CJO35_04915 SM00357 Cold shock protein domain CJO35_04920 SM00382 ATPases associated with a variety of cellular activities CJO35_04920 SM00930 CJO35_04920 CJO35_04965 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CJO35_04965 SM00091 PAS domain CJO35_04965 SM00387 Histidine kinase-like ATPases CJO35_04965 SM00388 His Kinase A (phosphoacceptor) domain CJO35_04970 SM00318 Staphylococcal nuclease homologues CJO35_04990 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_05005 SM00382 ATPases associated with a variety of cellular activities CJO35_05025 SM00829 Enoylreductase CJO35_05060 SM00530 Helix-turn-helix XRE-family like proteins CJO35_05065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CJO35_05065 SM00387 Histidine kinase-like ATPases CJO35_05070 SM00421 helix_turn_helix, Lux Regulon CJO35_05070 SM00448 cheY-homologous receiver domain CJO35_05105 SM00257 Lysin motif CJO35_05140 SM00342 helix_turn_helix, arabinose operon control protein CJO35_05140 SM00871 Bacterial transcription activator, effector binding domain CJO35_05145 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_05180 SM00563 Phosphate acyltransferases CJO35_05200 SM01091 Transporter associated domain CJO35_05205 SM00422 helix_turn_helix, mercury resistance CJO35_05210 SM01091 Transporter associated domain CJO35_05225 SM00646 CJO35_05225 CJO35_05310 SM00382 ATPases associated with a variety of cellular activities CJO35_05315 SM00382 ATPases associated with a variety of cellular activities CJO35_05335 SM00382 ATPases associated with a variety of cellular activities CJO35_05380 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_05405 SM00028 Tetratricopeptide repeats CJO35_05420 SM00382 ATPases associated with a variety of cellular activities CJO35_05440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_05480 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_05515 SM00382 ATPases associated with a variety of cellular activities CJO35_05600 SM00849 Metallo-beta-lactamase superfamily CJO35_05620 SM00530 Helix-turn-helix XRE-family like proteins CJO35_05665 SM00855 Phosphoglycerate mutase family CJO35_05670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_05685 SM00914 CJO35_05685 CJO35_05805 SM00354 helix_turn _helix lactose operon repressor CJO35_05865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_05865 SM00387 Histidine kinase-like ATPases CJO35_05865 SM00388 His Kinase A (phosphoacceptor) domain CJO35_05870 SM00448 cheY-homologous receiver domain CJO35_05870 SM00862 Transcriptional regulatory protein, C terminal CJO35_05990 SM00938 Nitrogen regulatory protein P-II CJO35_06000 SM00342 helix_turn_helix, arabinose operon control protein CJO35_06010 SM00354 helix_turn _helix lactose operon repressor CJO35_06040 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_06060 SM01006 Siderophore biosynthesis protein domain CJO35_06085 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_06090 SM01018 B12 binding domain CJO35_06105 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_06135 SM01240 CJO35_06135 CJO35_06165 SM00859 Semialdehyde dehydrogenase, NAD binding domain CJO35_06185 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CJO35_06190 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJO35_06245 SM00825 Beta-ketoacyl synthase CJO35_06255 SM00382 ATPases associated with a variety of cellular activities CJO35_06260 SM00382 ATPases associated with a variety of cellular activities CJO35_06325 SM00382 ATPases associated with a variety of cellular activities CJO35_06330 SM00382 ATPases associated with a variety of cellular activities CJO35_06370 SM00448 cheY-homologous receiver domain CJO35_06375 SM00091 PAS domain CJO35_06375 SM00387 Histidine kinase-like ATPases CJO35_06410 SM01118 CJO35_06410 CJO35_06420 SM00954 Region found in RelA / SpoT proteins CJO35_06615 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_06650 SM01266 CJO35_06650 CJO35_06695 SM00257 Lysin motif CJO35_06740 SM00530 Helix-turn-helix XRE-family like proteins CJO35_06745 SM00530 Helix-turn-helix XRE-family like proteins CJO35_06760 SM00382 ATPases associated with a variety of cellular activities CJO35_06855 SM00257 Lysin motif CJO35_06910 SM00644 CJO35_06910 CJO35_06915 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_06915 SM00895 CJO35_06915 CJO35_06920 SM00829 Enoylreductase CJO35_06975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_06975 SM00387 Histidine kinase-like ATPases CJO35_06980 SM00342 helix_turn_helix, arabinose operon control protein CJO35_06980 SM00448 cheY-homologous receiver domain CJO35_07005 SM00342 helix_turn_helix, arabinose operon control protein CJO35_07095 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_07120 SM00382 ATPases associated with a variety of cellular activities CJO35_07135 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CJO35_07145 SM00382 ATPases associated with a variety of cellular activities CJO35_07205 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CJO35_07220 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_07240 SM00855 Phosphoglycerate mutase family CJO35_07270 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_07270 SM00924 MgtE intracellular N domain CJO35_07295 SM00530 Helix-turn-helix XRE-family like proteins CJO35_07300 SM00530 Helix-turn-helix XRE-family like proteins CJO35_07315 SM01040 BRO family, N-terminal domain CJO35_07320 SM00530 Helix-turn-helix XRE-family like proteins CJO35_07350 SM00382 ATPases associated with a variety of cellular activities CJO35_07525 SM00060 Fibronectin type 3 domain CJO35_07570 SM00257 Lysin motif CJO35_07570 SM00641 Glycosyl hydrolases family 25 CJO35_07590 SM00422 helix_turn_helix, mercury resistance CJO35_07605 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_07615 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CJO35_07620 SM00267 diguanylate cyclase CJO35_07685 SM00091 PAS domain CJO35_07685 SM00387 Histidine kinase-like ATPases CJO35_07685 SM00388 His Kinase A (phosphoacceptor) domain CJO35_07720 SM01007 Class II Aldolase and Adducin N-terminal domain CJO35_07745 SM00387 Histidine kinase-like ATPases CJO35_07745 SM00388 His Kinase A (phosphoacceptor) domain CJO35_07750 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_07765 SM00382 ATPases associated with a variety of cellular activities CJO35_07765 SM01086 C-terminal, D2-small domain, of ClpB protein CJO35_07805 SM00530 Helix-turn-helix XRE-family like proteins CJO35_07875 SM00354 helix_turn _helix lactose operon repressor CJO35_07880 SM01061 CAT RNA binding domain CJO35_07915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_07915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_07940 SM00091 PAS domain CJO35_07940 SM00387 Histidine kinase-like ATPases CJO35_07940 SM00388 His Kinase A (phosphoacceptor) domain CJO35_07960 SM00260 Two component signalling adaptor domain CJO35_07960 SM00448 cheY-homologous receiver domain CJO35_07975 SM00257 Lysin motif CJO35_07995 SM00052 Putative diguanylate phosphodiesterase CJO35_08095 SM00852 Probable molybdopterin binding domain CJO35_08120 SM00382 ATPases associated with a variety of cellular activities CJO35_08125 SM00382 ATPases associated with a variety of cellular activities CJO35_08140 SM00382 ATPases associated with a variety of cellular activities CJO35_08145 SM01066 Carbohydrate binding domain CJO35_08150 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_08150 SM01134 CJO35_08150 CJO35_08180 SM00382 ATPases associated with a variety of cellular activities CJO35_08205 SM00966 SpoVT / AbrB like domain CJO35_08210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CJO35_08210 SM00091 PAS domain CJO35_08210 SM00387 Histidine kinase-like ATPases CJO35_08210 SM00388 His Kinase A (phosphoacceptor) domain CJO35_08225 SM00849 Metallo-beta-lactamase superfamily CJO35_08265 SM00861 Transketolase, pyrimidine binding domain CJO35_08345 SM00838 Elongation factor G C-terminus CJO35_08355 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_08375 SM00670 Large family of predicted nucleotide-binding domains CJO35_08400 SM00878 Biotin carboxylase C-terminal domain CJO35_08445 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_08490 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_08545 SM00740 CJO35_08545 CJO35_08550 SM00740 CJO35_08550 CJO35_08605 SM00842 Cell division protein FtsA CJO35_08610 SM00864 Tubulin/FtsZ family, GTPase domain CJO35_08610 SM00865 Tubulin/FtsZ family, C-terminal domain CJO35_08640 SM00382 ATPases associated with a variety of cellular activities CJO35_08675 SM00363 S4 RNA-binding domain CJO35_08700 SM00363 S4 RNA-binding domain CJO35_08725 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CJO35_08730 SM00851 MGS-like domain CJO35_08730 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJO35_08745 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CJO35_08800 SM00831 Cation transporter/ATPase, N-terminus CJO35_08815 SM00072 Guanylate kinase homologues. CJO35_08820 SM01409 CJO35_08820 CJO35_08830 SM00487 DEAD-like helicases superfamily CJO35_08830 SM00490 helicase superfamily c-terminal domain CJO35_08855 SM00331 Sigma factor PP2C-like phosphatases CJO35_08855 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CJO35_08860 SM00220 Serine/Threonine protein kinases, catalytic domain CJO35_08860 SM00740 CJO35_08860 CJO35_08875 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CJO35_08895 SM01120 CJO35_08895 CJO35_08895 SM01121 CJO35_08895 CJO35_08910 SM00487 DEAD-like helicases superfamily CJO35_08910 SM00490 helicase superfamily c-terminal domain CJO35_08925 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CJO35_08930 SM00822 CJO35_08930 CJO35_08940 SM00358 Double-stranded RNA binding motif CJO35_08940 SM00535 Ribonuclease III family CJO35_08945 SM00968 SMC proteins Flexible Hinge Domain CJO35_08950 SM00382 ATPases associated with a variety of cellular activities CJO35_08950 SM00962 SRP54-type protein, GTPase domain CJO35_08950 SM00963 SRP54-type protein, helical bundle domain CJO35_08960 SM00382 ATPases associated with a variety of cellular activities CJO35_08960 SM00962 SRP54-type protein, GTPase domain CJO35_08960 SM00963 SRP54-type protein, helical bundle domain CJO35_09020 SM00881 CoA binding domain CJO35_09030 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CJO35_09030 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CJO35_09030 SM00493 CJO35_09030 CJO35_09050 SM00382 ATPases associated with a variety of cellular activities CJO35_09050 SM01086 C-terminal, D2-small domain, of ClpB protein CJO35_09090 SM00382 ATPases associated with a variety of cellular activities CJO35_09140 SM00448 cheY-homologous receiver domain CJO35_09175 SM00382 ATPases associated with a variety of cellular activities CJO35_09175 SM00962 SRP54-type protein, GTPase domain CJO35_09185 SM00448 cheY-homologous receiver domain CJO35_09190 SM00073 Histidine Phosphotransfer domain CJO35_09190 SM00260 Two component signalling adaptor domain CJO35_09190 SM00387 Histidine kinase-like ATPases CJO35_09190 SM01231 CJO35_09190 CJO35_09195 SM00260 Two component signalling adaptor domain CJO35_09255 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_09265 SM00479 CJO35_09265 CJO35_09265 SM00481 DNA polymerase alpha chain like domain CJO35_09275 SM01067 Cellulose binding domain CJO35_09300 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_09300 SM00322 K homology RNA-binding domain CJO35_09335 SM00904 Riboflavin kinase CJO35_09340 SM01387 CJO35_09340 CJO35_09345 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_09345 SM00322 K homology RNA-binding domain CJO35_09375 SM00859 Semialdehyde dehydrogenase, NAD binding domain CJO35_09385 SM01130 CJO35_09385 CJO35_09390 SM00849 Metallo-beta-lactamase superfamily CJO35_09405 SM00382 ATPases associated with a variety of cellular activities CJO35_09405 SM00843 CJO35_09405 CJO35_09410 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_09410 SM00866 CJO35_09410 CJO35_09445 SM00530 Helix-turn-helix XRE-family like proteins CJO35_09455 SM00852 Probable molybdopterin binding domain CJO35_09460 SM00382 ATPases associated with a variety of cellular activities CJO35_09465 SM00322 K homology RNA-binding domain CJO35_09465 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_09485 SM00829 Enoylreductase CJO35_09495 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_09510 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CJO35_09510 SM00534 ATPase domain of DNA mismatch repair MUTS family CJO35_09515 SM00853 MutL C terminal dimerisation domain CJO35_09515 SM01340 CJO35_09515 CJO35_09545 SM00833 Cobalamin synthesis protein cobW C-terminal domain CJO35_09650 SM00257 Lysin motif CJO35_09650 SM00636 CJO35_09650 CJO35_09740 SM00849 Metallo-beta-lactamase superfamily CJO35_09755 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_09755 SM00895 CJO35_09755 CJO35_09765 SM00646 CJO35_09765 CJO35_09850 SM00382 ATPases associated with a variety of cellular activities CJO35_09865 SM00422 helix_turn_helix, mercury resistance CJO35_09870 SM01230 CJO35_09870 CJO35_10015 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_10030 SM00903 Flavin reductase like domain CJO35_10065 SM00257 Lysin motif CJO35_10070 SM00857 Resolvase, N terminal domain CJO35_10080 SM00861 Transketolase, pyrimidine binding domain CJO35_10105 SM00448 cheY-homologous receiver domain CJO35_10190 SM01207 CJO35_10190 CJO35_10195 SM00881 CoA binding domain CJO35_10200 SM00387 Histidine kinase-like ATPases CJO35_10200 SM00433 TopoisomeraseII CJO35_10205 SM00434 DNA Topoisomerase IV CJO35_10210 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_10220 SM01007 Class II Aldolase and Adducin N-terminal domain CJO35_10270 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CJO35_10285 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_10300 SM00100 Cyclic nucleotide-monophosphate binding domain CJO35_10300 SM00419 helix_turn_helix, cAMP Regulatory protein CJO35_10315 SM00100 Cyclic nucleotide-monophosphate binding domain CJO35_10315 SM00419 helix_turn_helix, cAMP Regulatory protein CJO35_10335 SM01067 Cellulose binding domain CJO35_10370 SM00710 Parallel beta-helix repeats CJO35_10370 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CJO35_10385 SM00422 helix_turn_helix, mercury resistance CJO35_10465 SM00382 ATPases associated with a variety of cellular activities CJO35_10470 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_10505 SM00354 helix_turn _helix lactose operon repressor CJO35_10510 SM00226 Low molecular weight phosphatase family CJO35_10520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CJO35_10620 SM00878 Biotin carboxylase C-terminal domain CJO35_10650 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CJO35_10690 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CJO35_10745 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_10745 SM00529 Helix-turn-helix diphteria tox regulatory element CJO35_10750 SM00382 ATPases associated with a variety of cellular activities CJO35_10755 SM00382 ATPases associated with a variety of cellular activities CJO35_10765 SM00822 CJO35_10765 CJO35_10785 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CJO35_10790 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_10830 SM00382 ATPases associated with a variety of cellular activities CJO35_10835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_10835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_10835 SM00319 Homologues of the ligand binding domain of Tar CJO35_10860 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_10920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CJO35_10925 SM00849 Metallo-beta-lactamase superfamily CJO35_10985 SM00257 Lysin motif CJO35_10990 SM00341 Helicase and RNase D C-terminal CJO35_10990 SM00487 DEAD-like helicases superfamily CJO35_10990 SM00490 helicase superfamily c-terminal domain CJO35_10990 SM00956 CJO35_10990 CJO35_11035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CJO35_11035 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJO35_11100 SM00860 SMI1 / KNR4 family CJO35_11245 SM00861 Transketolase, pyrimidine binding domain CJO35_11250 SM00327 von Willebrand factor (vWF) type A domain CJO35_11255 SM00382 ATPases associated with a variety of cellular activities CJO35_11265 SM00257 Lysin motif CJO35_11345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_11345 SM00245 tail specific protease CJO35_11390 SM00014 Acid phosphatase homologues CJO35_11435 SM00882 Coenzyme A transferase CJO35_11440 SM00882 Coenzyme A transferase CJO35_11475 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_11485 SM00267 diguanylate cyclase CJO35_11535 SM00382 ATPases associated with a variety of cellular activities CJO35_11580 SM00567 E-Z type HEAT repeats CJO35_11580 SM00932 Scaffold protein Nfu/NifU N terminal CJO35_11585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_11615 SM00357 Cold shock protein domain CJO35_11655 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CJO35_11655 SM00475 5'-3' exonuclease CJO35_11710 SM00491 CJO35_11710 CJO35_11725 SM00981 CJO35_11725 CJO35_11755 SM00487 DEAD-like helicases superfamily CJO35_11755 SM00490 helicase superfamily c-terminal domain CJO35_11805 SM00060 Fibronectin type 3 domain CJO35_11815 SM00478 endonuclease III CJO35_11815 SM00525 CJO35_11815 CJO35_11845 SM00479 CJO35_11845 CJO35_11845 SM00487 DEAD-like helicases superfamily CJO35_11845 SM00491 CJO35_11845 CJO35_11890 SM00851 MGS-like domain CJO35_11940 SM00914 CJO35_11940 CJO35_11945 SM00028 Tetratricopeptide repeats CJO35_12010 SM00138 Methyltransferase, chemotaxis proteins CJO35_12015 SM00562 CJO35_12015 CJO35_12045 SM00411 bacterial (prokaryotic) histone like domain CJO35_12100 SM01240 CJO35_12100 CJO35_12105 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_12135 SM00870 CJO35_12135 CJO35_12145 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO35_12165 SM00257 Lysin motif CJO35_12175 SM00487 DEAD-like helicases superfamily CJO35_12175 SM00490 helicase superfamily c-terminal domain CJO35_12200 SM00257 Lysin motif CJO35_12230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_12230 SM00387 Histidine kinase-like ATPases CJO35_12230 SM00388 His Kinase A (phosphoacceptor) domain CJO35_12235 SM00448 cheY-homologous receiver domain CJO35_12235 SM00862 Transcriptional regulatory protein, C terminal CJO35_12240 SM00091 PAS domain CJO35_12240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_12240 SM00387 Histidine kinase-like ATPases CJO35_12240 SM00388 His Kinase A (phosphoacceptor) domain CJO35_12245 SM00448 cheY-homologous receiver domain CJO35_12245 SM00862 Transcriptional regulatory protein, C terminal CJO35_12265 SM00363 S4 RNA-binding domain CJO35_12280 SM00936 Penicillin-binding protein 5, C-terminal domain CJO35_12355 SM00028 Tetratricopeptide repeats CJO35_12425 SM00387 Histidine kinase-like ATPases CJO35_12435 SM00936 Penicillin-binding protein 5, C-terminal domain CJO35_12590 SM00382 ATPases associated with a variety of cellular activities CJO35_12595 SM00382 ATPases associated with a variety of cellular activities CJO35_12650 SM00382 ATPases associated with a variety of cellular activities CJO35_12685 SM00849 Metallo-beta-lactamase superfamily CJO35_12740 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_12740 SM00866 CJO35_12740 CJO35_12765 SM00098 Alkaline phosphatase homologues CJO35_12775 SM01350 CJO35_12775 CJO35_12810 SM00382 ATPases associated with a variety of cellular activities CJO35_12820 SM00062 Bacterial periplasmic substrate-binding proteins CJO35_12820 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CJO35_12830 SM00046 Diacylglycerol kinase catalytic domain (presumed) CJO35_12840 SM00861 Transketolase, pyrimidine binding domain CJO35_12860 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO35_12870 SM00091 PAS domain CJO35_12870 SM00382 ATPases associated with a variety of cellular activities CJO35_12885 SM00646 CJO35_12885 CJO35_12910 SM00448 cheY-homologous receiver domain CJO35_12915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_12930 SM00363 S4 RNA-binding domain CJO35_12935 SM00861 Transketolase, pyrimidine binding domain CJO35_12970 SM00878 Biotin carboxylase C-terminal domain CJO35_13015 SM00382 ATPases associated with a variety of cellular activities CJO35_13025 SM00841 Elongation factor P, C-terminal CJO35_13025 SM01185 CJO35_13025 CJO35_13060 SM00529 Helix-turn-helix diphteria tox regulatory element CJO35_13070 SM00450 Rhodanese Homology Domain CJO35_13085 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_13085 SM00382 ATPases associated with a variety of cellular activities CJO35_13105 SM00487 DEAD-like helicases superfamily CJO35_13105 SM00490 helicase superfamily c-terminal domain CJO35_13120 SM00530 Helix-turn-helix XRE-family like proteins CJO35_13180 SM00382 ATPases associated with a variety of cellular activities CJO35_13205 SM00849 Metallo-beta-lactamase superfamily CJO35_13225 SM00631 CJO35_13225 CJO35_13255 SM00028 Tetratricopeptide repeats CJO35_13295 SM00382 ATPases associated with a variety of cellular activities CJO35_13300 SM00382 ATPases associated with a variety of cellular activities CJO35_13375 SM00382 ATPases associated with a variety of cellular activities CJO35_13390 SM00518 AP endonuclease family 2 CJO35_13395 SM00487 DEAD-like helicases superfamily CJO35_13395 SM00490 helicase superfamily c-terminal domain CJO35_13495 SM00400 zinc finger CJO35_13495 SM00493 CJO35_13495 CJO35_13510 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_13555 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_13605 SM01133 CJO35_13605 CJO35_13610 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_13625 SM00271 DnaJ molecular chaperone homology domain CJO35_13645 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_13650 SM00838 Elongation factor G C-terminus CJO35_13685 SM00849 Metallo-beta-lactamase superfamily CJO35_13695 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CJO35_13715 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_13725 SM01103 CJO35_13725 CJO35_13765 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CJO35_13765 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJO35_13785 SM01179 CJO35_13785 CJO35_13790 SM00382 ATPases associated with a variety of cellular activities CJO35_13860 SM00450 Rhodanese Homology Domain CJO35_13860 SM00849 Metallo-beta-lactamase superfamily CJO35_13870 SM00421 helix_turn_helix, Lux Regulon CJO35_13870 SM00448 cheY-homologous receiver domain CJO35_13875 SM00387 Histidine kinase-like ATPases CJO35_13895 SM00450 Rhodanese Homology Domain CJO35_13895 SM00849 Metallo-beta-lactamase superfamily CJO35_13900 SM00450 Rhodanese Homology Domain CJO35_13950 SM01234 CJO35_13950 CJO35_13955 SM01004 Delta-aminolevulinic acid dehydratase CJO35_13965 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CJO35_13985 SM00421 helix_turn_helix, Lux Regulon CJO35_13985 SM00448 cheY-homologous receiver domain CJO35_14010 SM00382 ATPases associated with a variety of cellular activities CJO35_14015 SM00382 ATPases associated with a variety of cellular activities CJO35_14020 SM00422 helix_turn_helix, mercury resistance CJO35_14030 SM00342 helix_turn_helix, arabinose operon control protein CJO35_14040 SM00014 Acid phosphatase homologues CJO35_14075 SM00640 Glycosyl hydrolases family 32 CJO35_14100 SM00382 ATPases associated with a variety of cellular activities CJO35_14235 SM00650 Ribosomal RNA adenine dimethylases CJO35_14290 SM00732 Likely ribonuclease with RNase H fold. CJO35_14300 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CJO35_14325 SM00382 ATPases associated with a variety of cellular activities CJO35_14330 SM00028 Tetratricopeptide repeats CJO35_14350 SM00382 ATPases associated with a variety of cellular activities CJO35_14380 SM00287 Bacterial SH3 domain homologues CJO35_14380 SM00646 CJO35_14380 CJO35_14390 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_14390 SM00954 Region found in RelA / SpoT proteins CJO35_14435 SM01323 CJO35_14435 CJO35_14455 SM00382 ATPases associated with a variety of cellular activities CJO35_14460 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CJO35_14510 SM00257 Lysin motif CJO35_14555 SM01317 CJO35_14555 CJO35_14590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CJO35_14660 SM00257 Lysin motif CJO35_14670 SM01004 Delta-aminolevulinic acid dehydratase CJO35_14705 SM00382 ATPases associated with a variety of cellular activities CJO35_14705 SM00464 Found in ATP-dependent protease La (LON) CJO35_14710 SM00382 ATPases associated with a variety of cellular activities CJO35_14715 SM00382 ATPases associated with a variety of cellular activities CJO35_14715 SM00994 ClpX C4-type zinc finger CJO35_14715 SM01086 C-terminal, D2-small domain, of ClpB protein CJO35_14740 SM01329 CJO35_14740 CJO35_14745 SM00917 LeuA allosteric (dimerisation) domain CJO35_14775 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO35_14810 SM00954 Region found in RelA / SpoT proteins CJO35_14855 SM00028 Tetratricopeptide repeats CJO35_14890 SM00909 Sporulation and spore germination CJO35_14900 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_14905 SM00421 helix_turn_helix, Lux Regulon CJO35_14945 SM00465 GIY-YIG type nucleases (URI domain) CJO35_14955 SM00893 Electron transfer flavoprotein domain CJO35_14960 SM00893 Electron transfer flavoprotein domain CJO35_14985 SM00463 Small MutS-related domain CJO35_14985 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CJO35_14985 SM00534 ATPase domain of DNA mismatch repair MUTS family CJO35_14990 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CJO35_14990 SM00481 DNA polymerase alpha chain like domain CJO35_14990 SM00483 DNA polymerase X family CJO35_15030 SM00382 ATPases associated with a variety of cellular activities CJO35_15045 SM00873 B3/4 domain CJO35_15045 SM00874 tRNA synthetase B5 domain CJO35_15045 SM00896 Ferredoxin-fold anticodon binding domain CJO35_15055 SM00967 RNA 2'-O ribose methyltransferase substrate binding CJO35_15075 SM00813 Alpha-L-arabinofuranosidase C-terminus CJO35_15100 SM01007 Class II Aldolase and Adducin N-terminal domain CJO35_15165 SM00448 cheY-homologous receiver domain CJO35_15165 SM00850 LytTr DNA-binding domain CJO35_15170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CJO35_15170 SM00387 Histidine kinase-like ATPases CJO35_15185 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CJO35_15200 SM00382 ATPases associated with a variety of cellular activities CJO35_15230 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJO35_15235 SM00656 CJO35_15235 CJO35_15250 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CJO35_15250 SM01232 CJO35_15250 CJO35_15255 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CJO35_15255 SM00474 3'-5' exonuclease CJO35_15255 SM00475 5'-3' exonuclease CJO35_15255 SM00482 DNA polymerase A domain CJO35_15260 SM00091 PAS domain CJO35_15260 SM00387 Histidine kinase-like ATPases CJO35_15260 SM00388 His Kinase A (phosphoacceptor) domain CJO35_15265 SM00448 cheY-homologous receiver domain CJO35_15265 SM00862 Transcriptional regulatory protein, C terminal CJO35_15275 SM01329 CJO35_15275 CJO35_15320 SM00919 Malic enzyme, NAD binding domain CJO35_15320 SM01274 CJO35_15320 CJO35_15325 SM00481 DNA polymerase alpha chain like domain CJO35_15355 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_15365 SM00849 Metallo-beta-lactamase superfamily CJO35_15385 SM00852 Probable molybdopterin binding domain CJO35_15440 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_15455 SM00981 CJO35_15455 CJO35_15485 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CJO35_15500 SM00363 S4 RNA-binding domain CJO35_15500 SM01390 CJO35_15500 CJO35_15520 SM00849 Metallo-beta-lactamase superfamily CJO35_15525 SM00344 helix_turn_helix ASNC type CJO35_15530 SM00363 S4 RNA-binding domain CJO35_15545 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_15565 SM00354 helix_turn _helix lactose operon repressor CJO35_15570 SM00830 Chorismate mutase type II CJO35_15600 SM00382 ATPases associated with a variety of cellular activities CJO35_15600 SM00843 CJO35_15600 CJO35_15635 SM00919 Malic enzyme, NAD binding domain CJO35_15635 SM01274 CJO35_15635 CJO35_15640 SM00849 Metallo-beta-lactamase superfamily CJO35_15660 SM00642 Alpha-amylase domain CJO35_15665 SM00046 Diacylglycerol kinase catalytic domain (presumed) CJO35_15705 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_15710 SM00363 S4 RNA-binding domain CJO35_15735 SM00450 Rhodanese Homology Domain CJO35_15775 SM00342 helix_turn_helix, arabinose operon control protein CJO35_15845 SM00382 ATPases associated with a variety of cellular activities CJO35_15855 SM00382 ATPases associated with a variety of cellular activities CJO35_15860 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_15870 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_15900 SM00014 Acid phosphatase homologues CJO35_15945 SM00382 ATPases associated with a variety of cellular activities CJO35_15990 SM01234 CJO35_15990 CJO35_15995 SM00947 Carbonic anhydrase CJO35_16000 SM00833 Cobalamin synthesis protein cobW C-terminal domain CJO35_16035 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CJO35_16095 SM00642 Alpha-amylase domain CJO35_16220 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_16245 SM00028 Tetratricopeptide repeats CJO35_16305 SM01005 Alanine racemase, C-terminal domain CJO35_16310 SM00835 Cupin CJO35_16420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_16420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_16420 SM00319 Homologues of the ligand binding domain of Tar CJO35_16425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_16425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_16425 SM00319 Homologues of the ligand binding domain of Tar CJO35_16430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_16430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_16430 SM00319 Homologues of the ligand binding domain of Tar CJO35_16450 SM00642 Alpha-amylase domain CJO35_16470 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_16470 SM01091 Transporter associated domain CJO35_16525 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_16535 SM00344 helix_turn_helix ASNC type CJO35_16565 SM01298 CJO35_16565 CJO35_16570 SM00479 CJO35_16570 CJO35_16595 SM00091 PAS domain CJO35_16595 SM00387 Histidine kinase-like ATPases CJO35_16600 SM00448 cheY-homologous receiver domain CJO35_16675 SM00421 helix_turn_helix, Lux Regulon CJO35_16675 SM00448 cheY-homologous receiver domain CJO35_16680 SM00387 Histidine kinase-like ATPases CJO35_16710 SM00052 Putative diguanylate phosphodiesterase CJO35_16760 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_16810 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CJO35_16810 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CJO35_16915 SM00028 Tetratricopeptide repeats CJO35_16995 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_17095 SM01092 CO dehydrogenase flavoprotein C-terminal domain CJO35_17115 SM00028 Tetratricopeptide repeats CJO35_17140 SM00382 ATPases associated with a variety of cellular activities CJO35_17165 SM00382 ATPases associated with a variety of cellular activities CJO35_17165 SM00930 CJO35_17165 CJO35_17180 SM00493 CJO35_17180 CJO35_17240 SM00382 ATPases associated with a variety of cellular activities CJO35_17285 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_17290 SM00448 cheY-homologous receiver domain CJO35_17290 SM00862 Transcriptional regulatory protein, C terminal CJO35_17295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_17295 SM00387 Histidine kinase-like ATPases CJO35_17295 SM00388 His Kinase A (phosphoacceptor) domain CJO35_17340 SM00421 helix_turn_helix, Lux Regulon CJO35_17340 SM00448 cheY-homologous receiver domain CJO35_17345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_17345 SM00387 Histidine kinase-like ATPases CJO35_17400 SM01130 CJO35_17400 CJO35_17405 SM00382 ATPases associated with a variety of cellular activities CJO35_17420 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_17420 SM00895 CJO35_17420 CJO35_17440 SM00710 Parallel beta-helix repeats CJO35_17445 SM00858 CJO35_17445 CJO35_17455 SM00354 helix_turn _helix lactose operon repressor CJO35_17470 SM00387 Histidine kinase-like ATPases CJO35_17470 SM00388 His Kinase A (phosphoacceptor) domain CJO35_17475 SM00448 cheY-homologous receiver domain CJO35_17475 SM00862 Transcriptional regulatory protein, C terminal CJO35_17480 SM00382 ATPases associated with a variety of cellular activities CJO35_17595 SM00606 Cellulose Binding Domain Type IV CJO35_17595 SM01217 CJO35_17595 CJO35_17600 SM00382 ATPases associated with a variety of cellular activities CJO35_17665 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_17665 SM01134 CJO35_17665 CJO35_17685 SM01007 Class II Aldolase and Adducin N-terminal domain CJO35_17715 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_17735 SM00450 Rhodanese Homology Domain CJO35_17755 SM00835 Cupin CJO35_17845 SM00644 CJO35_17845 CJO35_17875 SM00710 Parallel beta-helix repeats CJO35_17880 SM00047 Lysozyme subfamily 2 CJO35_17965 SM00507 HNH nucleases CJO35_18015 SM00891 ERCC4 domain CJO35_18030 SM00885 D5 N terminal like CJO35_18075 SM00530 Helix-turn-helix XRE-family like proteins CJO35_18090 SM00530 Helix-turn-helix XRE-family like proteins CJO35_18110 SM00316 Ribosomal protein S1-like RNA-binding domain CJO35_18110 SM00357 Cold shock protein domain CJO35_18110 SM00955 CJO35_18110 CJO35_18125 SM00966 SpoVT / AbrB like domain CJO35_18130 SM00530 Helix-turn-helix XRE-family like proteins CJO35_18135 SM00530 Helix-turn-helix XRE-family like proteins CJO35_18140 SM00530 Helix-turn-helix XRE-family like proteins CJO35_18160 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_18160 SM00382 ATPases associated with a variety of cellular activities CJO35_18200 SM01192 CJO35_18200 CJO35_18200 SM01193 CJO35_18200 CJO35_18220 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJO35_18245 SM00382 ATPases associated with a variety of cellular activities CJO35_18270 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_18270 SM00895 CJO35_18270 CJO35_18365 SM00530 Helix-turn-helix XRE-family like proteins CJO35_18400 SM01130 CJO35_18400 CJO35_18425 SM00640 Glycosyl hydrolases family 32 CJO35_18455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_18465 SM00947 Carbonic anhydrase CJO35_18480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CJO35_18535 SM00028 Tetratricopeptide repeats CJO35_18620 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_18670 SM00382 ATPases associated with a variety of cellular activities CJO35_18675 SM00487 DEAD-like helicases superfamily CJO35_18675 SM00490 helicase superfamily c-terminal domain CJO35_18690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_18700 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_18700 SM00245 tail specific protease CJO35_18705 SM01329 CJO35_18705 CJO35_18720 SM00382 ATPases associated with a variety of cellular activities CJO35_18745 SM00957 SecA DEAD-like domain CJO35_18745 SM00958 SecA preprotein cross-linking domain CJO35_18840 SM00487 DEAD-like helicases superfamily CJO35_18840 SM00490 helicase superfamily c-terminal domain CJO35_18850 SM00421 helix_turn_helix, Lux Regulon CJO35_18850 SM00448 cheY-homologous receiver domain CJO35_18855 SM00387 Histidine kinase-like ATPases CJO35_18905 SM00984 UDP binding domain CJO35_18925 SM00646 CJO35_18925 CJO35_18955 SM00382 ATPases associated with a variety of cellular activities CJO35_19025 SM00354 helix_turn _helix lactose operon repressor CJO35_19070 SM00854 Bacterial capsule synthesis protein PGA_cap CJO35_19085 SM00354 helix_turn _helix lactose operon repressor CJO35_19100 SM00382 ATPases associated with a variety of cellular activities CJO35_19140 SM00344 helix_turn_helix ASNC type CJO35_19175 SM00487 DEAD-like helicases superfamily CJO35_19175 SM00490 helicase superfamily c-terminal domain CJO35_19185 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_19185 SM01134 CJO35_19185 CJO35_19275 SM00347 helix_turn_helix multiple antibiotic resistance protein CJO35_19285 SM00014 Acid phosphatase homologues CJO35_19290 SM01131 CJO35_19290 CJO35_19305 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_19315 SM00116 Domain in cystathionine beta-synthase and other proteins. CJO35_19315 SM01091 Transporter associated domain CJO35_19325 SM00938 Nitrogen regulatory protein P-II CJO35_19355 SM00155 Phospholipase D. Active site motifs. CJO35_19375 SM00823 Phosphopantetheine attachment site CJO35_19375 SM00824 Thioesterase CJO35_19395 SM00822 CJO35_19395 CJO35_19420 SM00342 helix_turn_helix, arabinose operon control protein CJO35_19445 SM00729 Elongator protein 3, MiaB family, Radical SAM CJO35_19465 SM00327 von Willebrand factor (vWF) type A domain CJO35_19470 SM00327 von Willebrand factor (vWF) type A domain CJO35_19500 SM00382 ATPases associated with a variety of cellular activities CJO35_19565 SM00226 Low molecular weight phosphatase family CJO35_19610 SM00354 helix_turn _helix lactose operon repressor CJO35_19620 SM00937 CJO35_19620 CJO35_19640 SM00919 Malic enzyme, NAD binding domain CJO35_19640 SM01274 CJO35_19640 CJO35_19655 SM00357 Cold shock protein domain CJO35_19655 SM00382 ATPases associated with a variety of cellular activities CJO35_19655 SM00959 Rho termination factor, N-terminal domain CJO35_19680 SM00448 cheY-homologous receiver domain CJO35_19725 SM00155 Phospholipase D. Active site motifs. CJO35_19735 SM00836 DALR anticodon binding domain CJO35_19735 SM01016 Arginyl tRNA synthetase N terminal dom CJO35_19795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CJO35_19850 SM00346 helix_turn_helix isocitrate lyase regulation CJO35_19900 SM00382 ATPases associated with a variety of cellular activities CJO35_19910 SM00421 helix_turn_helix, Lux Regulon CJO35_19910 SM00448 cheY-homologous receiver domain CJO35_19935 SM00986 Uracil DNA glycosylase superfamily CJO35_19935 SM00987 UreE urease accessory protein, C-terminal domain CJO35_19955 SM00640 Glycosyl hydrolases family 32 CJO35_19965 SM01061 CAT RNA binding domain CJO35_20035 SM00382 ATPases associated with a variety of cellular activities CJO35_20040 SM00382 ATPases associated with a variety of cellular activities CJO35_20060 SM00421 helix_turn_helix, Lux Regulon CJO35_20060 SM00448 cheY-homologous receiver domain CJO35_20175 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CJO35_20205 SM00387 Histidine kinase-like ATPases CJO35_20210 SM00421 helix_turn_helix, Lux Regulon CJO35_20210 SM00448 cheY-homologous receiver domain CJO35_20230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CJO35_20245 SM00346 helix_turn_helix isocitrate lyase regulation CJO35_20265 SM00954 Region found in RelA / SpoT proteins CJO35_20340 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_20340 SM00895 CJO35_20340 CJO35_20370 SM00382 ATPases associated with a variety of cellular activities CJO35_20400 SM00382 ATPases associated with a variety of cellular activities CJO35_20430 SM01060 CJO35_20430 CJO35_20435 SM01060 CJO35_20435 CJO35_20455 SM00382 ATPases associated with a variety of cellular activities CJO35_20470 SM00382 ATPases associated with a variety of cellular activities CJO35_20480 SM00530 Helix-turn-helix XRE-family like proteins CJO35_20495 SM00382 ATPases associated with a variety of cellular activities CJO35_20500 SM01260 CJO35_20500 CJO35_20515 SM01260 CJO35_20515 CJO35_20520 SM00656 CJO35_20520 CJO35_20530 SM00382 ATPases associated with a variety of cellular activities CJO35_20535 SM00382 ATPases associated with a variety of cellular activities CJO35_20565 SM00919 Malic enzyme, NAD binding domain CJO35_20565 SM01274 CJO35_20565 CJO35_20580 SM00870 CJO35_20580 CJO35_20585 SM00530 Helix-turn-helix XRE-family like proteins CJO35_20595 SM00448 cheY-homologous receiver domain CJO35_20595 SM00862 Transcriptional regulatory protein, C terminal CJO35_20600 SM00387 Histidine kinase-like ATPases CJO35_20610 SM00382 ATPases associated with a variety of cellular activities CJO35_20655 SM00894 Excalibur calcium-binding domain CJO35_20710 SM00100 Cyclic nucleotide-monophosphate binding domain CJO35_20710 SM00419 helix_turn_helix, cAMP Regulatory protein CJO35_20750 SM00640 Glycosyl hydrolases family 32 CJO35_20765 SM00354 helix_turn _helix lactose operon repressor CJO35_20825 SM01060 CJO35_20825 CJO35_20830 SM00871 Bacterial transcription activator, effector binding domain CJO35_20855 SM00382 ATPases associated with a variety of cellular activities CJO35_20895 SM00382 ATPases associated with a variety of cellular activities CJO35_20900 SM00387 Histidine kinase-like ATPases CJO35_20905 SM00448 cheY-homologous receiver domain CJO35_20905 SM00862 Transcriptional regulatory protein, C terminal CJO35_20945 SM00487 DEAD-like helicases superfamily CJO35_20945 SM00490 helicase superfamily c-terminal domain CJO35_20975 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CJO35_20985 SM01133 CJO35_20985 CJO35_21005 SM00267 diguanylate cyclase CJO35_21100 SM00420 helix_turn_helix, Deoxyribose operon repressor CJO35_21100 SM01134 CJO35_21100 CJO35_21120 SM00387 Histidine kinase-like ATPases CJO35_21125 SM00382 ATPases associated with a variety of cellular activities CJO35_21175 SM00899 CJO35_21175 CJO35_21190 SM00382 ATPases associated with a variety of cellular activities CJO35_21195 SM00387 Histidine kinase-like ATPases CJO35_21195 SM00388 His Kinase A (phosphoacceptor) domain CJO35_21200 SM00448 cheY-homologous receiver domain CJO35_21200 SM00862 Transcriptional regulatory protein, C terminal CJO35_21210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CJO35_21210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_21220 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CJO35_21220 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CJO35_21250 SM00354 helix_turn _helix lactose operon repressor CJO35_21275 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_21275 SM00895 CJO35_21275 CJO35_21290 SM01350 CJO35_21290 CJO35_21320 SM00465 GIY-YIG type nucleases (URI domain) CJO35_21330 SM00382 ATPases associated with a variety of cellular activities CJO35_21345 SM00421 helix_turn_helix, Lux Regulon CJO35_21345 SM00448 cheY-homologous receiver domain CJO35_21360 SM00382 ATPases associated with a variety of cellular activities CJO35_21400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CJO35_21405 SM00849 Metallo-beta-lactamase superfamily CJO35_21420 SM00091 PAS domain CJO35_21420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CJO35_21420 SM00387 Histidine kinase-like ATPases CJO35_21420 SM00388 His Kinase A (phosphoacceptor) domain CJO35_21425 SM00448 cheY-homologous receiver domain CJO35_21425 SM00862 Transcriptional regulatory protein, C terminal CJO35_21455 SM00788 Adenylosuccinate synthetase CJO35_21465 SM00382 ATPases associated with a variety of cellular activities CJO35_21500 SM00345 helix_turn_helix gluconate operon transcriptional repressor CJO35_21500 SM00866 CJO35_21500 CJO35_21520 SM00267 diguanylate cyclase CJO35_21595 SM00470 ParB-like nuclease domain CJO35_21615 SM00470 ParB-like nuclease domain CJO35_21625 SM01228 CJO35_21625 CJO35_21635 SM00393 Putative single-stranded nucleic acids-binding domain CJO35_21635 SM01245 CJO35_21635